Psyllid ID: psy2343

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
Protein Sequence
MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDFWKFIKCARMYRDMLDE
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEcEEEEEEEEEccEEEEEEEcccEEEEcEEEEcccccccccccccccccccEEEEcccccccccccccEEEEEcccccHHHHHHHHHcccccEEEEEEEccEEEccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccccEEcHHHHHHHHccccEEEcccEEEEccEEEEccccEEcccEEEEccccccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccEEEEEHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEccccccEEEEEEEEccHcHcccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEccccEEEEEEcccEEEEEEEEEEcccccccccccccccEccEEEEcccccccccccccEEEEEEccccHHHHHHHHHHHHHHHEEEccccEEEEEcccccccHHHHHHHHHHHccHcHHHHHHHHHHHHHHcccHHHccccccccccccccccccccccccEEEEEEEEccccEEEcccEEEEEcccEEEEEEEEEEcccEEcccccccccEEcccccccEEEEccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEcHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mesdlggvwnsqascgrvypslhlispkfntqvpdypmpdnypvypnhsMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELsngkkkkydFIAVCngaqrvarypnysgyfsgeilhsmdykspdqirnKRVLVVGagnsgcdiavdashhsekvyhstrrgyhyypkfidgkptpqwmlqlgnkfssKEETMAYIKQVFKLAgfdgvdyglkkpdhpldaahpimnsqilyhighgdilpkddiknlngnivhfvddthiEVDTIIyatgynrhfpfidkeklewklgipdlfihiaprnldniffFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNakkndnpdlgqdyfidshrHLWEVDFWKFIKCARMYRDMLDE
Flexible Loop (DISEMBL)
MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELsngkkkkydFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDFWKFIKCARMYRDMLDE
Low Complexity Region (SEG)
MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDFWKFIKCARMYRDMLDE
Disordered region (IsUnstruct)
******GVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDFWKFIKCARMYR*****
Disordered Region (DISOPRED)
*ESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRK****************DLGQDYFIDSHRHLWEVDFWKFIKCARMYRDML**
Disordered Region (DISEMBL)
MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDFWKFIKCARMYRDMLDE
Disordered Region (DISPRO)
***DLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDFWKFIKCARMYRDMLD*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDFWKFIKCARMYRDMLDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	396	2.2.26 [Sep-21-2011]
P50285	532	Dimethylaniline monooxyge	no	N/A	0.767	0.571	0.331	3e-35
P49109	533	Dimethylaniline monooxyge	no	N/A	0.924	0.686	0.290	4e-35
Q04799	533	Dimethylaniline monooxyge	no	N/A	0.919	0.682	0.300	2e-34
P16549	532	Dimethylaniline monooxyge	yes	N/A	0.904	0.672	0.309	2e-34
P97872	533	Dimethylaniline monooxyge	no	N/A	0.931	0.692	0.294	3e-34
P17635	535	Dimethylaniline monooxyge	no	N/A	0.825	0.611	0.288	5e-34
P36365	532	Dimethylaniline monooxyge	no	N/A	0.767	0.571	0.328	5e-34
Q8HZ69	535	Dimethylaniline monooxyge	N/A	N/A	0.825	0.611	0.300	1e-33
Q99518	471	Dimethylaniline monooxyge	yes	N/A	0.825	0.694	0.300	1e-33
Q8HZ70	535	Dimethylaniline monooxyge	yes	N/A	0.825	0.611	0.300	2e-33

>sp|P50285|FMO1_MOUSE Dimethylaniline monooxygenase [N-oxide-forming] 1 OS=Mus musculus GN=Fmo1 PE=1 SV=1

 Score =  149 bits (377), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 171/332 (51%), Gaps = 28/332 (8%)

Query: 2   ESDLGGVW--NSQASCGR--VYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRS 57
            SDLGG+W        GR  +Y S+   S +  +  PD+P P++YP +  +S+ L+YL+ 
Sbjct: 34  SSDLGGLWRFTEHVEEGRASLYKSVVSNSSREMSCYPDFPFPEDYPNFVPNSLFLEYLKL 93

Query: 58  YAKKFDVYNHSIFNTEVINLEQYEDI-----WEV-ELSNGKKKK--YDFIAVCNGAQRVA 109
           Y+ +F++     FNT+V ++ +  D      WEV  ++NGK+    +D + VC G     
Sbjct: 94  YSTQFNLQRCIYFNTKVCSITKRPDFAVSGQWEVVTVTNGKQNSAIFDAVMVCTGFLTNP 153

Query: 110 RYP--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHS 165
             P  ++ G   F GE  HS  YK PD  ++KRVLVVG GNSG DIAV+ASH ++KV+ S
Sbjct: 154 HLPLDSFPGILTFKGEYFHSRQYKHPDIFKDKRVLVVGMGNSGTDIAVEASHLAKKVFLS 213

Query: 166 TRRGYHYYPKFID-GKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAG------FDGVDYG 218
           T  G     +  D G P   W +    +F +    +     V  L        F+ V+YG
Sbjct: 214 TTGGAWVISRVFDSGYP---WDMIFMTRFQNMLRNLLPTPIVSWLISKKMNSWFNHVNYG 270

Query: 219 LKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE-VDTIIYAT 277
           +  P+       P++N ++   I  G +  K  IK +  N V F +    E +D I++AT
Sbjct: 271 V-APEDRTQLREPVLNDELPGRIITGKVFIKPSIKEVKENSVVFNNTPKEEPIDIIVFAT 329

Query: 278 GYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNL 309
           GY   FPF+D+  ++ + G   L+ +I P +L
Sbjct: 330 GYTFAFPFLDESVVKVEDGQASLYKYIFPAHL 361

This protein is involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides. Form I catalyzes the N-oxygenation of secondary and tertiary amines.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 8

>sp|P49109|FMO5_CAVPO Dimethylaniline monooxygenase [N-oxide-forming] 5 OS=Cavia porcellus GN=FMO5 PE=2 SV=2

 Score =  149 bits (376), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 196/409 (47%), Gaps = 43/409 (10%)

Query: 3   SDLGGVW----NSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSY 58
           +D+GG+W    N +     +Y S+ + + K      DYP+PD+YP + ++S +L+Y R Y
Sbjct: 36  ADIGGLWRFQENPEEGRASIYKSVIINTSKEMMCFSDYPIPDHYPNFMHNSHVLEYFRMY 95

Query: 59  AKKFDVYNHSIFNTEVINLEQYEDI-----WEVELSNGKKKK---YDFIAVCNGAQRVAR 110
           AK+F +  +  F T V N+++  D      WEV   +  K K   +D + VC G    A 
Sbjct: 96  AKEFGLLKYIQFKTTVCNVKKRPDFSTSGQWEVVTEHEGKTKVDVFDAVMVCTGHHTNAH 155

Query: 111 YP--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHST 166
            P  ++ G   F G+  HS DYK+P+    KRV+++G GNSG D+AV+ SH +++V+ ST
Sbjct: 156 LPLESFPGIEKFKGQYFHSRDYKNPEAFTGKRVVIIGIGNSGGDLAVEISHTAKQVFLST 215

Query: 167 RRGY--------HYYPKFIDGKPTPQWMLQ--LGNKFSSKEETMAYIKQVFKLAGFDGVD 216
           RRG         H YP  +       + L   LG   S+     AY+++      FD   
Sbjct: 216 RRGSWILNRVGKHGYPTDVLLSSRFTYFLSKILGQSLSN-----AYVEKQMN-ERFDHEM 269

Query: 217 YGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHI-EVDTIIY 275
           +GL KP H   + HP +N  +   I  G +  K ++K        F D +   ++D +I+
Sbjct: 270 FGL-KPKHRAMSQHPTVNDDLPNRIIAGMVKVKGNVKEFTETAAIFEDGSREDDIDAVIF 328

Query: 276 ATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLD--NIFFFGFVNAAAGLGDGLRLQGQ 333
           ATGY+  FPF++      K  +  L+  + P NL+   +   G +     +     LQG 
Sbjct: 329 ATGYSFDFPFLEDSVKVVKNKV-SLYKKVFPPNLERPTLAIIGLIQPLGAIMPISELQG- 386

Query: 334 FIRSYIQAF--IRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDF 380
             R  +Q F  ++      + +        ++ + Y +DS RH  + D+
Sbjct: 387 --RWAVQVFKGLKTLPSQSEMMAEITKAQEEIAKRY-VDSQRHTIQGDY 432

In contrast with other forms of FMO it does not seem to be a drug-metabolizing enzyme.

Cavia porcellus (taxid: 10141)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 8

>sp|Q04799|FMO5_RABIT Dimethylaniline monooxygenase [N-oxide-forming] 5 OS=Oryctolagus cuniculus GN=FMO5 PE=1 SV=2

 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 123/409 (30%), Positives = 201/409 (49%), Gaps = 45/409 (11%)

Query: 4   DLGGVWNSQASC--GR--VYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYA 59
           D+GG+W  Q S   GR  +Y S+ + + K      DYP+PD++P + ++S +L+Y R YA
Sbjct: 37  DIGGLWRFQESPDEGRASIYKSVIINTSKEMMCFSDYPIPDHFPNFMHNSQVLEYFRMYA 96

Query: 60  KKFDVYNHSIFNTEVINLEQYEDI-----WEV-ELSNGKKKK--YDFIAVCNGAQRVARY 111
           K+F +  +  F T V ++++  D      WEV     GKK+   +D + VC G    A  
Sbjct: 97  KEFGLLKYIQFKTTVCSVKKRPDFSTSGQWEVLTECEGKKESAVFDGVLVCTGHHTSAHL 156

Query: 112 P--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167
           P  ++ G   F G+ LHS DYK+P++   KRV+V+G GNSG D+AV+ SH +++V+ STR
Sbjct: 157 PLESFPGIEKFKGQYLHSRDYKNPEKFTGKRVIVIGIGNSGGDLAVEISHTAKQVFLSTR 216

Query: 168 RGYHYYPKFID-GKPTPQWMLQLGNKFSS--KEETMAYIKQVF---KL-AGFDGVDYGLK 220
           RG     +  D G P     + L ++FS   K+ T   I   F   K+   FD   +GL 
Sbjct: 217 RGAWIMNRVGDHGYPID---ILLSSRFSQFLKKITGETIANSFLERKMNQRFDHAMFGL- 272

Query: 221 KPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHI-EVDTIIYATGY 279
           KP H   + HP +N  +   I  G +  K ++K        F D +   ++D +I+ATGY
Sbjct: 273 KPKHRALSQHPTVNDDLPNRIISGSVKIKGNVKEFTETAAIFEDGSREDDIDAVIFATGY 332

Query: 280 NRHFPFIDKEKLEWKLGIPDLFIHIAPRNLD--NIFFFGFVNAAAGLGDGLRLQGQFIRS 337
           +  FPF++      K  +  L+  + P NL+   +   G +     +     LQ ++   
Sbjct: 333 SFSFPFLEDSVKVVKNKV-SLYKKVFPPNLEKPTLAIIGLIQPLGAIMPISELQARWATL 391

Query: 338 YIQAFIRKSKGYLKFLNAKKNDNPDLGQ------DYFIDSHRHLWEVDF 380
             +         LK L ++     ++ Q        +++S RH  + D+
Sbjct: 392 VFKG--------LKTLPSQSEMMTEISQVQEKMAKRYVESQRHTIQGDY 432

In contrast with other forms of FMO it does not seem to be a drug-metabolizing enzyme.

Oryctolagus cuniculus (taxid: 9986)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 8

>sp|P16549|FMO1_PIG Dimethylaniline monooxygenase [N-oxide-forming] 1 OS=Sus scrofa GN=FMO1 PE=1 SV=3

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 189/384 (49%), Gaps = 26/384 (6%)

Query: 4   DLGGVW--NSQASCGR--VYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYA 59
           DLGG+W        GR  +Y S+   S K  +  PD+P P++YP Y  +S  L+YLR YA
Sbjct: 36  DLGGLWRFTEHVEEGRASLYKSVVSNSCKEMSCYPDFPFPEDYPNYVPNSHFLEYLRMYA 95

Query: 60  KKFDVYNHSIFNTEVINLEQYEDI-----WEV-ELSNGKKKK--YDFIAVCNGAQRVARY 111
            +F++     F T+V ++ ++ED      W+V  L  GK++   +D + VC G       
Sbjct: 96  NQFNLLKCIQFKTKVCSVTKHEDFNTTGQWDVVTLCEGKQESAVFDAVMVCTGFLTNPYL 155

Query: 112 P--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167
           P  ++ G   F G+  HS  YK PD  ++K VLVVG GNSG DIAV+ASH ++KV+ ST 
Sbjct: 156 PLDSFPGINTFKGQYFHSRQYKHPDIFKDKSVLVVGMGNSGTDIAVEASHLAKKVFLSTT 215

Query: 168 RGYHYYPKFID-GKPTPQ-WMLQLGNKFSSKEETMAYIKQVFKL--AGFDGVDYGLKKPD 223
            G     +  D G P    +M +  N F +   T      + K   + F+  +YGL  P+
Sbjct: 216 GGAWVISRVFDSGYPWDMVFMTRFQNMFRNSLPTPIVNWLIAKKMNSWFNHANYGL-IPE 274

Query: 224 HPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE-VDTIIYATGYNRH 282
             +    P++N ++   I  G +L K  IK +  N V F      E +D I++ATGY   
Sbjct: 275 DRIQLREPVLNDELPGRIITGKVLIKPSIKEVKENSVVFNSSPEEEPIDIIVFATGYTFA 334

Query: 283 FPFIDKEKLEWKLGIPDLFIHIAPRNLD--NIFFFGFVNAAAGLGDGLRLQGQFIRSYIQ 340
           FPF+D+  ++ + G   L+ +I P +L    +   G +     L      Q ++    ++
Sbjct: 335 FPFLDESVVKVEDGQASLYKYIFPAHLQKPTLAVIGLIKPLGSLLPTGDTQARWAVRVLK 394

Query: 341 AF--IRKSKGYLKFLNAKKNDNPD 362
               +  S   ++ +N +K + P 
Sbjct: 395 GVNKLPPSSVMIQEVNTRKENKPS 418

This protein is involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 8

>sp|P97872|FMO5_MOUSE Dimethylaniline monooxygenase [N-oxide-forming] 5 OS=Mus musculus GN=Fmo5 PE=2 SV=4

 Score =  146 bits (368), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 197/404 (48%), Gaps = 35/404 (8%)

Query: 4   DLGGVWNSQASC--GR--VYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYA 59
           D+GG+W  Q +   GR  +Y S+ + + K      DYP+PD+YP Y ++S +L+Y R YA
Sbjct: 37  DIGGLWRFQEAPEEGRASIYQSVVINTSKEMMCFSDYPIPDHYPNYMHNSQVLEYFRMYA 96

Query: 60  KKFDVYNHSIFNTEVINLEQYEDI-----WEVELSNGKKKK---YDFIAVCNGAQRVARY 111
           K+FD+  +  F T V ++++  D      W+V      K++   +D + VC G    A  
Sbjct: 97  KEFDLLKYIQFKTTVCSVKKQPDFSTSGQWQVVTECEGKQQVDVFDGVLVCTGHHTDAHL 156

Query: 112 P--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167
           P  ++ G   F G+  HS DYK+P +   KRV+V+G GNSG D+AV+ SH +++V+ STR
Sbjct: 157 PLESFPGIEKFKGKYFHSRDYKNPVEFTGKRVIVIGIGNSGGDLAVEISHTAKQVFLSTR 216

Query: 168 RGY--------HYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGL 219
           RG         H YP  ID   + + M  L        +     KQ+ +   FD   +GL
Sbjct: 217 RGAWILNRVGKHGYP--IDLLLSSRIMYYLSRICGPSLKNNYMEKQMNQR--FDHEMFGL 272

Query: 220 KKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE-VDTIIYATG 278
            KP H   + HP +N  +   I  G +  K ++K        F D +  + +D +I+ATG
Sbjct: 273 -KPKHRALSQHPTVNDDLPNRIIAGLVKVKGNVKEFTETAAVFEDGSREDGIDVVIFATG 331

Query: 279 YNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLD--NIFFFGFVNAAAGLGDGLRLQGQFIR 336
           Y+  FPF++      K  +  L+  + P NL+   +   G +     +     LQG++  
Sbjct: 332 YSFAFPFLEDSVKVVKNKV-SLYKKVFPPNLEKPTLAIIGLIQPLGAIMPISELQGRWAT 390

Query: 337 SYIQAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDF 380
              +  ++K     + +        ++ + Y +DS RH  + D+
Sbjct: 391 QVFKG-LKKLPSQSEMMAEINKAREEMAKRY-VDSQRHTIQGDY 432

In contrast with other forms of FMO it does not seem to be a drug-metabolizing enzyme.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 8

>sp|P17635|FMO2_RABIT Dimethylaniline monooxygenase [N-oxide-forming] 2 OS=Oryctolagus cuniculus GN=FMO2 PE=1 SV=3

 Score =  145 bits (366), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 179/357 (50%), Gaps = 30/357 (8%)

Query: 4   DLGGVW----NSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYA 59
           D+GG+W    N +     +Y S+   + K  +   D+PMP+++P + ++S +L+Y R +A
Sbjct: 36  DIGGLWRFKENVEDGRASIYQSVITNTSKEMSCFSDFPMPEDFPNFLHNSKLLEYFRIFA 95

Query: 60  KKFDVYNHSIFNTEVINLEQYEDI-----WEVELSNGKKKK---YDFIAVCNGAQRVARY 111
           KKFD+  +  F T VI++++  D      WEV   +  K++   +D + VC+G   +   
Sbjct: 96  KKFDLLKYIQFQTTVISVKKRPDFASSGQWEVVTQSNSKQQSAVFDAVMVCSGHHILPNI 155

Query: 112 P--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167
           P  ++ G   F G+  HS  YK P  +  KR+LV+G GNS  DIAV+ S  + +VY STR
Sbjct: 156 PLKSFPGIEKFKGQYFHSRQYKHPAGLEGKRILVIGIGNSASDIAVELSKKAAQVYISTR 215

Query: 168 RGYHYYPKFI-DGKPTPQWMLQLGNKFSSK------EETMAYIKQVFKLAGFDGVDYGLK 220
           +G     +   DG P   W +    +FSS          + ++ +      F+  +YGL 
Sbjct: 216 KGSWVMSRISEDGYP---WDMVFHTRFSSMLRNVLPRMIVKWMMEQQMNRWFNHENYGL- 271

Query: 221 KPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE-VDTIIYATGY 279
            P++      P++N  +   I +G I  K  +K L  +   F D T  E +D I++ATGY
Sbjct: 272 APENKYLMKEPVLNDDLPSRILYGTIKVKRRVKELTESAAIFEDGTVEEDIDVIVFATGY 331

Query: 280 NRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFF--FGFVNAAAGLGDGLRLQGQF 334
              FPF+++  ++ +  +  L+ ++ P  L+   F   G +     +   + LQ ++
Sbjct: 332 TFAFPFLEESLVKIEDNMVSLYKYMFPPQLEKSTFACLGLIQPLGSIFPTVELQARW 388

This protein is involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides.

Oryctolagus cuniculus (taxid: 9986)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 8

>sp|P36365|FMO1_RAT Dimethylaniline monooxygenase [N-oxide-forming] 1 OS=Rattus norvegicus GN=Fmo1 PE=1 SV=2

 Score =  145 bits (366), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 109/332 (32%), Positives = 169/332 (50%), Gaps = 28/332 (8%)

Query: 2   ESDLGGVW--NSQASCGR--VYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRS 57
             DLGG+W        GR  +Y S+   S K  +   D+P P++YP +  +S+ L+YL+ 
Sbjct: 34  SCDLGGLWRFTEHVEEGRASLYNSVVSNSSKEMSCYSDFPFPEDYPNFVPNSLFLEYLQL 93

Query: 58  YAKKFDVYNHSIFNTEVINLEQYEDI-----WEV-ELSNGKKKK--YDFIAVCNGAQRVA 109
           YA +F++     FNT+V ++ +  D      WEV  +  GK+    +D + VC G     
Sbjct: 94  YATQFNLLRCIYFNTKVCSITKRPDFAVSGQWEVVTVCQGKQSSDTFDAVMVCTGFLTNP 153

Query: 110 RYP--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHS 165
             P  ++ G   F G+  HS  YK PD  ++KRVLVVG GNSG DIAV+ASH ++KV+ S
Sbjct: 154 HLPLDSFPGIQTFKGQYFHSRQYKHPDVFKDKRVLVVGMGNSGTDIAVEASHLAKKVFLS 213

Query: 166 TRRGYHYYPKFID-GKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAG------FDGVDYG 218
           T  G     +  D G P   W +    +F +    +     V  L        F+ V+YG
Sbjct: 214 TTGGAWVISRVFDSGYP---WDMIFMTRFQNMLRNLLPTPVVSWLISKKMNSWFNHVNYG 270

Query: 219 LKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE-VDTIIYAT 277
           +  P+       P++N ++   I  G +L K  IK +  N V F +    E +D I++AT
Sbjct: 271 V-APEDRTQLREPVLNDELPGRIITGKVLIKPSIKEVKENSVVFNNTPKEEPIDVIVFAT 329

Query: 278 GYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNL 309
           GY+  FPF+D+  ++ + G   L+ +I P +L
Sbjct: 330 GYSFAFPFLDESIVKVEDGQASLYKYIFPAHL 361

This protein is involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides. Form I catalyzes the N-oxygenation of secondary and tertiary amines.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 8

>sp|Q8HZ69|FMO2_GORGO Dimethylaniline monooxygenase [N-oxide-forming] 2 OS=Gorilla gorilla gorilla GN=FMO2 PE=3 SV=3

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 178/359 (49%), Gaps = 32/359 (8%)

Query: 4   DLGGVW----NSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYA 59
           D+GGVW    N +     +Y S+   + K  +   D+PMP+++P + ++S +L+Y R +A
Sbjct: 36  DIGGVWRFKENVEDGRASIYQSVVTNTSKEMSCFSDFPMPEDFPNFLHNSKLLEYFRIFA 95

Query: 60  KKFDVYNHSIFNTEVINLEQYEDI-----WEV-ELSNGKKKK--YDFIAVCNGAQRVARY 111
           KKFD+  +  F T V+++ +  D      W+V   SNGK++   +D + VC+G   +   
Sbjct: 96  KKFDLLKYIQFQTTVLSVRKCPDFSSSGQWKVVTQSNGKEQNAVFDAVMVCSGHHILPHI 155

Query: 112 P--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167
           P  ++ G   F G+  HS  YK PD    KR+LV+G GNSG DIAV+ S ++ +V+ STR
Sbjct: 156 PLKSFPGIERFKGQYFHSRQYKHPDGFEGKRILVIGMGNSGSDIAVELSKNAAQVFISTR 215

Query: 168 RGYHYYPKFI-DGKPTPQWMLQLGNKFSS-------KEETMAYIKQVFKLAGFDGVDYGL 219
            G     +   DG P   W      +F S       +      I+Q      F+  +YGL
Sbjct: 216 HGTWVMSRISEDGYP---WDAVFHTRFRSMLRNVLPRTAVKWMIEQQMN-RWFNHENYGL 271

Query: 220 KKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE-VDTIIYATG 278
            +P +      P++N  +   +  G I  K  +K L      F D T  E +D II+ATG
Sbjct: 272 -EPQNKYIMKEPVLNDDVPSRLLCGAIKVKSTVKELTETSAIFEDGTVEENIDVIIFATG 330

Query: 279 YNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLD--NIFFFGFVNAAAGLGDGLRLQGQFI 335
           Y+  FPF++   ++ +  +  L+ +I P +LD   +   G +     +     LQ +++
Sbjct: 331 YSFSFPFLEDSLVKVENNMVSLYKYIFPAHLDKSTLACIGLIQPLGSIFPTAELQARWV 389

This protein is involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides.

Gorilla gorilla gorilla (taxid: 9595)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 8

>sp|Q99518|FMO2_HUMAN Dimethylaniline monooxygenase [N-oxide-forming] 2 OS=Homo sapiens GN=FMO2 PE=1 SV=4

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 178/359 (49%), Gaps = 32/359 (8%)

Query: 4   DLGGVW----NSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYA 59
           D+GGVW    N +     +Y S+   + K  +   D+PMP+++P + ++S +L+Y R +A
Sbjct: 36  DIGGVWRFKENVEDGRASIYQSVVTNTSKEMSCFSDFPMPEDFPNFLHNSKLLEYFRIFA 95

Query: 60  KKFDVYNHSIFNTEVINLEQYEDI-----WEV-ELSNGKKKK--YDFIAVCNGAQRVARY 111
           KKFD+  +  F T V+++ +  D      W+V   SNGK++   +D + VC+G   +   
Sbjct: 96  KKFDLLKYIQFQTTVLSVRKCPDFSSSGQWKVVTQSNGKEQSAVFDAVMVCSGHHILPHI 155

Query: 112 P--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167
           P  ++ G   F G+  HS  YK PD    KR+LV+G GNSG DIAV+ S ++ +V+ STR
Sbjct: 156 PLKSFPGMERFKGQYFHSRQYKHPDGFEGKRILVIGMGNSGSDIAVELSKNAAQVFISTR 215

Query: 168 RGYHYYPKFI-DGKPTPQWMLQLGNKFSS-------KEETMAYIKQVFKLAGFDGVDYGL 219
            G     +   DG P   W      +F S       +      I+Q      F+  +YGL
Sbjct: 216 HGTWVMSRISEDGYP---WDSVFHTRFRSMLRNVLPRTAVKWMIEQQMN-RWFNHENYGL 271

Query: 220 KKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE-VDTIIYATG 278
            +P +      P++N  +   +  G I  K  +K L      F D T  E +D II+ATG
Sbjct: 272 -EPQNKYIMKEPVLNDDVPSRLLCGAIKVKSTVKELTETSAIFEDGTVEENIDVIIFATG 330

Query: 279 YNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLD--NIFFFGFVNAAAGLGDGLRLQGQFI 335
           Y+  FPF++   ++ +  +  L+ +I P +LD   +   G +     +     LQ +++
Sbjct: 331 YSFSFPFLEDSLVKVENNMVSLYKYIFPAHLDKSTLACIGLIQPLGSIFPTAELQARWV 389

Catalyzes the N-oxidation of certain primary alkylamines to their oximes via an N-hydroxylamine intermediate. Inactive toward certain tertiary amines, such as imipramine or chloropromazine. Can catalyze the S-oxidation of methimazole. The truncated form is catalytically inactive.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 8

>sp|Q8HZ70|FMO2_PANTR Dimethylaniline monooxygenase [N-oxide-forming] 2 OS=Pan troglodytes GN=FMO2 PE=3 SV=3

 Score =  144 bits (362), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 178/359 (49%), Gaps = 32/359 (8%)

Query: 4   DLGGVW----NSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYA 59
           D+GGVW    N +     +Y S+   + K  +   D+PMP+++P + ++S +L+Y R +A
Sbjct: 36  DIGGVWRFKENVEDGRASIYQSVITNTSKEMSCFSDFPMPEDFPNFLHNSKLLEYFRIFA 95

Query: 60  KKFDVYNHSIFNTEVINLEQYEDI-----WEV-ELSNGKKKK--YDFIAVCNGAQRVARY 111
           KKFD+  +  F T V+++ +  D      W+V   SNGK++   +D + VC+G   +   
Sbjct: 96  KKFDLLKYIQFQTTVLSVRKCPDFSSSGQWKVVTQSNGKEQSAVFDAVMVCSGHHILPHI 155

Query: 112 P--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167
           P  ++ G   F G+  HS  YK PD    KR+LV+G GNSG DIAV+ S ++ +V+ STR
Sbjct: 156 PLKSFPGIERFKGQYFHSRQYKHPDGFEGKRILVIGMGNSGSDIAVELSKNAAQVFISTR 215

Query: 168 RGYHYYPKFI-DGKPTPQWMLQLGNKFSS-------KEETMAYIKQVFKLAGFDGVDYGL 219
            G     +   DG P   W      +F S       +      I+Q      F+  +YGL
Sbjct: 216 HGTWVMSRISEDGYP---WDSVFHTRFRSMLRNVLPRTAVKWMIEQQMN-RWFNHENYGL 271

Query: 220 KKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE-VDTIIYATG 278
            +P +      P++N  +   +  G I  K  +K L      F D T  E +D II+ATG
Sbjct: 272 -EPQNKYIMKEPVLNDDVPSRLLCGAIKVKSTVKELTETSAIFEDGTVEENIDVIIFATG 330

Query: 279 YNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLD--NIFFFGFVNAAAGLGDGLRLQGQFI 335
           Y+  FPF++   ++ +  +  L+ +I P +LD   +   G +     +     LQ +++
Sbjct: 331 YSFSFPFLEDSLVKVENNMVSLYKYIFPAHLDKSTLACIGLIQPLGSIFPTAELQARWV 389

This protein is involved in the oxidative metabolism of a variety of xenobiotics such as drugs and pesticides.

Pan troglodytes (taxid: 9598)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	396
44662943	433	putative FAD-dependent monooxygenase [sy	0.997	0.912	0.775	0.0
407782426	444	flavin-containing monooxygenase [Oceanib	0.992	0.885	0.6	1e-147
417353262	441	Flavin-dependent monooxygenase [Serratia	0.997	0.895	0.596	1e-146
144897325	433	flavin-containing monooxygenase [Magneto	0.992	0.907	0.6	1e-145
242238865	434	flavin-containing monooxygenase [Dickeya	0.997	0.910	0.599	1e-144
270261889	434	hypothetical protein SOD_b00960 [Serrati	0.997	0.910	0.589	1e-143
417353286	434	Flavin-dependent monooxygenase [Serratia	0.997	0.910	0.586	1e-143
334130842	445	Putative flavin-containing monooxygenase	0.972	0.865	0.443	1e-101
117168596	439	AmbI [Sorangium cellulosum]	0.992	0.895	0.456	1e-101
240141783	430	putative flavin-containing monooxygenase	0.969	0.893	0.451	1e-95

>gi|44662943|gb|AAS47561.1| putative FAD-dependent monooxygenase [symbiont bacterium of Paederus fuscipes]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/397 (77%), Positives = 351/397 (88%), Gaps = 2/397 (0%)

Query: 2   ESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKK 61
           ESDLGGVWN +  CGRVYPSLHLISPKFNTQVPDYPMPD+YPVYPNH MML Y+RSYA+ 
Sbjct: 36  ESDLGGVWNREGKCGRVYPSLHLISPKFNTQVPDYPMPDHYPVYPNHKMMLAYMRSYARD 95

Query: 62  FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN--YSGYFS 119
           F VY H+IFNT V  LE   + WEVELS+G++K+Y+ +AVCNGAQRVAR+P+  + G F 
Sbjct: 96  FGVYEHAIFNTSVTRLEPDGEGWEVELSSGERKRYEVVAVCNGAQRVARFPDPPHPGTFQ 155

Query: 120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDG 179
           G++LHSMDYKSPD +R+KRVLVVGAGNSGCDIAVDASHH+E+VYHSTRRGYHY+PKFIDG
Sbjct: 156 GKVLHSMDYKSPDLVRDKRVLVVGAGNSGCDIAVDASHHAEQVYHSTRRGYHYFPKFIDG 215

Query: 180 KPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILY 239
           KPTPQWMLQLGNKF +KE+T+AY++QVFK+AGFDG+DYGLKKPDHPLD AHPIMNSQILY
Sbjct: 216 KPTPQWMLQLGNKFETKEQTLAYMQQVFKVAGFDGMDYGLKKPDHPLDGAHPIMNSQILY 275

Query: 240 HIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPD 299
           HIGHGDILPKD+I+   GN V F+D T  +VD IIYATGY+R FPFID   LEWK G+PD
Sbjct: 276 HIGHGDILPKDNIEYFEGNTVFFIDGTKADVDLIIYATGYDRDFPFIDHALLEWKDGLPD 335

Query: 300 LFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKND 359
           LFIHI PRNLDNIFFFGFVNAAAGLGDGLRLQGQF+RSY++A  +KSKGY KF+  K+ND
Sbjct: 336 LFIHIVPRNLDNIFFFGFVNAAAGLGDGLRLQGQFVRSYVRALQQKSKGYFKFIQTKQND 395

Query: 360 NPDLGQDYFIDSHRHLWEVDFWKFIKCARMYRDMLDE 396
           NPDLGQDYF+DSHRH WEVDFWKFIKCAR YR+MLDE
Sbjct: 396 NPDLGQDYFLDSHRHRWEVDFWKFIKCARRYREMLDE 432

Source: symbiont bacterium of Paederus fuscipes

Species: symbiont bacterium of Paederus fuscipes

Superkingdom: Bacteria

>gi|407782426|ref|ZP_11129638.1| flavin-containing monooxygenase [Oceanibaculum indicum P24] gi|407205791|gb|EKE75757.1| flavin-containing monooxygenase [Oceanibaculum indicum P24]

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 237/395 (60%), Positives = 289/395 (73%), Gaps = 2/395 (0%)

Query: 2   ESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKK 61
           ESD GGVWN+ A+CGR Y SLHLISPKFNTQ PD+PMP++YP YPNH +ML Y+R +A+ 
Sbjct: 39  ESDFGGVWNADAACGRAYESLHLISPKFNTQAPDFPMPEDYPPYPNHRLMLRYIRDFARA 98

Query: 62  FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN--YSGYFS 119
             +Y  + F   V  LE   D W +  + G    Y  + VCNG QRV   P+  Y G F+
Sbjct: 99  SGLYERTRFEAPVQRLEPVGDQWRLVTAAGHDALYPLVIVCNGLQRVPHLPDPAYPGSFA 158

Query: 120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDG 179
           GE+LHSMDYKS  Q+  KRVLV+G GNSGCDIAVDA HH+  V+HSTRRGY+Y PKFIDG
Sbjct: 159 GEVLHSMDYKSGRQVAGKRVLVIGGGNSGCDIAVDAVHHAASVHHSTRRGYYYQPKFIDG 218

Query: 180 KPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILY 239
           KPTPQWM++LGNKF  KE+T+AYI +VF+LAG+DG  YGL  PD+PLDAAHP+MNSQILY
Sbjct: 219 KPTPQWMMELGNKFPRKEDTLAYIAEVFRLAGYDGAAYGLPAPDYPLDAAHPVMNSQILY 278

Query: 240 HIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPD 299
           HIGHGD++PK D+    G  V F D +  E D I+YATGY R FPF+DK  LEWK GIPD
Sbjct: 279 HIGHGDVVPKGDVAAFEGRTVRFTDGSTAEFDVILYATGYKRDFPFLDKALLEWKSGIPD 338

Query: 300 LFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKND 359
           LF+H  PRN DN+ F GF+NAA GLGDGL+ QG +  +Y +A   +++G   FL AK+ D
Sbjct: 339 LFLHSTPRNHDNLLFMGFINAAGGLGDGLKTQGLYALTYARALFGRTRGLEAFLKAKQTD 398

Query: 360 NPDLGQDYFIDSHRHLWEVDFWKFIKCARMYRDML 394
           NPD+GQ YF+ S+RHLWE D WK +   R YRDML
Sbjct: 399 NPDIGQGYFVPSYRHLWEADLWKLLAQMRRYRDML 433

Source: Oceanibaculum indicum P24

Species: Oceanibaculum indicum

Genus: Oceanibaculum

Family: Rhodospirillaceae

Order: Rhodospirillales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|417353262|gb|AFX60310.1| Flavin-dependent monooxygenase [Serratia marcescens]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 237/397 (59%), Positives = 304/397 (76%), Gaps = 2/397 (0%)

Query: 2   ESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKK 61
           ESD GGVWN+ + CGR YPSLHLISPK NTQ PD+PMP++YP YPNH++M  Y+R YA+ 
Sbjct: 44  ESDFGGVWNADSRCGRTYPSLHLISPKVNTQYPDFPMPEDYPHYPNHTLMQQYIRHYART 103

Query: 62  FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN--YSGYFS 119
           F VY  + FN  V+ +E  ++ W+VELS G++K Y F+ V NG QR ARYP   Y G+F+
Sbjct: 104 FGVYEKAHFNVAVVRIEPQDNGWQVELSTGERKFYSFVLVSNGMQREARYPEPAYRGHFT 163

Query: 120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDG 179
           G+I+HS+DY++P++I+ KRVL++GAGNSGCDIAVDA HH + VYHSTRRGY+Y PKFI+G
Sbjct: 164 GDIMHSIDYRTPERIKGKRVLIIGAGNSGCDIAVDAVHHCQAVYHSTRRGYYYQPKFING 223

Query: 180 KPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILY 239
            PTP+WM  LGNKF ++EET+AYI+QVFKLAG+DG D+GLKKPD+PLDA+HPIMNSQ+LY
Sbjct: 224 LPTPRWMEGLGNKFDTREETLAYIQQVFKLAGYDGTDFGLKKPDYPLDASHPIMNSQLLY 283

Query: 240 HIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPD 299
            IGHGDI PK D++    N V F D +H+EVDT+IYATGYNR FPF+D + LE K GIPD
Sbjct: 284 FIGHGDIQPKGDVREFRDNTVIFDDGSHVEVDTLIYATGYNRRFPFLDSKYLELKNGIPD 343

Query: 300 LFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKND 359
            F+HI P+N +N+ F G++N+A GLG   R  G F+  Y++A+  +S G   F   KK  
Sbjct: 344 CFLHIVPKNFNNLLFVGYINSATGLGVSARSHGLFVVDYLKAYFTQSAGLHDFTRMKKEQ 403

Query: 360 NPDLGQDYFIDSHRHLWEVDFWKFIKCARMYRDMLDE 396
           NPDLGQ Y+I S RH WEVD WKF+K    YR++L+ 
Sbjct: 404 NPDLGQHYYIGSFRHQWEVDLWKFLKLLAQYREVLNR 440

Source: Serratia marcescens

Species: Serratia marcescens

Genus: Serratia

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|144897325|emb|CAM74189.1| flavin-containing monooxygenase [Magnetospirillum gryphiswaldense MSR-1]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 237/395 (60%), Positives = 292/395 (73%), Gaps = 2/395 (0%)

Query: 2   ESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKK 61
           E+D GGVWNS A+CGR Y SLHLISPKFNTQVPD+PMPD YPVYPNH  ML Y+R+YA  
Sbjct: 36  EADFGGVWNSGAACGRTYDSLHLISPKFNTQVPDFPMPDEYPVYPNHKQMLAYIRAYADH 95

Query: 62  FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNY--SGYFS 119
           F +  H+ FN  +  L + +  W ++   G  + YD + VC G  R   +P    +G FS
Sbjct: 96  FGLRRHARFNAPITRLTRQDQGWRLQSGAGHDQHYDLVVVCTGLHREPLFPEPMPAGSFS 155

Query: 120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDG 179
           GE+LH+ DYKS DQ+R KRVLVVG GNSGCD A DA H +  V+HSTRRGY+Y PKFI G
Sbjct: 156 GEVLHARDYKSLDQLRGKRVLVVGGGNSGCDFAADAVHGAAHVFHSTRRGYYYQPKFIAG 215

Query: 180 KPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILY 239
           KPTPQWM++LG KF +++ETMAYI+QVFKLAG DG DYGL +PD+PLD AHP+MNS +LY
Sbjct: 216 KPTPQWMMELGAKFKTRQETMAYIQQVFKLAGCDGTDYGLPQPDYPLDGAHPVMNSLLLY 275

Query: 240 HIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPD 299
           HIGHGDI PK D++  NG  V F D +  E+D I+YATGY R FPF+D+E LEWK GIPD
Sbjct: 276 HIGHGDITPKPDLEGFNGKTVTFKDGSTAEIDLILYATGYRRDFPFLDRELLEWKSGIPD 335

Query: 300 LFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKND 359
           LF+H  PRN D++ F GF+N+AAGLGDGL+ QG F+ +Y +A   ++ G  KFL AK+ D
Sbjct: 336 LFLHSTPRNHDDLLFMGFINSAAGLGDGLKTQGLFVLNYARALAGRTPGLQKFLAAKRAD 395

Query: 360 NPDLGQDYFIDSHRHLWEVDFWKFIKCARMYRDML 394
            PDLGQ+YF+ S+RHLWE D WK +   R YRDML
Sbjct: 396 QPDLGQEYFVKSYRHLWEADLWKLLAHMRHYRDML 430

Source: Magnetospirillum gryphiswaldense MSR-1

Species: Magnetospirillum gryphiswaldense

Genus: Magnetospirillum

Family: Rhodospirillaceae

Order: Rhodospirillales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|242238865|ref|YP_002987046.1| flavin-containing monooxygenase [Dickeya dadantii Ech703] gi|242130922|gb|ACS85224.1| Flavin-containing monooxygenase [Dickeya dadantii Ech703]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 238/397 (59%), Positives = 299/397 (75%), Gaps = 2/397 (0%)

Query: 2   ESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKK 61
           ESD GGVWN+ + CGR YPSLHLISPK NTQ PD+PMP++YP YP+H +M  Y+  YAK 
Sbjct: 37  ESDFGGVWNADSRCGRTYPSLHLISPKVNTQYPDFPMPEDYPHYPSHKLMHRYVCDYAKT 96

Query: 62  FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN--YSGYFS 119
           F VY  + FN  V  +E   D W+VELS G++K Y F+ V NG QR ARYP   Y G+F+
Sbjct: 97  FGVYEKAHFNVAVTRIEPQADGWQVELSTGERKFYAFVLVSNGMQREARYPEPAYPGHFT 156

Query: 120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDG 179
           GE++HS+DY++P++I+ KRVL++GAGNSGCDIAVDA HH   VYHSTRRGY+Y PKFI+G
Sbjct: 157 GEVMHSIDYRTPERIKGKRVLIIGAGNSGCDIAVDAVHHCSAVYHSTRRGYYYQPKFING 216

Query: 180 KPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILY 239
            PTP+WM  LGNKF+++EET+AYI+QVFKLAG+DG DYGLKKPD+PLDA+HPIMNSQ+LY
Sbjct: 217 MPTPRWMEGLGNKFNTREETIAYIQQVFKLAGYDGTDYGLKKPDYPLDASHPIMNSQLLY 276

Query: 240 HIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPD 299
            IGHGDI  K D+     N V F D +HI+VDTIIYATGYNR F F+D + LE K GIPD
Sbjct: 277 FIGHGDIQAKGDVSAFQDNTVFFEDGSHIDVDTIIYATGYNRRFSFLDNKYLEMKQGIPD 336

Query: 300 LFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKND 359
            F+HI P+N DN+ F G++N+A GLG   R  G F+  Y++A+  ++KG   F   KK  
Sbjct: 337 CFLHIVPKNFDNLLFVGYINSATGLGVSARSHGLFVVDYLKAYFLQAKGLHDFSQMKKEQ 396

Query: 360 NPDLGQDYFIDSHRHLWEVDFWKFIKCARMYRDMLDE 396
           +PDLGQ+Y+I S RH WEVD WKF+K    YRD+L+ 
Sbjct: 397 DPDLGQNYYIGSFRHQWEVDLWKFLKLLAQYRDVLNR 433

Source: Dickeya dadantii Ech703

Species: Dickeya dadantii

Genus: Dickeya

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|270261889|ref|ZP_06190161.1| hypothetical protein SOD_b00960 [Serratia odorifera 4Rx13] gi|270043765|gb|EFA16857.1| hypothetical protein SOD_b00960 [Serratia odorifera 4Rx13]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 234/397 (58%), Positives = 303/397 (76%), Gaps = 2/397 (0%)

Query: 2   ESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKK 61
           ESD GGVWN+ + CGR YPSLHLISPK NTQ PD+PMP++YP YPNH +M  Y+  YA+ 
Sbjct: 37  ESDFGGVWNADSRCGRTYPSLHLISPKVNTQYPDFPMPEDYPHYPNHKLMHQYVCHYART 96

Query: 62  FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN--YSGYFS 119
           F VY  + FN  V  +E  ++ W+VELS G++K Y F+ V NG QR ARYP   Y G+F+
Sbjct: 97  FGVYEKAHFNVAVTRIEPQDNGWQVELSTGERKFYSFVLVSNGMQREARYPEPAYRGHFT 156

Query: 120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDG 179
           G+I+HS+DY++P++I+ KRVL++GAGNSGCDIAVDA HH + VYHSTRRGY+Y PKFI+G
Sbjct: 157 GDIMHSIDYRTPERIKGKRVLIIGAGNSGCDIAVDAVHHCQAVYHSTRRGYYYQPKFING 216

Query: 180 KPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILY 239
            PTP+WM  LGNKF+++EET+AYI+QVFKLAG+DG D+GLKKPD+PLDA+HPIMNSQ+LY
Sbjct: 217 MPTPRWMEGLGNKFNTREETLAYIQQVFKLAGYDGTDFGLKKPDYPLDASHPIMNSQLLY 276

Query: 240 HIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPD 299
            IGHGDI PK D+     N V F D +H+EVDT+IYATGY+R FPF+D + L+ K GIPD
Sbjct: 277 FIGHGDIQPKVDVSEFRDNTVIFEDGSHVEVDTLIYATGYHRRFPFLDSKYLDMKNGIPD 336

Query: 300 LFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKND 359
            F+HI P+N +N+ F G++N+A GLG   R  G F+  Y++A+  +S+G   F   KK  
Sbjct: 337 CFLHIVPKNFNNLLFVGYINSATGLGVSARSHGLFVVDYLKAYFAQSQGLHDFTRIKKEQ 396

Query: 360 NPDLGQDYFIDSHRHLWEVDFWKFIKCARMYRDMLDE 396
           NPDLGQ+Y+I S RH WEVD WKF+K    YR++L+ 
Sbjct: 397 NPDLGQNYYIGSFRHQWEVDLWKFLKLLAQYREVLNR 433

Source: Serratia odorifera 4Rx13

Species: Serratia plymuthica

Genus: Serratia

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|417353286|gb|AFX60333.1| Flavin-dependent monooxygenase [Serratia plymuthica]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 233/397 (58%), Positives = 302/397 (76%), Gaps = 2/397 (0%)

Query: 2   ESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKK 61
           ESD GGVWN+ + CGR YPSLHLISPK NTQ PD+PMP++YP YPNH +M  Y+  YA+ 
Sbjct: 37  ESDFGGVWNADSRCGRTYPSLHLISPKVNTQYPDFPMPEDYPHYPNHKLMHQYVCHYART 96

Query: 62  FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN--YSGYFS 119
           F VY  + FN  V  +E  +  W+VELS G++K Y F+ V NG QR ARYP   Y G+F+
Sbjct: 97  FGVYEKAHFNVAVTRIEPQDKGWQVELSTGERKFYSFVLVSNGMQREARYPESAYRGHFA 156

Query: 120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDG 179
           G+I+HS+DY++P++I+ KRVL++GAGNSGCDIAVDA HH + VYHSTRRGY+Y PKFI+G
Sbjct: 157 GDIMHSIDYRTPERIKGKRVLIIGAGNSGCDIAVDAVHHCQAVYHSTRRGYYYQPKFING 216

Query: 180 KPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILY 239
            PTP+WM  LGNKF+++EET+AYI+QVFKLAG+DG D+GLKKPD+PLDA+HPIMNSQ+LY
Sbjct: 217 MPTPRWMEGLGNKFNTREETLAYIQQVFKLAGYDGTDFGLKKPDYPLDASHPIMNSQLLY 276

Query: 240 HIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPD 299
            IGHGDI PK D+    G+ V F D + +EVDT+IYATGY+R FPF+D + L+ K GIPD
Sbjct: 277 FIGHGDIQPKGDVSEFRGHTVIFEDGSQVEVDTLIYATGYHRRFPFLDSKYLDMKNGIPD 336

Query: 300 LFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKND 359
            F+HI P+N +N+ F G++N+A GLG   R  G F+  Y++A+  +S+G   F   KK  
Sbjct: 337 CFLHIVPKNFNNLLFVGYINSATGLGVSARSHGLFVVDYLKAYFAQSQGLHDFTQMKKEQ 396

Query: 360 NPDLGQDYFIDSHRHLWEVDFWKFIKCARMYRDMLDE 396
           NPDLGQ+Y+I S RH WEVD WKF+K    YR++L+ 
Sbjct: 397 NPDLGQNYYIGSFRHQWEVDLWKFLKLLAQYREVLNR 433

Source: Serratia plymuthica

Species: Serratia plymuthica

Genus: Serratia

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|334130842|ref|ZP_08504612.1| Putative flavin-containing monooxygenase [Methyloversatilis universalis FAM5] gi|333443918|gb|EGK71875.1| Putative flavin-containing monooxygenase [Methyloversatilis universalis FAM5]

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 171/386 (44%), Positives = 248/386 (64%), Gaps = 1/386 (0%)

Query: 2   ESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKK 61
            S LGG W       ++Y S+HLIS + NTQ  D PMPD+YP YP HS M  YL S A++
Sbjct: 37  SSGLGGNWQPSGPASKMYASVHLISSRRNTQFSDLPMPDSYPHYPRHSQMYAYLMSVAER 96

Query: 62  FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGE 121
           + V  H+ F+T V+        W  EL++G  ++Y  + V NG  R+   P + G+F GE
Sbjct: 97  YAVAAHTRFDTRVLRARPDGGGWRCELADGGVRRYAHLIVANGLLRIPLVPKFEGHFDGE 156

Query: 122 ILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKP 181
            +HS DY+S DQ R KRVLVVG GNSGCDIAVDA+ +++  +HSTRRGYHY PKF+DG+P
Sbjct: 157 SVHSGDYRSADQFRGKRVLVVGGGNSGCDIAVDAALNADAAFHSTRRGYHYMPKFVDGRP 216

Query: 182 TPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI 241
           T +W++ +  KF+  +    ++  VFKLAG+DG D+GL  PDH +DAAHPIMNSQ+LYHI
Sbjct: 217 TQEWLMDIAPKFTDAQAYWDHVSAVFKLAGYDGTDFGLPAPDHRIDAAHPIMNSQVLYHI 276

Query: 242 GHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLF 301
           GHGD+ P+ DI+ ++G  V F D +  ++D I++ATG+     F D    + ++ +  LF
Sbjct: 277 GHGDLAPRPDIRRIDGRTVEFTDGSREQIDLILWATGFRTDLSFFDPADFDARVDLDRLF 336

Query: 302 IHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKN-DN 360
           + + P+  DN+ F G++N  +GLG+ L +  +F+ + + A I  S  + +    K+  + 
Sbjct: 337 LRMVPQRHDNLLFVGYLNTPSGLGNVLNITARFVAACLSARIAGSDNFRRLQQLKQQPER 396

Query: 361 PDLGQDYFIDSHRHLWEVDFWKFIKC 386
            DLGQ  F+D+ RH +EVD WK+I+ 
Sbjct: 397 LDLGQGRFMDTDRHRYEVDLWKYIRA 422

Source: Methyloversatilis universalis FAM5

Species: Methyloversatilis universalis

Genus: Methyloversatilis

Family: Rhodocyclaceae

Order: Rhodocyclales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|117168596|gb|ABK32261.1| AmbI [Sorangium cellulosum]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/394 (45%), Positives = 249/394 (63%), Gaps = 1/394 (0%)

Query: 2   ESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKK 61
           + D GG W      G VY S HLIS K NTQ  D+PMP++YP YP+H+ ML YLRS A  
Sbjct: 36  DEDFGGTWALSQRSGLVYKSTHLISSKKNTQFLDFPMPEDYPHYPSHAQMLSYLRSLATH 95

Query: 62  FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGE 121
           + +Y+ ++F T V ++E       V LSNG+ + +  + V NG  R    P Y G FSGE
Sbjct: 96  YGLYDRALFGTRVEHVEPNGAGCRVRLSNGETRTFSAVVVANGRMRTPLIPRYPGVFSGE 155

Query: 122 ILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKP 181
            +HS  YKS +  R KRVLV+G GNSGCDIAVDA+  +E+ +HSTRRGYHY PKFI GKP
Sbjct: 156 TMHSAAYKSHEVFRGKRVLVIGGGNSGCDIAVDAALAAEQTFHSTRRGYHYMPKFIHGKP 215

Query: 182 TPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI 241
           T +W++ +G+KF S+++  +++++ FK AG+D VDYGL +PDH +  AHPI+NS +LY+I
Sbjct: 216 TQEWLMDMGSKFRSQDDYWSFVQREFKAAGYDPVDYGLPRPDHAIHEAHPILNSLVLYYI 275

Query: 242 GHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLF 301
           GHGDI PK D++   G  V FVD T  EVD I+YATGY   FPF+  E L    G  +LF
Sbjct: 276 GHGDIHPKPDVRRFEGRTVEFVDGTRAEVDLILYATGYEMDFPFL-AEDLRPSDGALELF 334

Query: 302 IHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNP 361
           + +  R  D++ F G+ NAA+GLG+ L   G  +  Y+ A  + +  +       +   P
Sbjct: 335 LSMFHRKADSLVFVGYFNAASGLGNLLNCGGALVTDYLVAREKNTDAFRVLRRLIQGPEP 394

Query: 362 DLGQDYFIDSHRHLWEVDFWKFIKCARMYRDMLD 395
           D+G+  F++S RH  E D WK +K    +R +L+
Sbjct: 395 DIGRGRFLNSPRHRVETDLWKAMKVMNFFRSVLN 428

Source: Sorangium cellulosum

Species: Sorangium cellulosum

Genus: Sorangium

Family: Polyangiaceae

Order: Myxococcales

Class: Deltaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|240141783|ref|YP_002966291.1| putative flavin-containing monooxygenase [Methylobacterium extorquens AM1] gi|418058849|ref|ZP_12696813.1| Flavin-containing monooxygenase [Methylobacterium extorquens DSM 13060] gi|240011725|gb|ACS42950.1| Putative flavin-containing monooxygenase [Methylobacterium extorquens AM1] gi|373567590|gb|EHP93555.1| Flavin-containing monooxygenase [Methylobacterium extorquens DSM 13060]

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 174/385 (45%), Positives = 235/385 (61%), Gaps = 1/385 (0%)

Query: 3   SDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKF 62
           S +GG W       ++Y S HLIS K NTQ  DYPMPD+YP YP+HS+M DYL+S     
Sbjct: 36  SRVGGNWQPDGPASKMYRSAHLISSKRNTQFSDYPMPDDYPHYPHHSLMHDYLQSVVAST 95

Query: 63  DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI 122
           DV     F T V +       W +    G    Y  + VC+G  R    P Y G F GE 
Sbjct: 96  DVQRSIRFGTTVTSARHDGSGWRLRFKEGGDAFYGTLIVCSGLLRRPIIPFYPGRFDGET 155

Query: 123 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPT 182
           +H+++Y+S   +  KRVLVVG GNSGCDIAVDA H + KV+HSTRRGYHY PKFI G+PT
Sbjct: 156 IHAVEYRSSSMLEGKRVLVVGGGNSGCDIAVDAVHGAAKVFHSTRRGYHYMPKFIAGRPT 215

Query: 183 PQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIG 242
            +W++ +  +FS  +    ++ Q F+LAGFDG D+GL  PDH + +AHPI+NSQIL+HIG
Sbjct: 216 QEWLMDIAPEFSDPDAYWEHVSQTFRLAGFDGRDFGLPPPDHGIQSAHPILNSQILFHIG 275

Query: 243 HGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFI 302
           HGDI P  DI  ++G  + F D T  EVD II+ATGY+   PF +K   +    +   F+
Sbjct: 276 HGDISPVGDIVKMSGRQIEFSDGTREEVDLIIWATGYDPDLPFFNKSDFDAVEDLNSAFL 335

Query: 303 HIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNP- 361
            +A R  D++ + G++N  +GLG+   + G F  +Y+Q     + G+ KF   K+ + P 
Sbjct: 336 KVASRRYDDLLYVGYLNTPSGLGNVGNVLGSFTAAYLQGRAGATAGWQKFQLLKRENAPV 395

Query: 362 DLGQDYFIDSHRHLWEVDFWKFIKC 386
           DLGQ+ F+ + RH  EVD WKFIK 
Sbjct: 396 DLGQERFMRTKRHSHEVDLWKFIKT 420

Source: Methylobacterium extorquens AM1

Species: Methylobacterium extorquens

Genus: Methylobacterium

Family: Methylobacteriaceae

Order: Rhizobiales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	396
UNIPROTKB|Q48I18	456	PSPPH_2775 "Monooxygenase, fla	0.924	0.802	0.341	3.5e-59
UNIPROTKB|Q5LVA4	438	SPO0798 "Monooxygenase domain	0.886	0.801	0.354	3.6e-57
TIGR_CMR|SPO_0798	438	SPO_0798 "monooxygenase domain	0.886	0.801	0.354	3.6e-57
UNIPROTKB|Q0BXY3	443	HNE_2983 "Monooxygenase, flavi	0.929	0.830	0.339	1.9e-53
UNIPROTKB|A6QLN7	533	FMO5 "Dimethylaniline monooxyg	0.939	0.697	0.296	5.3e-40
UNIPROTKB|E2QUP4	533	FMO5 "Dimethylaniline monooxyg	0.939	0.697	0.301	7.8e-39
RGD|1595097	538	LOC685351 "similar to flavin c	0.825	0.607	0.311	7.8e-39
RGD|1559819	536	Fmo13 "flavin-containing monoo	0.717	0.529	0.339	2.6e-38
MGI|MGI:1310004	533	Fmo5 "flavin containing monoox	0.931	0.692	0.297	7e-38
MGI|MGI:1310002	532	Fmo1 "flavin containing monoox	0.772	0.575	0.332	1.1e-37

UNIPROTKB|Q48I18 PSPPH_2775 "Monooxygenase, flavin-binding family" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 128/375 (34%), Positives = 204/375 (54%)

Query:     4 DLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFD 63
             ++GGVW+       +Y S H IS +  +   DYPMP ++P YP++  + +Y+RS+A  FD
Sbjct:    32 EVGGVWDINNPGTPMYQSAHFISSRDQSGFIDYPMPAHFPDYPSNRQIFEYVRSFAVAFD 91

Query:    64 VYNHSIFNTEVINLEQYED-IWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI 122
             +Y+   FNT V ++E+ +D  W V L++G++++Y  +    G       P   G F G +
Sbjct:    92 LYDRIRFNTAVKDVEKEQDGRWLVTLASGERRRYRAVVCATGCNWDPNMPEVKGQFEGTV 151

Query:   123 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPT 182
              HS+ YK+PD+ + KRV+V+GA NSG DIA DA+ H++K + S RRGYH  PK + G P 
Sbjct:   152 RHSVTYKNPDEFKGKRVMVIGADNSGADIACDAAKHADKAFISMRRGYHLIPKHLFGMPV 211

Query:   183 PQWMLQLGNKFSSKEETMA--YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYH 240
              ++    G K       +A    + + ++   D   +GL +PDH L  +HP++N+Q+L++
Sbjct:   212 DEF----GEKGPQLPMWLARPVFQTILRVINGDTRRFGLPRPDHKLFESHPLLNTQLLHY 267

Query:   241 IGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDL 300
             + HGDI  K D+ +  G  V F D T   +D ++YATGY    P+  K   EW+ G P L
Sbjct:   268 LQHGDIQVKPDVSHYEGQHVVFKDGTREPLDLVLYATGYKWSCPYAAKY-FEWQGGRPRL 326

Query:   301 FIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDN 360
             ++ I  R   N+F  G+V   +        +   +  Y++  + +      F      D+
Sbjct:   327 YLSIFSREHHNLFGIGYVETNSSAYKLFDSEAHAVACYLRDQLHQKTQASHFDQLIATDD 386

Query:   361 PDL-GQDYFIDSHRH 374
             PDL G   F+ S RH
Sbjct:   387 PDLSGGIKFVKSQRH 401

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

GO:0048037 "cofactor binding" evidence=ISS

UNIPROTKB|Q5LVA4 SPO0798 "Monooxygenase domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 130/367 (35%), Positives = 192/367 (52%)

Query:     1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAK 60
             + SD+GG+W+       +Y S HLIS K  T+  D+PM +    YP+H  +  Y  ++A 
Sbjct:    36 LHSDVGGLWDIDGPRSTMYESAHLISSKRMTEFTDFPMEEAVAEYPSHRELKRYFHAFAA 95

Query:    61 KFDVYNHSIFNTEVINLEQYEDI---WEV---ELSNGKKKKYDFIAVCNGAQRVARYPNY 114
             ++ + +H  F  EV+  E   +    W V   +      + Y  + + NG       P +
Sbjct:    96 RYGLRDHYRFGAEVLRCEPLGEPGAGWRVIWRDAEGEHTETYAGVMIANGTLSEPNMPTF 155

Query:   115 SGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYP 174
              G F GE++HS  Y+ P Q   KRVL+VGAGNSGCDIAVDA HH      S RRGY++ P
Sbjct:   156 QGRFDGELIHSSAYRHPSQFDGKRVLIVGAGNSGCDIAVDAIHHGALCDLSMRRGYYFVP 215

Query:   175 KFIDGKP--TPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPI 232
             K++ GKP  T   M++L      + + M     + K    D   YG  KPD+ L  +HP+
Sbjct:   216 KYVFGKPADTLGGMIKLPMWLKRRVDGM-----ILKWFVGDPQKYGFPKPDYQLYESHPV 270

Query:   233 MNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLE 292
             +NS +LYH GHGD+  + DI   +G  V F D +  E D I+ ATGY   +PFID++ L 
Sbjct:   271 VNSLVLYHAGHGDLRIRPDIDRFDGRRVIFADGSSEEYDMILAATGYKLFYPFIDRDLLN 330

Query:   293 WKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLG-DGLRLQGQFIRSYIQAFIRKSKGYLK 351
             W+   P L+++      D++F  G + A+ GLG  G   Q + +  YI   +R+      
Sbjct:   331 WQGDAPHLYLNALHPERDDLFVLGMIEAS-GLGWQGRHEQAEMVARYITG-LRRGGAAAA 388

Query:   352 FLNAKKN 358
              L A K+
Sbjct:   389 ELKAAKS 395

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0798 SPO_0798 "monooxygenase domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 130/367 (35%), Positives = 192/367 (52%)

Query:     1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAK 60
             + SD+GG+W+       +Y S HLIS K  T+  D+PM +    YP+H  +  Y  ++A 
Sbjct:    36 LHSDVGGLWDIDGPRSTMYESAHLISSKRMTEFTDFPMEEAVAEYPSHRELKRYFHAFAA 95

Query:    61 KFDVYNHSIFNTEVINLEQYEDI---WEV---ELSNGKKKKYDFIAVCNGAQRVARYPNY 114
             ++ + +H  F  EV+  E   +    W V   +      + Y  + + NG       P +
Sbjct:    96 RYGLRDHYRFGAEVLRCEPLGEPGAGWRVIWRDAEGEHTETYAGVMIANGTLSEPNMPTF 155

Query:   115 SGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYP 174
              G F GE++HS  Y+ P Q   KRVL+VGAGNSGCDIAVDA HH      S RRGY++ P
Sbjct:   156 QGRFDGELIHSSAYRHPSQFDGKRVLIVGAGNSGCDIAVDAIHHGALCDLSMRRGYYFVP 215

Query:   175 KFIDGKP--TPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPI 232
             K++ GKP  T   M++L      + + M     + K    D   YG  KPD+ L  +HP+
Sbjct:   216 KYVFGKPADTLGGMIKLPMWLKRRVDGM-----ILKWFVGDPQKYGFPKPDYQLYESHPV 270

Query:   233 MNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLE 292
             +NS +LYH GHGD+  + DI   +G  V F D +  E D I+ ATGY   +PFID++ L 
Sbjct:   271 VNSLVLYHAGHGDLRIRPDIDRFDGRRVIFADGSSEEYDMILAATGYKLFYPFIDRDLLN 330

Query:   293 WKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLG-DGLRLQGQFIRSYIQAFIRKSKGYLK 351
             W+   P L+++      D++F  G + A+ GLG  G   Q + +  YI   +R+      
Sbjct:   331 WQGDAPHLYLNALHPERDDLFVLGMIEAS-GLGWQGRHEQAEMVARYITG-LRRGGAAAA 388

Query:   352 FLNAKKN 358
              L A K+
Sbjct:   389 ELKAAKS 395

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0BXY3 HNE_2983 "Monooxygenase, flavin-binding family" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 137/404 (33%), Positives = 210/404 (51%)

Query:     2 ESD-LGGVW-----NSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYL 55
             +SD +GG W     N  +SC   Y SLH+ + K+     DYP+P ++P +P+H+ +L Y 
Sbjct:    39 KSDNIGGNWYYMNPNGVSSC---YQSLHIDTSKWRLAFEDYPVPGDWPDFPHHAQLLQYF 95

Query:    56 RSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKKKKYDFIAVCNGAQRVARYPNY 114
               Y   F +     FNT V ++    +  + V LS G+ + YD + V NG    AR P Y
Sbjct:    96 HDYVDHFGLRETITFNTSVEDVADLPNGRYRVTLSTGETRDYDAVCVANGHHWDARTPTY 155

Query:   115 SGYFSGEILHSMDYKSPDQ---IRNKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG 169
              G F+G  +HS  Y+ P +    R KR+++VGAGNS  DI+ + S    +EK++ S RRG
Sbjct:   156 PGTFTGYQVHSHHYRDPFEPFDFRGKRIMIVGAGNSAMDISSELSQRPIAEKLFISMRRG 215

Query:   170 YHYYPKFIDGKPT-----PQWM-LQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPD 223
                 PK++DG+P      P WM   LG   + K+     IK+   +   +  DYGL KPD
Sbjct:   216 VWVMPKYMDGRPADKAVLPAWMPTSLGRSLAKKK-----IKKT--IGNME--DYGLPKPD 266

Query:   224 H-PLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRH 282
             H PL+  HP ++ + L  +G GDILPK  I   +G  VHF D T  E+D I++ATGYN  
Sbjct:   267 HEPLEG-HPSVSGEFLTRVGCGDILPKPGIDRFDGKTVHFTDGTSEEIDAIVWATGYNTS 325

Query:   283 FPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA- 341
             FPF  +++L  K  +  L+  +     + +FF G       L +    Q + + + +Q  
Sbjct:   326 FPFFKQDELTPKDNVFSLYKRMVKPGRETLFFLGLAQPLPTLVNFAEQQSKLVAAALQGR 385

Query:   342 FIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDFWKFIK 385
             +   S   +  +    ++   LG  +F DS RH  +VDF  +++
Sbjct:   386 YAFPSHEEMDRVTVA-DEQAHLG--HFYDSPRHRMQVDFNLYVR 426

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|A6QLN7 FMO5 "Dimethylaniline monooxygenase [N-oxide-forming]" [Bos taurus (taxid:9913)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 119/401 (29%), Positives = 196/401 (48%)

Query:     4 DLGGVWNSQASC--GR--VYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYA 59
             D+GG+W  Q     GR  +Y S+ + + K      DYP+PD+YP + ++S +L+Y R YA
Sbjct:    37 DIGGLWRFQEEPEEGRASIYKSVIINTSKEMMCFSDYPIPDHYPNFMHNSQVLEYFRMYA 96

Query:    60 KKFDVYNHSIFNTEVINLEQYEDI-----WEVEL-SNGKKKKYDF--IAVCNGAQRVARY 111
             K+FD+  +  F T V ++++  D      WEV   S GKK+ Y F  + VC G    A  
Sbjct:    97 KEFDLLKYIQFKTTVCSVKKQPDFPTSGQWEVVTESEGKKEVYVFDGVMVCTGHHTYAHL 156

Query:   112 P--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167
             P  ++ G   F G+  HS DYK+PD    KRV+++G GNSG D+AV+ SH +++V+ STR
Sbjct:   157 PLESFPGIEKFKGQYFHSRDYKNPDSFTGKRVIIIGIGNSGGDLAVEISHRAKQVFLSTR 216

Query:   168 RGYHYYPKFID-GKPTPQWMLQLGN----KFSSKEETMAYIKQVFKLAGFDGVDYGLKKP 222
             RG     +  D G P    +    N    K   +  T  Y+++      F+   +GLK P
Sbjct:   217 RGAWVLNRVGDYGYPFDTILSSRFNHLLKKIIGESATNRYLEKKINQR-FNHEMFGLK-P 274

Query:   223 DHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE-VDTIIYATGYNR 281
              H   + HP +N  +   I  G +  K ++K        F D +  + +D +I+ATGY+ 
Sbjct:   275 KHRALSQHPTINDDLPNRIISGFVKVKTNVKEFTETAAIFEDGSREDDIDAVIFATGYSF 334

Query:   282 HFPFIDKEKLEWKLGIPDLFIHIAPRNLDN--IFFFGFVNAAAGLGDGLRLQGQFIRSYI 339
              FPF++      K  +  L+  + P NL+   +   G +     +     LQG++     
Sbjct:   335 AFPFLEDSVKVVKNKV-SLYKKVFPPNLEKPTLAIIGLIQPLGAIMPISELQGRWATQVF 393

Query:   340 QAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDF 380
             +  ++      + +        D+ +  F++S RH  + D+
Sbjct:   394 KG-LKTLPPQSEMMTEIAKVQEDMAKQ-FVESQRHTIQGDY 432

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0031227 "intrinsic to endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|E2QUP4 FMO5 "Dimethylaniline monooxygenase [N-oxide-forming]" [Canis lupus familiaris (taxid:9615)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 121/401 (30%), Positives = 195/401 (48%)

Query:     4 DLGGVWNSQASC--GR--VYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYA 59
             D+GG+W  Q +   GR  +Y S+ + + K      DYP+PD+YP + ++S +L+Y R YA
Sbjct:    37 DIGGLWRFQENPEEGRASIYKSVIINTSKEMMCFSDYPIPDHYPNFMHNSQVLEYFRMYA 96

Query:    60 KKFDVYNHSIFNTEVINLEQYEDI-----WEVEL-SNGKKKK--YDFIAVCNGAQRVARY 111
             K+FD+  +    T V ++++  D      WEV   S GKK+   +D + VC G    A  
Sbjct:    97 KEFDLLKYIQLKTTVCSVKKQPDFSTSGQWEVVTESEGKKEVHVFDGVMVCTGHHTNAHL 156

Query:   112 P--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167
             P  ++ G   F G+  HS DYK+P+    KRV+++G GNSG D+AV+  H +++V+ STR
Sbjct:   157 PLESFPGIEKFKGQYFHSRDYKNPEIFAGKRVIIIGIGNSGGDLAVEICHTAKQVFLSTR 216

Query:   168 RGYHYYPKFID-GKPTPQWMLQLGNKFSSKEETMAYIKQVF--KL-AGFDGVDYGLKKPD 223
             RG     +  D G P    +    N F SK    + I      K+   FD   +GLK P 
Sbjct:   217 RGAWILNRVADYGYPFDVLLSSRFNYFLSKICGQSLINNFLEKKMNQRFDHEMFGLK-PK 275

Query:   224 HPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE-VDTIIYATGYNRH 282
             H   + HP +N  +   I  G +  K ++K        F D +  + +D +I+ATGY   
Sbjct:   276 HRALSQHPTVNDDLPNRIISGLVKVKGNVKEFTETAAIFEDGSREDNIDAVIFATGYTFA 335

Query:   283 FPFIDKEKLEWKLGIPDLFIHIAPRNLDN--IFFFGFVNAAAGLGDGLRLQGQFIRSYIQ 340
             FPF+ K+ +        L+  + P NL+   +   G +     +     LQG+++    +
Sbjct:   336 FPFL-KDSVPVVKNKISLYKKVFPPNLEKPTLAIIGLIQPLGAIMPISELQGRWVTQVFK 394

Query:   341 AF-IRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDF 380
                   S+  +K    K  D  D     +++S RH  + D+
Sbjct:   395 GLKTLPSESEMKAEITKAQDKID---KRYVESQRHTIQGDY 432

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0031227 "intrinsic to endoplasmic reticulum membrane" evidence=IEA

RGD|1595097 LOC685351 "similar to flavin containing monooxygenase 5" [Rattus norvegicus (taxid:10116)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 112/359 (31%), Positives = 179/359 (49%)

Query:     3 SDLGGVWNSQ--ASCGR--VYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSY 58
             SD+GG+W  +  +  G   +Y SL   + K  T   DYP+PD+YP Y ++S M++YLR Y
Sbjct:    36 SDIGGLWKYEEISKSGNLGIYKSLTCNTSKEMTAFSDYPIPDHYPNYMHNSKMMEYLRMY 95

Query:    59 AKKFDVYNHSIFNTEVINLEQYEDI-----WEVELSNGKKKK---YDFIAVCNGAQRVAR 110
             A+ F +  H  F T+V ++++  D      W+V +  G+ +K   +D I VC+G      
Sbjct:    96 ARHFGLLKHIQFQTKVCSIKKRPDFSSSGQWDVVVETGETQKTYIFDGIMVCSGHYTEKH 155

Query:   111 YP--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHST 166
             +P  ++ G   F G  LHS +YK P+    KRV+V+G GNSG D+A + S  +++V+ ST
Sbjct:   156 FPLQDFEGISKFQGSCLHSWEYKHPNSFSGKRVVVIGIGNSGADVAGEISRVADQVFLST 215

Query:   167 RRGYHYYPKFID-GKPTPQWMLQLGNKFSSKEETMAYIKQVF--KL-AGFDGVDYGLKKP 222
             RRG   + +  D G P    +    N+   K      I +    KL A F+  ++GL  P
Sbjct:   216 RRGAWVWSRVWDHGNPMDASLFTRYNRAVQKFCPRYLINRQMEKKLNARFNHANFGLL-P 274

Query:   223 DHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRH 282
              H +     + +  +  HI  G +  K ++K        F D T   +D +I+ATGY   
Sbjct:   275 QHRILDHRTVFSDDLPSHIITGKVKIKTNVKTFTSTSAVFEDGTEENIDVVIFATGYKLA 334

Query:   283 FPFIDKEKLEWKLGIPD----LFIHIAPRNLDN--IFFFGFVNAAAGLGDGLRLQGQFI 335
             FPF+  +      GI D    +F ++ P  L+   + F G V  A  +     LQ +++
Sbjct:   335 FPFLSDDS-----GILDSQYSMFKYVFPPELEKPTLAFIGIVQPAGAIIPTSELQSRWV 388

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0031227 "intrinsic to endoplasmic reticulum membrane" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

RGD|1559819 Fmo13 "flavin-containing monooxygenase 13" [Rattus norvegicus (taxid:10116)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 103/303 (33%), Positives = 160/303 (52%)

Query:     3 SDLGGVWNSQASCGR--VYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAK 60
             +D+GG+W  + +  R  +Y SL   + K  T   DYP+PD+YP Y ++S M++YLR YA+
Sbjct:    36 NDIGGLWRYEETTERPGIYKSLTCNTSKEMTAFSDYPIPDHYPNYMHNSKMMEYLRMYAR 95

Query:    61 KFDVYNHSIFNTEVINLEQYEDI-----WEVELS-NGKKKKYDF--IAVCNG--AQRVAR 110
              F +  H  F T V  + +  D      W+V +  +GK+K Y F  + VC+G   ++   
Sbjct:    96 HFGLMKHIQFQTRVCRVRKRPDFSSSGQWDVVVEVDGKQKTYVFDGVMVCSGHSTEKCLP 155

Query:   111 YPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168
               +++G   F G+ LHS +Y+ PD    KRV+V+G GNSG D+A + SH +E+V+ STRR
Sbjct:   156 LQDFAGISKFQGKYLHSWEYRHPDSFVGKRVVVIGIGNSGADVAGEISHVAEQVFLSTRR 215

Query:   169 GYHYYPKFID-GKPTPQWMLQLGNKFSSKEETMAYIKQVF--KL-AGFDGVDYGLKKPDH 224
             G   + +  D G P    +    N+   K      I +    KL A F+  +YGL+   H
Sbjct:   216 GAWIWNRVWDNGNPLDTTLFTRYNRTIQKFYPTFLINRWAENKLNARFNHANYGLQAK-H 274

Query:   225 PLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFP 284
                +   I +  +  HI  G +L K ++K        F D +   VD +++ATGY   FP
Sbjct:   275 RFLSHQSIFSDNLPNHIITGRVLVKPNVKEFTPTSAIFEDGSEEIVDNVVFATGYTFSFP 334

Query:   285 FID 287
             F+D
Sbjct:   335 FLD 337

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0031227 "intrinsic to endoplasmic reticulum membrane" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

MGI|MGI:1310004 Fmo5 "flavin containing monooxygenase 5" [Mus musculus (taxid:10090)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 120/404 (29%), Positives = 198/404 (49%)

Query:     4 DLGGVWNSQASC--GR--VYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYA 59
             D+GG+W  Q +   GR  +Y S+ + + K      DYP+PD+YP Y ++S +L+Y R YA
Sbjct:    37 DIGGLWRFQEAPEEGRASIYQSVVINTSKEMMCFSDYPIPDHYPNYMHNSQVLEYFRMYA 96

Query:    60 KKFDVYNHSIFNTEVINLEQYEDI-----WEVELS-NGKKKK--YDFIAVCNGAQRVARY 111
             K+FD+  +  F T V ++++  D      W+V     GK++   +D + VC G    A  
Sbjct:    97 KEFDLLKYIQFKTTVCSVKKQPDFSTSGQWQVVTECEGKQQVDVFDGVLVCTGHHTDAHL 156

Query:   112 P--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167
             P  ++ G   F G+  HS DYK+P +   KRV+V+G GNSG D+AV+ SH +++V+ STR
Sbjct:   157 PLESFPGIEKFKGKYFHSRDYKNPVEFTGKRVIVIGIGNSGGDLAVEISHTAKQVFLSTR 216

Query:   168 RGY--------HYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGL 219
             RG         H YP  ID   + + M  L        +     KQ+ +   FD   +GL
Sbjct:   217 RGAWILNRVGKHGYP--IDLLLSSRIMYYLSRICGPSLKNNYMEKQMNQR--FDHEMFGL 272

Query:   220 KKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE-VDTIIYATG 278
             K P H   + HP +N  +   I  G +  K ++K        F D +  + +D +I+ATG
Sbjct:   273 K-PKHRALSQHPTVNDDLPNRIIAGLVKVKGNVKEFTETAAVFEDGSREDGIDVVIFATG 331

Query:   279 YNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDN--IFFFGFVNAAAGLGDGLRLQGQFIR 336
             Y+  FPF++      K  +  L+  + P NL+   +   G +     +     LQG++  
Sbjct:   332 YSFAFPFLEDSVKVVKNKV-SLYKKVFPPNLEKPTLAIIGLIQPLGAIMPISELQGRWAT 390

Query:   337 SYIQAFIRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDF 380
                +  ++K     + +        ++ + Y +DS RH  + D+
Sbjct:   391 QVFKG-LKKLPSQSEMMAEINKAREEMAKRY-VDSQRHTIQGDY 432

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0031227 "intrinsic to endoplasmic reticulum membrane" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO

MGI|MGI:1310002 Fmo1 "flavin containing monooxygenase 1" [Mus musculus (taxid:10090)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 109/328 (33%), Positives = 174/328 (53%)

Query:     3 SDLGGVWN--SQASCGR--VYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSY 58
             SDLGG+W        GR  +Y S+   S +  +  PD+P P++YP +  +S+ L+YL+ Y
Sbjct:    35 SDLGGLWRFTEHVEEGRASLYKSVVSNSSREMSCYPDFPFPEDYPNFVPNSLFLEYLKLY 94

Query:    59 AKKFDVYNHSIFNTEVINLEQYEDI-----WEV-ELSNGKKKK--YDFIAVCNGAQRVAR 110
             + +F++     FNT+V ++ +  D      WEV  ++NGK+    +D + VC G      
Sbjct:    95 STQFNLQRCIYFNTKVCSITKRPDFAVSGQWEVVTVTNGKQNSAIFDAVMVCTGFLTNPH 154

Query:   111 YP--NYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHST 166
              P  ++ G   F GE  HS  YK PD  ++KRVLVVG GNSG DIAV+ASH ++KV+ ST
Sbjct:   155 LPLDSFPGILTFKGEYFHSRQYKHPDIFKDKRVLVVGMGNSGTDIAVEASHLAKKVFLST 214

Query:   167 RRGYHYYPKFID-GKPTPQ-WMLQLGNKFSSKEET--MAYIKQVFKLAGFDGVDYGLKKP 222
               G     +  D G P    +M +  N   +   T  ++++      + F+ V+YG+  P
Sbjct:   215 TGGAWVISRVFDSGYPWDMIFMTRFQNMLRNLLPTPIVSWLISKKMNSWFNHVNYGVA-P 273

Query:   223 DHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE-VDTIIYATGYNR 281
             +       P++N ++   I  G +  K  IK +  N V F +    E +D I++ATGY  
Sbjct:   274 EDRTQLREPVLNDELPGRIITGKVFIKPSIKEVKENSVVFNNTPKEEPIDIIVFATGYTF 333

Query:   282 HFPFIDKEKLEWKLGIPDLFIHIAPRNL 309
              FPF+D+  ++ + G   L+ +I P +L
Sbjct:   334 AFPFLDESVVKVEDGQASLYKYIFPAHL 361

GO:0004497 "monooxygenase activity" evidence=ISO

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006082 "organic acid metabolic process" evidence=ISO

GO:0009404 "toxin metabolic process" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0031227 "intrinsic to endoplasmic reticulum membrane" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0070995 "NADPH oxidation" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P16549	FMO1_PIG	1, ., 1, 4, ., 1, 3, ., 8	0.3098	0.9040	0.6729	yes	N/A
Q8HZ70	FMO2_PANTR	1, ., 1, 4, ., 1, 3, ., 8	0.3008	0.8257	0.6112	yes	N/A
Q99518	FMO2_HUMAN	1, ., 1, 4, ., 1, 3, ., 8	0.3008	0.8257	0.6942	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.13	LOW CONFIDENCE prediction!
3rd Layer	1.14.13.8	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	396
pfam00743	532	pfam00743, FMO-like, Flavin-binding monooxygenase-	4e-49
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	5e-30
PLN02172	461	PLN02172, PLN02172, flavin-containing monooxygenas	9e-17
TIGR04046	400	TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido	1e-12
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	7e-09
pfam13434	335	pfam13434, K_oxygenase, L-lysine 6-monooxygenase (	1e-04
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	2e-04
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	3e-04
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	0.002

>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like

 Score =  173 bits (441), Expect = 4e-49
 Identities = 110/408 (26%), Positives = 184/408 (45%), Gaps = 34/408 (8%)

Query: 4   DLGGVW----NSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYA 59
           D+GG+W    + +     +Y S+   S K  +   D+P P++YP + ++S  L+YLR +A
Sbjct: 35  DIGGLWRFTEHVEEGRASIYKSVVTNSSKEMSCFSDFPFPEDYPNFMHNSKFLEYLRMFA 94

Query: 60  KKFDVYNHSIFNTEVINLEQYEDI-----WEV-ELSNGKKKK--YDFIAVCNGAQRVARY 111
           K FD+  +  F T V ++ +  D      WEV     GK++   +D + VC G       
Sbjct: 95  KHFDLLKYIQFKTTVCSVTKRPDFSTSGQWEVVTEHEGKQESAVFDAVMVCTGHHTNPHL 154

Query: 112 PNYS----GYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167
           P  S      F G+  HS DYK P+  + KRVLV+G GNSG DIAV+ S  + +V+ STR
Sbjct: 155 PLESFPGINKFKGQYFHSRDYKHPEGFQGKRVLVIGLGNSGGDIAVELSRTAAQVFLSTR 214

Query: 168 RGYHYYPK-FIDGKPTPQWMLQ-----LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKK 221
            G     +    G P    +       L N   ++       +Q+ K   F+  +YGL  
Sbjct: 215 TGSWVLSRVSDWGYPWDMLLTTRFCSFLRNILPTRISNWLMERQLNKR--FNHENYGL-S 271

Query: 222 PDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE-VDTIIYATGYN 280
           P +   A  PI+N ++   I  G +  K  +K        F D T  E +D +I+ATGY 
Sbjct: 272 PKNGKLAKEPIVNDELPNRILCGAVKVKPSVKEFTETSAIFEDGTVEEDIDVVIFATGYT 331

Query: 281 RHFPFIDKEKLEWKLGIPDLFIHIAPRNLD--NIFFFGFVNAAAGLGDGLRLQGQFIRSY 338
             FPF+++  ++ +     L+ ++ P NL+   +   G +     +   + LQ ++    
Sbjct: 332 FSFPFLEESLVKVETNKISLYKYVFPPNLEKPTLAIIGLIQPLGSIIPTVELQARWAVRV 391

Query: 339 IQAF--IRKSKGYLKFLNAKKNDNPDLGQDYFIDSHRHLWEVDFWKFI 384
            +    +  S   ++ +  KK          F  S     + D+  ++
Sbjct: 392 FKGLCKLPSSSKMMEEITEKKEKKIKR----FGFSQSSTIQTDYIAYM 435

This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score =  119 bits (301), Expect = 5e-30
 Identities = 82/312 (26%), Positives = 125/312 (40%), Gaps = 38/312 (12%)

Query: 1   MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAK 60
              D+GG W         YP L L SPK+    P  P       +   + + DY++ Y +
Sbjct: 40  KRDDVGGTWRYN-----RYPGLRLDSPKWLLGFPFLPFRW-DEAFAPFAEIKDYIKDYLE 93

Query: 61  KFDVYNHSIFNT--EVINLEQYEDIWEVELSNGKKKKY--DFIAVCNGAQRVARYPNYSG 116
           K+ +     FNT  EV + ++    W V  S+G   +   DF+ V  G       P+++G
Sbjct: 94  KYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAG 153

Query: 117 Y--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYP 174
              F G ILHS D+ +P+ +R KRVLV+GAG S  DIA + +     V  S R   H  P
Sbjct: 154 LDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILP 213

Query: 175 KFIDGKPTP-----QWMLQLG-----NKFSSKEETMAY--------IKQVFKLAG----F 212
           K + G+        +  L  G      +        A          K+V  L      F
Sbjct: 214 KPLLGEEVGGRLALRRALPAGWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRF 273

Query: 213 DGVDYGLK---KPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDD-THI 268
             +D G++    PD+       + +  +      GD+    +I +        +D     
Sbjct: 274 LVLDAGVREDLGPDYAPGDGRLVPDGDLFEAGASGDVEVVTEIIDRFTEGGILLDSGREE 333

Query: 269 EVDTIIYATGYN 280
           E D II ATG +
Sbjct: 334 EADVIITATGLD 345

Length = 443

>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX

 Score = 81.4 bits (201), Expect = 9e-17
 Identities = 75/285 (26%), Positives = 120/285 (42%), Gaps = 78/285 (27%)

Query: 18  VYPSLHLISPKFNTQVPDYPM---PDNYPV----YPNHSMMLDYLRSYAKKFDVYNHSIF 70
           VY SL    P+      D+P     D+       YP+H  +L YL+ +A++F +     F
Sbjct: 73  VYESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRF 132

Query: 71  NTEVINLEQYEDIWEVELSNG----KKKKYDFIAVCNG---AQRVARYPNYSGYFSGEIL 123
            TEV+ +E  +  W V+  N     K + +D + VCNG      VA  P    +  G+ +
Sbjct: 133 ETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSW-PGKQI 191

Query: 124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR-RGYHYYPKFIDGKPT 182
           HS +Y+ PD  +N+ V+V+G   SG DI+ D +  +++V+ ++R      Y K     P 
Sbjct: 192 HSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKL----PV 247

Query: 183 PQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIG 242
           PQ  L + ++                                 +D AH            
Sbjct: 248 PQNNLWMHSE---------------------------------IDTAHE----------- 263

Query: 243 HGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFID 287
            G I+ K      NG +V+         DTI++ TGY  HFPF++
Sbjct: 264 DGSIVFK------NGKVVY--------ADTIVHCTGYKYHFPFLE 294

Length = 461

>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 22/178 (12%)

Query: 24  LISPKFNTQVPDYPMPDNYPVYPNHSMM-----LDYLRSYAKKFD--VYNHSIFNTEVIN 76
           L++P +  ++P +P     P       M     + YL  YA+ F+  V       TEV +
Sbjct: 48  LVTPNWQCRLPGHPYDGTDP----DGFMVKDEIVAYLDGYARSFNPPVREG----TEVTS 99

Query: 77  LEQYE-DIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI--LHSMDYKSPDQ 133
           L ++    + V  S G     D + +  G   V   P  +     ++  LHS +Y++PDQ
Sbjct: 100 LRKHGAGGFRVSTSAGAFTA-DQVVIATGGYHVPVIPPLAERLPADVLQLHSSEYRNPDQ 158

Query: 134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH-YYPKFIDGKPTPQWMLQLG 190
           + +  VLVVG+G SGC IA D      KV+ +   G      +F  G+    W+  +G
Sbjct: 159 LPDGAVLVVGSGQSGCQIAEDLHLAGRKVHLAV--GSAPRCARFYRGRDVVDWLDDMG 214

Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 20/174 (11%)

Query: 6   GGVWNSQASCGRVYPSLHLISP-KFNT----------QVPDYPMPDNYPVYPNHSMMLDY 54
           GG W       + YP + L  P  F             +   P  D      + + +  Y
Sbjct: 34  GGHWR------KWYPFVRLHQPSFFYGDFGMPDLNALSIDTSPKWDGKAELASGAEIAAY 87

Query: 55  LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNY 114
           L   A+++ +      +T V  +E+    + V L++G+  + D++    GA  V + P +
Sbjct: 88  LEDLARRYGL--PIRLSTRVTAVERDGGRFVVRLTDGETVRADYVVDATGAFSVPKPPGF 145

Query: 115 SGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168
            G  + E +H +D      ++ K V V+G G++  D A++     + V   TRR
Sbjct: 146 PGADA-EGVHLVDVLERIDLKGKTVAVIGGGHTAIDAALNLLDLGKDVTWITRR 198

Length = 202

>gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring)

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 45/260 (17%), Positives = 90/260 (34%), Gaps = 54/260 (20%)

Query: 53  DYLRSYAKKFDVYNHSIFNTEVINLE--QYEDIWEVELSN-GKKKKYDFIAVCNGAQRVA 109
           DYL+  A + +   +  F  EV  +E      +  V   + G ++ Y    +  G     
Sbjct: 99  DYLQWAASQLE---NVRFGAEVEEVEPDDSGFLLRVHTRDTGTEQTYLARNLVLGTGTTP 155

Query: 110 RYP-NYSGYFSGEILHSMDYKS--PDQIRNKRVLVVGAGNSGCDIAVDA---SHHSEKVY 163
             P          + HS +Y    P  +  KR+ VVG G S  +I +D        +  +
Sbjct: 156 YIPECAKPLPGERVFHSSEYLLRKPRLLAGKRITVVGGGQSAAEIFLDLLRRQPGYQLTW 215

Query: 164 HSTRRGY-----------HYYPKFIDG-----KPTPQWMLQLGNKFSSKEETMAYIKQVF 207
            + R  +           ++ P+++D      +     +L+     + K      I++++
Sbjct: 216 VTRRPNFFPLDDSPFTNEYFSPEYVDYFYALPEEKRDRLLREQKLTNYKGIDPDLIEEIY 275

Query: 208 ------KLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVH 261
                 K+ G       L  P+  + AA    +   L             ++N       
Sbjct: 276 RRLYQQKVLG--DPRVRL-LPNREVQAAEATGDGYQL------------TLRNGEQG--- 317

Query: 262 FVDDTHIEVDTIIYATGYNR 281
             ++  ++ D ++ ATGY  
Sbjct: 318 --EEETLDADAVVLATGYRY 335

This is family of Rossmann fold oxidoreductases that catalyzes the NADPH-dependent hydroxylation of lysine at the N6 position, EC:1.14.13.59. Length = 335

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 34/117 (29%)

Query: 70  FNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA--QRVARYP--NYSGYFSG-EILH 124
           F   +++LE        EL     KKYD + +  G    R    P  +  G +S  E L 
Sbjct: 105 FVERIVSLE--------EL----VKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLF 152

Query: 125 S--------MDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHS-----EKVYHSTRR 168
                    + ++    +  K+V+VVGAG +    AVDA+  +     EKVY + RR
Sbjct: 153 RIRAAKLGYLPWEKVPPVEGKKVVVVGAGLT----AVDAALEAVLLGAEKVYLAYRR 205

Length = 352

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 14/136 (10%)

Query: 40  DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKK 95
           +NYP +P   +   +++ ++  A+KF V    I   EV  +E     ++V+   G  + K
Sbjct: 49  ENYPGFPGGILGPELMEQMKEQAEKFGV---EIVEDEVEKVELEGGPFKVKTDKGTYEAK 105

Query: 96  YDFIAVCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAV 153
              IA   GA   AR     G   F G+ +           + K V+V+G G+S  + A+
Sbjct: 106 AVIIAT--GA--GARKLGVPGEEEFEGKGVSYCATCDGF-FKGKDVVVIGGGDSAVEEAL 160

Query: 154 DASHHSEKVYHSTRRG 169
             S  ++KV    RR 
Sbjct: 161 YLSKIAKKVTLVHRRD 176

Length = 305

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 18/142 (12%)

Query: 30  NTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLE-QYEDIWEVEL 88
              +P   + +        ++ L       K+F V    +  TEV++++   + +   ++
Sbjct: 38  RGCLPKKLLLEVAEGLEL-AIGLALPEEVYKEFGV--EVLLGTEVVDIDRGEKTVVLKDV 94

Query: 89  SNGKKKKYD--FIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRN-----KRVLV 141
             G++  YD   IA   GA+   R P   G    E+         D+I       KRV+V
Sbjct: 95  ETGREITYDKLIIAT--GAR--PRIPGIPGV---EVATLRGVIDSDEILELLELPKRVVV 147

Query: 142 VGAGNSGCDIAVDASHHSEKVY 163
           VG G  G ++A   +   ++V 
Sbjct: 148 VGGGYIGLELAAALAKLGKEVT 169

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	396
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	100.0
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	100.0
KOG1399|consensus	448		100.0
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	100.0
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.95
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.94
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.93
PRK10262	321	thioredoxin reductase; Provisional	99.92
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.91
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.9
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.9
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.9
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.89
KOG0404|consensus	322		99.89
PLN02507	499	glutathione reductase	99.89
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.89
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.89
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.89
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.88
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.88
PRK14727	479	putative mercuric reductase; Provisional	99.88
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.88
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.87
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.87
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.87
PRK14694	468	putative mercuric reductase; Provisional	99.86
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.86
PRK12831	464	putative oxidoreductase; Provisional	99.86
PRK06116	450	glutathione reductase; Validated	99.86
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.86
PRK07846	451	mycothione reductase; Reviewed	99.86
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.86
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.85
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.85
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.85
PRK13748	561	putative mercuric reductase; Provisional	99.85
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.85
TIGR02053	463	MerA mercuric reductase. This model represents the	99.84
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.84
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.84
PRK06370	463	mercuric reductase; Validated	99.84
KOG0405|consensus	478		99.84
PLN02546	558	glutathione reductase	99.83
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.83
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.83
PTZ00052	499	thioredoxin reductase; Provisional	99.82
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.82
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.82
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.82
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.82
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.82
PTZ00058	561	glutathione reductase; Provisional	99.82
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.81
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.81
KOG1336|consensus	478		99.81
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.81
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.8
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.8
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.8
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.8
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.79
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.79
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.79
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.78
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.75
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.75
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.75
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.75
KOG2495|consensus	491		99.74
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.74
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.73
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.72
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.71
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.71
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.68
PRK13984	604	putative oxidoreductase; Provisional	99.65
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.64
PLN02852	491	ferredoxin-NADP+ reductase	99.58
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.54
KOG4716|consensus	503		99.52
KOG1335|consensus	506		99.49
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.46
KOG0399|consensus	2142		99.37
KOG1346|consensus	659		99.28
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.21
PRK09897	534	hypothetical protein; Provisional	99.16
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.04
KOG2755|consensus	334		98.93
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.91
PTZ00188	506	adrenodoxin reductase; Provisional	98.88
KOG1800|consensus	468		98.84
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.61
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.18
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.18
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.03
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.93
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.79
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.77
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.74
COG2081	408	Predicted flavoproteins [General function predicti	97.67
KOG3851|consensus	446		97.61
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.51
COG2081	408	Predicted flavoproteins [General function predicti	97.49
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.48
PRK06116	450	glutathione reductase; Validated	97.43
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.41
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	97.4
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.38
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.35
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.32
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.31
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.31
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	97.3
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.29
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.28
PLN02852	491	ferredoxin-NADP+ reductase	97.27
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.24
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.23
PLN02661	357	Putative thiazole synthesis	97.22
PRK07236	386	hypothetical protein; Provisional	97.21
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.19
PRK06847	375	hypothetical protein; Provisional	97.18
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.17
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.14
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.13
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.08
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.06
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.05
PRK06370	463	mercuric reductase; Validated	97.05
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.05
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.01
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	96.99
TIGR02053	463	MerA mercuric reductase. This model represents the	96.97
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.97
KOG1399|consensus	448		96.96
PRK10262	321	thioredoxin reductase; Provisional	96.96
KOG2755|consensus	334		96.95
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	96.95
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.95
PTZ00188	506	adrenodoxin reductase; Provisional	96.94
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.93
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	96.93
PRK14694	468	putative mercuric reductase; Provisional	96.93
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	96.91
PRK06847	375	hypothetical protein; Provisional	96.9
PLN02546	558	glutathione reductase	96.9
PRK06753	373	hypothetical protein; Provisional	96.89
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.85
PLN02463	447	lycopene beta cyclase	96.84
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	96.84
KOG3851|consensus	446		96.83
PRK12831	464	putative oxidoreductase; Provisional	96.82
PTZ00058	561	glutathione reductase; Provisional	96.78
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	96.78
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.76
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.74
PRK06834	488	hypothetical protein; Provisional	96.72
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.7
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	96.66
TIGR00275	400	flavoprotein, HI0933 family. The model when search	96.66
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	96.62
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	96.61
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	96.61
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.55
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.54
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.53
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	96.52
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	96.5
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.39
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	96.32
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	96.31
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	96.3
PRK05868	372	hypothetical protein; Validated	96.29
KOG2311|consensus	679		96.22
PRK09897	534	hypothetical protein; Provisional	96.21
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	96.2
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.18
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.17
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	96.09
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.08
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	96.08
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.03
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.98
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.97
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	95.97
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.95
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.94
PRK07588	391	hypothetical protein; Provisional	95.89
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.89
COG0579	429	Predicted dehydrogenase [General function predicti	95.88
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	95.88
PTZ00383	497	malate:quinone oxidoreductase; Provisional	95.88
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	95.87
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.85
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	95.83
PLN02697	529	lycopene epsilon cyclase	95.81
PRK07190	487	hypothetical protein; Provisional	95.8
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	95.76
PRK11728	393	hydroxyglutarate oxidase; Provisional	95.76
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	95.75
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	95.73
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	95.67
KOG1336|consensus	478		95.62
KOG2495|consensus	491		95.61
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.52
PLN02463	447	lycopene beta cyclase	95.51
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	95.5
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	95.49
PRK06834	488	hypothetical protein; Provisional	95.47
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	95.46
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.42
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	95.39
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	95.38
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	95.38
PTZ00153	659	lipoamide dehydrogenase; Provisional	95.37
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.36
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	95.36
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	95.35
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	95.33
PRK13984	604	putative oxidoreductase; Provisional	95.3
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	95.3
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	95.29
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	95.29
PRK10157	428	putative oxidoreductase FixC; Provisional	95.28
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	95.28
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.27
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	95.25
PRK07588	391	hypothetical protein; Provisional	95.21
PRK06184	502	hypothetical protein; Provisional	95.14
PRK10157	428	putative oxidoreductase FixC; Provisional	95.12
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	95.11
PLN02507	499	glutathione reductase	95.11
PRK08244	493	hypothetical protein; Provisional	95.08
PRK05257	494	malate:quinone oxidoreductase; Validated	95.04
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	94.98
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.97
PRK07845	466	flavoprotein disulfide reductase; Reviewed	94.97
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	94.91
PRK13339	497	malate:quinone oxidoreductase; Reviewed	94.85
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	94.8
PRK08163	396	salicylate hydroxylase; Provisional	94.75
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	94.75
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	94.74
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	94.73
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.66
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	94.66
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	94.61
KOG2820|consensus	399		94.6
PRK10637	457	cysG siroheme synthase; Provisional	94.57
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	94.56
KOG0399|consensus	2142		94.54
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	94.52
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	94.51
KOG4716|consensus	503		94.51
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.45
PRK11883	451	protoporphyrinogen oxidase; Reviewed	94.45
PRK06753	373	hypothetical protein; Provisional	94.44
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	94.35
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	94.3
PRK09126	392	hypothetical protein; Provisional	94.3
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	94.29
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	94.28
PRK06185	407	hypothetical protein; Provisional	94.25
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	94.21
PRK11445	351	putative oxidoreductase; Provisional	94.04
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	94.02
KOG0404|consensus	322		94.01
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	93.91
PRK14727	479	putative mercuric reductase; Provisional	93.9
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	93.89
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	93.81
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	93.8
PRK08013	400	oxidoreductase; Provisional	93.77
KOG2614|consensus	420		93.77
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	93.77
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	93.77
PRK07846	451	mycothione reductase; Reviewed	93.76
PRK12416	463	protoporphyrinogen oxidase; Provisional	93.7
PRK10015	429	oxidoreductase; Provisional	93.64
PTZ00052	499	thioredoxin reductase; Provisional	93.64
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	93.61
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	93.58
PRK06126	545	hypothetical protein; Provisional	93.57
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	93.54
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	93.52
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	93.51
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	93.5
PLN02568	539	polyamine oxidase	93.46
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	93.43
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	93.43
PRK07233	434	hypothetical protein; Provisional	93.41
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	93.36
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	93.34
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	93.34
PLN02268	435	probable polyamine oxidase	93.33
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	93.2
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	93.18
KOG1346|consensus	659		93.18
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	93.09
PRK13748	561	putative mercuric reductase; Provisional	93.04
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	93.01
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	92.96
KOG0405|consensus	478		92.92
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	92.92
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	92.85
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	92.82
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	92.77
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	92.74
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	92.58
PRK08132	547	FAD-dependent oxidoreductase; Provisional	92.58
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	92.49
PLN02697	529	lycopene epsilon cyclase	92.41
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	92.41
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	92.27
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	92.26
PLN02676	487	polyamine oxidase	92.25
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	92.22
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	92.2
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.16
PRK07045	388	putative monooxygenase; Reviewed	92.13
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.09
PRK11883	451	protoporphyrinogen oxidase; Reviewed	92.08
KOG0029|consensus	501		92.03
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	91.95
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	91.82
PRK05868	372	hypothetical protein; Validated	91.7
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	91.68
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	91.64
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	91.6
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	91.59
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	91.55
PRK07233	434	hypothetical protein; Provisional	91.55
PRK07236	386	hypothetical protein; Provisional	91.54
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	91.52
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	91.45
PRK11728	393	hydroxyglutarate oxidase; Provisional	91.36
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	91.34
PRK08401	466	L-aspartate oxidase; Provisional	91.33
PLN02612	567	phytoene desaturase	91.31
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	91.3
PRK06996	398	hypothetical protein; Provisional	91.27
PRK07538	413	hypothetical protein; Provisional	91.21
KOG1335|consensus	506		91.21
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	91.21
PRK08163	396	salicylate hydroxylase; Provisional	91.2
PRK08274	466	tricarballylate dehydrogenase; Validated	91.17
COG2907	447	Predicted NAD/FAD-binding protein [General functio	91.09
KOG1800|consensus	468		91.08
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	91.06
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	90.9
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	90.89
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	90.89
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	90.89
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	90.73
PRK06475	400	salicylate hydroxylase; Provisional	90.71
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	90.68
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	90.61
PLN02576	496	protoporphyrinogen oxidase	90.6
PRK06475	400	salicylate hydroxylase; Provisional	90.54
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	90.45
PRK04148	134	hypothetical protein; Provisional	90.4
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	90.4
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	90.35
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	90.24
PRK07208	479	hypothetical protein; Provisional	90.22
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	90.21
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	90.19
PLN02464	627	glycerol-3-phosphate dehydrogenase	90.18
PRK09126	392	hypothetical protein; Provisional	90.18
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	90.13
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	90.11
PLN02268	435	probable polyamine oxidase	90.1
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	90.06
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.02
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	90.0
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	89.88
PRK07045	388	putative monooxygenase; Reviewed	89.87
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	89.87
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	89.86
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	89.83
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	89.82
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	89.82
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	89.73
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.72
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	89.68
PRK06184	502	hypothetical protein; Provisional	89.54
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	89.51
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	89.42
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	89.37
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	89.36
COG3349	485	Uncharacterized conserved protein [Function unknow	89.33
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	89.32
KOG2960|consensus	328		89.29
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	89.28
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	89.25
PRK08275	554	putative oxidoreductase; Provisional	89.17
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	89.16
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.11
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.08
PRK08244	493	hypothetical protein; Provisional	89.06
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	88.97
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.96
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	88.93
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	88.91
PRK08013	400	oxidoreductase; Provisional	88.83
PRK06185	407	hypothetical protein; Provisional	88.8
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	88.8
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	88.73
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	88.67
PRK06126	545	hypothetical protein; Provisional	88.65
PRK12416	463	protoporphyrinogen oxidase; Provisional	88.64
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	88.63
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	88.62
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	88.56
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	88.45
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	88.45
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	88.38
PRK06175	433	L-aspartate oxidase; Provisional	88.38
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	88.36
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	88.35
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	88.32
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	88.29
KOG1298|consensus	509		88.19
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	88.18
PRK07804	541	L-aspartate oxidase; Provisional	88.12
PRK12842	574	putative succinate dehydrogenase; Reviewed	88.11
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	88.07
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	87.9
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	87.84
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	87.77
KOG2404|consensus	477		87.71
PLN02328	808	lysine-specific histone demethylase 1 homolog	87.7
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	87.67
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	87.66
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	87.63
PRK07538	413	hypothetical protein; Provisional	87.63
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	87.62
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	87.38
PLN02576	496	protoporphyrinogen oxidase	87.38
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	87.2
PRK10015	429	oxidoreductase; Provisional	87.18
PRK15116	268	sulfur acceptor protein CsdL; Provisional	87.03
PLN02487	569	zeta-carotene desaturase	87.03
PRK11445	351	putative oxidoreductase; Provisional	86.95
PRK07190	487	hypothetical protein; Provisional	86.95
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	86.73
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	86.71
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	86.61
PLN02985	514	squalene monooxygenase	86.54
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	86.54
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	86.5
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	86.47
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	86.47
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	86.4
PRK08132	547	FAD-dependent oxidoreductase; Provisional	86.4
PLN02529	738	lysine-specific histone demethylase 1	86.31
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	86.3
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	86.28
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	86.27
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	86.2
PRK06487	317	glycerate dehydrogenase; Provisional	86.19
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	86.12
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	86.08
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.05
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	85.84
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	85.84
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	85.83
PLN02529	738	lysine-specific histone demethylase 1	85.74
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	85.72
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	85.67
KOG1276|consensus	491		85.66
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	85.58
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	85.57
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	85.48
PTZ00383	497	malate:quinone oxidoreductase; Provisional	85.46
COG0569	225	TrkA K+ transport systems, NAD-binding component [	85.45
PRK08306	296	dipicolinate synthase subunit A; Reviewed	85.45
PLN02328	808	lysine-specific histone demethylase 1 homolog	85.45
PRK13977	576	myosin-cross-reactive antigen; Provisional	85.42
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	85.42
PRK08274	466	tricarballylate dehydrogenase; Validated	85.4
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	85.4
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	85.37
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	85.34
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.33
PRK08294	634	phenol 2-monooxygenase; Provisional	85.27
PRK05257	494	malate:quinone oxidoreductase; Validated	85.16
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	85.12
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	85.08
PLN02976	1713	amine oxidase	85.05
PRK07121	492	hypothetical protein; Validated	85.04
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	85.03
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	85.02
PLN02612	567	phytoene desaturase	84.93
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	84.91
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	84.76
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	84.66
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	84.64
PRK00536	262	speE spermidine synthase; Provisional	84.56

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=100.00  E-value=2.9e-79  Score=602.61  Aligned_cols=384  Identities=34%  Similarity=0.575  Sum_probs=250.4

Q ss_pred             CCCCccccccCCCC----CCCCCCceeeecCCCccccCCCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEE
Q psy2343           1 MESDLGGVWNSQAS----CGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN   76 (396)
Q Consensus         1 ~~~~iGG~W~~~~~----~~~~y~~~~~~~~~~~~~~~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~   76 (396)
                      |+++|||+|+++++    ++++|+++++|+|+++|+|||||+|+++|.||+++++.+||++||++|+|.++|+|||+|++
T Consensus        32 ~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~  111 (531)
T PF00743_consen   32 KSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVS  111 (531)
T ss_dssp             SSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEE
T ss_pred             cCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeE
Confidence            68999999998653    57899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeC-----CeEEEEEcc-Cc--EEEcCEEEEcccCCCCCCCCC--CCC--CcccceeecccCCCCCCCCCCeEEEEcC
Q psy2343          77 LEQYE-----DIWEVELSN-GK--KKKYDFIAVCNGAQRVARYPN--YSG--YFSGEILHSMDYKSPDQIRNKRVLVVGA  144 (396)
Q Consensus        77 v~~~~-----~~~~V~~~~-g~--~~~~d~vvvAtG~~~~p~~P~--~~g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~  144 (396)
                      |++.+     ++|+|++++ |+  +..||+||||||+++.|++|.  +||  .|+|+++||.+|++++.|+||||+|||+
T Consensus       112 v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~  191 (531)
T PF00743_consen  112 VERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGG  191 (531)
T ss_dssp             EEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESS
T ss_pred             eeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeC
Confidence            99862     589999865 33  367999999999999999995  999  8999999999999999999999999999


Q ss_pred             CCcHHHHHHHHhcCCCcEEEEeccCceeecCCC-CCCChhHHHHh---------hCccccChHHHHHHHHHHHHHhcCCC
Q psy2343         145 GNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFI-DGKPTPQWMLQ---------LGNKFSSKEETMAYIKQVFKLAGFDG  214 (396)
Q Consensus       145 G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~-~~~~~~~~~~~---------~p~~~~~~~~~~~~~~~~~~~~~~~~  214 (396)
                      |+||+|||.+|++.|++|++++|++.|++|+.. .|.|.|.....         +|..+.+     ++.++.+.. ..+.
T Consensus       192 g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~-----~~~~~~l~~-~~~~  265 (531)
T PF00743_consen  192 GNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSN-----WLLEKKLNK-RFDH  265 (531)
T ss_dssp             SHHHHHHHHHHTTTSCCEEEECC---------------------------------------------------------
T ss_pred             CHhHHHHHHHHHHhcCCeEEEEecccccccccccccccccccccccccccccccccccccc-----ccccccccc-cccc
Confidence            999999999999999999999999999999986 58898876432         3433333     333333322 2345


Q ss_pred             CCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEeCCeEEecCCcEe-cCcEEEEccCCCCCCCCCCcccccc
Q psy2343         215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHI-EVDTIIYATGYNRHFPFIDKEKLEW  293 (396)
Q Consensus       215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~~~v~~~dG~~~-~~D~VI~aTG~~~~~~~l~~~~~~~  293 (396)
                      +.+|+ .|.+....+++++++++...+.+|+|++++.|+++++++|+|.||+++ ++|+||+||||+.++|||+++.+..
T Consensus       266 ~~~gl-~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~  344 (531)
T PF00743_consen  266 ENYGL-KPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKV  344 (531)
T ss_dssp             ----------------------------------EE-EEEE-SSEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S
T ss_pred             ccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            67777 788888888999999999999999999999999999999999999984 7999999999999999999887777


Q ss_pred             cCCccccccccccCC--CCcEEEEecccCcCchhhHHHHHHHHHHHHHhccccCCCchhhHHHHhhcCCC--ccCCCccc
Q psy2343         294 KLGIPDLFIHIAPRN--LDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNP--DLGQDYFI  369 (396)
Q Consensus       294 ~~~~~~l~~~~~~~~--~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~lp~~~~~~~~m~~~~~~--~~~~~~~~  369 (396)
                      .++.+.||+++|+++  .|+|+|||.+++.++.++.+|+||||+|++++|+.+||+.    ++|.+++++  ++...+|.
T Consensus       345 ~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw~a~v~sG~~~LPs~----~~M~~~i~~~~~~~~~~~~  420 (531)
T PF00743_consen  345 DDNRVRLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARWAARVFSGRVKLPSK----EEMMEEIEEEQEWRAKRFG  420 (531)
T ss_dssp             -SSSSSEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHHHHHHHTTSS----H----HHHHHHHHHHHHHHHT--S
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccc
Confidence            777889999999986  4899999999988889999999999999999999999997    899888654  23333566


Q ss_pred             cCCCceeeeeHHHHHHHHHHhccccc
Q psy2343         370 DSHRHLWEVDFWKFIKCARMYRDMLD  395 (396)
Q Consensus       370 ~~~~~~~~~~~~~y~~~l~~~~g~~~  395 (396)
                      .+++|.+++||..|+|+||+++|++|
T Consensus       421 ~~~~~~~~~d~~~y~deLA~~iG~~P  446 (531)
T PF00743_consen  421 FSPRHTIQVDYIDYMDELAREIGCKP  446 (531)
T ss_dssp             HHHHHHHHHHHHHHHHTTS-------
T ss_pred             cccccccccccccccccccccccccc
Confidence            66788889999999999999999987

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=100.00  E-value=1.3e-59  Score=457.91  Aligned_cols=327  Identities=22%  Similarity=0.381  Sum_probs=269.6

Q ss_pred             CCCCccccccCCCC---------------CCCCCCceeeecCCCccccCCCCCCCC-------CCCCCChHHHHHHHHHH
Q psy2343           1 MESDLGGVWNSQAS---------------CGRVYPSLHLISPKFNTQVPDYPMPDN-------YPVYPNHSMMLDYLRSY   58 (396)
Q Consensus         1 ~~~~iGG~W~~~~~---------------~~~~y~~~~~~~~~~~~~~~~~p~p~~-------~~~~p~~~~~~~Yl~~~   58 (396)
                      |++++||+|++++.               +|++|++|++|+|+++|+|+|||++..       .+.||++.++.+||++|
T Consensus        41 ~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~  120 (461)
T PLN02172         41 REKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDF  120 (461)
T ss_pred             cCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHH
Confidence            57899999998643               388999999999999999999999753       36799999999999999


Q ss_pred             HHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC--c--EEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCCC
Q psy2343          59 AKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--K--KKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPD  132 (396)
Q Consensus        59 ~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g--~--~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~~  132 (396)
                      +++|++.++|+|+++|++|++.+++|+|++.++  .  +..||+||||||+++.|++|.+||  .|.|.++|++.|+.++
T Consensus       121 a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~  200 (461)
T PLN02172        121 AREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPD  200 (461)
T ss_pred             HHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCcc
Confidence            999999999999999999999888999998643  2  367999999999999999999999  8999999999999999


Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGF  212 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  212 (396)
                      .++||+|+|||+|+||+|+|.+|+..+++|++++|++....                   ..                  
T Consensus       201 ~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~-------------------~~------------------  243 (461)
T PLN02172        201 PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDT-------------------YE------------------  243 (461)
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccc-------------------cc------------------
Confidence            99999999999999999999999999999999999752100                   00                  


Q ss_pred             CCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEe-CCeEEecCCcEecCcEEEEccCCCCCCCCCCccc-
Q psy2343         213 DGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN-GNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEK-  290 (396)
Q Consensus       213 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~-~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~~-  290 (396)
                           .++.|                    ..++.+.+.|..+. +++|+|+||+.+++|.||+||||++++|||+... 
T Consensus       244 -----~~~~~--------------------~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~  298 (461)
T PLN02172        244 -----KLPVP--------------------QNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGY  298 (461)
T ss_pred             -----cCcCC--------------------CCceEECCcccceecCCeEEECCCCCccCCEEEECCcCCccccccCcccc
Confidence                 00001                    01233344455443 4569999999999999999999999999998643 


Q ss_pred             ccccCCcc-ccccccccCCC-CcEEEEecccCcCchhhHHHHHHHHHHHHHhccccCCCchhhHHHHhhcCCC--ccCCC
Q psy2343         291 LEWKLGIP-DLFIHIAPRNL-DNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNP--DLGQD  366 (396)
Q Consensus       291 ~~~~~~~~-~l~~~~~~~~~-p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~lp~~~~~~~~m~~~~~~--~~~~~  366 (396)
                      +..+++.+ +||+++|++.. |+|+|+|.+. .+..++.+|+||+|+|++|+|+.+||+.    ++|+++++.  +... 
T Consensus       299 i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~-~~~~f~~~E~Qa~~~a~v~sG~~~LPs~----~~m~~~~~~~~~~~~-  372 (461)
T PLN02172        299 MRIDENRVEPLYKHVFPPALAPGLSFIGLPA-MGIQFVMFEIQSKWVAAVLSGRVTLPSE----DKMMEDINAWYASLE-  372 (461)
T ss_pred             eeeCCCcchhhHHhhcCCCCCCcEEEEeccc-cccCchhHHHHHHHHHHHHcCCCCCcCH----HHHHHHHHHHHHHHH-
Confidence            44555655 79999999975 9999999984 4678999999999999999999999997    999988654  1111 


Q ss_pred             ccccCCCceeee--eHHHHHHHHHHhccccc
Q psy2343         367 YFIDSHRHLWEV--DFWKFIKCARMYRDMLD  395 (396)
Q Consensus       367 ~~~~~~~~~~~~--~~~~y~~~l~~~~g~~~  395 (396)
                      .+...+||...+  .+..|+|+||+++|+.+
T Consensus       373 ~~g~~~r~~h~~~~~~~~y~~~la~~~g~~~  403 (461)
T PLN02172        373 ALGIPKRYTHKLGKIQSEYLNWIAEECGCPL  403 (461)
T ss_pred             hcCCCCceeEEcCccHHHHHHHHHHHhCCCC
Confidence            122345554443  48999999999999875

>KOG1399|consensus

Probab=100.00  E-value=9e-52  Score=395.19  Aligned_cols=325  Identities=28%  Similarity=0.469  Sum_probs=264.8

Q ss_pred             CCCCccccccCCCC----CCCCCCceeeecCCCccccCCCCCCCCCCCC-CChHHHHHHHHHHHHHcCCCCceEeCcEEE
Q psy2343           1 MESDLGGVWNSQAS----CGRVYPSLHLISPKFNTQVPDYPMPDNYPVY-PNHSMMLDYLRSYAKKFDVYNHSIFNTEVI   75 (396)
Q Consensus         1 ~~~~iGG~W~~~~~----~~~~y~~~~~~~~~~~~~~~~~p~p~~~~~~-p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~   75 (396)
                      |+++|||+|.+.+.    +|++|++|++|+|+++|+|+|||+|++.|.| |++.++.+||++||++|+|.++|+|+++|.
T Consensus        37 r~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~  116 (448)
T KOG1399|consen   37 RTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVV  116 (448)
T ss_pred             ecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEE
Confidence            68899999999865    6799999999999999999999999998875 999999999999999999999999999999


Q ss_pred             EEEEeC-CeEEEEEccC----cEEEcCEEEEcccCCCCCCCCCCCC----CcccceeecccCCCCCCCCCCeEEEEcCCC
Q psy2343          76 NLEQYE-DIWEVELSNG----KKKKYDFIAVCNGAQRVARYPNYSG----YFSGEILHSMDYKSPDQIRNKRVLVVGAGN  146 (396)
Q Consensus        76 ~v~~~~-~~~~V~~~~g----~~~~~d~vvvAtG~~~~p~~P~~~g----~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~  146 (396)
                      +|+..+ ++|.|.+.++    +...||+||||||++..|++|.++|    .|+|+++||++|+.++.|++|+|+|||+|+
T Consensus       117 ~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~  196 (448)
T KOG1399|consen  117 RVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGN  196 (448)
T ss_pred             EEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCc
Confidence            999987 7999999764    3578999999999996699999988    899999999999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCcEEEEeccC-ceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy2343         147 SGCDIAVDASHHSEKVYHSTRRG-YHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHP  225 (396)
Q Consensus       147 sa~d~a~~l~~~~~~V~l~~r~~-~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  225 (396)
                      ||+|++.+++..+++|+++.+++ ....|                                                   
T Consensus       197 SG~DIs~d~~~~ak~v~~~~~~~~~~~~~---------------------------------------------------  225 (448)
T KOG1399|consen  197 SGMDISLDLLRVAKEVHLSVVSPKVHVEP---------------------------------------------------  225 (448)
T ss_pred             cHHHHHHHHHHhccCcceeeecccccccc---------------------------------------------------
Confidence            99999999999999999997620 00000                                                   


Q ss_pred             CCcccCccCchhhhcccCCCeEecCCcceEeCCeEEec-CCcEecCcEEEEccCCCCCCCCCCcccc--cccCCcccccc
Q psy2343         226 LDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFV-DDTHIEVDTIIYATGYNRHFPFIDKEKL--EWKLGIPDLFI  302 (396)
Q Consensus       226 ~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~~~v~~~-dG~~~~~D~VI~aTG~~~~~~~l~~~~~--~~~~~~~~l~~  302 (396)
                                  ...+.. ++...+.|..+++++..|. +|....+|.||+||||...+|||+....  ..++..-++|+
T Consensus       226 ------------~~~~~~-~~~~~~~i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~~~~~~~~~~~pl~k  292 (448)
T KOG1399|consen  226 ------------PEILGE-NLWQVPSIKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFLETLGLGTVRDNIVGPLYK  292 (448)
T ss_pred             ------------cceeec-ceEEccccccccCcceEEEcCceeEEeeeEEEeeeeEeecceeccCCceeeccCcccchhe
Confidence                        000111 3333344888888885555 5556889999999999999999997653  23444468999


Q ss_pred             ccccCC-CCcEEEEecccCcCchhhHHHHHHHHHHHHHhccccCCCchhhHHHHhhcCCC--ccCCCccccCCCceeeee
Q psy2343         303 HIAPRN-LDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNP--DLGQDYFIDSHRHLWEVD  379 (396)
Q Consensus       303 ~~~~~~-~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~lp~~~~~~~~m~~~~~~--~~~~~~~~~~~~~~~~~~  379 (396)
                      +++++. .|++.++|...-. ..++..|.|+||+++++.|..++|+.    ++|..+.+.  ......+..+.||+.+.+
T Consensus       293 ~~~p~~~~~~~~~~~l~~~~-~~f~~~e~Q~r~~~~v~~G~~~lps~----~~m~~d~~~~~~~~~~~~~~~~~~t~~~~  367 (448)
T KOG1399|consen  293 KVFPPALAPGLSLAGLPLIQ-IPFPMFELQARWVAAVLEGRLKLPSK----DQMLEDGQEKYEKLDAVGLATGRHTHVPD  367 (448)
T ss_pred             eccchhhCccccccccCeee-EeecceehhhhhhHhhhcCCCcCCCH----HHhhhhhhhhhhhhhhhcccccccccccc
Confidence            998876 4677777765422 67889999999999999999999997    888887654  223335667788887764


Q ss_pred             ---HHHHHHHHHHhcccc
Q psy2343         380 ---FWKFIKCARMYRDML  394 (396)
Q Consensus       380 ---~~~y~~~l~~~~g~~  394 (396)
                         ...|...++...|+.
T Consensus       368 ~~~l~~y~~~~~~~~g~~  385 (448)
T KOG1399|consen  368 YDELAEYINWFADLCGFP  385 (448)
T ss_pred             hHHHHHHhhhhhhhcCCC
Confidence               466777677666653

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.8e-38  Score=306.00  Aligned_cols=341  Identities=24%  Similarity=0.344  Sum_probs=257.8

Q ss_pred             CCCCccccccCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe
Q psy2343           1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY   80 (396)
Q Consensus         1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~   80 (396)
                      |++++||+|+++     +|++++++++++.++|+++|++ +.+.|+...++.+|+..|++++++..+|+|+++|..++.+
T Consensus        40 k~~~~Gg~W~~~-----ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~  113 (443)
T COG2072          40 KRDDVGGTWRYN-----RYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWD  113 (443)
T ss_pred             ccCCcCCcchhc-----cCCceEECCchheeccCCCccC-CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEec
Confidence            678999999998     7999999999999999999998 6667888888999999999999999999999999999887


Q ss_pred             --CCeEEEEEccCcE--EEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHH
Q psy2343          81 --EDIWEVELSNGKK--KKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVD  154 (396)
Q Consensus        81 --~~~~~V~~~~g~~--~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~  154 (396)
                        ++.|+|+++++.+  +++|.||+|||+++.|++|.|+|  .|.|.++||++|++.++++||+|+|||+|+||+|+|.+
T Consensus       114 ~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~  193 (443)
T COG2072         114 EDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPE  193 (443)
T ss_pred             CCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHH
Confidence              5699999998765  45999999999999999999999  99999999999999999999999999999999999999


Q ss_pred             HhcCCCcEEEEeccCceeecCCCCCCChhHHHH--h-hCccccCh----------------------HHHHHHHHHHHHH
Q psy2343         155 ASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWML--Q-LGNKFSSK----------------------EETMAYIKQVFKL  209 (396)
Q Consensus       155 l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~--~-~p~~~~~~----------------------~~~~~~~~~~~~~  209 (396)
                      |++.+++||++.|++.+.+|+...+.+......  . +|......                      .......+..++.
T Consensus       194 l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (443)
T COG2072         194 LAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRRALPAGWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRF  273 (443)
T ss_pred             HHhcCCeeEEEecCCCceecccccccchHHHHHHhhhCccceehhhhhhhhhhhhhhcccccCCCchHHHHHhhhhhhhc
Confidence            999999999999999999998876655443221  1 22221110                      0000111111111


Q ss_pred             hcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecC-CcceEeCCeEEecCCcEecCcEEEEccCCCC-CCCCCC
Q psy2343         210 AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD-DIKNLNGNIVHFVDDTHIEVDTIIYATGYNR-HFPFID  287 (396)
Q Consensus       210 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~-~~~~l~  287 (396)
                      ...+........|.....+++..+...+...+..+++.+.+ .+..+....+...+|..++.|.++.+||+.. .+..+.
T Consensus       274 ~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~  353 (443)
T COG2072         274 LVLDAGVREDLGPDYAPGDGRLVPDGDLFEAGASGDVEVVTEIIDRFTEGGILLDSGREEEADVIITATGLDANDLSGAA  353 (443)
T ss_pred             cccccChHhhcCCCCCccccccccccchhhhhhhcccceeeccccccCCcceecCCCccccceEEEecCCCchhheeeec
Confidence            11111111122355566666677777888888888888765 4566666777777777799999999999987 454444


Q ss_pred             cccc--cccCCccccccccccCCCCcEEEEecccCcC---chhhHHHHHHHHHHHHHhccccCCC
Q psy2343         288 KEKL--EWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA---GLGDGLRLQGQFIRSYIQAFIRKSK  347 (396)
Q Consensus       288 ~~~~--~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~---~~~~~ae~qa~~~a~~l~~~~~lp~  347 (396)
                      ....  .++......|+...-.+.||++.++......   ......+.+.++++..+........
T Consensus       354 ~~~~~~~~~~~~~~~~~g~~~~~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (443)
T COG2072         354 GGYGGDPWDKDAPLAYKGLALSGGPNLFLIGGPTKASGGLKAALRAELRITLLADAIAHGRTLGL  418 (443)
T ss_pred             cccccccccccccceeccccccCCCceEEecCccCCcccchhHHhhhhhhhHHHHHHHhcccccc
Confidence            3221  2333445667788888899999999876532   2333557777777776665555444

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.95  E-value=4e-28  Score=213.40  Aligned_cols=162  Identities=33%  Similarity=0.553  Sum_probs=120.6

Q ss_pred             CCCCccccccCCCCCCCCCCceeeecCCCc---cccCCCCCCC--------CCCCCCChHHHHHHHHHHHHHcCCCCceE
Q psy2343           1 MESDLGGVWNSQASCGRVYPSLHLISPKFN---TQVPDYPMPD--------NYPVYPNHSMMLDYLRSYAKKFDVYNHSI   69 (396)
Q Consensus         1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~---~~~~~~p~p~--------~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~   69 (396)
                      |++.+||.|...      |+...+.++...   +.+++++...        ....+|+++++.+||+++++++++.  ++
T Consensus        29 ~~~~~Gg~w~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~--i~  100 (203)
T PF13738_consen   29 RNDRPGGVWRRY------YSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLE--IR  100 (203)
T ss_dssp             SSSSSTTHHHCH-------TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGG--EE
T ss_pred             CCCCCCCeeEEe------CCCCccccCccccccccCCcccccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcc--cc
Confidence            567899999865      444444444432   2233332211        1246789999999999999999997  99


Q ss_pred             eCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcH
Q psy2343          70 FNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSG  148 (396)
Q Consensus        70 ~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa  148 (396)
                      ++++|++|++++++|.|++++++++.||+||+|||.++.|++|.++| .+. ..+|+.++.+...++||+|+|||+|+||
T Consensus       101 ~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~-~~~h~~~~~~~~~~~~k~V~VVG~G~SA  179 (203)
T PF13738_consen  101 FNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFR-PIIHSADWRDPEDFKGKRVVVVGGGNSA  179 (203)
T ss_dssp             TS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCS-EEEEGGG-STTGGCTTSEEEEE--SHHH
T ss_pred             cCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccccccc-ceEehhhcCChhhcCCCcEEEEcChHHH
Confidence            99999999999888999999997789999999999999999999999 655 8899999999999999999999999999


Q ss_pred             HHHHHHHhcCCCcEEEEeccCce
Q psy2343         149 CDIAVDASHHSEKVYHSTRRGYH  171 (396)
Q Consensus       149 ~d~a~~l~~~~~~V~l~~r~~~~  171 (396)
                      +|+|..|++.+++|++++|++.|
T Consensus       180 ~d~a~~l~~~g~~V~~~~R~~~~  202 (203)
T PF13738_consen  180 VDIAYALAKAGKSVTLVTRSPIW  202 (203)
T ss_dssp             HHHHHHHTTTCSEEEEEESS---
T ss_pred             HHHHHHHHhhCCEEEEEecCCCC
Confidence            99999999999999999999866

...

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.94  E-value=2.3e-25  Score=207.79  Aligned_cols=229  Identities=20%  Similarity=0.216  Sum_probs=172.8

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccccee
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEIL  123 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~  123 (396)
                      .++.++..|++++++++++.  +++ ++|++|+++++.|.|++.++.++.||+||+|||.  .|+.|.+||  .+.+..+
T Consensus        54 ~~~~~~~~~l~~~~~~~gv~--~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~--~~~~~~i~g~~~~~~~~~  128 (300)
T TIGR01292        54 ISGPELMEKMKEQAVKFGAE--IIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGA--SARKLGIPGEDEFLGRGV  128 (300)
T ss_pred             CChHHHHHHHHHHHHHcCCe--EEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCC--CcccCCCCChhhcCCccE
Confidence            35679999999999999987  777 8999999988889999888888999999999999  788888998  5666666


Q ss_pred             ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343         124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI  203 (396)
Q Consensus       124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  203 (396)
                      |.+.+.+...+++++|+|||+|.+|+|+|..|++.+++|+++.|++.+..      .+                   .+.
T Consensus       129 ~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~------~~-------------------~~~  183 (300)
T TIGR01292       129 SYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA------EK-------------------ILL  183 (300)
T ss_pred             EEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc------CH-------------------HHH
Confidence            66656555567899999999999999999999999999999999763210      00                   111


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccC-CCeEe--cCCcceEeCC----eEEec---CC--cEecCc
Q psy2343         204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH-GDILP--KDDIKNLNGN----IVHFV---DD--THIEVD  271 (396)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-g~i~~--~~~i~~i~~~----~v~~~---dG--~~~~~D  271 (396)
                      +.                                   +.. ..|++  ...+.+++++    .+++.   +|  .++++|
T Consensus       184 ~~-----------------------------------l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D  228 (300)
T TIGR01292       184 DR-----------------------------------LRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVD  228 (300)
T ss_pred             HH-----------------------------------HHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEcc
Confidence            11                                   111 13332  2345555543    24443   24  458999


Q ss_pred             EEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccC-cCchhhHHHHHHHHHHHHHhc
Q psy2343         272 TIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIRSYIQA  341 (396)
Q Consensus       272 ~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~-~~~~~~~ae~qa~~~a~~l~~  341 (396)
                      .||+|||++++.+++... +..+ ++.+.+++. +.+++|+||++||+.. ....+..|..||+.+|..+..
T Consensus       229 ~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~  298 (300)
T TIGR01292       229 GVFIAIGHEPNTELLKGL-LELDEGGYIVTDEG-MRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAER  298 (300)
T ss_pred             EEEEeeCCCCChHHHHHh-heecCCCcEEECCC-CccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHh
Confidence            999999999998888765 4443 355666655 5789999999999986 345677899999999988764

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.3e-24  Score=199.83  Aligned_cols=233  Identities=20%  Similarity=0.207  Sum_probs=176.4

Q ss_pred             CCCCCCCC---ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCC
Q psy2343          39 PDNYPVYP---NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYS  115 (396)
Q Consensus        39 p~~~~~~p---~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~  115 (396)
                      -+++|.|+   ++.++.+-++..+++++..  +.. .+|.+++..++.|+|++++++ +++++||||||.  .++.|.+|
T Consensus        48 venypg~~~~~~g~~L~~~~~~~a~~~~~~--~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~--~~~~~~~~  121 (305)
T COG0492          48 VENYPGFPGGILGPELMEQMKEQAEKFGVE--IVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGA--GARKLGVP  121 (305)
T ss_pred             ecCCCCCccCCchHHHHHHHHHHHhhcCeE--EEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCC--cccCCCCC
Confidence            45666666   4789999999999999976  444 688888875448999999988 999999999999  78888888


Q ss_pred             C--CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccc
Q psy2343         116 G--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF  193 (396)
Q Consensus       116 g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~  193 (396)
                      |  .|.|+.+|.|..|+. .++||+|+|||+|+||+|-|..|++.+++||+++|++.+..        .+          
T Consensus       122 ~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra--------~~----------  182 (305)
T COG0492         122 GEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA--------EE----------  182 (305)
T ss_pred             cchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc--------CH----------
Confidence            8  799999999999999 99999999999999999999999999999999999974211        00          


Q ss_pred             cChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeC---CeEEecCC--c
Q psy2343         194 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG---NIVHFVDD--T  266 (396)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~---~~v~~~dG--~  266 (396)
                             .+.+++.                                  ...+|.  ....|.++.+   .+|.+.+.  +
T Consensus       183 -------~~~~~l~----------------------------------~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~  221 (305)
T COG0492         183 -------ILVERLK----------------------------------KNVKIEVLTNTVVKEILGDDVEGVVLKNVKGE  221 (305)
T ss_pred             -------HHHHHHH----------------------------------hcCCeEEEeCCceeEEecCccceEEEEecCCc
Confidence                   1111111                                  011344  3456888877   47888774  3


Q ss_pred             --EecCcEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcCc-hhhHHHHHHHHHHHH
Q psy2343         267 --HIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG-LGDGLRLQGQFIRSY  338 (396)
Q Consensus       267 --~~~~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~-~~~~ae~qa~~~a~~  338 (396)
                        .+.+|.|+.++|+.|+..|+.......+++.+.+... +.|++|+||++||++.... ++..+-.++-.+|..
T Consensus       222 ~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~-~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~  295 (305)
T COG0492         222 EKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEE-METSVPGIFAAGDVADKNGRQIATAAGDGAIAALS  295 (305)
T ss_pred             eEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCC-cccCCCCEEEeEeeccCcccEEeehhhhHHHHHHH
Confidence              4789999999999999988876555223455555444 7999999999999986532 344444444444443

>PRK10262 thioredoxin reductase; Provisional

Probab=99.92  E-value=4.7e-24  Score=200.88  Aligned_cols=235  Identities=17%  Similarity=0.240  Sum_probs=171.5

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccce
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEI  122 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~  122 (396)
                      ..+.+++.+|+.++++.++..  ++++ +|+.|+..++.|+++.+++ .+.||+||+|||.  .|+.|++||  .|.++.
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~--~~~~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~--~~~~~~i~g~~~~~~~~  132 (321)
T PRK10262         59 DLTGPLLMERMHEHATKFETE--IIFD-HINKVDLQNRPFRLTGDSG-EYTCDALIIATGA--SARYLGLPSEEAFKGRG  132 (321)
T ss_pred             CCCHHHHHHHHHHHHHHCCCE--EEee-EEEEEEecCCeEEEEecCC-EEEECEEEECCCC--CCCCCCCCCHHHcCCCc
Confidence            456789999999999999875  6665 6788888788899887544 5899999999999  788999999  577888


Q ss_pred             eecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHH
Q psy2343         123 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY  202 (396)
Q Consensus       123 ~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~  202 (396)
                      +|++.+.+.....+|+|+|||+|.+|+|+|..|++.+++|+++.|++.+  +..    +                   .+
T Consensus       133 v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~--~~~----~-------------------~~  187 (321)
T PRK10262        133 VSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF--RAE----K-------------------IL  187 (321)
T ss_pred             EEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc--CCC----H-------------------HH
Confidence            8888888777788999999999999999999999999999999997632  000    0                   01


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCC-----eEEecCC------cEec
Q psy2343         203 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGN-----IVHFVDD------THIE  269 (396)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~-----~v~~~dG------~~~~  269 (396)
                                                     ...+.+.++...|++.  ..+.+++++     .|++.++      ++++
T Consensus       188 -------------------------------~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~  236 (321)
T PRK10262        188 -------------------------------IKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLD  236 (321)
T ss_pred             -------------------------------HHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEE
Confidence                                           1112233344455543  356777654     3666543      3589


Q ss_pred             CcEEEEccCCCCCCCCCCcccccccCCccccccc----cccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhcc
Q psy2343         270 VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIH----IAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       270 ~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~----~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      +|.||+|+|++|+..++.. .+..+++.+.+..+    .+.++.|+||++||+... ......|..+|+.+|..+...
T Consensus       237 ~D~vv~a~G~~p~~~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~  313 (321)
T PRK10262        237 VAGLFVAIGHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERY  313 (321)
T ss_pred             CCEEEEEeCCccChhHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHH
Confidence            9999999999999887664 34444455555432    357899999999999753 233444556666666555444

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.91  E-value=2.7e-23  Score=207.36  Aligned_cols=236  Identities=17%  Similarity=0.166  Sum_probs=178.4

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccce
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEI  122 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~  122 (396)
                      +.++.++.++++.+++++++.  ++++++|++|++.++.|.|++.++.++.||.||+|||.  .|+.|.+||  .|.+..
T Consensus       262 ~~~~~~l~~~l~~~~~~~gv~--i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~--~~r~~~ipG~~~~~~~~  337 (517)
T PRK15317        262 ETEGPKLAAALEEHVKEYDVD--IMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGA--RWRNMNVPGEDEYRNKG  337 (517)
T ss_pred             CCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCC--CcCCCCCCCHHHhcCce
Confidence            356789999999999999987  88899999999877889999988888999999999999  788889999  677877


Q ss_pred             eecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHH
Q psy2343         123 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY  202 (396)
Q Consensus       123 ~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~  202 (396)
                      +|++..++...++||+|+|||+|++|+|+|..|+..+++|+++.|.+....                     .     ..
T Consensus       338 v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---------------------~-----~~  391 (517)
T PRK15317        338 VAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---------------------D-----QV  391 (517)
T ss_pred             EEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---------------------c-----HH
Confidence            887766666667899999999999999999999999999999998763210                     0     11


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhccc-CCCeEe--cCCcceEeCC-----eEEecC---Cc--Eec
Q psy2343         203 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIG-HGDILP--KDDIKNLNGN-----IVHFVD---DT--HIE  269 (396)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~-~g~i~~--~~~i~~i~~~-----~v~~~d---G~--~~~  269 (396)
                      ...                                  .+. ..+|++  ...++++.++     .|.+.+   |+  .++
T Consensus       392 l~~----------------------------------~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~  437 (517)
T PRK15317        392 LQD----------------------------------KLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLE  437 (517)
T ss_pred             HHH----------------------------------HHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEE
Confidence            110                                  111 113333  3345555543     255543   43  489


Q ss_pred             CcEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCcC-chhhHHHHHHHHHHHHHhccccCC
Q psy2343         270 VDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAFIRKS  346 (396)
Q Consensus       270 ~D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~-~~~~~ae~qa~~~a~~l~~~~~lp  346 (396)
                      +|.|++|+|++|+..+++.. +..+ ++.+.+.+.+ .++.|+||++||+.... ..+..|..+|..+|..+...+..+
T Consensus       438 ~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l-~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~~~  514 (517)
T PRK15317        438 LEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARG-ATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLIRN  514 (517)
T ss_pred             cCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCC-CCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHhhc
Confidence            99999999999999988755 4443 3556555544 68999999999997643 446678888888887776555433

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.90  E-value=4.2e-23  Score=201.94  Aligned_cols=237  Identities=18%  Similarity=0.237  Sum_probs=163.3

Q ss_pred             hHHHHHH-HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc-CcEEE--cCEEEEcccCCCCCCCCCCCCCccccee
Q psy2343          48 HSMMLDY-LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-GKKKK--YDFIAVCNGAQRVARYPNYSGYFSGEIL  123 (396)
Q Consensus        48 ~~~~~~Y-l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~-g~~~~--~d~vvvAtG~~~~p~~P~~~g~~~g~~~  123 (396)
                      .+++..| .+++++++++.  ++++++|++|+++++.+.+.... ++++.  ||+||||||+  .|+.|.+||.-...++
T Consensus        42 ~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~--~p~~~~i~G~~~~~v~  117 (427)
T TIGR03385        42 RNKLLAYTPEVFIKKRGID--VKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGA--SPIVPNIEGINLDIVF  117 (427)
T ss_pred             HHHcccCCHHHHHHhcCCe--EEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCC--CCCCCCCCCcCCCCEE
Confidence            3455555 35566888886  78899999999877766665432 44567  9999999999  8999999882112233


Q ss_pred             ecccCCCCC-------CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccCh
Q psy2343         124 HSMDYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK  196 (396)
Q Consensus       124 hs~~~~~~~-------~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~  196 (396)
                      +.....+..       ...+++|+|||+|.+|+|+|..|++.+.+|+++.+.+....+..    +         .     
T Consensus       118 ~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~----~---------~-----  179 (427)
T TIGR03385       118 TLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLF----D---------E-----  179 (427)
T ss_pred             EECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcccc----C---------H-----
Confidence            332221111       24578999999999999999999999999999998763211110    0         0     


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCe--EEecCCcEecCcE
Q psy2343         197 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNI--VHFVDDTHIEVDT  272 (396)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~--v~~~dG~~~~~D~  272 (396)
                          .+...                               +.+.++...|++  ...|.+++++.  +.+.+|+.+++|.
T Consensus       180 ----~~~~~-------------------------------~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~  224 (427)
T TIGR03385       180 ----EMNQI-------------------------------VEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADM  224 (427)
T ss_pred             ----HHHHH-------------------------------HHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCE
Confidence                01110                               111111223343  34566676443  3778899999999


Q ss_pred             EEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHHhc
Q psy2343         273 IIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQA  341 (396)
Q Consensus       273 VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l~~  341 (396)
                      ||+|||++++.++++...+..+ ++.+.+.+. +.++.|+||++||+...          .+....|..||+.+|++|.|
T Consensus       225 vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~-~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g  303 (427)
T TIGR03385       225 VILATGIKPNSELAKDSGLKLGETGAIWVNEK-FQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAG  303 (427)
T ss_pred             EEECCCccCCHHHHHhcCcccCCCCCEEECCC-cEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcC
Confidence            9999999999888876566554 355666655 46789999999999742          24577899999999999987


Q ss_pred             c
Q psy2343         342 F  342 (396)
Q Consensus       342 ~  342 (396)
                      .
T Consensus       304 ~  304 (427)
T TIGR03385       304 N  304 (427)
T ss_pred             C
Confidence            5

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.90  E-value=8.7e-23  Score=196.42  Aligned_cols=233  Identities=17%  Similarity=0.183  Sum_probs=161.6

Q ss_pred             ChHHHHHH-HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeec
Q psy2343          47 NHSMMLDY-LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHS  125 (396)
Q Consensus        47 ~~~~~~~Y-l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs  125 (396)
                      ..+++..+ .+.+++++++.  ++++++|++|+++..  +|++ ++.++.||+||||||+  .|..|+++|.-.  +++.
T Consensus        55 ~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~--~~~~p~i~G~~~--v~~~  125 (377)
T PRK04965         55 RADDLTRQSAGEFAEQFNLR--LFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGA--SAFVPPIPGREL--MLTL  125 (377)
T ss_pred             CHHHhhcCCHHHHHHhCCCE--EECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCC--CCCCCCCCCCce--EEEE
Confidence            34555543 66778888887  888999999987543  5665 4566899999999999  889999998211  3332


Q ss_pred             ccCCCC-----CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343         126 MDYKSP-----DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM  200 (396)
Q Consensus       126 ~~~~~~-----~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~  200 (396)
                      ..+.+.     ....+|+|+|||+|.+|+|+|..|++.+.+|+++.+.+.. +|+.            +|.         
T Consensus       126 ~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~-l~~~------------~~~---------  183 (377)
T PRK04965        126 NSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL-LASL------------MPP---------  183 (377)
T ss_pred             CCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc-cchh------------CCH---------
Confidence            222111     1125789999999999999999999999999999987632 1110            010         


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC----eEEecCCcEecCcEEE
Q psy2343         201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFVDDTHIEVDTII  274 (396)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~~~dG~~~~~D~VI  274 (396)
                      .+.                               ..+.+.+....|++  ...|++++..    .|.+.||+++++|.||
T Consensus       184 ~~~-------------------------------~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI  232 (377)
T PRK04965        184 EVS-------------------------------SRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVI  232 (377)
T ss_pred             HHH-------------------------------HHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEE
Confidence            011                               11111122223343  3456666542    3778899999999999


Q ss_pred             EccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcC----chhhHHHHHHHHHHHHHhccc
Q psy2343         275 YATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA----GLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       275 ~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~----~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      +|+|.+++..++....+..++ ++.+.+ .+.++.|+||++||+....    +.+..+..||+.+|++|.|..
T Consensus       233 ~a~G~~p~~~l~~~~gl~~~~-gi~vd~-~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~  303 (377)
T PRK04965        233 AAAGLRPNTALARRAGLAVNR-GIVVDS-YLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQN  303 (377)
T ss_pred             ECcCCCcchHHHHHCCCCcCC-CEEECC-CcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCC
Confidence            999999998877666666554 355554 4578899999999997532    345668899999999998853

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.90  E-value=1.9e-22  Score=201.10  Aligned_cols=231  Identities=16%  Similarity=0.154  Sum_probs=171.3

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccccee
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEIL  123 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~  123 (396)
                      ....++.+++.++++++++.  ++++++|++|+.+++.|.|++.++..+.||+||+|||.  .|+.|++||  .+.+..+
T Consensus       264 ~~~~~l~~~l~~~l~~~gv~--i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa--~~~~~~ipG~~~~~~~~v  339 (515)
T TIGR03140       264 TTGSQLAANLEEHIKQYPID--LMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGA--RWRKLGVPGEKEYIGKGV  339 (515)
T ss_pred             CCHHHHHHHHHHHHHHhCCe--EEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC--CcCCCCCCCHHHcCCCeE
Confidence            35788999999999999987  88899999999877789999888888999999999999  678888998  4556556


Q ss_pred             ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343         124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI  203 (396)
Q Consensus       124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  203 (396)
                      +.+..++...+.+++|+|||+|.+|+|+|..|+..+++|+++.+.+....                     .     ...
T Consensus       340 ~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~---------------------~-----~~l  393 (515)
T TIGR03140       340 AYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA---------------------D-----KVL  393 (515)
T ss_pred             EEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh---------------------h-----HHH
Confidence            66555554456799999999999999999999999999999987652100                     0     111


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccC-CCeE--ecCCcceEeCC-----eEEecCC-----cEecC
Q psy2343         204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH-GDIL--PKDDIKNLNGN-----IVHFVDD-----THIEV  270 (396)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-g~i~--~~~~i~~i~~~-----~v~~~dG-----~~~~~  270 (396)
                      .                                  ..+.. ..|.  ....+.++.++     +|.+.++     +.+++
T Consensus       394 ~----------------------------------~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~  439 (515)
T TIGR03140       394 Q----------------------------------DKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDL  439 (515)
T ss_pred             H----------------------------------HHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEc
Confidence            1                                  11111 1233  33456666543     3666543     35899


Q ss_pred             cEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCcC-chhhHHHHHHHHHHHHHhcc
Q psy2343         271 DTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       271 D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~-~~~~~ae~qa~~~a~~l~~~  342 (396)
                      |.||+|+|.+|+.++++.. +..+ ++.+.+... +.+++|+||++||+.... ..+..|..||+.+|..+.+.
T Consensus       440 D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~-~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~  511 (515)
T TIGR03140       440 DGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDER-GRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDY  511 (515)
T ss_pred             CEEEEEeCCcCCchHHhhh-cccCCCCeEEECCC-CCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHH
Confidence            9999999999999988754 5443 345655544 468999999999997642 34557888888888876654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.89  E-value=8.9e-23  Score=212.01  Aligned_cols=234  Identities=16%  Similarity=0.142  Sum_probs=164.8

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM  126 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~  126 (396)
                      .+++.....++.++.+++  ++++++|++|++..  ++|++.+|.++.||+||||||+  .|+.|++|| ...+ +++..
T Consensus        53 ~~~l~~~~~~~~~~~gv~--~~~g~~V~~Id~~~--k~V~~~~g~~~~yD~LVlATGs--~p~~p~ipG~~~~~-v~~~r  125 (785)
T TIGR02374        53 LDDITLNSKDWYEKHGIT--LYTGETVIQIDTDQ--KQVITDAGRTLSYDKLILATGS--YPFILPIPGADKKG-VYVFR  125 (785)
T ss_pred             HHHccCCCHHHHHHCCCE--EEcCCeEEEEECCC--CEEEECCCcEeeCCEEEECCCC--CcCCCCCCCCCCCC-EEEeC
Confidence            455555555666777877  88899999998743  4788888888999999999999  899999999 4433 33322


Q ss_pred             cCCCCC-----CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHH
Q psy2343         127 DYKSPD-----QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA  201 (396)
Q Consensus       127 ~~~~~~-----~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~  201 (396)
                      .+.+..     ...+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.+ +++.                +..     .
T Consensus       126 t~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l-l~~~----------------ld~-----~  183 (785)
T TIGR02374       126 TIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL-MAKQ----------------LDQ-----T  183 (785)
T ss_pred             CHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch-hhhh----------------cCH-----H
Confidence            222211     125789999999999999999999999999999987632 1111                000     0


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeC----CeEEecCCcEecCcEEEE
Q psy2343         202 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG----NIVHFVDDTHIEVDTIIY  275 (396)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~----~~v~~~dG~~~~~D~VI~  275 (396)
                      ...                               .+.+.+....|+  ....+.++.+    ..|.|+||+.+++|.||+
T Consensus       184 ~~~-------------------------------~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~  232 (785)
T TIGR02374       184 AGR-------------------------------LLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVM  232 (785)
T ss_pred             HHH-------------------------------HHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEE
Confidence            000                               011111112333  3344556643    257899999999999999


Q ss_pred             ccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcC----chhhHHHHHHHHHHHHHhccc
Q psy2343         276 ATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA----GLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       276 aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~----~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      |+|++|+..++....+..+ +++.+.+. +.++.|+||++||+....    ..+..+..||+.+|.+|.|..
T Consensus       233 a~G~~Pn~~la~~~gl~~~-ggI~Vd~~-~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~  302 (785)
T TIGR02374       233 AAGIRPNDELAVSAGIKVN-RGIIVNDS-MQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE  302 (785)
T ss_pred             CCCCCcCcHHHHhcCCccC-CCEEECCC-cccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence            9999999888766666655 45555544 578999999999997532    345667899999999998864

>KOG0404|consensus

Probab=99.89  E-value=1.3e-22  Score=170.49  Aligned_cols=227  Identities=19%  Similarity=0.227  Sum_probs=160.5

Q ss_pred             CCCCCC---ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-
Q psy2343          41 NYPVYP---NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-  116 (396)
Q Consensus        41 ~~~~~p---~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-  116 (396)
                      ++|.||   .+.++.+-++..+++||..  | +-..|.+|+...+-|+|.++.+. ..+|+||+|||+  ..+...+|| 
T Consensus        59 NfPGFPdgi~G~~l~d~mrkqs~r~Gt~--i-~tEtVskv~~sskpF~l~td~~~-v~~~avI~atGA--sAkRl~~pg~  132 (322)
T KOG0404|consen   59 NFPGFPDGITGPELMDKMRKQSERFGTE--I-ITETVSKVDLSSKPFKLWTDARP-VTADAVILATGA--SAKRLHLPGE  132 (322)
T ss_pred             cCCCCCcccccHHHHHHHHHHHHhhcce--e-eeeehhhccccCCCeEEEecCCc-eeeeeEEEeccc--ceeeeecCCC
Confidence            344444   5789999999999999986  4 55688899988889999986655 799999999999  555555666 


Q ss_pred             ---CcccceeecccCCCCCC--CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCc
Q psy2343         117 ---YFSGEILHSMDYKSPDQ--IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN  191 (396)
Q Consensus       117 ---~~~g~~~hs~~~~~~~~--~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~  191 (396)
                         .|.-+-+.+|..|+...  |++|..+|||||.||+|-|..|.+.+++|++++|+..+                    
T Consensus       133 ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~f--------------------  192 (322)
T KOG0404|consen  133 GEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHF--------------------  192 (322)
T ss_pred             CcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhh--------------------
Confidence               48888899999999875  99999999999999999999999999999999999743                    


Q ss_pred             cccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEeCCeEEecCCcEecCc
Q psy2343         192 KFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVD  271 (396)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~~~v~~~dG~~~~~D  271 (396)
                               +....+.+....++.             .....+....+.+..|++.     ..+.-..+...+-+.++++
T Consensus       193 ---------RAs~~Mq~ra~~npn-------------I~v~~nt~~~ea~gd~~~l-----~~l~ikn~~tge~~dl~v~  245 (322)
T KOG0404|consen  193 ---------RASKIMQQRAEKNPN-------------IEVLYNTVAVEALGDGKLL-----NGLRIKNVKTGEETDLPVS  245 (322)
T ss_pred             ---------hHHHHHHHHHhcCCC-------------eEEEechhhhhhccCcccc-----cceEEEecccCcccccccc
Confidence                     122222212111110             0011122233333332211     1111111222233458999


Q ss_pred             EEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccC
Q psy2343         272 TIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNA  320 (396)
Q Consensus       272 ~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~  320 (396)
                      -++++.|-.|+..||+..+....++.+.+-.....+++|++|++||++.
T Consensus       246 GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD  294 (322)
T KOG0404|consen  246 GLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQD  294 (322)
T ss_pred             eeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccch
Confidence            9999999999999999744322345555556777899999999999974

>PLN02507 glutathione reductase

Probab=99.89  E-value=1.1e-22  Score=201.42  Aligned_cols=201  Identities=17%  Similarity=0.155  Sum_probs=141.0

Q ss_pred             CCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhc
Q psy2343          81 EDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASH  157 (396)
Q Consensus        81 ~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~  157 (396)
                      .+.++|++.+|+  ++.||+||||||+  .|..|.+|| ..   ..++.+...... .+|+|+|||+|.+|+|+|..+++
T Consensus       151 ~~~v~V~~~~g~~~~~~~d~LIIATGs--~p~~p~ipG~~~---~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~  224 (499)
T PLN02507        151 PNEVEVTQLDGTKLRYTAKHILIATGS--RAQRPNIPGKEL---AITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRG  224 (499)
T ss_pred             CCEEEEEeCCCcEEEEEcCEEEEecCC--CCCCCCCCCccc---eechHHhhhhhh-cCCeEEEECCcHHHHHHHHHHHH
Confidence            567888887775  4789999999999  889999988 32   223333222222 36899999999999999999999


Q ss_pred             CCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchh
Q psy2343         158 HSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQI  237 (396)
Q Consensus       158 ~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  237 (396)
                      .+++|+++.|.+.. +|.    ...                  .+.+.                               +
T Consensus       225 ~G~~Vtli~~~~~~-l~~----~d~------------------~~~~~-------------------------------l  250 (499)
T PLN02507        225 MGATVDLFFRKELP-LRG----FDD------------------EMRAV-------------------------------V  250 (499)
T ss_pred             cCCeEEEEEecCCc-Ccc----cCH------------------HHHHH-------------------------------H
Confidence            99999999987631 111    000                  11111                               1


Q ss_pred             hhcccCCCeEe--cCCcceEeC--C--eEEecCCcEecCcEEEEccCCCCCCCCC--CcccccccC-CccccccccccCC
Q psy2343         238 LYHIGHGDILP--KDDIKNLNG--N--IVHFVDDTHIEVDTIIYATGYNRHFPFI--DKEKLEWKL-GIPDLFIHIAPRN  308 (396)
Q Consensus       238 ~~~i~~g~i~~--~~~i~~i~~--~--~v~~~dG~~~~~D~VI~aTG~~~~~~~l--~~~~~~~~~-~~~~l~~~~~~~~  308 (396)
                      .+.+.+..|++  ...|+++++  +  .+.+.+|+++++|.||+|+|++|+..+|  +...++.+. +.+.+.+++ .++
T Consensus       251 ~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~-~Ts  329 (499)
T PLN02507        251 ARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYS-RTN  329 (499)
T ss_pred             HHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCC-cCC
Confidence            11112223443  345666642  2  3566788889999999999999998874  444455543 456666554 689


Q ss_pred             CCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         309 LDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       309 ~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      .|+||++||+.......+.|..||+.+|.++.+.
T Consensus       330 ~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~  363 (499)
T PLN02507        330 IPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGG  363 (499)
T ss_pred             CCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCC
Confidence            9999999999866667889999999999999764

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.89  E-value=4.2e-22  Score=195.06  Aligned_cols=233  Identities=18%  Similarity=0.212  Sum_probs=161.3

Q ss_pred             hHHHHHHH-HHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc-Cc--EEEcCEEEEcccCCCCCCCCCCCCCccccee
Q psy2343          48 HSMMLDYL-RSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-GK--KKKYDFIAVCNGAQRVARYPNYSGYFSGEIL  123 (396)
Q Consensus        48 ~~~~~~Yl-~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~-g~--~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~  123 (396)
                      .++...|. +.+.++.++.  ++++++|++|+.+++...+...+ ++  ++.||+||||||+  .|+.|.+++.   .++
T Consensus        56 ~~~~~~~~~~~~~~~~~i~--v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs--~~~~~~~~~~---~~~  128 (438)
T PRK13512         56 RKYALAYTPEKFYDRKQIT--VKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGA--SANSLGFESD---ITF  128 (438)
T ss_pred             HHHcccCCHHHHHHhCCCE--EEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCC--CCCCCCCCCC---CeE
Confidence            33443332 4555667876  78899999999887766655432 22  3689999999999  8888876541   122


Q ss_pred             ecccCCCC-------CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccCh
Q psy2343         124 HSMDYKSP-------DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK  196 (396)
Q Consensus       124 hs~~~~~~-------~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~  196 (396)
                      ...++.+.       ....+++|+|||+|.+|+|+|..+++.+.+|+++.|++.. +|..    .         .     
T Consensus       129 ~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l-~~~~----d---------~-----  189 (438)
T PRK13512        129 TLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKI-NKLM----D---------A-----  189 (438)
T ss_pred             EecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc-chhc----C---------H-----
Confidence            22211111       1224689999999999999999999999999999997632 1110    0         0     


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCeEEecCCcEecCcEEE
Q psy2343         197 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNIVHFVDDTHIEVDTII  274 (396)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~v~~~dG~~~~~D~VI  274 (396)
                          .+                               ...+.+.+.+..|++  ...|+++++..|++++|+.+++|.||
T Consensus       190 ----~~-------------------------------~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl  234 (438)
T PRK13512        190 ----DM-------------------------------NQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYDMII  234 (438)
T ss_pred             ----HH-------------------------------HHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEeCEEE
Confidence                11                               111122222234444  45688888888999999999999999


Q ss_pred             EccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHHhcc
Q psy2343         275 YATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       275 ~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      +|+|++++.++++...+..+ ++.+.+.+. +.++.|+||++||+...          ....+.+..||+.+|+++.|.
T Consensus       235 ~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~  312 (438)
T PRK13512        235 EGVGTHPNSKFIESSNIKLDDKGFIPVNDK-FETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGN  312 (438)
T ss_pred             ECcCCCcChHHHHhcCcccCCCCcEEECCC-cccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCC
Confidence            99999999988877666654 355667655 46889999999999641          234556788999999999874

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.89  E-value=2.5e-22  Score=197.64  Aligned_cols=239  Identities=17%  Similarity=0.174  Sum_probs=163.2

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc-cCcEEE--cCEEEEcccCCCCCCCCCCCC-Ccccc
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NGKKKK--YDFIAVCNGAQRVARYPNYSG-YFSGE  121 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~-~g~~~~--~d~vvvAtG~~~~p~~P~~~g-~~~g~  121 (396)
                      ....++..+....++++++.  ++++++|++|+++++.+.++.. ++.++.  ||+||||||+  .|+.|.++| ... .
T Consensus        53 ~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~--~~~~~~i~g~~~~-~  127 (444)
T PRK09564         53 DDPNTMIARTPEEFIKSGID--VKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGA--RPIIPPIKNINLE-N  127 (444)
T ss_pred             CCHHHhhcCCHHHHHHCCCe--EEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCC--CCCCCCCCCcCCC-C
Confidence            44456666666767778876  7889999999987776666542 255556  9999999999  888898888 333 3


Q ss_pred             eeecccCCCCC-------CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCcccc
Q psy2343         122 ILHSMDYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS  194 (396)
Q Consensus       122 ~~hs~~~~~~~-------~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~  194 (396)
                      +++...+.+..       ...+++|+|||+|.+|+|+|..+.+.+++|+++.+.+... |.                .+.
T Consensus       128 v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-~~----------------~~~  190 (444)
T PRK09564        128 VYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL-PD----------------SFD  190 (444)
T ss_pred             EEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC-ch----------------hcC
Confidence            45544332221       2357899999999999999999999999999998875321 11                000


Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCe---EEecCCcEec
Q psy2343         195 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNI---VHFVDDTHIE  269 (396)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~---v~~~dG~~~~  269 (396)
                      .     .+.+.+                               .+.+....|++  ...|.++++++   ....++..++
T Consensus       191 ~-----~~~~~l-------------------------------~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~  234 (444)
T PRK09564        191 K-----EITDVM-------------------------------EEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYE  234 (444)
T ss_pred             H-----HHHHHH-------------------------------HHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEE
Confidence            0     111111                               11111112332  34566665332   2234556799


Q ss_pred             CcEEEEccCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHH
Q psy2343         270 VDTIIYATGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSY  338 (396)
Q Consensus       270 ~D~VI~aTG~~~~~~~l~~~~~~~-~~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~  338 (396)
                      +|.||+|+|++++.++++...++. +++.+.+.+.+ .++.|+||++||+...          ....+.|..||+.+|++
T Consensus       235 ~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~n  313 (444)
T PRK09564        235 ADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYG-ETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGEN  313 (444)
T ss_pred             cCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCc-ccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHH
Confidence            999999999999988888766654 34557666554 5789999999999742          23567899999999999


Q ss_pred             Hhccc
Q psy2343         339 IQAFI  343 (396)
Q Consensus       339 l~~~~  343 (396)
                      |.|.-
T Consensus       314 i~g~~  318 (444)
T PRK09564        314 LAGRH  318 (444)
T ss_pred             hcCCC
Confidence            98753

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.89  E-value=3.6e-22  Score=207.40  Aligned_cols=235  Identities=15%  Similarity=0.110  Sum_probs=165.5

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM  126 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~  126 (396)
                      .+++......+.+..++.  ++.+++|++|++..  ..|++.+|+++.||+||||||+  .|..|++|| ...+ ++...
T Consensus        58 ~~~l~~~~~~~~~~~gI~--~~~g~~V~~Id~~~--~~V~~~~G~~i~yD~LVIATGs--~p~~p~ipG~~~~~-v~~~r  130 (847)
T PRK14989         58 AEELSLVREGFYEKHGIK--VLVGERAITINRQE--KVIHSSAGRTVFYDKLIMATGS--YPWIPPIKGSETQD-CFVYR  130 (847)
T ss_pred             HHHccCCCHHHHHhCCCE--EEcCCEEEEEeCCC--cEEEECCCcEEECCEEEECCCC--CcCCCCCCCCCCCC-eEEEC
Confidence            355555556667778887  88899999998743  4677888888999999999999  899999998 3322 33322


Q ss_pred             cCCCCC-----CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHH
Q psy2343         127 DYKSPD-----QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA  201 (396)
Q Consensus       127 ~~~~~~-----~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~  201 (396)
                      .+.+..     ...+++++|||+|.+|+|+|..|++.+.+|+++.+.+.. +|+.                +..     .
T Consensus       131 t~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l-l~~~----------------ld~-----~  188 (847)
T PRK14989        131 TIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML-MAEQ----------------LDQ-----M  188 (847)
T ss_pred             CHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc-hhhh----------------cCH-----H
Confidence            222221     125789999999999999999999999999999987632 1111                000     1


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC------CeEEecCCcEecCcEE
Q psy2343         202 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG------NIVHFVDDTHIEVDTI  273 (396)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~------~~v~~~dG~~~~~D~V  273 (396)
                      ...                               .+.+.+....|++  ...++++.+      ..|.+.||+.+++|.|
T Consensus       189 ~~~-------------------------------~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~V  237 (847)
T PRK14989        189 GGE-------------------------------QLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFI  237 (847)
T ss_pred             HHH-------------------------------HHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEE
Confidence            111                               1111122223443  345666642      2478899999999999


Q ss_pred             EEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc----CchhhHHHHHHHHHHHHHhccc
Q psy2343         274 IYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----AGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       274 I~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~----~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      |+|+|.+|+..++....+..+ .+++.+..+ +.++.|+||++||+...    ..++..+..||+.+|.+|.|..
T Consensus       238 v~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~-l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~  311 (847)
T PRK14989        238 VFSTGIRPQDKLATQCGLAVAPRGGIVINDS-CQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSE  311 (847)
T ss_pred             EECCCcccCchHHhhcCccCCCCCcEEECCC-CcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCC
Confidence            999999999888766666654 355666554 57889999999999753    2356778899999999998864

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.88  E-value=2.1e-22  Score=189.54  Aligned_cols=240  Identities=19%  Similarity=0.272  Sum_probs=169.4

Q ss_pred             CCCChHHHHHHHHHHHHHcCCCCceE-eCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccc
Q psy2343          44 VYPNHSMMLDYLRSYAKKFDVYNHSI-FNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSG  120 (396)
Q Consensus        44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~-~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g  120 (396)
                      +-++.+++.--++..++..+   .+. ...+|++|+.+.+  +|+++++..+.||+||||+|+  .++.+.+||  ++.-
T Consensus        52 g~l~~~~i~~p~~~~~~~~~---~v~~~~~~V~~ID~~~k--~V~~~~~~~i~YD~LVvalGs--~~~~fgi~G~~E~a~  124 (405)
T COG1252          52 GTLSESEIAIPLRALLRKSG---NVQFVQGEVTDIDRDAK--KVTLADLGEISYDYLVVALGS--ETNYFGIPGAAEYAF  124 (405)
T ss_pred             CCCChhheeccHHHHhcccC---ceEEEEEEEEEEcccCC--EEEeCCCccccccEEEEecCC--cCCcCCCCCHHHhCC
Confidence            44566788888888887554   133 3668999998766  777877667999999999999  899999999  3221


Q ss_pred             --ceee-ccc--------CCCCCCCCC----CeEEEEcCCCcHHHHHHHHhcCCC-------------cEEEEeccCcee
Q psy2343         121 --EILH-SMD--------YKSPDQIRN----KRVLVVGAGNSGCDIAVDASHHSE-------------KVYHSTRRGYHY  172 (396)
Q Consensus       121 --~~~h-s~~--------~~~~~~~~~----k~VvVVG~G~sa~d~a~~l~~~~~-------------~V~l~~r~~~~~  172 (396)
                        +.+. +..        +........    .+|+|||||.||+|+|.+|++...             +|+++.+.+. +
T Consensus       125 ~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~-I  203 (405)
T COG1252         125 GLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPR-I  203 (405)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCch-h
Confidence              1000 000        011111111    269999999999999999987532             7888888753 2


Q ss_pred             ecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCC--CeEecC
Q psy2343         173 YPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG--DILPKD  250 (396)
Q Consensus       173 ~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g--~i~~~~  250 (396)
                      +|.             +|..+..     .                                   ..+.+.+-  +|.+..
T Consensus       204 Lp~-------------~~~~l~~-----~-----------------------------------a~~~L~~~GV~v~l~~  230 (405)
T COG1252         204 LPM-------------FPPKLSK-----Y-----------------------------------AERALEKLGVEVLLGT  230 (405)
T ss_pred             ccC-------------CCHHHHH-----H-----------------------------------HHHHHHHCCCEEEcCC
Confidence            221             1111111     1                                   11122222  444567


Q ss_pred             CcceEeCCeEEecCCcE-ecCcEEEEccCCCCCCCCCCc-cccccc-CCccccccccccCCCCcEEEEecccCc------
Q psy2343         251 DIKNLNGNIVHFVDDTH-IEVDTIIYATGYNRHFPFIDK-EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA------  321 (396)
Q Consensus       251 ~i~~i~~~~v~~~dG~~-~~~D~VI~aTG~~~~~~~l~~-~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~------  321 (396)
                      .|+++++++|++.+|.. +++|.||||+|.+++ |++.. ..++.+ .+++.+...+..+++|+||++||+...      
T Consensus       231 ~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~  309 (405)
T COG1252         231 PVTEVTPDGVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPV  309 (405)
T ss_pred             ceEEECCCcEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCC
Confidence            89999999999999995 999999999999987 56654 234443 478888899999999999999999743      


Q ss_pred             CchhhHHHHHHHHHHHHHhccccC
Q psy2343         322 AGLGDGLRLQGQFIRSYIQAFIRK  345 (396)
Q Consensus       322 ~~~~~~ae~qa~~~a~~l~~~~~l  345 (396)
                      .+..+.|.+||+++|++|...++.
T Consensus       310 P~tAQ~A~Qqg~~~a~ni~~~l~g  333 (405)
T COG1252         310 PPTAQAAHQQGEYAAKNIKARLKG  333 (405)
T ss_pred             CChhHHHHHHHHHHHHHHHHHhcC
Confidence            366789999999999999888876

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.88  E-value=1.2e-21  Score=193.66  Aligned_cols=225  Identities=18%  Similarity=0.198  Sum_probs=149.5

Q ss_pred             HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCC
Q psy2343          55 LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPD  132 (396)
Q Consensus        55 l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~  132 (396)
                      ++..+++.++.  ++.+ ++..++  .+.++|...+|+  ++.||+||||||+  .|..|++++.....++++.+.... 
T Consensus       100 ~~~~~~~~~v~--~~~g-~~~~~~--~~~~~v~~~~g~~~~~~~d~lviATGs--~p~~p~~~~~~~~~v~~~~~~~~~-  171 (461)
T PRK05249        100 RRGQYERNRVD--LIQG-RARFVD--PHTVEVECPDGEVETLTADKIVIATGS--RPYRPPDVDFDHPRIYDSDSILSL-  171 (461)
T ss_pred             HHHHHHHCCCE--EEEE-EEEEec--CCEEEEEeCCCceEEEEcCEEEEcCCC--CCCCCCCCCCCCCeEEcHHHhhch-
Confidence            33444445543  3333 333332  456778776664  5899999999998  888887666211234555444433 


Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGF  212 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  212 (396)
                      ...+|+|+|||+|.+|+|+|..+++.+.+|+++.|++.. +|..    ..                  .+...       
T Consensus       172 ~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~-l~~~----d~------------------~~~~~-------  221 (461)
T PRK05249        172 DHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL-LSFL----DD------------------EISDA-------  221 (461)
T ss_pred             hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc-CCcC----CH------------------HHHHH-------
Confidence            235799999999999999999999999999999987632 1110    00                  11111       


Q ss_pred             CCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEe--CCe--EEecCCcEecCcEEEEccCCCCCCCCC
Q psy2343         213 DGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLN--GNI--VHFVDDTHIEVDTIIYATGYNRHFPFI  286 (396)
Q Consensus       213 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~--~~~--v~~~dG~~~~~D~VI~aTG~~~~~~~l  286 (396)
                                              +.+.+....|++  ...+++++  +++  +.+.+|+.+++|.||+|+|++|+...+
T Consensus       222 ------------------------l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l  277 (461)
T PRK05249        222 ------------------------LSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGL  277 (461)
T ss_pred             ------------------------HHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCC
Confidence                                    111111123333  34566664  333  456788889999999999999998754


Q ss_pred             --Cccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         287 --DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       287 --~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                        +...+..+ ++.+.+.+. +.++.|+||++||+.......+.|..||+.+|..+.|.
T Consensus       278 ~l~~~g~~~~~~G~i~vd~~-~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~  335 (461)
T PRK05249        278 NLENAGLEADSRGQLKVNEN-YQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGE  335 (461)
T ss_pred             CchhhCcEecCCCcEeeCCC-cccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence              44445543 344655544 57889999999999765567788999999999999875

>PRK14727 putative mercuric reductase; Provisional

Probab=99.88  E-value=8.4e-22  Score=194.99  Aligned_cols=202  Identities=11%  Similarity=0.041  Sum_probs=136.7

Q ss_pred             CCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcC
Q psy2343          81 EDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH  158 (396)
Q Consensus        81 ~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~  158 (396)
                      .+.+.|...+|.  ++.||+||||||+  .|..|++||......+++.+.... ...+|+|+|||+|.+|+|+|..+++.
T Consensus       134 ~~~v~v~~~~g~~~~~~~d~lViATGs--~p~~p~i~G~~~~~~~~~~~~l~~-~~~~k~vvVIGgG~iG~E~A~~l~~~  210 (479)
T PRK14727        134 GNTLVVRLHDGGERVLAADRCLIATGS--TPTIPPIPGLMDTPYWTSTEALFS-DELPASLTVIGSSVVAAEIAQAYARL  210 (479)
T ss_pred             CCEEEEEeCCCceEEEEeCEEEEecCC--CCCCCCCCCcCccceecchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHc
Confidence            567888777764  5899999999999  899999998322233333222111 22468999999999999999999999


Q ss_pred             CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhh
Q psy2343         159 SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQIL  238 (396)
Q Consensus       159 ~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  238 (396)
                      +.+|+++.|..  .+|..      |       .         .+.+.                               +.
T Consensus       211 G~~Vtlv~~~~--~l~~~------d-------~---------~~~~~-------------------------------l~  235 (479)
T PRK14727        211 GSRVTILARST--LLFRE------D-------P---------LLGET-------------------------------LT  235 (479)
T ss_pred             CCEEEEEEcCC--CCCcc------h-------H---------HHHHH-------------------------------HH
Confidence            99999998753  22211      0       0         11111                               11


Q ss_pred             hcccCCCeEe--cCCcceEe--CCeE--EecCCcEecCcEEEEccCCCCCCCCCC--ccccccc-CCccccccccccCCC
Q psy2343         239 YHIGHGDILP--KDDIKNLN--GNIV--HFVDDTHIEVDTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNL  309 (396)
Q Consensus       239 ~~i~~g~i~~--~~~i~~i~--~~~v--~~~dG~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~-~~~~~l~~~~~~~~~  309 (396)
                      +.+....|++  ...+++++  ++.+  .+.+| ++++|.||+|+|+.|+..+|.  ...+..+ ++.+.+.+. +.++.
T Consensus       236 ~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~-~~Ts~  313 (479)
T PRK14727        236 ACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPA-METSA  313 (479)
T ss_pred             HHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCC-eecCC
Confidence            1122223333  23455554  2333  33344 588999999999999988653  3345543 345666655 47899


Q ss_pred             CcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         310 DNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       310 p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      |+||++||+.......+.|..||+.+|..+.|.
T Consensus       314 ~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~  346 (479)
T PRK14727        314 PDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGG  346 (479)
T ss_pred             CCEEEeeecCCcchhhhHHHHHHHHHHHHHcCC
Confidence            999999999876667788999999999999875

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.88  E-value=3.2e-22  Score=195.03  Aligned_cols=237  Identities=17%  Similarity=0.190  Sum_probs=163.0

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE--------ccCcEEEcCEEEEcccCCCCCCCCCCCCCc
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL--------SNGKKKKYDFIAVCNGAQRVARYPNYSGYF  118 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~--------~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~  118 (396)
                      ..+++...++..++.+++.   ....+|++|+.+++.+.+..        .++.++.||+||||||+  .|..|.+||.-
T Consensus        60 ~~~~~~~~~~~~~~~~~~~---~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs--~~~~~~ipG~~  134 (424)
T PTZ00318         60 EFRSICEPVRPALAKLPNR---YLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGA--RPNTFNIPGVE  134 (424)
T ss_pred             ChHHhHHHHHHHhccCCeE---EEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCc--ccCCCCCCCHH
Confidence            3456666677777666642   34679999998877666632        34567999999999999  88888888811


Q ss_pred             ccceeecccCCC---------------------C-CCCCCCeEEEEcCCCcHHHHHHHHhcC--------------CCcE
Q psy2343         119 SGEILHSMDYKS---------------------P-DQIRNKRVLVVGAGNSGCDIAVDASHH--------------SEKV  162 (396)
Q Consensus       119 ~g~~~hs~~~~~---------------------~-~~~~~k~VvVVG~G~sa~d~a~~l~~~--------------~~~V  162 (396)
                      . ..+..+.+.+                     . ...+.++|+|||+|.+|+|+|.+|+..              ..+|
T Consensus       135 e-~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~V  213 (424)
T PTZ00318        135 E-RAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKV  213 (424)
T ss_pred             H-cCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEE
Confidence            1 0111111100                     0 011335999999999999999999863              4679


Q ss_pred             EEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhccc
Q psy2343         163 YHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIG  242 (396)
Q Consensus       163 ~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~  242 (396)
                      +++++.+.. +|..    +         .         .+                               +..+.+.+.
T Consensus       214 tlv~~~~~l-l~~~----~---------~---------~~-------------------------------~~~~~~~L~  239 (424)
T PTZ00318        214 TVLEAGSEV-LGSF----D---------Q---------AL-------------------------------RKYGQRRLR  239 (424)
T ss_pred             EEEcCCCcc-cccC----C---------H---------HH-------------------------------HHHHHHHHH
Confidence            999987532 1110    0         0         11                               111122222


Q ss_pred             CCCeEe--cCCcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEeccc
Q psy2343         243 HGDILP--KDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVN  319 (396)
Q Consensus       243 ~g~i~~--~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~  319 (396)
                      +..|++  ...|++++++.|+++||+++++|.||+|+|.+++ +++....+..+ +|.+.+.+.+..+++|+||++||+.
T Consensus       240 ~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a  318 (424)
T PTZ00318        240 RLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCA  318 (424)
T ss_pred             HCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccc
Confidence            234554  4578899989999999999999999999999987 67665545443 4677777776668999999999997


Q ss_pred             Cc-----CchhhHHHHHHHHHHHHHhcccc
Q psy2343         320 AA-----AGLGDGLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       320 ~~-----~~~~~~ae~qa~~~a~~l~~~~~  344 (396)
                      ..     ......|..||+.+|++|.+.+.
T Consensus       319 ~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~  348 (424)
T PTZ00318        319 ANEERPLPTLAQVASQQGVYLAKEFNNELK  348 (424)
T ss_pred             cCCCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence            53     34567899999999999987764

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.87  E-value=2.2e-21  Score=190.47  Aligned_cols=196  Identities=19%  Similarity=0.207  Sum_probs=134.9

Q ss_pred             EEEEccCcEEEcCEEEEcccCCCCCCCC-CCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcE
Q psy2343          85 EVELSNGKKKKYDFIAVCNGAQRVARYP-NYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKV  162 (396)
Q Consensus        85 ~V~~~~g~~~~~d~vvvAtG~~~~p~~P-~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V  162 (396)
                      +|.+ +++.+.||+||||||+  .|+.| .+|| ..   .+++.++..... .+++|+|||+|.+|+|+|..++..+.+|
T Consensus       120 ~v~v-~~~~~~~d~vIiAtGs--~p~~p~~i~g~~~---~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~V  192 (450)
T TIGR01421       120 TVEV-NGRDYTAPHILIATGG--KPSFPENIPGAEL---GTDSDGFFALEE-LPKRVVIVGAGYIAVELAGVLHGLGSET  192 (450)
T ss_pred             EEEE-CCEEEEeCEEEEecCC--CCCCCCCCCCCce---eEcHHHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCcE
Confidence            4444 4556899999999998  89988 8888 32   122323322222 3689999999999999999999999999


Q ss_pred             EEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhccc
Q psy2343         163 YHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIG  242 (396)
Q Consensus       163 ~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~  242 (396)
                      +++.|.+... +..    +         .         .+.+                               .+.+.+.
T Consensus       193 tli~~~~~il-~~~----d---------~---------~~~~-------------------------------~~~~~l~  218 (450)
T TIGR01421       193 HLVIRHERVL-RSF----D---------S---------MISE-------------------------------TITEEYE  218 (450)
T ss_pred             EEEecCCCCC-ccc----C---------H---------HHHH-------------------------------HHHHHHH
Confidence            9999876321 110    1         0         1111                               1111122


Q ss_pred             CCCeEec--CCcceEeC---C--eEEecCC-cEecCcEEEEccCCCCCCCCC--CcccccccC-CccccccccccCCCCc
Q psy2343         243 HGDILPK--DDIKNLNG---N--IVHFVDD-THIEVDTIIYATGYNRHFPFI--DKEKLEWKL-GIPDLFIHIAPRNLDN  311 (396)
Q Consensus       243 ~g~i~~~--~~i~~i~~---~--~v~~~dG-~~~~~D~VI~aTG~~~~~~~l--~~~~~~~~~-~~~~l~~~~~~~~~p~  311 (396)
                      ...|++.  ..++++++   +  .+++++| +.+++|.||+|+|++|+..+|  +...++.+. +.+.+.+. +.++.|+
T Consensus       219 ~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-~~T~~p~  297 (450)
T TIGR01421       219 KEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEY-QNTNVPG  297 (450)
T ss_pred             HcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCC-CcCCCCC
Confidence            2234432  34556642   1  3667788 469999999999999998864  444455543 44555554 5789999


Q ss_pred             EEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         312 IFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       312 l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      ||++||+.......+.|..||+.+|..+.+.
T Consensus       298 IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~~  328 (450)
T TIGR01421       298 IYALGDVVGKVELTPVAIAAGRKLSERLFNG  328 (450)
T ss_pred             EEEEEecCCCcccHHHHHHHHHHHHHHHhcC
Confidence            9999999876677889999999999999853

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.87  E-value=3.3e-21  Score=190.41  Aligned_cols=270  Identities=17%  Similarity=0.155  Sum_probs=166.7

Q ss_pred             CccccccCCCCCCCCCCceeeecCCCcccc----CCCCCCCCCCCCCChHHHHHHHHHHHH-----------HcCCCCce
Q psy2343           4 DLGGVWNSQASCGRVYPSLHLISPKFNTQV----PDYPMPDNYPVYPNHSMMLDYLRSYAK-----------KFDVYNHS   68 (396)
Q Consensus         4 ~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~----~~~p~p~~~~~~p~~~~~~~Yl~~~~~-----------~~~l~~~i   68 (396)
                      .+||+|.+.    .|.|+-.+......+.+    ..|-.... ...+...++.+|.+++++           +.++.  +
T Consensus        37 ~~GG~c~~~----gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~  109 (462)
T PRK06416         37 KLGGTCLNR----GCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVD--I  109 (462)
T ss_pred             ccccceeec----ccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--E
Confidence            389999765    36666443333332221    11211111 123456778888655444           33433  3


Q ss_pred             EeCcEEEEEEEeCCeEEEEEcc-CcEEEcCEEEEcccCCCCCCCCCCCC-Ccccc-eeecccCCCCCCCCCCeEEEEcCC
Q psy2343          69 IFNTEVINLEQYEDIWEVELSN-GKKKKYDFIAVCNGAQRVARYPNYSG-YFSGE-ILHSMDYKSPDQIRNKRVLVVGAG  145 (396)
Q Consensus        69 ~~~t~V~~v~~~~~~~~V~~~~-g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~-~~hs~~~~~~~~~~~k~VvVVG~G  145 (396)
                      ..+ +++.++  .+.++|...+ ++++.||+||||||+  .|..|  || .+.+. ++++.+.... ...+|+|+|||+|
T Consensus       110 ~~g-~~~~~~--~~~~~v~~~~~~~~~~~d~lViAtGs--~p~~~--pg~~~~~~~v~~~~~~~~~-~~~~~~vvVvGgG  181 (462)
T PRK06416        110 IRG-EAKLVD--PNTVRVMTEDGEQTYTAKNIILATGS--RPREL--PGIEIDGRVIWTSDEALNL-DEVPKSLVVIGGG  181 (462)
T ss_pred             EEE-EEEEcc--CCEEEEecCCCcEEEEeCEEEEeCCC--CCCCC--CCCCCCCCeEEcchHhhCc-cccCCeEEEECCC
Confidence            333 333332  3455665433 356899999999999  67654  45 34443 3343333222 2346899999999


Q ss_pred             CcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy2343         146 NSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHP  225 (396)
Q Consensus       146 ~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  225 (396)
                      .+|+|+|..+++.+.+|+++.|.+.. +|..    .         .         .+..                     
T Consensus       182 ~~g~E~A~~l~~~g~~Vtli~~~~~~-l~~~----~---------~---------~~~~---------------------  217 (462)
T PRK06416        182 YIGVEFASAYASLGAEVTIVEALPRI-LPGE----D---------K---------EISK---------------------  217 (462)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEcCCCc-CCcC----C---------H---------HHHH---------------------
Confidence            99999999999999999999987632 2211    0         0         0111                     


Q ss_pred             CCcccCccCchhhhcccCCCeEe--cCCcceEeCC--e--EEecCC---cEecCcEEEEccCCCCCCCCC--Cccccccc
Q psy2343         226 LDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN--I--VHFVDD---THIEVDTIIYATGYNRHFPFI--DKEKLEWK  294 (396)
Q Consensus       226 ~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~--~--v~~~dG---~~~~~D~VI~aTG~~~~~~~l--~~~~~~~~  294 (396)
                                .+.+.+.+..|++  ...|++++++  .  +.+.+|   +.+++|.||+|+|.+|+..++  +...+..+
T Consensus       218 ----------~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~  287 (462)
T PRK06416        218 ----------LAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD  287 (462)
T ss_pred             ----------HHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec
Confidence                      1111121223443  3456666532  3  445566   568999999999999998875  34455555


Q ss_pred             CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343         295 LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       295 ~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      .+.+.+..++ .++.|+||++||+.........|..||+.+|.++.+..
T Consensus       288 ~g~i~vd~~~-~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~  335 (462)
T PRK06416        288 RGFIEVDEQL-RTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNP  335 (462)
T ss_pred             CCEEeECCCC-ccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCCC
Confidence            4556665554 58899999999998655678899999999999998753

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.87  E-value=1.3e-21  Score=189.30  Aligned_cols=223  Identities=15%  Similarity=0.129  Sum_probs=152.1

Q ss_pred             HHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCC-----CC
Q psy2343          60 KKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPD-----QI  134 (396)
Q Consensus        60 ~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~-----~~  134 (396)
                      ...++.  ++.+++|..|+.++  ..|++++|+++.||+||||||+  .|+.|++++.....++......+..     ..
T Consensus        69 ~~~~i~--~~~g~~V~~id~~~--~~v~~~~g~~~~yd~LViATGs--~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~  142 (396)
T PRK09754         69 QENNVH--LHSGVTIKTLGRDT--RELVLTNGESWHWDQLFIATGA--AARPLPLLDALGERCFTLRHAGDAARLREVLQ  142 (396)
T ss_pred             HHCCCE--EEcCCEEEEEECCC--CEEEECCCCEEEcCEEEEccCC--CCCCCCCCCcCCCCEEecCCHHHHHHHHHHhh
Confidence            345666  77889999998754  3677778888999999999999  7776666652222233322222211     12


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG  214 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  214 (396)
                      .+|+|+|||+|.+|+|+|..|++.+.+|+++.+.+.. +++.            ++.         .+.+.         
T Consensus       143 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~-l~~~------------~~~---------~~~~~---------  191 (396)
T PRK09754        143 PERSVVIVGAGTIGLELAASATQRRCKVTVIELAATV-MGRN------------APP---------PVQRY---------  191 (396)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc-hhhh------------cCH---------HHHHH---------
Confidence            5799999999999999999999999999999987632 1110            000         01111         


Q ss_pred             CCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC---eEEecCCcEecCcEEEEccCCCCCCCCCCcc
Q psy2343         215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN---IVHFVDDTHIEVDTIIYATGYNRHFPFIDKE  289 (396)
Q Consensus       215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~---~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~  289 (396)
                                            +.+.+.+..|++  ...|++++.+   .+.+.||+++++|.||+|+|.+++..++...
T Consensus       192 ----------------------l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~  249 (396)
T PRK09754        192 ----------------------LLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREA  249 (396)
T ss_pred             ----------------------HHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHhc
Confidence                                  111111123333  3456666532   3567899999999999999999997777655


Q ss_pred             cccccCCccccccccccCCCCcEEEEecccCc---------CchhhHHHHHHHHHHHHHhccc
Q psy2343         290 KLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA---------AGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       290 ~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~---------~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      .+..+ +++.+..+ +.++.|+||++||+...         ...|+.|..||+.+|++|.|..
T Consensus       250 gl~~~-~gi~vd~~-~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~  310 (396)
T PRK09754        250 NLDTA-NGIVIDEA-CRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP  310 (396)
T ss_pred             CCCcC-CCEEECCC-CccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC
Confidence            55544 45655554 46789999999998732         1346789999999999998763

>PRK14694 putative mercuric reductase; Provisional

Probab=99.86  E-value=7.9e-21  Score=187.71  Aligned_cols=235  Identities=15%  Similarity=0.123  Sum_probs=152.6

Q ss_pred             ChHHHHHHHHHHHHHcC-------CCC--ceE-eCcEEEEEEEeCCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFD-------VYN--HSI-FNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNY  114 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~-------l~~--~i~-~~t~V~~v~~~~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~  114 (396)
                      +.+++.++.+..++.+.       +..  .|. +..+|..++  .+.|+|++.+|.  ++.||+||||||+  .|..|++
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id--~~~~~V~~~~g~~~~~~~d~lViATGs--~p~~p~i  157 (468)
T PRK14694         82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVD--ERTLTVTLNDGGEQTVHFDRAFIGTGA--RPAEPPV  157 (468)
T ss_pred             CHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEec--CCEEEEEecCCCeEEEECCEEEEeCCC--CCCCCCC
Confidence            45666666666555431       110  121 223444443  567999988763  6899999999999  8999999


Q ss_pred             CCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCcccc
Q psy2343         115 SGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS  194 (396)
Q Consensus       115 ~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~  194 (396)
                      ||.....++++.+.... ...+++|+|||+|.+|+|+|..+++.+.+|+++.+..  .+|..    ..            
T Consensus       158 ~G~~~~~~~~~~~~~~l-~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~--~l~~~----~~------------  218 (468)
T PRK14694        158 PGLAETPYLTSTSALEL-DHIPERLLVIGASVVALELAQAFARLGSRVTVLARSR--VLSQE----DP------------  218 (468)
T ss_pred             CCCCCCceEcchhhhch-hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC--CCCCC----CH------------
Confidence            98221234454332222 2347899999999999999999999999999998742  22211    00            


Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--CeEEe-cCCcEec
Q psy2343         195 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NIVHF-VDDTHIE  269 (396)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~v~~-~dG~~~~  269 (396)
                            .+..                               .+.+.+....|++  ...+.+++.  ..+.+ .++..++
T Consensus       219 ------~~~~-------------------------------~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~  261 (468)
T PRK14694        219 ------AVGE-------------------------------AIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLR  261 (468)
T ss_pred             ------HHHH-------------------------------HHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEE
Confidence                  1111                               1111111223333  334555543  22322 2344699


Q ss_pred             CcEEEEccCCCCCCCCCC--cccccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         270 VDTIIYATGYNRHFPFID--KEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       270 ~D~VI~aTG~~~~~~~l~--~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      +|.||+|+|.+|+..++.  ...++.+++.+.+.++ +.++.|+||++||+.......+.|..||+.+|.++.+.
T Consensus       262 ~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~  335 (468)
T PRK14694        262 AEQLLVATGRTPNTENLNLESIGVETERGAIRIDEH-LQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGG  335 (468)
T ss_pred             eCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCC-cccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCC
Confidence            999999999999988763  2334444555666555 46789999999999876677788999999999999765

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.86  E-value=2e-20  Score=187.99  Aligned_cols=228  Identities=18%  Similarity=0.194  Sum_probs=164.5

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccccee
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEIL  123 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~  123 (396)
                      +++.++.+++++.++++++.  + ++++|+.++.+++.+.|.+.++. +.+++||+|||+  .|+.|++||  .+.+..+
T Consensus        57 ~~~~~l~~~l~~~~~~~gv~--~-~~~~V~~i~~~~~~~~V~~~~g~-~~a~~lVlATGa--~p~~~~ipG~~~~~~~~v  130 (555)
T TIGR03143        57 TTGPELMQEMRQQAQDFGVK--F-LQAEVLDVDFDGDIKTIKTARGD-YKTLAVLIATGA--SPRKLGFPGEEEFTGRGV  130 (555)
T ss_pred             CCHHHHHHHHHHHHHHcCCE--E-eccEEEEEEecCCEEEEEecCCE-EEEeEEEECCCC--ccCCCCCCCHHHhCCceE
Confidence            46789999999999999976  4 58899999887677888886664 789999999999  889999999  5667777


Q ss_pred             ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343         124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI  203 (396)
Q Consensus       124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  203 (396)
                      |.+..++...+.+++|+|||+|.+|+|+|..|++.+++|+++.|.+.+..+                    .     ...
T Consensus       131 ~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~--------------------~-----~~~  185 (555)
T TIGR03143       131 AYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCA--------------------K-----LIA  185 (555)
T ss_pred             EEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccccC--------------------H-----HHH
Confidence            776666666678999999999999999999999999999999997632100                    0     111


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeCCe----EEe---cCCcEe----cC
Q psy2343         204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGNI----VHF---VDDTHI----EV  270 (396)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~~~----v~~---~dG~~~----~~  270 (396)
                      ..+.                                  ...+|+  ....|.++.++.    +.+   .+|+..    ++
T Consensus       186 ~~~~----------------------------------~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~  231 (555)
T TIGR03143       186 EKVK----------------------------------NHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPK  231 (555)
T ss_pred             HHHH----------------------------------hCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccc
Confidence            1111                                  111233  334566665432    222   356542    36


Q ss_pred             cE----EEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHh
Q psy2343         271 DT----IIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQ  340 (396)
Q Consensus       271 D~----VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~  340 (396)
                      |.    ||+|+|++|+..++.. .+..+ ++.+.+.. .+.++.|+||++||+... ...+..|..||+.+|..+.
T Consensus       232 D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~-~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~  305 (555)
T TIGR03143       232 DAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNE-DMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE  305 (555)
T ss_pred             cccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCC-ccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence            66    9999999999988765 34444 35565544 457889999999998642 2345567888888887664

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12831 putative oxidoreductase; Provisional

Probab=99.86  E-value=6.3e-21  Score=187.36  Aligned_cols=242  Identities=17%  Similarity=0.148  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC-cEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM  126 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g-~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~  126 (396)
                      +++.++..++++++++.  +++++.|..        .++.++. +...||+||||||+. .|+.|++|| ...| ++++.
T Consensus       191 ~~~~~~~~~~~~~~gv~--i~~~~~v~~--------~v~~~~~~~~~~~d~viiAtGa~-~~~~l~ipG~~~~g-V~~~~  258 (464)
T PRK12831        191 ETVVKKEIENIKKLGVK--IETNVVVGK--------TVTIDELLEEEGFDAVFIGSGAG-LPKFMGIPGENLNG-VFSAN  258 (464)
T ss_pred             cHHHHHHHHHHHHcCCE--EEcCCEECC--------cCCHHHHHhccCCCEEEEeCCCC-CCCCCCCCCcCCcC-cEEHH
Confidence            45778888888888987  888886621        2333332 224699999999983 578888888 4333 33332


Q ss_pred             cC----------C---CCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccc
Q psy2343         127 DY----------K---SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF  193 (396)
Q Consensus       127 ~~----------~---~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~  193 (396)
                      ++          .   +.....+|+|+|||+|++|+|+|..+.+.+.+|+++.|+....+|..                .
T Consensus       259 ~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~----------------~  322 (464)
T PRK12831        259 EFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPAR----------------V  322 (464)
T ss_pred             HHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCC----------------H
Confidence            22          1   11235789999999999999999999999888999999763222211                0


Q ss_pred             cChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc--cCCCeEe-cC-Cc--ceEeCCe---EEecC
Q psy2343         194 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDILP-KD-DI--KNLNGNI---VHFVD  264 (396)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i--~~g~i~~-~~-~i--~~i~~~~---v~~~d  264 (396)
                      .      .+ ....        ..|+.          ...+....+.+  ..|+++- .- .+  ...+.++   -...+
T Consensus       323 ~------e~-~~a~--------~eGV~----------i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~  377 (464)
T PRK12831        323 E------EV-HHAK--------EEGVI----------FDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIE  377 (464)
T ss_pred             H------HH-HHHH--------HcCCE----------EEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecC
Confidence            0      00 0000        00110          00000000111  0112210 00 00  0000000   01113


Q ss_pred             Cc--EecCcEEEEccCCCCCCCCCCc-cccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHh
Q psy2343         265 DT--HIEVDTIIYATGYNRHFPFIDK-EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQ  340 (396)
Q Consensus       265 G~--~~~~D~VI~aTG~~~~~~~l~~-~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~  340 (396)
                      |+  .+++|.||+|+|+.++..++.. ..+..+ ++.+.+....+.|+.|+||++||+..+...+..|..+|+.+|..+.
T Consensus       378 g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~  457 (464)
T PRK12831        378 GSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAID  457 (464)
T ss_pred             CceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence            33  4899999999999999887765 345543 3556666555789999999999998766677889999999998887


Q ss_pred             ccc
Q psy2343         341 AFI  343 (396)
Q Consensus       341 ~~~  343 (396)
                      ..+
T Consensus       458 ~~L  460 (464)
T PRK12831        458 EYL  460 (464)
T ss_pred             HHh
Confidence            654

>PRK06116 glutathione reductase; Validated

Probab=99.86  E-value=1.8e-20  Score=184.43  Aligned_cols=220  Identities=18%  Similarity=0.145  Sum_probs=148.4

Q ss_pred             HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCC
Q psy2343          55 LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQI  134 (396)
Q Consensus        55 l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~  134 (396)
                      ++...++.++.  +..+ +++.++    ..+|++ +++++.||+||||||.  .|+.|++||..  .++++.++.... .
T Consensus        99 ~~~~l~~~gv~--~~~g-~~~~v~----~~~v~~-~g~~~~~d~lViATGs--~p~~p~i~g~~--~~~~~~~~~~~~-~  165 (450)
T PRK06116         99 YRNGLENNGVD--LIEG-FARFVD----AHTVEV-NGERYTADHILIATGG--RPSIPDIPGAE--YGITSDGFFALE-E  165 (450)
T ss_pred             HHHHHHhCCCE--EEEE-EEEEcc----CCEEEE-CCEEEEeCEEEEecCC--CCCCCCCCCcc--eeEchhHhhCcc-c
Confidence            33334445554  4333 344443    235666 6667999999999998  89999998821  234444333222 2


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG  214 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  214 (396)
                      .+++|+|||+|.+|+|+|..+++.+.+|+++.|++.. ++..    ..                  .+..          
T Consensus       166 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~~----~~------------------~~~~----------  212 (450)
T PRK06116        166 LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP-LRGF----DP------------------DIRE----------  212 (450)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC-cccc----CH------------------HHHH----------
Confidence            4689999999999999999999999999999987632 1110    00                  1111          


Q ss_pred             CCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--C---eEEecCCcEecCcEEEEccCCCCCCCCC-
Q psy2343         215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--N---IVHFVDDTHIEVDTIIYATGYNRHFPFI-  286 (396)
Q Consensus       215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~---~v~~~dG~~~~~D~VI~aTG~~~~~~~l-  286 (396)
                                           .+.+.+.+..|++  ...|.+++.  +   .|.+.+|+++++|.||+|+|++|+..+| 
T Consensus       213 ---------------------~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~  271 (450)
T PRK06116        213 ---------------------TLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLG  271 (450)
T ss_pred             ---------------------HHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCC
Confidence                                 1112222223443  345666642  2   3667789889999999999999998854 


Q ss_pred             -Cccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         287 -DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       287 -~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                       +...+..+ ++.+.+.++ +.++.|+||++||+.......+.|..||+.+|.++.|.
T Consensus       272 l~~~g~~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~  328 (450)
T PRK06116        272 LENAGVKLNEKGYIIVDEY-QNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNN  328 (450)
T ss_pred             chhcCceECCCCcEecCCC-CCcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCC
Confidence             44445554 345666655 46899999999999765667889999999999999874

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.86  E-value=2.5e-20  Score=183.00  Aligned_cols=226  Identities=13%  Similarity=0.087  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccC
Q psy2343          50 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDY  128 (396)
Q Consensus        50 ~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~  128 (396)
                      ++.++++..+++.+++  +..+ +|..++.  +...|. .+|+++.||+||||||+  .|..|++|| ..   .+.+.+.
T Consensus        91 ~~~~~~~~~l~~~gV~--~~~g-~~~~v~~--~~v~v~-~~g~~~~~d~lIiATGs--~p~~p~i~G~~~---~~~~~~~  159 (446)
T TIGR01424        91 RLSGLYKRLLANAGVE--LLEG-RARLVGP--NTVEVL-QDGTTYTAKKILIAVGG--RPQKPNLPGHEL---GITSNEA  159 (446)
T ss_pred             HHHHHHHHHHHhCCcE--EEEE-EEEEecC--CEEEEe-cCCeEEEcCEEEEecCC--cCCCCCCCCccc---eechHHh
Confidence            4556666777777765  4433 6666653  344443 35667899999999998  899999998 32   1222222


Q ss_pred             CCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHH
Q psy2343         129 KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFK  208 (396)
Q Consensus       129 ~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  208 (396)
                      ... ...+|+|+|||+|.+|+|+|..+++.+.+|+++.+.+.. +|.    .+.                  .+...   
T Consensus       160 ~~l-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~-l~~----~d~------------------~~~~~---  212 (446)
T TIGR01424       160 FHL-PTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI-LRG----FDD------------------DMRAL---  212 (446)
T ss_pred             hcc-cccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC-Ccc----cCH------------------HHHHH---
Confidence            211 124789999999999999999999999999999987531 111    000                  11111   


Q ss_pred             HhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--C--eEEecCCcEecCcEEEEccCCCCC
Q psy2343         209 LAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--N--IVHFVDDTHIEVDTIIYATGYNRH  282 (396)
Q Consensus       209 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~--~v~~~dG~~~~~D~VI~aTG~~~~  282 (396)
                                                  +.+.+.+..|++  ...+.+++.  +  .|.+.+|+.+++|.||+|||++|+
T Consensus       213 ----------------------------l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn  264 (446)
T TIGR01424       213 ----------------------------LARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPN  264 (446)
T ss_pred             ----------------------------HHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence                                        111122223333  334556642  2  356678888999999999999999


Q ss_pred             CCCC--CcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         283 FPFI--DKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       283 ~~~l--~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      ...|  +...++.+. +.+.+.+. +.++.|+||++||+.......+.|..||+.+|.++.+.
T Consensus       265 ~~~l~l~~~g~~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~  326 (446)
T TIGR01424       265 TKGLGLEAAGVELNDAGAIAVDEY-SRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGN  326 (446)
T ss_pred             CCcCCccccCeEECCCCcEEeCCC-CccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcC
Confidence            8753  444455443 44666555 47899999999999876677889999999999999874

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07846 mycothione reductase; Reviewed

Probab=99.86  E-value=2.3e-20  Score=183.18  Aligned_cols=276  Identities=11%  Similarity=0.071  Sum_probs=170.9

Q ss_pred             CCccccccCCCCCCCCCCceeeecCCCcccc----CCCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-CceE----eCcE
Q psy2343           3 SDLGGVWNSQASCGRVYPSLHLISPKFNTQV----PDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVY-NHSI----FNTE   73 (396)
Q Consensus         3 ~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~----~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~~l~-~~i~----~~t~   73 (396)
                      +.+||++-+.    .|-|+-.+..++.....    +.|-.....+ -....++.++.+...+++.-. ....    .+.+
T Consensus        31 ~~~GGtC~n~----GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  105 (451)
T PRK07846         31 GTFGGTCLNV----GCIPTKMFVYAADVARTIREAARLGVDAELD-GVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNID  105 (451)
T ss_pred             CCCCCcccCc----CcchhHHHHHHHHHHHHHHHHHhCCccCCCC-cCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcE
Confidence            4689998776    36665543333332211    1111110111 235667777777776664211 0011    1222


Q ss_pred             EEEEEE-eCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHH
Q psy2343          74 VINLEQ-YEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIA  152 (396)
Q Consensus        74 V~~v~~-~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a  152 (396)
                      |..=+- -.+..+|++.+|+++.||+||||||+  .|..|+++|...-.+.++.+.... ...+|+|+|||+|.+|+|+|
T Consensus       106 ~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs--~p~~p~i~g~~~~~~~~~~~~~~l-~~~~~~vvIIGgG~iG~E~A  182 (451)
T PRK07846        106 VYRGHARFIGPKTLRTGDGEEITADQVVIAAGS--RPVIPPVIADSGVRYHTSDTIMRL-PELPESLVIVGGGFIAAEFA  182 (451)
T ss_pred             EEEEEEEEecCCEEEECCCCEEEeCEEEEcCCC--CCCCCCCCCcCCccEEchHHHhhh-hhcCCeEEEECCCHHHHHHH
Confidence            222110 02344677777777999999999998  899999988211122233222221 23468999999999999999


Q ss_pred             HHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCc
Q psy2343         153 VDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPI  232 (396)
Q Consensus       153 ~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  232 (396)
                      ..+++.+.+|+++.|++... |..    +.                  .+...+                          
T Consensus       183 ~~l~~~G~~Vtli~~~~~ll-~~~----d~------------------~~~~~l--------------------------  213 (451)
T PRK07846        183 HVFSALGVRVTVVNRSGRLL-RHL----DD------------------DISERF--------------------------  213 (451)
T ss_pred             HHHHHcCCeEEEEEcCCccc-ccc----CH------------------HHHHHH--------------------------
Confidence            99999999999999976321 110    00                  111110                          


Q ss_pred             cCchhhhcccCCCeEe--cCCcceEeCC----eEEecCCcEecCcEEEEccCCCCCCCCCC--ccccccc-CCccccccc
Q psy2343         233 MNSQILYHIGHGDILP--KDDIKNLNGN----IVHFVDDTHIEVDTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIH  303 (396)
Q Consensus       233 ~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~~~dG~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~-~~~~~l~~~  303 (396)
                           .+.+.. +|++  ...+++++++    .|.+.+|+.+++|.||+|||++|+.+++.  ...++.+ ++.+.+.++
T Consensus       214 -----~~l~~~-~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~  287 (451)
T PRK07846        214 -----TELASK-RWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEY  287 (451)
T ss_pred             -----HHHHhc-CeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCC
Confidence                 111111 2333  3456666432    35667888999999999999999999864  3345553 355666655


Q ss_pred             cccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         304 IAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       304 ~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                       +.++.|+||++||+.....+.+.|..||+.+|.++.+.
T Consensus       288 -~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~  325 (451)
T PRK07846        288 -QRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP  325 (451)
T ss_pred             -cccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence             46899999999999876667789999999999999864

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.86  E-value=3.6e-20  Score=182.78  Aligned_cols=228  Identities=15%  Similarity=0.125  Sum_probs=152.8

Q ss_pred             HHHHHHHHcCCCCceEeCcEEEEEE--EeCCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCC
Q psy2343          54 YLRSYAKKFDVYNHSIFNTEVINLE--QYEDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYK  129 (396)
Q Consensus        54 Yl~~~~~~~~l~~~i~~~t~V~~v~--~~~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~  129 (396)
                      +++..+++++++  +..+ ++..++  .+.+...|++.+|+  ++.||+||||||+  .|..|+.++.....++++.+..
T Consensus        97 ~~~~~l~~~gV~--~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs--~p~~~p~~~~~~~~v~~~~~~~  171 (466)
T PRK07845         97 DIRARLEREGVR--VIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGA--SPRILPTAEPDGERILTWRQLY  171 (466)
T ss_pred             HHHHHHHHCCCE--EEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCC--CCCCCCCCCCCCceEEeehhhh
Confidence            344445555654  4333 455544  33566777776765  6899999999999  7876655442222355555544


Q ss_pred             CCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHH
Q psy2343         130 SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKL  209 (396)
Q Consensus       130 ~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  209 (396)
                      +... .+++|+|||+|.+|+|+|..|++.+.+|+++.+.+. ++|..    ..                  .+.      
T Consensus       172 ~~~~-~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~-~l~~~----d~------------------~~~------  221 (466)
T PRK07845        172 DLDE-LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR-VLPGE----DA------------------DAA------  221 (466)
T ss_pred             cccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc-CCCCC----CH------------------HHH------
Confidence            4322 368999999999999999999999999999998753 11211    00                  000      


Q ss_pred             hcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEe--CCe--EEecCCcEecCcEEEEccCCCCCC
Q psy2343         210 AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLN--GNI--VHFVDDTHIEVDTIIYATGYNRHF  283 (396)
Q Consensus       210 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~--~~~--v~~~dG~~~~~D~VI~aTG~~~~~  283 (396)
                                               ..+.+.+....|++  ...+.+++  +++  +.+.+|+++++|.||+|+|++|+.
T Consensus       222 -------------------------~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~  276 (466)
T PRK07845        222 -------------------------EVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT  276 (466)
T ss_pred             -------------------------HHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence                                     11111222223443  23456663  233  566789899999999999999998


Q ss_pred             CC--CCcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         284 PF--IDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       284 ~~--l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      ..  ++...++.+. +.+.+.+. +.++.|+||++||+.....+.+.|..||+.++..+.+.
T Consensus       277 ~~l~l~~~gl~~~~~G~i~Vd~~-~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~  337 (466)
T PRK07845        277 AGLGLEEAGVELTPSGHITVDRV-SRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGE  337 (466)
T ss_pred             CCCCchhhCceECCCCcEeECCC-cccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCC
Confidence            76  4444555543 55666654 46899999999999876677889999999999998874

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.85  E-value=6.3e-21  Score=182.80  Aligned_cols=234  Identities=18%  Similarity=0.219  Sum_probs=158.0

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecc
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSM  126 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~  126 (396)
                      +.+++...+++++++++++  +.. .+|++|+.+++  +|.+++|+++.||+||||||+  .|..|.+||.-. .++...
T Consensus        52 ~~~~~~~~~~~~~~~~gv~--~~~-~~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~--~~~~~~i~g~~~-~~~~~~  123 (364)
T TIGR03169        52 SLDEIRIDLRRLARQAGAR--FVI-AEATGIDPDRR--KVLLANRPPLSYDVLSLDVGS--TTPLSGVEGAAD-LAVPVK  123 (364)
T ss_pred             CHHHhcccHHHHHHhcCCE--EEE-EEEEEEecccC--EEEECCCCcccccEEEEccCC--CCCCCCCCcccc-cccccC
Confidence            3467777888888888876  444 58999988655  688888888999999999999  888998888111 111100


Q ss_pred             c----------CCCCC--CCCCCeEEEEcCCCcHHHHHHHHhcC------CCcEEEEeccCceeecCCCCCCChhHHHHh
Q psy2343         127 D----------YKSPD--QIRNKRVLVVGAGNSGCDIAVDASHH------SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQ  188 (396)
Q Consensus       127 ~----------~~~~~--~~~~k~VvVVG~G~sa~d~a~~l~~~------~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~  188 (396)
                      .          +....  ...+|+|+|||+|.+|+|+|.+|++.      ..+|+++ +.+. +++..    +       
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~-~l~~~----~-------  190 (364)
T TIGR03169       124 PIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGAS-LLPGF----P-------  190 (364)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCc-ccccC----C-------
Confidence            0          10100  12468999999999999999999853      2478888 3321 11110    0       


Q ss_pred             hCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCeEEecCCc
Q psy2343         189 LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNIVHFVDDT  266 (396)
Q Consensus       189 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~v~~~dG~  266 (396)
                        .         .+                               ...+.+.+.+..|++  ...+++++++.|.+.+|.
T Consensus       191 --~---------~~-------------------------------~~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g~  228 (364)
T TIGR03169       191 --A---------KV-------------------------------RRLVLRLLARRGIEVHEGAPVTRGPDGALILADGR  228 (364)
T ss_pred             --H---------HH-------------------------------HHHHHHHHHHCCCEEEeCCeeEEEcCCeEEeCCCC
Confidence              0         00                               011112222234554  346778877789999999


Q ss_pred             EecCcEEEEccCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEecccCc-----CchhhHHHHHHHHHHHHHh
Q psy2343         267 HIEVDTIIYATGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA-----AGLGDGLRLQGQFIRSYIQ  340 (396)
Q Consensus       267 ~~~~D~VI~aTG~~~~~~~l~~~~~~~-~~~~~~l~~~~~~~~~p~l~~iG~~~~~-----~~~~~~ae~qa~~~a~~l~  340 (396)
                      ++++|.||+|+|.+++ +++....+.. +++.+.+...+..+++|+||++||+...     ......|..||+.+|++|.
T Consensus       229 ~i~~D~vi~a~G~~p~-~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~  307 (364)
T TIGR03169       229 TLPADAILWATGARAP-PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLR  307 (364)
T ss_pred             EEecCEEEEccCCChh-hHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHH
Confidence            9999999999999987 5555444444 3456666665544589999999999742     1244568999999999887


Q ss_pred             cccc
Q psy2343         341 AFIR  344 (396)
Q Consensus       341 ~~~~  344 (396)
                      ..+.
T Consensus       308 ~~l~  311 (364)
T TIGR03169       308 ASLR  311 (364)
T ss_pred             HHhc
Confidence            6654

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.85  E-value=1.7e-20  Score=185.28  Aligned_cols=271  Identities=19%  Similarity=0.182  Sum_probs=164.7

Q ss_pred             CCccccccCCCCCCCCCCceeeecCCCc----cccCCCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCce-E--e-CcEE
Q psy2343           3 SDLGGVWNSQASCGRVYPSLHLISPKFN----TQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHS-I--F-NTEV   74 (396)
Q Consensus         3 ~~iGG~W~~~~~~~~~y~~~~~~~~~~~----~~~~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i-~--~-~t~V   74 (396)
                      +.+||+|.+.    .|+|+-.+..++..    ..++.|..+.. ....+.+++.++++.+++++.-.  + .  + ...|
T Consensus        35 ~~~GG~~~~~----gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v  107 (460)
T PRK06292         35 GPLGGTCLNV----GCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKIDFKKVMARVRRERDRFVGG--VVEGLEKKPKI  107 (460)
T ss_pred             Cccccceecc----ceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccCHHHHHHHHHHHHHHHhcc--hHHHHHhhCCC
Confidence            5689999865    25654332222211    11223322211 13567889999999988876422  2 1  1 1112


Q ss_pred             EEEEE---eCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCC--ccc-ceeecccCCCCCCCCCCeEEEEcCCCcH
Q psy2343          75 INLEQ---YEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY--FSG-EILHSMDYKSPDQIRNKRVLVVGAGNSG  148 (396)
Q Consensus        75 ~~v~~---~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~--~~g-~~~hs~~~~~~~~~~~k~VvVVG~G~sa  148 (396)
                      .-+..   ..+.+.|.+ +++++.||+||||||.  .  .|.+||.  ..+ .++++.+... ....+|+|+|||+|.+|
T Consensus       108 ~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs--~--~p~ipg~~~~~~~~~~~~~~~~~-~~~~~k~v~VIGgG~~g  181 (460)
T PRK06292        108 DKIKGTARFVDPNTVEV-NGERIEAKNIVIATGS--R--VPPIPGVWLILGDRLLTSDDAFE-LDKLPKSLAVIGGGVIG  181 (460)
T ss_pred             EEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCC--C--CCCCCCCcccCCCcEECchHHhC-ccccCCeEEEECCCHHH
Confidence            21211   122234555 5667999999999999  4  4455551  122 3334333221 13357899999999999


Q ss_pred             HHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCc
Q psy2343         149 CDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDA  228 (396)
Q Consensus       149 ~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  228 (396)
                      +|+|..+++.+.+|+++.|.+.. +|..    .         .         .+..                        
T Consensus       182 ~E~A~~l~~~g~~Vtli~~~~~~-l~~~----d---------~---------~~~~------------------------  214 (460)
T PRK06292        182 LELGQALSRLGVKVTVFERGDRI-LPLE----D---------P---------EVSK------------------------  214 (460)
T ss_pred             HHHHHHHHHcCCcEEEEecCCCc-Ccch----h---------H---------HHHH------------------------
Confidence            99999999999999999987632 1110    0         0         1111                        


Q ss_pred             ccCccCchhhhcccCCCeEe--cCCcceEeCC---eEEe--cCC--cEecCcEEEEccCCCCCCCCC--Cccccccc-CC
Q psy2343         229 AHPIMNSQILYHIGHGDILP--KDDIKNLNGN---IVHF--VDD--THIEVDTIIYATGYNRHFPFI--DKEKLEWK-LG  296 (396)
Q Consensus       229 ~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~---~v~~--~dG--~~~~~D~VI~aTG~~~~~~~l--~~~~~~~~-~~  296 (396)
                             .+.+.+... |++  ...+.+++..   .+.+  .+|  +++++|.||+|+|.+|+.++|  +...+..+ ++
T Consensus       215 -------~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g  286 (460)
T PRK06292        215 -------QAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERG  286 (460)
T ss_pred             -------HHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCC
Confidence                   111122222 333  3455666432   3443  344  458999999999999998854  34445443 34


Q ss_pred             ccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         297 IPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       297 ~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      .+.+.+. +.++.|+||++||+.......+.|..||+.+|.++.+.
T Consensus       287 ~i~vd~~-~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~  331 (460)
T PRK06292        287 RPVVDEH-TQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD  331 (460)
T ss_pred             cEeECCC-cccCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence            4555555 46799999999999876667789999999999999874

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.85  E-value=2.8e-20  Score=182.43  Aligned_cols=225  Identities=20%  Similarity=0.152  Sum_probs=144.3

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM  126 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~  126 (396)
                      ..++.+.....+++.++.  +++++.|.        ..|++++.. ..||+||||||+. .|+.|.+|| ...| ++++.
T Consensus       182 ~~~~~~~~~~~l~~~gv~--~~~~~~v~--------~~v~~~~~~-~~yd~viiAtGa~-~p~~~~ipG~~~~g-v~~~~  248 (449)
T TIGR01316       182 PKEIVVTEIKTLKKLGVT--FRMNFLVG--------KTATLEELF-SQYDAVFIGTGAG-LPKLMNIPGEELCG-VYSAN  248 (449)
T ss_pred             CHHHHHHHHHHHHhCCcE--EEeCCccC--------CcCCHHHHH-hhCCEEEEeCCCC-CCCcCCCCCCCCCC-cEEHH
Confidence            356667776777778876  77776541        134443332 4699999999973 588888888 5444 34433


Q ss_pred             cCC--------------CCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCcc
Q psy2343         127 DYK--------------SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNK  192 (396)
Q Consensus       127 ~~~--------------~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~  192 (396)
                      ++.              ......||+|+|||+|++|+|+|..+++.+.+|+++.|++...+|..                
T Consensus       249 ~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~----------------  312 (449)
T TIGR01316       249 DFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTAR----------------  312 (449)
T ss_pred             HHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCC----------------
Confidence            221              11134689999999999999999999999989999999863222111                


Q ss_pred             ccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEeC---C---eEEec---
Q psy2343         193 FSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG---N---IVHFV---  263 (396)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~---~---~v~~~---  263 (396)
                        .     ...+.+.        ..|+                         ++.....+.++.+   +   +|.+.   
T Consensus       313 --~-----~~~~~l~--------~~GV-------------------------~~~~~~~~~~i~~~~~g~v~~v~~~~~~  352 (449)
T TIGR01316       313 --V-----EEIAHAE--------EEGV-------------------------KFHFLCQPVEIIGDEEGNVRAVKFRKMD  352 (449)
T ss_pred             --H-----HHHHHHH--------hCCC-------------------------EEEeccCcEEEEEcCCCeEEEEEEEEEE
Confidence              0     0001100        0011                         1111112222211   0   11221   


Q ss_pred             ------CC-----------cEecCcEEEEccCCCCCCCCCCcccccccC-CccccccccccCCCCcEEEEecccCcCchh
Q psy2343         264 ------DD-----------THIEVDTIIYATGYNRHFPFIDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLG  325 (396)
Q Consensus       264 ------dG-----------~~~~~D~VI~aTG~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~  325 (396)
                            +|           ..+++|.||+|+|+.++..+++...+..+. +.+.+.. .+.++.|+||++||+......+
T Consensus       353 ~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~-~~~Ts~~~VfA~GD~~~g~~~v  431 (449)
T TIGR01316       353 CQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDE-DQRTSIPGVFAGGDIILGAATV  431 (449)
T ss_pred             ecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCC-CCccCCCCEEEecCCCCCcHHH
Confidence                  12           258999999999999998887765555543 4455544 4578899999999998666677


Q ss_pred             hHHHHHHHHHHHHHhcc
Q psy2343         326 DGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       326 ~~ae~qa~~~a~~l~~~  342 (396)
                      ..|..||+.+|..+...
T Consensus       432 ~~Ai~~G~~AA~~I~~~  448 (449)
T TIGR01316       432 IRAMGQGKRAAKSINEY  448 (449)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            89999999999988653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK13748 putative mercuric reductase; Provisional

Probab=99.85  E-value=4e-20  Score=187.14  Aligned_cols=273  Identities=14%  Similarity=0.109  Sum_probs=164.8

Q ss_pred             CCccccccCCCCCCCCCCceeeecCCCccc-cCCCCC----CCCCCCCCChHHHHHHHHHHHHHcCC-------CC--ce
Q psy2343           3 SDLGGVWNSQASCGRVYPSLHLISPKFNTQ-VPDYPM----PDNYPVYPNHSMMLDYLRSYAKKFDV-------YN--HS   68 (396)
Q Consensus         3 ~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~-~~~~p~----p~~~~~~p~~~~~~~Yl~~~~~~~~l-------~~--~i   68 (396)
                      +.+||+|.+.    .|+|+-.+..+..... ....++    +...+ -...+.+.++.+...+.+.-       ..  .|
T Consensus       130 ~~~GG~c~n~----gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  204 (561)
T PRK13748        130 GTIGGTCVNV----GCVPSKIMIRAAHIAHLRRESPFDGGIAATVP-TIDRSRLLAQQQARVDELRHAKYEGILDGNPAI  204 (561)
T ss_pred             Ccceeecccc----CccccHHHHHHHHHHHHHhcccccCCccCCCC-ccCHHHHHHHHHHHHHHHhcccHHHHHhccCCe
Confidence            3789999876    3777655433332211 111121    11111 12455666665555443211       00  11


Q ss_pred             Ee-CcEEEEEEEeCCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCC
Q psy2343          69 IF-NTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAG  145 (396)
Q Consensus        69 ~~-~t~V~~v~~~~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G  145 (396)
                      .+ ..++..++  .+.+.|++.+|.  ++.||+||||||+  .|.+|++||.....++++.+... ....+|+|+|||+|
T Consensus       205 ~~~~g~~~~~~--~~~~~v~~~~g~~~~~~~d~lviAtGs--~p~~p~i~g~~~~~~~~~~~~~~-~~~~~~~vvViGgG  279 (561)
T PRK13748        205 TVLHGEARFKD--DQTLIVRLNDGGERVVAFDRCLIATGA--SPAVPPIPGLKETPYWTSTEALV-SDTIPERLAVIGSS  279 (561)
T ss_pred             EEEEEEEEEec--CCEEEEEeCCCceEEEEcCEEEEcCCC--CCCCCCCCCCCccceEccHHHhh-cccCCCeEEEECCC
Confidence            11 22232222  556778776653  5899999999999  89999999821112233322111 12346899999999


Q ss_pred             CcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy2343         146 NSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHP  225 (396)
Q Consensus       146 ~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  225 (396)
                      .+|+|+|..+++.+.+|+++.|..  .+|..    ..                  .+.+.                    
T Consensus       280 ~ig~E~A~~l~~~g~~Vtli~~~~--~l~~~----d~------------------~~~~~--------------------  315 (561)
T PRK13748        280 VVALELAQAFARLGSKVTILARST--LFFRE----DP------------------AIGEA--------------------  315 (561)
T ss_pred             HHHHHHHHHHHHcCCEEEEEecCc--ccccc----CH------------------HHHHH--------------------
Confidence            999999999999999999999853  22211    00                  11111                    


Q ss_pred             CCcccCccCchhhhcccCCCeEe--cCCcceEeC--CeE--EecCCcEecCcEEEEccCCCCCCCCC--CcccccccC-C
Q psy2343         226 LDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NIV--HFVDDTHIEVDTIIYATGYNRHFPFI--DKEKLEWKL-G  296 (396)
Q Consensus       226 ~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~v--~~~dG~~~~~D~VI~aTG~~~~~~~l--~~~~~~~~~-~  296 (396)
                                 +.+.+....|++  ...+++++.  +.+  .+.++ .+++|.||+|+|++|+..++  +...++.+. +
T Consensus       316 -----------l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g  383 (561)
T PRK13748        316 -----------VTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQG  383 (561)
T ss_pred             -----------HHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCC
Confidence                       111111223333  334555542  233  33344 68999999999999998764  444555543 4


Q ss_pred             ccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         297 IPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       297 ~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      .+.+.+. +.++.|+||++||+.......+.|..||+.+|..+.|.
T Consensus       384 ~i~vd~~-~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~  428 (561)
T PRK13748        384 AIVIDQG-MRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG  428 (561)
T ss_pred             CEeECCC-cccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence            5666554 47899999999999866667788999999999999764

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.85  E-value=2.4e-20  Score=179.89  Aligned_cols=275  Identities=19%  Similarity=0.203  Sum_probs=174.7

Q ss_pred             CccccccCCCCCCCCCCceeeecCCCccccCC-----CCCCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCc-EEEEE
Q psy2343           4 DLGGVWNSQASCGRVYPSLHLISPKFNTQVPD-----YPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNT-EVINL   77 (396)
Q Consensus         4 ~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~-----~p~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t-~V~~v   77 (396)
                      .+||++.+.    .|-|+-.+..++..+....     |-.....+ -...+++.+..+...+...-.-.-.+.. .|+-+
T Consensus        38 ~lGGtCln~----GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~-~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi  112 (454)
T COG1249          38 RLGGTCLNV----GCIPSKALLHAAEVIEEARHAAKEYGISAEVP-KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVI  112 (454)
T ss_pred             CcCceEEee----CccccHHHHHHHHHHHHHhhcccccceecCCC-CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEE
Confidence            689999876    4888877766666542111     11111111 1233444444444322221100000111 22222


Q ss_pred             EEe---CCeEEEEEcc--CcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHH
Q psy2343          78 EQY---EDIWEVELSN--GKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIA  152 (396)
Q Consensus        78 ~~~---~~~~~V~~~~--g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a  152 (396)
                      .-.   .+..+|.+.+  .++++++++|||||+  +|..|+++|-....++.+.+..... .-.|+++|||||..|+|+|
T Consensus       113 ~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS--~p~~~~~~~~~~~~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a  189 (454)
T COG1249         113 RGEARFVDPHTVEVTGEDKETITADNIIIATGS--RPRIPPGPGIDGARILDSSDALFLL-ELPKSLVIVGGGYIGLEFA  189 (454)
T ss_pred             EEEEEECCCCEEEEcCCCceEEEeCEEEEcCCC--CCcCCCCCCCCCCeEEechhhcccc-cCCCEEEEECCCHHHHHHH
Confidence            211   1223444443  367999999999999  9999988872222355555533333 3468999999999999999


Q ss_pred             HHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCc
Q psy2343         153 VDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPI  232 (396)
Q Consensus       153 ~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  232 (396)
                      ..+++.+.+||++.|.+.. +|..    .                                                 +.
T Consensus       190 ~~~~~LG~~VTiie~~~~i-Lp~~----D-------------------------------------------------~e  215 (454)
T COG1249         190 SVFAALGSKVTVVERGDRI-LPGE----D-------------------------------------------------PE  215 (454)
T ss_pred             HHHHHcCCcEEEEecCCCC-CCcC----C-------------------------------------------------HH
Confidence            9999999999999998742 2211    0                                                 11


Q ss_pred             cCchhhhcccCCCeEe--cCCcceEeCC----eEEecCCc--EecCcEEEEccCCCCCCCC--CCcccccccC-Cccccc
Q psy2343         233 MNSQILYHIGHGDILP--KDDIKNLNGN----IVHFVDDT--HIEVDTIIYATGYNRHFPF--IDKEKLEWKL-GIPDLF  301 (396)
Q Consensus       233 ~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~~~dG~--~~~~D~VI~aTG~~~~~~~--l~~~~~~~~~-~~~~l~  301 (396)
                      +++.+...+.++.+++  ...+++++.+    .+.+++|.  .+++|.|++|||.+|+.+-  |+..+++.++ +.+.+.
T Consensus       216 i~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD  295 (454)
T COG1249         216 ISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD  295 (454)
T ss_pred             HHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC
Confidence            1222233333334443  3456666532    36777877  6889999999999999883  5555666655 567777


Q ss_pred             cccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhc
Q psy2343         302 IHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA  341 (396)
Q Consensus       302 ~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~  341 (396)
                       ..+.+++|+||++||+.....+.+.|..|++.+|.++.|
T Consensus       296 -~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g  334 (454)
T COG1249         296 -DQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG  334 (454)
T ss_pred             -CccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence             777888999999999976666889999999999999997

>TIGR02053 MerA mercuric reductase

Probab=99.84  E-value=1.4e-20  Score=185.84  Aligned_cols=200  Identities=16%  Similarity=0.138  Sum_probs=135.9

Q ss_pred             EEEEEccCc-EEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCc
Q psy2343          84 WEVELSNGK-KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEK  161 (396)
Q Consensus        84 ~~V~~~~g~-~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~  161 (396)
                      .+|++.++. .+.||+||||||.  .|..|++|| ... .++++.+...... ..++|+|||+|.+|+|+|..+++.+.+
T Consensus       116 ~~v~v~~g~~~~~~~~lIiATGs--~p~~p~i~G~~~~-~~~~~~~~~~~~~-~~~~vvIIGgG~~g~E~A~~l~~~g~~  191 (463)
T TIGR02053       116 KTVKVDLGREVRGAKRFLIATGA--RPAIPPIPGLKEA-GYLTSEEALALDR-IPESLAVIGGGAIGVELAQAFARLGSE  191 (463)
T ss_pred             CEEEEcCCeEEEEeCEEEEcCCC--CCCCCCCCCcccC-ceECchhhhCccc-CCCeEEEECCCHHHHHHHHHHHHcCCc
Confidence            466666653 5789999999998  899999998 322 2455544433222 358999999999999999999999999


Q ss_pred             EEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc
Q psy2343         162 VYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI  241 (396)
Q Consensus       162 V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i  241 (396)
                      |+++.|.+. ++|..    ..                  .+...                               +.+.+
T Consensus       192 Vtli~~~~~-~l~~~----d~------------------~~~~~-------------------------------l~~~l  217 (463)
T TIGR02053       192 VTILQRSDR-LLPRE----EP------------------EISAA-------------------------------VEEAL  217 (463)
T ss_pred             EEEEEcCCc-CCCcc----CH------------------HHHHH-------------------------------HHHHH
Confidence            999999763 22211    00                  01111                               11111


Q ss_pred             cCCCeEe--cCCcceEeCC----eEEec---CCcEecCcEEEEccCCCCCCCC--CCccccccc-CCccccccccccCCC
Q psy2343         242 GHGDILP--KDDIKNLNGN----IVHFV---DDTHIEVDTIIYATGYNRHFPF--IDKEKLEWK-LGIPDLFIHIAPRNL  309 (396)
Q Consensus       242 ~~g~i~~--~~~i~~i~~~----~v~~~---dG~~~~~D~VI~aTG~~~~~~~--l~~~~~~~~-~~~~~l~~~~~~~~~  309 (396)
                      ....|++  ...|++++.+    .+.+.   ++.++++|.||+|+|.+|+...  ++...++.+ .+.+.+... +.++.
T Consensus       218 ~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~Ts~  296 (463)
T TIGR02053       218 AEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDET-LRTSN  296 (463)
T ss_pred             HHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCC-ccCCC
Confidence            1223333  2345555432    23343   2346999999999999999873  444445543 345666644 47899


Q ss_pred             CcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         310 DNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       310 p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      |+||++||+.....+.+.|..||+.+|.++.+.
T Consensus       297 ~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~  329 (463)
T TIGR02053       297 PGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG  329 (463)
T ss_pred             CCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence            999999999876667789999999999999875

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.84  E-value=1.4e-21  Score=183.73  Aligned_cols=124  Identities=27%  Similarity=0.438  Sum_probs=92.2

Q ss_pred             CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC----CeEEEEEc----cCcEEEcCEEEEcccCCCCCCCCCCC
Q psy2343          44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE----DIWEVELS----NGKKKKYDFIAVCNGAQRVARYPNYS  115 (396)
Q Consensus        44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~----~~~~V~~~----~g~~~~~d~vvvAtG~~~~p~~P~~~  115 (396)
                      .+|++.|+.+|++|.+++++..  ++|+++|++|+++.    ..|+|++.    ++.++.++.||||||.  .|.+|...
T Consensus        90 ~~p~R~ef~dYl~Wva~~~~~~--v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~--~P~iP~~~  165 (341)
T PF13434_consen   90 FFPSRREFNDYLRWVAEQLDNQ--VRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG--QPRIPEWF  165 (341)
T ss_dssp             SS-BHHHHHHHHHHHHCCGTTT--EEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE------EE---GGG
T ss_pred             CCCCHHHHHHHHHHHHHhCCCc--eEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC--CCCCCcch
Confidence            5789999999999999999844  99999999999973    25999984    3456899999999997  89999766


Q ss_pred             CCc--ccceeecccCCCCC--CCCCCeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccCce
Q psy2343         116 GYF--SGEILHSMDYKSPD--QIRNKRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGYH  171 (396)
Q Consensus       116 g~~--~g~~~hs~~~~~~~--~~~~k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~~~  171 (396)
                      ..+  ...++|+++|....  ..++++|+|||||+||+|++..|.+..  .+|++++|++.+
T Consensus       166 ~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~  227 (341)
T PF13434_consen  166 QDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF  227 (341)
T ss_dssp             GGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred             hhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence            533  47899999987653  567899999999999999999999874  489999998743

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.84  E-value=2e-19  Score=164.92  Aligned_cols=282  Identities=17%  Similarity=0.180  Sum_probs=162.6

Q ss_pred             CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe--CCeEE--EEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcc
Q psy2343          44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDIWE--VELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFS  119 (396)
Q Consensus        44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~--~~~~~--V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~  119 (396)
                      .+|++.|+.+|++|.|+++   +.++|+++|++|...  +....  +.+.++.+++++.|||++|.  +|.+|+.--.+.
T Consensus        93 f~i~R~Ey~dY~~Waa~~l---~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~--~P~IP~~f~~l~  167 (436)
T COG3486          93 FHIPRREYNDYCQWAASQL---PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGT--QPYIPPCFRSLI  167 (436)
T ss_pred             ccccHHHHHHHHHHHHhhC---CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCC--CcCCChHHhCcC
Confidence            4689999999999999998   348999999988443  33344  56667778999999999999  999995333333


Q ss_pred             -cceeecccCCCCC-CCCCCe-EEEEcCCCcHHHHHHHHhcC----CCcEEEEeccCceeecCCCCCCChhH-------H
Q psy2343         120 -GEILHSMDYKSPD-QIRNKR-VLVVGAGNSGCDIAVDASHH----SEKVYHSTRRGYHYYPKFIDGKPTPQ-------W  185 (396)
Q Consensus       120 -g~~~hs~~~~~~~-~~~~k~-VvVVG~G~sa~d~a~~l~~~----~~~V~l~~r~~~~~~p~~~~~~~~~~-------~  185 (396)
                       +.++|+++|.... +..+|+ |+|||+|+||+|+..+|...    ..++.|++|+..+. |.....+....       +
T Consensus       168 ~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~-p~d~Skf~~e~F~P~y~dy  246 (436)
T COG3486         168 GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFL-PMDYSKFGLEYFSPEYTDY  246 (436)
T ss_pred             ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCC-ccccchhhhhhcCchhHHH
Confidence             4899999998543 566666 99999999999999998764    33588899987542 21111000110       1


Q ss_pred             HHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccC--CCeEec--CCcceEeCC--e
Q psy2343         186 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH--GDILPK--DDIKNLNGN--I  259 (396)
Q Consensus       186 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~--g~i~~~--~~i~~i~~~--~  259 (396)
                      +..+|..-++     .+..+    .  . ..|.-...    ....-+....+.+.+..  ..+.+.  +++++++..  +
T Consensus       247 fy~l~~~~r~-----~ll~~----~--~-~~YkgI~~----~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g  310 (436)
T COG3486         247 FYGLPPEARD-----ELLRK----Q--R-LLYKGISF----DTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDG  310 (436)
T ss_pred             HhcCCHHHHH-----HHHhh----c--C-ccccccCH----HHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCc
Confidence            1112221111     11000    0  0 00000000    00000000111111211  133332  356666532  2


Q ss_pred             -EEe-------cCCcEecCcEEEEccCCCCCCC-CCCcc--cccccC-Ccccccccc---c-cCCCCcEEEEecccCc--
Q psy2343         260 -VHF-------VDDTHIEVDTIIYATGYNRHFP-FIDKE--KLEWKL-GIPDLFIHI---A-PRNLDNIFFFGFVNAA--  321 (396)
Q Consensus       260 -v~~-------~dG~~~~~D~VI~aTG~~~~~~-~l~~~--~~~~~~-~~~~l~~~~---~-~~~~p~l~~iG~~~~~--  321 (396)
                       +.+       .+.+++++|+||+||||+...| ||+..  .+.|++ +...+.++.   . .+..-.||+.|.....  
T Consensus       311 ~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHG  390 (436)
T COG3486         311 RYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHG  390 (436)
T ss_pred             eEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccccc
Confidence             333       1224588999999999997777 77642  244543 344332221   1 1222358887765321  


Q ss_pred             --CchhhHHHHHHHHHHHHHhccccCCC
Q psy2343         322 --AGLGDGLRLQGQFIRSYIQAFIRKSK  347 (396)
Q Consensus       322 --~~~~~~ae~qa~~~a~~l~~~~~lp~  347 (396)
                        .+....+-.-|..+++.|.|..+-|.
T Consensus       391 ig~pdLsl~a~Raa~I~~~L~g~~~~~~  418 (436)
T COG3486         391 IGAPDLSLGAWRAAVILNSLLGREKYPV  418 (436)
T ss_pred             cCCccchHHHHHHHHHHHHHhCcCCCCC
Confidence              23455566667777888888877554

>PRK06370 mercuric reductase; Validated

Probab=99.84  E-value=1.6e-19  Score=178.34  Aligned_cols=199  Identities=15%  Similarity=0.097  Sum_probs=135.5

Q ss_pred             EEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEE
Q psy2343          85 EVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYH  164 (396)
Q Consensus        85 ~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l  164 (396)
                      +|++ ++.++.||+||||||+  .|..|++||.....++++.+..+.. ..+|+|+|||+|.+|+|+|..+++.+.+|++
T Consensus       124 ~v~v-~~~~~~~d~lViATGs--~p~~p~i~G~~~~~~~~~~~~~~~~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtl  199 (463)
T PRK06370        124 TVRV-GGETLRAKRIFINTGA--RAAIPPIPGLDEVGYLTNETIFSLD-ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTV  199 (463)
T ss_pred             EEEE-CcEEEEeCEEEEcCCC--CCCCCCCCCCCcCceEcchHhhCcc-ccCCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            4555 3556899999999999  8999999982222345554443322 3478999999999999999999999999999


Q ss_pred             EeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCC
Q psy2343         165 STRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG  244 (396)
Q Consensus       165 ~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g  244 (396)
                      +.|.+.. +|..    ..                  .+..                               .+.+.+...
T Consensus       200 i~~~~~~-l~~~----~~------------------~~~~-------------------------------~l~~~l~~~  225 (463)
T PRK06370        200 IERGPRL-LPRE----DE------------------DVAA-------------------------------AVREILERE  225 (463)
T ss_pred             EEcCCCC-Cccc----CH------------------HHHH-------------------------------HHHHHHHhC
Confidence            9987632 1110    00                  0111                               111112222


Q ss_pred             CeEe--cCCcceEeCC--e--EEec--C-CcEecCcEEEEccCCCCCCCC--CCccccccc-CCccccccccccCCCCcE
Q psy2343         245 DILP--KDDIKNLNGN--I--VHFV--D-DTHIEVDTIIYATGYNRHFPF--IDKEKLEWK-LGIPDLFIHIAPRNLDNI  312 (396)
Q Consensus       245 ~i~~--~~~i~~i~~~--~--v~~~--d-G~~~~~D~VI~aTG~~~~~~~--l~~~~~~~~-~~~~~l~~~~~~~~~p~l  312 (396)
                      .|++  ...+.++++.  +  |.+.  + +..+++|.||+|||.+|+...  ++...+..+ ++.+.+.+. +.++.|+|
T Consensus       226 GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-l~t~~~~I  304 (463)
T PRK06370        226 GIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQ-LRTTNPGI  304 (463)
T ss_pred             CCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcC-CcCCCCCE
Confidence            3443  3456666532  2  3332  3 346999999999999999873  444445543 344666555 57899999


Q ss_pred             EEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         313 FFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       313 ~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      |++||+.........|..||+.+|.++.+.
T Consensus       305 yAiGD~~~~~~~~~~A~~~g~~aa~ni~~~  334 (463)
T PRK06370        305 YAAGDCNGRGAFTHTAYNDARIVAANLLDG  334 (463)
T ss_pred             EEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence            999999876667788999999999999875

>KOG0405|consensus

Probab=99.84  E-value=1.4e-19  Score=161.77  Aligned_cols=275  Identities=17%  Similarity=0.218  Sum_probs=177.2

Q ss_pred             CccccccCCCCCCCCCCceeeecCCCccccC---CCCCCCCCCCCCChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEE
Q psy2343           4 DLGGVWNSQASCGRVYPSLHLISPKFNTQVP---DYPMPDNYPVYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQ   79 (396)
Q Consensus         4 ~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~---~~p~p~~~~~~p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~   79 (396)
                      .+||++....   =+-..+-.+.+...-.+.   +|-||.+...-.....+.+--..|..++ ++.++..-+..|.-|+-
T Consensus        54 ~lGGTCVn~G---CVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G  130 (478)
T KOG0405|consen   54 GLGGTCVNVG---CVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEG  130 (478)
T ss_pred             CcCceEEeec---cccceeEEehhhhhHHhhhhhhcCCccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEee
Confidence            6888887652   122223333333322222   3545543222224455555555555554 34444444555555543


Q ss_pred             e-----CCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHH
Q psy2343          80 Y-----EDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDI  151 (396)
Q Consensus        80 ~-----~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~  151 (396)
                      .     ++...|...+++  .+++++++||||.  +|.+|.||| ++.   +.|..+-+.++ ..||++|||+|..|+|+
T Consensus       131 ~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg--~p~~PnIpG~E~g---idSDgff~Lee-~Pkr~vvvGaGYIavE~  204 (478)
T KOG0405|consen  131 RARFVSPGEVEVEVNDGTKIVYTAKHILIATGG--RPIIPNIPGAELG---IDSDGFFDLEE-QPKRVVVVGAGYIAVEF  204 (478)
T ss_pred             eEEEcCCCceEEEecCCeeEEEecceEEEEeCC--ccCCCCCCchhhc---cccccccchhh-cCceEEEEccceEEEEh
Confidence            2     555677776775  3789999999999  999999999 542   44544444433 46899999999999999


Q ss_pred             HHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccC
Q psy2343         152 AVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHP  231 (396)
Q Consensus       152 a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  231 (396)
                      |.-++..+.+++++.|....                     |+      .+.                           .
T Consensus       205 Agi~~gLgsethlfiR~~kv---------------------LR------~FD---------------------------~  230 (478)
T KOG0405|consen  205 AGIFAGLGSETHLFIRQEKV---------------------LR------GFD---------------------------E  230 (478)
T ss_pred             hhHHhhcCCeeEEEEecchh---------------------hc------chh---------------------------H
Confidence            99999999999999998621                     00      111                           1


Q ss_pred             ccCchhhhcccCCCeEec--CCcceEe----C-CeEEecCCcEecCcEEEEccCCCCCCCCCC--cccccccCCcccccc
Q psy2343         232 IMNSQILYHIGHGDILPK--DDIKNLN----G-NIVHFVDDTHIEVDTIIYATGYNRHFPFID--KEKLEWKLGIPDLFI  302 (396)
Q Consensus       232 ~~~~~~~~~i~~g~i~~~--~~i~~i~----~-~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~~~~~~l~~  302 (396)
                      ++++.+.+.+....|.++  +.++++.    + ..+..+.|+...+|.++||||..|+.--|.  .-+++.+.++....+
T Consensus       231 ~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivD  310 (478)
T KOG0405|consen  231 MISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVD  310 (478)
T ss_pred             HHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEe
Confidence            122333333333334443  2344432    2 234456677678999999999999875443  334445555555556


Q ss_pred             ccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhc
Q psy2343         303 HIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA  341 (396)
Q Consensus       303 ~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~  341 (396)
                      ....+++|+|+++||+.....+.|.|-+.+|.+|..+-|
T Consensus       311 eYq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~  349 (478)
T KOG0405|consen  311 EYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFG  349 (478)
T ss_pred             ccccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhc
Confidence            777899999999999987778889999999999988877

>PLN02546 glutathione reductase

Probab=99.83  E-value=1.1e-19  Score=181.09  Aligned_cols=196  Identities=13%  Similarity=0.110  Sum_probs=133.4

Q ss_pred             EEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEE
Q psy2343          85 EVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVY  163 (396)
Q Consensus        85 ~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~  163 (396)
                      +|.+ +|+++.||+||||||.  .|..|++|| ..   ++++.+.... ...+++|+|||+|.+|+|+|..++..+.+|+
T Consensus       207 ~V~v-~G~~~~~D~LVIATGs--~p~~P~IpG~~~---v~~~~~~l~~-~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vt  279 (558)
T PLN02546        207 TVDV-DGKLYTARNILIAVGG--RPFIPDIPGIEH---AIDSDAALDL-PSKPEKIAIVGGGYIALEFAGIFNGLKSDVH  279 (558)
T ss_pred             EEEE-CCEEEECCEEEEeCCC--CCCCCCCCChhh---ccCHHHHHhc-cccCCeEEEECCCHHHHHHHHHHHhcCCeEE
Confidence            4544 5667899999999999  899999998 31   2333222221 2357899999999999999999999999999


Q ss_pred             EEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccC
Q psy2343         164 HSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH  243 (396)
Q Consensus       164 l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~  243 (396)
                      ++.|.+.. +|..    +         .         .+...                               +.+.+..
T Consensus       280 lv~~~~~i-l~~~----d---------~---------~~~~~-------------------------------l~~~L~~  305 (558)
T PLN02546        280 VFIRQKKV-LRGF----D---------E---------EVRDF-------------------------------VAEQMSL  305 (558)
T ss_pred             EEEecccc-cccc----C---------H---------HHHHH-------------------------------HHHHHHH
Confidence            99987531 1110    0         0         00000                               1111112


Q ss_pred             CCeEe--cCCcceEeC---CeE--EecCCcEecCcEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEE
Q psy2343         244 GDILP--KDDIKNLNG---NIV--HFVDDTHIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIF  313 (396)
Q Consensus       244 g~i~~--~~~i~~i~~---~~v--~~~dG~~~~~D~VI~aTG~~~~~~~l--~~~~~~~~-~~~~~l~~~~~~~~~p~l~  313 (396)
                      ..|++  ...+.++++   +.+  .+.+++.+.+|.||+|+|++++..+|  +...++.+ ++.+.+.++ +.++.|+||
T Consensus       306 ~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~-l~Ts~p~IY  384 (558)
T PLN02546        306 RGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEY-SRTSVPSIW  384 (558)
T ss_pred             CCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCC-ceeCCCCEE
Confidence            23443  234555532   223  33455556699999999999998864  44455554 355666554 468999999


Q ss_pred             EEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         314 FFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       314 ~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      ++||+.......+.|..||+.+|..+.|.
T Consensus       385 AaGDv~~~~~l~~~A~~~g~~~a~~i~g~  413 (558)
T PLN02546        385 AVGDVTDRINLTPVALMEGGALAKTLFGN  413 (558)
T ss_pred             EeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence            99999876678889999999999999874

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.83  E-value=2.7e-19  Score=176.82  Aligned_cols=202  Identities=18%  Similarity=0.212  Sum_probs=136.1

Q ss_pred             CCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhc
Q psy2343          81 EDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASH  157 (396)
Q Consensus        81 ~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~  157 (396)
                      .+.+.|...+|+  ++.||+||||||+  .|..|  || .+.+.++++.+.... ...+++|+|||+|.+|+|+|..+++
T Consensus       119 ~~~v~v~~~~g~~~~~~~d~lViATGs--~p~~~--pg~~~~~~v~~~~~~~~~-~~~~~~vvVIGgG~ig~E~A~~l~~  193 (466)
T PRK07818        119 ANTLEVDLNDGGTETVTFDNAIIATGS--STRLL--PGTSLSENVVTYEEQILS-RELPKSIVIAGAGAIGMEFAYVLKN  193 (466)
T ss_pred             CCEEEEEecCCCeeEEEcCEEEEeCCC--CCCCC--CCCCCCCcEEchHHHhcc-ccCCCeEEEECCcHHHHHHHHHHHH
Confidence            455666655553  5899999999999  77654  45 333445544432211 2356899999999999999999999


Q ss_pred             CCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchh
Q psy2343         158 HSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQI  237 (396)
Q Consensus       158 ~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  237 (396)
                      .+.+|+++.+.+. ++|..    ..                  .+..                               .+
T Consensus       194 ~G~~Vtlv~~~~~-~l~~~----d~------------------~~~~-------------------------------~l  219 (466)
T PRK07818        194 YGVDVTIVEFLDR-ALPNE----DA------------------EVSK-------------------------------EI  219 (466)
T ss_pred             cCCeEEEEecCCC-cCCcc----CH------------------HHHH-------------------------------HH
Confidence            9999999998753 12211    00                  0111                               11


Q ss_pred             hhcccCCCeEe--cCCcceEeCC--e--EEec--CCc--EecCcEEEEccCCCCCCCCC--Cccccccc-CCcccccccc
Q psy2343         238 LYHIGHGDILP--KDDIKNLNGN--I--VHFV--DDT--HIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHI  304 (396)
Q Consensus       238 ~~~i~~g~i~~--~~~i~~i~~~--~--v~~~--dG~--~~~~D~VI~aTG~~~~~~~l--~~~~~~~~-~~~~~l~~~~  304 (396)
                      .+.+.+..|++  ...|+++++.  .  +.+.  ||+  .+++|.||+|+|++|+..++  +...+..+ ++.+.+... 
T Consensus       220 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~-  298 (466)
T PRK07818        220 AKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDY-  298 (466)
T ss_pred             HHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCC-
Confidence            11222223443  3456666532  2  4444  674  58999999999999998764  44445443 345666655 


Q ss_pred             ccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         305 APRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       305 ~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      +.++.|+||++||+.....+.+.|..||+.+|.++.|.
T Consensus       299 ~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~  336 (466)
T PRK07818        299 MRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGA  336 (466)
T ss_pred             cccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence            46899999999999866678889999999999999875

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.83  E-value=9.3e-20  Score=179.56  Aligned_cols=229  Identities=21%  Similarity=0.222  Sum_probs=147.5

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Cccccee
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEIL  123 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~  123 (396)
                      |....++.+++...++++++.  +++++.|..        .+++++.. ..||+||+|||+. .|..+.++| ...| ++
T Consensus       186 ~~~~~~~~~~~~~~l~~~gv~--~~~~~~v~~--------~v~~~~~~-~~~d~vvlAtGa~-~~~~~~i~G~~~~g-v~  252 (457)
T PRK11749        186 FRLPKDIVDREVERLLKLGVE--IRTNTEVGR--------DITLDELR-AGYDAVFIGTGAG-LPRFLGIPGENLGG-VY  252 (457)
T ss_pred             ccCCHHHHHHHHHHHHHcCCE--EEeCCEECC--------ccCHHHHH-hhCCEEEEccCCC-CCCCCCCCCccCCC-cE
Confidence            333467888888888888876  778876521        12233333 6799999999983 467777888 4333 34


Q ss_pred             ecccCCC--------CCCCCCCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccCceeecCCCCCCChhHHHHhhCcccc
Q psy2343         124 HSMDYKS--------PDQIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS  194 (396)
Q Consensus       124 hs~~~~~--------~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~  194 (396)
                      +..++..        .....+++|+|||+|.+|+|+|..+++.+. +|+++.|++...+|...                 
T Consensus       253 ~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~-----------------  315 (457)
T PRK11749        253 SAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASE-----------------  315 (457)
T ss_pred             EHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCH-----------------
Confidence            4322211        112368999999999999999999998855 89999997643333210                 


Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC-----eEEec----
Q psy2343         195 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVHFV----  263 (396)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~-----~v~~~----  263 (396)
                            .....                                   +.+..|++  ...+.++.++     +|.+.    
T Consensus       316 ------~~~~~-----------------------------------~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~  354 (457)
T PRK11749        316 ------EEVEH-----------------------------------AKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMEL  354 (457)
T ss_pred             ------HHHHH-----------------------------------HHHCCCEEEecCCcEEEEecCCceEEEEEEEEEe
Confidence                  00000                                   00111222  2233333221     13331    


Q ss_pred             ---------------CCcEecCcEEEEccCCCCCCCCCCc-cccccc-CCccccccccccCCCCcEEEEecccCcCchhh
Q psy2343         264 ---------------DDTHIEVDTIIYATGYNRHFPFIDK-EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGD  326 (396)
Q Consensus       264 ---------------dG~~~~~D~VI~aTG~~~~~~~l~~-~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~  326 (396)
                                     +++.+++|.||+|+|++++..++.. ..+..+ .+.+.+....+.++.|+||++||+......+.
T Consensus       355 ~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~  434 (457)
T PRK11749        355 GEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVV  434 (457)
T ss_pred             cCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHH
Confidence                           2235899999999999999766542 234332 35566655466889999999999986545777


Q ss_pred             HHHHHHHHHHHHHhcccc
Q psy2343         327 GLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       327 ~ae~qa~~~a~~l~~~~~  344 (396)
                      .|..||+.+|..+...++
T Consensus       435 ~A~~~G~~aA~~I~~~l~  452 (457)
T PRK11749        435 WAVGDGKDAAEAIHEYLE  452 (457)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            899999999988876654

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.82  E-value=7e-20  Score=181.75  Aligned_cols=234  Identities=17%  Similarity=0.101  Sum_probs=150.8

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEE------eCCeEEEEEcc---CcEEEcCEEEEcccCCCCCCCC-CCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ------YEDIWEVELSN---GKKKKYDFIAVCNGAQRVARYP-NYS  115 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~------~~~~~~V~~~~---g~~~~~d~vvvAtG~~~~p~~P-~~~  115 (396)
                      ....++.++++..+++++..  ++.+.++..|+.      ..+.++|.+.+   +.++.||+||||||+  .|..| .+|
T Consensus        88 ~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs--~p~~p~~i~  163 (499)
T PTZ00052         88 FNWGKLVTTVQNHIRSLNFS--YRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGG--RPSIPEDVP  163 (499)
T ss_pred             cCHHHHHHHHHHHHHHhhHH--HHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCC--CCCCCCCCC
Confidence            35788999999998887543  433333332222      13334555432   346899999999999  88888 488


Q ss_pred             CCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccC
Q psy2343         116 GYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS  195 (396)
Q Consensus       116 g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~  195 (396)
                      |.-. ..+.+.+..... ...++|+|||+|.+|+|+|..|++.+.+|+++.+..  .++..    +         .    
T Consensus       164 G~~~-~~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~--~l~~~----d---------~----  222 (499)
T PTZ00052        164 GAKE-YSITSDDIFSLS-KDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSI--PLRGF----D---------R----  222 (499)
T ss_pred             Cccc-eeecHHHHhhhh-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc--ccccC----C---------H----
Confidence            8211 123333332221 235799999999999999999999999999998742  12211    0         0    


Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeC----CeEEecCCcEec
Q psy2343         196 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNG----NIVHFVDDTHIE  269 (396)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~----~~v~~~dG~~~~  269 (396)
                           .+.+.                               +.+.+....|++.  ..+.++++    ..|.+.+|+.++
T Consensus       223 -----~~~~~-------------------------------l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~  266 (499)
T PTZ00052        223 -----QCSEK-------------------------------VVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTEL  266 (499)
T ss_pred             -----HHHHH-------------------------------HHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEE
Confidence                 01111                               1111111233332  23344432    136678898899


Q ss_pred             CcEEEEccCCCCCCCCCC--cccccccC-CccccccccccCCCCcEEEEecccC-cCchhhHHHHHHHHHHHHHhcc
Q psy2343         270 VDTIIYATGYNRHFPFID--KEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       270 ~D~VI~aTG~~~~~~~l~--~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~-~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      +|.||+|+|++|+..+|.  ...++.+. +.+.+...  .++.|+||++||+.. .....+.|..||+.+|..|.+.
T Consensus       267 ~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~  341 (499)
T PTZ00052        267 FDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQ  341 (499)
T ss_pred             cCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCC
Confidence            999999999999998874  33445443 33344433  789999999999874 3457788999999999999874

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.82  E-value=4.7e-19  Score=175.36  Aligned_cols=215  Identities=14%  Similarity=0.096  Sum_probs=140.1

Q ss_pred             CcEEEEEEEeCCeEEEEEcc--CcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcH
Q psy2343          71 NTEVINLEQYEDIWEVELSN--GKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSG  148 (396)
Q Consensus        71 ~t~V~~v~~~~~~~~V~~~~--g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa  148 (396)
                      ..++..+++.++.|+|.+..  +.+++||+||||||+  .|+.|+.. .+.+..++.++........+|+|+|||+|.+|
T Consensus       119 ~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs--~p~~~p~~-~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g  195 (475)
T PRK06327        119 KGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGS--EPRHLPGV-PFDNKIILDNTGALNFTEVPKKLAVIGAGVIG  195 (475)
T ss_pred             EEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCC--CCCCCCCC-CCCCceEECcHHHhcccccCCeEEEECCCHHH
Confidence            34555666555577887743  456899999999999  67543211 23333334333222223357999999999999


Q ss_pred             HHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCc
Q psy2343         149 CDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDA  228 (396)
Q Consensus       149 ~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  228 (396)
                      +|+|..+++.+.+|+++.|++.. +|..    +.                  .+...                       
T Consensus       196 ~E~A~~l~~~g~~Vtli~~~~~~-l~~~----d~------------------~~~~~-----------------------  229 (475)
T PRK06327        196 LELGSVWRRLGAEVTILEALPAF-LAAA----DE------------------QVAKE-----------------------  229 (475)
T ss_pred             HHHHHHHHHcCCeEEEEeCCCcc-CCcC----CH------------------HHHHH-----------------------
Confidence            99999999999999999987632 1210    00                  11111                       


Q ss_pred             ccCccCchhhhcccCCCeEe--cCCcceEeCC--e--EEecC--C--cEecCcEEEEccCCCCCCCCCC--ccccccc-C
Q psy2343         229 AHPIMNSQILYHIGHGDILP--KDDIKNLNGN--I--VHFVD--D--THIEVDTIIYATGYNRHFPFID--KEKLEWK-L  295 (396)
Q Consensus       229 ~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~--~--v~~~d--G--~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~-~  295 (396)
                              +.+.+....|++  ...|.+++.+  .  +.+.+  |  +.+++|.||+|+|++|+.++|.  ...+..+ +
T Consensus       230 --------~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~  301 (475)
T PRK06327        230 --------AAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDER  301 (475)
T ss_pred             --------HHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCC
Confidence                    111111223443  3456666532  2  44555  3  3589999999999999988553  2334443 3


Q ss_pred             CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343         296 GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       296 ~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      +.+.+.+. +.++.|+||++||+.........|..||+.+|..+.+..
T Consensus       302 G~i~vd~~-~~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~  348 (475)
T PRK06327        302 GFIPVDDH-CRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQK  348 (475)
T ss_pred             CeEeECCC-CccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCC
Confidence            45666554 468899999999997655677889999999999998753

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.82  E-value=4.7e-19  Score=175.14  Aligned_cols=204  Identities=14%  Similarity=0.095  Sum_probs=136.7

Q ss_pred             CCeEEEEEccC-cEEEcCEEEEcccCCCCCCCCCCC-CCccc-ceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhc
Q psy2343          81 EDIWEVELSNG-KKKKYDFIAVCNGAQRVARYPNYS-GYFSG-EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASH  157 (396)
Q Consensus        81 ~~~~~V~~~~g-~~~~~d~vvvAtG~~~~p~~P~~~-g~~~g-~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~  157 (396)
                      .+.+.|...++ .++.||+||||||.  .|+.|++| + +.+ .++++.+.... ...+++|+|||+|.+|+|+|..+++
T Consensus       116 ~~~~~v~~~~g~~~~~~d~lVlAtG~--~p~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~l~~  191 (461)
T TIGR01350       116 PGTVLVTGENGEETLTAKNIIIATGS--RPRSLPGPFD-FDGEVVITSTGALNL-KEVPESLVIIGGGVIGIEFASIFAS  191 (461)
T ss_pred             CCEEEEecCCCcEEEEeCEEEEcCCC--CCCCCCCCCC-CCCceEEcchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHH
Confidence            45667766554 46899999999998  88877765 3 122 23333322221 2346899999999999999999999


Q ss_pred             CCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchh
Q psy2343         158 HSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQI  237 (396)
Q Consensus       158 ~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  237 (396)
                      .+.+|+++.|.+.. +|..    .             .     .+...                               +
T Consensus       192 ~g~~Vtli~~~~~~-l~~~----~-------------~-----~~~~~-------------------------------~  217 (461)
T TIGR01350       192 LGSKVTVIEMLDRI-LPGE----D-------------A-----EVSKV-------------------------------V  217 (461)
T ss_pred             cCCcEEEEEcCCCC-CCCC----C-------------H-----HHHHH-------------------------------H
Confidence            99999999987632 1210    0             0     11111                               1


Q ss_pred             hhcccCCCeEe--cCCcceEe--CCeE--EecCC--cEecCcEEEEccCCCCCCC--CCCcccccccC-Ccccccccccc
Q psy2343         238 LYHIGHGDILP--KDDIKNLN--GNIV--HFVDD--THIEVDTIIYATGYNRHFP--FIDKEKLEWKL-GIPDLFIHIAP  306 (396)
Q Consensus       238 ~~~i~~g~i~~--~~~i~~i~--~~~v--~~~dG--~~~~~D~VI~aTG~~~~~~--~l~~~~~~~~~-~~~~l~~~~~~  306 (396)
                      .+.+.+..|++  ...+.+++  ++++  .+.+|  +++++|.||+|+|.+|+..  +++...+..+. +.+.+.+. +.
T Consensus       218 ~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~-l~  296 (461)
T TIGR01350       218 AKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEY-MR  296 (461)
T ss_pred             HHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCC-cc
Confidence            11122223433  34566554  3344  34567  4699999999999999987  45554455443 44655544 56


Q ss_pred             CCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343         307 RNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       307 ~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      ++.|+||++||+.........|..||+.+|..+.+..
T Consensus       297 t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (461)
T TIGR01350       297 TNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKE  333 (461)
T ss_pred             cCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence            7899999999997656678899999999999998753

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.82  E-value=3.5e-19  Score=184.36  Aligned_cols=248  Identities=17%  Similarity=0.170  Sum_probs=149.3

Q ss_pred             CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCccccee
Q psy2343          44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEIL  123 (396)
Q Consensus        44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~  123 (396)
                      .|.-..++.++..+.+..++++  +++++.| .++         .++.....||+||||||+. .|..+.++|.-.+ ++
T Consensus       584 ~~Rlp~evL~~die~l~~~GVe--~~~gt~V-di~---------le~L~~~gYDaVILATGA~-~~~~l~IpG~~~g-V~  649 (1019)
T PRK09853        584 QFRIPAELIQHDIEFVKAHGVK--FEFGCSP-DLT---------VEQLKNEGYDYVVVAIGAD-KNGGLKLEGGNQN-VI  649 (1019)
T ss_pred             cccccHHHHHHHHHHHHHcCCE--EEeCcee-EEE---------hhhheeccCCEEEECcCCC-CCCCCCCCCccCC-ce
Confidence            3333345666666777778887  8889876 222         2233335699999999994 3555667772222 33


Q ss_pred             ecccCCC------CCCCCCCeEEEEcCCCcHHHHHHHHhcC-C-CcEEEEeccCceeecCCCCCCChhHHHHhhCccccC
Q psy2343         124 HSMDYKS------PDQIRNKRVLVVGAGNSGCDIAVDASHH-S-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS  195 (396)
Q Consensus       124 hs~~~~~------~~~~~~k~VvVVG~G~sa~d~a~~l~~~-~-~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~  195 (396)
                      ++.++..      .....||+|+|||||++|+|+|..+.+. + ++|+++.|++...+|...                  
T Consensus       650 saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~------------------  711 (1019)
T PRK09853        650 KALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWR------------------  711 (1019)
T ss_pred             ehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccH------------------
Confidence            3322211      1123589999999999999999998876 3 589999998743333210                  


Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecC-CcceEeCC----eEEecCCcEecC
Q psy2343         196 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD-DIKNLNGN----IVHFVDDTHIEV  270 (396)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~i~~i~~~----~v~~~dG~~~~~  270 (396)
                           ........        .|+.          .............|++.... .+...+..    .+...++..+++
T Consensus       712 -----eEle~Ale--------eGVe----------~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~a  768 (1019)
T PRK09853        712 -----EEYEEALE--------DGVE----------FKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEA  768 (1019)
T ss_pred             -----HHHHHHHH--------cCCE----------EEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEe
Confidence                 00111010        0110          00000000000122222110 00011111    122234456999


Q ss_pred             cEEEEccCCCCCCCCCCcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccccCCC
Q psy2343         271 DTIIYATGYNRHFPFIDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSK  347 (396)
Q Consensus       271 D~VI~aTG~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~lp~  347 (396)
                      |.||+|+|++++..++...++..+. +.+.+ ...+.++.|+||++||+..+...+..|..||+.+|+.|.+....+.
T Consensus       769 D~VIvAIG~~Pntelle~~GL~ld~~G~I~V-DetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~~~~  845 (1019)
T PRK09853        769 DTVITAIGEQVDTELLKANGIPLDKKGWPVV-DANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREGIRS  845 (1019)
T ss_pred             CEEEECCCCcCChhHHHhcCccccCCCCEEe-CCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            9999999999999888766555433 44555 4556788999999999986666778999999999999988766443

>TIGR03452 mycothione_red mycothione reductase

Probab=99.82  E-value=1.7e-19  Score=177.21  Aligned_cols=204  Identities=13%  Similarity=0.100  Sum_probs=138.5

Q ss_pred             CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCC
Q psy2343          81 EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSE  160 (396)
Q Consensus        81 ~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~  160 (396)
                      .+.++|++.+|+++.||+||||||+  .|..|++.+...-.+..+.+..... ..+|+|+|||+|.+|+|+|..+++.+.
T Consensus       117 ~~~~~V~~~~g~~~~~d~lIiATGs--~p~~p~~~~~~~~~~~~~~~~~~l~-~~~k~vvVIGgG~ig~E~A~~l~~~G~  193 (452)
T TIGR03452       117 VGPRTLRTGDGEEITGDQIVIAAGS--RPYIPPAIADSGVRYHTNEDIMRLP-ELPESLVIVGGGYIAAEFAHVFSALGT  193 (452)
T ss_pred             ecCCEEEECCCcEEEeCEEEEEECC--CCCCCCCCCCCCCEEEcHHHHHhhh-hcCCcEEEECCCHHHHHHHHHHHhCCC
Confidence            3556788877777999999999999  8888864431111222322222211 236899999999999999999999999


Q ss_pred             cEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhc
Q psy2343         161 KVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYH  240 (396)
Q Consensus       161 ~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  240 (396)
                      +|+++.+.+.. +|..    +.                  .+...+.                               +.
T Consensus       194 ~Vtli~~~~~l-l~~~----d~------------------~~~~~l~-------------------------------~~  219 (452)
T TIGR03452       194 RVTIVNRSTKL-LRHL----DE------------------DISDRFT-------------------------------EI  219 (452)
T ss_pred             cEEEEEccCcc-cccc----CH------------------HHHHHHH-------------------------------HH
Confidence            99999987642 1110    00                  1111111                               11


Q ss_pred             ccCC-CeEecCCcceEe--CC--eEEecCCcEecCcEEEEccCCCCCCCCCCc--cccccc-CCccccccccccCCCCcE
Q psy2343         241 IGHG-DILPKDDIKNLN--GN--IVHFVDDTHIEVDTIIYATGYNRHFPFIDK--EKLEWK-LGIPDLFIHIAPRNLDNI  312 (396)
Q Consensus       241 i~~g-~i~~~~~i~~i~--~~--~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~--~~~~~~-~~~~~l~~~~~~~~~p~l  312 (396)
                      +..+ ++.....|.+++  ++  .+.+.+|+.+++|.||+|+|.+|+..++..  .+++.+ ++.+.+.+++ .|+.|+|
T Consensus       220 ~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~~I  298 (452)
T TIGR03452       220 AKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYG-RTSARGV  298 (452)
T ss_pred             HhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCc-ccCCCCE
Confidence            1111 222234455664  22  255668888999999999999999988643  345553 3556666554 6899999


Q ss_pred             EEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         313 FFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       313 ~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      |++||+.....+.+.|..||+.+|+++.+.
T Consensus       299 yA~GD~~~~~~l~~~A~~~g~~~a~ni~~~  328 (452)
T TIGR03452       299 WALGDVSSPYQLKHVANAEARVVKHNLLHP  328 (452)
T ss_pred             EEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence            999999876677788999999999999875

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.82  E-value=5.1e-19  Score=185.66  Aligned_cols=251  Identities=18%  Similarity=0.162  Sum_probs=154.0

Q ss_pred             CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccce
Q psy2343          44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEI  122 (396)
Q Consensus        44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~  122 (396)
                      +|--..++.+...+.++.+|+.  +++|+.|-        ..+++++.....||+||||||+. .|+.+++|| ...| +
T Consensus       351 ~~rlp~~vi~~~i~~l~~~Gv~--f~~n~~vG--------~dit~~~l~~~~yDAV~LAtGA~-~pr~l~IpG~dl~G-V  418 (944)
T PRK12779        351 EFRLPNQLIDDVVEKIKLLGGR--FVKNFVVG--------KTATLEDLKAAGFWKIFVGTGAG-LPTFMNVPGEHLLG-V  418 (944)
T ss_pred             CCcChHHHHHHHHHHHHhhcCe--EEEeEEec--------cEEeHHHhccccCCEEEEeCCCC-CCCcCCCCCCcCcC-c
Confidence            3434567888888888888987  77777652        14555555545799999999994 688888998 4444 3


Q ss_pred             eecccCCC--------------C-CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHH
Q psy2343         123 LHSMDYKS--------------P-DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWML  187 (396)
Q Consensus       123 ~hs~~~~~--------------~-~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~  187 (396)
                      +.+.+|..              . ....||+|+|||||++|+|+|..+.+.+++|+++.|++...+|..           
T Consensus       419 ~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~-----------  487 (944)
T PRK12779        419 MSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPAR-----------  487 (944)
T ss_pred             EEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCccccccc-----------
Confidence            33222211              1 134799999999999999999999999889999999863222211           


Q ss_pred             hhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccC---CCeEe-cCCcceE---e--CC
Q psy2343         188 QLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH---GDILP-KDDIKNL---N--GN  258 (396)
Q Consensus       188 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~---g~i~~-~~~i~~i---~--~~  258 (396)
                           ..      .+.. ..  .      .|+.          ........+.+.+   ++++- .......   +  +.
T Consensus       488 -----~~------e~~~-a~--e------eGV~----------~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr  537 (944)
T PRK12779        488 -----VE------ELHH-AL--E------EGIN----------LAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGR  537 (944)
T ss_pred             -----HH------HHHH-HH--H------CCCE----------EEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCc
Confidence                 00      0100 00  0      0110          0000000111111   11210 0000000   0  11


Q ss_pred             eEEecCCc--EecCcEEEEccCCCCCCCCCCc-cccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHH
Q psy2343         259 IVHFVDDT--HIEVDTIIYATGYNRHFPFIDK-EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQF  334 (396)
Q Consensus       259 ~v~~~dG~--~~~~D~VI~aTG~~~~~~~l~~-~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~  334 (396)
                      .....+|+  .+++|.||+|+|+.++..+... ..++.+ .+.+.+.+..+.|+.|+||++||+..+...+..|..+|+.
T Consensus       538 ~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~  617 (944)
T PRK12779        538 RSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQA  617 (944)
T ss_pred             eeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHHHHHHHHHHH
Confidence            11112343  4899999999999988543322 234433 3455666556788999999999998776678899999999


Q ss_pred             HHHHHhccccCCC
Q psy2343         335 IRSYIQAFIRKSK  347 (396)
Q Consensus       335 ~a~~l~~~~~lp~  347 (396)
                      +|..|...+.+..
T Consensus       618 AA~~I~~~L~~~~  630 (944)
T PRK12779        618 AAKEIVGEIPFTP  630 (944)
T ss_pred             HHHHHHHHhcccc
Confidence            9999998877654

>PTZ00058 glutathione reductase; Provisional

Probab=99.82  E-value=5.6e-19  Score=176.10  Aligned_cols=192  Identities=15%  Similarity=0.206  Sum_probs=134.3

Q ss_pred             ccCcEEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343          89 SNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR  167 (396)
Q Consensus        89 ~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r  167 (396)
                      ++|++++||+||||||+  .|..|++|| .+   ++++.++.....  +++|+|||+|.+|+|+|..+++.+.+|+++.|
T Consensus       196 ~~g~~i~ad~lVIATGS--~P~~P~IpG~~~---v~ts~~~~~l~~--pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~  268 (561)
T PTZ00058        196 DDGQVIEGKNILIAVGN--KPIFPDVKGKEF---TISSDDFFKIKE--AKRIGIAGSGYIAVELINVVNRLGAESYIFAR  268 (561)
T ss_pred             CCCcEEECCEEEEecCC--CCCCCCCCCcee---EEEHHHHhhccC--CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEe
Confidence            45667999999999998  899999998 32   455555443322  79999999999999999999999999999998


Q ss_pred             cCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE
Q psy2343         168 RGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL  247 (396)
Q Consensus       168 ~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~  247 (396)
                      .+.. +|..    .         .         .+.+                               .+.+.+.+..|+
T Consensus       269 ~~~i-l~~~----d---------~---------~i~~-------------------------------~l~~~L~~~GV~  294 (561)
T PTZ00058        269 GNRL-LRKF----D---------E---------TIIN-------------------------------ELENDMKKNNIN  294 (561)
T ss_pred             cccc-cccC----C---------H---------HHHH-------------------------------HHHHHHHHCCCE
Confidence            7632 2211    0         0         1111                               111122222333


Q ss_pred             e--cCCcceEeCC---e--EEecCC-cEecCcEEEEccCCCCCCCCCCcccc--cccCCccccccccccCCCCcEEEEec
Q psy2343         248 P--KDDIKNLNGN---I--VHFVDD-THIEVDTIIYATGYNRHFPFIDKEKL--EWKLGIPDLFIHIAPRNLDNIFFFGF  317 (396)
Q Consensus       248 ~--~~~i~~i~~~---~--v~~~dG-~~~~~D~VI~aTG~~~~~~~l~~~~~--~~~~~~~~l~~~~~~~~~p~l~~iG~  317 (396)
                      +  ...+.++++.   .  +.+.++ +.+++|.||+|+|++|+..+|..+.+  ..+++.+.+.+. +.++.|+||++||
T Consensus       295 i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VDe~-lqTs~p~IYA~GD  373 (561)
T PTZ00058        295 IITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDN-QRTSVKHIYAVGD  373 (561)
T ss_pred             EEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEECcC-CccCCCCEEEeEe
Confidence            3  3345566532   2  334454 46999999999999999888754322  234455666554 5789999999999


Q ss_pred             ccC----------------------------------cCchhhHHHHHHHHHHHHHhcc
Q psy2343         318 VNA----------------------------------AAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       318 ~~~----------------------------------~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      +..                                  .....+.|..||+.+|.++.|.
T Consensus       374 v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~  432 (561)
T PTZ00058        374 CCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP  432 (561)
T ss_pred             ccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence            976                                  3456778999999999999875

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.81  E-value=1.4e-18  Score=170.74  Aligned_cols=202  Identities=15%  Similarity=0.141  Sum_probs=141.2

Q ss_pred             CCeEEEEEccCc-EEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhc
Q psy2343          81 EDIWEVELSNGK-KKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASH  157 (396)
Q Consensus        81 ~~~~~V~~~~g~-~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~  157 (396)
                      .+.+.|.+.++. ++.||+||||||+  .|..|++||  .+.+ ++++.++... ...+++|+|||+|.+|+|+|..+++
T Consensus       104 ~~~~~v~~~~g~~~~~~d~lviATGs--~p~~p~i~G~~~~~~-v~~~~~~~~~-~~~~~~v~ViGgG~~g~E~A~~l~~  179 (441)
T PRK08010        104 NHSLRVHRPEGNLEIHGEKIFINTGA--QTVVPPIPGITTTPG-VYDSTGLLNL-KELPGHLGILGGGYIGVEFASMFAN  179 (441)
T ss_pred             CCEEEEEeCCCeEEEEeCEEEEcCCC--cCCCCCCCCccCCCC-EEChhHhhcc-cccCCeEEEECCCHHHHHHHHHHHH
Confidence            466778777765 5899999999999  899999999  3444 5555444433 2356899999999999999999999


Q ss_pred             CCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchh
Q psy2343         158 HSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQI  237 (396)
Q Consensus       158 ~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  237 (396)
                      .+.+|+++.|.+. ++|...    .                  .+...                               +
T Consensus       180 ~g~~Vtli~~~~~-~l~~~~----~------------------~~~~~-------------------------------l  205 (441)
T PRK08010        180 FGSKVTILEAASL-FLPRED----R------------------DIADN-------------------------------I  205 (441)
T ss_pred             CCCeEEEEecCCC-CCCCcC----H------------------HHHHH-------------------------------H
Confidence            9999999998753 222210    0                  11111                               1


Q ss_pred             hhcccCCCeEe--cCCcceEeC--CeEEe--cCCcEecCcEEEEccCCCCCCCCCC--ccccccc-CCccccccccccCC
Q psy2343         238 LYHIGHGDILP--KDDIKNLNG--NIVHF--VDDTHIEVDTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRN  308 (396)
Q Consensus       238 ~~~i~~g~i~~--~~~i~~i~~--~~v~~--~dG~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~-~~~~~l~~~~~~~~  308 (396)
                      .+.+.+..|++  ...|.+++.  +.+.+  ++| .+++|.||+|+|.+|+..++.  ...+.++ ++.+.+.++ +.++
T Consensus       206 ~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~-~~Ts  283 (441)
T PRK08010        206 ATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKY-LHTT  283 (441)
T ss_pred             HHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCC-cccC
Confidence            11222223443  345666653  33433  344 488999999999999987643  3345554 355666655 4788


Q ss_pred             CCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         309 LDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       309 ~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      .|+||++||+.......+.+..||+.++..+.|.
T Consensus       284 ~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~  317 (441)
T PRK08010        284 ADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE  317 (441)
T ss_pred             CCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence            9999999999876677788999999999999874

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.81  E-value=6.2e-19  Score=180.03  Aligned_cols=246  Identities=18%  Similarity=0.182  Sum_probs=145.9

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Cccccee
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEIL  123 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~  123 (396)
                      |...+++.++....+..+|+.  +++++.|. +       .++.++.. ..||+||+|||+. .+..+.+|| ...| ++
T Consensus       239 ~~~~~~~~~~~~~~l~~~Gv~--i~~~~~v~-~-------dv~~~~~~-~~~DaVilAtGa~-~~~~~~ipG~~~~g-v~  305 (652)
T PRK12814        239 FRLPESVIDADIAPLRAMGAE--FRFNTVFG-R-------DITLEELQ-KEFDAVLLAVGAQ-KASKMGIPGEELPG-VI  305 (652)
T ss_pred             CCCCHHHHHHHHHHHHHcCCE--EEeCCccc-C-------ccCHHHHH-hhcCEEEEEcCCC-CCCCCCCCCcCcCC-cE
Confidence            333456667777777888876  78887541 1       12222222 3599999999983 244567888 4444 23


Q ss_pred             ecccCC-----CCCCCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChH
Q psy2343         124 HSMDYK-----SPDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE  197 (396)
Q Consensus       124 hs~~~~-----~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~  197 (396)
                      +..++.     ......||+|+|||+|++|+|+|..+.+.+ ++|+++.|++...+|...     .              
T Consensus       306 ~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~-----~--------------  366 (652)
T PRK12814        306 SGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANR-----A--------------  366 (652)
T ss_pred             eHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCH-----H--------------
Confidence            322221     123457999999999999999999998875 579999998643333210     0              


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhccc-CCCeEecC-Ccc--eEeCC---eEEecCCc--Ee
Q psy2343         198 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIG-HGDILPKD-DIK--NLNGN---IVHFVDDT--HI  268 (396)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~-~g~i~~~~-~i~--~i~~~---~v~~~dG~--~~  268 (396)
                         .+.+. .+        .|+.          ...+....+... .+++.+.. .+.  ..+..   .....+|+  .+
T Consensus       367 ---ei~~a-~~--------eGV~----------i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i  424 (652)
T PRK12814        367 ---EIEEA-LA--------EGVS----------LRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTL  424 (652)
T ss_pred             ---HHHHH-HH--------cCCc----------EEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEE
Confidence               11110 00        0110          000000000000 11111100 000  00000   01112343  48


Q ss_pred             cCcEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcccc
Q psy2343         269 EVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       269 ~~D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~  344 (396)
                      ++|.||+|+|+.++..+++...+..+ ++.+.+....+.++.|+||++||+......+..|..||+.+|..|...+.
T Consensus       425 ~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~L~  501 (652)
T PRK12814        425 QADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLFLN  501 (652)
T ss_pred             ECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999888876656554 35566666677899999999999986666677888999998887765543

>KOG1336|consensus

Probab=99.81  E-value=6e-19  Score=165.05  Aligned_cols=228  Identities=18%  Similarity=0.221  Sum_probs=159.6

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY  128 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~  128 (396)
                      +.+......+.+..+++  .+++|.|++++..++  +|...+|+++.|++++||||+  .|+.|++||... +.+  +.+
T Consensus       127 ~~~a~r~~e~Yke~gIe--~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs--~~~~l~~pG~~~-~nv--~~i  197 (478)
T KOG1336|consen  127 EGLAKRTPEFYKEKGIE--LILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS--SAKTLDIPGVEL-KNV--FYL  197 (478)
T ss_pred             ccccccChhhHhhcCce--EEEcceeEEeecccc--EEEeCCCceeecceEEEeecC--ccccCCCCCccc-cce--eee
Confidence            44444455566777887  889999999997655  788889999999999999999  899999999332 222  223


Q ss_pred             CCCCC--------CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343         129 KSPDQ--------IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM  200 (396)
Q Consensus       129 ~~~~~--------~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~  200 (396)
                      ++.++        -.++.|+|||+|..|+|+|.+|...+.+||++.+.+ |.+|+.                +.      
T Consensus       198 reieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~-~~~~~l----------------f~------  254 (478)
T KOG1336|consen  198 REIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP-WLLPRL----------------FG------  254 (478)
T ss_pred             ccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc-cchhhh----------------hh------
Confidence            33321        247789999999999999999999999999999875 333321                00      


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC------eEEecCCcEecCcE
Q psy2343         201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN------IVHFVDDTHIEVDT  272 (396)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~------~v~~~dG~~~~~D~  272 (396)
                                                    +.+...+...+.+..|++  .+.+.+++++      .|.+.||+.+++|.
T Consensus       255 ------------------------------~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adl  304 (478)
T KOG1336|consen  255 ------------------------------PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADL  304 (478)
T ss_pred             ------------------------------HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCe
Confidence                                          011112222333334443  4556666543      37889999999999


Q ss_pred             EEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHH
Q psy2343         273 IIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYI  339 (396)
Q Consensus       273 VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l  339 (396)
                      ||+++|.+|+.+|+.......+.|.+.++.. |.+++|++|++||+...          ...+..+..+++.+...+
T Consensus       305 vv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~-f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai  380 (478)
T KOG1336|consen  305 VVVGIGIKPNTSFLEKGILLDSKGGIKVDEF-FQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAI  380 (478)
T ss_pred             EEEeeccccccccccccceecccCCEeehhc-eeeccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhh
Confidence            9999999999999986322334567777654 58889999999998752          123445566666544333

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.81  E-value=5.1e-19  Score=174.79  Aligned_cols=202  Identities=18%  Similarity=0.106  Sum_probs=132.1

Q ss_pred             CCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcC
Q psy2343          81 EDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH  158 (396)
Q Consensus        81 ~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~  158 (396)
                      .+...|+..++  .++.||+||||||+  .|..|++||.-. ..+++.+..... ...++|+|||+|.+|+|+|..+++.
T Consensus       127 ~~~v~v~~~~g~~~~~~~d~lVIATGs--~p~~p~ipG~~~-~~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~  202 (484)
T TIGR01438       127 KHRIKATNKKGKEKIYSAERFLIATGE--RPRYPGIPGAKE-LCITSDDLFSLP-YCPGKTLVVGASYVALECAGFLAGI  202 (484)
T ss_pred             CCEEEEeccCCCceEEEeCEEEEecCC--CCCCCCCCCccc-eeecHHHhhccc-ccCCCEEEECCCHHHHHHHHHHHHh
Confidence            34445543343  35899999999999  899999998211 123333333222 2356899999999999999999999


Q ss_pred             CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhh
Q psy2343         159 SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQIL  238 (396)
Q Consensus       159 ~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  238 (396)
                      +.+|+++.|..  .+|..    +.                  .+..                               .+.
T Consensus       203 G~~Vtli~~~~--~l~~~----d~------------------~~~~-------------------------------~l~  227 (484)
T TIGR01438       203 GLDVTVMVRSI--LLRGF----DQ------------------DCAN-------------------------------KVG  227 (484)
T ss_pred             CCcEEEEEecc--ccccc----CH------------------HHHH-------------------------------HHH
Confidence            99999998742  22211    00                  1111                               111


Q ss_pred             hcccCCCeEec--CCcceEeC--C--eEEecCCc---EecCcEEEEccCCCCCCCCCC--cccccccC--Cccccccccc
Q psy2343         239 YHIGHGDILPK--DDIKNLNG--N--IVHFVDDT---HIEVDTIIYATGYNRHFPFID--KEKLEWKL--GIPDLFIHIA  305 (396)
Q Consensus       239 ~~i~~g~i~~~--~~i~~i~~--~--~v~~~dG~---~~~~D~VI~aTG~~~~~~~l~--~~~~~~~~--~~~~l~~~~~  305 (396)
                      +.+....|++.  ..+.++++  +  .|.+++|+   ++++|.||+|+|++|+..+|.  ...+++++  +.+.+.+ .+
T Consensus       228 ~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~-~~  306 (484)
T TIGR01438       228 EHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADE-EE  306 (484)
T ss_pred             HHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCC-Cc
Confidence            12222234432  23344432  2  35666663   689999999999999988754  44455432  4455544 45


Q ss_pred             cCCCCcEEEEecccC-cCchhhHHHHHHHHHHHHHhcc
Q psy2343         306 PRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       306 ~~~~p~l~~iG~~~~-~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      .++.|+||++||+.. .....+.|..||+.+|+.|.+.
T Consensus       307 ~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~  344 (484)
T TIGR01438       307 QTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSG  344 (484)
T ss_pred             ccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcC
Confidence            789999999999875 3456778999999999999864

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.80  E-value=9.8e-19  Score=181.92  Aligned_cols=240  Identities=18%  Similarity=0.184  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeeccc
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMD  127 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~  127 (396)
                      +++.+...+.++++++.  +++++.|..        .|++++.....||+||||||+. .|+.|++|| ...| ++++.+
T Consensus       481 ~~~~~~~~~~l~~~gv~--~~~~~~v~~--------~v~~~~l~~~~ydavvlAtGa~-~~~~l~ipG~~~~g-V~~~~~  548 (752)
T PRK12778        481 KKIVDVEIENLKKLGVK--FETDVIVGK--------TITIEELEEEGFKGIFIASGAG-LPNFMNIPGENSNG-VMSSNE  548 (752)
T ss_pred             HHHHHHHHHHHHHCCCE--EECCCEECC--------cCCHHHHhhcCCCEEEEeCCCC-CCCCCCCCCCCCCC-cEEHHH
Confidence            35666666777778876  777876511        2334443345699999999983 588888898 3333 344332


Q ss_pred             CC-------------CCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCc-EEEEeccCceeecCCCCCCChhHHHHhhCccc
Q psy2343         128 YK-------------SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKF  193 (396)
Q Consensus       128 ~~-------------~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~-V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~  193 (396)
                      +.             ......||+|+|||+|++|+|+|..+.+.+.+ |+++.|++...+|..                .
T Consensus       549 ~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~----------------~  612 (752)
T PRK12778        549 YLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPAR----------------L  612 (752)
T ss_pred             HHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC----------------H
Confidence            21             11134689999999999999999999998765 999999864322221                0


Q ss_pred             cChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc--cCCCeEecCCcceE-------eCC--eEEe
Q psy2343         194 SSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDILPKDDIKNL-------NGN--IVHF  262 (396)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i--~~g~i~~~~~i~~i-------~~~--~v~~  262 (396)
                             .....+.        ..|+.          ........+.+  ..|+++-. .+..+       ++.  .+..
T Consensus       613 -------~e~~~~~--------~~GV~----------i~~~~~~~~i~~~~~g~v~~v-~~~~~~~~~~~~~G~~~~~~~  666 (752)
T PRK12778        613 -------EEVKHAK--------EEGIE----------FLTLHNPIEYLADEKGWVKQV-VLQKMELGEPDASGRRRPVAI  666 (752)
T ss_pred             -------HHHHHHH--------HcCCE----------EEecCcceEEEECCCCEEEEE-EEEEEEecCcCCCCCCCceec
Confidence                   0000000        00110          00000000111  01111100 00000       000  0111


Q ss_pred             cCC-cEecCcEEEEccCCCCCCCCCCcc-ccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHH
Q psy2343         263 VDD-THIEVDTIIYATGYNRHFPFIDKE-KLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYI  339 (396)
Q Consensus       263 ~dG-~~~~~D~VI~aTG~~~~~~~l~~~-~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l  339 (396)
                      ++. ..+++|.||+|+|++++..++... .+..+ .+.+.+.... .|+.|+||++||+..+...+..|..||+.+|..|
T Consensus       667 ~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I  745 (752)
T PRK12778        667 PGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEM-QSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAI  745 (752)
T ss_pred             CCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCC-CCCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHH
Confidence            111 248999999999999998766542 34443 3455555444 7899999999999876667788999999999988


Q ss_pred             hccc
Q psy2343         340 QAFI  343 (396)
Q Consensus       340 ~~~~  343 (396)
                      ...+
T Consensus       746 ~~~L  749 (752)
T PRK12778        746 DEYL  749 (752)
T ss_pred             HHHh
Confidence            7654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.80  E-value=1.3e-18  Score=171.58  Aligned_cols=190  Identities=17%  Similarity=0.150  Sum_probs=131.0

Q ss_pred             cEEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcC---CCcEEEEec
Q psy2343          92 KKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH---SEKVYHSTR  167 (396)
Q Consensus        92 ~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~---~~~V~l~~r  167 (396)
                      +++.||+||||||+  .|..|++|| ..   ++.+.+.... .-.+++|+|||+|.+|+|+|..++..   +.+|+++.|
T Consensus       148 ~~~~~d~lIIATGs--~p~~p~i~G~~~---~~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~  221 (486)
T TIGR01423       148 ERLQAEHILLATGS--WPQMLGIPGIEH---CISSNEAFYL-DEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYR  221 (486)
T ss_pred             eEEECCEEEEecCC--CCCCCCCCChhh---eechhhhhcc-ccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEec
Confidence            46899999999999  899999998 31   2233222221 12468999999999999999876654   789999998


Q ss_pred             cCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE
Q psy2343         168 RGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL  247 (396)
Q Consensus       168 ~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~  247 (396)
                      .+.. +|..    +         .         .+...                               +.+.+....|+
T Consensus       222 ~~~i-l~~~----d---------~---------~~~~~-------------------------------l~~~L~~~GI~  247 (486)
T TIGR01423       222 NNMI-LRGF----D---------S---------TLRKE-------------------------------LTKQLRANGIN  247 (486)
T ss_pred             CCcc-cccc----C---------H---------HHHHH-------------------------------HHHHHHHcCCE
Confidence            7632 1211    0         0         11111                               11112222333


Q ss_pred             e--cCCcceEeC-----CeEEecCCcEecCcEEEEccCCCCCCCCCC--ccccccc-CCccccccccccCCCCcEEEEec
Q psy2343         248 P--KDDIKNLNG-----NIVHFVDDTHIEVDTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNLDNIFFFGF  317 (396)
Q Consensus       248 ~--~~~i~~i~~-----~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~  317 (396)
                      +  ...+++++.     ..|.+.+|+.+++|.||+|||.+|+..++.  ...++.+ ++.+.+.+.+ .++.|+||++||
T Consensus       248 i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l-~Ts~~~IyA~GD  326 (486)
T TIGR01423       248 IMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFS-RTNVPNIYAIGD  326 (486)
T ss_pred             EEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCC-cCCCCCEEEeee
Confidence            3  334566642     246677888899999999999999988653  3444443 3456666554 689999999999


Q ss_pred             ccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         318 VNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       318 ~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      +.......+.|..||+.+|.++.|.
T Consensus       327 v~~~~~l~~~A~~qG~~aa~ni~g~  351 (486)
T TIGR01423       327 VTDRVMLTPVAINEGAAFVDTVFGN  351 (486)
T ss_pred             cCCCcccHHHHHHHHHHHHHHHhCC
Confidence            9876678889999999999999874

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.80  E-value=3e-18  Score=169.27  Aligned_cols=203  Identities=18%  Similarity=0.163  Sum_probs=132.1

Q ss_pred             CCeEEEEEccC--cEEEcCEEEEcccCCCCCC-CCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhc
Q psy2343          81 EDIWEVELSNG--KKKKYDFIAVCNGAQRVAR-YPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASH  157 (396)
Q Consensus        81 ~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~-~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~  157 (396)
                      .+...|+..+|  .++.||+||||||+  .|. .|.+++.- ..++.+.+..... -.+++|+|||+|.+|+|+|..+++
T Consensus       120 ~~~v~v~~~~g~~~~~~~d~lViATGs--~p~~~p~~~~~~-~~v~~~~~~~~~~-~~~~~vvIiGgG~iG~E~A~~l~~  195 (471)
T PRK06467        120 GNTLEVTGEDGKTTVIEFDNAIIAAGS--RPIQLPFIPHDD-PRIWDSTDALELK-EVPKRLLVMGGGIIGLEMGTVYHR  195 (471)
T ss_pred             CCEEEEecCCCceEEEEcCEEEEeCCC--CCCCCCCCCCCC-CcEEChHHhhccc-cCCCeEEEECCCHHHHHHHHHHHH
Confidence            45556666566  35899999999999  776 45555421 1244444333322 235899999999999999999999


Q ss_pred             CCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchh
Q psy2343         158 HSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQI  237 (396)
Q Consensus       158 ~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  237 (396)
                      .+.+|+++.+.+.. +|..    .         .         .+...                               +
T Consensus       196 ~G~~Vtlv~~~~~i-l~~~----d---------~---------~~~~~-------------------------------~  221 (471)
T PRK06467        196 LGSEVDVVEMFDQV-IPAA----D---------K---------DIVKV-------------------------------F  221 (471)
T ss_pred             cCCCEEEEecCCCC-CCcC----C---------H---------HHHHH-------------------------------H
Confidence            99999999987632 2211    0         0         11111                               1


Q ss_pred             hhcccCC-CeEecCCcceEe--CCe--EEecCC----cEecCcEEEEccCCCCCCCCCC--cccccccC-Cccccccccc
Q psy2343         238 LYHIGHG-DILPKDDIKNLN--GNI--VHFVDD----THIEVDTIIYATGYNRHFPFID--KEKLEWKL-GIPDLFIHIA  305 (396)
Q Consensus       238 ~~~i~~g-~i~~~~~i~~i~--~~~--v~~~dG----~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~~-~~~~l~~~~~  305 (396)
                      .+.+... ++.....+++++  ++.  +.+.++    +++++|.||+|+|++|+..++.  ...++++. +.+.+... +
T Consensus       222 ~~~l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~-~  300 (471)
T PRK06467        222 TKRIKKQFNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQ-C  300 (471)
T ss_pred             HHHHhhceEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCC-c
Confidence            1111111 222233455554  223  344443    3589999999999999988653  33445543 44555544 5


Q ss_pred             cCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         306 PRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       306 ~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      .++.|+||++||+.......+.|..||+.+|..+.|.
T Consensus       301 ~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~  337 (471)
T PRK06467        301 RTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGK  337 (471)
T ss_pred             ccCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCC
Confidence            7899999999999755567789999999999999874

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.80  E-value=3.6e-18  Score=169.06  Aligned_cols=222  Identities=15%  Similarity=0.095  Sum_probs=143.0

Q ss_pred             HHHcCCCCceEeCcEEEEEEEe-----CCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCCCCCCcccc-eeecccCCC
Q psy2343          59 AKKFDVYNHSIFNTEVINLEQY-----EDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPNYSGYFSGE-ILHSMDYKS  130 (396)
Q Consensus        59 ~~~~~l~~~i~~~t~V~~v~~~-----~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~-~~hs~~~~~  130 (396)
                      +++.++.  +.. .++..++..     ++.++|.+.+|  .++.||+||||||+  .|+.|+.. .+.+. ++++.+...
T Consensus       102 ~~~~gv~--~~~-g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs--~p~~~p~~-~~~~~~~~~~~~~~~  175 (472)
T PRK05976        102 LKKGKID--VFH-GIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGS--RPVELPGL-PFDGEYVISSDEALS  175 (472)
T ss_pred             HHhCCCE--EEE-EEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCC--CCCCCCCC-CCCCceEEcchHhhC
Confidence            3444554  333 355555543     33788887776  46899999999999  77643211 22332 445444433


Q ss_pred             CCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHh
Q psy2343         131 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLA  210 (396)
Q Consensus       131 ~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  210 (396)
                      .. ..+++|+|||+|.+|+|+|..+++.+.+|+++.|.+. ++|..    +         .         .+...     
T Consensus       176 ~~-~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~-il~~~----~---------~---------~~~~~-----  226 (472)
T PRK05976        176 LE-TLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR-ILPTE----D---------A---------ELSKE-----  226 (472)
T ss_pred             cc-ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc-cCCcC----C---------H---------HHHHH-----
Confidence            22 2468999999999999999999999999999998763 22211    0         0         11111     


Q ss_pred             cCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEe---CCeE---EecCCc--EecCcEEEEccCCC
Q psy2343         211 GFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLN---GNIV---HFVDDT--HIEVDTIIYATGYN  280 (396)
Q Consensus       211 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~---~~~v---~~~dG~--~~~~D~VI~aTG~~  280 (396)
                                                +.+.+....|++  ...+.+++   .+.+   .+.+|+  .+++|.||+|||.+
T Consensus       227 --------------------------l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~  280 (472)
T PRK05976        227 --------------------------VARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR  280 (472)
T ss_pred             --------------------------HHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence                                      111122223443  33456664   3332   235674  58999999999999


Q ss_pred             CCCCCCCc--ccccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         281 RHFPFIDK--EKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       281 ~~~~~l~~--~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      |+.+.+..  ..+..+++.+.+.+. +.++.|++|++||+.........|..||+.+|..+.|.
T Consensus       281 p~~~~l~l~~~~~~~~~g~i~Vd~~-l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~  343 (472)
T PRK05976        281 PNTEGIGLENTDIDVEGGFIQIDDF-CQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGK  343 (472)
T ss_pred             cCCCCCCchhcCceecCCEEEECCC-cccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence            99876532  223334455665554 46789999999999765567788999999999999875

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.79  E-value=4.7e-18  Score=167.52  Aligned_cols=204  Identities=15%  Similarity=0.138  Sum_probs=135.7

Q ss_pred             CCeEEEEEccCc-EEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCC
Q psy2343          81 EDIWEVELSNGK-KKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHS  159 (396)
Q Consensus        81 ~~~~~V~~~~g~-~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~  159 (396)
                      ++...|+.+++. ++.||+||||||+  .|..|++++.....++++.+.... .-..++|+|||+|.+|+|+|..+.+.+
T Consensus       117 ~~~v~v~~~~~~~~~~~d~lviATGs--~p~~~p~~~~~~~~v~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~g  193 (458)
T PRK06912        117 DHRVRVEYGDKEEVVDAEQFIIAAGS--EPTELPFAPFDGKWIINSKHAMSL-PSIPSSLLIVGGGVIGCEFASIYSRLG  193 (458)
T ss_pred             CCEEEEeeCCCcEEEECCEEEEeCCC--CCCCCCCCCCCCCeEEcchHHhCc-cccCCcEEEECCCHHHHHHHHHHHHcC
Confidence            555667665553 6899999999999  787776665211124554333322 223689999999999999999999999


Q ss_pred             CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhh
Q psy2343         160 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILY  239 (396)
Q Consensus       160 ~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  239 (396)
                      .+|+++.|.+.. +|..    ..                  .+...                               +.+
T Consensus       194 ~~Vtli~~~~~l-l~~~----d~------------------e~~~~-------------------------------l~~  219 (458)
T PRK06912        194 TKVTIVEMAPQL-LPGE----DE------------------DIAHI-------------------------------LRE  219 (458)
T ss_pred             CeEEEEecCCCc-Cccc----cH------------------HHHHH-------------------------------HHH
Confidence            999999987632 1110    00                  11111                               111


Q ss_pred             cccCCCeEe--cCCcceEeC--CeEEec-CCc--EecCcEEEEccCCCCCCCCCC--cccccccCCccccccccccCCCC
Q psy2343         240 HIGHGDILP--KDDIKNLNG--NIVHFV-DDT--HIEVDTIIYATGYNRHFPFID--KEKLEWKLGIPDLFIHIAPRNLD  310 (396)
Q Consensus       240 ~i~~g~i~~--~~~i~~i~~--~~v~~~-dG~--~~~~D~VI~aTG~~~~~~~l~--~~~~~~~~~~~~l~~~~~~~~~p  310 (396)
                      .+....|++  ...|.+++.  ..+.+. +|+  ++++|.||+|||.+|+..++.  ...+..+++++.+.+. +.++.|
T Consensus       220 ~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~-~~ts~~  298 (458)
T PRK06912        220 KLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEH-MQTNVP  298 (458)
T ss_pred             HHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCC-eecCCC
Confidence            111223443  345666653  234443 443  589999999999999987653  3344444455666555 467899


Q ss_pred             cEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         311 NIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       311 ~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      ++|++||+.......+.|..||+.+|..+.|.
T Consensus       299 ~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~  330 (458)
T PRK06912        299 HIYACGDVIGGIQLAHVAFHEGTTAALHASGE  330 (458)
T ss_pred             CEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence            99999999865567789999999999999874

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.79  E-value=3.8e-18  Score=172.42  Aligned_cols=239  Identities=18%  Similarity=0.151  Sum_probs=148.5

Q ss_pred             ChHHHHHHHHHHHHHcC--CCC-----ceEeCcEEEEEEEeC----CeEEEEE-ccCcEEEcCEEEEcccCCCCCCCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFD--VYN-----HSIFNTEVINLEQYE----DIWEVEL-SNGKKKKYDFIAVCNGAQRVARYPNY  114 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~--l~~-----~i~~~t~V~~v~~~~----~~~~V~~-~~g~~~~~d~vvvAtG~~~~p~~P~~  114 (396)
                      ..+.+.+|.+...+.+.  +..     .+..+++++.+....    +..+|.. .+++++.||+||||||+  .|.+|++
T Consensus       214 d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i~ad~lIIATGS--~P~~P~~  291 (659)
T PTZ00153        214 DITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGS--TPNIPDN  291 (659)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEEECCEEEEcCCC--CCCCCCC
Confidence            45677777777766532  110     011222334444321    2223443 35667899999999999  8888876


Q ss_pred             CCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCcccc
Q psy2343         115 SGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS  194 (396)
Q Consensus       115 ~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~  194 (396)
                      ++.....++++.+.... ...+++|+|||+|.+|+|+|..++..+++|+++.+.+.. +|..    ..            
T Consensus       292 ~~~~~~~V~ts~d~~~l-~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l-l~~~----d~------------  353 (659)
T PTZ00153        292 IEVDQKSVFTSDTAVKL-EGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL-LPLL----DA------------  353 (659)
T ss_pred             CCCCCCcEEehHHhhhh-hhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc-cccC----CH------------
Confidence            65222235555433322 224789999999999999999999999999999997642 1210    00            


Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC----eEE--ecC--
Q psy2343         195 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVH--FVD--  264 (396)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~--~~d--  264 (396)
                            .+.+.+.+.                              .+....|++  ...|.++++.    .|.  +.+  
T Consensus       354 ------eis~~l~~~------------------------------ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~  397 (659)
T PTZ00153        354 ------DVAKYFERV------------------------------FLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQ  397 (659)
T ss_pred             ------HHHHHHHHH------------------------------HhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccc
Confidence                  111111100                              011112333  3345555432    133  221  


Q ss_pred             -----C--------cEecCcEEEEccCCCCCCCCCC--cccccccCCccccccccccCC------CCcEEEEecccCcCc
Q psy2343         265 -----D--------THIEVDTIIYATGYNRHFPFID--KEKLEWKLGIPDLFIHIAPRN------LDNIFFFGFVNAAAG  323 (396)
Q Consensus       265 -----G--------~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~~~~~~l~~~~~~~~------~p~l~~iG~~~~~~~  323 (396)
                           +        +++++|.||+|||.+|+..+|.  ...+..+++.+.+.+++ .++      +|+||++||+.....
T Consensus       398 ~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~l-qTs~~~~~~v~~IYAiGDv~g~~~  476 (659)
T PTZ00153        398 TGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHL-RVLREDQEVYDNIFCIGDANGKQM  476 (659)
T ss_pred             cccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCC-CcCCCCCCCCCCEEEEEecCCCcc
Confidence                 1        2689999999999999988763  33444555556666554 443      699999999986666


Q ss_pred             hhhHHHHHHHHHHHHHhcc
Q psy2343         324 LGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       324 ~~~~ae~qa~~~a~~l~~~  342 (396)
                      +.+.|..||+.+|++|.|.
T Consensus       477 La~~A~~qg~~aa~ni~g~  495 (659)
T PTZ00153        477 LAHTASHQALKVVDWIEGK  495 (659)
T ss_pred             CHHHHHHHHHHHHHHHcCC
Confidence            7889999999999999875

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.79  E-value=6e-18  Score=166.97  Aligned_cols=203  Identities=14%  Similarity=0.067  Sum_probs=133.9

Q ss_pred             CCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCC-Cccc-ceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHh
Q psy2343          81 EDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSG-EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDAS  156 (396)
Q Consensus        81 ~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g-~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~  156 (396)
                      +.++.|.+.+|+  ++.||+||||||+  .|.  .+|| .+.+ .++++.+.... .-.+|+|+|||+|.+|+|+|..++
T Consensus       120 ~~~v~v~~~~g~~~~~~~d~lVIATGs--~p~--~ipg~~~~~~~~~~~~~~~~~-~~~~~~vvIIGgG~ig~E~A~~l~  194 (466)
T PRK06115        120 VGKVVVKAEDGSETQLEAKDIVIATGS--EPT--PLPGVTIDNQRIIDSTGALSL-PEVPKHLVVIGAGVIGLELGSVWR  194 (466)
T ss_pred             CCEEEEEcCCCceEEEEeCEEEEeCCC--CCC--CCCCCCCCCCeEECHHHHhCC-ccCCCeEEEECCCHHHHHHHHHHH
Confidence            455666666664  5899999999999  664  3555 3333 24554433332 234799999999999999999999


Q ss_pred             cCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCch
Q psy2343         157 HHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQ  236 (396)
Q Consensus       157 ~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  236 (396)
                      +.+.+|+++.+.+. ++|..    ..                  .+...                               
T Consensus       195 ~~G~~Vtlie~~~~-il~~~----d~------------------~~~~~-------------------------------  220 (466)
T PRK06115        195 RLGAQVTVVEYLDR-ICPGT----DT------------------ETAKT-------------------------------  220 (466)
T ss_pred             HcCCeEEEEeCCCC-CCCCC----CH------------------HHHHH-------------------------------
Confidence            99999999998753 12211    10                  01111                               


Q ss_pred             hhhcccCCCeEe--cCCcceEeC--CeE--Eec---CC--cEecCcEEEEccCCCCCCCCCC--cccccccCCccccccc
Q psy2343         237 ILYHIGHGDILP--KDDIKNLNG--NIV--HFV---DD--THIEVDTIIYATGYNRHFPFID--KEKLEWKLGIPDLFIH  303 (396)
Q Consensus       237 ~~~~i~~g~i~~--~~~i~~i~~--~~v--~~~---dG--~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~~~~~~l~~~  303 (396)
                      +.+.+....|++  ...++++++  +++  .+.   +|  +.+++|.||+|+|++|+...|.  ...+..+.+++.+.. 
T Consensus       221 l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~-  299 (466)
T PRK06115        221 LQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLAND-  299 (466)
T ss_pred             HHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECC-
Confidence            111111123333  345666653  233  332   23  4689999999999999987653  333444444454444 


Q ss_pred             cccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343         304 IAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       304 ~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      .+.++.|+||++||+.....+.+.|..||+.+|.++.+..
T Consensus       300 ~~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~  339 (466)
T PRK06115        300 HHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKA  339 (466)
T ss_pred             CeecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence            4578999999999998766778899999999999998753

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.78  E-value=9.7e-18  Score=164.57  Aligned_cols=192  Identities=16%  Similarity=0.152  Sum_probs=130.3

Q ss_pred             cEEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343          92 KKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus        92 ~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++.||+||||||+  .|+.|++||  ... .++++.++.... ..+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+
T Consensus       115 ~~~~~d~vViATGs--~~~~p~i~G~~~~~-~v~~~~~~~~~~-~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~  190 (438)
T PRK07251        115 IELTAETIVINTGA--VSNVLPIPGLADSK-HVYDSTGIQSLE-TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS  190 (438)
T ss_pred             EEEEcCEEEEeCCC--CCCCCCCCCcCCCC-cEEchHHHhcch-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            35899999999999  888899998  232 345554443332 247899999999999999999999999999999976


Q ss_pred             ceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe-
Q psy2343         170 YHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-  248 (396)
Q Consensus       170 ~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~-  248 (396)
                      .. +|..    ..                  .+...                               +.+.+....|++ 
T Consensus       191 ~~-l~~~----~~------------------~~~~~-------------------------------~~~~l~~~GI~i~  216 (438)
T PRK07251        191 TI-LPRE----EP------------------SVAAL-------------------------------AKQYMEEDGITFL  216 (438)
T ss_pred             cc-CCCC----CH------------------HHHHH-------------------------------HHHHHHHcCCEEE
Confidence            32 2211    00                  01000                               111111123333 


Q ss_pred             -cCCcceEeC--CeEE-ecCCcEecCcEEEEccCCCCCCCCCC--ccccccc-CCccccccccccCCCCcEEEEecccCc
Q psy2343         249 -KDDIKNLNG--NIVH-FVDDTHIEVDTIIYATGYNRHFPFID--KEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA  321 (396)
Q Consensus       249 -~~~i~~i~~--~~v~-~~dG~~~~~D~VI~aTG~~~~~~~l~--~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~  321 (396)
                       ...+.+++.  ..+. ..+|+++++|.||+|||.+|+.+.+.  ...+..+ ++.+.+.+. +.++.|+||++||+...
T Consensus       217 ~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~-~~t~~~~IyaiGD~~~~  295 (438)
T PRK07251        217 LNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDY-CQTSVPGVFAVGDVNGG  295 (438)
T ss_pred             cCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCC-cccCCCCEEEeeecCCC
Confidence             234566643  2333 34677899999999999999987654  2233333 345666554 57889999999999865


Q ss_pred             CchhhHHHHHHHHHHHHHhcc
Q psy2343         322 AGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       322 ~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      ....+.+..|++.++..+.+.
T Consensus       296 ~~~~~~a~~~~~~~~~~~~~~  316 (438)
T PRK07251        296 PQFTYISLDDFRIVFGYLTGD  316 (438)
T ss_pred             cccHhHHHHHHHHHHHHHcCC
Confidence            566778888999998888764

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.75  E-value=2.4e-17  Score=171.70  Aligned_cols=242  Identities=18%  Similarity=0.165  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY  128 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~  128 (396)
                      .++.++..+.+..+|+.  +++++..          .++.++.....||+||||||+. .+..+.++|.-. .++.+.++
T Consensus       587 ~e~l~~~ie~l~~~GVe--~~~g~~~----------d~~ve~l~~~gYDaVIIATGA~-~~~~l~I~G~~~-~v~~avef  652 (1012)
T TIGR03315       587 AESIQKDIELVKFHGVE--FKYGCSP----------DLTVAELKNQGYKYVILAIGAW-KHGPLRLEGGGE-RVLKSLEF  652 (1012)
T ss_pred             HHHHHHHHHHHHhcCcE--EEEeccc----------ceEhhhhhcccccEEEECCCCC-CCCCCCcCCCCc-ceeeHHHH
Confidence            45566666666677876  6666421          0122223335699999999994 344556776211 22322222


Q ss_pred             C----C--CCCCCCCeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343         129 K----S--PDQIRNKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM  200 (396)
Q Consensus       129 ~----~--~~~~~~k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~  200 (396)
                      .    .  .....||+|+|||+|++|+|+|..+.+.  +++|+++.|+....+|...     +                 
T Consensus       653 L~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~-----e-----------------  710 (1012)
T TIGR03315       653 LRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASR-----E-----------------  710 (1012)
T ss_pred             HHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCH-----H-----------------
Confidence            1    1  1224699999999999999999998875  4689999998643333210     0                 


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecC-CcceEe--CCeEEecCCc--EecCcEEEE
Q psy2343         201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD-DIKNLN--GNIVHFVDDT--HIEVDTIIY  275 (396)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~i~~i~--~~~v~~~dG~--~~~~D~VI~  275 (396)
                      .+.. ..+        .|+.          ...... ...+..++++... .+...+  +......+|+  .+++|.||+
T Consensus       711 El~~-ale--------eGVe----------~~~~~~-p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIv  770 (1012)
T TIGR03315       711 ELEE-ALE--------DGVD----------FKELLS-PESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIA  770 (1012)
T ss_pred             HHHH-HHH--------cCCE----------EEeCCc-eEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEE
Confidence            1111 010        0110          000000 0001122222110 000001  1112233454  489999999


Q ss_pred             ccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccccCC
Q psy2343         276 ATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKS  346 (396)
Q Consensus       276 aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~lp  346 (396)
                      |+|.+++..+++...+..+ ++.+.+......++.|+||++||+..+...+..|..||+.+|..|.+...+.
T Consensus       771 AiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~~~~  842 (1012)
T TIGR03315       771 AVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSREGLN  842 (1012)
T ss_pred             ecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccccCC
Confidence            9999999888876555543 3455555555678899999999997666678899999999999998765543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.75  E-value=3.4e-17  Score=173.48  Aligned_cols=250  Identities=18%  Similarity=0.165  Sum_probs=147.2

Q ss_pred             CCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc-EEEcCEEEEcccCCCCCCCCCCCCCccc
Q psy2343          42 YPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGAQRVARYPNYSGYFSG  120 (396)
Q Consensus        42 ~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~-~~~~d~vvvAtG~~~~p~~P~~~g~~~g  120 (396)
                      .|.|....++.+...+.++++|+.  +++++.|.      .  .++.++.. ...||+||||||+. .|+.|++||...+
T Consensus       473 ip~~rl~~e~~~~~~~~l~~~Gv~--~~~~~~vg------~--~~~~~~l~~~~~yDaViIATGa~-~pr~l~IpG~~l~  541 (1006)
T PRK12775        473 IPSFRLPRDIIDREVQRLVDIGVK--IETNKVIG------K--TFTVPQLMNDKGFDAVFLGVGAG-APTFLGIPGEFAG  541 (1006)
T ss_pred             CCccCCCHHHHHHHHHHHHHCCCE--EEeCCccC------C--ccCHHHHhhccCCCEEEEecCCC-CCCCCCCCCcCCC
Confidence            345545567888888888889987  88886541      1  12222211 24699999999983 5888889993223


Q ss_pred             ceeecccC--------------CCCCCCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCceeecCCCCCCChhHH
Q psy2343         121 EILHSMDY--------------KSPDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQW  185 (396)
Q Consensus       121 ~~~hs~~~--------------~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~~~~p~~~~~~~~~~~  185 (396)
                      .+++..+|              .+.....||+|+|||+|++|+|+|..+.+.+ +.|+++.|+....+|...        
T Consensus       542 gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~--------  613 (1006)
T PRK12775        542 QVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARI--------  613 (1006)
T ss_pred             CcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCH--------
Confidence            34444322              1222357999999999999999999988874 568999887643333210        


Q ss_pred             HHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc--cCCCeEecCCcce-----EeC-
Q psy2343         186 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDILPKDDIKN-----LNG-  257 (396)
Q Consensus       186 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i--~~g~i~~~~~i~~-----i~~-  257 (396)
                                     .-.+...        ..|+.          ........+.+  .+|+++-.. +.+     .+. 
T Consensus       614 ---------------~e~~~a~--------eeGI~----------~~~~~~p~~i~~~~~G~v~~v~-~~~~~l~~~d~~  659 (1006)
T PRK12775        614 ---------------EEIRHAK--------EEGID----------FFFLHSPVEIYVDAEGSVRGMK-VEEMELGEPDEK  659 (1006)
T ss_pred             ---------------HHHHHHH--------hCCCE----------EEecCCcEEEEeCCCCeEEEEE-EEEEEecccCCC
Confidence                           0000000        00100          00000011111  112222100 000     000 


Q ss_pred             -CeEEecCCc--EecCcEEEEccCCCCCCCCCCc-cccccc-CCcccccc----ccccCCCCcEEEEecccCcCchhhHH
Q psy2343         258 -NIVHFVDDT--HIEVDTIIYATGYNRHFPFIDK-EKLEWK-LGIPDLFI----HIAPRNLDNIFFFGFVNAAAGLGDGL  328 (396)
Q Consensus       258 -~~v~~~dG~--~~~~D~VI~aTG~~~~~~~l~~-~~~~~~-~~~~~l~~----~~~~~~~p~l~~iG~~~~~~~~~~~a  328 (396)
                       ......+|+  .+++|.||+|+|+.++..++.. ..+..+ .+.+.+.+    ..+.|+.|+||++||+..+...+..|
T Consensus       660 Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~~vv~A  739 (1006)
T PRK12775        660 GRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGATVILA  739 (1006)
T ss_pred             CCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCccHHHHH
Confidence             000111333  4899999999999999776543 234433 24444443    35688999999999998766677889


Q ss_pred             HHHHHHHHHHHhcccc
Q psy2343         329 RLQGQFIRSYIQAFIR  344 (396)
Q Consensus       329 e~qa~~~a~~l~~~~~  344 (396)
                      ..+|+.+|..+...+.
T Consensus       740 i~~Gr~AA~~I~~~L~  755 (1006)
T PRK12775        740 MGAGRRAARSIATYLR  755 (1006)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999988766554

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.75  E-value=2.4e-17  Score=157.11  Aligned_cols=232  Identities=19%  Similarity=0.204  Sum_probs=140.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEE----eCCeEEEEEcc--CcEEEcCEEEEcccCCCCCCCCCCCC-Cccc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ----YEDIWEVELSN--GKKKKYDFIAVCNGAQRVARYPNYSG-YFSG  120 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~----~~~~~~V~~~~--g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g  120 (396)
                      .+++...++++.++ ++.  +++++.|..+..    .++.|......  +..+.||+||||||+. .|..|++|| ...+
T Consensus        68 ~~~~~~~~~~l~~~-~i~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~-~~~~~~ipg~~~~~  143 (352)
T PRK12770         68 IERVREGVKELEEA-GVV--FHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW-KSRKLGIPGEDLPG  143 (352)
T ss_pred             HHHHHHHHHHHHhC-CeE--EecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCC-CCCcCCCCCccccC
Confidence            45566666666554 765  778888866533    12333322211  2236899999999983 477788888 4332


Q ss_pred             ceeecc---------cC-----CCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCc-EEEEeccCceeecCCCCCCChhHH
Q psy2343         121 EILHSM---------DY-----KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRGYHYYPKFIDGKPTPQW  185 (396)
Q Consensus       121 ~~~hs~---------~~-----~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~-V~l~~r~~~~~~p~~~~~~~~~~~  185 (396)
                       ++++.         .+     +....+++++|+|||+|.+|+|+|..++..+.+ |+++.|++.+..|.          
T Consensus       144 -v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~----------  212 (352)
T PRK12770        144 -VYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPA----------  212 (352)
T ss_pred             -ceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCC----------
Confidence             22211         11     111234689999999999999999999877665 99999875321110          


Q ss_pred             HHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC----e
Q psy2343         186 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----I  259 (396)
Q Consensus       186 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~----~  259 (396)
                              ..     ...+.+. .       .                           +|++  ...+.+++++    .
T Consensus       213 --------~~-----~~~~~l~-~-------~---------------------------gi~i~~~~~v~~i~~~~~~~~  244 (352)
T PRK12770        213 --------GK-----YEIERLI-A-------R---------------------------GVEFLELVTPVRIIGEGRVEG  244 (352)
T ss_pred             --------CH-----HHHHHHH-H-------c---------------------------CCEEeeccCceeeecCCcEeE
Confidence                    00     1111111 0       1                           1111  1112222211    1


Q ss_pred             EE------------------ec--CCcEecCcEEEEccCCCCCCCCCCc-cccccc-CCccccccccccCCCCcEEEEec
Q psy2343         260 VH------------------FV--DDTHIEVDTIIYATGYNRHFPFIDK-EKLEWK-LGIPDLFIHIAPRNLDNIFFFGF  317 (396)
Q Consensus       260 v~------------------~~--dG~~~~~D~VI~aTG~~~~~~~l~~-~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~  317 (396)
                      |.                  ..  +++.+++|.||+|+|++|+..+..+ ..+..+ ++.+.+... +.++.|+||++||
T Consensus       245 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~-~~t~~~~vyaiGD  323 (352)
T PRK12770        245 VELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEK-HMTSREGVFAAGD  323 (352)
T ss_pred             EEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCC-cccCCCCEEEEcc
Confidence            11                  11  2346899999999999998776654 334333 344555544 4678999999999


Q ss_pred             ccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343         318 VNAAAGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       318 ~~~~~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      +......+..|..||+.+|..+...+
T Consensus       324 ~~~~~~~~~~A~~~g~~aa~~i~~~l  349 (352)
T PRK12770        324 VVTGPSKIGKAIKSGLRAAQSIHEWL  349 (352)
T ss_pred             cccCcchHHHHHHHHHHHHHHHHHHH
Confidence            97655677789999999999887654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.75  E-value=3.7e-17  Score=161.03  Aligned_cols=242  Identities=19%  Similarity=0.187  Sum_probs=139.0

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM  126 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~  126 (396)
                      ..++.++....++.+|+.  ++++++|..        .++.++. ...||+||+|||+.. +..+.+|| ...| +++..
T Consensus       190 ~~~~~~~~~~~~~~~Gv~--~~~~~~v~~--------~~~~~~~-~~~~D~vilAtGa~~-~~~~~i~g~~~~g-V~~a~  256 (467)
T TIGR01318       190 DKAVLSRRREIFTAMGIE--FHLNCEVGR--------DISLDDL-LEDYDAVFLGVGTYR-SMRGGLPGEDAPG-VLQAL  256 (467)
T ss_pred             CHHHHHHHHHHHHHCCCE--EECCCEeCC--------ccCHHHH-HhcCCEEEEEeCCCC-CCcCCCCCcCCCC-cEEHH
Confidence            456778888888889987  888887632        1122221 246999999999932 23456777 4333 22211


Q ss_pred             c-----------CC---C--CCCCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCceeecCCCCCCChhHHHHhh
Q psy2343         127 D-----------YK---S--PDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQL  189 (396)
Q Consensus       127 ~-----------~~---~--~~~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~  189 (396)
                      +           ..   .  .....+|+|+|||+|++|+|+|..+.+.+ ++|+++.|++...+|...            
T Consensus       257 ~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~------------  324 (467)
T TIGR01318       257 PFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSR------------  324 (467)
T ss_pred             HHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCH------------
Confidence            1           00   0  11246899999999999999999988875 689999998754333220            


Q ss_pred             CccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc--cCCCeE---ec-CCcceEeCCe---E
Q psy2343         190 GNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDIL---PK-DDIKNLNGNI---V  260 (396)
Q Consensus       190 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i--~~g~i~---~~-~~i~~i~~~~---v  260 (396)
                                 .....+.        ..|+.          ...+....+..  ..|+++   +. ......+.++   .
T Consensus       325 -----------~e~~~~~--------~~GV~----------~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~  375 (467)
T TIGR01318       325 -----------REVANAR--------EEGVE----------FLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRP  375 (467)
T ss_pred             -----------HHHHHHH--------hcCCE----------EEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccc
Confidence                       0001000        00110          00000000110  011111   00 0000000000   0


Q ss_pred             EecCC--cEecCcEEEEccCCCCCC-CCCCcccccccC-Cccccc---cccccCCCCcEEEEecccCcCchhhHHHHHHH
Q psy2343         261 HFVDD--THIEVDTIIYATGYNRHF-PFIDKEKLEWKL-GIPDLF---IHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQ  333 (396)
Q Consensus       261 ~~~dG--~~~~~D~VI~aTG~~~~~-~~l~~~~~~~~~-~~~~l~---~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~  333 (396)
                      ...+|  ..+++|.||+|+|++++. .++....+.++. +.+.+.   ...+.++.|+||++||+......+..|..||+
T Consensus       376 ~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~~~~~Ai~~G~  455 (467)
T TIGR01318       376 VPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVVTAVAEGR  455 (467)
T ss_pred             eecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCccHHHHHHHHHH
Confidence            11122  258999999999999984 566554455533 444443   13456889999999999865556778999999


Q ss_pred             HHHHHHhccc
Q psy2343         334 FIRSYIQAFI  343 (396)
Q Consensus       334 ~~a~~l~~~~  343 (396)
                      .+|..+...+
T Consensus       456 ~aA~~i~~~L  465 (467)
T TIGR01318       456 QAAQGILDWL  465 (467)
T ss_pred             HHHHHHHHHh
Confidence            9999887543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG2495|consensus

Probab=99.74  E-value=2.8e-17  Score=151.28  Aligned_cols=267  Identities=15%  Similarity=0.185  Sum_probs=165.7

Q ss_pred             ceeeecCCCccccCCCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE--ccC----cEE
Q psy2343          21 SLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL--SNG----KKK   94 (396)
Q Consensus        21 ~~~~~~~~~~~~~~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~--~~g----~~~   94 (396)
                      ++.+.+|+..+.|.-. .|...-+-..-.-+.+-++..+.+-+-. .-.+..+.++|+++.++..+..  .++    -.+
T Consensus        80 dV~vVSPRnyFlFTPL-LpS~~vGTve~rSIvEPIr~i~r~k~~~-~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i  157 (491)
T KOG2495|consen   80 DVTVVSPRNYFLFTPL-LPSTTVGTVELRSIVEPIRAIARKKNGE-VKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVI  157 (491)
T ss_pred             ceEEeccccceEEeec-cCCccccceeehhhhhhHHHHhhccCCC-ceEEecccEeecccccEEEEeeeccCCCcceeee
Confidence            3677888888877633 1222112223456777888877765433 1234677788888766544443  233    247


Q ss_pred             EcCEEEEcccCCCCCCCCCCCC-----CcccceeecccCCCC-------CCC---------CCCeEEEEcCCCcHHHHHH
Q psy2343          95 KYDFIAVCNGAQRVARYPNYSG-----YFSGEILHSMDYKSP-------DQI---------RNKRVLVVGAGNSGCDIAV  153 (396)
Q Consensus        95 ~~d~vvvAtG~~~~p~~P~~~g-----~~~g~~~hs~~~~~~-------~~~---------~~k~VvVVG~G~sa~d~a~  153 (396)
                      .||+||+|+|+  .++.+.+||     .|-..+-++...+..       ..+         +--++||||||.||+|.|.
T Consensus       158 ~YDyLViA~GA--~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAa  235 (491)
T KOG2495|consen  158 GYDYLVIAVGA--EPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAA  235 (491)
T ss_pred             cccEEEEeccC--CCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehH
Confidence            89999999999  899999998     343344444333111       011         1136999999999999999


Q ss_pred             HHhcCC--------------CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCC
Q psy2343         154 DASHHS--------------EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGL  219 (396)
Q Consensus       154 ~l~~~~--------------~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (396)
                      ||+..-              -+||++.-.+.                           ....+..++...+.        
T Consensus       236 EL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~---------------------------iL~mFdkrl~~yae--------  280 (491)
T KOG2495|consen  236 ELADFIPEDLRKIYPELKKDIKVTLIEAADH---------------------------ILNMFDKRLVEYAE--------  280 (491)
T ss_pred             HHHHHHHHHHHHhhhcchhheEEEeeccchh---------------------------HHHHHHHHHHHHHH--------
Confidence            998741              13444443321                           00022222221111        


Q ss_pred             CCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCeEEecCC----cEecCcEEEEccCCCCCCCCCCcccccc
Q psy2343         220 KKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNIVHFVDD----THIEVDTIIYATGYNRHFPFIDKEKLEW  293 (396)
Q Consensus       220 ~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~v~~~dG----~~~~~D~VI~aTG~~~~~~~l~~~~~~~  293 (396)
                                         +.+.+-.|.+  .+.|..++++.++..++    +++++-++|||||-.+. |+........
T Consensus       281 -------------------~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i  340 (491)
T KOG2495|consen  281 -------------------NQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQI  340 (491)
T ss_pred             -------------------HHhhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcC
Confidence                               1112223443  44577888888776544    45899999999999986 4433221111


Q ss_pred             -c--CCccccccccccCCCCcEEEEecccCc---CchhhHHHHHHHHHHHHHhccccCC
Q psy2343         294 -K--LGIPDLFIHIAPRNLDNIFFFGFVNAA---AGLGDGLRLQGQFIRSYIQAFIRKS  346 (396)
Q Consensus       294 -~--~~~~~l~~~~~~~~~p~l~~iG~~~~~---~~~~~~ae~qa~~~a~~l~~~~~lp  346 (396)
                       +  ..++.+.+-+...+.+|||||||+...   .++.+.|+.||.++|+++....+..
T Consensus       341 ~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn~m~k~~  399 (491)
T KOG2495|consen  341 DEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFNKMGKGG  399 (491)
T ss_pred             CccCceeeeeeceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHHHHhccc
Confidence             1  225677788888899999999999732   3477899999999999997665544

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.74  E-value=1.3e-16  Score=163.68  Aligned_cols=243  Identities=18%  Similarity=0.175  Sum_probs=140.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM  126 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~  126 (396)
                      .+++.++....++.+|+.  ++++++|..        .++.++. ...||+|++|||++ .+..+.++| ...| +++..
T Consensus       376 ~~~~~~~~~~~~~~~Gv~--~~~~~~v~~--------~i~~~~~-~~~~DavilAtGa~-~~~~l~i~g~~~~G-v~~a~  442 (654)
T PRK12769        376 DKSLLARRREIFSAMGIE--FELNCEVGK--------DISLESL-LEDYDAVFVGVGTY-RSMKAGLPNEDAPG-VYDAL  442 (654)
T ss_pred             CHHHHHHHHHHHHHCCeE--EECCCEeCC--------cCCHHHH-HhcCCEEEEeCCCC-CCCCCCCCCCCCCC-eEEhH
Confidence            346666667777888876  788887621        1111111 13699999999984 344556777 4444 22111


Q ss_pred             --------------cCCC-C-CCCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCceeecCCCCCCChhHHHHhh
Q psy2343         127 --------------DYKS-P-DQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQL  189 (396)
Q Consensus       127 --------------~~~~-~-~~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~  189 (396)
                                    .+.+ . ..+.||+|+|||+|++|+|+|..+.+.+ ++|+++.|++...+|...            
T Consensus       443 ~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~------------  510 (654)
T PRK12769        443 PFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSK------------  510 (654)
T ss_pred             HHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCH------------
Confidence                          0111 1 1357899999999999999999877764 679999988643333210            


Q ss_pred             CccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc--cCCCeEecC----CcceEeCC---eE
Q psy2343         190 GNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDILPKD----DIKNLNGN---IV  260 (396)
Q Consensus       190 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i--~~g~i~~~~----~i~~i~~~---~v  260 (396)
                                 ...+.+.        ..|+.          ...+....+.+  ..|+++-..    .....+.+   ..
T Consensus       511 -----------~e~~~~~--------~~Gv~----------~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~  561 (654)
T PRK12769        511 -----------KEVKNAR--------EEGAN----------FEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRP  561 (654)
T ss_pred             -----------HHHHHHH--------HcCCe----------EEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcc
Confidence                       1111110        00100          00000011111  112221000    00000000   01


Q ss_pred             EecCCc--EecCcEEEEccCCCCCC-CCCCcccccccC-Cccccccc---cccCCCCcEEEEecccCcCchhhHHHHHHH
Q psy2343         261 HFVDDT--HIEVDTIIYATGYNRHF-PFIDKEKLEWKL-GIPDLFIH---IAPRNLDNIFFFGFVNAAAGLGDGLRLQGQ  333 (396)
Q Consensus       261 ~~~dG~--~~~~D~VI~aTG~~~~~-~~l~~~~~~~~~-~~~~l~~~---~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~  333 (396)
                      ....|+  .+++|.||+|+|+.++. .+++...++.+. +.+.+...   .+.|+.|+||++||+..+..++..|..||+
T Consensus       562 ~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr  641 (654)
T PRK12769        562 VPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGR  641 (654)
T ss_pred             eeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHHHHHHHHH
Confidence            111233  48999999999999874 566655565543 44444332   357899999999999876677788999999


Q ss_pred             HHHHHHhcccc
Q psy2343         334 FIRSYIQAFIR  344 (396)
Q Consensus       334 ~~a~~l~~~~~  344 (396)
                      .+|..+...+.
T Consensus       642 ~AA~~I~~~L~  652 (654)
T PRK12769        642 HAAQGIIDWLG  652 (654)
T ss_pred             HHHHHHHHHhC
Confidence            99998876543

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.73  E-value=1.5e-17  Score=162.72  Aligned_cols=237  Identities=15%  Similarity=0.143  Sum_probs=162.2

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM  126 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~  126 (396)
                      .+++.---.++.+++++.  .+.+.+|+.|++..+  .|++++|.+..||.+|+|||+  .|.+|++|| ..+| ++...
T Consensus        58 ~edi~l~~~dwy~~~~i~--L~~~~~v~~idr~~k--~V~t~~g~~~~YDkLilATGS--~pfi~PiPG~~~~~-v~~~R  130 (793)
T COG1251          58 AEDISLNRNDWYEENGIT--LYTGEKVIQIDRANK--VVTTDAGRTVSYDKLIIATGS--YPFILPIPGSDLPG-VFVYR  130 (793)
T ss_pred             HHHHhccchhhHHHcCcE--EEcCCeeEEeccCcc--eEEccCCcEeecceeEEecCc--cccccCCCCCCCCC-eeEEe
Confidence            355555556666777876  888999999998655  788889999999999999999  899999999 4333 45544


Q ss_pred             cCCCCCCC-----CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHH
Q psy2343         127 DYKSPDQI-----RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA  201 (396)
Q Consensus       127 ~~~~~~~~-----~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~  201 (396)
                      ++.+.+..     ..++-+|||+|.-|.|.|..|...+-+|++++-.+..              +.+            .
T Consensus       131 ~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l--------------Mer------------Q  184 (793)
T COG1251         131 TIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL--------------MER------------Q  184 (793)
T ss_pred             cHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchH--------------HHH------------h
Confidence            44443311     3456799999999999999999998888888765411              000            0


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceE----eCCeEEecCCcEecCcEEEEcc
Q psy2343         202 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNL----NGNIVHFVDDTHIEVDTIIYAT  277 (396)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i----~~~~v~~~dG~~~~~D~VI~aT  277 (396)
                      +.+.--+.+...++..|+                         ++.+....+++    ...+|.|+||+.+++|.||||+
T Consensus       185 LD~~ag~lL~~~le~~Gi-------------------------~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~  239 (793)
T COG1251         185 LDRTAGRLLRRKLEDLGI-------------------------KVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAV  239 (793)
T ss_pred             hhhHHHHHHHHHHHhhcc-------------------------eeecccchhhhhcCcceeeEeecCCCcccceeEEEec
Confidence            111000011111111111                         12221112222    1257999999999999999999


Q ss_pred             CCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCc----CchhhHHHHHHHHHHHHHhcccc
Q psy2343         278 GYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA----AGLGDGLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       278 G~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~----~~~~~~ae~qa~~~a~~l~~~~~  344 (396)
                      |++|+..+-...++..+. ++.+.++ +.+++|+||++|.+...    .++..-+--||+.+|..+.+...
T Consensus       240 GIrPn~ela~~aGlavnr-GIvvnd~-mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~  308 (793)
T COG1251         240 GIRPNDELAKEAGLAVNR-GIVVNDY-MQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEA  308 (793)
T ss_pred             ccccccHhHHhcCcCcCC-Ceeeccc-ccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCcc
Confidence            999998887777777665 4555544 58999999999998642    23444566789999998887744

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.72  E-value=1.4e-16  Score=157.36  Aligned_cols=241  Identities=16%  Similarity=0.130  Sum_probs=137.9

Q ss_pred             CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccce
Q psy2343          44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEI  122 (396)
Q Consensus        44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~  122 (396)
                      .|....++.+...+.+..+++.  +++++.|.. +       ++. +.....||+||+|||+. .|+.+.+|| ...| +
T Consensus       188 ~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~-~-------~~~-~~~~~~~d~vvlAtGa~-~~~~l~ipG~~~~g-V  254 (471)
T PRK12810        188 DFKLEKEVIDRRIELMEAEGIE--FRTNVEVGK-D-------ITA-EELLAEYDAVFLGTGAY-KPRDLGIPGRDLDG-V  254 (471)
T ss_pred             cccCCHHHHHHHHHHHHhCCcE--EEeCCEECC-c-------CCH-HHHHhhCCEEEEecCCC-CCCcCCCCCccCCC-c
Confidence            3333456677777777888887  888876631 1       111 11124799999999993 366777888 4443 2


Q ss_pred             eeccc-------------CCCCCCCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccCceeecCCCCCCChhHHHHh
Q psy2343         123 LHSMD-------------YKSPDQIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQ  188 (396)
Q Consensus       123 ~hs~~-------------~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~  188 (396)
                      ++..+             +.......+|+|+|||+|++|+|+|..+.+. +++|+...+.+   +|......+.     .
T Consensus       255 ~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~---~~~~~~~~~~-----~  326 (471)
T PRK12810        255 HFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP---MPPSRRNKNN-----P  326 (471)
T ss_pred             EEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC---CCcccccccc-----C
Confidence            22111             1112345799999999999999999887776 45788554332   1111000000     0


Q ss_pred             hCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCC-CeEecCCcceEeC--C-------
Q psy2343         189 LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG-DILPKDDIKNLNG--N-------  258 (396)
Q Consensus       189 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g-~i~~~~~i~~i~~--~-------  258 (396)
                      .|.+..      .+.                                 .......| .+.....+.++.+  +       
T Consensus       327 ~~~~~~------~~~---------------------------------~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~  367 (471)
T PRK12810        327 WPYWPM------KLE---------------------------------VSNAHEEGVEREFNVQTKEFEGENGKVTGVKV  367 (471)
T ss_pred             Ccccch------HHH---------------------------------HHHHHHcCCeEEeccCceEEEccCCEEEEEEE
Confidence            000000      000                                 00001111 1111223333321  1       


Q ss_pred             -eEEecC-------C--cEecCcEEEEccCCCCCC-CCCCcccccccC-CccccccccccCCCCcEEEEecccCcCchhh
Q psy2343         259 -IVHFVD-------D--THIEVDTIIYATGYNRHF-PFIDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGD  326 (396)
Q Consensus       259 -~v~~~d-------G--~~~~~D~VI~aTG~~~~~-~~l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~  326 (396)
                       .+.+.+       |  ..+++|.||+|+|++++. .+++...+..+. +.+.+.+..+.++.|+||++||+......+.
T Consensus       368 ~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~  447 (471)
T PRK12810        368 VRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVV  447 (471)
T ss_pred             EEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHH
Confidence             112222       2  358999999999999875 466655555543 4455443445789999999999986555667


Q ss_pred             HHHHHHHHHHHHHhcccc
Q psy2343         327 GLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       327 ~ae~qa~~~a~~l~~~~~  344 (396)
                      .|..||+.+|..+...+.
T Consensus       448 ~Av~~G~~AA~~i~~~L~  465 (471)
T PRK12810        448 WAIAEGRQAARAIDAYLM  465 (471)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            788999998887765543

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=2.1e-16  Score=141.56  Aligned_cols=211  Identities=19%  Similarity=0.213  Sum_probs=153.2

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe---CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccc
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGE  121 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~---~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~  121 (396)
                      .+.++..-|+.-+++|+++  +.--.+.+++.+.   ++..+|++.+|....++.||+|||+  +-+-..+||  +|+.+
T Consensus       264 eGpkl~~ale~Hv~~Y~vD--imn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGA--rWRn~nvPGE~e~rnK  339 (520)
T COG3634         264 EGPKLAAALEAHVKQYDVD--VMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGA--RWRNMNVPGEDEYRNK  339 (520)
T ss_pred             cchHHHHHHHHHHhhcCch--hhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCc--chhcCCCCchHHHhhC
Confidence            4778999999999999887  5545566777774   5678999999999999999999999  444557888  78777


Q ss_pred             eeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHH
Q psy2343         122 ILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA  201 (396)
Q Consensus       122 ~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~  201 (396)
                      -+..|..|+..-|+||+|+|||||+||+|.|.+|+...++||++.=.+.                      ++..    .
T Consensus       340 GVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e----------------------LkAD----~  393 (520)
T COG3634         340 GVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE----------------------LKAD----A  393 (520)
T ss_pred             CeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchh----------------------hhhH----H
Confidence            7889999999999999999999999999999999999999999864331                      1100    1


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecC--CcceEeCC-----eEEec---CCcE--ec
Q psy2343         202 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD--DIKNLNGN-----IVHFV---DDTH--IE  269 (396)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~--~i~~i~~~-----~v~~~---dG~~--~~  269 (396)
                      +.++.++.         +                        .++++..  .-+++.++     ++...   +|+.  ++
T Consensus       394 VLq~kl~s---------l------------------------~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~  440 (520)
T COG3634         394 VLQDKLRS---------L------------------------PNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLE  440 (520)
T ss_pred             HHHHHHhc---------C------------------------CCcEEEecceeeEEecCCceecceEEEeccCCceeEEE
Confidence            22111100         0                        1444332  23344443     34443   3433  67


Q ss_pred             CcEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCc
Q psy2343         270 VDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA  321 (396)
Q Consensus       270 ~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~  321 (396)
                      -+-|+.-.|.-|+..||+..+-....+.+.+.+ .-.+++|++|++||+...
T Consensus       441 LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~-~g~TsvpGvFAAGD~T~~  491 (520)
T COG3634         441 LEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDA-RGETNVPGVFAAGDCTTV  491 (520)
T ss_pred             eeeeEEEEecccChhHhhchhhcCcCccEEEec-CCCcCCCceeecCcccCC
Confidence            889999999999999999763222334454444 458999999999999753

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.71  E-value=3.9e-16  Score=159.43  Aligned_cols=240  Identities=16%  Similarity=0.204  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc-
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM-  126 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~-  126 (396)
                      +++.++....++.+|+.  ++++++|..        .++..+. ...||+|++|||+. .+..+.++| ...| ++++. 
T Consensus       360 ~~~~~~~~~~~~~~Gv~--~~~~~~v~~--------~~~~~~l-~~~~DaV~latGa~-~~~~~~i~g~~~~g-v~~a~~  426 (639)
T PRK12809        360 KTVLSQRREIFTAMGID--FHLNCEIGR--------DITFSDL-TSEYDAVFIGVGTY-GMMRADLPHEDAPG-VIQALP  426 (639)
T ss_pred             HHHHHHHHHHHHHCCeE--EEcCCccCC--------cCCHHHH-HhcCCEEEEeCCCC-CCCCCCCCCCccCC-cEeHHH
Confidence            46667777778888887  888887631        1222221 24699999999995 344566777 4444 22210 


Q ss_pred             ----------cCCC-----CCCCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccCceeecCCCCCCChhHHHHhhC
Q psy2343         127 ----------DYKS-----PDQIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLG  190 (396)
Q Consensus       127 ----------~~~~-----~~~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p  190 (396)
                                ....     .....+|+|+|||+|.+|+|+|..+.+. +++|+++.|+....+|..    + .       
T Consensus       427 ~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~----~-~-------  494 (639)
T PRK12809        427 FLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGS----R-K-------  494 (639)
T ss_pred             HHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC----H-H-------
Confidence                      0111     1234789999999999999999987766 578999999864333321    0 0       


Q ss_pred             ccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc--cCCCeEecCCcceE-----eCC---eE
Q psy2343         191 NKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDILPKDDIKNL-----NGN---IV  260 (396)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i--~~g~i~~~~~i~~i-----~~~---~v  260 (396)
                                .+. ...        ..|+.          ........+..  ..|+++... +.+.     +++   ..
T Consensus       495 ----------e~~-~a~--------~eGv~----------~~~~~~~~~i~~~~~g~v~~v~-~~~~~~~~~~~~g~~~~  544 (639)
T PRK12809        495 ----------EVV-NAR--------EEGVE----------FQFNVQPQYIACDEDGRLTAVG-LIRTAMGEPGPDGRRRP  544 (639)
T ss_pred             ----------HHH-HHH--------HcCCe----------EEeccCCEEEEECCCCeEEEEE-EEEEEecCcCCCCCccc
Confidence                      000 000        00110          00000000111  112222100 0000     000   01


Q ss_pred             EecCCc--EecCcEEEEccCCCCC-CCCCCcccccccC-Ccccccc---ccccCCCCcEEEEecccCcCchhhHHHHHHH
Q psy2343         261 HFVDDT--HIEVDTIIYATGYNRH-FPFIDKEKLEWKL-GIPDLFI---HIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQ  333 (396)
Q Consensus       261 ~~~dG~--~~~~D~VI~aTG~~~~-~~~l~~~~~~~~~-~~~~l~~---~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~  333 (396)
                      ....|+  .+++|.||+|+|++++ ..+++...++.+. +.+.+..   ..+.|+.|+||++||+..+..++..|..||+
T Consensus       545 ~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr  624 (639)
T PRK12809        545 RPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGR  624 (639)
T ss_pred             eecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchHHHHHHHHHH
Confidence            111233  4899999999999986 4566655555433 3343322   2357889999999999876667788999999


Q ss_pred             HHHHHHhccc
Q psy2343         334 FIRSYIQAFI  343 (396)
Q Consensus       334 ~~a~~l~~~~  343 (396)
                      .+|..+...+
T Consensus       625 ~AA~~i~~~l  634 (639)
T PRK12809        625 QAARDMLTLF  634 (639)
T ss_pred             HHHHHHHHHH
Confidence            9998887654

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.68  E-value=6.3e-16  Score=156.14  Aligned_cols=226  Identities=20%  Similarity=0.208  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEE-EEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEV-INLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM  126 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V-~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~  126 (396)
                      .++.+.-.+.+..+++.  +++++.+ ..+..+         . ....||+||+|||.. .+..+.++| ...| +++..
T Consensus       187 ~~~~~~~l~~~~~~Gv~--~~~~~~~~~~~~~~---------~-~~~~~D~Vi~AtG~~-~~~~~~i~g~~~~g-v~~~~  252 (564)
T PRK12771        187 REVLDAEIQRILDLGVE--VRLGVRVGEDITLE---------Q-LEGEFDAVFVAIGAQ-LGKRLPIPGEDAAG-VLDAV  252 (564)
T ss_pred             HHHHHHHHHHHHHCCCE--EEeCCEECCcCCHH---------H-HHhhCCEEEEeeCCC-CCCcCCCCCCccCC-cEEHH
Confidence            45555555566778876  7788765 332211         0 113589999999984 233446776 3333 22221


Q ss_pred             cCC-----CCCCCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343         127 DYK-----SPDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM  200 (396)
Q Consensus       127 ~~~-----~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~  200 (396)
                      .+.     ......+|+|+|||+|.+|+|++..+.+.+ ++|+++.|.+...+|...                       
T Consensus       253 ~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~-----------------------  309 (564)
T PRK12771        253 DFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHD-----------------------  309 (564)
T ss_pred             HHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCH-----------------------
Confidence            111     113456899999999999999999888775 789999987632222110                       


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEeCCe----------EEe----c---
Q psy2343         201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNI----------VHF----V---  263 (396)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~~~----------v~~----~---  263 (396)
                      .......        ..|+                         ++.....+.++.++.          +.+    .   
T Consensus       310 ~~~~~a~--------~~GV-------------------------ki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~  356 (564)
T PRK12771        310 EEIEEAL--------REGV-------------------------EINWLRTPVEIEGDENGATGLRVITVEKMELDEDGR  356 (564)
T ss_pred             HHHHHHH--------HcCC-------------------------EEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCC
Confidence            0000000        0000                         111111222222110          110    1   


Q ss_pred             ----CCc--EecCcEEEEccCCCCCCCCCCc-ccccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHH
Q psy2343         264 ----DDT--HIEVDTIIYATGYNRHFPFIDK-EKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIR  336 (396)
Q Consensus       264 ----dG~--~~~~D~VI~aTG~~~~~~~l~~-~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a  336 (396)
                          +|+  .+++|.||+|+|+.++.++++. ..+..+++.+.+....+.++.|+||++||+..+...+..|..||+.+|
T Consensus       357 ~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA  436 (564)
T PRK12771        357 PSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAA  436 (564)
T ss_pred             eeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHHHH
Confidence                232  5899999999999999888874 344434466666666778999999999999876667788899999998


Q ss_pred             HHHhcccc
Q psy2343         337 SYIQAFIR  344 (396)
Q Consensus       337 ~~l~~~~~  344 (396)
                      ..+...+.
T Consensus       437 ~~i~~~L~  444 (564)
T PRK12771        437 RNIDAFLG  444 (564)
T ss_pred             HHHHHHHc
Confidence            87755543

>PRK13984 putative oxidoreductase; Provisional

Probab=99.65  E-value=2e-15  Score=153.94  Aligned_cols=240  Identities=15%  Similarity=0.177  Sum_probs=134.8

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM  126 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~  126 (396)
                      .+++..+....++++++.  ++++++|..        .++.++. ...||+||+|||+. .|+.+++|| ...+ ++++.
T Consensus       332 ~~~~~~~~~~~~~~~gv~--~~~~~~v~~--------~~~~~~~-~~~yD~vilAtGa~-~~r~l~i~G~~~~g-v~~a~  398 (604)
T PRK13984        332 PDEALDKDIAFIEALGVK--IHLNTRVGK--------DIPLEEL-REKHDAVFLSTGFT-LGRSTRIPGTDHPD-VIQAL  398 (604)
T ss_pred             CHHHHHHHHHHHHHCCcE--EECCCEeCC--------cCCHHHH-HhcCCEEEEEcCcC-CCccCCCCCcCCcC-eEeHH
Confidence            455666666677788876  888887732        0111111 25799999999983 467778888 3333 23322


Q ss_pred             cCCC---------C-CCCCCCeEEEEcCCCcHHHHHHHHhcCC------CcEEEEecc-CceeecCCCCCCChhHHHHhh
Q psy2343         127 DYKS---------P-DQIRNKRVLVVGAGNSGCDIAVDASHHS------EKVYHSTRR-GYHYYPKFIDGKPTPQWMLQL  189 (396)
Q Consensus       127 ~~~~---------~-~~~~~k~VvVVG~G~sa~d~a~~l~~~~------~~V~l~~r~-~~~~~p~~~~~~~~~~~~~~~  189 (396)
                      ++..         . ....+|+|+|||||.+|+|+|..+++.+      .+|+++..+ ....+|.              
T Consensus       399 ~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~--------------  464 (604)
T PRK13984        399 PLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPA--------------  464 (604)
T ss_pred             HHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCC--------------
Confidence            2211         1 1234799999999999999999998763      367877532 2111111              


Q ss_pred             CccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc-cCCCeEecC--CcceE-eCCe---EEe
Q psy2343         190 GNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI-GHGDILPKD--DIKNL-NGNI---VHF  262 (396)
Q Consensus       190 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i-~~g~i~~~~--~i~~i-~~~~---v~~  262 (396)
                        ..       .......+        .|+.          ...+....+.. .+|+++...  .+... +.++   ...
T Consensus       465 --~~-------~e~~~~~~--------~GV~----------i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~  517 (604)
T PRK13984        465 --DM-------EEIEEGLE--------EGVV----------IYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKF  517 (604)
T ss_pred             --CH-------HHHHHHHH--------cCCE----------EEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCcccee
Confidence              00       00010000        0110          00000000110 122222100  00000 0001   111


Q ss_pred             cC--CcEecCcEEEEccCCCCCCCCCCcc---cccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHH
Q psy2343         263 VD--DTHIEVDTIIYATGYNRHFPFIDKE---KLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRS  337 (396)
Q Consensus       263 ~d--G~~~~~D~VI~aTG~~~~~~~l~~~---~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~  337 (396)
                      .+  +..+++|.||+|+|++++..+|...   .+..+.+.+.+.+ .+.|+.|+||++||+.... ....|..+|+.+|.
T Consensus       518 ~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~-~~~Ts~~gVfAaGD~~~~~-~~v~Ai~~G~~AA~  595 (604)
T PRK13984        518 DESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNE-YGQTSIPWLFAGGDIVHGP-DIIHGVADGYWAAE  595 (604)
T ss_pred             cCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCC-CCccCCCCEEEecCcCCch-HHHHHHHHHHHHHH
Confidence            12  2358999999999999998887642   2333445555554 4678999999999998654 44678999999999


Q ss_pred             HHhccc
Q psy2343         338 YIQAFI  343 (396)
Q Consensus       338 ~l~~~~  343 (396)
                      .|...+
T Consensus       596 ~I~~~L  601 (604)
T PRK13984        596 GIDMYL  601 (604)
T ss_pred             HHHHHh
Confidence            887654

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.64  E-value=7.4e-15  Score=145.33  Aligned_cols=264  Identities=15%  Similarity=0.131  Sum_probs=142.0

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccc
Q psy2343          43 PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGE  121 (396)
Q Consensus        43 ~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~  121 (396)
                      |.|....++..+..+.++.+++.  +++++.|..        .++. ++....||+||+|||.. .|..|.++| ...| 
T Consensus       187 p~~~~~~~~~~~~~~~~~~~Gv~--~~~~~~v~~--------~~~~-~~~~~~~d~VilAtGa~-~~~~l~i~G~~~~g-  253 (485)
T TIGR01317       187 PNMKLDKAIVDRRIDLLSAEGID--FVTNTEIGV--------DISA-DELKEQFDAVVLAGGAT-KPRDLPIPGRELKG-  253 (485)
T ss_pred             CCccCCHHHHHHHHHHHHhCCCE--EECCCEeCC--------ccCH-HHHHhhCCEEEEccCCC-CCCcCCCCCcCCCC-
Confidence            33433455666666777778887  888887631        1111 11125699999999993 377788888 4444 


Q ss_pred             eeeccc--------CC-------CCCCCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccCceeecCCCCCCChhHH
Q psy2343         122 ILHSMD--------YK-------SPDQIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRGYHYYPKFIDGKPTPQW  185 (396)
Q Consensus       122 ~~hs~~--------~~-------~~~~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~~~~~p~~~~~~~~~~~  185 (396)
                      +....+        ..       ......+|+|+|||+|++|+|+|..+.+. +++|+++.+.+... +....    +. 
T Consensus       254 V~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~-~~~~~----~~-  327 (485)
T TIGR01317       254 IHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPP-EARAK----DN-  327 (485)
T ss_pred             cEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCCh-hhccc----cc-
Confidence            221110        01       01125789999999999999998777665 67899998764211 00000    00 


Q ss_pred             HHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccC--CCeEecC--Ccc-eEeCCe-
Q psy2343         186 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH--GDILPKD--DIK-NLNGNI-  259 (396)
Q Consensus       186 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~--g~i~~~~--~i~-~i~~~~-  259 (396)
                        .+|.+-.. .+.....+...+       ..|+. +        ...+....+.+.+  |+++-..  .++ ..++++ 
T Consensus       328 --~~~~~~~~-~e~~~a~~e~~~-------~~gv~-~--------~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr  388 (485)
T TIGR01317       328 --PWPEWPRV-YRVDYAHEEAAA-------HYGRD-P--------REYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGK  388 (485)
T ss_pred             --CCCccchh-hhhHHHHHhhhh-------hcCcc-c--------eEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCC
Confidence              01111000 000000011000       00000 0        0000011111111  1221000  000 000111 


Q ss_pred             --EEecCCc--EecCcEEEEccCCC-CCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHH
Q psy2343         260 --VHFVDDT--HIEVDTIIYATGYN-RHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQ  333 (396)
Q Consensus       260 --v~~~dG~--~~~~D~VI~aTG~~-~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~  333 (396)
                        .....|+  ++++|.||+|+|.. ++.++++...++.+ .+.+......+.|+.|+||++||+.........|..||+
T Consensus       389 ~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~  468 (485)
T TIGR01317       389 WQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGR  468 (485)
T ss_pred             ccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHH
Confidence              1111222  58999999999996 77788876656543 344544555678999999999999765566777899999


Q ss_pred             HHHHHHhcccc
Q psy2343         334 FIRSYIQAFIR  344 (396)
Q Consensus       334 ~~a~~l~~~~~  344 (396)
                      .+|..+...+.
T Consensus       469 ~AA~~i~~~L~  479 (485)
T TIGR01317       469 KAAAAVDRYLM  479 (485)
T ss_pred             HHHHHHHHHHh
Confidence            99988766543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.58  E-value=5.9e-14  Score=137.29  Aligned_cols=115  Identities=24%  Similarity=0.298  Sum_probs=78.3

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccc
Q psy2343          43 PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGE  121 (396)
Q Consensus        43 ~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~  121 (396)
                      |+++..+.+.+++.+++++.++.  ++.|++|-.        .++.++.. ..||+||+|||.. .++.+.+|| ...| 
T Consensus        73 P~~~~~k~v~~~~~~~~~~~~v~--~~~nv~vg~--------dvtl~~L~-~~yDaVIlAtGa~-~~~~l~IpG~d~~g-  139 (491)
T PLN02852         73 PDHPETKNVTNQFSRVATDDRVS--FFGNVTLGR--------DVSLSELR-DLYHVVVLAYGAE-SDRRLGIPGEDLPG-  139 (491)
T ss_pred             CCcchhHHHHHHHHHHHHHCCeE--EEcCEEECc--------cccHHHHh-hhCCEEEEecCCC-CCCCCCCCCCCCCC-
Confidence            56666677888888888887665  555655421        23443333 4699999999993 235667888 4333 


Q ss_pred             eeecccCC----------CC--CCCCCCeEEEEcCCCcHHHHHHHHhcC---------------------CCcEEEEecc
Q psy2343         122 ILHSMDYK----------SP--DQIRNKRVLVVGAGNSGCDIAVDASHH---------------------SEKVYHSTRR  168 (396)
Q Consensus       122 ~~hs~~~~----------~~--~~~~~k~VvVVG~G~sa~d~a~~l~~~---------------------~~~V~l~~r~  168 (396)
                      ++...++.          ..  ....+++|+|||+|++|+|+|..|++.                     +++|+++.||
T Consensus       140 V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RR  219 (491)
T PLN02852        140 VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRR  219 (491)
T ss_pred             eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcC
Confidence            33333321          11  123689999999999999999998763                     5789999999


Q ss_pred             Cc
Q psy2343         169 GY  170 (396)
Q Consensus       169 ~~  170 (396)
                      +.
T Consensus       220 g~  221 (491)
T PLN02852        220 GP  221 (491)
T ss_pred             Ch
Confidence            84

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.54  E-value=4.8e-13  Score=142.82  Aligned_cols=225  Identities=12%  Similarity=0.080  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEE---------c---cC--cEEEcCEEEEcccCCCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVEL---------S---NG--KKKKYDFIAVCNGAQRVARYPN  113 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~---------~---~g--~~~~~d~vvvAtG~~~~p~~P~  113 (396)
                      .++.+-+...++.+ ++.  ++.+++|..+........+..         .   .+  .++.+|+||||||+  .++.|+
T Consensus       215 ~~~~~~~~~~l~~~~~v~--v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa--~~r~~p  290 (985)
T TIGR01372       215 ADWAAATVAELTAMPEVT--LLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGA--HERPLV  290 (985)
T ss_pred             HHHHHHHHHHHhcCCCcE--EEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCC--CCcCCC
Confidence            34434444444444 355  778899988754211111110         0   01  14789999999999  788888


Q ss_pred             CCC-Ccccceeec---ccCCCC-CCCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCceeecCCCCCCChhHHHH
Q psy2343         114 YSG-YFSGEILHS---MDYKSP-DQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWML  187 (396)
Q Consensus       114 ~~g-~~~g~~~hs---~~~~~~-~~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~~~~p~~~~~~~~~~~~~  187 (396)
                      +|| ...| ++..   ..+... ....+++|+|||+|.+|+|+|..|++.+ +.|+++.+++.. .              
T Consensus       291 ipG~~~pg-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-~--------------  354 (985)
T TIGR01372       291 FANNDRPG-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-S--------------  354 (985)
T ss_pred             CCCCCCCC-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-h--------------
Confidence            888 4444 2222   122222 2347899999999999999999999987 557777765410 0              


Q ss_pred             hhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCC----eEE
Q psy2343         188 QLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGN----IVH  261 (396)
Q Consensus       188 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~----~v~  261 (396)
                             .     .+.                                   +.++...|++.  ..+.++.++    +|.
T Consensus       355 -------~-----~l~-----------------------------------~~L~~~GV~i~~~~~v~~i~g~~~v~~V~  387 (985)
T TIGR01372       355 -------P-----EAR-----------------------------------AEARELGIEVLTGHVVAATEGGKRVSGVA  387 (985)
T ss_pred             -------H-----HHH-----------------------------------HHHHHcCCEEEcCCeEEEEecCCcEEEEE
Confidence                   0     111                                   11111123332  335555443    355


Q ss_pred             ec----CCcEecCcEEEEccCCCCCCCCCCcccc--cccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHH
Q psy2343         262 FV----DDTHIEVDTIIYATGYNRHFPFIDKEKL--EWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFI  335 (396)
Q Consensus       262 ~~----dG~~~~~D~VI~aTG~~~~~~~l~~~~~--~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~  335 (396)
                      +.    +++++++|.|++++|++|+..++.....  .|++.. ..+  .-.++.|+||++||+.... ....|..+++.+
T Consensus       388 l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~-~~~--~~~t~v~gVyaaGD~~g~~-~~~~A~~eG~~A  463 (985)
T TIGR01372       388 VARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAI-AAF--LPGDAVQGCILAGAANGLF-GLAAALADGAAA  463 (985)
T ss_pred             EEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeecccc-Cce--ecCCCCCCeEEeeccCCcc-CHHHHHHHHHHH
Confidence            54    4556899999999999999887654332  333221 111  1136689999999987543 456689999999


Q ss_pred             HHHHhcccc
Q psy2343         336 RSYIQAFIR  344 (396)
Q Consensus       336 a~~l~~~~~  344 (396)
                      |..+...+.
T Consensus       464 a~~i~~~lg  472 (985)
T TIGR01372       464 GAAAARAAG  472 (985)
T ss_pred             HHHHHHHcC
Confidence            988765554

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG4716|consensus

Probab=99.52  E-value=3.5e-13  Score=120.70  Aligned_cols=238  Identities=17%  Similarity=0.190  Sum_probs=140.3

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCc-EEEEEEEe---CCeEEEEE--ccCc--EEEcCEEEEcccCCCCCCCCCCCC--
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNT-EVINLEQY---EDIWEVEL--SNGK--KKKYDFIAVCNGAQRVARYPNYSG--  116 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t-~V~~v~~~---~~~~~V~~--~~g~--~~~~d~vvvAtG~~~~p~~P~~~g--  116 (396)
                      ....+.+-.++-.+..+---++.++. +|.-+.--   -+..++..  .+|+  .++++.+|||||.  +|++|+|||  
T Consensus       105 dW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~--RPrYp~IpG~~  182 (503)
T KOG4716|consen  105 DWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGL--RPRYPDIPGAK  182 (503)
T ss_pred             cHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecC--CCCCCCCCCce
Confidence            34556666666665554332233322 23333221   22233333  3343  3789999999999  999999999  


Q ss_pred             CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccCh
Q psy2343         117 YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK  196 (396)
Q Consensus       117 ~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~  196 (396)
                      ++   .+.|.++-...-..| +-+|||+|..|.|+|..|+..+-+|++..|+=.      +.                  
T Consensus       183 Ey---~ITSDDlFsl~~~PG-kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~------Lr------------------  234 (503)
T KOG4716|consen  183 EY---GITSDDLFSLPYEPG-KTLVVGAGYVALECAGFLKGFGYDVTVMVRSIL------LR------------------  234 (503)
T ss_pred             ee---eecccccccccCCCC-ceEEEccceeeeehhhhHhhcCCCcEEEEEEee------cc------------------
Confidence            33   356655544433345 578999999999999999999999999999731      11                  


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEeCCe--EEec-----CCcEec
Q psy2343         197 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNI--VHFV-----DDTHIE  269 (396)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~~~--v~~~-----dG~~~~  269 (396)
                          .+.+.+.......++.+|++-     ...   .              +-..|+.++.+.  |...     .+-+.+
T Consensus       235 ----GFDqdmae~v~~~m~~~Gikf-----~~~---~--------------vp~~Veq~~~g~l~v~~k~t~t~~~~~~~  288 (503)
T KOG4716|consen  235 ----GFDQDMAELVAEHMEERGIKF-----LRK---T--------------VPERVEQIDDGKLRVFYKNTNTGEEGEEE  288 (503)
T ss_pred             ----cccHHHHHHHHHHHHHhCCce-----eec---c--------------cceeeeeccCCcEEEEeecccccccccch
Confidence                222222222222222333310     000   0              001233333332  1111     122357


Q ss_pred             CcEEEEccCCCCCCCC--CCcccccc--cCCccccccccccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhc
Q psy2343         270 VDTIIYATGYNRHFPF--IDKEKLEW--KLGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQA  341 (396)
Q Consensus       270 ~D~VI~aTG~~~~~~~--l~~~~~~~--~~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~  341 (396)
                      .|.|+||.|..+...-  |+..+.+.  ..+.++ ......+++|.+|++||+... .-+.|.|.+.+|++|+.|-+
T Consensus       289 ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~-v~~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~  364 (503)
T KOG4716|consen  289 YDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIP-VDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFA  364 (503)
T ss_pred             hhhhhhhhccccchhhcCCCccceeecccCCccc-cChHHhcCCCceEEecceecCCcccchhhhhhchHHHHHHhc
Confidence            9999999999976543  33333333  223333 445568899999999998653 45778899999999987743

>KOG1335|consensus

Probab=99.49  E-value=3e-13  Score=123.07  Aligned_cols=280  Identities=15%  Similarity=0.127  Sum_probs=161.8

Q ss_pred             CCCCccccccCCCCCCCCCCceeeecCCCccccC---CCCCC--CCCCCCCChHHHHHHHHHHHHHc--CCCCceEe-Cc
Q psy2343           1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVP---DYPMP--DNYPVYPNHSMMLDYLRSYAKKF--DVYNHSIF-NT   72 (396)
Q Consensus         1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~---~~p~p--~~~~~~p~~~~~~~Yl~~~~~~~--~l~~~i~~-~t   72 (396)
                      +++.+||++-+.    .|.||-.+-..+.+|..-   +|.--  +-.+--...+.+++-....++++  ++.  -.| ..
T Consensus        70 kr~~LGGTcLnv----GcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~dl~~~~~~k~~~vk~Lt~gi~--~lfkkn  143 (506)
T KOG1335|consen   70 KRGTLGGTCLNV----GCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLDLQAMMKAKDNAVKQLTGGIE--NLFKKN  143 (506)
T ss_pred             ccCccCceeeec----cccccHHHhhhhHHHHHHhhhHHHhcCccccceecCHHHHHHHHHHHHHHHhhHHH--HHhhhc
Confidence            467899999876    366655443333333211   11100  00111223445555555555543  121  111 22


Q ss_pred             EEEEEEEe-----CCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCCCCCCCCeEEEEcC
Q psy2343          73 EVINLEQY-----EDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGA  144 (396)
Q Consensus        73 ~V~~v~~~-----~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~  144 (396)
                      +|+.+.--     ..+.++...+|.  .+.++++|||||+-    .+++|| .-.++.+-|++---....-.|+.+|||+
T Consensus       144 kV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSe----V~~~PGI~IDekkIVSStgALsL~~vPk~~~viG~  219 (506)
T KOG1335|consen  144 KVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSE----VTPFPGITIDEKKIVSSTGALSLKEVPKKLTVIGA  219 (506)
T ss_pred             CeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCc----cCCCCCeEecCceEEecCCccchhhCcceEEEEcC
Confidence            44444321     334445555554  48899999999982    345677 5555555555444444556789999999


Q ss_pred             CCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q psy2343         145 GNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDH  224 (396)
Q Consensus       145 G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  224 (396)
                      |..|.|+..-..+.+.+||++.-.+... |.                 +..     .+.+.+.+.+..    .|+     
T Consensus       220 G~IGLE~gsV~~rLGseVT~VEf~~~i~-~~-----------------mD~-----Eisk~~qr~L~k----Qgi-----  267 (506)
T KOG1335|consen  220 GYIGLEMGSVWSRLGSEVTVVEFLDQIG-GV-----------------MDG-----EISKAFQRVLQK----QGI-----  267 (506)
T ss_pred             ceeeeehhhHHHhcCCeEEEEEehhhhc-cc-----------------cCH-----HHHHHHHHHHHh----cCc-----
Confidence            9999999999999999999997543211 10                 101     111111111110    000     


Q ss_pred             CCCcccCccCchhhhcccCCCeEecCCcceEeC--C-e--EEec---CCc--EecCcEEEEccCCCCCCCCCCc--cccc
Q psy2343         225 PLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N-I--VHFV---DDT--HIEVDTIIYATGYNRHFPFIDK--EKLE  292 (396)
Q Consensus       225 ~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~--~-~--v~~~---dG~--~~~~D~VI~aTG~~~~~~~l~~--~~~~  292 (396)
                                          +..+.+.+...+.  + .  |.+.   +|+  +++||+++.|+|.+|-..-|+-  -++.
T Consensus       268 --------------------kF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~  327 (506)
T KOG1335|consen  268 --------------------KFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIE  327 (506)
T ss_pred             --------------------eeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccc
Confidence                                2223334444432  1 2  3332   333  4899999999999975544432  2233


Q ss_pred             ccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343         293 WKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       293 ~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      .|. +++++ ..-|.+.+|+||+|||+..+..+.+-||.|+..+...+.|.-
T Consensus       328 ~D~r~rv~v-~~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~  378 (506)
T KOG1335|consen  328 LDKRGRVIV-NTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGH  378 (506)
T ss_pred             cccccceec-cccccccCCceEEecccCCcchhhhhhhhhchhheeeecccC
Confidence            333 44444 445688999999999998877788899999999999998773

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.46  E-value=6.6e-13  Score=129.33  Aligned_cols=221  Identities=17%  Similarity=0.157  Sum_probs=145.6

Q ss_pred             HHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCC----
Q psy2343          60 KKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIR----  135 (396)
Q Consensus        60 ~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~----  135 (396)
                      ...++.  ++.+++|.+++....  +|.+.++ ++.||++++|||.  .|..++  +.+...+++.....+...++    
T Consensus        64 ~~~~i~--~~~~~~v~~id~~~~--~v~~~~g-~~~yd~LvlatGa--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  134 (415)
T COG0446          64 RATGID--VRTGTEVTSIDPENK--VVLLDDG-EIEYDYLVLATGA--RPRPPP--ISDWEGVVTLRLREDAEALKGGAE  134 (415)
T ss_pred             HhhCCE--EeeCCEEEEecCCCC--EEEECCC-cccccEEEEcCCC--cccCCC--ccccCceEEECCHHHHHHHHHHHh
Confidence            455665  888999999997655  5666677 6889999999999  777765  31111122222222222111    


Q ss_pred             -CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343         136 -NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG  214 (396)
Q Consensus       136 -~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  214 (396)
                       -++|+|||+|..|+++|..+.+.+.+|+++...+...-+ .                +..     .+.           
T Consensus       135 ~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~-~----------------~~~-----~~~-----------  181 (415)
T COG0446         135 PPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ-L----------------LDP-----EVA-----------  181 (415)
T ss_pred             ccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh-h----------------hhH-----HHH-----------
Confidence             479999999999999999999999999999987632110 0                000     111           


Q ss_pred             CCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeCCe-------EEecCCcEecCcEEEEccCCCCCCCC
Q psy2343         215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGNI-------VHFVDDTHIEVDTIIYATGYNRHFPF  285 (396)
Q Consensus       215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~~~-------v~~~dG~~~~~D~VI~aTG~~~~~~~  285 (396)
                                          ..+.+.+....|+  ....+.+++.+.       +...++..+++|.+++++|.+++..+
T Consensus       182 --------------------~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l  241 (415)
T COG0446         182 --------------------EELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVL  241 (415)
T ss_pred             --------------------HHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHH
Confidence                                1111122222233  334556665432       67788899999999999999998555


Q ss_pred             CCccc--ccccCCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHHhcc
Q psy2343         286 IDKEK--LEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       286 l~~~~--~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      .....  ....++.+.+++.+.....+++|++||+...          ...++.+..|++.++..+.+.
T Consensus       242 ~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~  310 (415)
T COG0446         242 ANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA  310 (415)
T ss_pred             HhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc
Confidence            55443  3334456777666544358999999996431          345778899999999988865

>KOG0399|consensus

Probab=99.37  E-value=6.6e-13  Score=134.08  Aligned_cols=283  Identities=17%  Similarity=0.167  Sum_probs=150.9

Q ss_pred             CCCCccccccCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe
Q psy2343           1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY   80 (396)
Q Consensus         1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~   80 (396)
                      |++++||+-.|.      .|++.+                       .+-+.+.-.+...+-|++  +..|++|-+    
T Consensus      1816 r~dr~ggll~yg------ipnmkl-----------------------dk~vv~rrv~ll~~egi~--f~tn~eigk---- 1860 (2142)
T KOG0399|consen 1816 RSDRVGGLLMYG------IPNMKL-----------------------DKFVVQRRVDLLEQEGIR--FVTNTEIGK---- 1860 (2142)
T ss_pred             ecCCcCceeeec------CCccch-----------------------hHHHHHHHHHHHHhhCce--EEeeccccc----
Confidence            577888888877      565553                       234667777777788876  556666522    


Q ss_pred             CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Cccc-----ceeecccCC--------CCCCCCCCeEEEEcCCC
Q psy2343          81 EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSG-----EILHSMDYK--------SPDQIRNKRVLVVGAGN  146 (396)
Q Consensus        81 ~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g-----~~~hs~~~~--------~~~~~~~k~VvVVG~G~  146 (396)
                          .|.. |+-....|+||+|+|+. .|+-.++|| ..+|     ..+|...-.        .....+||+|+|||||.
T Consensus      1861 ----~vs~-d~l~~~~daiv~a~gst-~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggd 1934 (2142)
T KOG0399|consen 1861 ----HVSL-DELKKENDAIVLATGST-TPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGD 1934 (2142)
T ss_pred             ----cccH-HHHhhccCeEEEEeCCC-CCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCC
Confidence                1322 22235799999999995 788777888 4443     444433110        11245899999999999


Q ss_pred             cHHHHHHHHhcC-CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy2343         147 SGCDIAVDASHH-SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHP  225 (396)
Q Consensus       147 sa~d~a~~l~~~-~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  225 (396)
                      +|.|+...-.+. ++.|--+.     .+|.+...+..|..+...|..++-.    .-........-.++..|.++     
T Consensus      1935 tg~dcigtsvrhg~~sv~n~e-----llp~pp~~ra~~npwpqwprvfrvd----ygh~e~~~~~g~dpr~y~vl----- 2000 (2142)
T KOG0399|consen 1935 TGTDCIGTSVRHGCKSVGNFE-----LLPQPPPERAPDNPWPQWPRVFRVD----YGHAEAKEHYGSDPRTYSVL----- 2000 (2142)
T ss_pred             ccccccccchhhccceeccee-----ecCCCCcccCCCCCCccCceEEEee----cchHHHHHHhCCCcceeeee-----
Confidence            999988776665 45443332     3333322222222222223222210    00011111222333333331     


Q ss_pred             CCcccCccCchhhhcccCCCeEecCCcceEe----CCe----EEecCC-cEecCcEEEEccCCCCCCC-CCCcccccccC
Q psy2343         226 LDAAHPIMNSQILYHIGHGDILPKDDIKNLN----GNI----VHFVDD-THIEVDTIIYATGYNRHFP-FIDKEKLEWKL  295 (396)
Q Consensus       226 ~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~----~~~----v~~~dG-~~~~~D~VI~aTG~~~~~~-~l~~~~~~~~~  295 (396)
                        .++-.-.       .+|+++-.. +.+++    ..+    ++..+. +.+++|.||+|.||-..-+ ..+...++.+.
T Consensus      2001 --tk~f~~~-------~~g~v~gl~-~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~ 2070 (2142)
T KOG0399|consen 2001 --TKRFIGD-------DNGNVTGLE-TVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDP 2070 (2142)
T ss_pred             --eeeeecc-------CCCceeeEE-EEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCc
Confidence              1111101       113333111 11111    111    222222 3489999999999985433 33332333322


Q ss_pred             -CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHH----hccccCCCc
Q psy2343         296 -GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYI----QAFIRKSKG  348 (396)
Q Consensus       296 -~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l----~~~~~lp~~  348 (396)
                       +.+..-..-+.++++.+|++||++.+.+++..+...+|-+|+.+    .+..-||..
T Consensus      2071 rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~vd~~~~~~t~l~~~ 2128 (2142)
T KOG0399|consen 2071 RSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQVDELMGGTTDLPGD 2128 (2142)
T ss_pred             cccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHHHHHhCCcccCCCC
Confidence             22333344478899999999999987666555555566655544    455457753

>KOG1346|consensus

Probab=99.28  E-value=4e-12  Score=116.83  Aligned_cols=217  Identities=14%  Similarity=0.237  Sum_probs=136.3

Q ss_pred             eEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC-CCCC---Cccc--ceeec-ccCCCCCC-C-CCCe
Q psy2343          68 SIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP-NYSG---YFSG--EILHS-MDYKSPDQ-I-RNKR  138 (396)
Q Consensus        68 i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P-~~~g---~~~g--~~~hs-~~~~~~~~-~-~~k~  138 (396)
                      +..+-+|++|+-.++  .|.+.||.++.||.++||||.  .|+-. .+..   ...-  .++|. .+|+..+. . .-++
T Consensus       274 vl~G~kvvkid~~d~--~V~LnDG~~I~YdkcLIATG~--~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~aek~s  349 (659)
T KOG1346|consen  274 VLRGRKVVKIDEEDK--KVILNDGTTIGYDKCLIATGV--RPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAEKQS  349 (659)
T ss_pred             EEeccceEEeecccC--eEEecCCcEeehhheeeecCc--CcccchhhhhcCHHhhhheeEEecchHHHHHHHhhhhcce
Confidence            556667777776554  678889999999999999999  77643 3332   2222  22332 12222211 1 1268


Q ss_pred             EEEEcCCCcHHHHHHHHhcC----CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343         139 VLVVGAGNSGCDIAVDASHH----SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG  214 (396)
Q Consensus       139 VvVVG~G~sa~d~a~~l~~~----~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  214 (396)
                      |.|||+|..|.|+|..|.+.    +-+|+.+.....          +..   .-||..+.+     +-            
T Consensus       350 iTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~----------nm~---kiLPeyls~-----wt------------  399 (659)
T KOG1346|consen  350 ITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY----------NME---KILPEYLSQ-----WT------------  399 (659)
T ss_pred             EEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccC----------Chh---hhhHHHHHH-----HH------------
Confidence            99999999999999999885    446777654431          000   003333322     11            


Q ss_pred             CCCCCCCCCCCCCcccCccCchhhhcccCCCeEecC--CcceEe--C--CeEEecCCcEecCcEEEEccCCCCCCCCCCc
Q psy2343         215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD--DIKNLN--G--NIVHFVDDTHIEVDTIIYATGYNRHFPFIDK  288 (396)
Q Consensus       215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~--~i~~i~--~--~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~  288 (396)
                                             .+.++.+.|.+.+  .|+++.  .  --+.+.||+++..|.||.|+|-.|+..+...
T Consensus       400 -----------------------~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~  456 (659)
T KOG1346|consen  400 -----------------------IEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEA  456 (659)
T ss_pred             -----------------------HHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccc
Confidence                                   2334444555543  344332  1  2367899999999999999999999999988


Q ss_pred             ccccccC--CccccccccccCCCCcEEEEecccCcCc---------hhhHHHHHHHHHHHHHhccc
Q psy2343         289 EKLEWKL--GIPDLFIHIAPRNLDNIFFFGFVNAAAG---------LGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       289 ~~~~~~~--~~~~l~~~~~~~~~p~l~~iG~~~~~~~---------~~~~ae~qa~~~a~~l~~~~  343 (396)
                      .+++.+.  +++.++..+..  ..||+++||+.....         .+-.+-..+|++..++.|..
T Consensus       457 sgLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAa  520 (659)
T KOG1346|consen  457 SGLEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAA  520 (659)
T ss_pred             ccceeecccCcEEeeheeec--ccceeeecchhhhhcccccceeccccccceeeceeccccccccc
Confidence            8887643  56666655433  579999999865321         23344455666666655553

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.21  E-value=7.3e-10  Score=105.27  Aligned_cols=131  Identities=21%  Similarity=0.284  Sum_probs=92.0

Q ss_pred             CCCCCChHHHHHHHHHHHHHcCCCCc---e-EeCcEEEEEEEe--CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCC
Q psy2343          42 YPVYPNHSMMLDYLRSYAKKFDVYNH---S-IFNTEVINLEQY--EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYS  115 (396)
Q Consensus        42 ~~~~p~~~~~~~Yl~~~~~~~~l~~~---i-~~~t~V~~v~~~--~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~  115 (396)
                      .+.||++..+.+|+.++.+.|--...   + ...++++++.++  .+.|.+++.+|.+..||-+|+|||+  .+..++..
T Consensus        93 ~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh--~~~~~~~~  170 (474)
T COG4529          93 GQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGH--SAPPADPA  170 (474)
T ss_pred             cccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccC--CCCCcchh
Confidence            45699999999999988876522111   3 346788888887  6789999999999999999999999  33333222


Q ss_pred             C-Ccccce-eecccCCCCC---CCCCCeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccCceeecCC
Q psy2343         116 G-YFSGEI-LHSMDYKSPD---QIRNKRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGYHYYPKF  176 (396)
Q Consensus       116 g-~~~g~~-~hs~~~~~~~---~~~~k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~~~~~p~~  176 (396)
                      . .+.|.. +++..|....   --.+.+|+|+|+|.+.+|....+.+.+  .+||+++|++  .+|+.
T Consensus       171 ~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG--l~~~~  236 (474)
T COG4529         171 ARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG--LVPRP  236 (474)
T ss_pred             hhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc--cccCC
Confidence            2 444422 2232232211   124567999999999999999999864  4699999998  44544

>PRK09897 hypothetical protein; Provisional

Probab=99.16  E-value=1.5e-09  Score=107.79  Aligned_cols=123  Identities=11%  Similarity=0.130  Sum_probs=85.3

Q ss_pred             CCCCChHHHHHHHHHHHHHc-------CCCCceEeCcEEEEEEEeCCeEEEEEcc-CcEEEcCEEEEcccCCCCCCCCCC
Q psy2343          43 PVYPNHSMMLDYLRSYAKKF-------DVYNHSIFNTEVINLEQYEDIWEVELSN-GKKKKYDFIAVCNGAQRVARYPNY  114 (396)
Q Consensus        43 ~~~p~~~~~~~Yl~~~~~~~-------~l~~~i~~~t~V~~v~~~~~~~~V~~~~-g~~~~~d~vvvAtG~~~~p~~P~~  114 (396)
                      ..|+++..+.+||++..+.+       ++.-.++.+++|++|++.+++|.|++.+ +..+.+|+||+|||+. .|..+. 
T Consensus        94 ~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~-~p~~~~-  171 (534)
T PRK09897         94 RQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHV-WPDEEE-  171 (534)
T ss_pred             CccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCC-CCCCCh-
Confidence            35899999999988877654       1112356788999999988889999865 4678999999999983 233221 


Q ss_pred             CCCcccceeecccCCCC--CCCCCCeEEEEcCCCcHHHHHHHHhcCC---------------------CcEEEEeccCce
Q psy2343         115 SGYFSGEILHSMDYKSP--DQIRNKRVLVVGAGNSGCDIAVDASHHS---------------------EKVYHSTRRGYH  171 (396)
Q Consensus       115 ~g~~~g~~~hs~~~~~~--~~~~~k~VvVVG~G~sa~d~a~~l~~~~---------------------~~V~l~~r~~~~  171 (396)
                       +. .+  .....|...  ....+.+|+|+|.|.|++|++..|+...                     .++++++|++..
T Consensus       172 -~~-~~--yi~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl~  247 (534)
T PRK09897        172 -AT-RT--YFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGIL  247 (534)
T ss_pred             -hh-cc--ccCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcceeeecCCCCCceEEEEeCCCCC
Confidence             10 11  111112111  1234789999999999999999987441                     369999999853

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.04  E-value=1.1e-09  Score=106.38  Aligned_cols=250  Identities=18%  Similarity=0.125  Sum_probs=140.0

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccc
Q psy2343          43 PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGE  121 (396)
Q Consensus        43 ~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~  121 (396)
                      |+|--.+++.+....+.++.|++  ++.|++|-.        .++.+.-. ..||+|++|||.. .|+..+++| ...| 
T Consensus       167 P~~kl~k~i~d~~i~~l~~~Gv~--~~~~~~vG~--------~it~~~L~-~e~Dav~l~~G~~-~~~~l~i~g~d~~g-  233 (457)
T COG0493         167 PDFKLPKDILDRRLELLERSGVE--FKLNVRVGR--------DITLEELL-KEYDAVFLATGAG-KPRPLDIPGEDAKG-  233 (457)
T ss_pred             chhhccchHHHHHHHHHHHcCeE--EEEcceECC--------cCCHHHHH-HhhCEEEEecccc-CCCCCCCCCcCCCc-
Confidence            45555568899999999999966  888877631        23322222 3579999999985 788778888 3333 


Q ss_pred             eeecccCC--------------CCCCCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccCceeecCCCCCCChhHHH
Q psy2343         122 ILHSMDYK--------------SPDQIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRGYHYYPKFIDGKPTPQWM  186 (396)
Q Consensus       122 ~~hs~~~~--------------~~~~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~~~~~p~~~~~~~~~~~~  186 (396)
                      +..+.+|.              .....+||+|+|||+|.||+|++....+. +++|+.+.|...-     ....+     
T Consensus       234 v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~-----~~~~~-----  303 (457)
T COG0493         234 VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRD-----DETNE-----  303 (457)
T ss_pred             chHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEecccccc-----ccCCc-----
Confidence            22222111              11233569999999999999999887776 5689888743311     00000     


Q ss_pred             HhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc--cCCCeEecC--CcceE---e---
Q psy2343         187 LQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI--GHGDILPKD--DIKNL---N---  256 (396)
Q Consensus       187 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i--~~g~i~~~~--~i~~i---~---  256 (396)
                        .|.+-..     ...+. . ...+....                ....-...+  ..|+|.-..  .+...   +   
T Consensus       304 --~~~~~~~-----~~~~~-a-~eeg~~~~----------------~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~  358 (457)
T COG0493         304 --WPTWAAQ-----LEVRS-A-GEEGVERL----------------PFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWG  358 (457)
T ss_pred             --ccccchh-----hhhhh-h-hhcCCccc----------------ccCCceeEeecCCCcEeeeecccccccCcccccc
Confidence              0000000     00000 0 00000000                001111111  224444111  11110   0   


Q ss_pred             -CCeEEecCCc-EecCcEEEEccCCCCCCCCCC-cc-cccc-cCCccccccccccCCCCcEEEEecccCcCchhhHHHHH
Q psy2343         257 -GNIVHFVDDT-HIEVDTIIYATGYNRHFPFID-KE-KLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQ  331 (396)
Q Consensus       257 -~~~v~~~dG~-~~~~D~VI~aTG~~~~~~~l~-~~-~~~~-~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~q  331 (396)
                       ...+.+...+ .+++|.|+.|+|+.++..... .. .+.. ..+.+.+......++.|++|+.||+..+...+..+..+
T Consensus       359 r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~e  438 (457)
T COG0493         359 RRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAE  438 (457)
T ss_pred             cccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhh
Confidence             1112222222 378999999999998865421 11 2222 22444444443378899999999998866777788889


Q ss_pred             HHHHHHHHh
Q psy2343         332 GQFIRSYIQ  340 (396)
Q Consensus       332 a~~~a~~l~  340 (396)
                      +|-+|+.+.
T Consensus       439 Gr~aak~i~  447 (457)
T COG0493         439 GREAAKAID  447 (457)
T ss_pred             chHHHHhhh
Confidence            999888776

>KOG2755|consensus

Probab=98.93  E-value=4.5e-09  Score=91.52  Aligned_cols=83  Identities=20%  Similarity=0.331  Sum_probs=61.6

Q ss_pred             CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCC-----CCCCCeEEEEcCCCcHHHHHHHH
Q psy2343          81 EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPD-----QIRNKRVLVVGAGNSGCDIAVDA  155 (396)
Q Consensus        81 ~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~-----~~~~k~VvVVG~G~sa~d~a~~l  155 (396)
                      ...-.+.+++|..+.|++|++|||.  +|+.-. +| -...++--.+-.+.+     -.+.|+|+|+|.|.+|+|++.++
T Consensus        78 s~ehci~t~~g~~~ky~kKOG~tg~--kPklq~-E~-~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yEl  153 (334)
T KOG2755|consen   78 SSEHCIHTQNGEKLKYFKLCLCTGY--KPKLQV-EG-INPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYEL  153 (334)
T ss_pred             cccceEEecCCceeeEEEEEEecCC--Ccceee-cC-CCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHh
Confidence            4455888999999999999999999  887642 22 122344444444443     23789999999999999999999


Q ss_pred             hcCCCcEEEEeccC
Q psy2343         156 SHHSEKVYHSTRRG  169 (396)
Q Consensus       156 ~~~~~~V~l~~r~~  169 (396)
                      ...  +|+|....+
T Consensus       154 k~~--nv~w~ikd~  165 (334)
T KOG2755|consen  154 KIL--NVTWKIKDE  165 (334)
T ss_pred             hcc--eeEEEecch
Confidence            876  688887654

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.91  E-value=9e-09  Score=106.62  Aligned_cols=62  Identities=19%  Similarity=0.304  Sum_probs=43.5

Q ss_pred             EEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCC-------------CCCCCCeEEEEcCCCcHHHHHHHHhc
Q psy2343          94 KKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSP-------------DQIRNKRVLVVGAGNSGCDIAVDASH  157 (396)
Q Consensus        94 ~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~-------------~~~~~k~VvVVG~G~sa~d~a~~l~~  157 (396)
                      ..||+|+||||+. .|+.+++|| ... .++.+.++...             ....|++|+|||||++|+|+|.....
T Consensus       496 ~gyDAV~IATGA~-kpr~L~IPGeda~-GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr  571 (1028)
T PRK06567        496 LGFDHIAFCIGAG-QPKVLDIENFEAK-GVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLY  571 (1028)
T ss_pred             cCCCEEEEeCCCC-CCCCCCCCCccCC-CeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHh
Confidence            5699999999984 588888998 332 23333332111             01147899999999999999996543

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.88  E-value=1.5e-07  Score=91.45  Aligned_cols=36  Identities=28%  Similarity=0.478  Sum_probs=29.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhc---------------------CCCcEEEEeccCc
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASH---------------------HSEKVYHSTRRGY  170 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~---------------------~~~~V~l~~r~~~  170 (396)
                      ..++++|||.|+.|+|+|+.|++                     ..++|+++-||+.
T Consensus       196 ~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp  252 (506)
T PTZ00188        196 NFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGF  252 (506)
T ss_pred             CCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCH
Confidence            56799999999999999997542                     2468999999983

>KOG1800|consensus

Probab=98.84  E-value=9.9e-08  Score=87.58  Aligned_cols=115  Identities=23%  Similarity=0.307  Sum_probs=71.5

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccc
Q psy2343          43 PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGE  121 (396)
Q Consensus        43 ~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~  121 (396)
                      |+.|--+-+..-+...|++..+.  ..-|.+|-+        .|++++- +-.||+||+|.|+. .++..+||| ...| 
T Consensus        67 PDHpEvKnvintFt~~aE~~rfs--f~gNv~vG~--------dvsl~eL-~~~ydavvLaYGa~-~dR~L~IPGe~l~~-  133 (468)
T KOG1800|consen   67 PDHPEVKNVINTFTKTAEHERFS--FFGNVKVGR--------DVSLKEL-TDNYDAVVLAYGAD-GDRRLDIPGEELSG-  133 (468)
T ss_pred             CCCcchhhHHHHHHHHhhccceE--EEecceecc--------cccHHHH-hhcccEEEEEecCC-CCcccCCCCccccc-
Confidence            44444445556666666664432  233444311        1222221 24799999999996 466778888 4333 


Q ss_pred             eeecccCCCC-----------CCCCCCeEEEEcCCCcHHHHHHHHhcC----------------------CCcEEEEecc
Q psy2343         122 ILHSMDYKSP-----------DQIRNKRVLVVGAGNSGCDIAVDASHH----------------------SEKVYHSTRR  168 (396)
Q Consensus       122 ~~hs~~~~~~-----------~~~~~k~VvVVG~G~sa~d~a~~l~~~----------------------~~~V~l~~r~  168 (396)
                      ++.+..+...           .++.+.+|+|||.|+.|+|+|+.|...                      .++|+++.||
T Consensus       134 V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRR  213 (468)
T KOG1800|consen  134 VISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRR  213 (468)
T ss_pred             ceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEecc
Confidence            3333322221           245689999999999999999988742                      2579999998


Q ss_pred             Cc
Q psy2343         169 GY  170 (396)
Q Consensus       169 ~~  170 (396)
                      +.
T Consensus       214 gp  215 (468)
T KOG1800|consen  214 GP  215 (468)
T ss_pred             Cc
Confidence            74

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.61  E-value=2.5e-07  Score=77.41  Aligned_cols=96  Identities=21%  Similarity=0.375  Sum_probs=71.8

Q ss_pred             ccccccCCCCCCCCCCceeeecCCCcccc-CCCC---C-------------CCCCCCCCChHHHHHHHHHHHHHcC--CC
Q psy2343           5 LGGVWNSQASCGRVYPSLHLISPKFNTQV-PDYP---M-------------PDNYPVYPNHSMMLDYLRSYAKKFD--VY   65 (396)
Q Consensus         5 iGG~W~~~~~~~~~y~~~~~~~~~~~~~~-~~~p---~-------------p~~~~~~p~~~~~~~Yl~~~~~~~~--l~   65 (396)
                      .|+.|...     -.+.+.+|+++..|.+ ++-|   +             ......|+++..+.+||+++.+..-  +.
T Consensus        38 ~G~~~~~~-----~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~  112 (156)
T PF13454_consen   38 AGGAYRPD-----QPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLP  112 (156)
T ss_pred             ccccCCCC-----CChHHhhcccccccccccccCCCCHHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhc
Confidence            36788765     2677788888886655 3433   1             0112369999999999999998752  22


Q ss_pred             Cc--e-EeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343          66 NH--S-IFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        66 ~~--i-~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      ..  | +.+.+|++|++.+++|.|.+.+|..+.||+||+|||+
T Consensus       113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence            21  2 3467999999988889999999999999999999997

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.18  E-value=5.6e-07  Score=66.14  Aligned_cols=33  Identities=27%  Similarity=0.386  Sum_probs=31.4

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      +|+|||+|.+|+|+|..+++.+.+|+++.|++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence            699999999999999999999999999999874

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.18  E-value=1.7e-06  Score=75.48  Aligned_cols=80  Identities=25%  Similarity=0.407  Sum_probs=52.3

Q ss_pred             HHHcCCCCceEeCcEEEEEEEeCCe-----EEEE---EccCcEEEcCEEEEcccCCCCCCCCCCCCC----cccceeecc
Q psy2343          59 AKKFDVYNHSIFNTEVINLEQYEDI-----WEVE---LSNGKKKKYDFIAVCNGAQRVARYPNYSGY----FSGEILHSM  126 (396)
Q Consensus        59 ~~~~~l~~~i~~~t~V~~v~~~~~~-----~~V~---~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~----~~g~~~hs~  126 (396)
                      +++.++.  ++++++|.+|+...+.     +.+.   ..++.++.||+||+|||.  .|+.|.+||.    +...+.++.
T Consensus        68 ~~~~~v~--~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~--~~~~~~i~g~~~~~~~~~~~~~~  143 (201)
T PF07992_consen   68 LKNRGVE--IRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS--RPRTPNIPGEEVAYFLRGVDDAQ  143 (201)
T ss_dssp             HHHHTHE--EEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTE--EEEEESSTTTTTECBTTSEEHHH
T ss_pred             cccceEE--EeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcc--ccceeecCCCccccccccccccc
Confidence            3456655  6789999999887653     2332   234556999999999998  7888888872    112334444


Q ss_pred             cCCCCCCCCCCeEEEEc
Q psy2343         127 DYKSPDQIRNKRVLVVG  143 (396)
Q Consensus       127 ~~~~~~~~~~k~VvVVG  143 (396)
                      .+...... .++|+|||
T Consensus       144 ~~~~~~~~-~~~v~VvG  159 (201)
T PF07992_consen  144 RFLELLES-PKRVAVVG  159 (201)
T ss_dssp             HHHTHSST-TSEEEEES
T ss_pred             cccccccc-cccccccc
Confidence            33333333 34999999

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.03  E-value=1.3e-05  Score=74.46  Aligned_cols=32  Identities=25%  Similarity=0.334  Sum_probs=29.7

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||+|.+|+.+|..|++.+.+|+++.+..
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   33 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGME   33 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence            69999999999999999999999999999764

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.00  E-value=2.5e-05  Score=74.56  Aligned_cols=109  Identities=17%  Similarity=0.314  Sum_probs=73.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFD  213 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  213 (396)
                      .++|||||||..|+.+|..|.+.-  .+|+++.|++.+..+..                         +    .+...+.
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~pl-------------------------L----~eva~g~   53 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPL-------------------------L----YEVATGT   53 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchh-------------------------h----hhhhcCC
Confidence            579999999999999999999874  67999999986533211                         0    0011111


Q ss_pred             CCCCCCCCCCCCCCcccCccCchhhhccc-CCCeEe-cCCcceEe--CCeEEecCCcEecCcEEEEccCCCCCCCCCC
Q psy2343         214 GVDYGLKKPDHPLDAAHPIMNSQILYHIG-HGDILP-KDDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFPFID  287 (396)
Q Consensus       214 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~-~g~i~~-~~~i~~i~--~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~  287 (396)
                      ...              ..+...+...++ .+++.. ...|+.|+  ++.|++.++..+++|.+|+|+|.++++.-++
T Consensus        54 l~~--------------~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~  117 (405)
T COG1252          54 LSE--------------SEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIP  117 (405)
T ss_pred             CCh--------------hheeccHHHHhcccCceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCCCC
Confidence            100              011122333444 345664 35677775  5689999988899999999999999875444

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.93  E-value=4.9e-05  Score=74.45  Aligned_cols=37  Identities=16%  Similarity=0.246  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCce
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH  171 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~  171 (396)
                      ..++|||||||..|+.+|..|.....+|+++.+++.+
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~   45 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM   45 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence            4579999999999999999987655689999988743

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.79  E-value=0.00012  Score=71.11  Aligned_cols=35  Identities=14%  Similarity=0.277  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCC--cEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~--~V~l~~r~~  169 (396)
                      +.++|+|||+|..|+.+|..|.+...  +|+++.+.+
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~   38 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER   38 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence            46789999999999999999998743  789998765

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.77  E-value=5.1e-05  Score=72.80  Aligned_cols=107  Identities=8%  Similarity=0.102  Sum_probs=63.7

Q ss_pred             eEEEEcCCCcHHHHHHHHhcC---CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHH---SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG  214 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~---~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  214 (396)
                      +|||||||..|+.+|..+.+.   ..+|+++.+++.......            +|..+..                 ..
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~------------~~~~~~g-----------------~~   51 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM------------LPGMIAG-----------------HY   51 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch------------hhHHHhe-----------------eC
Confidence            589999999999999998643   467999998764321110            0100000                 00


Q ss_pred             CCCCCCCCCCCCCcccCccCchhhhcccCCCeEe-cCCcceEe--CCeEEecCCcEecCcEEEEccCCCCCCCCCC
Q psy2343         215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-KDDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFPFID  287 (396)
Q Consensus       215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~-~~~i~~i~--~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~  287 (396)
                            .+.        .+...+.+.+..-.+++ ...+.+++  ++.|.+.+|+++.+|.+|+|||.++..|-++
T Consensus        52 ------~~~--------~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~  113 (364)
T TIGR03169        52 ------SLD--------EIRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVE  113 (364)
T ss_pred             ------CHH--------HhcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCCCCCCC
Confidence                  000        00000111111112332 33566665  4578899999999999999999999877655

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.74  E-value=5.5e-05  Score=74.64  Aligned_cols=34  Identities=12%  Similarity=0.278  Sum_probs=29.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~~  170 (396)
                      ++|+|||+|..|+.+|..|.+..  .+|+++.+++.
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~   36 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI   36 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence            48999999999999999998864  37999999874

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.67  E-value=0.0001  Score=69.13  Aligned_cols=138  Identities=11%  Similarity=0.176  Sum_probs=78.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCce----eecCC-----CCCCChhHHHHhhC---ccccChHHHHHHHH
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH----YYPKF-----IDGKPTPQWMLQLG---NKFSSKEETMAYIK  204 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~----~~p~~-----~~~~~~~~~~~~~p---~~~~~~~~~~~~~~  204 (396)
                      ..|+|||+|.+|+=+|..+++.+.+|.++.+.+..    .+.--     ....+.+.++.+.|   ..++.  .+.++..
T Consensus         4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~s--al~~ft~   81 (408)
T COG2081           4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKS--ALARFTP   81 (408)
T ss_pred             ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHH--HHHhCCH
Confidence            47999999999999999999999999999986531    11100     01122555665555   22221  0001111


Q ss_pred             H-HHHHhcCCCCCCCCCCCCCC---CCc---ccCccCchhhhcccCCCeEe--cCCcceEeCC----eEEecCCcEecCc
Q psy2343         205 Q-VFKLAGFDGVDYGLKKPDHP---LDA---AHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFVDDTHIEVD  271 (396)
Q Consensus       205 ~-~~~~~~~~~~~~~~~~p~~~---~~~---~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~~~dG~~~~~D  271 (396)
                      + ++.+    -+.+|+.--...   +++   +-..+-+.+...++...|++  ...|.+++..    .|...+|+++.||
T Consensus        82 ~d~i~~----~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d  157 (408)
T COG2081          82 EDFIDW----VEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCD  157 (408)
T ss_pred             HHHHHH----HHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEcc
Confidence            1 1111    112222111111   111   11122345556666666665  4578887644    4667788899999


Q ss_pred             EEEEccCCC
Q psy2343         272 TIIYATGYN  280 (396)
Q Consensus       272 ~VI~aTG~~  280 (396)
                      .+|+|||-.
T Consensus       158 ~lilAtGG~  166 (408)
T COG2081         158 SLILATGGK  166 (408)
T ss_pred             EEEEecCCc
Confidence            999999954

>KOG3851|consensus

Probab=97.61  E-value=0.00018  Score=65.11  Aligned_cols=106  Identities=13%  Similarity=0.125  Sum_probs=53.7

Q ss_pred             hhhcccCCCeEec--CCcceEeCC--eEEec---C-CcE--ecCcEEEEccCCCCC-CCCCCcccccccCCcccccccc-
Q psy2343         237 ILYHIGHGDILPK--DDIKNLNGN--IVHFV---D-DTH--IEVDTIIYATGYNRH-FPFIDKEKLEWKLGIPDLFIHI-  304 (396)
Q Consensus       237 ~~~~i~~g~i~~~--~~i~~i~~~--~v~~~---d-G~~--~~~D~VI~aTG~~~~-~~~l~~~~~~~~~~~~~l~~~~-  304 (396)
                      +.+.+++.+|++.  .+..++..+  ..+|+   + |..  ++.+.+=  .+---+ ..+|....+....|.+.+.... 
T Consensus       242 L~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLH--v~Ppms~pe~l~~s~~adktGfvdVD~~Tl  319 (446)
T KOG3851|consen  242 LEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLH--VTPPMSTPEVLANSDLADKTGFVDVDQSTL  319 (446)
T ss_pred             HHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeee--ccCCCCChhhhhcCcccCcccceecChhhh
Confidence            3444455566653  344444332  23332   2 554  3444433  222212 2244433333344566665444 


Q ss_pred             ccCCCCcEEEEecccCcCc--hhhHHHHHHHHHHHHHhcccc
Q psy2343         305 APRNLDNIFFFGFVNAAAG--LGDGLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       305 ~~~~~p~l~~iG~~~~~~~--~~~~ae~qa~~~a~~l~~~~~  344 (396)
                      .+..+||+|.|||+....+  +...+..|+..+-+++...++
T Consensus       320 Qs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~~~m~  361 (446)
T KOG3851|consen  320 QSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLTQVMQ  361 (446)
T ss_pred             ccccCCCceeeccccCCCchhhHHHHHhcCchhhhhHHHHhc
Confidence            4556999999999976432  333445666666666655544

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.51  E-value=0.00014  Score=77.70  Aligned_cols=36  Identities=22%  Similarity=0.023  Sum_probs=33.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -.||+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~  339 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH  339 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence            358999999999999999999999999999999864

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.49  E-value=0.00055  Score=64.29  Aligned_cols=63  Identities=17%  Similarity=0.239  Sum_probs=57.6

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY  111 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~  111 (396)
                      +.+.+.+-|..-++..++.  |+.+++|.+|++++..|.|++.+|+++.||+||||||..+.|++
T Consensus       109 kA~~Iv~~ll~~~~~~gV~--i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P~l  171 (408)
T COG2081         109 KASPIVDALLKELEALGVT--IRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPKL  171 (408)
T ss_pred             chHHHHHHHHHHHHHcCcE--EEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCCCC
Confidence            5789999999999999998  99999999999988899999999988999999999998766754

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.48  E-value=0.00027  Score=74.75  Aligned_cols=35  Identities=14%  Similarity=0.162  Sum_probs=29.5

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcC----CCcEEEEeccCc
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHH----SEKVYHSTRRGY  170 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~----~~~V~l~~r~~~  170 (396)
                      .++|||||+|..|+..|..|.+.    ..+|+++.+.+.
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~   41 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPR   41 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCC
Confidence            36899999999999999999764    247999998864

>PRK06116 glutathione reductase; Validated

Probab=97.43  E-value=0.00068  Score=67.03  Aligned_cols=31  Identities=26%  Similarity=0.348  Sum_probs=29.3

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .|+|||+|..|..+|..+++.+.+|.++.+.
T Consensus         6 DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~   36 (450)
T PRK06116          6 DLIVIGGGSGGIASANRAAMYGAKVALIEAK   36 (450)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            6999999999999999999999999999975

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.41  E-value=0.00027  Score=74.93  Aligned_cols=36  Identities=28%  Similarity=0.257  Sum_probs=33.4

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+|+|+|||||.+|+.+|..|++.+.+|+++.+.+
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~  572 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE  572 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence            468999999999999999999999999999999865

>TIGR00292 thiazole biosynthesis enzyme

Probab=97.40  E-value=0.0012  Score=59.68  Aligned_cols=36  Identities=31%  Similarity=0.308  Sum_probs=32.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +..-+|+|||+|.+|+=+|..|++.+.+|.++.|.+
T Consensus        19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~   54 (254)
T TIGR00292        19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL   54 (254)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            345579999999999999999999999999999975

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.38  E-value=0.0009  Score=65.87  Aligned_cols=34  Identities=18%  Similarity=0.231  Sum_probs=29.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~  170 (396)
                      ++|||||||..|+.+|..|.+.  ..+|+++.+.+.
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~   37 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD   37 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            4899999999999999999876  467999999864

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.35  E-value=0.0011  Score=65.48  Aligned_cols=31  Identities=32%  Similarity=0.459  Sum_probs=29.3

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .|+|||+|..|...|..+++.+++|.++.+.
T Consensus         4 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~   34 (446)
T TIGR01424         4 DLFVIGAGSGGVRAARLAANHGAKVAIAEEP   34 (446)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            6999999999999999999999999999874

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.32  E-value=0.00075  Score=67.89  Aligned_cols=33  Identities=30%  Similarity=0.376  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ..+|+|||||..|+.+|..+++.+.+|+++.++
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~  243 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER  243 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            458999999999999999999999999999754

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.31  E-value=0.0021  Score=63.55  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ...|+|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~   43 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREK   43 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence            446899999999999999999999999999999975

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.31  E-value=0.00058  Score=71.75  Aligned_cols=37  Identities=19%  Similarity=0.211  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ...||+|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus       380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            4578999999999999999999999999999999753

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=97.30  E-value=0.0027  Score=57.66  Aligned_cols=37  Identities=30%  Similarity=0.228  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++..-+|+|||+|.+|+=+|..|++.+.+|.++.+.+
T Consensus        22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~   58 (257)
T PRK04176         22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL   58 (257)
T ss_pred             HhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence            3344579999999999999999999999999999875

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.29  E-value=0.00099  Score=63.96  Aligned_cols=129  Identities=15%  Similarity=0.202  Sum_probs=67.8

Q ss_pred             eEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGV  215 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  215 (396)
                      .|+|||+|.+|.-+|..|++.  +.+|.++.+.+. +.+......    |...+.....      .....++...+..  
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~-~~~~~tw~~----~~~~~~~~~~------~~~~~~v~~~W~~--   67 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT-IGGNHTWSF----FDSDLSDAQH------AWLADLVQTDWPG--   67 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC-CCCccccee----cccccchhhh------hhhhhhheEeCCC--
Confidence            489999999999999999986  788999988651 101000000    0000000000      0011111111111  


Q ss_pred             CCCCCCCCCC--CCcc-cCccCchhhhc----ccCCCeEecCCcceEeCCeEEecCCcEecCcEEEEccCCCC
Q psy2343         216 DYGLKKPDHP--LDAA-HPIMNSQILYH----IGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNR  281 (396)
Q Consensus       216 ~~~~~~p~~~--~~~~-~~~~~~~~~~~----i~~g~i~~~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~  281 (396)
                       +.+..+...  .... ..+.+.++.+.    +..+ |.....|.+++.++|+++||+++.+|.||.|.|.++
T Consensus        68 -~~v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s  138 (370)
T TIGR01789        68 -YEVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEG-VILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKP  138 (370)
T ss_pred             -CEEECcchhhhcCCCceEEEHHHHHHHHHHhhccc-EEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence             100001000  0000 01112333333    3334 656667888888889999999999999999999664

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.28  E-value=0.0001  Score=70.08  Aligned_cols=30  Identities=40%  Similarity=0.687  Sum_probs=26.0

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTR  167 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r  167 (396)
                      +|+|||||..|+|.|..+++.+.+|.|++.
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~   30 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITH   30 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEee
Confidence            589999999999999999999999999954

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.27  E-value=0.00036  Score=68.98  Aligned_cols=36  Identities=25%  Similarity=0.187  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhc--CCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASH--HSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~--~~~~V~l~~r~~  169 (396)
                      -.+++|+|||+|.+|+.+|..|++  .+.+|+++.+.+
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p   61 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP   61 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence            357899999999999999999986  578999999986

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.24  E-value=0.00059  Score=71.99  Aligned_cols=107  Identities=13%  Similarity=0.098  Sum_probs=63.0

Q ss_pred             EEEEcCCCcHHHHHHHHhcCC---CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCC
Q psy2343         139 VLVVGAGNSGCDIAVDASHHS---EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGV  215 (396)
Q Consensus       139 VvVVG~G~sa~d~a~~l~~~~---~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  215 (396)
                      |||||+|..|+.+|..|.+..   .+|+++.+.+.....+.  .         ++..+.                 +...
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~--~---------L~~~l~-----------------g~~~   52 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRI--L---------LSSVLQ-----------------GEAD   52 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccc--c---------ccHHHC-----------------CCCC
Confidence            689999999999999987754   47999998864211100  0         000000                 0000


Q ss_pred             CCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeC--CeEEecCCcEecCcEEEEccCCCCCCCCCC
Q psy2343         216 DYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRHFPFID  287 (396)
Q Consensus       216 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~  287 (396)
                      .-.+           .....++   +...+|++.  ..|..++.  ..|.+.+|+.+.+|.+|+|||.++..|-++
T Consensus        53 ~~~l-----------~~~~~~~---~~~~gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ip  114 (785)
T TIGR02374        53 LDDI-----------TLNSKDW---YEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIP  114 (785)
T ss_pred             HHHc-----------cCCCHHH---HHHCCCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCC
Confidence            0000           0001111   122245543  45777764  568889999999999999999987655443

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.23  E-value=0.00079  Score=66.32  Aligned_cols=32  Identities=22%  Similarity=0.358  Sum_probs=30.2

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||+|..|+.+|..+++.+.+|+++.+.+
T Consensus         5 dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~   36 (438)
T PRK07251          5 DLIVIGFGKAGKTLAAKLASAGKKVALVEESK   36 (438)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence            69999999999999999999999999999864

>PLN02661 Putative thiazole synthesis

Probab=97.22  E-value=0.0028  Score=59.51  Aligned_cols=46  Identities=22%  Similarity=0.203  Sum_probs=36.3

Q ss_pred             ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343         124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG  169 (396)
Q Consensus       124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~  169 (396)
                      ....+.+..++..-+|+|||+|.+|+=+|..|++. +.+|+++.+..
T Consensus        80 ~~~~~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~  126 (357)
T PLN02661         80 TRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV  126 (357)
T ss_pred             hHhHhhhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence            33444455556667899999999999999999975 67899999864

>PRK07236 hypothetical protein; Provisional

Probab=97.21  E-value=0.0015  Score=63.22  Aligned_cols=36  Identities=19%  Similarity=0.088  Sum_probs=32.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      ...+|+|||||.+|+-+|..|++.+-+|+++.|++.
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            357899999999999999999999999999999863

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.19  E-value=0.0012  Score=63.86  Aligned_cols=62  Identities=27%  Similarity=0.358  Sum_probs=46.1

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEccCcEEEcCEEEEcccCCCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQRVAR  110 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g~~~~~d~vvvAtG~~~~p~  110 (396)
                      ....+.+-|...+++.+++  ++++++|.+|.+++++ |.|.++++.++.+|+||||||..+.|.
T Consensus       107 ~a~~Vv~~L~~~l~~~gv~--i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~p~  169 (409)
T PF03486_consen  107 KASSVVDALLEELKRLGVE--IHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSYPK  169 (409)
T ss_dssp             -HHHHHHHHHHHHHHHT-E--EE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSSGG
T ss_pred             cHHHHHHHHHHHHHHcCCE--EEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCccc
Confidence            4678999999999999988  9999999999998665 999997777899999999999866554

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK06847 hypothetical protein; Provisional

Probab=97.18  E-value=0.003  Score=60.74  Aligned_cols=62  Identities=21%  Similarity=0.244  Sum_probs=54.5

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVA  109 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p  109 (396)
                      .++.++.++|.+.+...++.  ++++++|++++.+++.+.|++.+|+++.+|.||.|+|.++..
T Consensus       104 i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~  165 (375)
T PRK06847        104 IMRPALARILADAARAAGAD--VRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKV  165 (375)
T ss_pred             CcHHHHHHHHHHHHHHhCCE--EEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcch
Confidence            46789999999999988876  999999999998878899998888889999999999996633

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.17  E-value=0.0043  Score=51.74  Aligned_cols=31  Identities=13%  Similarity=0.231  Sum_probs=26.2

Q ss_pred             EEEcCCCcHHHHHHHHhcCC-----CcEEEEeccCc
Q psy2343         140 LVVGAGNSGCDIAVDASHHS-----EKVYHSTRRGY  170 (396)
Q Consensus       140 vVVG~G~sa~d~a~~l~~~~-----~~V~l~~r~~~  170 (396)
                      +|||+|.+|+=++..|++..     .+|+++.+.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            59999999999999998873     46899988654

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.14  E-value=0.0017  Score=63.89  Aligned_cols=34  Identities=24%  Similarity=0.310  Sum_probs=30.1

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCc-EEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~-V~l~~r~~  169 (396)
                      ..+|+|||+|.||+=+|..|.+.+-. +.++.++.
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~   42 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD   42 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence            35799999999999999999998766 89998874

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.13  E-value=0.0017  Score=64.20  Aligned_cols=31  Identities=29%  Similarity=0.434  Sum_probs=29.5

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .|+|||+|..|...|..+++.+.+|.++.+.
T Consensus         4 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~~   34 (450)
T TIGR01421         4 DYLVIGGGSGGIASARRAAEHGAKALLVEAK   34 (450)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence            6999999999999999999999999999975

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.08  E-value=0.0016  Score=65.44  Aligned_cols=33  Identities=27%  Similarity=0.352  Sum_probs=29.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR  167 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r  167 (396)
                      ...+|+|||||..|+..|..+++.+.+|+++..
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~  243 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE  243 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            356899999999999999999999999999864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.06  E-value=0.004  Score=53.74  Aligned_cols=42  Identities=26%  Similarity=0.249  Sum_probs=36.0

Q ss_pred             CCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         128 YKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       128 ~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +.+..++....|+|||+|.||.-.|.+|++.+-+|.++.|+-
T Consensus        22 ~~~l~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l   63 (262)
T COG1635          22 FEDLLDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL   63 (262)
T ss_pred             HHHHHhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence            334445666789999999999999999999999999999974

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.05  E-value=0.0028  Score=60.50  Aligned_cols=64  Identities=14%  Similarity=0.130  Sum_probs=52.5

Q ss_pred             CCC---ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC-cEEEcCEEEEcccCCCCCCC
Q psy2343          44 VYP---NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARY  111 (396)
Q Consensus        44 ~~p---~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g-~~~~~d~vvvAtG~~~~p~~  111 (396)
                      -||   +...+.+=|...+++.++.  |+++++|++|  ++++|.|.+.++ .++.+|+||||||..+.|+.
T Consensus        78 vfP~S~~A~sVv~~L~~~l~~~gV~--i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~  145 (376)
T TIGR03862        78 VFPVEMKAAPLLRAWLKRLAEQGVQ--FHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQL  145 (376)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcccccc
Confidence            467   5789999999999999998  9999999999  345698887543 45899999999999655443

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK06370 mercuric reductase; Validated

Probab=97.05  E-value=0.003  Score=62.73  Aligned_cols=32  Identities=31%  Similarity=0.367  Sum_probs=30.0

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      -.|+|||+|..|...|..+++.+.+|.++.+.
T Consensus         6 ~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   37 (463)
T PRK06370          6 YDAIVIGAGQAGPPLAARAAGLGMKVALIERG   37 (463)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            47999999999999999999999999999975

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.05  E-value=0.0018  Score=64.41  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -.|+|||+|..|...|..+++.+.+|.++.+.+
T Consensus         5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~   37 (471)
T PRK06467          5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYS   37 (471)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            379999999999999999999999999999864

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.01  E-value=0.0011  Score=58.02  Aligned_cols=36  Identities=19%  Similarity=0.229  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      +++||+|+|||||.+|.--+..|.+.+.+|+++...
T Consensus         6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470         6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            367999999999999999999999999999999754

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=96.99  E-value=0.0027  Score=63.14  Aligned_cols=32  Identities=19%  Similarity=0.289  Sum_probs=29.8

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      -+|+|||+|..|..+|..+++.+++|.++.+.
T Consensus         5 ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   36 (472)
T PRK05976          5 YDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG   36 (472)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            36999999999999999999999999999974

>TIGR02053 MerA mercuric reductase

Probab=96.97  E-value=0.0048  Score=61.23  Aligned_cols=31  Identities=19%  Similarity=0.369  Sum_probs=29.3

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .|+|||+|..|...|..+++.+.+|.++.+.
T Consensus         2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~   32 (463)
T TIGR02053         2 DLVIIGSGAAAFAAAIKAAELGASVAMVERG   32 (463)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5899999999999999999999999999975

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.97  E-value=0.00062  Score=71.63  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=33.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+|+|+|||+|..|+..|..|++.+.+|+++.+.+
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~  464 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH  464 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            468999999999999999999999999999999753

>KOG1399|consensus

Probab=96.96  E-value=0.0089  Score=58.40  Aligned_cols=39  Identities=28%  Similarity=0.361  Sum_probs=34.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC----ceeec
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG----YHYYP  174 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~----~~~~p  174 (396)
                      .++|+|||+|.+|.-.|.+|.+.+.+|+++.|++    .|..+
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~   48 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT   48 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence            5799999999999999999999999999999975    45544

>PRK10262 thioredoxin reductase; Provisional

Probab=96.96  E-value=0.0024  Score=60.12  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=29.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR  167 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r  167 (396)
                      +.++|+|||+|..|+..|..+++.+.+++++..
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~   37 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG   37 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe
Confidence            467899999999999999999998888888864

>KOG2755|consensus

Probab=96.95  E-value=0.0021  Score=56.84  Aligned_cols=32  Identities=25%  Similarity=0.375  Sum_probs=26.9

Q ss_pred             eEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~  169 (396)
                      +.+|||||..|+-+|..|+..  ..+|.+++-++
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass   34 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASS   34 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence            368999999999999999986  56788887765

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.95  E-value=0.00015  Score=63.08  Aligned_cols=32  Identities=22%  Similarity=0.417  Sum_probs=28.9

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||||..|+.+|..|++...+|+++.+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            69999999999999999999888999996654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.95  E-value=0.00068  Score=67.14  Aligned_cols=37  Identities=27%  Similarity=0.295  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .-.+|+|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus       137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~  173 (457)
T PRK11749        137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD  173 (457)
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence            3467899999999999999999999999999999875

>PTZ00188 adrenodoxin reductase; Provisional

Probab=96.94  E-value=0.0013  Score=64.48  Aligned_cols=35  Identities=23%  Similarity=0.156  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHh-cCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDAS-HHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~-~~~~~V~l~~r~~  169 (396)
                      +.++|+|||+|.+|+.+|..|+ +.+.+|+++.+.+
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p   73 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP   73 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            5789999999999999999865 4578899999986

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.93  E-value=0.00085  Score=66.24  Aligned_cols=37  Identities=24%  Similarity=0.274  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ...+++|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus       130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~  166 (449)
T TIGR01316       130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALH  166 (449)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            4568899999999999999999999999999999864

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=96.93  E-value=0.0055  Score=53.29  Aligned_cols=30  Identities=23%  Similarity=0.333  Sum_probs=23.9

Q ss_pred             EEEcCCCcHHHHHHHHhcCCCc-EEEEeccC
Q psy2343         140 LVVGAGNSGCDIAVDASHHSEK-VYHSTRRG  169 (396)
Q Consensus       140 vVVG~G~sa~d~a~~l~~~~~~-V~l~~r~~  169 (396)
                      +|||+|.+|+-+|..|.+.+.+ |.++.|.+
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~   31 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERND   31 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSS
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence            6999999999999999998877 99999874

...

>PRK14694 putative mercuric reductase; Provisional

Probab=96.93  E-value=0.0097  Score=59.13  Aligned_cols=31  Identities=26%  Similarity=0.415  Sum_probs=29.5

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .|+|||+|..|.-.|..+++.+.+|.++.+.
T Consensus         8 dviVIGaG~aG~~aA~~l~~~g~~v~lie~~   38 (468)
T PRK14694          8 HIAVIGSGGSAMAAALKATERGARVTLIERG   38 (468)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence            6999999999999999999999999999975

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.91  E-value=0.0024  Score=61.53  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=27.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcC--CC-cEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHH--SE-KVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~--~~-~V~l~~r~~  169 (396)
                      ++|+|||+|.||+.+|.+|.+.  .. .|.++.+++
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~   37 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRP   37 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccc
Confidence            5899999999999999999885  22 388888775

>PRK06847 hypothetical protein; Provisional

Probab=96.90  E-value=0.0051  Score=59.13  Aligned_cols=35  Identities=26%  Similarity=0.242  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .++|+|||+|.+|+-+|..|++.+.+|+++.|++.
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            46899999999999999999999999999998764

>PLN02546 glutathione reductase

Probab=96.90  E-value=0.0047  Score=62.45  Aligned_cols=30  Identities=20%  Similarity=0.263  Sum_probs=28.7

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTR  167 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r  167 (396)
                      .|+|||+|.-|...|..+++.+++|.++.+
T Consensus        81 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         81 DLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            599999999999999999999999999985

>PRK06753 hypothetical protein; Provisional

Probab=96.89  E-value=0.0055  Score=58.87  Aligned_cols=33  Identities=18%  Similarity=0.265  Sum_probs=31.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      +|+|||||.+|+=+|..|++.+.+|+++.|++.
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            799999999999999999999999999999874

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.85  E-value=0.0022  Score=55.91  Aligned_cols=36  Identities=22%  Similarity=0.344  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      +++||+|+|||||..|.-.+..|.+.+.+|+++.+.
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            468999999999999999999999988899999753

>PLN02463 lycopene beta cyclase

Probab=96.84  E-value=0.0032  Score=61.93  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=30.3

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      +|+|||+|.+|.-+|..|++.+.+|.++.+++.
T Consensus        30 DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~   62 (447)
T PLN02463         30 DLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL   62 (447)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence            799999999999999999998999999998653

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=96.84  E-value=0.0022  Score=68.40  Aligned_cols=35  Identities=20%  Similarity=0.269  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+++|+|||||..|+.+|..|++.+.+|+++.+++
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~  570 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE  570 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            57899999999999999999999999999999865

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG3851|consensus

Probab=96.83  E-value=0.0011  Score=60.16  Aligned_cols=38  Identities=24%  Similarity=0.338  Sum_probs=31.2

Q ss_pred             CCcceEe--CCeEEecCCcEecCcEEEEccCCCCCCCCCC
Q psy2343         250 DDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFPFID  287 (396)
Q Consensus       250 ~~i~~i~--~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~  287 (396)
                      ..|++++  .+.|++.+|++|..|.+|+|+|.+.++.-+.
T Consensus       112 ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~Ik  151 (446)
T KOG3851|consen  112 EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIK  151 (446)
T ss_pred             HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhc
Confidence            3455664  4789999999999999999999999887554

>PRK12831 putative oxidoreductase; Provisional

Probab=96.82  E-value=0.0014  Score=64.90  Aligned_cols=37  Identities=24%  Similarity=0.265  Sum_probs=33.6

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .-.+++|+|||+|..|+..|..|++.+.+|+++.+.+
T Consensus       137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~  173 (464)
T PRK12831        137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH  173 (464)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            4578999999999999999999999999999998754

>PTZ00058 glutathione reductase; Provisional

Probab=96.78  E-value=0.01  Score=60.06  Aligned_cols=31  Identities=26%  Similarity=0.428  Sum_probs=29.4

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .|+|||+|..|.-+|..+++.+.+|.++.+.
T Consensus        50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~   80 (561)
T PTZ00058         50 DLIVIGGGSGGMAAARRAARNKAKVALVEKD   80 (561)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence            6999999999999999999999999999975

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=96.78  E-value=0.0039  Score=59.12  Aligned_cols=59  Identities=20%  Similarity=0.188  Sum_probs=51.0

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .+...+.+.|...+++.|+.  ++.+++|++|..++++|+ |.+++|+ +.+|.||+|+|.++
T Consensus       144 i~~~~l~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s  203 (358)
T PF01266_consen  144 IDPRRLIQALAAEAQRAGVE--IRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS  203 (358)
T ss_dssp             EEHHHHHHHHHHHHHHTT-E--EEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred             ccccchhhhhHHHHHHhhhh--ccccccccchhhcccccccccccccc-cccceeEecccccc
Confidence            35689999999999999987  999999999999999999 9999998 99999999999854

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.76  E-value=0.0018  Score=64.66  Aligned_cols=36  Identities=25%  Similarity=0.214  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +.+++|+|||+|.+|+++|..|.+.+.+|+++.+++
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            568899999999999999999999999999998764

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.74  E-value=0.0015  Score=70.41  Aligned_cols=35  Identities=20%  Similarity=0.200  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++|+|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~  463 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH  463 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence            57899999999999999999999999999999864

>PRK06834 hypothetical protein; Provisional

Probab=96.72  E-value=0.0098  Score=59.38  Aligned_cols=59  Identities=20%  Similarity=0.332  Sum_probs=52.2

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ....+.+.|.+.++++++.  |+++++|++++.+++.+.|++.+|.++.+|+||.|.|.++
T Consensus        98 ~q~~le~~L~~~l~~~gv~--i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S  156 (488)
T PRK06834         98 WQNHIERILAEWVGELGVP--IYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRS  156 (488)
T ss_pred             cHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCC
Confidence            4678888999999888876  9999999999998888889887787899999999999966

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.70  E-value=0.0029  Score=60.39  Aligned_cols=36  Identities=22%  Similarity=0.184  Sum_probs=32.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+++|+|||+|.+|+++|..|++.+.+|+++.+.+.
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~   52 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE   52 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            578999999999999999999999999999998753

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=96.66  E-value=0.0062  Score=59.47  Aligned_cols=33  Identities=27%  Similarity=0.419  Sum_probs=30.0

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~~  170 (396)
                      +|+|||||.+|+=+|..|++.+. +|+++.|++.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~   35 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA   35 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence            79999999999999999999874 8999999864

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>TIGR00275 flavoprotein, HI0933 family

Probab=96.66  E-value=0.01  Score=57.68  Aligned_cols=61  Identities=20%  Similarity=0.266  Sum_probs=51.7

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVAR  110 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~  110 (396)
                      ...++.+.|...+++.++.  ++++++|++++++++.|.|++ ++.++.+|+||+|||.++.|.
T Consensus       103 ~a~~v~~~L~~~l~~~gv~--i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s~p~  163 (400)
T TIGR00275       103 SAADVLDALLNELKELGVE--ILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLSYPQ  163 (400)
T ss_pred             CHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcccCC
Confidence            4588999999999999887  999999999988777888887 455689999999999876543

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=96.62  E-value=0.0098  Score=60.05  Aligned_cols=32  Identities=34%  Similarity=0.563  Sum_probs=30.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||||..|+++|..+++.+.+|.++.+.+
T Consensus         6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~   37 (618)
T PRK05192          6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNL   37 (618)
T ss_pred             eEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence            69999999999999999999999999999873

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.022  Score=52.89  Aligned_cols=30  Identities=27%  Similarity=0.391  Sum_probs=25.6

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCc-EEEEec
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEK-VYHSTR  167 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~-V~l~~r  167 (396)
                      +|+|||+|..|+-.|..+++...+ +.++..
T Consensus         5 DviIIG~GPAGl~AAiya~r~~l~~~li~~~   35 (305)
T COG0492           5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEG   35 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCcEEEEec
Confidence            699999999999999999998766 555554

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=96.61  E-value=0.0059  Score=58.95  Aligned_cols=60  Identities=25%  Similarity=0.319  Sum_probs=51.2

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ......+...|...+.. |+.  ++++++|++|+.+++.|.|++.+|..+.+|.||+|+|.+.
T Consensus       131 ~idp~~~~~~l~~~~~~-G~~--i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~  190 (381)
T TIGR03197       131 WLSPPQLCRALLAHAGI-RLT--LHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA  190 (381)
T ss_pred             ccChHHHHHHHHhccCC-CcE--EEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence            44567888888888887 876  8999999999988788999998887789999999999865

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.55  E-value=0.0073  Score=58.02  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=32.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..|+++|||||.+|...|.+|++.+-+|+++.+.+
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep  157 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEP  157 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            35799999999999999999999999999999987

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.54  E-value=0.0047  Score=54.30  Aligned_cols=36  Identities=17%  Similarity=0.242  Sum_probs=31.5

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ..++++|+|||||..|..=+..|.+.+.+|+++...
T Consensus        22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~   57 (223)
T PRK05562         22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK   57 (223)
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            346899999999999999888999999999999743

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.53  E-value=0.002  Score=63.98  Aligned_cols=36  Identities=31%  Similarity=0.282  Sum_probs=32.9

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -.+++|+|||+|..|+..|..|++.+.+|+++.+.+
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~  174 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP  174 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            368999999999999999999999998999998875

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=96.52  E-value=0.0084  Score=57.29  Aligned_cols=58  Identities=22%  Similarity=0.413  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC-eEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~-~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      -.++..-++++.+.+|++  ++|+|+|+.|...++ ...|.+++|.++.+|+||+|.|+.+
T Consensus       172 l~~vvkni~~~l~~~G~e--i~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg  230 (486)
T COG2509         172 LPKVVKNIREYLESLGGE--IRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG  230 (486)
T ss_pred             hHHHHHHHHHHHHhcCcE--EEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch
Confidence            378999999999999988  999999999998754 4678888898899999999999854

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=96.50  E-value=0.005  Score=61.82  Aligned_cols=33  Identities=33%  Similarity=0.371  Sum_probs=27.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      |||+|||+|.||.=.|..|.+.+-+++++.+++
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~   34 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD   34 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCC
Confidence            799999999999999999999999999999975

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.39  E-value=0.0027  Score=65.51  Aligned_cols=35  Identities=29%  Similarity=0.316  Sum_probs=32.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|+|||+|..|+..|..|++.+.+|+++.+.+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence            58999999999999999999999999999999876

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=96.32  E-value=0.024  Score=56.22  Aligned_cols=31  Identities=32%  Similarity=0.397  Sum_probs=29.0

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .|+|||+|..|.-.|..+++.+++|.++.+.
T Consensus         5 DvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   35 (460)
T PRK06292          5 DVIVIGAGPAGYVAARRAAKLGKKVALIEKG   35 (460)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            6999999999999999999999999999873

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=96.31  E-value=0.016  Score=55.97  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=29.9

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      +|+|||+|.+|.-+|..|++.+.+|.++.+++.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~   33 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP   33 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence            489999999999999999998899999998753

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=96.30  E-value=0.041  Score=54.59  Aligned_cols=91  Identities=18%  Similarity=0.156  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCC--CCC-----Ccc
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPN--YSG-----YFS  119 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~--~~g-----~~~  119 (396)
                      .++.+++.+.++..+++  ++++++|++|+.++++..+.+.+|  .++.+|.||+|+|.  .|+...  +.+     ...
T Consensus       211 ~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~--~p~~~~l~~~~~gl~~~~~  286 (461)
T TIGR01350       211 AEVSKVVAKALKKKGVK--ILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGR--KPNTEGLGLENLGVELDER  286 (461)
T ss_pred             HHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCC--cccCCCCCcHhhCceECCC
Confidence            56778888888888887  999999999988777777776666  46899999999999  777652  222     112


Q ss_pred             cceeecccCCCCCCCCCCeEEEEcCCCc
Q psy2343         120 GEILHSMDYKSPDQIRNKRVLVVGAGNS  147 (396)
Q Consensus       120 g~~~hs~~~~~~~~~~~k~VvVVG~G~s  147 (396)
                      |.+.-. ++.   +-..+.|-++|....
T Consensus       287 g~i~vd-~~l---~t~~~~IyaiGD~~~  310 (461)
T TIGR01350       287 GRIVVD-EYM---RTNVPGIYAIGDVIG  310 (461)
T ss_pred             CcEeeC-CCc---ccCCCCEEEeeecCC
Confidence            322221 111   113467999997654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK05868 hypothetical protein; Validated

Probab=96.29  E-value=0.019  Score=55.32  Aligned_cols=34  Identities=29%  Similarity=0.222  Sum_probs=31.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      ++|+|||+|..|+-+|..|++.+.+|+++.+++.
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~   35 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG   35 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence            4799999999999999999999999999999864

>KOG2311|consensus

Probab=96.22  E-value=0.032  Score=53.67  Aligned_cols=31  Identities=29%  Similarity=0.584  Sum_probs=28.8

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .|+|||||..|||.|...++.+.+.++++.+
T Consensus        30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   30 DVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             cEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            6999999999999999999999998888875

>PRK09897 hypothetical protein; Provisional

Probab=96.21  E-value=0.013  Score=58.71  Aligned_cols=33  Identities=18%  Similarity=0.277  Sum_probs=28.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCC--cEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~--~V~l~~r~~  169 (396)
                      ++|+|||+|.+|+=+|..|++...  +|+++.++.
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~   36 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD   36 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence            589999999999999999987543  799999864

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=96.20  E-value=0.03  Score=54.37  Aligned_cols=32  Identities=25%  Similarity=0.460  Sum_probs=25.3

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||||++|+=+|..+++.+.+|.++.|.+
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~   33 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNK   33 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCc
Confidence            59999999999999999999999999999975

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.18  E-value=0.012  Score=59.70  Aligned_cols=33  Identities=12%  Similarity=0.271  Sum_probs=29.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -.|+|||||..|+..|..+++.+.+|+++.+..
T Consensus         5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~   37 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD   37 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            379999999999999999999999999998753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.17  E-value=0.0046  Score=63.98  Aligned_cols=36  Identities=22%  Similarity=0.239  Sum_probs=33.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -.+|+|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~  226 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE  226 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            357899999999999999999999999999999865

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=96.09  E-value=0.022  Score=55.36  Aligned_cols=60  Identities=20%  Similarity=0.292  Sum_probs=53.4

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .++..+.+.|.+.+...++.  ++++++|++++.+++.+.|++.+|.++.+|.||.|+|.++
T Consensus       108 i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S  167 (403)
T PRK07333        108 VENRVLINALRKRAEALGID--LREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARS  167 (403)
T ss_pred             eEhHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCCh
Confidence            46789999999999888876  8999999999988888999988888899999999999954

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.08  E-value=0.036  Score=54.34  Aligned_cols=33  Identities=27%  Similarity=0.378  Sum_probs=29.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -.|+|||||..|+|.|...++.+.++.+++-..
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~   37 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL   37 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence            379999999999999999999999998888753

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=96.08  E-value=0.01  Score=57.14  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=29.0

Q ss_pred             eEEEEcCCCcHHHHHHHH--hcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDA--SHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l--~~~~~~V~l~~r~~~  170 (396)
                      .|+|||+|.+|.-+|..|  ++.+.+|.++.+.+.
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~   35 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK   35 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            489999999999999999  667889999987653

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.03  E-value=0.0057  Score=47.10  Aligned_cols=36  Identities=31%  Similarity=0.319  Sum_probs=31.2

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      +++|++|+|||+|..|..-+..|.+.+.+|+++.+.
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            467999999999999999999999999999999876

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=95.98  E-value=0.026  Score=54.64  Aligned_cols=60  Identities=20%  Similarity=0.274  Sum_probs=52.4

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .++..+.+-|.+.+++.++.  ++++++|++++.+++.++|++++|+++.+|.||.|+|.++
T Consensus       110 v~~~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S  169 (392)
T PRK08773        110 VENDLLVDRLWAALHAAGVQ--LHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS  169 (392)
T ss_pred             EEhHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence            35678888888888888876  8999999999988888999888888899999999999965

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.97  E-value=0.0043  Score=64.29  Aligned_cols=36  Identities=28%  Similarity=0.311  Sum_probs=33.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+++|+|||+|.+|+-.|..|++.+.+|+++.+.+
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~  360 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP  360 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            368999999999999999999999999999999864

>TIGR00136 gidA glucose-inhibited division protein A

Probab=95.97  E-value=0.023  Score=57.42  Aligned_cols=32  Identities=31%  Similarity=0.531  Sum_probs=29.6

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|..|+++|..+++.+.+|.++.+.+
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~   33 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNL   33 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence            59999999999999999999999999999864

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.95  E-value=0.0065  Score=60.57  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -.+++|+|||+|.+|+.+|..|++.+.+|+++.+.+
T Consensus       141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~  176 (485)
T TIGR01317       141 RTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED  176 (485)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            357899999999999999999999998999998865

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.94  E-value=0.026  Score=47.52  Aligned_cols=36  Identities=25%  Similarity=0.330  Sum_probs=31.2

Q ss_pred             CCCCCeEEEEcCCCc-HHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAGNS-GCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G~s-a~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .+.||+|+|||+|.+ |.-+|..|.+.+.+|+++.|+
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            578999999999985 777999998887789998875

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK07588 hypothetical protein; Provisional

Probab=95.89  E-value=0.022  Score=55.17  Aligned_cols=34  Identities=21%  Similarity=0.132  Sum_probs=31.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+|+|||||.+|+=+|..|++.+.+|+++.|.+.
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            3799999999999999999999999999998864

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.89  E-value=0.056  Score=53.79  Aligned_cols=37  Identities=30%  Similarity=0.340  Sum_probs=33.6

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .-.+++|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus       140 ~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~  176 (471)
T PRK12810        140 KRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD  176 (471)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            3467899999999999999999999999999999875

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=95.88  E-value=0.019  Score=55.48  Aligned_cols=60  Identities=23%  Similarity=0.260  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC-eEEEEEccCcE-EEcCEEEEcccCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKK-KKYDFIAVCNGAQRVA  109 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~-~~~V~~~~g~~-~~~d~vvvAtG~~~~p  109 (396)
                      ..++...|...++..|..  ++||++|+.|++.++ .+.+.+.+|++ ++++.||+|.|.++.+
T Consensus       152 ~~~~t~~l~e~a~~~g~~--i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~  213 (429)
T COG0579         152 PGELTRALAEEAQANGVE--LRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADP  213 (429)
T ss_pred             HHHHHHHHHHHHHHcCCE--EEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence            355666666777777887  999999999999866 68888888876 8999999999997633

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=95.88  E-value=0.025  Score=54.28  Aligned_cols=62  Identities=18%  Similarity=0.167  Sum_probs=50.5

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCC
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVA  109 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p  109 (396)
                      +.....+...+.+.+.+.++.  ++++++|+++..+++.|.|+++++ ++.+|.||+|+|.+...
T Consensus       145 ~v~p~~~~~~~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~  206 (376)
T PRK11259        145 FLRPELAIKAHLRLAREAGAE--LLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKD  206 (376)
T ss_pred             EEcHHHHHHHHHHHHHHCCCE--EECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhh
Confidence            345567777777778788876  888999999998877899988877 58999999999996543

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=95.88  E-value=0.023  Score=56.56  Aligned_cols=60  Identities=17%  Similarity=0.276  Sum_probs=48.2

Q ss_pred             ChHHHHHHHHHHHHH----cCCCCceEeCcEEEEEEEe-CCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKK----FDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~----~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ....+.+.|.+.+++    .|..-.|+++++|++|++. ++.|.|++.+|. +.+|+||+|+|.++
T Consensus       209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G~-i~A~~VVvaAG~~S  273 (497)
T PTZ00383        209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRGE-IRARFVVVSACGYS  273 (497)
T ss_pred             CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCCE-EEeCEEEECcChhH
Confidence            456777777777777    6632238899999999987 667999998774 89999999999876

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=95.87  E-value=0.034  Score=53.61  Aligned_cols=59  Identities=14%  Similarity=0.197  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY  111 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~  111 (396)
                      +++..++...+++.++.  +.++++|.+++.+++.+.|++.+|+++.+|.||+|+|.  .|+.
T Consensus       183 ~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~--~p~~  241 (377)
T PRK04965        183 PEVSSRLQHRLTEMGVH--LLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL--RPNT  241 (377)
T ss_pred             HHHHHHHHHHHHhCCCE--EEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC--Ccch
Confidence            46778888888888987  88999999999877778888888888999999999998  6653

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.85  E-value=0.013  Score=51.26  Aligned_cols=36  Identities=25%  Similarity=0.262  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ++.||+|||||||..|.-=|..+++.+.+|+++..+
T Consensus         9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~   44 (210)
T COG1648           9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE   44 (210)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence            468999999999999999999999999999999754

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=95.83  E-value=0.037  Score=50.90  Aligned_cols=60  Identities=13%  Similarity=0.116  Sum_probs=50.4

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc-CcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-GKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~-g~~~~~d~vvvAtG~~~  107 (396)
                      .++.++.+.|.+.+.+.++.  ++++++|+++..+++.+.+.+.+ +.++++|+||+|+|.++
T Consensus        88 i~r~~l~~~l~~~~~~~gv~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        88 IDRDAFDEQLAERAQEAGAE--LRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             EEHHHHHHHHHHHHHHcCCE--EEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence            46789999999999998877  89999999998887777776654 35689999999999864

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PLN02697 lycopene epsilon cyclase

Probab=95.81  E-value=0.014  Score=58.53  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=29.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -+|+|||+|.+|+-+|..+++.+.+|.++.+..
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~  141 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL  141 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc
Confidence            379999999999999999999998999997653

>PRK07190 hypothetical protein; Provisional

Probab=95.80  E-value=0.037  Score=55.24  Aligned_cols=59  Identities=22%  Similarity=0.252  Sum_probs=51.5

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      +...+.+.|.+.++..++.  ++++++|++++.+++++.+++.+|+++.+++||.|+|.++
T Consensus       107 ~q~~le~~L~~~~~~~Gv~--v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S  165 (487)
T PRK07190        107 GQSYVEKLLDDKLKEAGAA--VKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS  165 (487)
T ss_pred             CHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence            4667888888888888887  9999999999998778888887887899999999999966

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=95.76  E-value=0.053  Score=51.07  Aligned_cols=61  Identities=21%  Similarity=0.184  Sum_probs=50.0

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE-EEEEccCcEEEcCEEEEcccCCCC
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELSNGKKKKYDFIAVCNGAQRV  108 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~-~V~~~~g~~~~~d~vvvAtG~~~~  108 (396)
                      +.....+...|.+.+...|..  ++++++|+.++..++.| .|.+.+| ++.+|.||+|+|.+..
T Consensus       133 ~v~p~~l~~~l~~~~~~~g~~--~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~  194 (337)
T TIGR02352       133 HVDPRALLKALEKALEKLGVE--IIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG  194 (337)
T ss_pred             eEChHHHHHHHHHHHHHcCCE--EEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence            446688888998999988887  89999999999876655 4666666 5899999999998653

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=95.76  E-value=0.041  Score=53.36  Aligned_cols=58  Identities=12%  Similarity=0.117  Sum_probs=49.7

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ....+.+.|...++..|+.  ++++++|++++..++.|.|.+.++ ++.+|.||+|+|.++
T Consensus       147 d~~~l~~aL~~~~~~~Gv~--i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s  204 (393)
T PRK11728        147 DYRAVAEAMAELIQARGGE--IRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS  204 (393)
T ss_pred             CHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence            4578888888888888876  899999999998777888888777 589999999999864

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=95.75  E-value=0.038  Score=53.18  Aligned_cols=59  Identities=20%  Similarity=0.170  Sum_probs=49.7

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .....+.+.|.+.++..++.  ++++++|++|+.+++.|.|++.++ ++.+|.||+|+|.+.
T Consensus       142 i~p~~~~~~l~~~~~~~g~~--~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~  200 (380)
T TIGR01377       142 LYAEKALRALQELAEAHGAT--VRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWT  200 (380)
T ss_pred             EcHHHHHHHHHHHHHHcCCE--EECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcch
Confidence            35568888888888888886  888999999998877888888766 589999999999864

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=95.73  E-value=0.032  Score=58.05  Aligned_cols=60  Identities=20%  Similarity=0.351  Sum_probs=50.1

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      +.....+.+.|.+.+.. ++.  ++++++|++++..++.|.|.+.++..+.+|.||+|+|.++
T Consensus       404 ~v~p~~l~~aL~~~a~~-Gv~--i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s  463 (662)
T PRK01747        404 WLCPAELCRALLALAGQ-QLT--IHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA  463 (662)
T ss_pred             eeCHHHHHHHHHHhccc-CcE--EEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence            34556778888777777 776  8899999999988888999888887678999999999965

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=95.67  E-value=0.062  Score=52.38  Aligned_cols=31  Identities=13%  Similarity=-0.062  Sum_probs=23.0

Q ss_pred             EEEEcCCCcHHHHH-HHHh----cCCCcEEEEeccC
Q psy2343         139 VLVVGAGNSGCDIA-VDAS----HHSEKVYHSTRRG  169 (396)
Q Consensus       139 VvVVG~G~sa~d~a-~~l~----~~~~~V~l~~r~~  169 (396)
                      =+|++.|..|+|.+ ..+.    +.+.+|+++.+.+
T Consensus       218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~p  253 (422)
T PRK05329        218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLP  253 (422)
T ss_pred             CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCC
Confidence            47889999999998 4443    3478899886654

>KOG1336|consensus

Probab=95.62  E-value=0.044  Score=52.83  Aligned_cols=34  Identities=12%  Similarity=0.234  Sum_probs=27.6

Q ss_pred             cCCcceEe--CCeEEecCCcEecCcEEEEccCCCCC
Q psy2343         249 KDDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRH  282 (396)
Q Consensus       249 ~~~i~~i~--~~~v~~~dG~~~~~D~VI~aTG~~~~  282 (396)
                      .+.|+.++  .+.|++.+|++++.|.+|+|||..+.
T Consensus       147 ~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~  182 (478)
T KOG1336|consen  147 GTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAK  182 (478)
T ss_pred             cceeEEeeccccEEEeCCCceeecceEEEeecCccc
Confidence            44566554  67899999999999999999999443

>KOG2495|consensus

Probab=95.61  E-value=0.04  Score=52.35  Aligned_cols=41  Identities=22%  Similarity=0.320  Sum_probs=34.3

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceee
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYY  173 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~  173 (396)
                      ..+.|+|||+|+|-.|+-++..|-..--+|+++..+.++.+
T Consensus        52 ~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlF   92 (491)
T KOG2495|consen   52 GGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLF   92 (491)
T ss_pred             CCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEE
Confidence            45678999999999999999998877778999998876543

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=95.52  E-value=0.048  Score=53.05  Aligned_cols=59  Identities=17%  Similarity=0.337  Sum_probs=49.6

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ++..+.+-|.+.+...++.  ++++++|++++.+++.|.|++.+|+++.+|.||.|.|.++
T Consensus       110 ~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S  168 (405)
T PRK05714        110 ENRVVQDALLERLHDSDIG--LLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANS  168 (405)
T ss_pred             EhHHHHHHHHHHHhcCCCE--EEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence            4567777777777776765  8899999999988888999988888899999999999966

>PLN02463 lycopene beta cyclase

Probab=95.51  E-value=0.053  Score=53.38  Aligned_cols=59  Identities=15%  Similarity=0.069  Sum_probs=50.7

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .++.++.++|.+.+...++.  + .+++|++|+..++.+.|++++|.++.+|.||.|+|..+
T Consensus       111 V~R~~L~~~Ll~~~~~~GV~--~-~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s  169 (447)
T PLN02463        111 VNRKKLKSKMLERCIANGVQ--F-HQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR  169 (447)
T ss_pred             EEHHHHHHHHHHHHhhcCCE--E-EeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence            46889999999999888875  4 36799999988888999999998899999999999954

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.50  E-value=0.061  Score=53.36  Aligned_cols=61  Identities=20%  Similarity=0.188  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC---cEEEcCEEEEcccCCCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNGAQRVARYPN  113 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g---~~~~~d~vvvAtG~~~~p~~P~  113 (396)
                      +++.+.+++.++..++.  ++++++|++|+.+++.+.+.+.++   +++.+|.||+|+|.  .|+...
T Consensus       213 ~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~--~p~~~~  276 (462)
T PRK06416        213 KEISKLAERALKKRGIK--IKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGR--RPNTEN  276 (462)
T ss_pred             HHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC--ccCCCC
Confidence            57888888888888987  999999999998766777776655   56899999999999  777653

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=95.49  E-value=0.058  Score=52.96  Aligned_cols=63  Identities=22%  Similarity=0.195  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNY  114 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~  114 (396)
                      -+++.+++....++.++.  ++++++|+.++..++...++++++.  ++++|.|++|+|.  +|+...+
T Consensus       213 D~ei~~~~~~~l~~~gv~--i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR--~Pn~~~L  277 (454)
T COG1249         213 DPEISKELTKQLEKGGVK--ILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGR--KPNTDGL  277 (454)
T ss_pred             CHHHHHHHHHHHHhCCeE--EEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCC--ccCCCCC
Confidence            478999999999997776  8999999999987665777777765  6889999999999  8888743

>PRK06834 hypothetical protein; Provisional

Probab=95.47  E-value=0.053  Score=54.15  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=31.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+|+|||+|.+|+=+|..|++.+-+|+++.|.+.
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~   37 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN   37 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            5799999999999999999999999999999763

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=95.46  E-value=0.047  Score=52.60  Aligned_cols=60  Identities=15%  Similarity=0.173  Sum_probs=52.0

Q ss_pred             CChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .++.++.+-|.+.+... ++.  ++++++|+++..+++.++|++++|.++.+|.||.|.|.++
T Consensus       102 i~r~~l~~~L~~~~~~~~gv~--~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  162 (382)
T TIGR01984       102 VELADLGQALLSRLALLTNIQ--LYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS  162 (382)
T ss_pred             EEcHHHHHHHHHHHHhCCCcE--EEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence            45788999999988874 776  8889999999988888999988888899999999999865

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=95.42  E-value=0.02  Score=55.64  Aligned_cols=32  Identities=25%  Similarity=0.309  Sum_probs=30.2

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||+|..|+=+|..|++.+-+|+++.+.+
T Consensus         4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            69999999999999999999999999999876

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=95.39  E-value=0.095  Score=50.71  Aligned_cols=59  Identities=22%  Similarity=0.251  Sum_probs=48.3

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc------C--cEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN------G--KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~------g--~~~~~d~vvvAtG~~~  107 (396)
                      ..++.+.++|.+.+...|+.  ++ .++|+++..+++.+.|++.+      +  .++.+|.||.|+|.++
T Consensus        89 ~~r~~fd~~L~~~a~~~G~~--v~-~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S  155 (388)
T TIGR02023        89 VRREVFDSYLRERAQKAGAE--LI-HGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS  155 (388)
T ss_pred             eeHHHHHHHHHHHHHhCCCE--EE-eeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence            67899999999999998876  64 45799998888888887753      2  3589999999999865

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=95.38  E-value=0.054  Score=52.36  Aligned_cols=60  Identities=17%  Similarity=0.271  Sum_probs=50.9

Q ss_pred             CChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .++..+.+.|.+.++.. ++.  ++++++|++++.+++.|.|++++++++++|.||.|.|.++
T Consensus       109 i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S  169 (391)
T PRK08020        109 VENRVLQLALWQALEAHPNVT--LRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANS  169 (391)
T ss_pred             EEcHHHHHHHHHHHHcCCCcE--EEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCc
Confidence            35678888888887776 665  8889999999888788999988888899999999999965

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=95.38  E-value=0.072  Score=52.84  Aligned_cols=60  Identities=28%  Similarity=0.213  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      .++.+++.+.+++.++.  ++++++|++++.+++.+.+++.+|+++.+|.||+|+|.  .|+..
T Consensus       216 ~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~--~p~~~  275 (461)
T PRK05249        216 DEISDALSYHLRDSGVT--IRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGR--TGNTD  275 (461)
T ss_pred             HHHHHHHHHHHHHcCCE--EEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecC--Ccccc
Confidence            57788888888888887  88999999998876778888777878999999999998  77754

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=95.37  E-value=0.097  Score=54.01  Aligned_cols=31  Identities=29%  Similarity=0.328  Sum_probs=29.3

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .|+|||+|.-|...|..+++.+.+|.++.+.
T Consensus       118 DviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        118 DVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            6999999999999999999999999999964

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.36  E-value=0.018  Score=47.98  Aligned_cols=34  Identities=21%  Similarity=0.280  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEe
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHST  166 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~  166 (396)
                      +++|++|+|||||..|...+..|.+.+.+|+++.
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            5689999999999999999999999989999985

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=95.36  E-value=0.07  Score=52.03  Aligned_cols=59  Identities=22%  Similarity=0.156  Sum_probs=47.3

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE-EEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~-~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .....+.+.|...+++.|+.  |+++++|++|+.+++.+ .|+++++ ++.+|.||+|+|.++
T Consensus       198 ~~p~~~~~~l~~~~~~~G~~--i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~  257 (416)
T PRK00711        198 GDCQLFTQRLAAMAEQLGVK--FRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS  257 (416)
T ss_pred             CCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence            34568888888888888887  88999999998876665 4666555 588999999999865

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=95.35  E-value=0.035  Score=54.20  Aligned_cols=59  Identities=15%  Similarity=0.262  Sum_probs=48.3

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV  108 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~  108 (396)
                      .++.++.+.|...+..    ..++++++|++|+.++++|+|+.++|.++++|.||.|.|.++.
T Consensus       102 i~R~~l~~~L~~~~~~----~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~  160 (414)
T TIGR03219       102 VHRADFLDALLKHLPE----GIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA  160 (414)
T ss_pred             CCHHHHHHHHHHhCCC----ceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence            4567788877766532    2378999999999888889999988888999999999999763

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=95.33  E-value=0.066  Score=51.73  Aligned_cols=60  Identities=15%  Similarity=0.185  Sum_probs=50.7

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .++..+.+.|.+.+.+++..  .+++++|++++.+++.|.|++++++++.+|.||.|.|.++
T Consensus       108 i~~~~l~~~L~~~~~~~~~~--~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S  167 (388)
T PRK07494        108 IPNWLLNRALEARVAELPNI--TRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNS  167 (388)
T ss_pred             eEhHHHHHHHHHHHhcCCCc--EEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCc
Confidence            45678888888888877533  4789999999988888999998888899999999999965

>PRK13984 putative oxidoreductase; Provisional

Probab=95.30  E-value=0.013  Score=60.15  Aligned_cols=36  Identities=25%  Similarity=0.259  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -.+|+|+|||+|..|...|..|.+.+.+|+++.+.+
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~  316 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLS  316 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            368899999999999999999999999999998765

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=95.30  E-value=0.074  Score=51.83  Aligned_cols=58  Identities=14%  Similarity=0.194  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC-----cEEEcCEEEEcccCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-----KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g-----~~~~~d~vvvAtG~~~  107 (396)
                      ...+...|...+++.|+.  ++++++|++++..++.|.+.+.++     .++.+|.||+|+|.++
T Consensus       196 ~~~~~~~l~~~a~~~G~~--i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s  258 (410)
T PRK12409        196 IHKFTTGLAAACARLGVQ--FRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS  258 (410)
T ss_pred             HHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence            456777778888888987  889999999998777888766443     2589999999999864

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=95.29  E-value=0.024  Score=55.00  Aligned_cols=33  Identities=21%  Similarity=0.234  Sum_probs=29.7

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~~  170 (396)
                      +|+|||+|.+|+=+|..|++.+  -+|+++.+++.
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            5999999999999999999974  78999999863

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=95.29  E-value=0.058  Score=51.90  Aligned_cols=60  Identities=17%  Similarity=0.299  Sum_probs=51.9

Q ss_pred             CChHHHHHHHHHHHHHcC-CCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~-l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .++.++.+-|.+.+...+ +.  ++++++|++++..++.+.|++++|+++.+|.||.|.|.++
T Consensus       103 i~r~~l~~~L~~~~~~~~~~~--v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S  163 (385)
T TIGR01988       103 VENRVLQQALWERLQEYPNVT--LLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS  163 (385)
T ss_pred             EEcHHHHHHHHHHHHhCCCcE--EecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence            467788888888888776 65  8999999999988888999888888899999999999965

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=95.28  E-value=0.027  Score=55.33  Aligned_cols=32  Identities=25%  Similarity=0.350  Sum_probs=30.2

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+=+|..|++.+.+|.++.|.+
T Consensus         7 DViIVGaGpAG~~aA~~La~~G~~V~llEr~~   38 (428)
T PRK10157          7 DAIIVGAGLAGSVAALVLAREGAQVLVIERGN   38 (428)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence            79999999999999999999999999999875

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=95.28  E-value=0.037  Score=53.53  Aligned_cols=32  Identities=28%  Similarity=0.344  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .+|+|||||.+|+=+|..|++.+-+|+++.+.
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            57999999999999999999999999999997

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.27  E-value=0.014  Score=59.56  Aligned_cols=37  Identities=24%  Similarity=0.224  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .-.|++|+|||+|..|+-+|..|++.+.+|+++.+.+
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~  170 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP  170 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            3468999999999999999999999888999998764

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=95.25  E-value=0.11  Score=50.35  Aligned_cols=58  Identities=10%  Similarity=0.047  Sum_probs=46.6

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEccC--cEEEcCEEEEcccCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNG--KKKKYDFIAVCNGAQ  106 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~~g--~~~~~d~vvvAtG~~  106 (396)
                      .+..+.+-|.+.+++.|..  +..+++|++++.++++++ |.++++  .++.+|.||+|||.+
T Consensus       261 ~G~RL~~aL~~~~~~~Gg~--il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw  321 (419)
T TIGR03378       261 LGIRLEEALKHRFEQLGGV--MLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF  321 (419)
T ss_pred             cHHHHHHHHHHHHHHCCCE--EEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence            3677777788888898876  888899999998766555 555665  368999999999995

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK07588 hypothetical protein; Provisional

Probab=95.21  E-value=0.062  Score=52.01  Aligned_cols=60  Identities=13%  Similarity=0.271  Sum_probs=48.7

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV  108 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~  108 (396)
                      .++.++.+.|.+.+.. ++.  |+++++|++++.+++.++|++++|+++.+|.||.|.|.++.
T Consensus       100 i~r~~l~~~L~~~~~~-~v~--i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~  159 (391)
T PRK07588        100 LPRGDLAAAIYTAIDG-QVE--TIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH  159 (391)
T ss_pred             EEHHHHHHHHHHhhhc-CeE--EEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence            3567777777665433 444  89999999999888889999999988899999999999663

>PRK06184 hypothetical protein; Provisional

Probab=95.14  E-value=0.076  Score=53.29  Aligned_cols=59  Identities=14%  Similarity=0.169  Sum_probs=49.1

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE---ccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL---SNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~---~~g~~~~~d~vvvAtG~~~  107 (396)
                      ++..+.+-|.+.+.+.++.  |+++++|++++.+++.+++++   .+++++++|+||.|+|.++
T Consensus       107 ~q~~le~~L~~~l~~~gv~--i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S  168 (502)
T PRK06184        107 PQWRTERILRERLAELGHR--VEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRS  168 (502)
T ss_pred             CHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCch
Confidence            4567778888888888876  999999999998877787776   4556789999999999976

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=95.12  E-value=0.089  Score=51.65  Aligned_cols=59  Identities=17%  Similarity=0.081  Sum_probs=48.9

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .+.++.++|.+.+++.|+.  ++.+++|+++..+++.+.+...++.++.+|.||+|+|.++
T Consensus       106 ~R~~fD~~L~~~a~~~Gv~--i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s  164 (428)
T PRK10157        106 LRSKFDAWLMEQAEEAGAQ--LITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS  164 (428)
T ss_pred             EHHHHHHHHHHHHHHCCCE--EECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence            5788999999999999987  8899999999877666654445666789999999999843

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=95.11  E-value=0.073  Score=52.80  Aligned_cols=59  Identities=20%  Similarity=0.146  Sum_probs=48.7

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV  108 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~  108 (396)
                      .+...+.+-|.+.+++.|+.  |+.+++|+.|+. ++.|.|++.+|. +.+|.||+|||.++.
T Consensus       180 i~P~~l~~~L~~~a~~~Gv~--i~~~t~V~~i~~-~~~~~v~t~~g~-v~A~~VV~Atga~s~  238 (460)
T TIGR03329       180 VQPGLLVRGLRRVALELGVE--IHENTPMTGLEE-GQPAVVRTPDGQ-VTADKVVLALNAWMA  238 (460)
T ss_pred             ECHHHHHHHHHHHHHHcCCE--EECCCeEEEEee-CCceEEEeCCcE-EECCEEEEccccccc
Confidence            35677888888888899987  889999999986 456888887774 899999999998754

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PLN02507 glutathione reductase

Probab=95.11  E-value=0.1  Score=52.22  Aligned_cols=61  Identities=13%  Similarity=0.064  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      .+++.+++.+..++.+++  ++++++|++++.++++..|.+.+|+++.+|.|++|+|.  .|+..
T Consensus       243 d~~~~~~l~~~l~~~GI~--i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~--~pn~~  303 (499)
T PLN02507        243 DDEMRAVVARNLEGRGIN--LHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGR--APNTK  303 (499)
T ss_pred             CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecC--CCCCC
Confidence            467888888888888987  99999999998776677787777878999999999999  77765

>PRK08244 hypothetical protein; Provisional

Probab=95.08  E-value=0.1  Score=52.26  Aligned_cols=60  Identities=20%  Similarity=0.220  Sum_probs=49.8

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc--cC-cEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS--NG-KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~--~g-~~~~~d~vvvAtG~~~  107 (396)
                      .++..+.+.|.+.++..++.  ++++++|++++.+++..+|++.  +| +++++|+||.|.|..+
T Consensus        97 i~q~~le~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S  159 (493)
T PRK08244         97 LPQAETEKVLEEHARSLGVE--IFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGS  159 (493)
T ss_pred             ecHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence            35678889999999888876  9999999999988777777664  35 4689999999999966

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=95.04  E-value=0.082  Score=52.78  Aligned_cols=59  Identities=19%  Similarity=0.365  Sum_probs=46.7

Q ss_pred             ChHHHHHHHHHHHHHcC-CCCceEeCcEEEEEEEe-CCeEEEEEcc---Cc--EEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQY-EDIWEVELSN---GK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~-l~~~i~~~t~V~~v~~~-~~~~~V~~~~---g~--~~~~d~vvvAtG~~~  107 (396)
                      ....+.+-|...+++.+ +.  |+++++|++++.. ++.|.|++.+   |+  ++.+++||+|+|.++
T Consensus       181 d~~~l~~aL~~~a~~~Ggv~--i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s  246 (494)
T PRK05257        181 NFGALTRQLVGYLQKQGNFE--LQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA  246 (494)
T ss_pred             CHHHHHHHHHHHHHhCCCeE--EEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence            34578888888888876 66  8999999999986 4459887643   53  589999999999976

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=94.98  E-value=0.091  Score=52.37  Aligned_cols=59  Identities=22%  Similarity=0.358  Sum_probs=47.0

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEc---cC--cEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELS---NG--KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~---~g--~~~~~d~vvvAtG~~~  107 (396)
                      ....+.+.|.+.++..|+.  |+++++|++++++ ++.|.|++.   ++  .++.+|+||+|+|.++
T Consensus       176 dp~~l~~aL~~~a~~~Gv~--i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s  240 (483)
T TIGR01320       176 DFGALTKQLLGYLVQNGTT--IRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA  240 (483)
T ss_pred             CHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence            4577888888888888877  9999999999986 457988653   23  2589999999999865

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.97  E-value=0.08  Score=48.61  Aligned_cols=37  Identities=22%  Similarity=0.230  Sum_probs=32.0

Q ss_pred             CCCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEecc
Q psy2343         132 DQIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .+++||+|+|||.|. .|-=+|..|...+..|++++|+
T Consensus       155 i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~  192 (283)
T PRK14192        155 IELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR  192 (283)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            367899999999998 8999999998876699999874

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=94.97  E-value=0.11  Score=51.54  Aligned_cols=61  Identities=13%  Similarity=0.120  Sum_probs=51.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      ..++.++++...+..++.  ++++++|++|+.+++...|...+|+++.+|.|++|+|.  .|+..
T Consensus       217 d~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~--~pn~~  277 (466)
T PRK07845        217 DADAAEVLEEVFARRGMT--VLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGS--VPNTA  277 (466)
T ss_pred             CHHHHHHHHHHHHHCCcE--EEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecC--CcCCC
Confidence            357788888888888987  88999999998776677777778888999999999999  77765

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=94.91  E-value=0.42  Score=47.60  Aligned_cols=61  Identities=11%  Similarity=0.047  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc--C--cEEEcCEEEEcccCCCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN--G--KKKKYDFIAVCNGAQRVARYPN  113 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~--g--~~~~~d~vvvAtG~~~~p~~P~  113 (396)
                      .++.+.+.+..++.+++  ++.+++|++|+.+++...|...+  |  .++.+|.|++|+|.  .|+.+.
T Consensus       224 ~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~--~p~~~~  288 (475)
T PRK06327        224 EQVAKEAAKAFTKQGLD--IHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR--VPNTDG  288 (475)
T ss_pred             HHHHHHHHHHHHHcCcE--EEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC--ccCCCC
Confidence            57778888888888887  89999999998876666666543  3  35899999999998  887663

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=94.85  E-value=0.098  Score=52.08  Aligned_cols=59  Identities=22%  Similarity=0.418  Sum_probs=43.8

Q ss_pred             ChHHHHHHHHHHHHH-cCCCCceEeCcEEEEEEEe-CCeEEEEE---ccCc--EEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQY-EDIWEVEL---SNGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~-~~l~~~i~~~t~V~~v~~~-~~~~~V~~---~~g~--~~~~d~vvvAtG~~~  107 (396)
                      ....+.+-|...+.+ -++.  ++++++|+++++. ++.|+|+.   .++.  ++.+|+||+|.|.++
T Consensus       182 D~~~L~~aL~~~l~~~~Gv~--i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS  247 (497)
T PRK13339        182 NFGALTRKLAKHLESHPNAQ--VKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA  247 (497)
T ss_pred             CHHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence            345566555555543 3665  8999999999987 77899873   3442  589999999999976

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=94.80  E-value=0.11  Score=50.21  Aligned_cols=58  Identities=17%  Similarity=0.183  Sum_probs=48.7

Q ss_pred             ChHHHHHHHHHHHHHcC-CCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~-l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .+..+.+.|.+.++..+ +.  ++ +++|++++.+++.+.|++.+|.++.+|.||.|+|.++
T Consensus       109 ~~~~l~~~L~~~~~~~~~v~--~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S  167 (388)
T PRK07608        109 ESSLIERALWAALRFQPNLT--WF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHS  167 (388)
T ss_pred             EhHHHHHHHHHHHHhCCCcE--EE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence            46788888888888776 54  55 9999999887788999998887899999999999965

>PRK08163 salicylate hydroxylase; Provisional

Probab=94.75  E-value=0.094  Score=50.79  Aligned_cols=62  Identities=21%  Similarity=0.120  Sum_probs=51.4

Q ss_pred             CChHHHHHHHHHHHHHcC-CCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVA  109 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~-l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p  109 (396)
                      .++.++.+.|.+.+...+ +.  ++++++|++++.+++.+.|++.+|+++.+|.||.|.|.++..
T Consensus       106 i~r~~l~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~  168 (396)
T PRK08163        106 IHRADIHLSLLEAVLDHPLVE--FRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVV  168 (396)
T ss_pred             EEHHHHHHHHHHHHHhcCCcE--EEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHH
Confidence            367888888888887664 55  889999999998777888888888889999999999996643

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=94.75  E-value=0.031  Score=39.35  Aligned_cols=29  Identities=24%  Similarity=0.272  Sum_probs=26.7

Q ss_pred             EEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         141 VVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       141 VVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      |||+|.+|+-+|..|++.+.+|+++.+++
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~   29 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKND   29 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence            89999999999999999999999999986

...

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=94.74  E-value=0.03  Score=54.14  Aligned_cols=35  Identities=29%  Similarity=0.277  Sum_probs=32.0

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCce
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH  171 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~  171 (396)
                      ++|+|||||..|+++|..|++.+.+|+++.+++..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            58999999999999999999999999999987643

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=94.73  E-value=0.076  Score=51.50  Aligned_cols=55  Identities=16%  Similarity=0.082  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      +..-+...++..+.  .|+++++|++|+.++++++|++.+|+++.||+||+|+....
T Consensus       211 ~~~~~~~~~~~~g~--~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  265 (450)
T PF01593_consen  211 LSLALALAAEELGG--EIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSV  265 (450)
T ss_dssp             THHHHHHHHHHHGG--GEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHH
T ss_pred             hhHHHHHHHhhcCc--eeecCCcceeccccccccccccccceEEecceeeecCchhh
Confidence            33344455555554  49999999999999999999999998999999999999843

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.66  E-value=0.11  Score=47.47  Aligned_cols=37  Identities=16%  Similarity=0.239  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++||+|+|||.|. .|.-+|..|...+..|++++++.
T Consensus       155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t  192 (286)
T PRK14175        155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS  192 (286)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence            57899999999988 99999999998888999998753

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=94.66  E-value=0.097  Score=51.84  Aligned_cols=56  Identities=18%  Similarity=0.214  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343          50 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        50 ~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      -+....+..+++++- ..|+++++|++|+..+++|+|++++|+++.||+||+|+-..
T Consensus       223 G~~~l~~~l~~~l~~-~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~  278 (462)
T TIGR00562       223 GLETLPEEIEKRLKL-TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK  278 (462)
T ss_pred             hHHHHHHHHHHHhcc-CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence            344555555555541 34999999999999888899998888778999999998863

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=94.61  E-value=0.12  Score=49.97  Aligned_cols=59  Identities=17%  Similarity=0.160  Sum_probs=48.3

Q ss_pred             ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .+..+.+.|.+.+... ++.  ++++++|+++...++.|.|+++++..+.+|.||.|.|.++
T Consensus       110 ~~~~l~~~l~~~~~~~~g~~--~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S  169 (395)
T PRK05732        110 ELHDVGQRLFALLDKAPGVT--LHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS  169 (395)
T ss_pred             EhHHHHHHHHHHHhcCCCcE--EEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence            4566777777776654 555  8899999999888888999998887899999999999965

>KOG2820|consensus

Probab=94.60  E-value=0.14  Score=47.37  Aligned_cols=77  Identities=19%  Similarity=0.178  Sum_probs=60.8

Q ss_pred             CCCCCCCCC-------CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe---CCeEEEEEccCcEEEcCEEEEccc
Q psy2343          35 DYPMPDNYP-------VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNG  104 (396)
Q Consensus        35 ~~p~p~~~~-------~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~---~~~~~V~~~~g~~~~~d~vvvAtG  104 (396)
                      -+|+|+++.       ++.....-+.-++.++.+.|..  ++.+.+|+.++..   +....|.|.+|..+.++.+|+++|
T Consensus       132 ~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~~G~i--~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~G  209 (399)
T KOG2820|consen  132 NIPLPDGWQGVVNESGGVINAAKSLKALQDKARELGVI--FRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVG  209 (399)
T ss_pred             CccCCcchhhcccccccEeeHHHHHHHHHHHHHHcCeE--EecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEec
Confidence            455665543       4456788999999999999987  8999999998875   445678888888899999999999


Q ss_pred             CCCCCCCCC
Q psy2343         105 AQRVARYPN  113 (396)
Q Consensus       105 ~~~~p~~P~  113 (396)
                      .+.....|.
T Consensus       210 aWi~klL~~  218 (399)
T KOG2820|consen  210 AWINKLLPT  218 (399)
T ss_pred             HHHHhhcCc
Confidence            976555664

>PRK10637 cysG siroheme synthase; Provisional

Probab=94.57  E-value=0.052  Score=53.64  Aligned_cols=35  Identities=20%  Similarity=0.259  Sum_probs=31.2

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR  167 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r  167 (396)
                      +++||+|+|||||..|.-=+..|.+.+.+|+++..
T Consensus         9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp   43 (457)
T PRK10637          9 QLRDRDCLLVGGGDVAERKARLLLDAGARLTVNAL   43 (457)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence            56899999999999999988888888889999864

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=94.56  E-value=0.024  Score=55.67  Aligned_cols=37  Identities=32%  Similarity=0.348  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ...+|+|+|||+|.-|..+|..|++.+..|+++.|.+
T Consensus       120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~  156 (457)
T COG0493         120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA  156 (457)
T ss_pred             CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence            4567999999999999999999999999999998865

>KOG0399|consensus

Probab=94.54  E-value=0.067  Score=56.59  Aligned_cols=37  Identities=24%  Similarity=0.298  Sum_probs=34.1

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .-.||+|+|||+|.+|.-+|..|-+.+..|++..|+.
T Consensus      1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred             cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence            3469999999999999999999999999999999986

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=94.52  E-value=0.13  Score=52.20  Aligned_cols=60  Identities=27%  Similarity=0.443  Sum_probs=50.1

Q ss_pred             ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEc--cC--cEEEcCEEEEcccCCCC
Q psy2343          47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELS--NG--KKKKYDFIAVCNGAQRV  108 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~--~g--~~~~~d~vvvAtG~~~~  108 (396)
                      ++.++.++|.+.+.++ ++.  |+++++|++++.++++++|+++  +|  .++++|+||.|.|.++.
T Consensus       111 ~q~~le~~L~~~~~~~~gv~--v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~  175 (538)
T PRK06183        111 HQPLLEAVLRAGLARFPHVR--VRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF  175 (538)
T ss_pred             ChHHHHHHHHHHHHhCCCcE--EEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence            5678888998888876 666  9999999999998888888876  45  35899999999999764

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=94.51  E-value=0.14  Score=49.51  Aligned_cols=59  Identities=12%  Similarity=0.091  Sum_probs=49.8

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ..+..+.++|.+.+...++.  + +.++|+.+... ++.|.|++++|.++++|.||.|+|..+
T Consensus        82 i~~~~l~~~l~~~~~~~gv~--~-~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        82 VDSTRLHEELLQKCPEGGVL--W-LERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             EcHHHHHHHHHHHHHhcCcE--E-EccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence            46789999999999888764  4 57789998877 778999998887899999999999954

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>KOG4716|consensus

Probab=94.51  E-value=0.17  Score=46.70  Aligned_cols=29  Identities=28%  Similarity=0.418  Sum_probs=26.7

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEe
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHST  166 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~  166 (396)
                      ..+|||||.-|.-+|.+.+..+++|-++.
T Consensus        21 DLIviGgGSgGLacaKeAa~~G~kV~~lD   49 (503)
T KOG4716|consen   21 DLIVIGGGSGGLACAKEAADLGAKVACLD   49 (503)
T ss_pred             cEEEEcCCcchhhHHHHHHhcCCcEEEEe
Confidence            69999999999999999999999988774

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.45  E-value=0.054  Score=43.91  Aligned_cols=37  Identities=27%  Similarity=0.455  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      .+++++|+|||+|..|--++..|...+ ++|+++.|+.
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            578999999999999999999999874 5699999874

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=94.45  E-value=0.14  Score=50.39  Aligned_cols=54  Identities=20%  Similarity=0.231  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343          51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      +...++..++..+.. .|+++++|++|+..+++|.|++.+|+++.||+||+|+-.
T Consensus       220 ~~~l~~~l~~~l~~~-~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~  273 (451)
T PRK11883        220 LQSLIEALEEKLPAG-TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPH  273 (451)
T ss_pred             HHHHHHHHHHhCcCC-eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCH
Confidence            344444555544321 599999999999888889998888888999999999876

>PRK06753 hypothetical protein; Provisional

Probab=94.44  E-value=0.092  Score=50.38  Aligned_cols=58  Identities=19%  Similarity=0.389  Sum_probs=49.3

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .++..+.+.|.+.+..  .  .|+++++|++|+.+++.+.|++++|+++.+|.||-|.|.++
T Consensus        95 i~R~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S  152 (373)
T PRK06753         95 LHRQTLIDIIKSYVKE--D--AIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS  152 (373)
T ss_pred             ccHHHHHHHHHHhCCC--c--eEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence            4678888888877653  2  38999999999988888999998898899999999999865

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=94.35  E-value=0.27  Score=44.12  Aligned_cols=146  Identities=14%  Similarity=0.152  Sum_probs=75.5

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCce---eecCCCCCCChhHHHHhhCccccC-hHHHHHHHHHHHHHhcCC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH---YYPKFIDGKPTPQWMLQLGNKFSS-KEETMAYIKQVFKLAGFD  213 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~---~~p~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~  213 (396)
                      .|+|||+|.-|+-+|..|...+.+|+++.++...   ...|...+-..|.-.    ..++. .+.+.++.+.+.+.-.-+
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGA----qYfk~~~~~F~~~Ve~~~~~glV~   78 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGA----QYFKPRDELFLRAVEALRDDGLVD   78 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccc----eeecCCchHHHHHHHHHHhCCcee
Confidence            5899999999999999999999999999986421   111111111111100    00100 122223333333221100


Q ss_pred             ---CCCCCC-----C-CCCCCCCcccCccCchhhhcccCCCeEecCCcceEeC--C--eEEecCCcE-ecCcEEEEccCC
Q psy2343         214 ---GVDYGL-----K-KPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N--IVHFVDDTH-IEVDTIIYATGY  279 (396)
Q Consensus       214 ---~~~~~~-----~-~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~--~--~v~~~dG~~-~~~D~VI~aTG~  279 (396)
                         +..|+.     + .+....+...|-++.-...+...-+|....+|+++..  +  .++.+||+. ..+|.|+++.--
T Consensus        79 ~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PA  158 (331)
T COG3380          79 VWTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPA  158 (331)
T ss_pred             eccccccccccCCCCCCCCCCccccCcchHHHHHHHhccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCC
Confidence               111111     1 1111113333434433333334446666667776642  2  377777775 789999998765


Q ss_pred             CCCCCCCC
Q psy2343         280 NRHFPFID  287 (396)
Q Consensus       280 ~~~~~~l~  287 (396)
                      -...++|.
T Consensus       159 PQ~~~LLt  166 (331)
T COG3380         159 PQTATLLT  166 (331)
T ss_pred             CcchhhcC
Confidence            55555664

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=94.30  E-value=0.056  Score=44.87  Aligned_cols=37  Identities=27%  Similarity=0.317  Sum_probs=29.3

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+.||+++|+|-|..|--+|..|...+.+|++....|
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            4689999999999999999999999999999998865

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK09126 hypothetical protein; Provisional

Probab=94.30  E-value=0.17  Score=48.89  Aligned_cols=59  Identities=12%  Similarity=0.129  Sum_probs=46.5

Q ss_pred             ChHHHHHHHHHHHH-HcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAK-KFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~-~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ++..+.+-|.+.+. ..++.  |+++++|++++.+++.+.|++++|+++.+|.||.|.|.++
T Consensus       108 ~~~~l~~~l~~~~~~~~g~~--i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S  167 (392)
T PRK09126        108 PNHLIRRAAYEAVSQQDGIE--LLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFS  167 (392)
T ss_pred             eHHHHHHHHHHHHhhCCCcE--EEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCc
Confidence            44556655555553 34666  9999999999988778889888888899999999999954

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=94.29  E-value=0.18  Score=49.69  Aligned_cols=59  Identities=15%  Similarity=0.183  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      .++.+.+.+.+++.++.  ++++++|++|+.+++.+.+.+++++ +.+|.|++|+|.  .|+..
T Consensus       199 ~~~~~~l~~~l~~~gV~--v~~~~~v~~i~~~~~~v~v~~~~g~-i~~D~vl~a~G~--~pn~~  257 (441)
T PRK08010        199 RDIADNIATILRDQGVD--IILNAHVERISHHENQVQVHSEHAQ-LAVDALLIASGR--QPATA  257 (441)
T ss_pred             HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCEEEEEEcCCe-EEeCEEEEeecC--CcCCC
Confidence            57888888889998987  8999999999887666777665554 789999999999  77754

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=94.28  E-value=0.041  Score=53.45  Aligned_cols=33  Identities=24%  Similarity=0.243  Sum_probs=30.8

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      +|+|||||..|+++|..|++.+.+|+++.+++.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            699999999999999999999999999998764

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK06185 hypothetical protein; Provisional

Probab=94.25  E-value=0.17  Score=49.25  Aligned_cols=61  Identities=18%  Similarity=0.226  Sum_probs=47.2

Q ss_pred             CCChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeE-EEEE--ccCc-EEEcCEEEEcccCCC
Q psy2343          45 YPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIW-EVEL--SNGK-KKKYDFIAVCNGAQR  107 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~-~V~~--~~g~-~~~~d~vvvAtG~~~  107 (396)
                      +.++.++.++|.+.+++. ++.  ++++++|+++..+++.+ .|++  .+|+ ++.+|.||.|.|.++
T Consensus       104 ~v~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S  169 (407)
T PRK06185        104 MMPQWDFLDFLAEEASAYPNFT--LRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHS  169 (407)
T ss_pred             EeehHHHHHHHHHHHhhCCCcE--EEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCch
Confidence            456788999999988776 665  88999999998876554 2333  3554 689999999999976

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.21  E-value=0.22  Score=49.49  Aligned_cols=60  Identities=18%  Similarity=0.180  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc--cC--cEEEcCEEEEcccCCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS--NG--KKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~--~g--~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      .++.+++.+..++.+++  ++++++|++++.+++...+++.  +|  .++.+|.||+|+|.  .|+..
T Consensus       213 ~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~--~pn~~  276 (466)
T PRK07818        213 AEVSKEIAKQYKKLGVK--ILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF--APRVE  276 (466)
T ss_pred             HHHHHHHHHHHHHCCCE--EEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc--ccCCC
Confidence            56788888888888988  9999999999876666666554  55  35899999999998  77765

>PRK11445 putative oxidoreductase; Provisional

Probab=94.04  E-value=0.24  Score=47.19  Aligned_cols=60  Identities=15%  Similarity=0.170  Sum_probs=47.6

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEcCEEEEcccCCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQRV  108 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~-~~g~--~~~~d~vvvAtG~~~~  108 (396)
                      .++.++.+.|.+.+ ..++.  ++++++|+.++..++.|.|+. ++|+  ++++|.||.|+|..+.
T Consensus        96 i~R~~~~~~L~~~~-~~gv~--v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~  158 (351)
T PRK11445         96 IDRHKFDLWLKSLI-PASVE--VYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM  158 (351)
T ss_pred             ccHHHHHHHHHHHH-hcCCE--EEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence            56788888888754 44565  889999999998888899886 4554  5889999999999653

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=94.02  E-value=0.25  Score=48.64  Aligned_cols=61  Identities=18%  Similarity=0.099  Sum_probs=46.2

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCe---EEEEEccCc--EEEcCEEEEcccCCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDI---WEVELSNGK--KKKYDFIAVCNGAQRV  108 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~---~~V~~~~g~--~~~~d~vvvAtG~~~~  108 (396)
                      ..+.++.+.|...+++.+++  ++++++|+++..+ +++   ..+...+++  .+.++.||+|||.++.
T Consensus       127 ~~g~~l~~~l~~~~~~~gv~--i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       127 GSGAEIVQKLYKKAKKEGID--TRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             CCHHHHHHHHHHHHHHcCCE--EEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence            34678999999999999987  9999999999875 332   233333443  3678999999998653

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>KOG0404|consensus

Probab=94.01  E-value=0.38  Score=41.93  Aligned_cols=30  Identities=23%  Similarity=0.331  Sum_probs=23.6

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEE
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHS  165 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~  165 (396)
                      ..+|+|||+|..|.-.|..+++..-+-.++
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllf   37 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLF   37 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEE
Confidence            458999999999999999998864344444

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=93.91  E-value=0.11  Score=50.21  Aligned_cols=47  Identities=21%  Similarity=0.446  Sum_probs=37.7

Q ss_pred             HcCCCCceEeCcEEEEEEEe-CCeEEEEEcc---C--cEEEcCEEEEcccCCCCC
Q psy2343          61 KFDVYNHSIFNTEVINLEQY-EDIWEVELSN---G--KKKKYDFIAVCNGAQRVA  109 (396)
Q Consensus        61 ~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~---g--~~~~~d~vvvAtG~~~~p  109 (396)
                      +-+..  ++|+++|++|++. ++.|.|++.+   +  .++.+++|+|+.|.++.|
T Consensus       194 ~~~~~--~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~  246 (488)
T PF06039_consen  194 QKGFE--LHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP  246 (488)
T ss_pred             CCCcE--EEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence            33665  9999999999998 6669999854   2  358999999999997644

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK14727 putative mercuric reductase; Provisional

Probab=93.90  E-value=0.25  Score=49.24  Aligned_cols=60  Identities=13%  Similarity=0.171  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      .+++.+.+.+.+++.++.  ++++++|++++.+++.+.|.+.+++ +.+|.||+|+|.  .|+..
T Consensus       227 d~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~~~~~v~~~~g~-i~aD~VlvA~G~--~pn~~  286 (479)
T PRK14727        227 DPLLGETLTACFEKEGIE--VLNNTQASLVEHDDNGFVLTTGHGE-LRAEKLLISTGR--HANTH  286 (479)
T ss_pred             hHHHHHHHHHHHHhCCCE--EEcCcEEEEEEEeCCEEEEEEcCCe-EEeCEEEEccCC--CCCcc
Confidence            456888888888888987  8899999999877777777766654 889999999999  77654

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=93.89  E-value=0.18  Score=49.06  Aligned_cols=58  Identities=21%  Similarity=0.411  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEcc-C--cEEEcCEEEEcccCCC
Q psy2343          48 HSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSN-G--KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~~-g--~~~~~d~vvvAtG~~~  107 (396)
                      +..+.+.|.+.+... ++.  ++++++|++|+.+++.+.|++.+ +  .++++|.||.|.|.++
T Consensus       120 ~~~l~~~L~~~~~~~~~v~--i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S  181 (415)
T PRK07364        120 HQVLLEALQEFLQSCPNIT--WLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARS  181 (415)
T ss_pred             cHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCc
Confidence            456788888877765 565  88999999998887888888763 2  3589999999999976

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=93.81  E-value=0.21  Score=48.24  Aligned_cols=59  Identities=14%  Similarity=0.178  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC
Q psy2343          48 HSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV  108 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~  108 (396)
                      +..+..-|.+-++.. ++.  ++++++|++++.+++.++|++++|.++++|.||.|.|.+|.
T Consensus       109 ~~~l~~~L~~~~~~~~~i~--i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~  168 (384)
T PRK08849        109 NRLIQLGLWQQFAQYPNLT--LMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ  168 (384)
T ss_pred             cHHHHHHHHHHHHhCCCeE--EECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence            445665665555554 455  88999999999887888999999988999999999999763

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=93.80  E-value=0.32  Score=48.19  Aligned_cols=62  Identities=16%  Similarity=0.181  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC-cEEEcCEEEEcccCCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARYPN  113 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g-~~~~~d~vvvAtG~~~~p~~P~  113 (396)
                      ..++.+.+.+..++.++.  ++++++|++|+.+++...+....+ .++.||.||+|+|.  .|+...
T Consensus       210 d~e~~~~l~~~L~~~GI~--i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~--~p~~~~  272 (458)
T PRK06912        210 DEDIAHILREKLENDGVK--IFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGR--KPRVQQ  272 (458)
T ss_pred             cHHHHHHHHHHHHHCCCE--EEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCC--ccCCCC
Confidence            357888888888888987  999999999987655555543322 35889999999998  777653

>PRK08013 oxidoreductase; Provisional

Probab=93.77  E-value=0.22  Score=48.43  Aligned_cols=60  Identities=17%  Similarity=0.134  Sum_probs=51.5

Q ss_pred             CChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ..+..+.+-|.+.+... ++.  ++++++|++++.+++.+.|+..+|+++.+|.||-|.|.+|
T Consensus       108 i~r~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S  168 (400)
T PRK08013        108 IENSVIHYALWQKAQQSSDIT--LLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS  168 (400)
T ss_pred             EEhHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence            45778888888888776 566  8999999999888778888888888899999999999976

>KOG2614|consensus

Probab=93.77  E-value=0.55  Score=44.72  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=29.8

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||||.+|+-.|..+.+.+-+|.+...+.
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e   35 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRE   35 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence            579999999999999999999998888888754

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=93.77  E-value=0.29  Score=53.36  Aligned_cols=34  Identities=32%  Similarity=0.418  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++|+|||+|..|+..|..+++.+.+|+++.+.+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~  196 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQP  196 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            4689999999999999999999999999998864

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=93.77  E-value=0.47  Score=45.65  Aligned_cols=58  Identities=19%  Similarity=0.225  Sum_probs=50.4

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      ..+..+.+++...++..+.   ++++++|++|+..++.+.|++.+|.+++++.||-|+|..
T Consensus        84 i~~~~f~~~l~~~~~~~~~---~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~  141 (374)
T PF05834_consen   84 IDRADFYEFLLERAAAGGV---IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS  141 (374)
T ss_pred             EEHHHHHHHHHHHhhhCCe---EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence            5788999999999984443   788999999999877899999999899999999999973

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK07846 mycothione reductase; Reviewed

Probab=93.76  E-value=0.26  Score=48.71  Aligned_cols=60  Identities=15%  Similarity=0.121  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN  113 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~  113 (396)
                      .++.+.+.+..+ .++.  ++++++|++++.+++...|++.+++++.+|.|++|+|.  .|+...
T Consensus       207 ~~~~~~l~~l~~-~~v~--i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~--~pn~~~  266 (451)
T PRK07846        207 DDISERFTELAS-KRWD--VRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGR--VPNGDL  266 (451)
T ss_pred             HHHHHHHHHHHh-cCeE--EEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECC--ccCccc
Confidence            566677766543 4565  88999999998766667777777888999999999999  787654

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=93.70  E-value=0.23  Score=49.29  Aligned_cols=39  Identities=10%  Similarity=0.179  Sum_probs=34.8

Q ss_pred             ceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343          67 HSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        67 ~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      .|+++++|++|++.+++|.|++.+|+++.||+||+|+-.
T Consensus       240 ~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~  278 (463)
T PRK12416        240 VVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPH  278 (463)
T ss_pred             cEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCH
Confidence            499999999999988889998888877899999999864

>PRK10015 oxidoreductase; Provisional

Probab=93.64  E-value=0.27  Score=48.24  Aligned_cols=59  Identities=10%  Similarity=0.017  Sum_probs=47.4

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .+..+.++|.+.++..++.  ++++++|+.+..+++++.+...++.++.+|.||+|+|..+
T Consensus       106 ~R~~fd~~L~~~a~~~Gv~--i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s  164 (429)
T PRK10015        106 LRNRLDPWLMEQAEQAGAQ--FIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNS  164 (429)
T ss_pred             ehhHHHHHHHHHHHHcCCE--EECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcch
Confidence            5778888999999998887  8899999999877666654333445689999999999843

>PTZ00052 thioredoxin reductase; Provisional

Probab=93.64  E-value=0.29  Score=49.08  Aligned_cols=61  Identities=18%  Similarity=0.243  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN  113 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~  113 (396)
                      +++.+++++..++.++.  ++++++|.+|+..++...|...+|+++.+|.|++|+|.  .|+...
T Consensus       222 ~~~~~~l~~~l~~~GV~--i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~--~pn~~~  282 (499)
T PTZ00052        222 RQCSEKVVEYMKEQGTL--FLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGR--KPDIKG  282 (499)
T ss_pred             HHHHHHHHHHHHHcCCE--EEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCC--CCCccc
Confidence            46778888888888987  88999999998765556677777878899999999999  777653

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=93.61  E-value=0.13  Score=48.78  Aligned_cols=38  Identities=26%  Similarity=0.264  Sum_probs=28.8

Q ss_pred             eEeCcEEEEEEEeC-CeEEEEEcc---C--cEEEcCEEEEcccC
Q psy2343          68 SIFNTEVINLEQYE-DIWEVELSN---G--KKKKYDFIAVCNGA  105 (396)
Q Consensus        68 i~~~t~V~~v~~~~-~~~~V~~~~---g--~~~~~d~vvvAtG~  105 (396)
                      ++-+++|+.++..+ ++|++++.+   +  .+..+|+||+|||-
T Consensus       296 l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy  339 (341)
T PF13434_consen  296 LLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGY  339 (341)
T ss_dssp             EETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred             EeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence            66799999999986 699999875   2  35789999999995

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=93.58  E-value=0.25  Score=48.43  Aligned_cols=58  Identities=19%  Similarity=0.192  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      +++.+++.+.++..|++  ++++++|.+|+.++. . +.+.+|+++.||.||+|+|.  .|+.+
T Consensus       179 ~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~--~p~~~  236 (427)
T TIGR03385       179 EEMNQIVEEELKKHEIN--LRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGI--KPNSE  236 (427)
T ss_pred             HHHHHHHHHHHHHcCCE--EEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCc--cCCHH
Confidence            57888899999999987  889999999987543 3 45567778999999999998  66654

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06126 hypothetical protein; Provisional

Probab=93.57  E-value=0.25  Score=50.15  Aligned_cols=60  Identities=18%  Similarity=0.268  Sum_probs=47.9

Q ss_pred             CChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEcc---Cc--EEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSN---GK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~~---g~--~~~~d~vvvAtG~~~  107 (396)
                      .++..+.+.|.+.+++. ++.  |+|+++|++++.+++++++++.+   |+  ++.+|+||.|.|.++
T Consensus       123 i~q~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S  188 (545)
T PRK06126        123 IPQKYLEPILLEHAAAQPGVT--LRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARS  188 (545)
T ss_pred             CCHHHHHHHHHHHHHhCCCce--EEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcch
Confidence            35677888998888765 566  99999999999887777776643   53  578999999999976

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=93.54  E-value=0.22  Score=47.60  Aligned_cols=60  Identities=27%  Similarity=0.330  Sum_probs=44.4

Q ss_pred             CChHHHHHHHHHHHHH-cCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          46 PNHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~-~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      .+...+...|.+.+.. .|+.  ++.+++|++|+..    .|++.+|. +.+|.||+|||.++..-.|
T Consensus       142 v~p~~~~~~l~~~~~~~~Gv~--i~~~t~V~~i~~~----~v~t~~g~-i~a~~VV~A~G~~s~~l~~  202 (365)
T TIGR03364       142 VEPREAIPALAAYLAEQHGVE--FHWNTAVTSVETG----TVRTSRGD-VHADQVFVCPGADFETLFP  202 (365)
T ss_pred             ECHHHHHHHHHHHHHhcCCCE--EEeCCeEEEEecC----eEEeCCCc-EEeCEEEECCCCChhhhCc
Confidence            3456777777777655 4877  8889999999752    67777775 6799999999997544334

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR03452 mycothione_red mycothione reductase

Probab=93.52  E-value=0.31  Score=48.26  Aligned_cols=60  Identities=22%  Similarity=0.153  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN  113 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~  113 (396)
                      +++.+.+.+..+ .++.  ++++++|++++.+++...|++.+|+++.+|.|++|+|.  .|+...
T Consensus       210 ~~~~~~l~~~~~-~gI~--i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~--~pn~~~  269 (452)
T TIGR03452       210 EDISDRFTEIAK-KKWD--IRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGR--VPNGDL  269 (452)
T ss_pred             HHHHHHHHHHHh-cCCE--EEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeecc--CcCCCC
Confidence            566667766554 4665  88999999998876667777777878999999999998  777643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=93.51  E-value=0.29  Score=49.20  Aligned_cols=58  Identities=16%  Similarity=0.215  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc---Cc--EEEcCEEEEcccCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---GK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~---g~--~~~~d~vvvAtG~~~  107 (396)
                      ...+...+...+...|..  ++.+++|+++.++++.|.|++.+   |+  ++.++.||+|+|.+.
T Consensus       154 ~~rl~~~l~~~A~~~Ga~--i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa  216 (508)
T PRK12266        154 DARLVVLNARDAAERGAE--ILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV  216 (508)
T ss_pred             HHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence            455666667778888987  88999999998877789888764   43  589999999999965

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=93.50  E-value=0.2  Score=48.24  Aligned_cols=36  Identities=31%  Similarity=0.490  Sum_probs=31.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      +++|+|+|||+|..|.-+|..|++.+ ++|++..|..
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~  212 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTL  212 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCH
Confidence            57899999999999999999999975 7788888863

>PLN02568 polyamine oxidase

Probab=93.46  E-value=0.29  Score=49.49  Aligned_cols=52  Identities=12%  Similarity=0.172  Sum_probs=41.0

Q ss_pred             HHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343          53 DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        53 ~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      ..++..++... ...|+++++|++|+..++.++|++.+|+++.||+||+++=.
T Consensus       243 ~Li~~La~~L~-~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl  294 (539)
T PLN02568        243 SVIEALASVLP-PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSL  294 (539)
T ss_pred             HHHHHHHhhCC-CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence            34444555442 23599999999999988889999999888999999998865

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.43  E-value=0.28  Score=49.23  Aligned_cols=59  Identities=10%  Similarity=0.141  Sum_probs=47.6

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC----cEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG----KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g----~~~~~d~vvvAtG~~~  107 (396)
                      ....+...+...+...|..  ++.+++|+++.++++.|.|++.++    .++.++.||.|+|.++
T Consensus       153 d~~rl~~~l~~~a~~~Ga~--i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa  215 (502)
T PRK13369        153 DDARLVVLNALDAAERGAT--ILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV  215 (502)
T ss_pred             cHHHHHHHHHHHHHHCCCE--EecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence            3466666777778888987  889999999998877898887654    2489999999999865

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=93.43  E-value=0.08  Score=51.58  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++|+|||+|.+|+-+|.+|++.+.+|+++.|..
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            489999999999999999999999999999874

>PRK07233 hypothetical protein; Provisional

Probab=93.41  E-value=0.26  Score=48.26  Aligned_cols=57  Identities=11%  Similarity=0.003  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ..+.+-|.+.++..+..  |+++++|++|+.+++++.+...++.++.+|+||+|+....
T Consensus       198 ~~l~~~l~~~l~~~g~~--v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~  254 (434)
T PRK07233        198 ATLIDALAEAIEARGGE--IRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPI  254 (434)
T ss_pred             HHHHHHHHHHHHhcCce--EEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHH
Confidence            56777777777777765  9999999999988777776666777789999999999743

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=93.36  E-value=0.29  Score=47.57  Aligned_cols=58  Identities=16%  Similarity=0.139  Sum_probs=47.6

Q ss_pred             hHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          48 HSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ...+.+-|.+.+... ++.  ++++++|++++.+++.+.|++++|+++++|.||.|.|.++
T Consensus       110 ~~~l~~~L~~~~~~~~~v~--v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S  168 (405)
T PRK08850        110 NRVIQLALLEQVQKQDNVT--LLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS  168 (405)
T ss_pred             HHHHHHHHHHHHhcCCCeE--EEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence            456667777766654 455  8899999999988778889998898899999999999965

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.34  E-value=0.25  Score=40.20  Aligned_cols=36  Identities=25%  Similarity=0.446  Sum_probs=28.7

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      +++||+|+|||.+. .|.-+|..|.+.+..|++++++
T Consensus        25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~   61 (140)
T cd05212          25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWK   61 (140)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCC
Confidence            68899999999655 5666788888778888888754

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=93.34  E-value=0.36  Score=48.20  Aligned_cols=60  Identities=17%  Similarity=0.181  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      .++.+++....++.++.  ++++++|++|+.. ++...|++.+++++.+|.|++|+|.  .|+..
T Consensus       231 ~~~~~~l~~~L~~~GI~--i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~--~Pn~~  291 (486)
T TIGR01423       231 STLRKELTKQLRANGIN--IMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR--VPRTQ  291 (486)
T ss_pred             HHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC--CcCcc
Confidence            67888898989888987  9999999999875 3335666667778999999999998  77754

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PLN02268 probable polyamine oxidase

Probab=93.33  E-value=0.21  Score=49.11  Aligned_cols=38  Identities=13%  Similarity=0.055  Sum_probs=34.6

Q ss_pred             eEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343          68 SIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        68 i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      |+++++|++|++.+++|+|++.+|+++.+|+||+|+-.
T Consensus       213 i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~  250 (435)
T PLN02268        213 IRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL  250 (435)
T ss_pred             eeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence            99999999999988889999988888999999999854

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=93.20  E-value=0.38  Score=47.25  Aligned_cols=59  Identities=12%  Similarity=0.057  Sum_probs=45.2

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeEEE--EEc-cCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEV--ELS-NGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~~V--~~~-~g~~~~~d~vvvAtG~~~  107 (396)
                      ....+.+-|...+++.+++  |+++++|+++..++ +.+.+  ... ++..+.+++||+|||.+.
T Consensus       121 ~g~~l~~~L~~~a~~~Gv~--i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~  183 (432)
T TIGR02485       121 GGKALTNALYSSAERLGVE--IRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG  183 (432)
T ss_pred             CHHHHHHHHHHHHHHcCCE--EEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence            3567889999999999987  99999999998752 34443  232 334688999999999854

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=93.18  E-value=0.39  Score=47.94  Aligned_cols=60  Identities=17%  Similarity=0.107  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC---cEEEcCEEEEcccCCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g---~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      .++.+++.+..+..++.  ++++++|.+|+..++...|+..++   +++.+|.|++|+|.  .|+..
T Consensus       220 ~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~--~pn~~  282 (484)
T TIGR01438       220 QDCANKVGEHMEEHGVK--FKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR--DACTR  282 (484)
T ss_pred             HHHHHHHHHHHHHcCCE--EEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecC--CcCCC
Confidence            67888888888888987  899999999987655556665554   36899999999998  77764

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>KOG1346|consensus

Probab=93.18  E-value=0.17  Score=48.08  Aligned_cols=56  Identities=18%  Similarity=0.255  Sum_probs=39.9

Q ss_pred             cCchhhhcccCCCeEecC--CcceEeC--CeEEecCCcEecCcEEEEccCCCCC-CCCCCc
Q psy2343         233 MNSQILYHIGHGDILPKD--DIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRH-FPFIDK  288 (396)
Q Consensus       233 ~~~~~~~~i~~g~i~~~~--~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~-~~~l~~  288 (396)
                      ++++=+....+|.|.+..  .+..++.  +.|++.||++|.+|-.++|||.+|. .+.+++
T Consensus       259 vspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~  319 (659)
T KOG1346|consen  259 VSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEE  319 (659)
T ss_pred             eChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhh
Confidence            344444555566666532  5666653  5799999999999999999999985 455554

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=93.09  E-value=0.38  Score=45.33  Aligned_cols=59  Identities=25%  Similarity=0.315  Sum_probs=47.6

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc---Cc--EEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---GK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~---g~--~~~~d~vvvAtG~~~  107 (396)
                      .+.++.+.|.+.++..++.  ++++++|++++.+.++.++.+.+   |+  ++++|.||-|.|.+|
T Consensus       109 ~r~~l~~~L~~~~~~~gv~--i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S  172 (356)
T PF01494_consen  109 DRPELDRALREEAEERGVD--IRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHS  172 (356)
T ss_dssp             EHHHHHHHHHHHHHHHTEE--EEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred             hHHHHHHhhhhhhhhhhhh--heeeeecccccccccccccccccccCCceeEEEEeeeecccCccc
Confidence            5789999999999999876  99999999999887766655543   32  589999999999976

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK13748 putative mercuric reductase; Provisional

Probab=93.04  E-value=0.39  Score=48.90  Aligned_cols=60  Identities=8%  Similarity=0.120  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      ..++.+.+.+..+..++.  ++++++|.+|+.+++.+.+.++++ ++.+|.|++|+|.  .|+..
T Consensus       309 d~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~--~pn~~  368 (561)
T PRK13748        309 DPAIGEAVTAAFRAEGIE--VLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGR--APNTR  368 (561)
T ss_pred             CHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCC--CcCCC
Confidence            357888888888888987  889999999987767777776655 4899999999998  78765

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=93.01  E-value=0.13  Score=50.16  Aligned_cols=49  Identities=18%  Similarity=0.209  Sum_probs=38.6

Q ss_pred             ceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcC-C-CcEEEEeccC
Q psy2343         121 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH-S-EKVYHSTRRG  169 (396)
Q Consensus       121 ~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~-~-~~V~l~~r~~  169 (396)
                      .+.-+..|+....-+.-+|+|||+|.+|+-+|.+|++. + ++|+++.|+.
T Consensus        15 ~~~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        15 HRGWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             CCCCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            33445556666655667899999999999999999985 6 5899999863

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=92.96  E-value=0.34  Score=35.05  Aligned_cols=42  Identities=31%  Similarity=0.291  Sum_probs=36.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG   91 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g   91 (396)
                      .+++.+++.++.++.+++  ++++++|.+|+.++++++|+++||
T Consensus        39 ~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   39 DPDAAKILEEYLRKRGVE--VHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             SHHHHHHHHHHHHHTTEE--EEESEEEEEEEEETTSEEEEEETS
T ss_pred             CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCEEEEEEecC
Confidence            468899999999999998  999999999999865577888775

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>KOG0405|consensus

Probab=92.92  E-value=0.41  Score=44.53  Aligned_cols=130  Identities=21%  Similarity=0.195  Sum_probs=72.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc--------eeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHH
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY--------HYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVF  207 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~--------~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  207 (396)
                      .=..+|||+|.-|+-.|+..++.+.+|-++.-...        -++|+...             |...          .+
T Consensus        20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm-------------~~~a----------~~   76 (478)
T KOG0405|consen   20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVM-------------WYAA----------DY   76 (478)
T ss_pred             ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeE-------------Eehh----------hh
Confidence            34689999999999999999999999888875411        12222210             1000          01


Q ss_pred             HHhcCCCCCCCCCCCCCC-CCcc-----c----CccCchhhhcccCCCeEecCCcceEe-CC--eEEecCCcE--ecCcE
Q psy2343         208 KLAGFDGVDYGLKKPDHP-LDAA-----H----PIMNSQILYHIGHGDILPKDDIKNLN-GN--IVHFVDDTH--IEVDT  272 (396)
Q Consensus       208 ~~~~~~~~~~~~~~p~~~-~~~~-----~----~~~~~~~~~~i~~g~i~~~~~i~~i~-~~--~v~~~dG~~--~~~D~  272 (396)
                      .....+...||++...+. +...     +    .-++.-+...+....|++...-.++. .+  .|...||++  +.+..
T Consensus        77 ~~~~~da~~yG~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~  156 (478)
T KOG0405|consen   77 SEEMEDAKDYGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKH  156 (478)
T ss_pred             hHHhhhhhhcCCccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecce
Confidence            112234445555432211 1110     0    11233334444445555433333332 23  466678864  67999


Q ss_pred             EEEccCCCCCCCCCCc
Q psy2343         273 IIYATGYNRHFPFIDK  288 (396)
Q Consensus       273 VI~aTG~~~~~~~l~~  288 (396)
                      |++|||-+|..|-++.
T Consensus       157 iLIAtGg~p~~PnIpG  172 (478)
T KOG0405|consen  157 ILIATGGRPIIPNIPG  172 (478)
T ss_pred             EEEEeCCccCCCCCCc
Confidence            9999999999886654

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.92  E-value=0.43  Score=47.41  Aligned_cols=60  Identities=13%  Similarity=0.075  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc---c--CcEEEcCEEEEcccCCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---N--GKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~---~--g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      .++.+++++..+..+++  ++++++|++|+.+++...++..   +  ++++.+|.|++|+|.  .|+..
T Consensus       215 ~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~--~pn~~  279 (466)
T PRK06115        215 TETAKTLQKALTKQGMK--FKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGR--RPYTQ  279 (466)
T ss_pred             HHHHHHHHHHHHhcCCE--EEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCC--ccccc
Confidence            56778888888888987  9999999999876556665543   2  346899999999998  77654

>TIGR02730 carot_isom carotene isomerase

Probab=92.85  E-value=0.39  Score=48.09  Aligned_cols=56  Identities=14%  Similarity=0.034  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      ..+.+-|.+.+++.|..  |+++++|++|..+ ++.+.|.+.+|+++.+|.||+|+|..
T Consensus       229 ~~l~~~L~~~~~~~G~~--i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~  285 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQ--IRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRW  285 (493)
T ss_pred             HHHHHHHHHHHHHCCCE--EEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence            57888899999999987  9999999999876 44577888888889999999999973

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR02734 crtI_fam phytoene desaturase

Probab=92.82  E-value=0.43  Score=47.86  Aligned_cols=55  Identities=18%  Similarity=0.207  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEccCcEEEcCEEEEcccC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      ..+.+-|.+.+++.|..  |+++++|++|..++++ +.|++++|+++.+|.||+|++.
T Consensus       219 ~~l~~al~~~~~~~G~~--i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~  274 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGE--LRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADL  274 (502)
T ss_pred             HHHHHHHHHHHHHCCCE--EEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcH
Confidence            57888888888888877  9999999999877544 7888888888999999999996

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=92.77  E-value=0.39  Score=46.20  Aligned_cols=60  Identities=17%  Similarity=0.203  Sum_probs=50.8

Q ss_pred             CChHHHHHHHHHHHHHcC-CCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV  108 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~-l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~  108 (396)
                      .++.++.+.|.+.+...+ +.  ++++++|+++..+++.+.|+++++ ++++|.||.|-|.+|.
T Consensus       101 v~r~~L~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~  161 (374)
T PRK06617        101 VKNSDFKKILLSKITNNPLIT--LIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK  161 (374)
T ss_pred             EEHHHHHHHHHHHHhcCCCcE--EECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence            467899999999888875 44  788999999988878888988776 7999999999999763

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=92.74  E-value=0.33  Score=44.02  Aligned_cols=59  Identities=12%  Similarity=-0.030  Sum_probs=43.8

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC-e-EEEEEc------c-----CcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-I-WEVELS------N-----GKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~-~-~~V~~~------~-----g~~~~~d~vvvAtG~~~  107 (396)
                      ++.++...|...+.+.++.  ++++++|+++..+++ . +-|.+.      +     ..++.++.||+|||+.+
T Consensus       102 d~~~l~~~L~~~A~~~Gv~--I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a  173 (257)
T PRK04176        102 DSVEAAAKLAAAAIDAGAK--IFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA  173 (257)
T ss_pred             cHHHHHHHHHHHHHHcCCE--EEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence            5678899999999999987  999999999876533 2 222211      1     23588999999999843

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=92.58  E-value=0.15  Score=46.88  Aligned_cols=33  Identities=36%  Similarity=0.430  Sum_probs=30.7

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      +.+|||+|.||+=+|..+++.++.|-++.+|++
T Consensus         3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~H   35 (374)
T COG0562           3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNH   35 (374)
T ss_pred             cEEEECCchhHHHHHHHHHHcCCEEEEEecccc
Confidence            689999999999999999999999999999874

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=92.58  E-value=0.53  Score=47.79  Aligned_cols=59  Identities=22%  Similarity=0.406  Sum_probs=47.9

Q ss_pred             ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEc--cCc-EEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELS--NGK-KKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~--~g~-~~~~d~vvvAtG~~~  107 (396)
                      +...+.++|.+.+.++ ++.  ++++++|++++.+++.+.++..  ++. ++.+|+||.|.|.++
T Consensus       123 ~q~~le~~L~~~~~~~~~v~--v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S  185 (547)
T PRK08132        123 QQYYVEGYLVERAQALPNID--LRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARS  185 (547)
T ss_pred             CHHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCc
Confidence            5667889999988876 455  8999999999988777877664  343 589999999999966

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=92.49  E-value=0.12  Score=49.58  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=30.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||||.+|+=+|.+|++.+.+|+++.|..
T Consensus         5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~   36 (376)
T PRK11259          5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM   36 (376)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            69999999999999999999999999999864

>PLN02697 lycopene epsilon cyclase

Probab=92.41  E-value=0.49  Score=47.60  Aligned_cols=59  Identities=14%  Similarity=0.179  Sum_probs=48.3

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEE-EEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEV-ELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V-~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .++..+.+.|.+.+...++.  + ++++|+.|..+++.+.+ ++.+|.++.++.||+|+|..+
T Consensus       189 V~R~~L~~~Ll~~a~~~GV~--~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        189 VSRTLLHEELLRRCVESGVS--Y-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             EcHHHHHHHHHHHHHhcCCE--E-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            57889999999999888875  4 78899999887666654 456777899999999999965

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=92.41  E-value=0.2  Score=36.91  Aligned_cols=36  Identities=33%  Similarity=0.471  Sum_probs=31.8

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEec
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTR  167 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r  167 (396)
                      ..+.+|+++|+|.|..|.-++..+.+. ..+|+++.|
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            346789999999999999999999987 778888877

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=92.27  E-value=0.13  Score=48.56  Aligned_cols=31  Identities=26%  Similarity=0.400  Sum_probs=29.7

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .|+|||+|..|+-+|.+|++.+.+|+++.+.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence            5899999999999999999999999999997

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=92.26  E-value=0.13  Score=48.51  Aligned_cols=33  Identities=30%  Similarity=0.329  Sum_probs=29.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      +|+|||||.+|+=+|..|++.+.+|+++.|++.
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~   35 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD   35 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence            699999999999999999999999999999864

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PLN02676 polyamine oxidase

Probab=92.25  E-value=0.46  Score=47.44  Aligned_cols=40  Identities=13%  Similarity=0.123  Sum_probs=36.4

Q ss_pred             CceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343          66 NHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        66 ~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      ..|++|++|++|+..+++.+|++.+|+++.+|+||+|...
T Consensus       245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl  284 (487)
T PLN02676        245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSL  284 (487)
T ss_pred             CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccCh
Confidence            4599999999999988889999999988999999999985

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=92.22  E-value=0.14  Score=49.28  Aligned_cols=32  Identities=34%  Similarity=0.461  Sum_probs=29.6

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||||.+|+-+|.+|++.+.+|+++.+..
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~   33 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD   33 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            59999999999999999999998999999854

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=92.20  E-value=0.36  Score=46.91  Aligned_cols=53  Identities=13%  Similarity=0.055  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE-ccCcEEEcCEEEEcccCC
Q psy2343          52 LDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        52 ~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~-~~g~~~~~d~vvvAtG~~  106 (396)
                      .+-|.++++..+..  |++|++|++|+.+++++++.+ .+|+++.||+||+|+-..
T Consensus       200 ~~~l~~~l~~~g~~--i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~  253 (419)
T TIGR03467       200 PEPARRWLDSRGGE--VRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPR  253 (419)
T ss_pred             HHHHHHHHHHcCCE--EEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHH
Confidence            34466666666765  999999999999877665544 356678999999998763

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.16  E-value=0.51  Score=43.19  Aligned_cols=36  Identities=22%  Similarity=0.255  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ++.||+|+|||.| ..|.-+|..|.+.+..|++++.+
T Consensus       154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~  190 (285)
T PRK14191        154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL  190 (285)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC
Confidence            6789999999999 88999999998888889988643

>PRK07045 putative monooxygenase; Reviewed

Probab=92.13  E-value=0.57  Score=45.24  Aligned_cols=60  Identities=20%  Similarity=0.255  Sum_probs=47.8

Q ss_pred             CChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCC--eEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~--~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .++.++.+.|.+.+... ++.  ++++++|++++.+++  .+.|+.++|+++.+|.||.|.|.++
T Consensus       103 i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S  165 (388)
T PRK07045        103 IPCEQLRRLLLAKLDGLPNVR--LRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS  165 (388)
T ss_pred             ccHHHHHHHHHHHHhcCCCee--EEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence            35678888887777543 555  999999999998643  3578888888899999999999976

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.09  E-value=0.4  Score=43.89  Aligned_cols=36  Identities=19%  Similarity=0.275  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEcCCCc-HHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAGNS-GCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G~s-a~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ++.||+|+|||.|.+ |.-+|..|.+.+..|++++.+
T Consensus       155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~  191 (285)
T PRK14189        155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK  191 (285)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC
Confidence            578999999999988 999999999888889887654

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=92.08  E-value=0.16  Score=50.11  Aligned_cols=33  Identities=18%  Similarity=0.301  Sum_probs=29.4

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~  169 (396)
                      ++|+|||||.+|.-+|..|++.+  .+|+++..++
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~   35 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASD   35 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence            57999999999999999999976  7899998764

>KOG0029|consensus

Probab=92.03  E-value=0.2  Score=50.01  Aligned_cols=37  Identities=27%  Similarity=0.334  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+.++|+|||+|.+|+-+|..|.+.+-+|++..-|+
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd   48 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD   48 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence            3456789999999999999999999999999988765

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=91.95  E-value=0.59  Score=45.18  Aligned_cols=60  Identities=30%  Similarity=0.307  Sum_probs=53.1

Q ss_pred             CChHHHHHHHHHHHHHcC-CCCceEeCcEEEEEEEeCCeEEEEEc-cCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELS-NGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~-l~~~i~~~t~V~~v~~~~~~~~V~~~-~g~~~~~d~vvvAtG~~~  107 (396)
                      .++.++.+-|.+.+...+ +.  ++++++|+.++.+++..+++.+ +|+++.+|.||-|-|.+|
T Consensus       101 ~~~~~l~~~L~~~~~~~~~v~--~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S  162 (387)
T COG0654         101 VPRSDLLNALLEAARALPNVT--LRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANS  162 (387)
T ss_pred             eEhHHHHHHHHHHHhhCCCcE--EEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCch
Confidence            367899999999998875 66  8999999999998888888888 899999999999999976

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=91.82  E-value=0.33  Score=47.40  Aligned_cols=37  Identities=32%  Similarity=0.350  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+.+|+|+|+|-|.||.-+|..|.+.+..|+++..++
T Consensus         4 ~~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~   40 (448)
T COG0771           4 DFQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRP   40 (448)
T ss_pred             cccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCC
Confidence            3458999999999999999999999999999998665

>PRK05868 hypothetical protein; Validated

Probab=91.70  E-value=0.62  Score=44.76  Aligned_cols=58  Identities=14%  Similarity=0.279  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV  108 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~  108 (396)
                      +.++.+-|...+ ..+++  ++|+++|++++.+++..+|+.++|++.++|.||-|-|.+|.
T Consensus       104 R~~L~~~l~~~~-~~~v~--i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~  161 (372)
T PRK05868        104 RDDLVELLYGAT-QPSVE--YLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN  161 (372)
T ss_pred             HHHHHHHHHHhc-cCCcE--EEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence            455555554322 23444  89999999998877888899989888999999999999763

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.68  E-value=1.1  Score=41.80  Aligned_cols=25  Identities=24%  Similarity=0.308  Sum_probs=22.4

Q ss_pred             eEEecCCcEecCcEEEEccCCCCCC
Q psy2343         259 IVHFVDDTHIEVDTIIYATGYNRHF  283 (396)
Q Consensus       259 ~v~~~dG~~~~~D~VI~aTG~~~~~  283 (396)
                      .|.+.+|..+++..||++||-+...
T Consensus       303 ev~l~nGavLkaktvIlstGArWRn  327 (520)
T COG3634         303 EVELANGAVLKARTVILATGARWRN  327 (520)
T ss_pred             EEEecCCceeccceEEEecCcchhc
Confidence            5889999999999999999998653

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=91.64  E-value=0.16  Score=51.01  Aligned_cols=33  Identities=30%  Similarity=0.417  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -.|+|||||.+|+-+|.++++.+.+|.++.+..
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d   39 (508)
T PRK12266          7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD   39 (508)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            369999999999999999999999999999864

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=91.60  E-value=1.3  Score=43.20  Aligned_cols=57  Identities=12%  Similarity=0.013  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEE-EEccCc--EEEcCEEEEcccCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEV-ELSNGK--KKKYDFIAVCNGAQ  106 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V-~~~~g~--~~~~d~vvvAtG~~  106 (396)
                      +.++.+.|.+.+++.++.  ++.+++|++++..+++..+ .+.+++  .+.+|.||+|||.+
T Consensus       258 G~rL~~aL~~~l~~~Gv~--I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf  317 (422)
T PRK05329        258 GLRLQNALRRAFERLGGR--IMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF  317 (422)
T ss_pred             hHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence            457888899888888876  9999999999987654433 333443  47899999999983

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=91.59  E-value=0.62  Score=44.70  Aligned_cols=57  Identities=14%  Similarity=0.180  Sum_probs=44.0

Q ss_pred             ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCC-eEEEEEccCcEEEcCEEEEcccCC
Q psy2343          47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYED-IWEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~-~~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      .+..+.+++++.++.. +|.  | ++++|++|..+++ -+-|.+.+|..+.+|.||+|||.+
T Consensus        93 Dr~~y~~~~~~~l~~~~nl~--i-~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtf  151 (392)
T PF01134_consen   93 DRDKYSRAMREKLESHPNLT--I-IQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTF  151 (392)
T ss_dssp             -HHHHHHHHHHHHHTSTTEE--E-EES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred             cHHHHHHHHHHHHhcCCCeE--E-EEcccceEEecCCeEEEEEeCCCCEEecCEEEEecccc
Confidence            4789999999999884 443  3 5789999988744 466888899999999999999983

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=91.55  E-value=0.61  Score=45.89  Aligned_cols=60  Identities=12%  Similarity=0.193  Sum_probs=49.7

Q ss_pred             ChHHHHHHHHHHHHHcC---CCCceEeCcEEEEEEEe-------CCeEEEEEccCcEEEcCEEEEcccCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFD---VYNHSIFNTEVINLEQY-------EDIWEVELSNGKKKKYDFIAVCNGAQRV  108 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~---l~~~i~~~t~V~~v~~~-------~~~~~V~~~~g~~~~~d~vvvAtG~~~~  108 (396)
                      ++..+.+.|.+.+...+   +.  ++++++|++++..       ++..+|++.+|+++++|.||-|-|.+|.
T Consensus       115 ~~~~l~~~L~~~~~~~~~~~v~--i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~  184 (437)
T TIGR01989       115 ENDNIQNSLYNRLQEYNGDNVK--ILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN  184 (437)
T ss_pred             EHHHHHHHHHHHHHhCCCCCeE--EecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence            57788898988888764   55  8999999999752       4568888888989999999999999763

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07233 hypothetical protein; Provisional

Probab=91.55  E-value=0.17  Score=49.47  Aligned_cols=32  Identities=19%  Similarity=0.283  Sum_probs=29.9

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||+|.+|.-.|..|++.+.+|+++.+++
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~   32 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADD   32 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC
Confidence            59999999999999999999999999998875

>PRK07236 hypothetical protein; Provisional

Probab=91.54  E-value=0.58  Score=45.18  Aligned_cols=59  Identities=15%  Similarity=0.340  Sum_probs=44.9

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVA  109 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p  109 (396)
                      +...+.+.|.+   .+. ...++++++|++++.+++.++|+.++|+++.+|.||.|-|.++.-
T Consensus        98 ~~~~l~~~L~~---~~~-~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~v  156 (386)
T PRK07236         98 SWNVLYRALRA---AFP-AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTV  156 (386)
T ss_pred             CHHHHHHHHHH---hCC-CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchH
Confidence            44555555543   332 124899999999998888899999999889999999999997643

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=91.52  E-value=0.74  Score=45.55  Aligned_cols=57  Identities=26%  Similarity=0.357  Sum_probs=44.1

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE--EEEEccCcEEEcCEEEEcccCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW--EVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~--~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      .+..+-++|.+.|.+.|+.  ++-+ +|++|..+++++  .|++++|+++++|.||-|||..
T Consensus       152 DR~~fd~~L~~~A~~~Gv~--~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~  210 (454)
T PF04820_consen  152 DRAKFDQFLRRHAEERGVE--VIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRR  210 (454)
T ss_dssp             EHHHHHHHHHHHHHHTT-E--EEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG
T ss_pred             eHHHHHHHHHHHHhcCCCE--EEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCcc
Confidence            5799999999999999987  5444 688888875554  5777889899999999999983

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=91.45  E-value=0.15  Score=42.41  Aligned_cols=32  Identities=28%  Similarity=0.382  Sum_probs=30.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|+|+|+-|.=+|..|+..+.+|++..|++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999999875

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=91.36  E-value=0.18  Score=48.89  Aligned_cols=32  Identities=13%  Similarity=0.323  Sum_probs=29.8

Q ss_pred             eEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~  169 (396)
                      +|+|||||.+|+=+|.+|++.  +.+|+++.|.+
T Consensus         4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~   37 (393)
T PRK11728          4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES   37 (393)
T ss_pred             cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            699999999999999999998  88999999864

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=91.34  E-value=0.52  Score=43.94  Aligned_cols=33  Identities=21%  Similarity=0.132  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|..|.=+|..|++.+.+|+++.|+.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            379999999999999999999988999999964

>PRK08401 L-aspartate oxidase; Provisional

Probab=91.33  E-value=0.83  Score=45.38  Aligned_cols=58  Identities=19%  Similarity=0.137  Sum_probs=43.5

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEccCcEEEcCEEEEcccCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQRV  108 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~~g~~~~~d~vvvAtG~~~~  108 (396)
                      ++..+.+.|...+++.++.  +.++ +|+.+..+++.+. |.+ ++..+.+++||+|||.++.
T Consensus       118 ~G~~i~~~L~~~~~~~gv~--i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~  176 (466)
T PRK08401        118 TGKHIIKILYKHARELGVN--FIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG  176 (466)
T ss_pred             chHHHHHHHHHHHHhcCCE--EEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence            4678999999999988886  6554 7888766555554 333 5566899999999999653

>PLN02612 phytoene desaturase

Probab=91.31  E-value=0.73  Score=47.00  Aligned_cols=55  Identities=13%  Similarity=0.047  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe--EEEEEccCcEEEcCEEEEcccC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI--WEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~--~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      +.+.+-|.+..+..|.+  |+++++|++|+.++++  +.|.+.+|+++.+|+||+|+..
T Consensus       308 ~~l~~~l~~~l~~~G~~--I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~  364 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGE--VRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHHHHHHhcCCE--EEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence            34556666666666765  9999999999986444  3466677888999999999876

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=91.30  E-value=0.2  Score=45.94  Aligned_cols=32  Identities=28%  Similarity=0.434  Sum_probs=30.0

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||+|.+|+=+|..|++.+.+|+++.+++
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~   33 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS   33 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            59999999999999999999999999999885

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK06996 hypothetical protein; Provisional

Probab=91.27  E-value=0.65  Score=45.03  Aligned_cols=58  Identities=12%  Similarity=0.033  Sum_probs=49.7

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC---cEEEcCEEEEcccC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNGA  105 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g---~~~~~d~vvvAtG~  105 (396)
                      .++.++.+.|.+.+...++.  ++++++|++++.+.+.++|+..++   +++++|.||.|.|.
T Consensus       112 v~r~~l~~~L~~~~~~~g~~--~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~  172 (398)
T PRK06996        112 VRYGSLVAALARAVRGTPVR--WLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG  172 (398)
T ss_pred             EEhHHHHHHHHHHHHhCCCE--EEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence            45788999999999888865  889999999988888899988754   57999999999995

>PRK07538 hypothetical protein; Provisional

Probab=91.21  E-value=1.6  Score=42.63  Aligned_cols=62  Identities=15%  Similarity=0.136  Sum_probs=46.2

Q ss_pred             CChHHHHHHHHHHHHH-cCCCCceEeCcEEEEEEEeCCeEEEEEccC-----cEEEcCEEEEcccCCCC
Q psy2343          46 PNHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDIWEVELSNG-----KKKKYDFIAVCNGAQRV  108 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~-~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g-----~~~~~d~vvvAtG~~~~  108 (396)
                      .++.++.+.|.+.+.. .+. ..|+++++|++++.+++...+.+.++     +++.+|.||-|.|.++.
T Consensus        99 i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~  166 (413)
T PRK07538         99 IHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSA  166 (413)
T ss_pred             EEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHH
Confidence            4678888888777654 452 24899999999988765555555432     36899999999999763

>KOG1335|consensus

Probab=91.21  E-value=1.7  Score=41.09  Aligned_cols=60  Identities=17%  Similarity=0.174  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEcc---C--cEEEcCEEEEcccCCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSN---G--KKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~---g--~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      .|+..-+++..+.-++.  .+++|+|..+++. ++...|++.+   +  +++++|.++||+|.  +|..-
T Consensus       252 ~Eisk~~qr~L~kQgik--F~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGR--rP~t~  317 (506)
T KOG1335|consen  252 GEISKAFQRVLQKQGIK--FKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGR--RPFTE  317 (506)
T ss_pred             HHHHHHHHHHHHhcCce--eEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccC--ccccc
Confidence            58888889999988887  8899999999998 4467777654   2  35899999999998  77654

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=91.21  E-value=0.6  Score=45.65  Aligned_cols=56  Identities=14%  Similarity=0.080  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      ..-+...++..++.....  |+++++|+.|.++...+.+...+|..++||.||++.=.
T Consensus       211 ~gG~~~l~~al~~~l~~~--i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~  266 (444)
T COG1232         211 RGGLQSLIEALAEKLEAK--IRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPL  266 (444)
T ss_pred             CccHHHHHHHHHHHhhhc--eeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCH
Confidence            445777777888877766  99999999999986667777778888999999998765

>PRK08163 salicylate hydroxylase; Provisional

Probab=91.20  E-value=0.25  Score=47.84  Aligned_cols=35  Identities=26%  Similarity=0.274  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      ..+|+|||+|.+|+=+|..|++.+-+|+++.|++.
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            46899999999999999999999999999999863

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=91.17  E-value=0.88  Score=45.16  Aligned_cols=58  Identities=14%  Similarity=0.228  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEc--cC--cEEEcCEEEEcccCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELS--NG--KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~--~g--~~~~~d~vvvAtG~~~  107 (396)
                      +..+...|...+++.++.  ++++++|+++..++++.. |...  ++  ..+.++.||+|||.+.
T Consensus       130 g~~l~~~l~~~~~~~gv~--i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~  192 (466)
T PRK08274        130 GKALVNALYRSAERLGVE--IRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFE  192 (466)
T ss_pred             HHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence            467888898999999987  999999999987655433 4332  23  2478999999999854

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=91.09  E-value=0.35  Score=45.02  Aligned_cols=54  Identities=15%  Similarity=0.240  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343          51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      -..|++..+..++  ..|..++-|.+|++..++..|+..+|++..||+||+||=..
T Consensus       219 S~~yvq~laa~~~--~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~d  272 (447)
T COG2907         219 SRAYVQRLAADIR--GRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPD  272 (447)
T ss_pred             hHHHHHHHhcccc--ceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChH
Confidence            3567777777765  34899999999999855555666678888999999999773

>KOG1800|consensus

Probab=91.08  E-value=0.67  Score=43.70  Aligned_cols=34  Identities=24%  Similarity=0.247  Sum_probs=29.5

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~  169 (396)
                      -.+|.|||+|..|+=.|..|++.  ..+|+++.+.|
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~P   55 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLP   55 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCC
Confidence            34899999999999999999884  46899999876

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=91.06  E-value=0.21  Score=50.67  Aligned_cols=32  Identities=25%  Similarity=0.476  Sum_probs=30.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||||.+|+-+|.+|++.+.+|+++.+..
T Consensus         8 DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d   39 (546)
T PRK11101          8 DVIIIGGGATGAGIARDCALRGLRCILVERHD   39 (546)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            69999999999999999999999999999864

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=90.90  E-value=0.23  Score=48.46  Aligned_cols=32  Identities=28%  Similarity=0.333  Sum_probs=29.9

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||||..|+=+|.+|++.+.+|+++.+..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP   33 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            69999999999999999999999999999863

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=90.89  E-value=0.18  Score=43.96  Aligned_cols=35  Identities=29%  Similarity=0.234  Sum_probs=28.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ....|+|||+|.+|.-+|..|++.+.+|.++.++.
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~   50 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKL   50 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSS
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCC
Confidence            34579999999999999999999999999999874

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=90.89  E-value=0.63  Score=38.76  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=28.2

Q ss_pred             CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      +++||+|+|||.+ ..|.-++..|.+....|++++..
T Consensus        33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~   69 (160)
T PF02882_consen   33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK   69 (160)
T ss_dssp             STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT
T ss_pred             CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC
Confidence            5889999999977 58999999999998899998765

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.89  E-value=0.23  Score=49.86  Aligned_cols=32  Identities=31%  Similarity=0.476  Sum_probs=30.3

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||||.+|+-+|.+|++.+.+|.++.+..
T Consensus         8 DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d   39 (502)
T PRK13369          8 DLFVIGGGINGAGIARDAAGRGLKVLLCEKDD   39 (502)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            69999999999999999999999999999874

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=90.73  E-value=1.6  Score=44.72  Aligned_cols=38  Identities=18%  Similarity=0.263  Sum_probs=28.2

Q ss_pred             CeEe--cCCcceEeC--CeEEecCCcEecCcEEEEccCCCCC
Q psy2343         245 DILP--KDDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRH  282 (396)
Q Consensus       245 ~i~~--~~~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~  282 (396)
                      +|++  ..++..++.  ..|+.++|..+..|-+|+|||..|-
T Consensus        73 ~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pf  114 (793)
T COG1251          73 GITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPF  114 (793)
T ss_pred             CcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCcccc
Confidence            4554  346777764  4577778889999999999998654

>PRK06475 salicylate hydroxylase; Provisional

Probab=90.71  E-value=0.26  Score=47.83  Aligned_cols=34  Identities=21%  Similarity=0.213  Sum_probs=31.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      ++|+|||||.+|+=+|..|++.+-+|+++.|.+.
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            6899999999999999999999999999998763

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=90.68  E-value=1  Score=45.39  Aligned_cols=60  Identities=12%  Similarity=0.029  Sum_probs=45.6

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE-EEEEc---cCc--EEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELS---NGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~-~V~~~---~g~--~~~~d~vvvAtG~~~  107 (396)
                      .....+..-+...+..+|..  |.++++|++|.++++++ .|++.   +|+  ++.++.||+|+|.+.
T Consensus       125 vdp~~l~~al~~~A~~~Ga~--i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa  190 (516)
T TIGR03377       125 VDPFRLVAANVLDAQEHGAR--IFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA  190 (516)
T ss_pred             ECHHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence            34566777777788889987  99999999999876653 35543   242  589999999999864

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=90.61  E-value=0.24  Score=47.31  Aligned_cols=32  Identities=28%  Similarity=0.314  Sum_probs=29.6

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||+|.+|+-+|.+|++.+.+|+++.+..
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~   33 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS   33 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            59999999999999999999999999999864

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PLN02576 protoporphyrinogen oxidase

Probab=90.60  E-value=0.83  Score=45.73  Aligned_cols=52  Identities=15%  Similarity=0.247  Sum_probs=37.4

Q ss_pred             HHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEc--cCc-EEEcCEEEEcccC
Q psy2343          53 DYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELS--NGK-KKKYDFIAVCNGA  105 (396)
Q Consensus        53 ~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~--~g~-~~~~d~vvvAtG~  105 (396)
                      ...+..++..+- ..|++|++|++|++.+++ |.|++.  +|+ ++.||+||+|+=.
T Consensus       240 ~L~~~la~~l~~-~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~  295 (496)
T PLN02576        240 TLPDALAKRLGK-DKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPL  295 (496)
T ss_pred             HHHHHHHHhhCc-CcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCH
Confidence            334444555431 359999999999998665 988765  343 5899999999865

>PRK06475 salicylate hydroxylase; Provisional

Probab=90.54  E-value=0.99  Score=43.79  Aligned_cols=60  Identities=8%  Similarity=0.140  Sum_probs=48.0

Q ss_pred             ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEc---cCcEEEcCEEEEcccCCCC
Q psy2343          47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELS---NGKKKKYDFIAVCNGAQRV  108 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~---~g~~~~~d~vvvAtG~~~~  108 (396)
                      ++..+.+-|.+.+... ++.  ++++++|++++.+++.++|+..   +++++++|.||-|-|.+|.
T Consensus       105 ~r~~l~~~L~~~~~~~~~i~--v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~  168 (400)
T PRK06475        105 HRADLQSALLDACRNNPGIE--IKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSM  168 (400)
T ss_pred             CHHHHHHHHHHHHHhcCCcE--EEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence            6778888888877654 555  8999999999987777888763   3456899999999999773

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=90.45  E-value=0.26  Score=47.99  Aligned_cols=34  Identities=18%  Similarity=0.197  Sum_probs=31.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+|+|||+|..|+=+|..|++.+.+|+++.|++.
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   52 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA   52 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            4799999999999999999999999999999864

>PRK04148 hypothetical protein; Provisional

Probab=90.40  E-value=0.38  Score=38.70  Aligned_cols=34  Identities=18%  Similarity=0.187  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++++|++||.| +|.++|..|++.+.+|+.+..++
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~   49 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINE   49 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence            56899999999 99999999999999999998775

>TIGR00292 thiazole biosynthesis enzyme

Probab=90.40  E-value=1.1  Score=40.51  Aligned_cols=57  Identities=16%  Similarity=0.138  Sum_probs=43.3

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE---EEEc-----------cCcEEEcCEEEEcccC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE---VELS-----------NGKKKKYDFIAVCNGA  105 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~---V~~~-----------~g~~~~~d~vvvAtG~  105 (396)
                      .+.++.+.|...+.+.+++  ++++++|+++..+++.++   |.+.           +..++.++.||.|||+
T Consensus        98 ~~~el~~~L~~~a~e~GV~--I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~  168 (254)
T TIGR00292        98 DSAEFISTLASKALQAGAK--IFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH  168 (254)
T ss_pred             eHHHHHHHHHHHHHHcCCE--EECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence            5678999999999999987  899999999887644222   2221           1235789999999998

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=90.35  E-value=0.79  Score=40.40  Aligned_cols=43  Identities=30%  Similarity=0.457  Sum_probs=34.4

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccCceeec
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRGYHYYP  174 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~~~~~p  174 (396)
                      ..++|++|+|.|.|+.|.-+|..|.+. ++.|.++..++....|
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~   62 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP   62 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC
Confidence            356899999999999999999999998 5566777766654433

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=90.24  E-value=0.3  Score=47.01  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+|+|||+|.+|+=+|.+|++.+.+|+++.+..
T Consensus         4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~   37 (387)
T COG0665           4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE   37 (387)
T ss_pred             cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence            4689999999999999999999988999999765

>PRK07208 hypothetical protein; Provisional

Probab=90.22  E-value=0.31  Score=48.59  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus         4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~   37 (479)
T PRK07208          4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP   37 (479)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            4689999999999999999999888999998764

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=90.21  E-value=0.29  Score=47.32  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||||.+|+=+|..|++.+.+|+++.|.+
T Consensus         7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~   39 (392)
T PRK08773          7 RDAVIVGGGVVGAACALALADAGLSVALVEGRE   39 (392)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            479999999999999999999999999999975

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=90.19  E-value=1.3  Score=43.04  Aligned_cols=59  Identities=19%  Similarity=0.052  Sum_probs=44.9

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCe-EEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDI-WEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~-~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .....+..-|...+...|+.  +..+++|++|+.. ++. +.|++++| ++.++.||||+|.++
T Consensus       180 v~p~~l~~~l~~~a~~~Gv~--~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~  240 (407)
T TIGR01373       180 ARHDAVAWGYARGADRRGVD--IIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS  240 (407)
T ss_pred             CCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence            34456666677788888887  8889999999764 344 45777777 489999999999864

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=90.18  E-value=0.28  Score=50.63  Aligned_cols=33  Identities=36%  Similarity=0.522  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -.|+|||||.+|+-+|.+|++.+.+|.++.+..
T Consensus        72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d  104 (627)
T PLN02464         72 LDVLVVGGGATGAGVALDAATRGLRVGLVERED  104 (627)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence            369999999999999999999999999999864

>PRK09126 hypothetical protein; Provisional

Probab=90.18  E-value=0.29  Score=47.31  Aligned_cols=34  Identities=29%  Similarity=0.356  Sum_probs=31.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      -+|+|||||.+|+=+|..|++.+.+|+++.|.+.
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            3699999999999999999999999999999864

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=90.13  E-value=1.3  Score=44.42  Aligned_cols=58  Identities=12%  Similarity=0.170  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe---EEEEEccCc--EEEcCEEEEcccCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI---WEVELSNGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~---~~V~~~~g~--~~~~d~vvvAtG~~~  107 (396)
                      +..+.+-|...++..++.  ++++++|+++..++++   +.+...+++  ++.+|.||+|||.+.
T Consensus       189 g~~l~~~L~~~~~~~gv~--i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~  251 (506)
T PRK06481        189 GGYLVDGLLKNVQERKIP--LFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFG  251 (506)
T ss_pred             hHHHHHHHHHHHHHcCCe--EEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence            456778888888888887  9999999999875553   344444433  478999999999864

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=90.11  E-value=0.47  Score=40.37  Aligned_cols=39  Identities=23%  Similarity=0.293  Sum_probs=34.0

Q ss_pred             CCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         131 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       131 ~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ...+.||+|.|||.|.+|..+|..+...+-+|+.+.|..
T Consensus        31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~   69 (178)
T PF02826_consen   31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSP   69 (178)
T ss_dssp             BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSC
T ss_pred             ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccC
Confidence            346789999999999999999999999999999999876

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PLN02268 probable polyamine oxidase

Probab=90.10  E-value=0.3  Score=47.96  Aligned_cols=33  Identities=30%  Similarity=0.306  Sum_probs=29.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++|+|||+|.||.-+|..|.+.+.+|+++..++
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~   33 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRD   33 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999888899988654

>TIGR02028 ChlP geranylgeranyl reductase

Probab=90.06  E-value=0.31  Score=47.32  Aligned_cols=32  Identities=28%  Similarity=0.416  Sum_probs=30.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||+|..|+-+|..|++.+.+|.++.|+.
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~   33 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP   33 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence            69999999999999999999999999999875

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.02  E-value=0.31  Score=48.32  Aligned_cols=36  Identities=31%  Similarity=0.335  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +.+|+|+|+|.|.+|+-+|..|.+.+.+|+++.+++
T Consensus        12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            457899999999999999999999999999998764

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=90.00  E-value=0.32  Score=48.19  Aligned_cols=33  Identities=21%  Similarity=0.242  Sum_probs=29.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcC----CCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHH----SEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~----~~~V~l~~r~~  169 (396)
                      ++|+|||||.+|+-.|..|++.    +.+|+++.+++
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~   39 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASD   39 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCC
Confidence            5899999999999999999997    78899998765

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=89.88  E-value=1.5  Score=44.87  Aligned_cols=59  Identities=12%  Similarity=0.069  Sum_probs=44.0

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEE--ccCc-EEEc-CEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VEL--SNGK-KKKY-DFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~--~~g~-~~~~-d~vvvAtG~~~  107 (396)
                      .+..+.+-|...+++.++.  |+++++|+++..++++.. |..  .++. .+.+ +.||+|||.+.
T Consensus       215 ~g~~l~~~L~~~a~~~Gv~--i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~  278 (581)
T PRK06134        215 NGNALVARLLKSAEDLGVR--IWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP  278 (581)
T ss_pred             CHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence            3566778888899999987  999999999887655432 333  2333 3678 99999999965

>PRK07045 putative monooxygenase; Reviewed

Probab=89.87  E-value=0.33  Score=46.86  Aligned_cols=33  Identities=24%  Similarity=0.276  Sum_probs=31.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      +|+|||||.+|+=+|..|++.+-+|+++.|.+.
T Consensus         7 ~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~   39 (388)
T PRK07045          7 DVLINGSGIAGVALAHLLGARGHSVTVVERAAR   39 (388)
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence            799999999999999999999999999999874

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=89.87  E-value=0.3  Score=46.89  Aligned_cols=33  Identities=18%  Similarity=0.271  Sum_probs=30.7

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      +|+|||+|.+|.=+|..|++.+.+|+++.|++.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~   33 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPA   33 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence            489999999999999999999999999999864

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=89.86  E-value=0.32  Score=46.72  Aligned_cols=32  Identities=28%  Similarity=0.383  Sum_probs=29.0

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||+|.+|+-+|..|++.+.+|.++.+++
T Consensus         3 DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~   34 (377)
T TIGR00031         3 DYIIVGAGLSGIVLANILAQLNKRVLVVEKRN   34 (377)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            59999999999999999998888999998753

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=89.83  E-value=1.1  Score=45.61  Aligned_cols=59  Identities=15%  Similarity=0.055  Sum_probs=43.9

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE-EEEEc---cC--cEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELS---NG--KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~-~V~~~---~g--~~~~~d~vvvAtG~~~  107 (396)
                      ....+...+...+...|..  ++++++|+.+.++++++ .|++.   ++  .++.+|.||+|+|.++
T Consensus       147 dp~rl~~al~~~A~~~Ga~--i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa  211 (546)
T PRK11101        147 DPFRLTAANMLDAKEHGAQ--ILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG  211 (546)
T ss_pred             CHHHHHHHHHHHHHhCCCE--EEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence            4456666677778888987  89999999998875543 35542   23  3589999999999864

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=89.82  E-value=0.29  Score=50.95  Aligned_cols=33  Identities=15%  Similarity=0.281  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||||.+|+-+|..|++.+.+|+++.+..
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            489999999999999999999999999999863

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=89.82  E-value=0.68  Score=43.19  Aligned_cols=32  Identities=22%  Similarity=0.376  Sum_probs=29.5

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|+|+|..|.=++..|++.+..|+++.|.+
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~   33 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR   33 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence            79999999999999999999988889988875

>TIGR00551 nadB L-aspartate oxidase

Probab=89.73  E-value=1.2  Score=44.51  Aligned_cols=60  Identities=13%  Similarity=0.028  Sum_probs=44.8

Q ss_pred             ChHHHHHHHHHHHHH-cCCCCceEeCcEEEEEEEeCCeEE-EEEcc-C--cEEEcCEEEEcccCCCC
Q psy2343          47 NHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDIWE-VELSN-G--KKKKYDFIAVCNGAQRV  108 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~-~~l~~~i~~~t~V~~v~~~~~~~~-V~~~~-g--~~~~~d~vvvAtG~~~~  108 (396)
                      ++.++.+.|.+.+++ .++.  ++++++|+++..+++... |...+ +  ..+.+++||+|||.++.
T Consensus       126 ~G~~l~~~L~~~~~~~~gi~--i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       126 TGREVITTLVKKALNHPNIR--IIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK  190 (488)
T ss_pred             CHHHHHHHHHHHHHhcCCcE--EEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence            467888999998887 5776  899999999887655433 33332 2  24789999999999763

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.72  E-value=0.39  Score=47.42  Aligned_cols=36  Identities=36%  Similarity=0.475  Sum_probs=33.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +++|+|+|+|+|.+|..+|..|++.+.+|+++.+..
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            578999999999999999999999999999998864

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=89.68  E-value=0.49  Score=41.17  Aligned_cols=38  Identities=24%  Similarity=0.326  Sum_probs=33.7

Q ss_pred             CCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         131 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       131 ~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ...++||+|+|+|.|+.|.-+|..|.+.+.+|+++.++
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            44678999999999999999999999999899987665

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK06184 hypothetical protein; Provisional

Probab=89.54  E-value=0.41  Score=48.05  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=31.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      -+|+|||+|.+|+=+|..|++.+-+|+++.|++.
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~   37 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE   37 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            4799999999999999999999999999999763

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=89.51  E-value=0.94  Score=44.77  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -+|+|||||..|+=+|..|++.+.+|.++.++.
T Consensus        40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            479999999999999999999999999999875

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=89.42  E-value=0.41  Score=44.16  Aligned_cols=37  Identities=30%  Similarity=0.472  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++.||+|+|+|.|..|.-+|..|...+.+|+++.|++
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5679999999999999999999999888999998864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=89.37  E-value=0.35  Score=46.64  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=31.1

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+|+|||+|.+|+-+|..|++.+.+|+++.+.+.
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~   41 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP   41 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            3699999999999999999999999999999763

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=89.36  E-value=0.35  Score=46.51  Aligned_cols=33  Identities=24%  Similarity=0.295  Sum_probs=30.5

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~  170 (396)
                      .|+|||+|.+|+=+|..|++.+ -+|+++.|.+.
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   34 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP   34 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            4899999999999999999999 99999999763

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=89.33  E-value=0.42  Score=46.88  Aligned_cols=33  Identities=27%  Similarity=0.304  Sum_probs=31.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +||+|+|+|..|.-+|.+|++.+-+|++..+++
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~   33 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARD   33 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccC
Confidence            689999999999999999999999999999886

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=89.32  E-value=0.35  Score=46.57  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=30.7

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      +|+|||||.+|+=+|..|++.+.+|+++.|++.
T Consensus         7 dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (388)
T PRK07608          7 DVVVVGGGLVGASLALALAQSGLRVALLAPRAP   39 (388)
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            699999999999999999999999999998764

>KOG2960|consensus

Probab=89.29  E-value=2.4  Score=36.74  Aligned_cols=87  Identities=14%  Similarity=0.161  Sum_probs=52.3

Q ss_pred             EecCCcEecCcEEEEccCCCCCCCCCCc------cccc-c------cCCcc--ccccccccCCCCcEEEEeccc------
Q psy2343         261 HFVDDTHIEVDTIIYATGYNRHFPFIDK------EKLE-W------KLGIP--DLFIHIAPRNLDNIFFFGFVN------  319 (396)
Q Consensus       261 ~~~dG~~~~~D~VI~aTG~~~~~~~l~~------~~~~-~------~~~~~--~l~~~~~~~~~p~l~~iG~~~------  319 (396)
                      .+-|...+++..|+-+||-...|.-+--      +... .      +=+.-  .+..+. ...+|++++.|.-.      
T Consensus       214 sCMDPNviea~~vvS~tGHDGPFGAfcvKRl~si~~~~~l~gMk~LDMN~AEd~iV~~t-revvpgMiv~GMEvaE~DGa  292 (328)
T KOG2960|consen  214 SCMDPNVIEAAVVVSTTGHDGPFGAFCVKRLVSIDQNQKLGGMKGLDMNHAEDDIVIHT-REVVPGMIVAGMEVAELDGA  292 (328)
T ss_pred             ccCCCCeeeEEEEEEccCCCCCchhHHHHHHhhhhhhhhcCCCccccccchhhhhhhhh-hhccCceEEeeeeeeeccCC
Confidence            3456678899999999998876542110      0000 0      00000  111222 23479999998532      


Q ss_pred             -CcCchhhHHHHHHHHHHHHHhccccCCCc
Q psy2343         320 -AAAGLGDGLRLQGQFIRSYIQAFIRKSKG  348 (396)
Q Consensus       320 -~~~~~~~~ae~qa~~~a~~l~~~~~lp~~  348 (396)
                       ..++.|......+..+|+.....+.+|..
T Consensus       293 nRMGPTFGaMm~SG~kAaq~aLk~f~~~~a  322 (328)
T KOG2960|consen  293 NRMGPTFGAMMLSGVKAAQQALKHFAAPNA  322 (328)
T ss_pred             cccCcchhhhhhcchhHHHHHHHHhcCccc
Confidence             23667777788888888888888777763

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=89.28  E-value=1.3  Score=45.06  Aligned_cols=59  Identities=19%  Similarity=0.066  Sum_probs=44.3

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EE-EE---EccCc--EEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WE-VE---LSNGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~-V~---~~~g~--~~~~d~vvvAtG~~~  107 (396)
                      ++.++...|...+.+.++.  |.++++|+++..++++ .. |.   ..+++  .+.+++||+|||.+.
T Consensus       132 ~G~~i~~~L~~~~~~~gv~--i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~  197 (543)
T PRK06263        132 TGHEMMMGLMEYLIKERIK--ILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG  197 (543)
T ss_pred             CHHHHHHHHHHHHhcCCCE--EEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence            4678888999988888887  9999999998766443 21 22   13454  478999999999965

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=89.25  E-value=0.42  Score=47.62  Aligned_cols=34  Identities=32%  Similarity=0.415  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .-.|+|||||.+|+-+|.+++..+-+|.|+.+..
T Consensus        12 ~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D   45 (532)
T COG0578          12 EFDVIVIGGGITGAGIARDAAGRGLKVALVEKGD   45 (532)
T ss_pred             CCCEEEECCchhhHHHHHHHHhCCCeEEEEecCc
Confidence            4579999999999999999999999999999875

>PRK08275 putative oxidoreductase; Provisional

Probab=89.17  E-value=1.8  Score=44.01  Aligned_cols=60  Identities=13%  Similarity=0.080  Sum_probs=45.5

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEE-E---EEccCc--EEEcCEEEEcccCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWE-V---ELSNGK--KKKYDFIAVCNGAQRV  108 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~-V---~~~~g~--~~~~d~vvvAtG~~~~  108 (396)
                      ++..+.+.|...+++.+++  |.+++.|+++..+ ++... |   ...+|+  .+.+++||+|||.++.
T Consensus       135 ~G~~i~~~L~~~~~~~gv~--i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~  201 (554)
T PRK08275        135 EGHDIKKVLYRQLKRARVL--ITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR  201 (554)
T ss_pred             ChHHHHHHHHHHHHHCCCE--EEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence            5778999999999988887  9999999998765 44332 2   223454  3789999999999653

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=89.16  E-value=1.1  Score=45.70  Aligned_cols=60  Identities=12%  Similarity=0.108  Sum_probs=45.5

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE----EEEEccCc--EEEcCEEEEcccCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW----EVELSNGK--KKKYDFIAVCNGAQRV  108 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~----~V~~~~g~--~~~~d~vvvAtG~~~~  108 (396)
                      ++..+...|.+.+.+.++.  +.+++.|+++..+++..    .+...+++  .+.+++||+|||.++.
T Consensus       133 tG~~i~~~L~~~~~~~gi~--i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~  198 (575)
T PRK05945        133 TGHAILHELVNNLRRYGVT--IYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR  198 (575)
T ss_pred             ChHHHHHHHHHHHhhCCCE--EEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence            5678999999988888887  88999999987655432    22334554  4789999999999753

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.11  E-value=1.1  Score=41.03  Aligned_cols=36  Identities=22%  Similarity=0.236  Sum_probs=31.7

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ++.||+|+|||.|. .|.=+|..|......|++++.+
T Consensus       161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~  197 (287)
T PRK14176        161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF  197 (287)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc
Confidence            57899999999888 8999999999888889988754

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.08  E-value=1.1  Score=41.04  Aligned_cols=36  Identities=25%  Similarity=0.179  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      +++||+|+|||.+ ..|.=+|..|.+....|++++..
T Consensus       154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~  190 (281)
T PRK14183        154 DVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF  190 (281)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC
Confidence            6789999999988 78899999998887888877643

>PRK08244 hypothetical protein; Provisional

Probab=89.06  E-value=0.37  Score=48.25  Aligned_cols=34  Identities=21%  Similarity=0.244  Sum_probs=31.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+|+|||+|.+|+=+|..|++.+.+|+++.|.+.
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~   36 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKE   36 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            3699999999999999999999999999999863

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=88.97  E-value=0.41  Score=46.26  Aligned_cols=31  Identities=26%  Similarity=0.304  Sum_probs=29.5

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      +|+|||+|.+|+=+|..|++.+.+|.++.++
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            5999999999999999999999999999987

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.96  E-value=0.25  Score=48.98  Aligned_cols=32  Identities=28%  Similarity=0.229  Sum_probs=29.4

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||.|.+|+-+|..|.+.+.+|+++.++.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~   33 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND   33 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            69999999999999999999999999998764

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=88.93  E-value=0.47  Score=44.58  Aligned_cols=37  Identities=11%  Similarity=0.252  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      .+.+|+|+|||+|..|--+|..|...+ ++|++..|+.
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~  208 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ  208 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            468999999999999999999999875 7799998874

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=88.91  E-value=0.35  Score=41.30  Aligned_cols=32  Identities=31%  Similarity=0.326  Sum_probs=28.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|.|||+|..|..+|..++..+.+|+++.+++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            58999999999999999999999999999865

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK08013 oxidoreductase; Provisional

Probab=88.83  E-value=0.39  Score=46.61  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=31.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+|+|||+|.+|.=+|..|++.+-+|+++.+++.
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            4799999999999999999999999999999874

>PRK06185 hypothetical protein; Provisional

Probab=88.80  E-value=0.42  Score=46.45  Aligned_cols=34  Identities=15%  Similarity=0.225  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+|+|||||.+|+=+|..|++.+.+|+++.+.+
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~   39 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA   39 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            3579999999999999999999999999999875

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=88.80  E-value=0.43  Score=47.72  Aligned_cols=33  Identities=24%  Similarity=0.303  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++|+|||+|..|.-+|..|++.+.+|+++.++.
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~   34 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHA   34 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            689999999999999999999999999999874

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=88.73  E-value=0.47  Score=45.92  Aligned_cols=34  Identities=21%  Similarity=0.203  Sum_probs=31.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+|+|||+|..|+=+|..|++.+.+|+++.|++.
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            4799999999999999999999999999999873

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=88.67  E-value=1.8  Score=44.17  Aligned_cols=60  Identities=13%  Similarity=0.097  Sum_probs=44.9

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE----EEEccCc--EEEcCEEEEcccCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE----VELSNGK--KKKYDFIAVCNGAQRV  108 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~----V~~~~g~--~~~~d~vvvAtG~~~~  108 (396)
                      .+..+...|.+.+.+.++.  +.+++.|+++..++++..    +...+++  .+.+++||+|||.++.
T Consensus       127 ~G~~i~~~L~~~~~~~gv~--i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~  192 (566)
T TIGR01812       127 TGHALLHTLYEQCLKLGVS--FFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR  192 (566)
T ss_pred             CHHHHHHHHHHHHHHcCCE--EEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence            4567888888888888887  899999999877655432    1223554  4789999999999653

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK06126 hypothetical protein; Provisional

Probab=88.65  E-value=0.43  Score=48.45  Aligned_cols=33  Identities=27%  Similarity=0.442  Sum_probs=31.1

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+=+|..|++.+-+|+++.|++
T Consensus         8 ~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~   40 (545)
T PRK06126          8 TPVLIVGGGPVGLALALDLGRRGVDSILVERKD   40 (545)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            479999999999999999999999999999876

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=88.64  E-value=0.43  Score=47.28  Aligned_cols=33  Identities=18%  Similarity=0.257  Sum_probs=28.4

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcC------CCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHH------SEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~------~~~V~l~~r~~  169 (396)
                      |+|+|||||.||.=.|..|++.      +.+|+++..++
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~   40 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEE   40 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCC
Confidence            5799999999999999999875      25799998764

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=88.63  E-value=0.62  Score=40.22  Aligned_cols=37  Identities=24%  Similarity=0.325  Sum_probs=32.4

Q ss_pred             CCCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+++++++|+|+ |..|.-++..+++.+.+|+++.|+.
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~   62 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL   62 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            567899999996 9999999999998888999998763

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=88.62  E-value=0.4  Score=47.56  Aligned_cols=32  Identities=22%  Similarity=0.173  Sum_probs=29.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~  169 (396)
                      +|+|||+|.+|+-+|.+|++.  +.+|+++.+..
T Consensus        26 DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~   59 (460)
T TIGR03329        26 DVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL   59 (460)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            699999999999999999997  78999999753

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=88.56  E-value=0.49  Score=45.80  Aligned_cols=34  Identities=21%  Similarity=0.193  Sum_probs=31.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+|+|||+|..|+=+|..|++.+-+|+++.+++.
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            5799999999999999999999999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=88.45  E-value=0.59  Score=46.73  Aligned_cols=34  Identities=26%  Similarity=0.237  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+|+|||+|..|.=.|..|++.+.+|+++.|..
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~   36 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKND   36 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecC
Confidence            4689999999999999999999999999999764

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=88.45  E-value=0.58  Score=43.02  Aligned_cols=37  Identities=19%  Similarity=0.377  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      ...+|+|+|+|+|..|.-++..|+..+ .+|+++.|+.
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~  157 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV  157 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            467899999999999999999999876 8899999874

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=88.38  E-value=0.37  Score=38.89  Aligned_cols=34  Identities=35%  Similarity=0.587  Sum_probs=28.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEecc
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRR  168 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~  168 (396)
                      +.++|+|+|.|..|.++|..|++. ..+++++...
T Consensus         1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            367999999999999999999986 4578888765

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK06175 L-aspartate oxidase; Provisional

Probab=88.38  E-value=2  Score=42.24  Aligned_cols=59  Identities=14%  Similarity=0.110  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHHH-cCCCCceEeCcEEEEEEEeCCe-EEEE-EccCc--EEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDI-WEVE-LSNGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~-~~l~~~i~~~t~V~~v~~~~~~-~~V~-~~~g~--~~~~d~vvvAtG~~~  107 (396)
                      ++.++.+-|.+.+.+ .++.  |+++++|+++..++++ .-|. ..++.  .+.++.||+|||.+.
T Consensus       126 ~g~~l~~~L~~~~~~~~gV~--i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~  189 (433)
T PRK06175        126 TGKKVEKILLKKVKKRKNIT--IIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIG  189 (433)
T ss_pred             ChHHHHHHHHHHHHhcCCCE--EEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence            356777777766654 5777  9999999998765442 2222 22343  478999999999854

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=88.36  E-value=0.46  Score=45.85  Aligned_cols=33  Identities=21%  Similarity=0.343  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -+|+|||+|..|+=+|..|++.+.+|+++.+.+
T Consensus         6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            379999999999999999999999999999875

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=88.35  E-value=0.46  Score=39.00  Aligned_cols=31  Identities=26%  Similarity=0.384  Sum_probs=28.9

Q ss_pred             EEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         139 VLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       139 VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      |+|+|+|..|.=+|..|++.+.+|+++.|++
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999989999999874

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=88.32  E-value=0.43  Score=46.87  Aligned_cols=32  Identities=34%  Similarity=0.533  Sum_probs=26.3

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|||||||.+|+=.|..+++.+.+|.|+.+.+
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~   32 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGG   32 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence            48999999999999999999999999999876

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=88.29  E-value=1.8  Score=44.11  Aligned_cols=57  Identities=14%  Similarity=0.141  Sum_probs=43.4

Q ss_pred             ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeE-EEEEccCcEEEcCEEEEcccCC
Q psy2343          47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIW-EVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~-~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      .+..+...+...++.. ++.  + ++++|+++..+++.. -|.+.+|..+.++.||+|||.+
T Consensus        98 Dr~ly~kaL~e~L~~~~nV~--I-~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF  156 (618)
T PRK05192         98 DRKLYRAAMREILENQPNLD--L-FQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF  156 (618)
T ss_pred             CHHHHHHHHHHHHHcCCCcE--E-EEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence            4567888888888765 554  4 678898887665543 4777888889999999999984

>KOG1298|consensus

Probab=88.19  E-value=0.6  Score=44.07  Aligned_cols=31  Identities=29%  Similarity=0.465  Sum_probs=29.7

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .|+|||+|..|.-+|..|++.+++|+++.|.
T Consensus        47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   47 DVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             cEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            4999999999999999999999999999996

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=88.18  E-value=1.9  Score=41.79  Aligned_cols=59  Identities=14%  Similarity=0.135  Sum_probs=49.5

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC-cEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g-~~~~~d~vvvAtG~~~  107 (396)
                      .+..+.++|...|+..|..  ++..++|..+..+++.+.+.+..+ .+++++.||.|+|..+
T Consensus        93 ~R~~fd~~La~~A~~aGae--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s  152 (396)
T COG0644          93 DRAKFDKWLAERAEEAGAE--LYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS  152 (396)
T ss_pred             EhHHhhHHHHHHHHHcCCE--EEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence            5788999999999999988  999999999999876666655443 5689999999999843

>PRK07804 L-aspartate oxidase; Provisional

Probab=88.12  E-value=1.8  Score=43.88  Aligned_cols=60  Identities=7%  Similarity=-0.044  Sum_probs=44.8

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-C---eEEEE-----EccC-cEEEcCEEEEcccCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-D---IWEVE-----LSNG-KKKKYDFIAVCNGAQRV  108 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~---~~~V~-----~~~g-~~~~~d~vvvAtG~~~~  108 (396)
                      ++.++.+-|.+.+++.++.  +.+++.|+++..++ +   +..+.     ..++ ..+.+++||+|||.++.
T Consensus       142 ~G~~i~~~L~~~~~~~gV~--i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~  211 (541)
T PRK07804        142 TGAEVQRALDAAVRADPLD--IREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ  211 (541)
T ss_pred             CHHHHHHHHHHHHHhCCCE--EEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence            5778999999999888877  88999999987653 2   23332     1223 24789999999999753

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=88.11  E-value=2.3  Score=43.52  Aligned_cols=60  Identities=10%  Similarity=0.026  Sum_probs=44.0

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEc--cCc-EEEcC-EEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELS--NGK-KKKYD-FIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~--~g~-~~~~d-~vvvAtG~~~  107 (396)
                      .++.++.+.|...+++.+++  |+++++|+++..++++.. |...  ++. .+.++ .||+|||.+.
T Consensus       211 ~~G~~l~~~L~~~~~~~Gv~--i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~  275 (574)
T PRK12842        211 TSGNALAARLAKSALDLGIP--ILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS  275 (574)
T ss_pred             ccHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence            35677888888889998987  999999999887655332 3332  333 35675 8999999954

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=88.07  E-value=0.49  Score=45.51  Aligned_cols=32  Identities=19%  Similarity=0.242  Sum_probs=29.9

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||||.+|.=+|..|++.+-+|+++.+.+
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~   34 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence            69999999999999999999999999999864

>TIGR02731 phytoene_desat phytoene desaturase

Probab=87.90  E-value=0.49  Score=46.75  Aligned_cols=32  Identities=25%  Similarity=0.253  Sum_probs=0.0

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||+|.+|+-.|..|++.+.+|+++.+++
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~   32 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARD   32 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCC

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=87.84  E-value=0.91  Score=38.93  Aligned_cols=33  Identities=18%  Similarity=0.291  Sum_probs=26.1

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|.|||.|..|.-+|..+++.+.+|+.+...+
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            379999999999999999999999999997653

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=87.77  E-value=0.52  Score=45.46  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=30.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||||..|.=+|..|++.+-+|+++.+++
T Consensus         5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            69999999999999999999999999999875

>KOG2404|consensus

Probab=87.71  E-value=1  Score=41.61  Aligned_cols=61  Identities=16%  Similarity=0.169  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEc--cCc--EEEcCEEEEcccCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELS--NGK--KKKYDFIAVCNGAQRV  108 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~--~g~--~~~~d~vvvAtG~~~~  108 (396)
                      -..+...++..++..--.-.|..|++|++|.+.+++ .-|...  +|+  ...++.||+|||.++.
T Consensus       142 ~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y  207 (477)
T KOG2404|consen  142 VKALSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY  207 (477)
T ss_pred             HHHHHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence            344455555555544222247889999999976443 334443  343  3789999999999763

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=87.70  E-value=1.4  Score=46.52  Aligned_cols=46  Identities=17%  Similarity=0.137  Sum_probs=35.9

Q ss_pred             HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343          55 LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        55 l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      .+.+++..+    |++|+.|++|++.+++|.|+ .+|+++.||+||+++=.
T Consensus       440 i~aLa~~L~----I~ln~~V~~I~~~~dgV~V~-~~G~~~~AD~VIvTvPl  485 (808)
T PLN02328        440 VRELAKDLP----IFYERTVESIRYGVDGVIVY-AGGQEFHGDMVLCTVPL  485 (808)
T ss_pred             HHHHHhhCC----cccCCeeEEEEEcCCeEEEE-eCCeEEEcCEEEECCCH
Confidence            344455443    89999999999988888874 46777999999999876

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=87.67  E-value=0.72  Score=40.95  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCC-C--cEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHS-E--KVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~--~V~l~~r~~  169 (396)
                      .+++++|+|+|+|..|.-+|..|...+ +  +++++.|++
T Consensus        22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            578899999999999999999998864 4  699999875

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=87.66  E-value=0.52  Score=47.00  Aligned_cols=32  Identities=19%  Similarity=0.196  Sum_probs=29.0

Q ss_pred             eEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~  169 (396)
                      .|+|||||..|+-+|.+|++.  +.+|+++.|..
T Consensus         2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~   35 (483)
T TIGR01320         2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERLD   35 (483)
T ss_pred             cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            589999999999999999996  78999999853

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=87.63  E-value=2  Score=41.80  Aligned_cols=60  Identities=20%  Similarity=0.199  Sum_probs=43.1

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEc---cCc--EEEcCEEEEcccCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELS---NGK--KKKYDFIAVCNGAQRV  108 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~---~g~--~~~~d~vvvAtG~~~~  108 (396)
                      ++..+.+-|.+.++..+++  |+++++|+++..++++.+ |...   +++  .+.+++||+|||.+..
T Consensus       139 ~g~~~~~~l~~~~~~~gv~--i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVD--IRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEE--EEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             cHHHHHHHHHHHHhhcCee--eeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            5788999999999999977  999999999988765321 2222   344  4789999999999654

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK07538 hypothetical protein; Provisional

Probab=87.63  E-value=0.57  Score=45.67  Aligned_cols=33  Identities=21%  Similarity=0.283  Sum_probs=30.7

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      +|+|||||.+|+=+|..|++.+-+|+++.|++.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE   34 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence            699999999999999999999999999999763

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=87.62  E-value=0.63  Score=45.17  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=30.8

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .|+|||+|.+|.-+|..|++.+-+|.++.+++.
T Consensus         5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~   37 (396)
T COG0644           5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE   37 (396)
T ss_pred             eEEEECCchHHHHHHHHHHHcCCeEEEEecCCC
Confidence            699999999999999999999989999999764

>TIGR02734 crtI_fam phytoene desaturase

Probab=87.38  E-value=0.48  Score=47.51  Aligned_cols=31  Identities=26%  Similarity=0.369  Sum_probs=29.1

Q ss_pred             EEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         139 VLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       139 VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      |+|||+|.+|.-+|..|++.+.+|+++.++.
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~   31 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRD   31 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            6899999999999999999999999999875

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PLN02576 protoporphyrinogen oxidase

Probab=87.38  E-value=0.62  Score=46.65  Aligned_cols=34  Identities=35%  Similarity=0.393  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~  169 (396)
                      ..+|+|||||.+|.=.|..|++. +.+|+++..++
T Consensus        12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~   46 (496)
T PLN02576         12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARD   46 (496)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence            35799999999999999999998 78999999875

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=87.20  E-value=0.62  Score=48.09  Aligned_cols=35  Identities=29%  Similarity=0.333  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +..+|+|||||..|+=+|..|++.+-+|+++.|.+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            45689999999999999999999999999999975

>PRK10015 oxidoreductase; Provisional

Probab=87.18  E-value=0.59  Score=45.92  Aligned_cols=33  Identities=27%  Similarity=0.283  Sum_probs=30.8

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .|+|||+|.+|+=+|..|++.+.+|.++.|.+.
T Consensus         7 DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~   39 (429)
T PRK10015          7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGDS   39 (429)
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            699999999999999999999999999998764

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=87.03  E-value=0.61  Score=42.44  Aligned_cols=37  Identities=16%  Similarity=0.158  Sum_probs=32.4

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      .+++++|+|||.|-.|.++|..|++.+ .+++++....
T Consensus        27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            457889999999999999999999986 7899998653

>PLN02487 zeta-carotene desaturase

Probab=87.03  E-value=0.74  Score=46.81  Aligned_cols=34  Identities=26%  Similarity=0.366  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~  108 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRP  108 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCC
Confidence            3599999999999999999999999999999865

>PRK11445 putative oxidoreductase; Provisional

Probab=86.95  E-value=0.67  Score=44.12  Aligned_cols=32  Identities=22%  Similarity=0.299  Sum_probs=29.6

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      +|+|||+|.+|+=+|..|++. .+|+++.|++.
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~   34 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ   34 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence            699999999999999999998 89999999864

>PRK07190 hypothetical protein; Provisional

Probab=86.95  E-value=0.66  Score=46.36  Aligned_cols=34  Identities=18%  Similarity=0.133  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      -.|+|||+|.+|+=+|..|++.+.+|.++.+.+.
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~   39 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG   39 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence            3799999999999999999999989999998863

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=86.73  E-value=0.67  Score=45.07  Aligned_cols=32  Identities=16%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .+|+|||+|.+|+=+|..|++.+-+|+++.+.
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            47999999999999999999999999999986

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=86.71  E-value=0.89  Score=41.89  Aligned_cols=37  Identities=19%  Similarity=0.207  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~  169 (396)
                      ..++|+|+|||+|-+|--++..|+.. .++|+++.|+.
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~  159 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP  159 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            35689999999999999999999887 46899998874

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=86.61  E-value=3.5  Score=42.09  Aligned_cols=57  Identities=18%  Similarity=0.240  Sum_probs=43.9

Q ss_pred             ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEe--CCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343          47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQY--EDIWEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~--~~~~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      .+..+...++..+++. ++.   .++.+|+.+..+  +....|.+.+|..+.+|.||+|||.+
T Consensus        94 Dr~~y~~~L~e~Le~~pgV~---Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtf  153 (617)
T TIGR00136        94 DKVLYRKAMRNALENQPNLS---LFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTF  153 (617)
T ss_pred             CHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcc
Confidence            4678888999988887 443   356688887654  34466888888889999999999994

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PLN02985 squalene monooxygenase

Probab=86.54  E-value=0.69  Score=46.55  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+|+|||+|..|+=+|..|++.+.+|+++.|.+
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            3479999999999999999999999999999975

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=86.54  E-value=2.6  Score=43.18  Aligned_cols=59  Identities=20%  Similarity=0.172  Sum_probs=44.2

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC----CeE----EEEEccCc--EEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE----DIW----EVELSNGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~----~~~----~V~~~~g~--~~~~d~vvvAtG~~~  107 (396)
                      ++..+.+-|.+.+.+.+++  +..++.|+++..++    ++.    .+...+++  .+.+++||+|||.++
T Consensus       138 tG~~i~~~L~~~~~~~gv~--i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        138 TGHMILQTLYQNCVKHGVE--FFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             CHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            4678999999999888887  89999999986543    332    11223454  478999999999975

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=86.50  E-value=1.8  Score=41.28  Aligned_cols=32  Identities=16%  Similarity=0.193  Sum_probs=29.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|.|||+|..|.=.+.-+++.+++|+.+.-.+
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            68999999999999999999999999987643

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=86.47  E-value=2.6  Score=38.62  Aligned_cols=36  Identities=22%  Similarity=0.239  Sum_probs=29.4

Q ss_pred             CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      +++||+|+|||.+ ..|-=+|..|.+....||+++.+
T Consensus       155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~  191 (284)
T PRK14190        155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK  191 (284)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999954 56888888888888889988654

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=86.47  E-value=0.89  Score=37.42  Aligned_cols=36  Identities=25%  Similarity=0.422  Sum_probs=31.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~  169 (396)
                      .++++|+|+|+|..|..++..+.+. ..+|+++.|++
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            5688999999999999999999887 47888888764

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=86.40  E-value=1.8  Score=39.70  Aligned_cols=37  Identities=22%  Similarity=0.228  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++.||+|+|||.+ ..|.=+|..|.+....||+++++.
T Consensus       152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T  189 (287)
T PRK14173        152 PLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT  189 (287)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC
Confidence            5789999999955 568889999988888899887653

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=86.40  E-value=0.68  Score=47.06  Aligned_cols=33  Identities=30%  Similarity=0.417  Sum_probs=31.1

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+=+|..|++.+.+|+++.+++
T Consensus        24 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~   56 (547)
T PRK08132         24 HPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD   56 (547)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            479999999999999999999999999999886

>PLN02529 lysine-specific histone demethylase 1

Probab=86.31  E-value=2.1  Score=44.91  Aligned_cols=37  Identities=14%  Similarity=0.038  Sum_probs=31.5

Q ss_pred             eEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343          68 SIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        68 i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      |++|+.|++|+..+++|+|++ ++.++.||+||+++=.
T Consensus       369 IrLnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVTVPl  405 (738)
T PLN02529        369 IFYGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCTVPL  405 (738)
T ss_pred             EEcCCceeEEEEcCCeEEEEE-CCEEEEcCEEEECCCH
Confidence            999999999999888898876 3456899999998754

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=86.30  E-value=1.2  Score=41.14  Aligned_cols=37  Identities=19%  Similarity=0.181  Sum_probs=33.6

Q ss_pred             CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +++||+|+|||.| ..|.-+|..|.+.+..|++++|+.
T Consensus       156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t  193 (301)
T PRK14194        156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS  193 (301)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC
Confidence            6789999999986 999999999999999999998764

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=86.28  E-value=1.8  Score=39.47  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=30.2

Q ss_pred             CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++.||+|+|||.+ ..|.=+|..|......|++++.+.
T Consensus       155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T  192 (278)
T PRK14172        155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT  192 (278)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC
Confidence            6789999999954 568889998888778899887643

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=86.27  E-value=0.69  Score=45.54  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=29.0

Q ss_pred             eEEEEcCCCcHHHHHHHHhc----CCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASH----HSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~----~~~~V~l~~r~~  169 (396)
                      +|+|||||.+|+=+|..|++    .+-+|+++.+++
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            59999999999999999998    688999999854

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=86.20  E-value=1.8  Score=39.56  Aligned_cols=36  Identities=28%  Similarity=0.311  Sum_probs=29.6

Q ss_pred             CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ++.||+|+|||.+ ..|-=+|..|.+....||+++.+
T Consensus       154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~  190 (284)
T PRK14170        154 QIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR  190 (284)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC
Confidence            6789999999965 55788888888887888888754

>PRK06487 glycerate dehydrogenase; Provisional

Probab=86.19  E-value=1.3  Score=41.55  Aligned_cols=36  Identities=19%  Similarity=0.239  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ++.||+|.|||-|..|..+|..+...+-+|....|.
T Consensus       145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~  180 (317)
T PRK06487        145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLP  180 (317)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence            678999999999999999999998888888877664

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=86.12  E-value=0.77  Score=45.19  Aligned_cols=32  Identities=28%  Similarity=0.362  Sum_probs=29.5

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      .|||||+|.+|+=.|..+++.+ .+|.++.+.+
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~   33 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMP   33 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCC
Confidence            4899999999999999999998 8999999865

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=86.08  E-value=0.83  Score=46.30  Aligned_cols=35  Identities=26%  Similarity=0.284  Sum_probs=31.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      ..+|+|||+|.+|+=+|..|++.+.+|+++.|.+.
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~   44 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT   44 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            35799999999999999999999999999999863

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.05  E-value=0.79  Score=42.31  Aligned_cols=33  Identities=33%  Similarity=0.339  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++|.|||+|..|..+|..++..+.+|++..+.+
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   38 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE   38 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence            489999999999999999999999999999875

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=85.84  E-value=3.4  Score=42.75  Aligned_cols=57  Identities=18%  Similarity=0.213  Sum_probs=46.0

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ++.++.+.|.+.   .+. ..++++++|++++.+++.++|++.+|+++.+|.||.|-|.++
T Consensus       192 ~R~~L~~~L~~a---lg~-~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S  248 (668)
T PLN02927        192 SRMTLQQILARA---VGE-DVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWS  248 (668)
T ss_pred             eHHHHHHHHHhh---CCC-CEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCc
Confidence            577788877443   332 236889999999988888999998988899999999999976

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=85.84  E-value=2.5  Score=40.59  Aligned_cols=59  Identities=22%  Similarity=0.204  Sum_probs=45.4

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      +...+..-|...+.+.+.. .+..++.|..++.+.+.|.|.+.+|+ +.+|.||+|+|.+.
T Consensus       154 ~p~~~~~~l~~~~~~~G~~-~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~  212 (387)
T COG0665         154 DPRLLTRALAAAAEELGVV-IIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWA  212 (387)
T ss_pred             CHHHHHHHHHHHHHhcCCe-EEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHH
Confidence            4467777777777777742 25668899888873267889998888 89999999999864

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=85.83  E-value=1.8  Score=40.82  Aligned_cols=36  Identities=25%  Similarity=0.327  Sum_probs=29.4

Q ss_pred             CCCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      +++||+|+|||. ...|.=+|..|.+....|++++.+
T Consensus       228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~  264 (364)
T PLN02616        228 EIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR  264 (364)
T ss_pred             CCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC
Confidence            568999999995 456888888888887888888764

>PLN02529 lysine-specific histone demethylase 1

Probab=85.74  E-value=0.81  Score=47.86  Aligned_cols=35  Identities=29%  Similarity=0.282  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +.++|+|||+|.+|+.+|..|++.+.+|+++..+.
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~  193 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRN  193 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCc
Confidence            46789999999999999999999999999998864

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=85.72  E-value=0.93  Score=40.85  Aligned_cols=53  Identities=19%  Similarity=0.460  Sum_probs=41.1

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc-EEEcCEEEEcccC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGA  105 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~-~~~~d~vvvAtG~  105 (396)
                      |.-+.+.+||.   .  ++.  |+++++|+.|.+.++.|++++++|. ...||.||||.=.
T Consensus       105 pgmsalak~LA---t--dL~--V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PA  158 (331)
T COG3380         105 PGMSALAKFLA---T--DLT--VVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPA  158 (331)
T ss_pred             cchHHHHHHHh---c--cch--hhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCC
Confidence            45566666552   2  344  8899999999999999999997654 5789999999765

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=85.67  E-value=3.6  Score=39.74  Aligned_cols=59  Identities=22%  Similarity=0.225  Sum_probs=42.9

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEE-eCCeEEEEE-ccCc--EEEcCEEEEcccCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ-YEDIWEVEL-SNGK--KKKYDFIAVCNGAQRV  108 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~-~~~~~~V~~-~~g~--~~~~d~vvvAtG~~~~  108 (396)
                      ..++.+-|...+...++.  ++++++|++++. +++.-.|+. .+|+  ++++|.||-|-|.++.
T Consensus       102 ~~~l~~~Ll~~a~~~gv~--v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~  164 (392)
T PRK08243        102 QTEVTRDLMAARLAAGGP--IRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV  164 (392)
T ss_pred             cHHHHHHHHHHHHhCCCe--EEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence            445666666666666776  999999999986 444455665 3564  5789999999999774

>KOG1276|consensus

Probab=85.66  E-value=1  Score=43.12  Aligned_cols=41  Identities=24%  Similarity=0.148  Sum_probs=31.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcE--EEEecc---Cceeec
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKV--YHSTRR---GYHYYP  174 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V--~l~~r~---~~~~~p  174 (396)
                      ..+++|+|||||.||.-+|..|++..-++  +++.-+   +.|+..
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS   54 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS   54 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence            45789999999999999999999985544  455543   457665

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=85.58  E-value=2.1  Score=39.10  Aligned_cols=36  Identities=17%  Similarity=0.223  Sum_probs=29.8

Q ss_pred             CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ++.||+|+|||.+ ..|-=+|..|.+....||+++.+
T Consensus       154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~  190 (282)
T PRK14166        154 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK  190 (282)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC
Confidence            5789999999955 56788898888888889988765

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=85.57  E-value=0.73  Score=44.50  Aligned_cols=32  Identities=25%  Similarity=0.290  Sum_probs=29.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcC---CCcEEEEecc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHH---SEKVYHSTRR  168 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~---~~~V~l~~r~  168 (396)
                      -+|+|||+|.+|.=+|..|++.   +-+|+++.|.
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            3699999999999999999997   8999999995

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=85.48  E-value=2.1  Score=39.30  Aligned_cols=36  Identities=14%  Similarity=0.202  Sum_probs=29.4

Q ss_pred             CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ++.||+|+|||.+ ..|.=+|..|.+....||+++.+
T Consensus       156 ~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~  192 (288)
T PRK14171        156 NLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK  192 (288)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC
Confidence            5789999999955 56788888888877888888754

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=85.46  E-value=0.75  Score=45.97  Aligned_cols=33  Identities=27%  Similarity=0.423  Sum_probs=29.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~  169 (396)
                      -.|+|||||.+|+-+|.+|++..  .+|+++.+..
T Consensus        46 ~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~   80 (497)
T PTZ00383         46 YDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS   80 (497)
T ss_pred             ccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence            47999999999999999999863  5899999874

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=85.45  E-value=1  Score=39.91  Aligned_cols=33  Identities=24%  Similarity=0.456  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++++|||+|..|..+|..|++.+.+|.++.+.+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            579999999999999999999999999999875

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=85.45  E-value=1  Score=41.77  Aligned_cols=37  Identities=27%  Similarity=0.409  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ...+++|+|+|.|..|.-++..|...+.+|+++.|++
T Consensus       149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4568999999999999999999999888999998874

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=85.45  E-value=1.1  Score=47.38  Aligned_cols=36  Identities=31%  Similarity=0.262  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ...++|+|||+|.+|.-+|..|++.+.+|+++..+.
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~  271 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA  271 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            456789999999999999999999988999998864

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=85.42  E-value=1.2  Score=44.82  Aligned_cols=37  Identities=19%  Similarity=0.247  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcC----CCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHH----SEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~----~~~V~l~~r~~  169 (396)
                      ....++|+|||||.+|.-.|..|++.    +.+|+++.+.+
T Consensus        19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~   59 (576)
T PRK13977         19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELD   59 (576)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCC
Confidence            44568999999999999999999985    46899999875

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=85.42  E-value=0.87  Score=39.58  Aligned_cols=36  Identities=17%  Similarity=0.329  Sum_probs=31.3

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEecc
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~  168 (396)
                      .++.++|+|||+|..|.++|..|++.+- +++++.+.
T Consensus        18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3577899999999999999999999865 68888775

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=85.40  E-value=0.82  Score=45.40  Aligned_cols=33  Identities=27%  Similarity=0.286  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -.|+|||+|.+|+=.|..+++.+.+|.++.+.+
T Consensus         5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~   37 (466)
T PRK08274          5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAP   37 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            369999999999999999999989999999865

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=85.40  E-value=2.8  Score=42.77  Aligned_cols=60  Identities=13%  Similarity=0.071  Sum_probs=44.8

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE----EEEccCc--EEEcCEEEEcccCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE----VELSNGK--KKKYDFIAVCNGAQRV  108 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~----V~~~~g~--~~~~d~vvvAtG~~~~  108 (396)
                      ++..+..-|.+.+.+.++.  |..++.|+++-.++++..    +...+|+  .+.+++||+|||.++.
T Consensus       117 ~G~~i~~~L~~~~~~~gi~--i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~  182 (565)
T TIGR01816       117 TGHAILHTLYQQNLKADTS--FFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGR  182 (565)
T ss_pred             chHHHHHHHHHHHHhCCCE--EEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCccc
Confidence            5678999999999888887  889999999765544321    1223454  3679999999999753

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=85.37  E-value=4.6  Score=41.59  Aligned_cols=59  Identities=15%  Similarity=0.036  Sum_probs=42.3

Q ss_pred             ChHHHHHHHHHHHHHcC-CCCceEeCcEEEEEEEeCCeEE-E---EEccCc--EEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWE-V---ELSNGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~-l~~~i~~~t~V~~v~~~~~~~~-V---~~~~g~--~~~~d~vvvAtG~~~  107 (396)
                      .+..+.+-|...+++.+ +.  ++++++|+++..++++.. |   .+.+++  .+.+++||+|||.++
T Consensus       130 ~G~~~~~~L~~~a~~~ggV~--i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  195 (608)
T PRK06854        130 NGESYKPIVAEAAKKALGDN--VLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA  195 (608)
T ss_pred             ChHHHHHHHHHHHHhcCCCE--EEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence            45677777877777664 76  899999999876544321 2   233453  478999999999865

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=85.34  E-value=0.78  Score=44.72  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=28.5

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .|+|||+|.+|+=.|..+++.+.+|.++...+.
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~   33 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR   33 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence            489999999999999999999999999998764

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.33  E-value=0.96  Score=42.41  Aligned_cols=33  Identities=21%  Similarity=0.194  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++|.|||+|..|..+|..++..+.+|++..+.+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            689999999999999999999999999998865

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=85.27  E-value=0.87  Score=47.11  Aligned_cols=32  Identities=28%  Similarity=0.392  Sum_probs=0.0

Q ss_pred             eEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~  169 (396)
                      +|+|||+|.+|+=+|..|++. +-+|.++.+++
T Consensus        34 dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~   66 (634)
T PRK08294         34 DVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP   66 (634)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=85.16  E-value=0.79  Score=45.86  Aligned_cols=33  Identities=12%  Similarity=0.130  Sum_probs=29.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~  169 (396)
                      -.|+|||||.+|+-+|.+|++.  +.+|+++.|..
T Consensus         6 ~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~   40 (494)
T PRK05257          6 TDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD   40 (494)
T ss_pred             ceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            3799999999999999999985  56899999864

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=85.12  E-value=2.4  Score=38.75  Aligned_cols=36  Identities=19%  Similarity=0.150  Sum_probs=29.7

Q ss_pred             CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      +++||+|+|||.+ ..|-=+|..|.+....|++++.+
T Consensus       155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~  191 (282)
T PRK14180        155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF  191 (282)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC
Confidence            5789999999955 56888999888887889888764

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=85.08  E-value=1.5  Score=42.79  Aligned_cols=38  Identities=26%  Similarity=0.369  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++.||+|.|||.|..|..+|..+...+-+|....|.+
T Consensus       147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~  184 (409)
T PRK11790        147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIED  184 (409)
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            46899999999999999999999999888888887654

>PLN02976 amine oxidase

Probab=85.05  E-value=2.5  Score=47.26  Aligned_cols=49  Identities=18%  Similarity=0.099  Sum_probs=37.7

Q ss_pred             HHHHHHHHHcCCCCceEeCcEEEEEEEe----------CCeEEEEEccCcEEEcCEEEEcccC
Q psy2343          53 DYLRSYAKKFDVYNHSIFNTEVINLEQY----------EDIWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        53 ~Yl~~~~~~~~l~~~i~~~t~V~~v~~~----------~~~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      .-++.+++..  .  |+||+.|++|++.          ++++.|++.+|+++.+|+||+++=.
T Consensus       937 qLIeALAe~L--~--IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPL  995 (1713)
T PLN02976        937 NVVESLAEGL--D--IHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPL  995 (1713)
T ss_pred             HHHHHHHhhC--C--eecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCH
Confidence            3444445543  3  9999999999983          3578999999988999999998654

>PRK07121 hypothetical protein; Validated

Probab=85.04  E-value=3.7  Score=41.13  Aligned_cols=59  Identities=19%  Similarity=0.188  Sum_probs=44.0

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCe-EEEEEc-cCc--EEEc-CEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDI-WEVELS-NGK--KKKY-DFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~-~~V~~~-~g~--~~~~-d~vvvAtG~~~  107 (396)
                      .+..+.+.|...+++.++.  |+++++|+++..+ +++ .-|... +++  .+.+ +.||+|||.+.
T Consensus       175 ~g~~~~~~L~~~~~~~gv~--i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~  239 (492)
T PRK07121        175 GGAMLMDPLAKRAAALGVQ--IRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA  239 (492)
T ss_pred             chHHHHHHHHHHHHhCCCE--EEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence            4677889999999998887  9999999998875 332 223332 232  3678 99999999865

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=85.03  E-value=2.3  Score=39.18  Aligned_cols=36  Identities=14%  Similarity=0.107  Sum_probs=29.7

Q ss_pred             CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ++.||+|+|||.+ ..|.=+|..|.+....||+++.+
T Consensus       157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~  193 (294)
T PRK14187        157 NLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA  193 (294)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCC
Confidence            6789999999955 56788888888888889888764

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=85.02  E-value=2.8  Score=41.75  Aligned_cols=57  Identities=14%  Similarity=0.011  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC--CeEE-E---EEccC---cEEEcCEEEEcccCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE--DIWE-V---ELSNG---KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~--~~~~-V---~~~~g---~~~~~d~vvvAtG~~~  107 (396)
                      +.+.+-+.++.++.|.+  |+++++|++|+.++  ++|. |   .+.+|   +++.+|+||+|+..+.
T Consensus       219 ~~l~~pl~~~L~~~Gg~--i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~  284 (474)
T TIGR02732       219 KYLTKPILEYIEARGGK--FHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPG  284 (474)
T ss_pred             hhHHHHHHHHHHHCCCE--EECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHH
Confidence            33455566666667765  99999999999853  3442 3   34433   4588999999999754

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02612 phytoene desaturase

Probab=84.93  E-value=1.3  Score=45.20  Aligned_cols=38  Identities=21%  Similarity=0.240  Sum_probs=33.2

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ....+++|+|||+|.+|+-+|..|++.+.+|+++.++.
T Consensus        89 ~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~  126 (567)
T PLN02612         89 RPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARD  126 (567)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence            34567899999999999999999999988999998753

>TIGR02028 ChlP geranylgeranyl reductase

Probab=84.91  E-value=6.4  Score=38.19  Aligned_cols=59  Identities=19%  Similarity=0.208  Sum_probs=44.0

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe---CCeEEEEEc--c-----C--cEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVELS--N-----G--KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~---~~~~~V~~~--~-----g--~~~~~d~vvvAtG~~~  107 (396)
                      ..++.+-++|.+.+.+.|..  ++.. +++++...   ++.+.|+..  +     |  .++.+|.||.|+|.++
T Consensus        90 v~R~~~d~~L~~~a~~~G~~--v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S  160 (398)
T TIGR02028        90 LRREVLDSFLRRRAADAGAT--LING-LVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS  160 (398)
T ss_pred             eeHHHHHHHHHHHHHHCCcE--EEcc-eEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence            57899999999999999986  6555 57777532   456777642  1     2  3589999999999954

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=84.76  E-value=1  Score=41.55  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=27.3

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~  170 (396)
                      .++|||+|..|+=+|..|++.. .+|.++.+.+.
T Consensus         2 D~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~   35 (296)
T PF00732_consen    2 DYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR   35 (296)
T ss_dssp             EEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence            4899999999999999999986 58999998764

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=84.66  E-value=8.2  Score=38.03  Aligned_cols=56  Identities=13%  Similarity=0.090  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC--eEEEEEccCcEEEcCEEEEcccC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~--~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      ..++.+-|.+.++.+|..  ++++++|.+|..+++  .+.|++.+|+++.+++||.....
T Consensus       231 ~g~L~qal~r~~a~~Gg~--~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~  288 (443)
T PTZ00363        231 LGGLPQAFSRLCAIYGGT--YMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSY  288 (443)
T ss_pred             HHHHHHHHHHHHHHcCcE--EEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccc
Confidence            457888888888888876  999999999987643  36788889988999999886555

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=84.64  E-value=2.6  Score=38.94  Aligned_cols=36  Identities=22%  Similarity=0.282  Sum_probs=30.0

Q ss_pred             CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ++.||+|+|||.+ ..|.=+|..|.+....||+++.+
T Consensus       164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~  200 (299)
T PLN02516        164 PIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR  200 (299)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC
Confidence            6789999999955 56888999998888889988754

>PRK00536 speE spermidine synthase; Provisional

Probab=84.56  E-value=1.4  Score=39.98  Aligned_cols=33  Identities=18%  Similarity=0.072  Sum_probs=27.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..|+|+|||||.-|  +++|+++...+|+++.-.+
T Consensus        72 ~pk~VLIiGGGDGg--~~REvLkh~~~v~mVeID~  104 (262)
T PRK00536         72 ELKEVLIVDGFDLE--LAHQLFKYDTHVDFVQADE  104 (262)
T ss_pred             CCCeEEEEcCCchH--HHHHHHCcCCeeEEEECCH
Confidence            35899999999977  6899999877899987543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	396
4a9w_A	357	Flavin-Containing Monooxygenase From Stenotrophomon		2e-13
3uov_A	545	Crystal Structure Of Otemo (Fad Bound Form 1) Lengt		7e-11
2xvi_A	464	Crystal Structure Of The Mutant Bacterial Flavin Co		1e-10
2xve_A	464	Crystal Structure Of Bacterial Flavin-Containing Mo		3e-10
2xlp_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		4e-10
2xls_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		5e-10
2xvf_A	464	Crystal Structure Of Bacterial Flavin-Containing Mo		5e-10
2vq7_A	461	Bacterial Flavin-Containing Monooxygenase In Comple		6e-10
2xlr_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		6e-10
3gwd_A	540	Closed Crystal Structure Of Cyclohexanone Monooxyge		1e-09
3ucl_A	573	Cyclohexanone-Bound Crystal Structure Of Cyclohexan		1e-09
1vqw_A	457	Crystal Structure Of A Protein With Similarity To F		2e-07
2gv8_A	447	Crystal Structure Of Flavin-Containing Monooxygenas		2e-07
2ylz_A	542	Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O		2e-07
2ylw_A	542	Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O		2e-07
1w4x_A	542	Phenylacetone Monooxygenase, A Baeyer-villiger Mono		3e-07
2ylx_A	542	Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O		3e-07
4aos_A	549	Oxidized Steroid Monooxygenase Bound To Nadp Length		2e-05
4ap3_A	549	Oxidized Steroid Monooxygenase Bound To Nadp Length		2e-05
4ap1_A	549	Oxidized Steroid Monooxygenase Bound To Nadp Length		2e-05

>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas Maltophilia Length = 357

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 10/164 (6%)
Query: 2   ESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKK 61
           E+  GG W         + SLHL SP   + +P +PMP +   YP  + +L YL  Y +K
Sbjct: 35  EASPGGAWQ------HAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLAQYEQK 88
Query: 62  FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY--FS 119
           + +    +    V  +  + +   V   +G++     +    G    A  P Y G   F+
Sbjct: 89  YAL--PVLRPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFA 146
Query: 120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVY 163
           G  LHS  Y +P      RV ++G GNSG  I  + S  +E  +
Sbjct: 147 GIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTW 190

>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1) Length = 545

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 81/208 (38%), Gaps = 30/208 (14%)
Query: 4   DLGGVW--NSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKK 61
           D+GG W  N    C     S           +P++   +N+   P    ML Y+   A  
Sbjct: 43  DVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPE---MLRYVNRAADA 99
Query: 62  FDVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY-- 117
            DV  H  FNT V      E+  +WEV L N +     F+    G    +R P+  G   
Sbjct: 100 MDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDS 159
Query: 118 FSGEILHSMDYKSPDQ-------IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170
           F GE  HS  + +  +          KRV V+G G +G  I   A+  ++++Y   R   
Sbjct: 160 FKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQR--- 216
Query: 171 HYYPKFIDGKPTPQWMLQLGNKFSSKEE 198
                      TP W   LGN   SKE+
Sbjct: 217 -----------TPNWCTPLGNSPMSKEK 233

>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin Containing Monooxygenase (Y207s) Length = 464

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 28/207 (13%)
Query: 2   ESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV--YPN 47
           ++D GG WN     G           +Y  L    PK   +  DY   +++  P+  YP 
Sbjct: 40  QADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPP 99
Query: 48  HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKYDFIA 100
             ++ DY++   +K  V  +  FNT V ++E  ED   + V + +        +++D++ 
Sbjct: 100 REVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVV 159
Query: 101 VCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH 158
            C G       P + G+  F G ILH+ D++   + ++K VL+VG+ +S  DI      +
Sbjct: 160 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSSSAEDIGSQCYKY 219
Query: 159 SEK----VYHSTRRGYHYYPKFIDGKP 181
             K     Y +   GY  +P+  D +P
Sbjct: 220 GAKKLISCYRTAPMGYK-WPENWDERP 245

>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 28/207 (13%)
Query: 2   ESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV--YPN 47
           ++D GG WN     G           +Y  L    PK   +  DY   +++  P+  YP 
Sbjct: 40  QADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPP 99
Query: 48  HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKYDFIA 100
             ++ DY++   +K  V  +  FNT V ++E  ED   + V + +        +++D++ 
Sbjct: 100 REVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVV 159
Query: 101 VCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH 158
            C G       P + G+  F G ILH+ D++   + ++K VL+VG+  S  DI      +
Sbjct: 160 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKY 219
Query: 159 SEK----VYHSTRRGYHYYPKFIDGKP 181
             K     Y +   GY  +P+  D +P
Sbjct: 220 GAKKLISCYRTAPMGYK-WPENWDERP 245

>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen- Activation By Flavin-Containing Monooxygenase: Asn78ser Mutant Length = 461

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 28/207 (13%)
Query: 2   ESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV--YPN 47
           ++D GG WN     G           +Y  L    PK   +  DY   +++  P+  YP 
Sbjct: 45  QADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSSGPKECLEFADYTFDEHFGKPIASYPP 104
Query: 48  HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKYDFIA 100
             ++ DY++   +K  V  +  FNT V ++E  ED   + V + +          +D++ 
Sbjct: 105 REVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAFDYVV 164
Query: 101 VCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH 158
            C G       P + G+  F G ILH+ D++   + ++K VL+VG+  S  DI      +
Sbjct: 165 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKY 224
Query: 159 SEK----VYHSTRRGYHYYPKFIDGKP 181
             K     Y +   GY  +P+  D +P
Sbjct: 225 GAKKLISCYRTAPMGYK-WPENWDERP 250

>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78lys Mutant Length = 461

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 28/207 (13%)
Query: 2   ESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV--YPN 47
           ++D GG WN     G           +Y  L    PK   +  DY   +++  P+  YP 
Sbjct: 45  QADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSKGPKECLEFADYTFDEHFGKPIASYPP 104
Query: 48  HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKYDFIA 100
             ++ DY++   +K  V  +  FNT V ++E  ED   + V + +          +D++ 
Sbjct: 105 REVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAFDYVV 164
Query: 101 VCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH 158
            C G       P + G+  F G ILH+ D++   + ++K VL+VG+  S  DI      +
Sbjct: 165 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKY 224
Query: 159 SEK----VYHSTRRGYHYYPKFIDGKP 181
             K     Y +   GY  +P+  D +P
Sbjct: 225 GAKKLISCYRTAPMGYK-WPENWDERP 250

>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 28/207 (13%)
Query: 2   ESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV--YPN 47
           ++D GG WN     G            Y  L    PK   +  DY   +++  P+  YP 
Sbjct: 40  QADWGGQWNYTWRTGLDENGEPVHSSXYRYLWSNGPKECLEFADYTFDEHFGKPIASYPP 99
Query: 48  HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKYDFIA 100
             ++ DY++   +K  V  +  FNT V ++E  ED   + V + +        +++D++ 
Sbjct: 100 REVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVV 159
Query: 101 VCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH 158
            C G       P + G+  F G ILH+ D++   + ++K VL+VG+  S  DI      +
Sbjct: 160 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKY 219
Query: 159 SEK----VYHSTRRGYHYYPKFIDGKP 181
             K     Y +   GY  +P+  D +P
Sbjct: 220 GAKKLISCYRTAPXGYK-WPENWDERP 245

>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With Nadp: Native Data Length = 461

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 28/207 (13%)
Query: 2   ESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV--YPN 47
           ++D GG WN     G           +Y  L    PK   +  DY   +++  P+  YP 
Sbjct: 45  QADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPP 104
Query: 48  HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKYDFIA 100
             ++ DY++   +K  V  +  FNT V ++E  ED   + V + +          +D++ 
Sbjct: 105 REVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAFDYVV 164
Query: 101 VCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH 158
            C G       P + G+  F G ILH+ D++   + ++K VL+VG+  S  DI      +
Sbjct: 165 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKY 224
Query: 159 SEK----VYHSTRRGYHYYPKFIDGKP 181
             K     Y +   GY  +P+  D +P
Sbjct: 225 GAKKLISCYRTAPMGYK-WPENWDERP 250

>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78asp Mutant Length = 461

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 28/207 (13%)
Query: 2   ESDLGGVWNSQASCG----------RVYPSLHLISPKFNTQVPDYPMPDNY--PV--YPN 47
           ++D GG WN     G           +Y  L    PK   +  DY   +++  P+  YP 
Sbjct: 45  QADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSDGPKECLEFADYTFDEHFGKPIASYPP 104
Query: 48  HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGK-----KKKYDFIA 100
             ++ DY++   +K  V  +  FNT V ++E  ED   + V + +          +D++ 
Sbjct: 105 REVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAFDYVV 164
Query: 101 VCNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH 158
            C G       P + G+  F G ILH+ D++   + ++K VL+VG+  S  DI      +
Sbjct: 165 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKY 224
Query: 159 SEK----VYHSTRRGYHYYPKFIDGKP 181
             K     Y +   GY  +P+  D +P
Sbjct: 225 GAKKLISCYRTAPMGYK-WPENWDERP 250

>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase Length = 540

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 23/190 (12%)
Query: 44  VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAV 101
            Y     +L+YL     +FD+  H  F TEV +    +D  +WEV   +G+  +  ++  
Sbjct: 82  TYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVN 141
Query: 102 CNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHS 159
             G      +PN  G   F GE +H+  +     +  +RV V+G G++G  +    +   
Sbjct: 142 AVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEV 201
Query: 160 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK----QVFKLAGFDGV 215
           E +    R              TPQ+ + +GN+  + E+ +A IK    ++++ A    V
Sbjct: 202 EHLTVFVR--------------TPQYSVPVGNRPVNPEQ-IAEIKADYDRIWERAKNSAV 246
Query: 216 DYGLKKPDHP 225
            +G ++   P
Sbjct: 247 AFGFEESTLP 256

>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone Monooxygenase In The Rotated Conformation Length = 573

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 23/190 (12%)
Query: 44  VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAV 101
            Y     +L+YL     +FD+  H  F TEV +    +D  +WEV   +G+  +  ++  
Sbjct: 115 TYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVN 174
Query: 102 CNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHS 159
             G      +PN  G   F GE +H+  +     +  +RV V+G G++G  +    +   
Sbjct: 175 AVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEV 234
Query: 160 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK----QVFKLAGFDGV 215
           E +    R              TPQ+ + +GN+  + E+ +A IK    ++++ A    V
Sbjct: 235 EHLTVFVR--------------TPQYSVPVGNRPVNPEQ-IAEIKADYDRIWERAKNSAV 279
Query: 216 DYGLKKPDHP 225
            +G ++   P
Sbjct: 280 AFGFEESTLP 289

>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin- Containing Monooxygenases And To Mammalian Dimethylalanine Monooxygenases Length = 457

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 44/188 (23%)
Query: 6   GGVWNSQASCGRVYPSLHLISPKFNTQ-------VPDYPMP------DNYPV-------- 44
           GGVWN  ++     P +   +P   T+       +P YP P       N P+        
Sbjct: 46  GGVWNYTSTLSNKLP-VPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELXGYCDQ 104
Query: 45  --------YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK---- 92
                   +P+   + +Y R YA+    +      T+V+++E+ +  W V     K    
Sbjct: 105 SFKPQTLQFPHRHTIQEYQRIYAQPLLPFIK--LATDVLDIEKKDGSWVVTYKGTKAGSP 162
Query: 93  --KKKYDFIAVCNGAQRVARYPN------YSGYFSGEILHSMDYKSPDQIRNKRVLVVGA 144
             K  +D +++CNG   V   PN      Y+    G +LHS  ++ P+    + VLVVG 
Sbjct: 163 ISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGG 222
Query: 145 GNSGCDIA 152
            +S  D+ 
Sbjct: 223 ASSANDLV 230

>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo) From S.Pombe And Nadph Cofactor Complex Length = 447

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 44/188 (23%)
Query: 6   GGVWNSQASCGRVYPSLHLISPKFNTQ-------VPDYPMP------DNYPV-------- 44
           GGVWN  ++     P +   +P   T+       +P YP P       N P+        
Sbjct: 44  GGVWNYTSTLSNKLP-VPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELXGYCDQ 102
Query: 45  --------YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK---- 92
                   +P+   + +Y R YA+    +      T+V+++E+ +  W V     K    
Sbjct: 103 SFKPQTLQFPHRHTIQEYQRIYAQPLLPFIK--LATDVLDIEKKDGSWVVTYKGTKAGSP 160
Query: 93  --KKKYDFIAVCNGAQRVARYPN------YSGYFSGEILHSMDYKSPDQIRNKRVLVVGA 144
             K  +D +++CNG   V   PN      Y+    G +LHS  ++ P+    + VLVVG 
Sbjct: 161 ISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGG 220
Query: 145 GNSGCDIA 152
            +S  D+ 
Sbjct: 221 ASSANDLV 228

>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Met446gly Mutant Length = 542

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
Query: 45  YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 102
           Y +   +L Y+   A KFD+ +   F+T V     ++  + W V+ ++G + +  ++ + 
Sbjct: 90  YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMA 149
Query: 103 NGAQRVARYPNYSGY--FSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHS 159
           +G   V + PN+ G   F+G + H+ ++   P     +RV V+G G+SG  ++   +  +
Sbjct: 150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQA 209
Query: 160 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS-KEET 199
            +++   +R  H+     +    P+++  L  +++  +EE+
Sbjct: 210 AELF-VFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREES 249

>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Arg337lys Mutant In Complex With Mes Length = 542

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
Query: 45  YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 102
           Y +   +L Y+   A KFD+ +   F+T V     ++  + W V+ ++G + +  ++ + 
Sbjct: 90  YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMA 149
Query: 103 NGAQRVARYPNYSGY--FSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHS 159
           +G   V + PN+ G   F+G + H+ ++   P     +RV V+G G+SG  ++   +  +
Sbjct: 150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQA 209
Query: 160 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS-KEET 199
            +++   +R  H+     +    P+++  L  +++  +EE+
Sbjct: 210 AELF-VFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREES 249

>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger Monooxygenase Length = 542

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
Query: 45  YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 102
           Y +   +L Y+   A KFD+ +   F+T V     ++  + W V+ ++G + +  ++ + 
Sbjct: 90  YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMA 149
Query: 103 NGAQRVARYPNYSGY--FSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHS 159
           +G   V + PN+ G   F+G + H+ ++   P     +RV V+G G+SG  ++   +  +
Sbjct: 150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQA 209
Query: 160 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS-KEET 199
            +++   +R  H+     +    P+++  L  +++  +EE+
Sbjct: 210 AELF-VFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREES 249

>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Asp66ala Mutant In Complex With Nadp And Mes Length = 542

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
Query: 45  YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 102
           Y +   +L Y+   A KFD+ +   F+T V     ++  + W V+ ++G + +  ++ + 
Sbjct: 90  YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMA 149
Query: 103 NGAQRVARYPNYSGY--FSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHS 159
           +G   V + PN+ G   F+G + H+ ++   P     +RV V+G G+SG  ++   +  +
Sbjct: 150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQA 209
Query: 160 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS-KEET 199
            +++   +R  H+     +    P+++  L  +++  +EE+
Sbjct: 210 AELF-VFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREES 249

>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 45  YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 102
           Y     +L YL   A +FD+     F+T V +  L++    W V    G +    F+ V 
Sbjct: 95  YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVA 154
Query: 103 NGAQRVARYPNYSGY--FSGEILHSMDYKSPD-QIRNKRVLVVGAGNSGCDIAVDASHHS 159
            G    A  P + G   F+G+I+H+  +         KRV V+G G+SG       +  +
Sbjct: 155 AGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQA 214
Query: 160 EKVYHSTRRGYHYYP 174
           E+++   R   +  P
Sbjct: 215 EQLFVFQRSANYSIP 229

>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 45  YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 102
           Y     +L YL   A +FD+     F+T V +  L++    W V    G +    F+ V 
Sbjct: 95  YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVA 154
Query: 103 NGAQRVARYPNYSGY--FSGEILHSMDYKSPD-QIRNKRVLVVGAGNSGCDIAVDASHHS 159
            G    A  P + G   F+G+I+H+  +         KRV V+G G+SG       +  +
Sbjct: 155 AGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQA 214
Query: 160 EKVYHSTRRGYHYYP 174
           E+++   R   +  P
Sbjct: 215 EQLFVFQRSANYSIP 229

>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 45  YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVC 102
           Y     +L YL   A +FD+     F+T V +  L++    W V    G +    F+ V 
Sbjct: 95  YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVA 154
Query: 103 NGAQRVARYPNYSGY--FSGEILHSMDYKSPD-QIRNKRVLVVGAGNSGCDIAVDASHHS 159
            G    A  P + G   F+G+I+H+  +         KRV V+G G+SG       +  +
Sbjct: 155 AGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQA 214
Query: 160 EKVYHSTRRGYHYYP 174
           E+++   R   +  P
Sbjct: 215 EQLFVFQRSANYSIP 229

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	396
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	1e-81
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	1e-44
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	8e-38
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	3e-07
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	8e-30
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	5e-21
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	2e-13
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	3e-13
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	4e-13
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	5e-13
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	3e-08
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	4e-07
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	8e-05
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	1e-04
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	2e-04
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	7e-04

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score =  253 bits (647), Expect = 1e-81
 Identities = 67/351 (19%), Positives = 121/351 (34%), Gaps = 39/351 (11%)

Query: 2   ESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKK 61
           E+  GG W         + SLHL SP   + +P +PMP +   YP  + +L YL  Y +K
Sbjct: 35  EASPGGAWQ------HAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLAQYEQK 88

Query: 62  FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY--FS 119
           + +         V  +  + +   V   +G++     +    G    A  P Y G   F+
Sbjct: 89  YALPVL--RPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFA 146

Query: 120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDG 179
           G  LHS  Y +P      RV ++G GNSG  I  + S  +E  + +            DG
Sbjct: 147 GIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDV-DG 205

Query: 180 KPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILY 239
           +   +   +                       +     G +    P      +M   +L 
Sbjct: 206 RVLFERATER----------------------WKAQQEGREPDLPPGGFGDIVMVPPVLD 243

Query: 240 HIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLG-IP 298
               G +         +   + + D T    D +I+ TG+      +    L    G + 
Sbjct: 244 ARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQGQVE 303

Query: 299 DLFIHIAPRNLDNIFFFGFVN----AAAGLGDGLRLQGQFIRSYIQAFIRK 345
                +    + +++  G+ +    A+A L  G+    +     + A+   
Sbjct: 304 VDGSGLRALAVPSVWLLGYGDWNGMASATLI-GVTRYAREAVRQVTAYCAD 353

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score =  158 bits (402), Expect = 1e-44
 Identities = 46/313 (14%), Positives = 95/313 (30%), Gaps = 71/313 (22%)

Query: 18  VYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINL 77
           +Y  L   +P       D         +P+   + +Y R YA+    +      T+V+++
Sbjct: 84  LYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIK--LATDVLDI 141

Query: 78  EQYEDIWEVELSNGKKKK------YDFIAVCNGAQRVARYPNYSG------YFSGEILHS 125
           E+ +  W V     K         +D +++CNG   V   PN  G         G +LHS
Sbjct: 142 EKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHS 201

Query: 126 MDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQW 185
             ++ P+    + VLVVG  +S  D+    +  ++   + +  G              + 
Sbjct: 202 SLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ--------NES 253

Query: 186 MLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGD 245
           + Q           +  I +               +  +           +++Y  G+  
Sbjct: 254 LQQ-----------VPEITKFD----------PTTREIYLKGGKVLSNIDRVIYCTGYLY 292

Query: 246 ILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIA 305
            +P             F     ++          +                + +++ HI 
Sbjct: 293 SVP-------------FPSLAKLKSPETKLIDDGSH---------------VHNVYQHIF 324

Query: 306 PRNLDNIFFFGFV 318
                 + F G  
Sbjct: 325 YIPDPTLAFVGLA 337

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score =  141 bits (356), Expect = 8e-38
 Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 23/199 (11%)

Query: 3   SDLGGVWN----------SQASCGRVYPSLHLISPKFNTQVPDYPMPDNY----PVYPNH 48
           +D GG WN           +     +Y  L    PK   +  DY   +++      YP  
Sbjct: 41  ADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPR 100

Query: 49  SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGKKKK-----YDFIAV 101
            ++ DY++   +K  V  +  FNT V ++E  ED   + V + +          +D++  
Sbjct: 101 EVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVC 160

Query: 102 CNGAQRVARYPNYSGY--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHS 159
           C G       P + G+  F G ILH+ D++   + ++K VL+VG+  S  DI      + 
Sbjct: 161 CTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYG 220

Query: 160 EKVYHSTRRGYHYYPKFID 178
            K   S  R      K+ +
Sbjct: 221 AKKLISCYRTAPMGYKWPE 239

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 3/112 (2%)

Query: 210 AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIE 269
           + +   D G +   +          +  + +    +   + ++  ++    +F D +  +
Sbjct: 205 SSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEK 264

Query: 270 VDTIIYATGYNRHFPFIDKEKLEW---KLGIPDLFIHIAPRNLDNIFFFGFV 318
           VD II  TGY  HFPF++ +       +L   +L+  +   +    F+ G  
Sbjct: 265 VDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKFFYIGMQ 316

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score =  117 bits (294), Expect = 8e-30
 Identities = 50/354 (14%), Positives = 94/354 (26%), Gaps = 71/354 (20%)

Query: 2   ESDLGGVWNSQASCGRVYP-SLHLISPKFNTQVP-----------DYPMPDNYPVYPNHS 49
           +  +G  +       + +P S   I+P F +                P       + +  
Sbjct: 36  KGTVGHSF-------KHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEHISGE 88

Query: 50  MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVA 109
              +YL+  A  +++  +   NT V N+   +  + +  +       D+I V  G     
Sbjct: 89  TYAEYLQVVANHYEL--NIFENTVVTNISADDAYYTIATTTETYH-ADYIFVATGDYNFP 145

Query: 110 RYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG 169
           + P   G      +H  + +  D     + +V+G   SG D A   + +   +   T   
Sbjct: 146 KKPFKYG------IHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTT 199

Query: 170 YHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAA 229
               P          +  Q                          +  G +   +     
Sbjct: 200 GLNDPDADPSVRLSPYTRQRLGNV---------------------IKQGARIEMNVHYTV 238

Query: 230 HPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKE 289
             I  +   YHI                        +       I ATG++     I ++
Sbjct: 239 KDIDFNNGQYHISFDS------------------GQSVHTPHEPILATGFDATKNPIVQQ 280

Query: 290 KLEWKLGIPDLFIHIAPRNLDNIFFFGFV----NAAAGLGDGLRLQGQFIRSYI 339
                     L  H       NIF  G      NA        R +   +   +
Sbjct: 281 LFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLL 334

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 93.6 bits (232), Expect = 5e-21
 Identities = 58/327 (17%), Positives = 105/327 (32%), Gaps = 46/327 (14%)

Query: 36  YPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL------- 88
               +    YP      DYLR  A  F     S +  EV+ +E      +VE        
Sbjct: 114 VDFINLGTFYPCRMEFNDYLRWVASHFQ--EQSRYGEEVLRIEPMLSAGQVEALRVISRN 171

Query: 89  SNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDY------KSPDQIRNKRVL 140
           ++G++      A+        R P         G + H   Y      +     +  ++ 
Sbjct: 172 ADGEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIA 231

Query: 141 VVGAGNSGCDIAVD--ASHHSEKVYHSTRRGYHYYP----KFIDGKPTPQWMLQLGNKFS 194
           ++G G S  +  +D   S+ S +     R      P     F++    P++   +   +S
Sbjct: 232 IIGGGQSAAEAFIDLNDSYPSVQADMILRA-SALKPADDSPFVNEVFAPKFTDLI---YS 287

Query: 195 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKN 254
            +      + + +    +  VD  L      ++  + +   Q +  I          ++ 
Sbjct: 288 REHAERERLLREYHNTNYSVVDTDL------IERIYGVFYRQKVSGIPRHAFRCMTTVER 341

Query: 255 L----NGNIVHFVD-----DTHIEVDTIIYATGYNRHFP--FID--KEKLEWKLGIPDLF 301
                 G  +   D      +    D +I ATGY R      ++   E L       D  
Sbjct: 342 ATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYLGDHEIGRDYR 401

Query: 302 IHIAPRNLDNIFFFGFVNAAAGLGDGL 328
           +    R    I+  GF  A+ GL D L
Sbjct: 402 LQTDERCKVAIYAQGFSQASHGLSDTL 428

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 70.7 bits (174), Expect = 2e-13
 Identities = 58/223 (26%), Positives = 75/223 (33%), Gaps = 58/223 (26%)

Query: 3   SDLGGVW--NSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSM---------M 51
            D+GG W  N        YP         +T+   Y       + P             M
Sbjct: 42  EDVGGTWYWNR-------YPGCR-----LDTESYAYGYFALKGIIPEWEWSENFASQPEM 89

Query: 52  LDYLRSYAKKFDVYNHSIFNTEVINLEQYED---IWEVELSNGKKKKYDFIAVCNGAQRV 108
           L Y+   A   DV  H  FNT V     Y +   +WEV L N +     F+    G    
Sbjct: 90  LRYVNRAADAMDVRKHYRFNTRVTAAR-YVENDRLWEVTLDNEEVVTCRFLISATGPLSA 148

Query: 109 ARYPNYSGY--FSGEILHS----MDYKSPDQ---IRNKRVLVVGAGNSG----CDIAVDA 155
           +R P+  G   F GE  HS     D +   +      KRV V+G G +G       A  A
Sbjct: 149 SRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETA 208

Query: 156 SHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEE 198
                 +Y   R              TP W   LGN   SKE+
Sbjct: 209 KE----LYVFQR--------------TPNWCTPLGNSPMSKEK 233

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 69.9 bits (172), Expect = 3e-13
 Identities = 49/221 (22%), Positives = 74/221 (33%), Gaps = 52/221 (23%)

Query: 3   SDLGGVW--NSQASCGRVYPSLHLISPKFNTQVPDY-----PMPDNYPV----YPNHSMM 51
           S +GGVW  N        YP         + +  DY     P  +        Y     +
Sbjct: 54  SGVGGVWYWNR-------YPGAR-----CDVESIDYSYSFSPELEQEWNWSEKYATQPEI 101

Query: 52  LDYLRSYAKKFDVYNHSIFNTEVINLE--QYEDIWEVELSNGKKKKYDFIAVCNGAQRVA 109
           L YL   A +FD+     F+T V +    +    W V    G +    F+ V  G    A
Sbjct: 102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNA 161

Query: 110 RYPNYSGY--FSGEILHSM--DYKSPDQIRNKRVLVVGAGNSGC----DIAVDASHHSEK 161
             P + G   F+G+I+H+    +   D    KRV V+G G+SG      IA  A      
Sbjct: 162 NTPAFDGLDRFTGDIVHTARWPHDGVD-FTGKRVGVIGTGSSGIQSIPIIAEQAEQ---- 216

Query: 162 VYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY 202
           ++   R              +  + +  GN           
Sbjct: 217 LFVFQR--------------SANYSIPAGNVPLDDATRAEQ 243

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 69.9 bits (172), Expect = 4e-13
 Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 48/215 (22%)

Query: 3   SDLGGVW--NSQASCGRVYPSL------HLISPKFNTQVPDYPMPDNYP-VYPNHSMMLD 53
            D+GGVW  N        YP              F+    +     N+   Y +   +L 
Sbjct: 49  GDVGGVWYWNR-------YPGARCDIESIEYCYSFS---EEVLQEWNWTERYASQPEILR 98

Query: 54  YLRSYAKKFDVYNHSIFNTEVINLE--QYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY 111
           Y+   A KFD+ +   F+T V      +  + W V+ ++G + +  ++ + +G   V + 
Sbjct: 99  YINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQL 158

Query: 112 PNYSGY--FSGEILHSM--DYKSPDQIRNKRVLVVGAGNSG----CDIAVDASHHSEKVY 163
           PN+ G   F+G + H+    ++  D    +RV V+G G+SG      IA  A+     ++
Sbjct: 159 PNFPGLKDFAGNLYHTGNWPHEPVD-FSGQRVGVIGTGSSGIQVSPQIAKQAAE----LF 213

Query: 164 HSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEE 198
              R              TP + +   N     E 
Sbjct: 214 VFQR--------------TPHFAVPARNAPLDPEF 234

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score = 69.1 bits (170), Expect = 5e-13
 Identities = 49/216 (22%), Positives = 81/216 (37%), Gaps = 51/216 (23%)

Query: 3   SDLGGVW--NSQASCGRVYPSL------HLISPKF---NTQVPDYPMPDNYPVYPNHSMM 51
              GG W  N        YP        HL    F     Q   +        Y     +
Sbjct: 42  DGPGGTWYWNR-------YPGALSDTESHLYRFSFDRDLLQESTWKT-----TYITQPEI 89

Query: 52  LDYLRSYAKKFDVYNHSIFNTEVINLE--QYEDIWEVELSNGKKKKYDFIAVCNGAQRVA 109
           L+YL     +FD+  H  F TEV +      E++WEV   +G+  +  ++    G     
Sbjct: 90  LEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAI 149

Query: 110 RYPNYSGY--FSGEILHSMDY-KSPDQIRNKRVLVVGAGNSG----CDIAVDASHHSEKV 162
            +PN  G   F GE +H+  + +    +  +RV V+G G++G      +A +  H    +
Sbjct: 150 NFPNLPGLDTFEGETIHTAAWPEGKS-LAGRRVGVIGTGSTGQQVITSLAPEVEH----L 204

Query: 163 YHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEE 198
               R              TPQ+ + +GN+  + E+
Sbjct: 205 TVFVR--------------TPQYSVPVGNRPVNPEQ 226

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 41/275 (14%), Positives = 93/275 (33%), Gaps = 71/275 (25%)

Query: 59  AKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKK--KKYDFIAVCNGAQRVARYPNYS 115
           A++++       N  V    + +D  +E   + G     +   IA   GA    + P   
Sbjct: 84  AERYNPDVV--LNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLG 141

Query: 116 G--YFSGEILHSMDY--KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH 171
              + +G  ++   Y  KS +  + KRV++VG G+S  D  V    ++  V    R    
Sbjct: 142 NIDHLTGSSVY---YAVKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRG--- 195

Query: 172 YYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHP 231
                              ++F    +T     +V +      +D               
Sbjct: 196 -------------------HEFQGHGKT---AHEVERARANGTIDV-------------- 219

Query: 232 IMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKL 291
            + +++        +L +  +++ +G+         +E D ++   G+  +   +     
Sbjct: 220 YLETEVASIEESNGVLTRVHLRSSDGSK------WTVEADRLLILIGFKSNLGPL----A 269

Query: 292 EWKLGIPDLFIHIAPR---NLDNIFFFGFVNAAAG 323
            W L + +  + +      ++D ++       AAG
Sbjct: 270 RWDLELYENALVVDSHMKTSVDGLY-------AAG 297

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 12/116 (10%)

Query: 59  AKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKK--KKYDFIAVCNGA--QRVARYPNY 114
              F+             LE+  D+++V  S G     K   IA   GA   R    P  
Sbjct: 75  VAPFNPVYS--LGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGE 132

Query: 115 SGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVY--HSTRR 168
             +    + +++  KS  + + KRVL+VG G+S  D A++    + ++   H  RR
Sbjct: 133 REFEGRGVYYAV--KSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIH--RR 184

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 59  AKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKK--KYDFIAVCNGAQRVARYPNYSG 116
             KFD          V ++E+  D     ++N +    K   I   NGA    R      
Sbjct: 77  MAKFDQTIC--LEQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGA-FKPRKLELEN 133

Query: 117 Y--FSGEILHSMDY--KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVY--HSTRR 168
              + G+ LH   Y      +   +RV ++G G+S  D A+     +++V   H  RR
Sbjct: 134 AEQYEGKNLH---YFVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIH--RR 186

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 48/396 (12%), Positives = 107/396 (27%), Gaps = 107/396 (27%)

Query: 45  YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYD-FIAVCN 103
           Y    ++  +  ++   FD  +       +++ E+ + I  +   +        F  + +
Sbjct: 16  YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI--IMSKDAVSGTLRLFWTLLS 73

Query: 104 -GAQRVARY------PNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDAS 156
              + V ++       NY   F    + + + + P  +                      
Sbjct: 74  KQEEMVQKFVEEVLRINYK--FLMSPIKT-EQRQPSMMT--------------------- 109

Query: 157 HHSEKVYHSTR-RGYHYYPKFIDGK-PTPQWMLQLGNKFSSKEETMAYI---------KQ 205
               ++Y   R R Y+    F        Q  L+L      +      +         K 
Sbjct: 110 ----RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LELRPAKNVLIDGVLGSGKT 164

Query: 206 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILY-HIGHGDILPKDDIKNLNGNIVHFVD 264
              +A    + Y ++            M+ +I + ++ + +  P+  ++ L   +++ +D
Sbjct: 165 W--VALDVCLSYKVQC----------KMDFKIFWLNLKNCNS-PETVLEMLQ-KLLYQID 210

Query: 265 DTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRN----LDNI-------- 312
                            H           +  +  L       N    L N+        
Sbjct: 211 PNWTSRSDHSSNIKLRIH---------SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 313 FFFG----FVNAAAGLGDGLRLQGQFIRSYIQAFI----RKSKGYL-KFLNAKKNDNPDL 363
           F              + D L        S     +     + K  L K+L+ +  D P  
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 364 GQDY----------FIDSHRHLWEVDFWKFIKCARM 389
                          I      W  D WK + C ++
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATW--DNWKHVNCDKL 355

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 43.2 bits (103), Expect = 8e-05
 Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 41/146 (28%)

Query: 40  DNYPVYPNHS---MMLDYLRSYAKKFDV-YNHSIFNTEVINLEQYEDIWEVELSNGKKKK 95
           +NY   P      +    L+ +  ++DV    S   +++I       + ++E ++G   K
Sbjct: 45  ENYISVPKTEGQKLAGA-LKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLK 103

Query: 96  YDFIAVCNGAQRVARYPN------YSG------------YFSGEILHSMDYKSPDQIRNK 137
              I V  GA+   R  N      Y               F                + K
Sbjct: 104 ARSIIVATGAK--WRNMNVPGEDQYRTKGVTYCPHCDGPLF----------------KGK 145

Query: 138 RVLVVGAGNSGCDIAVDASHHSEKVY 163
           RV V+G GNSG + A+D +   E V 
Sbjct: 146 RVAVIGGGNSGVEAAIDLAGIVEHVT 171

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 38/233 (16%), Positives = 71/233 (30%), Gaps = 37/233 (15%)

Query: 51  MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVAR 110
            L Y R   +   V      N  V      + +          + +D   + +G   V R
Sbjct: 427 TLRYYRRMIEVTGVTLK--LNHTV----TADQL----------QAFDETILASGI--VPR 468

Query: 111 YPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY 170
            P   G    ++L  +D          +V ++G G  G D A+  S   E    +     
Sbjct: 469 TPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNI---- 524

Query: 171 HYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAH 230
                F +       + Q G       +     +Q+  L           KP   L    
Sbjct: 525 ---AGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKAS------KPGQGLGKTT 575

Query: 231 PIMNSQILYHIGHG-DILPKDDIKNLNGNIVHFVDDTH---IEVDTIIYATGY 279
             ++   L     G  ++P    + ++ + +H V +     + VD ++   G 
Sbjct: 576 GWIHRTTLLS--RGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQ 626

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 39/158 (24%)

Query: 32  QVPDYPMPDNYPVYPNHS--MMLDYLRSYAKKFDV-YNHSIFNTEVINLEQYEDIWEVEL 88
           QV D    +NY   P      +   L+++   +DV    S   ++++       + ++E 
Sbjct: 248 QVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIET 307

Query: 89  SNGKKKKYDFIAVCNGAQRVARYPN------YSGY------------FSGEILHSMDYKS 130
           ++G   K   I +  GA+   R  N      Y               F            
Sbjct: 308 ASGAVLKARSIIIATGAK--WRNMNVPGEDQYRTKGVTYCPHCDGPLF------------ 353

Query: 131 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168
               + KRV V+G GNSG + A+D +   E V      
Sbjct: 354 ----KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA 387

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333

 Score = 40.2 bits (95), Expect = 7e-04
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 41/152 (26%)

Query: 40  DNYPVYPNHSM---MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN------ 90
           +N+P +P   +   + D  R  +++F         T +      E + +V+ S+      
Sbjct: 58  ENFPGFPEGILGVELTDKFRKQSERF--------GTTIF----TETVTKVDFSSKPFKLF 105

Query: 91  GKKKKY--DFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKS------------PDQIRN 136
              K    D + +  GA   A+  +    F G       + +                RN
Sbjct: 106 TDSKAILADAVILAIGAV--AKRLS----FVGSGEVLGGFWNRGISACAVCDGAAPIFRN 159

Query: 137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR 168
           K + V+G G+S  + A   + +  KVY   RR
Sbjct: 160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR 191

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	396
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	100.0
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	100.0
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	100.0
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	100.0
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	100.0
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	100.0
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	100.0
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.97
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.96
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.96
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.95
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.95
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.95
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.95
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.95
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.94
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.94
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.94
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.93
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.93
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.93
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.93
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.92
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.92
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.92
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.9
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.9
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.9
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.89
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.89
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.89
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.89
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.89
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.89
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.89
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.89
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.89
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.89
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.89
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.89
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.88
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.87
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.87
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.87
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.87
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.87
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.87
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.87
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.87
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.87
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.87
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.86
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.86
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.86
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.86
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.86
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.86
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.86
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.86
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.85
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.85
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.85
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.84
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.84
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.84
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.84
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.84
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.84
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.84
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.84
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.84
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.83
4dna_A	463	Probable glutathione reductase; structural genomic	99.83
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.83
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.82
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.82
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.81
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.81
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.81
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.8
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.8
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.78
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.75
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.74
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.73
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.72
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.7
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.68
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.68
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.66
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.66
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.59
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.57
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.46
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.07
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.45
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.14
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.13
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.97
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.93
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.9
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.86
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.84
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.79
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.75
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.74
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.7
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.69
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.68
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.6
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.52
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.51
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.48
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.46
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.46
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.46
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.46
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.44
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.43
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.41
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.4
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.38
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	97.37
4fk1_A	304	Putative thioredoxin reductase; structural genomic	97.37
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.35
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	97.35
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.33
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.31
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.23
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.22
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.22
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.2
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.2
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.2
2bry_A	497	NEDD9 interacting protein with calponin homology a	97.19
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.13
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	97.11
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.11
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.08
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.08
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.03
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.02
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.98
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	96.97
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	96.97
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	96.97
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	96.95
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	96.92
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.92
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	96.89
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	96.87
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.86
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	96.84
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.81
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	96.79
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.77
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	96.77
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	96.77
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	96.76
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	96.74
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	96.74
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	96.72
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	96.7
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.68
3dme_A	369	Conserved exported protein; structural genomics, P	96.67
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	96.67
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	96.63
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.62
2cul_A	232	Glucose-inhibited division protein A-related PROT	96.59
4hb9_A	412	Similarities with probable monooxygenase; flavin,	96.53
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.51
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	96.49
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	96.49
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	96.47
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.39
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	96.38
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	96.36
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.34
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	96.34
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	96.34
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	96.31
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	96.3
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	96.3
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	96.23
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	96.23
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	96.2
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	96.19
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	96.18
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	96.16
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	96.15
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	96.13
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	96.11
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	96.09
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	96.08
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.08
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	96.07
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	96.03
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	96.02
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	96.01
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	95.97
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	95.96
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	95.91
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	95.9
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	95.89
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	95.88
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	95.82
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.79
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	95.79
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	95.76
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	95.76
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	95.72
2bry_A	497	NEDD9 interacting protein with calponin homology a	95.71
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.7
3atr_A	453	Conserved archaeal protein; saturating double bond	95.68
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	95.65
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	95.64
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	95.62
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.57
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	95.55
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	95.54
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	95.54
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	95.5
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	95.47
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.46
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	95.42
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	95.38
1fec_A	490	Trypanothione reductase; redox-active center, oxid	95.37
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	95.3
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	95.28
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	95.27
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	95.25
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	95.18
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	95.14
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	95.13
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	95.12
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	95.1
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	95.1
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	95.04
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.03
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	95.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	94.99
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	94.96
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	94.92
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	94.88
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	94.87
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	94.86
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	94.85
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	94.78
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	94.78
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.75
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.73
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	94.73
4dna_A	463	Probable glutathione reductase; structural genomic	94.7
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	94.69
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	94.67
1ojt_A	482	Surface protein; redox-active center, glycolysis,	94.59
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	94.57
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	94.57
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	94.55
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	94.42
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	94.38
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	94.31
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	94.2
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.17
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	94.12
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	94.09
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	94.01
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	93.95
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	93.93
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	93.92
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	93.91
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	93.85
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	93.83
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	93.71
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	93.59
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	93.58
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	93.54
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	93.48
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	93.43
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	93.42
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	93.32
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	93.16
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	93.11
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	92.99
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	92.88
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	92.78
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	92.75
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	92.45
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	92.44
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	92.32
3dme_A	369	Conserved exported protein; structural genomics, P	92.15
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	92.12
1id1_A	153	Putative potassium channel protein; RCK domain, E.	92.11
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	91.98
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	91.94
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	91.89
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	91.77
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	91.77
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	91.68
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	91.68
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	91.67
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	91.6
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	91.59
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	91.57
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	91.41
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	91.4
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	91.37
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	91.36
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	91.28
4hb9_A	412	Similarities with probable monooxygenase; flavin,	91.27
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	91.27
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	91.23
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	91.18
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	91.17
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	91.16
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	91.14
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	91.12
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	91.03
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	90.92
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	90.67
3atr_A	453	Conserved archaeal protein; saturating double bond	90.66
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	90.64
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	90.6
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	90.4
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	90.39
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	90.38
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	90.27
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	90.23
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	90.19
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	90.16
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	90.13
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	90.0
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	89.96
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	89.93
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	89.92
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	89.87
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	89.86
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	89.84
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	89.79
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	89.78
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	89.74
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	89.74
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	89.73
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	89.64
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	89.61
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	89.56
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	89.56
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	89.53
3c85_A	183	Putative glutathione-regulated potassium-efflux S	89.51
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	89.49
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	89.46
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	89.34
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	89.24
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	89.19
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	89.07
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	89.02
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	89.01
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	88.96
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	88.89
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	88.83
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	88.78
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	88.72
3l07_A	285	Bifunctional protein fold; structural genomics, ID	88.57
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	88.54
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	88.49
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	88.26
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	88.26
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	88.22
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	88.22
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	88.18
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	88.11
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	88.04
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	88.02
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	88.02
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	88.01
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	88.0
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	87.95
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	87.85
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	87.76
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	87.55
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	87.5
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	87.45
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	87.32
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	87.28
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	87.27
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	87.26
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	87.19
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	87.11
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	86.98
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	86.91
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	86.77
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	86.72
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	86.64
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	86.6
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	86.33
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	86.31
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	86.19
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	86.13
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	86.11
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	86.04
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	85.92
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	85.84
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	85.83
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	85.67
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	85.66
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	85.55
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	85.5
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	85.36
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	85.32
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	85.3
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	85.17
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	85.17
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	85.16
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	84.87
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	84.53
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	84.46
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	84.44
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	84.39
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	84.25
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	84.16
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	84.05
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	83.95
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	83.91
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	83.89
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	83.55
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	83.47
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	83.43
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	83.42
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	83.39
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	83.33
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	83.29
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	83.16
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	83.13
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	83.04
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	82.99
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	82.91
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	82.83
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	82.68
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	82.61
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	82.52
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	82.46
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	82.29
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	82.22
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	82.18
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	82.13
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	82.11
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	82.05
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	81.82
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	81.77
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	81.73
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	81.65
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	81.56
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	81.56
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	81.5
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	81.45
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	81.43
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	81.4
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	81.33
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	81.28
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	81.21
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	81.17
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	81.14
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	81.13
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	81.08
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	81.06
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	81.02
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	80.96
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	80.89
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	80.88
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	80.87
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	80.78
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	80.73
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	80.71
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	80.62
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	80.62
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	80.61
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	80.52
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	80.5
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	80.35
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	80.33
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	80.31
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	80.29
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	80.15
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	80.1

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=100.00  E-value=5.8e-50  Score=393.82  Aligned_cols=321  Identities=22%  Similarity=0.354  Sum_probs=267.4

Q ss_pred             CCCCccccccCCCC----------CCCCCCceeeecCCCccccCCCCCCCCC----CCCCChHHHHHHHHHHHHHcCCCC
Q psy2343           1 MESDLGGVWNSQAS----------CGRVYPSLHLISPKFNTQVPDYPMPDNY----PVYPNHSMMLDYLRSYAKKFDVYN   66 (396)
Q Consensus         1 ~~~~iGG~W~~~~~----------~~~~y~~~~~~~~~~~~~~~~~p~p~~~----~~~p~~~~~~~Yl~~~~~~~~l~~   66 (396)
                      |++.+||+|.+...          .+++|+++.+|.++.++.|++||+|...    +.|+++.++.+|++++++++++.+
T Consensus        39 ~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~  118 (464)
T 2xve_A           39 KQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRK  118 (464)
T ss_dssp             SSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGG
T ss_pred             cCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcc
Confidence            45789999998532          3679999999999999999999987543    789999999999999999999988


Q ss_pred             ceEeCcEEEEEEEeCC--eEEEEEcc---C--cEEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCCCCCCCC
Q psy2343          67 HSIFNTEVINLEQYED--IWEVELSN---G--KKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNK  137 (396)
Q Consensus        67 ~i~~~t~V~~v~~~~~--~~~V~~~~---g--~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~~~~~~k  137 (396)
                      +|+|+++|++|++.++  .|+|++.+   |  .++.||+||+|||+++.|++|.+||  .|.|.++|+++|++...+.+|
T Consensus       119 ~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k  198 (464)
T 2xve_A          119 YIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDK  198 (464)
T ss_dssp             GEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTS
T ss_pred             eEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECCCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCC
Confidence            8999999999998754  89999865   3  4589999999999888999999999  688999999999998888999


Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDY  217 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (396)
                      +|+|||+|.||+|+|.+|++.+++|+++.|++... +.                .                         
T Consensus       199 ~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~-~~----------------~-------------------------  236 (464)
T 2xve_A          199 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPM-GY----------------K-------------------------  236 (464)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCC-CC----------------C-------------------------
T ss_pred             EEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCC-CC----------------C-------------------------
Confidence            99999999999999999999999999999876210 00                0                         


Q ss_pred             CCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCc-ccccccCC
Q psy2343         218 GLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDK-EKLEWKLG  296 (396)
Q Consensus       218 ~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~-~~~~~~~~  296 (396)
                       +                       ..+|++.+.|+++++++|+|+||+++++|.||+||||+++++||+. ..+..+++
T Consensus       237 -~-----------------------~~~V~~~~~V~~i~~~~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~  292 (464)
T 2xve_A          237 -W-----------------------PENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNR  292 (464)
T ss_dssp             -C-----------------------CTTEEECSCEEEECSSEEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSS
T ss_pred             -C-----------------------CCceEEcCCeEEEeCCEEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCC
Confidence             0                       1256767889999999999999999999999999999999999986 34555544


Q ss_pred             -cc-ccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccccCCCchhhHHHHhhcCCC-ccCCCccccCCC
Q psy2343         297 -IP-DLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNP-DLGQDYFIDSHR  373 (396)
Q Consensus       297 -~~-~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~lp~~~~~~~~m~~~~~~-~~~~~~~~~~~~  373 (396)
                       .+ .+|++++.++.|+|||+||+.. +..++.++.||+|+|++|.|..+||+.    ++|++++++ ......|....|
T Consensus       293 ~~v~~~~~~~~~t~~p~i~aiGd~~~-~~~~~~a~~qa~~~a~~l~G~~~lP~~----~~m~~~~~~~~~~~~~~~~~~~  367 (464)
T 2xve_A          293 LWPLNLYKGVVWEDNPKFFYIGMQDQ-WYSFNMFDAQAWYARDVIMGRLPLPSK----EEMKADSMAWREKELTLVTAEE  367 (464)
T ss_dssp             SCCSSEETTTEESSSTTEEECSCSCC-SSCHHHHHHHHHHHHHHHTTSSCCCCH----HHHHHHHHHHHHHHHTCCSHHH
T ss_pred             cccccccceEecCCCCCEEEEeCccc-ccchHHHHHHHHHHHHHHcCCCCCcCH----HHHHHHHHHHHHHhhccCCCCC
Confidence             44 7899999999999999999865 467899999999999999999999997    899877543 111112322233


Q ss_pred             ceeeeeHHHHHHHHHHhcccc
Q psy2343         374 HLWEVDFWKFIKCARMYRDML  394 (396)
Q Consensus       374 ~~~~~~~~~y~~~l~~~~g~~  394 (396)
                      +...  +..|+|+|++++|+.
T Consensus       368 ~~~~--~~~Y~~~l~~~~g~~  386 (464)
T 2xve_A          368 MYTY--QGDYIQNLIDMTDYP  386 (464)
T ss_dssp             HHHH--HHHHHHHHHTTSSSC
T ss_pred             cccc--HHHHHHHHHHHcCCC
Confidence            3211  468999999999985

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=100.00  E-value=5.7e-47  Score=371.50  Aligned_cols=314  Identities=21%  Similarity=0.316  Sum_probs=264.4

Q ss_pred             CCCCccccccCCCC----------------------------CCCCCCceeeecCCCccccCCCCCCCCCCCCCChHHHH
Q psy2343           1 MESDLGGVWNSQAS----------------------------CGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMML   52 (396)
Q Consensus         1 ~~~~iGG~W~~~~~----------------------------~~~~y~~~~~~~~~~~~~~~~~p~p~~~~~~p~~~~~~   52 (396)
                      |++.+||+|.+...                            .+++|+.++.|.++.++.|+++|+|...+.|+++.++.
T Consensus        39 ~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  118 (447)
T 2gv8_A           39 RRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQ  118 (447)
T ss_dssp             SSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHH
T ss_pred             cCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCchhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHH
Confidence            45689999988641                            26789999999999999999999999989999999999


Q ss_pred             HHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc---Cc---EEEcCEEEEcccCCCCCCCCCCCC--C----ccc
Q psy2343          53 DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---GK---KKKYDFIAVCNGAQRVARYPNYSG--Y----FSG  120 (396)
Q Consensus        53 ~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~---g~---~~~~d~vvvAtG~~~~p~~P~~~g--~----~~g  120 (396)
                      +|+++++++++.  .|+|+++|++|++.++.|+|++.+   |+   ++.||+||+|||+++.|++|.+||  .    +.|
T Consensus       119 ~~l~~~~~~~~~--~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g  196 (447)
T 2gv8_A          119 EYQRIYAQPLLP--FIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPG  196 (447)
T ss_dssp             HHHHHHHGGGGG--GEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTT
T ss_pred             HHHHHHHHHhhC--eEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCc
Confidence            999999999865  499999999999988899999876   66   689999999999999999999999  3    367


Q ss_pred             ceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCc-EEEEeccCceeecCCCCCCChhHHHHhhCccccChHHH
Q psy2343         121 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEET  199 (396)
Q Consensus       121 ~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~-V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~  199 (396)
                      .++|+.+|+++..+++|+|+|||+|.||+|+|.+|++.+++ |+++.|++.+                            
T Consensus       197 ~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~----------------------------  248 (447)
T 2gv8_A          197 SVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD----------------------------  248 (447)
T ss_dssp             SEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS----------------------------
T ss_pred             cEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc----------------------------
Confidence            89999999999889999999999999999999999999998 9999997621                            


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceE--eCCeEEecCCcE-ecCcEEEEc
Q psy2343         200 MAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNL--NGNIVHFVDDTH-IEVDTIIYA  276 (396)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i--~~~~v~~~dG~~-~~~D~VI~a  276 (396)
                                                               +...+|...+.|+++  ++.+|+|.||+. +++|.||+|
T Consensus       249 -----------------------------------------l~~~~i~~~~~v~~~~~~~~~v~~~dG~~~~~~D~vi~a  287 (447)
T 2gv8_A          249 -----------------------------------------IQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYC  287 (447)
T ss_dssp             -----------------------------------------CBCSSEEEECCEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred             -----------------------------------------CCCCCeEEecCeEEEecCCCEEEECCCCEeccCCEEEEC
Confidence                                                     122356667788888  456899999987 799999999


Q ss_pred             cCCCCCCCC-----CCcc--cccccCCc-cccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccccCCCc
Q psy2343         277 TGYNRHFPF-----IDKE--KLEWKLGI-PDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKG  348 (396)
Q Consensus       277 TG~~~~~~~-----l~~~--~~~~~~~~-~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~lp~~  348 (396)
                      |||+++++|     |+..  .+..++.. ..+|++++.++.|+|||+|++... ..++.++.||+|+|++|.|..+||+.
T Consensus       288 tG~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~-~~~~~a~~qa~~~a~~~~g~~~lp~~  366 (447)
T 2gv8_A          288 TGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHV-VPFPTSQAQAAFLARVWSGRLKLPSK  366 (447)
T ss_dssp             CCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSS-CHHHHHHHHHHHHHHHHTTSSCCCCH
T ss_pred             CCCCcCCCCCcccccccccCceecCCCcccccccccccCCCCcEEEEeccccc-cCchHHHHHHHHHHHHHcCCCCCcCH
Confidence            999999999     8753  23333332 468999999999999999999765 47899999999999999999999997


Q ss_pred             hhhHHHHhhcCCCc----cCCCccccCCCceee-eeHHHHHHHHHHhcccc
Q psy2343         349 YLKFLNAKKNDNPD----LGQDYFIDSHRHLWE-VDFWKFIKCARMYRDML  394 (396)
Q Consensus       349 ~~~~~~m~~~~~~~----~~~~~~~~~~~~~~~-~~~~~y~~~l~~~~g~~  394 (396)
                          ++|+++++++    ...++    ..|.+. .++..|+|+|++++|..
T Consensus       367 ----~~m~~~~~~~~~~~~~~~~----~~~~~~~~~~~~y~~~l~~~~~~~  409 (447)
T 2gv8_A          367 ----EEQLKWQDELMFSLSGANN----MYHSLDYPKDATYINKLHDWCKQA  409 (447)
T ss_dssp             ----HHHHHHHHHHHHHHTTCGG----GTTBCTTTHHHHHHHHHHHHHHTC
T ss_pred             ----HHHHHHHHHHHHHhcCCCc----ceeecCCccHHHHHHHHHHHhCcc
Confidence                9999986541    12211    115554 57889999999999875

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=100.00  E-value=1.9e-41  Score=338.06  Aligned_cols=336  Identities=20%  Similarity=0.289  Sum_probs=269.9

Q ss_pred             CCCCccccccCCCCCCCCCCceeeecCCCccccCCCC----CCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEE
Q psy2343           1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYP----MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN   76 (396)
Q Consensus         1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~~p----~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~   76 (396)
                      |++.+||+|..+     .|+++.+++++..+.|+.-+    .+.+...|+++.++.+|++++++++++..+|+++++|++
T Consensus        40 ~~~~~GGtw~~~-----~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~  114 (540)
T 3gwf_A           40 KADGPGGTWYWN-----RYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTS  114 (540)
T ss_dssp             SSSSSCTHHHHC-----CCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEE
T ss_pred             CCCCCCCccccc-----CCCCceecCCcceeeeccccccccCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEE
Confidence            467899999987     59999999999988887431    124445688899999999999999999778999999999


Q ss_pred             EEEeC--CeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHH
Q psy2343          77 LEQYE--DIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIA  152 (396)
Q Consensus        77 v~~~~--~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a  152 (396)
                      ++.++  +.|+|++++|+++.||+||+|||.++.|+.|++||  .|.|..+|+..+.....+++|+|+|||+|.||+|+|
T Consensus       115 i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a  194 (540)
T 3gwf_A          115 ALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVI  194 (540)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCSEEEEGGGCCSSCCCTTSEEEEECCSHHHHHHH
T ss_pred             EEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCCCEEEeecCCCccccccceEEEECCCchHHHHH
Confidence            99874  48999999998899999999999888999999999  799999999999988889999999999999999999


Q ss_pred             HHHhcCCCcEEEEeccCceeecCCCCCCChhH--HHH-hhCcc-------------------------------------
Q psy2343         153 VDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQ--WML-QLGNK-------------------------------------  192 (396)
Q Consensus       153 ~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~--~~~-~~p~~-------------------------------------  192 (396)
                      .+|++.+++|+++.|++.|++|..........  .+. .+|..                                     
T Consensus       195 ~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~  274 (540)
T 3gwf_A          195 TSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWD  274 (540)
T ss_dssp             HHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHh
Confidence            99999999999999999999998765444321  111 11110                                     


Q ss_pred             ---------------ccCh---HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec----C
Q psy2343         193 ---------------FSSK---EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK----D  250 (396)
Q Consensus       193 ---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~----~  250 (396)
                                     +..+   .....+.+..++....+++....+.|. .++++++++++++++.+++++|++.    .
T Consensus       275 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P~-~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~  353 (540)
T 3gwf_A          275 HGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPK-GLFAKRPLCDSGYYEVYNRPNVEAVAIKEN  353 (540)
T ss_dssp             HCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCCC-SCCCSSCEEESSTGGGGGSTTEEEEETTTS
T ss_pred             cccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCC-CCCccccCCCccHHHHhcCCCEEEEeCCCC
Confidence                           0000   001112222333344555555556788 9999999999999999999999976    6


Q ss_pred             CcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCc------ccc----cccCCccccccccccCCCCcEEEE-eccc
Q psy2343         251 DIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDK------EKL----EWKLGIPDLFIHIAPRNLDNIFFF-GFVN  319 (396)
Q Consensus       251 ~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~------~~~----~~~~~~~~l~~~~~~~~~p~l~~i-G~~~  319 (396)
                      .|++|++++|+++||+.+++|+||+||||+++..++..      .+.    .|. +++..|..+..+++||+|++ |...
T Consensus       354 ~I~~it~~gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~g~~G~~l~~~w~-~~~~~y~g~~v~gfPN~f~~~Gp~~  432 (540)
T 3gwf_A          354 PIREVTAKGVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGLHINDHWD-GQPTSYLGVSTANFPNWFMVLGPNG  432 (540)
T ss_dssp             CEEEECSSEEEETTCCEEECSEEEECCCBSCSSHHHHTSEEECGGGCBHHHHTS-SSCCCBTTTBCTTCTTEEESSCSSC
T ss_pred             CccEEecCeEEcCCCCEEECCEEEECCccCccccCcCcceEECCCCcCHHHhhc-cChhhccccccCCCCceEEEecCCC
Confidence            89999999999999999999999999999988644332      222    233 46789999999999999999 6544


Q ss_pred             CcCchhhHHHHHHHHHHHHHhccc
Q psy2343         320 AAAGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       320 ~~~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      +.++.+..+|.|++|+++.|....
T Consensus       433 ~~~s~~~~~e~q~~~i~~~i~~~~  456 (540)
T 3gwf_A          433 PFTNLPPSIETQVEWISDTIGYAE  456 (540)
T ss_dssp             BCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHH
Confidence            456778899999999999886443

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=100.00  E-value=3.7e-40  Score=329.20  Aligned_cols=335  Identities=22%  Similarity=0.325  Sum_probs=263.7

Q ss_pred             CCCCccccccCCCCCCCCCCceeeecCCCccccCCCCC----CCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEE
Q psy2343           1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPM----PDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN   76 (396)
Q Consensus         1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~~p~----p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~   76 (396)
                      |++.+||+|..+     +|+++.++++...++|+..|.    +.+...|+++.++.+|++++++++++..+|+|+++|++
T Consensus        40 ~~~~~GGtw~~~-----~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~  114 (545)
T 3uox_A           40 AGEDVGGTWYWN-----RYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTA  114 (545)
T ss_dssp             SSSSSCTHHHHC-----CCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEE
T ss_pred             CCCCCCCccccC-----CCCceeecCchhhcccccCcccccCCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEE
Confidence            467899999987     799999999988888875443    24445688999999999999999999888999999999


Q ss_pred             EEEe--CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCC-------CCCCCCeEEEEcCC
Q psy2343          77 LEQY--EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSP-------DQIRNKRVLVVGAG  145 (396)
Q Consensus        77 v~~~--~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~-------~~~~~k~VvVVG~G  145 (396)
                      ++.+  ++.|+|++++|+++.||+||+|||.++.|+.|++||  .|.|..+|+..+...       .++++|+|+|||+|
T Consensus       115 ~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G  194 (545)
T 3uox_A          115 ARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTG  194 (545)
T ss_dssp             EEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCS
T ss_pred             EEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCeEEcccccccccccccccccCCCeEEEECCC
Confidence            9987  468999999998899999999999877999999999  799999999998876       67899999999999


Q ss_pred             CcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHH--H-HhhCccc-----------------------------
Q psy2343         146 NSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQW--M-LQLGNKF-----------------------------  193 (396)
Q Consensus       146 ~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~--~-~~~p~~~-----------------------------  193 (396)
                      .||+|+|.+|++.+++|+++.|++.|++|...........  + ..+|..+                             
T Consensus       195 ~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~  274 (545)
T 3uox_A          195 ATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDA  274 (545)
T ss_dssp             HHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHHHHTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHH
T ss_pred             ccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHHHhhhHHHHHHHhhcccccccccccchhhhCCHHHHHH
Confidence            9999999999999999999999999999987544332211  1 0111100                             


Q ss_pred             ----------------------cCh---HHHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCcccCccCchhhhcccCCCeE
Q psy2343         194 ----------------------SSK---EETMAYIKQVFKLAGFDGVDYGLKKP-DHPLDAAHPIMNSQILYHIGHGDIL  247 (396)
Q Consensus       194 ----------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~i~~g~i~  247 (396)
                                            ..+   .....+.+..++....+++....+.| .+.++++++++++++++.+++++|+
T Consensus       275 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~  354 (545)
T 3uox_A          275 FFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDPVVAEKLIPKDHPFGAKRVPMETNYYETYNRDNVH  354 (545)
T ss_dssp             HHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHHTSCSSSCTTSSCCCEESSHHHHTTSTTEE
T ss_pred             HHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCCCCCccCCCccHHHHhcCCCEE
Confidence                                  000   00111222222333344444445678 6999999999999999999999999


Q ss_pred             ec----CCcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCcc------cc----cccCCccccccccccCCCCcEE
Q psy2343         248 PK----DDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKE------KL----EWKLGIPDLFIHIAPRNLDNIF  313 (396)
Q Consensus       248 ~~----~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~------~~----~~~~~~~~l~~~~~~~~~p~l~  313 (396)
                      +.    ..|++|++++|.+.|| .+++|+||+||||++...++...      +.    .|. +++..|..+..+++||+|
T Consensus       355 lv~~~~~~I~~it~~gv~~~dG-~~~~D~IV~ATGf~~~~~~~~~~~i~g~~G~~l~~~w~-~~~~~y~g~~~~gfPN~f  432 (545)
T 3uox_A          355 LVDIREAPIQEVTPEGIKTADA-AYDLDVIIYATGFDAVTGSLDRIDIRGKDNVRLIDAWA-EGPSTYLGLQARGFPNFF  432 (545)
T ss_dssp             EEETTTSCEEEEETTEEEESSC-EEECSEEEECCCCBSSSCSCTTSEEECGGGCBHHHHTT-TSCCCBTTTBCTTCTTEE
T ss_pred             EEecCCCCceEEccCeEEeCCC-eeecCEEEECCccccccccCCCceEECCCCccHHHhhc-cccceeeccccCCCCcEE
Confidence            76    6899999999999999 99999999999999865554322      21    133 357889999999999999


Q ss_pred             EEecccC---cCchhhHHHHHHHHHHHHHhcc
Q psy2343         314 FFGFVNA---AAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       314 ~iG~~~~---~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      ++..+++   .++....+|.|++|+++.|...
T Consensus       433 ~~~gp~~~~~~~s~~~~~e~~~~~i~~~i~~~  464 (545)
T 3uox_A          433 TLVGPHNGSTFCNVGVCGGLQAEWVLRMISYM  464 (545)
T ss_dssp             ECSSGGGTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCccccHHHHHHHHHHHHHHHHHHH
Confidence            9976653   2467789999999999988643

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=100.00  E-value=4.8e-40  Score=328.65  Aligned_cols=335  Identities=20%  Similarity=0.279  Sum_probs=264.2

Q ss_pred             CCCCccccccCCCCCCCCCCceeeecCCCccccCCCC----CCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEE
Q psy2343           1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYP----MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN   76 (396)
Q Consensus         1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~~p----~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~   76 (396)
                      |++.+||+|..+     .|+++.+++++..+.|+.-+    .+.+...|+++.++.+|++++++++++..+++|+++|++
T Consensus        52 ~~~~~GGtw~~~-----~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~  126 (549)
T 4ap3_A           52 AASGVGGVWYWN-----RYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTS  126 (549)
T ss_dssp             SSSSSCTHHHHC-----CCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEE
T ss_pred             CCCCCCCccccC-----CCCCceeCCCchhcccccccccccCCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEE
Confidence            467899999977     59999999999999887432    234555788999999999999999999878999999999


Q ss_pred             EEEeC--CeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCC-CCCCCCCCeEEEEcCCCcHHHH
Q psy2343          77 LEQYE--DIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDI  151 (396)
Q Consensus        77 v~~~~--~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~-~~~~~~~k~VvVVG~G~sa~d~  151 (396)
                      ++.++  +.|+|++++|+++.||+||+|||.++.|+.|++||  .|.|.++|+..+. +..++++|+|+|||+|.||+|+
T Consensus       127 i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~  206 (549)
T 4ap3_A          127 AVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQS  206 (549)
T ss_dssp             EEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHH
T ss_pred             EEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEEeccccccccccCCCEEEEECCCchHHHH
Confidence            99874  48999999998899999999999777999999999  7999999999998 6778899999999999999999


Q ss_pred             HHHHhcCCCcEEEEeccCceeecCCCCCCChhHH--HH-hhCccc-----------------------------------
Q psy2343         152 AVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQW--ML-QLGNKF-----------------------------------  193 (396)
Q Consensus       152 a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~--~~-~~p~~~-----------------------------------  193 (396)
                      |..|++.+++|+++.|++.|++|......+....  +. .+|...                                   
T Consensus       207 a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~  286 (549)
T 4ap3_A          207 IPIIAEQAEQLFVFQRSANYSIPAGNVPLDDATRAEQKANYAERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERW  286 (549)
T ss_dssp             HHHHHHHBSEEEEEESSCCCEEECC----CHHHHHHHHHTHHHHHHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHhhCCEEEEEECCCCccccCcCCCCCHHHHHHHHhccHHHHHHHHhhccccccccCccchhcCCHHHHHHHHHHHH
Confidence            9999999999999999999999987544432211  11 111100                                   


Q ss_pred             ---------------cChH---HHHHHHHHHHHHhcCCCCCCCCCCCC-CCCCcccCccCchhhhcccCCCeEec----C
Q psy2343         194 ---------------SSKE---ETMAYIKQVFKLAGFDGVDYGLKKPD-HPLDAAHPIMNSQILYHIGHGDILPK----D  250 (396)
Q Consensus       194 ---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~i~~g~i~~~----~  250 (396)
                                     .++.   ....+.+..++....+++....+.|. +.++++++++++++++.+++++|++.    .
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~  366 (549)
T 4ap3_A          287 KLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAELLTPKDHAIGAKRIVLDSGYYETYNRDNVELVDLRST  366 (549)
T ss_dssp             HHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHHHSCSSCCBTTBCCEEESSTGGGGGSTTEEEEETTTS
T ss_pred             hhcchHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCC
Confidence                           0000   00011222222233343333445787 99999999999999999999999976    5


Q ss_pred             CcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCcc------cc----cccCCccccccccccCCCCcEEEEecccC
Q psy2343         251 DIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKE------KL----EWKLGIPDLFIHIAPRNLDNIFFFGFVNA  320 (396)
Q Consensus       251 ~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~------~~----~~~~~~~~l~~~~~~~~~p~l~~iG~~~~  320 (396)
                      .|++|++++|.+.|| .+++|+||+||||+++..++...      +.    .|. +++..|..+..+++||+|++..+.+
T Consensus       367 ~I~~it~~gv~~~dG-~~~~D~iI~ATGf~~~~~~~~~~~i~g~~G~~l~~~w~-~~~~~y~g~~~~gfPN~f~~~Gp~~  444 (549)
T 4ap3_A          367 PIVGMDETGIVTTGA-HYDLDMIVLATGFDAMTGSLDKLEIVGRGGRTLKETWA-AGPRTYLGLGIDGFPNFFNLTGPGS  444 (549)
T ss_dssp             CEEEEETTEEEESSC-EEECSEEEECCCEEESSTTGGGSEEECGGGCBHHHHTT-TSCCCBTTTBCTTCTTEEETTCTTS
T ss_pred             CceEEeCCcEEeCCC-ceecCEEEECCcccccccccCceeEECCCCcCHHHhhc-cchhhccccccCCCCcEEEEeCCCC
Confidence            899999999999999 99999999999999876455432      11    133 3678999999999999999865543


Q ss_pred             ---cCchhhHHHHHHHHHHHHHhcc
Q psy2343         321 ---AAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       321 ---~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                         .++....+|.|++|+++.|...
T Consensus       445 ~~~~~s~~~~~e~~~~~i~~~i~~~  469 (549)
T 4ap3_A          445 PSVLANMVLHSELHVDWVADAIAYL  469 (549)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCccHHHHHHHHHHHHHHHHHHH
Confidence               3467889999999999988644

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=100.00  E-value=8e-39  Score=320.56  Aligned_cols=336  Identities=18%  Similarity=0.315  Sum_probs=262.1

Q ss_pred             CCCCccccccCCCCCCCCCCceeeecCCCccccCCCCC----CCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEE
Q psy2343           1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPM----PDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN   76 (396)
Q Consensus         1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~~p~----p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~   76 (396)
                      |++.+||+|..+     +|+++.++++...+.|+..|.    ..+...|+++.++.+|++++++++++..+|+|+++|++
T Consensus        47 ~~~~~GG~w~~~-----~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~  121 (542)
T 1w4x_A           47 TAGDVGGVWYWN-----RYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTA  121 (542)
T ss_dssp             SSSSSCTHHHHC-----CCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEE
T ss_pred             CCCCCCCccccc-----CCCceeecccccccccccChhhhhccCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEE
Confidence            467899999877     699999999888887774331    12334688999999999999999998888999999999


Q ss_pred             EEEeC--CeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCC-CCCCCCCCeEEEEcCCCcHHHH
Q psy2343          77 LEQYE--DIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDI  151 (396)
Q Consensus        77 v~~~~--~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~-~~~~~~~k~VvVVG~G~sa~d~  151 (396)
                      ++.++  +.|+|++++|+++.||+||+|||.++.|++|++||  .|.|.++|+..+. +..++++|+|+|||+|.||+|+
T Consensus       122 ~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~  201 (542)
T 1w4x_A          122 AAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQV  201 (542)
T ss_dssp             EEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHH
T ss_pred             EEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEECCCCCCchhccCCCEEEEECCCccHHHH
Confidence            99873  58999999998899999999999988999999999  6899999999988 5567899999999999999999


Q ss_pred             HHHHhcCCCcEEEEeccCceeecCCCCCCChhHHH---HhhCc--------c------------cc--------------
Q psy2343         152 AVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWM---LQLGN--------K------------FS--------------  194 (396)
Q Consensus       152 a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~---~~~p~--------~------------~~--------------  194 (396)
                      |..+++.+++|+++.|++.|++|+...........   ..+|.        +            +.              
T Consensus       202 a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~  281 (542)
T 1w4x_A          202 SPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYW  281 (542)
T ss_dssp             HHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHH
T ss_pred             HHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHH
Confidence            99999999999999999999888765433322110   00110        0            00              


Q ss_pred             ----------------Ch---HHHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCcccCccCchhhhcccCCCeEec----C
Q psy2343         195 ----------------SK---EETMAYIKQVFKLAGFDGVDYGLKKP-DHPLDAAHPIMNSQILYHIGHGDILPK----D  250 (396)
Q Consensus       195 ----------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~i~~g~i~~~----~  250 (396)
                                      ..   .....+.+..++....+++....+.| .+.++++++++++++++.+++++|++.    .
T Consensus       282 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~  361 (542)
T 1w4x_A          282 QEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSA  361 (542)
T ss_dssp             HHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTS
T ss_pred             hhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCC
Confidence                            00   00011222222333344444445567 689999999999999999999999974    5


Q ss_pred             CcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCcc------cc----cccCCccccccccccCCCCcEEEE-eccc
Q psy2343         251 DIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKE------KL----EWKLGIPDLFIHIAPRNLDNIFFF-GFVN  319 (396)
Q Consensus       251 ~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~------~~----~~~~~~~~l~~~~~~~~~p~l~~i-G~~~  319 (396)
                      .|+++++++|++.| +++++|+||+||||+++..++...      +.    .|. +.+..|..+..+++||+|++ |+..
T Consensus       362 ~i~~i~~~gv~~~d-~~~~~D~ii~atG~~~~~~~~~~~~i~g~~G~~l~~~w~-~~~~~y~~~~v~~~Pn~f~~~G~~~  439 (542)
T 1w4x_A          362 PIETITPRGVRTSE-REYELDSLVLATGFDALTGALFKIDIRGVGNVALKEKWA-AGPRTYLGLSTAGFPNLFFIAGPGS  439 (542)
T ss_dssp             CEEEECSSEEEESS-CEEECSEEEECCCCCCTTHHHHTSEEECGGGCBHHHHTT-TSCCCBTTTBCTTSTTEEESSCTTS
T ss_pred             CceEEcCCeEEeCC-eEEecCEEEEcCCccccccCcCceeeECCCCCCHHHhhc-CchheecccccCCCCceEEEcCCCC
Confidence            89999999999999 889999999999999865544321      11    132 34678889999999999998 8774


Q ss_pred             C--cCchhhHHHHHHHHHHHHHhccc
Q psy2343         320 A--AAGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       320 ~--~~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      +  .++....+|.|++++|++|....
T Consensus       440 ~~~~~~~~~~~e~q~~~ia~~i~~~~  465 (542)
T 1w4x_A          440 PSALSNMLVSIEQHVEWVTDHIAYMF  465 (542)
T ss_dssp             SGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHHH
Confidence            3  34566899999999999997654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=100.00  E-value=1.7e-37  Score=294.62  Aligned_cols=314  Identities=20%  Similarity=0.311  Sum_probs=250.5

Q ss_pred             CCCCccccccCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe
Q psy2343           1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY   80 (396)
Q Consensus         1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~   80 (396)
                      |++.+||.|.+.      |+++.++.+...+.+++++++.....|++++++.+|+.++++++++.  ++++++|++++++
T Consensus        34 ~~~~~gg~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~  105 (357)
T 4a9w_A           34 AEASPGGAWQHA------WHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLAQYEQKYALP--VLRPIRVQRVSHF  105 (357)
T ss_dssp             CSSSSSGGGGGS------CTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHHHHHHHTTCC--EECSCCEEEEEEE
T ss_pred             CCCCCCCcccCC------CCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEC
Confidence            457899999986      99999999999999999999988889999999999999999999998  9999999999999


Q ss_pred             CCeEE-EEEccCcEEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhc
Q psy2343          81 EDIWE-VELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASH  157 (396)
Q Consensus        81 ~~~~~-V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~  157 (396)
                      ++.|. |++.++ ++.||+||+|||.++.|++|.++|  .+.+..+|+..+.+...+++|+|+|||+|.+|+|+|..|++
T Consensus       106 ~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~  184 (357)
T 4a9w_A          106 GERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVST  184 (357)
T ss_dssp             TTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTT
T ss_pred             CCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHh
Confidence            89999 998887 699999999999888999999999  78889999999999988999999999999999999999999


Q ss_pred             CCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchh
Q psy2343         158 HSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQI  237 (396)
Q Consensus       158 ~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  237 (396)
                      .+ +|+++.|++.+++|....+....       .++..         .+.+..     ...+ .+........+.+.+.+
T Consensus       185 ~~-~v~~v~~~~~~~~~~~~~~~~~~-------~~~~~---------~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~  241 (357)
T 4a9w_A          185 VA-ETTWITQHEPAFLADDVDGRVLF-------ERATE---------RWKAQQ-----EGRE-PDLPPGGFGDIVMVPPV  241 (357)
T ss_dssp             TS-EEEEECSSCCCBCCTTCCTHHHH-------TC-------------------------------------CBCCCHHH
T ss_pred             hC-CEEEEECCCCeecchhhcCccHH-------HHHHH---------HHhccc-----cccC-CCcccccccCcccChhH
Confidence            88 59999998766666543322111       00000         000000     0000 00111112345667778


Q ss_pred             hhcccCCCeEecCCcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCcccccccCCccccccc-cccCCCCcEEEEe
Q psy2343         238 LYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIH-IAPRNLDNIFFFG  316 (396)
Q Consensus       238 ~~~i~~g~i~~~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~~p~l~~iG  316 (396)
                      ...+..|.+.....+++++.++|.+.||+++++|.||+|||++++.+|++...+..+++.+.+.+. ++.++.|+||++|
T Consensus       242 ~~~~~~g~i~~~~~v~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~G~i~vd~~~l~~t~~~~vya~G  321 (357)
T 4a9w_A          242 LDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQGQVEVDGSGLRALAVPSVWLLG  321 (357)
T ss_dssp             HHHHHTTCCCEECCCSEEETTEEECTTSCEEECSEEEECCCBCCCCGGGTTTTCBCTTSCBCBCTTSCBBSSCTTEEECS
T ss_pred             HHHHhcCceEEecCcceEeCCeeEECCCCEecCCEEEECCCcCCCCcccCcccccCCCCCccccCCcccCCCCCCeEEec
Confidence            888888888888899999999999999999999999999999999999987777655566777766 5789999999999


Q ss_pred             --cccC-cCchhhHHHHHHHHHHHHHhccccCC
Q psy2343         317 --FVNA-AAGLGDGLRLQGQFIRSYIQAFIRKS  346 (396)
Q Consensus       317 --~~~~-~~~~~~~ae~qa~~~a~~l~~~~~lp  346 (396)
                        |+.. .......+..||+.+|..+...++.|
T Consensus       322 d~d~~~~~~~~~~~A~~~g~~~a~~i~~~l~g~  354 (357)
T 4a9w_A          322 YGDWNGMASATLIGVTRYAREAVRQVTAYCADH  354 (357)
T ss_dssp             SCGGGSTTCSSTTTHHHHHHHHHHHHHHHTC--
T ss_pred             cccccccchhhhhhhHHHHHHHHHHHHHHHHhh
Confidence              5543 33456678999999999998877654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.97  E-value=1.6e-30  Score=248.09  Aligned_cols=249  Identities=16%  Similarity=0.142  Sum_probs=184.4

Q ss_pred             CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCccccee
Q psy2343          44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEIL  123 (396)
Q Consensus        44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~  123 (396)
                      .++++.++.+|++++++++++.  ++++++|++|+++++.|.|++.++. +.||+||+|||++..|.+   |+   +.++
T Consensus        83 ~~~~~~~~~~~l~~~~~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~p~i---p~---~~~~  153 (369)
T 3d1c_A           83 EHISGETYAEYLQVVANHYELN--IFENTVVTNISADDAYYTIATTTET-YHADYIFVATGDYNFPKK---PF---KYGI  153 (369)
T ss_dssp             SSCBHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECSSSEEEEESSCC-EEEEEEEECCCSTTSBCC---CS---SSCE
T ss_pred             cCCCHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEECCCeEEEEeCCCE-EEeCEEEECCCCCCccCC---CC---Ccee
Confidence            4678899999999999999987  8999999999987778999988774 899999999999655544   44   5678


Q ss_pred             ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343         124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI  203 (396)
Q Consensus       124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  203 (396)
                      |+..+.+...+++|+|+|||+|.+|+|+|..|++.+.+|+++.|++.+..|.......       +|.         .. 
T Consensus       154 ~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~-------~~~---------~~-  216 (369)
T 3d1c_A          154 HYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVR-------LSP---------YT-  216 (369)
T ss_dssp             EGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTS-------CCH---------HH-
T ss_pred             chhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcc-------CCH---------HH-
Confidence            9988888777889999999999999999999999999999999987543222110000       000         00 


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCC-CeEec--CCcceE--eCC--eEEecCCcEec-CcEEEE
Q psy2343         204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG-DILPK--DDIKNL--NGN--IVHFVDDTHIE-VDTIIY  275 (396)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g-~i~~~--~~i~~i--~~~--~v~~~dG~~~~-~D~VI~  275 (396)
                                                    ...+.+.+.+. +|++.  ..|.++  +++  .|.+.||+.+. +|.||+
T Consensus       217 ------------------------------~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~  266 (369)
T 3d1c_A          217 ------------------------------RQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPIL  266 (369)
T ss_dssp             ------------------------------HHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEE
T ss_pred             ------------------------------HHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEE
Confidence                                          11122223333 36653  467777  444  47788998764 699999


Q ss_pred             ccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcC----chhhHHHHHHHHHHHHHhccccCCCc
Q psy2343         276 ATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA----GLGDGLRLQGQFIRSYIQAFIRKSKG  348 (396)
Q Consensus       276 aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~----~~~~~ae~qa~~~a~~l~~~~~lp~~  348 (396)
                      |||++++.+++....+..+++.+.+++..+.++.|+||++||+....    +.+..++.||+++|++|.+..++|+.
T Consensus       267 a~G~~~~~~~~~~~~~~~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~~~~p~~  343 (369)
T 3d1c_A          267 ATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREGLPAK  343 (369)
T ss_dssp             CCCBCGGGSHHHHHHSCCTTSCCCBCTTSBBSSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHHTTCCCC
T ss_pred             eeccCCccchhhhhhccCCCCCEEechhhcccCCCCeEEeccccccCCeeEEEEehhhHHHHHHHHHHhcccCCCCc
Confidence            99999998666544444344557777777889999999999986531    23456889999999999999999997

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.96  E-value=6.1e-30  Score=253.42  Aligned_cols=270  Identities=16%  Similarity=0.140  Sum_probs=164.2

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC--------CeEEEEEccC-----cEEEcCEEEEccc
Q psy2343          38 MPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE--------DIWEVELSNG-----KKKKYDFIAVCNG  104 (396)
Q Consensus        38 ~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~--------~~~~V~~~~g-----~~~~~d~vvvAtG  104 (396)
                      ++.+...||++.|+.+||+++|++|+.  +|+|+++|++|++.+        +.|+|++.++     .++.+++||+|||
T Consensus       134 f~~~~~~~p~r~E~~~Yl~~~A~~~~~--~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG  211 (501)
T 4b63_A          134 FTNLSTFLPARLEFEDYMRWCAQQFSD--VVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIG  211 (501)
T ss_dssp             HHTTCCSCCBHHHHHHHHHHHHHTTGG--GEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCC
T ss_pred             CccccCCCCCHHHHHHHHHHHHHHcCC--ceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcC
Confidence            344556799999999999999999874  499999999999862        3699998764     2578999999999


Q ss_pred             CCCCCCCCCCCCCcccceeecccCCC------CCCCCCCeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCceeecCC
Q psy2343         105 AQRVARYPNYSGYFSGEILHSMDYKS------PDQIRNKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGYHYYPKF  176 (396)
Q Consensus       105 ~~~~p~~P~~~g~~~g~~~hs~~~~~------~~~~~~k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~~~~p~~  176 (396)
                      .  .|++|.++ .|.|+++|+.+|..      ...++||+|+|||+|+||+|++.+|++.  +.+|++++|++.+. |..
T Consensus       212 ~--~P~iP~~~-~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~~-p~~  287 (501)
T 4b63_A          212 G--TAKMPSGL-PQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAMR-PSD  287 (501)
T ss_dssp             C--EECCCTTS-CCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSCC-BCC
T ss_pred             C--CCCCCCCC-CCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCccc-ccc
Confidence            7  78877655 46789999999975      5578999999999999999999999874  67899999998654 443


Q ss_pred             CCCCChhHH-------HHhhCcccc---------------ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccC
Q psy2343         177 IDGKPTPQW-------MLQLGNKFS---------------SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMN  234 (396)
Q Consensus       177 ~~~~~~~~~-------~~~~p~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  234 (396)
                      ......+.+       +..+|...+               +......+.+.+.+.....+....   +.+.+......  
T Consensus       288 ~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~---~~~~l~~~~~v--  362 (501)
T 4b63_A          288 DSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQ---WQHRILPERKI--  362 (501)
T ss_dssp             CCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGG---CSSEEECSEEE--
T ss_pred             ccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccc---cceeecCCcce--
Confidence            222211110       111221111               111111222222222111111000   00111100000  


Q ss_pred             chhhhcccCCCeEecCCcceEeCCeEEecCCcEecCcEEEEccCCCCCCC-CCCccc--ccc-cCCcccccccc---c--
Q psy2343         235 SQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFP-FIDKEK--LEW-KLGIPDLFIHI---A--  305 (396)
Q Consensus       235 ~~~~~~i~~g~i~~~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~-~l~~~~--~~~-~~~~~~l~~~~---~--  305 (396)
                      .........+++++...+.+++++++.+.||+++++|+||+||||+++.| +|....  +.. ..+.+.+.++.   +  
T Consensus       363 ~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rdy~~~~~~  442 (501)
T 4b63_A          363 TRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRVEMDP  442 (501)
T ss_dssp             EEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTTSBBCCCT
T ss_pred             eeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCCcEEeecC
Confidence            01112233456666666777888899999999999999999999999875 433221  222 22344433221   1  


Q ss_pred             --cCCCCcEEEEecc
Q psy2343         306 --PRNLDNIFFFGFV  318 (396)
Q Consensus       306 --~~~~p~l~~iG~~  318 (396)
                        ....++||..|..
T Consensus       443 ~~~~~~~~i~~qg~~  457 (501)
T 4b63_A          443 SKVSSEAGIWLQGCN  457 (501)
T ss_dssp             TTBCTTCEEEECSCC
T ss_pred             CccCCCceEEecCCC
Confidence              1235779999864

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.96  E-value=2.1e-28  Score=229.74  Aligned_cols=260  Identities=16%  Similarity=0.201  Sum_probs=196.3

Q ss_pred             CCCCccccccCCCCCCCCCCceeeecCCCccccCCCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe
Q psy2343           1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY   80 (396)
Q Consensus         1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~   80 (396)
                      |++.+||.|.+.      |++..+.      .++++|       ..+.+++.+|+.++++++++.  ++++++|++++..
T Consensus        38 ~~~~~gG~~~~~------~~~~~~~------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~   96 (332)
T 3lzw_A           38 SLPQLGGQLSAL------YPEKYIY------DVAGFP-------KIRAQELINNLKEQMAKFDQT--ICLEQAVESVEKQ   96 (332)
T ss_dssp             SSSSSCHHHHHH------CTTSEEC------CSTTCS-------SEEHHHHHHHHHHHHTTSCCE--EECSCCEEEEEEC
T ss_pred             cCCCCCceehhc------CCCceEe------ccCCCC-------CCCHHHHHHHHHHHHHHhCCc--EEccCEEEEEEEC
Confidence            456789999654      5554431      122221       125789999999999999876  8899999999998


Q ss_pred             CC-eEEEEEccCcEEEcCEEEEcccCCC-CCCCCCCCC--CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHh
Q psy2343          81 ED-IWEVELSNGKKKKYDFIAVCNGAQR-VARYPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDAS  156 (396)
Q Consensus        81 ~~-~~~V~~~~g~~~~~d~vvvAtG~~~-~p~~P~~~g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~  156 (396)
                      ++ .|.|++.+++ +.||+||+|||..+ .|+.|.++|  .|.+..+|+ .+.+...+++++|+|||+|.+|+|+|..|+
T Consensus        97 ~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~  174 (332)
T 3lzw_A           97 ADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY-FVDDLQKFAGRRVAILGGGDSAVDWALMLE  174 (332)
T ss_dssp             TTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES-SCSCGGGGBTCEEEEECSSHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE-ecCCHHHcCCCEEEEECCCHhHHHHHHHHH
Confidence            55 8999998887 89999999999954 788899999  577878888 777777888999999999999999999999


Q ss_pred             cCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCch
Q psy2343         157 HHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQ  236 (396)
Q Consensus       157 ~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  236 (396)
                      +.+.+|+++.|.+.. .+       .+                 ...                                 
T Consensus       175 ~~~~~v~~~~~~~~~-~~-------~~-----------------~~~---------------------------------  196 (332)
T 3lzw_A          175 PIAKEVSIIHRRDKF-RA-------HE-----------------HSV---------------------------------  196 (332)
T ss_dssp             TTBSEEEEECSSSSC-SS-------CH-----------------HHH---------------------------------
T ss_pred             hhCCeEEEEEecCcC-Cc-------cH-----------------HHH---------------------------------
Confidence            999999999987632 00       00                 011                                 


Q ss_pred             hhhcccCCCeEec--CCcceEeCC----eEEecC-----CcEecCcEEEEccCCCCCCCCCCcccccccCCccccccccc
Q psy2343         237 ILYHIGHGDILPK--DDIKNLNGN----IVHFVD-----DTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIA  305 (396)
Q Consensus       237 ~~~~i~~g~i~~~--~~i~~i~~~----~v~~~d-----G~~~~~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~  305 (396)
                        +.+....|++.  ..+.+++++    .|.+.+     +..+++|.||+|||++++.++++...+..+++.+.+.. .+
T Consensus       197 --~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~-~~  273 (332)
T 3lzw_A          197 --ENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKS-TM  273 (332)
T ss_dssp             --HHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCT-TS
T ss_pred             --HHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCC-CC
Confidence              11111234443  356666654    377776     34689999999999999999888766666666676665 45


Q ss_pred             cCCCCcEEEEecccC---cCchhhHHHHHHHHHHHHHhcccc
Q psy2343         306 PRNLDNIFFFGFVNA---AAGLGDGLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       306 ~~~~p~l~~iG~~~~---~~~~~~~ae~qa~~~a~~l~~~~~  344 (396)
                      .++.|+||++||+..   ....+..+..||+.+|..+...+.
T Consensus       274 ~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~  315 (332)
T 3lzw_A          274 ETNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKAYMD  315 (332)
T ss_dssp             BCSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             ceecCCEEEccceecCCCCcceEeeehhhHHHHHHHHHHhhC
Confidence            678999999999963   344677888999999988876654

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.95  E-value=1.1e-27  Score=225.53  Aligned_cols=238  Identities=17%  Similarity=0.201  Sum_probs=179.5

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC-CCCCCCCCC--Cccccee
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR-VARYPNYSG--YFSGEIL  123 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~-~p~~P~~~g--~~~g~~~  123 (396)
                      +..++.+|+.++++++++.  ++++++|++|+.+++.|+|++.++.++.||+||+|||..+ .|..|+++|  .+.+..+
T Consensus        63 ~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~  140 (335)
T 2zbw_A           63 YAKDLVKGLVEQVAPFNPV--YSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGV  140 (335)
T ss_dssp             EHHHHHHHHHHHHGGGCCE--EEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTE
T ss_pred             CHHHHHHHHHHHHHHcCCE--EEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEE
Confidence            5688999999999999876  8899999999998778999998887899999999999854 578888888  4655444


Q ss_pred             ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343         124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI  203 (396)
Q Consensus       124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  203 (396)
                      |.. +++...+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.+. +.     +                   ...
T Consensus       141 ~~~-~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~-~~-----~-------------------~~~  194 (335)
T 2zbw_A          141 YYA-VKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFR-AH-----E-------------------ASV  194 (335)
T ss_dssp             ESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCC-SC-----H-------------------HHH
T ss_pred             EEe-cCchhhcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccC-cc-----H-------------------HHH
Confidence            443 445556789999999999999999999999999999999986421 00     0                   111


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecC--CcceEeCC----eEEec---CC--cEecCcE
Q psy2343         204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD--DIKNLNGN----IVHFV---DD--THIEVDT  272 (396)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~--~i~~i~~~----~v~~~---dG--~~~~~D~  272 (396)
                      +.                               +.+.+.+..|++..  .|.+++++    .|.+.   +|  +.+++|.
T Consensus       195 ~~-------------------------------l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~  243 (335)
T 2zbw_A          195 KE-------------------------------LMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDA  243 (335)
T ss_dssp             HH-------------------------------HHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSE
T ss_pred             HH-------------------------------HHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCE
Confidence            11                               11222223445432  46666543    57776   78  4689999


Q ss_pred             EEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCc---CchhhHHHHHHHHHHHHHhcccc
Q psy2343         273 IIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA---AGLGDGLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       273 VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~---~~~~~~ae~qa~~~a~~l~~~~~  344 (396)
                      ||+|||++++.++++...+..+++.+.+.. .+.++.|+||++||+...   ...+..+..||+.+|..+.+.+.
T Consensus       244 vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~  317 (335)
T 2zbw_A          244 VLILAGYITKLGPLANWGLALEKNKIKVDT-TMATSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAAYAN  317 (335)
T ss_dssp             EEECCCEEEECGGGGGSCCCEETTEEECCT-TCBCSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEeecCCCCchHhhhcceeccCCeeeeCC-CCCCCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHHHhh
Confidence            999999999988887666665556676665 456889999999998742   24667788899999998877653

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.95  E-value=4.4e-27  Score=217.20  Aligned_cols=233  Identities=13%  Similarity=0.093  Sum_probs=184.5

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccce
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEI  122 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~  122 (396)
                      ..+..++.+|+.+++++++.-  ..++++|+.++++++.|.|++.+++++.||+||+|||.  .|+.|.+||  .+.+..
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~v--~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~--~~~~~~~~g~~~~~~~~  127 (297)
T 3fbs_A           52 GKAPGEIIAEARRQIERYPTI--HWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGV--TDELPEIAGLRERWGSA  127 (297)
T ss_dssp             TCCHHHHHHHHHHHHTTCTTE--EEEESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCC--EEECCCCBTTGGGBTTT
T ss_pred             CCCHHHHHHHHHHHHHhcCCe--EEEEeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCC--CCCCCCCCCchhhcCCe
Confidence            456789999999999987321  23367999999988899999999988999999999999  788999999  566777


Q ss_pred             eecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHH
Q psy2343         123 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY  202 (396)
Q Consensus       123 ~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~  202 (396)
                      +|.+.+.+...+++|+|+|||+|.+|+|+|..|++.+ +|+++.|++..                               
T Consensus       128 ~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~-------------------------------  175 (297)
T 3fbs_A          128 VFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE-------------------------------  175 (297)
T ss_dssp             EESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC-------------------------------
T ss_pred             eEEcccCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC-------------------------------
Confidence            7777777777788999999999999999999999987 99999987520                               


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec-CCcceEeCC-eEEecCCcEecCcEEEEccCCC
Q psy2343         203 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK-DDIKNLNGN-IVHFVDDTHIEVDTIIYATGYN  280 (396)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~-~~i~~i~~~-~v~~~dG~~~~~D~VI~aTG~~  280 (396)
                                                    +...+.+.+.+..|++. ..|++++++ .|.++||+.+++|.||+|||++
T Consensus       176 ------------------------------~~~~~~~~l~~~gv~i~~~~v~~i~~~~~v~~~~g~~~~~D~vi~a~G~~  225 (297)
T 3fbs_A          176 ------------------------------PDADQHALLAARGVRVETTRIREIAGHADVVLADGRSIALAGLFTQPKLR  225 (297)
T ss_dssp             ------------------------------CCHHHHHHHHHTTCEEECSCEEEEETTEEEEETTSCEEEESEEEECCEEE
T ss_pred             ------------------------------CCHHHHHHHHHCCcEEEcceeeeeecCCeEEeCCCCEEEEEEEEEccCcc
Confidence                                          01111122222244432 467788776 8999999999999999999999


Q ss_pred             CCCCCCCcccccccC---C-ccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcccc
Q psy2343         281 RHFPFIDKEKLEWKL---G-IPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       281 ~~~~~l~~~~~~~~~---~-~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~  344 (396)
                      ++.++++...+..+.   + .+.+... +.++.|+||++||+......+..|..||+.+|..+...+.
T Consensus       226 p~~~~~~~~g~~~~~~~~G~~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~l~  292 (297)
T 3fbs_A          226 ITVDWIEKLGCAVEEGPMGSTIVTDPM-KQTTARGIFACGDVARPAGSVALAVGDGAMAGAAAHRSIL  292 (297)
T ss_dssp             CCCSCHHHHTCCEEEETTEEEECCCTT-CBCSSTTEEECSGGGCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCchhHHhcCCccccCCCCceEEeCCC-CccCCCCEEEEeecCCchHHHHHHHHhHHHHHHHHHHHHh
Confidence            998888765555432   3 4555544 5789999999999987667788999999999998876654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.95  E-value=4.3e-27  Score=219.82  Aligned_cols=233  Identities=18%  Similarity=0.201  Sum_probs=180.5

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccccee
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEIL  123 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~  123 (396)
                      .+..++.+|+.++++++++.  +++ ++|++++++++.|.|++.++.++.||+||+|||.  .|+.|.++|  .|.+..+
T Consensus        67 ~~~~~~~~~~~~~~~~~~v~--~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~--~~~~~~i~g~~~~~~~~~  141 (323)
T 3f8d_A           67 IQASDMIKVFNKHIEKYEVP--VLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGV--KRRKLGVPGEQEFAGRGI  141 (323)
T ss_dssp             EEHHHHHHHHHHHHHTTTCC--EEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCC--EECCCCCTTTTTTBTTTE
T ss_pred             CCHHHHHHHHHHHHHHcCCE--EEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCC--CCccCCCCchhhhcCCce
Confidence            35789999999999999987  777 8999999988889999988888999999999999  689999999  6667777


Q ss_pred             ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343         124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI  203 (396)
Q Consensus       124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  203 (396)
                      |...+.+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++... +                    .+    .+.
T Consensus       142 ~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~-~--------------------~~----~~~  196 (323)
T 3f8d_A          142 SYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK-A--------------------QP----IYV  196 (323)
T ss_dssp             ESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCC-S--------------------CH----HHH
T ss_pred             EEeccCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCC-c--------------------CH----HHH
Confidence            7776666667789999999999999999999999999999999876321 0                    00    111


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCC----eEEecC---Cc--EecCcE
Q psy2343         204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGN----IVHFVD---DT--HIEVDT  272 (396)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~----~v~~~d---G~--~~~~D~  272 (396)
                      +.                                  ..+...|++.  ..|.+++++    .|.+.|   |+  .+++|.
T Consensus       197 ~~----------------------------------~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~  242 (323)
T 3f8d_A          197 ET----------------------------------VKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNG  242 (323)
T ss_dssp             HH----------------------------------HHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSE
T ss_pred             HH----------------------------------HHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCE
Confidence            11                                  1122245543  346667644    477876   87  689999


Q ss_pred             EEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc---CchhhHHHHHHHHHHHHHhccc
Q psy2343         273 IIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA---AGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       273 VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~---~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      ||+|||++++.++++...+..+ ++.+.+.. .+.++.|+||++||+...   ...+..|..||+.+|..+...+
T Consensus       243 vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l  316 (323)
T 3f8d_A          243 VFIEIGFDPPTDFAKSNGIETDTNGYIKVDE-WMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYV  316 (323)
T ss_dssp             EEECCCEECCHHHHHHTTCCBCTTSSBCCCT-TCBCSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCChhHHhhcCeeecCCCcEecCC-CceecCCCEEEcceecCCCCcccceeehhhHHHHHHHHHHHHH
Confidence            9999999999888876655543 35565554 557889999999999864   4567888999999998876654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.95  E-value=8.7e-27  Score=217.01  Aligned_cols=233  Identities=14%  Similarity=0.171  Sum_probs=178.6

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccce
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEI  122 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~  122 (396)
                      ..+..++.+|+.++++++++.  +++ ++|++++.+++.|.|++.+++++.||+||+|||.  .|+.|.++|  .|.+..
T Consensus        55 ~~~~~~~~~~l~~~~~~~~v~--~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~--~~~~~~~~g~~~~~~~~  129 (311)
T 2q0l_A           55 VVSGLDFMQPWQEQCFRFGLK--HEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGG--SPKRTGIKGESEYWGKG  129 (311)
T ss_dssp             CBCHHHHHHHHHHHHHTTSCE--EEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCE--EECCCCCBTHHHHBTTT
T ss_pred             cCCHHHHHHHHHHHHHHcCCE--EEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCC--CCCCCCCCChhhccCCc
Confidence            457889999999999999876  666 7999999888889998888888999999999998  788899998  566666


Q ss_pred             eecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHH
Q psy2343         123 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY  202 (396)
Q Consensus       123 ~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~  202 (396)
                      +|+..+.+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.+..                             
T Consensus       130 ~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------------------------  180 (311)
T 2q0l_A          130 VSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRC-----------------------------  180 (311)
T ss_dssp             EESCHHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCS-----------------------------
T ss_pred             EEEeecCChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCC-----------------------------
Confidence            776655554456789999999999999999999999999999998763210                             


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc-cCCCeEec--CCcceEeCC-----eEEec---CCc--Eec
Q psy2343         203 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI-GHGDILPK--DDIKNLNGN-----IVHFV---DDT--HIE  269 (396)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i-~~g~i~~~--~~i~~i~~~-----~v~~~---dG~--~~~  269 (396)
                                                     ...+.+.+ +...|++.  ..+.+++++     .|.+.   +|+  .++
T Consensus       181 -------------------------------~~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~  229 (311)
T 2q0l_A          181 -------------------------------APITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELV  229 (311)
T ss_dssp             -------------------------------CHHHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred             -------------------------------CHHHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEe
Confidence                                           00111111 11245543  346666532     46776   676  589


Q ss_pred             CcEEEEccCCCCCCCCCCccc----cccc-CCccccccccccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhccc
Q psy2343         270 VDTIIYATGYNRHFPFIDKEK----LEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       270 ~D~VI~aTG~~~~~~~l~~~~----~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      +|.||+|||++|+.++++...    +..+ .+.+.+... +.++.|+||++||+... ...+..|..||+.+|..+...+
T Consensus       230 ~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l  308 (311)
T 2q0l_A          230 VPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFS-MKTNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVISYL  308 (311)
T ss_dssp             CSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTT-CBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCc-cccCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHHHHH
Confidence            999999999999998887653    5543 356666554 57889999999999764 3567889999999999887654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.95  E-value=1.5e-26  Score=216.92  Aligned_cols=234  Identities=13%  Similarity=0.092  Sum_probs=177.5

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe--CCe-EEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccc
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDI-WEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFS  119 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~--~~~-~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~  119 (396)
                      .++..++.+|+.++++++++.  +++ ++|++|+..  ++. |.|.+.+|+++.||+||+|||.  .|+.|.++|  .+.
T Consensus        61 ~~~~~~~~~~l~~~~~~~gv~--~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~--~~~~~~i~g~~~~~  135 (325)
T 2q7v_A           61 PIAGMELAQRMHQQAEKFGAK--VEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGA--DPRKLGIPGEDNFW  135 (325)
T ss_dssp             CBCHHHHHHHHHHHHHHTTCE--EEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCE--EECCCCCTTTTTTB
T ss_pred             CCCHHHHHHHHHHHHHHcCCE--EEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCC--CcCCCCCCChhhcc
Confidence            346789999999999999986  666 689999886  444 8898888888999999999999  788899998  566


Q ss_pred             cceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHH
Q psy2343         120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEET  199 (396)
Q Consensus       120 g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~  199 (396)
                      +..+|+..+.+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++....       .             .    
T Consensus       136 ~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------~-------------~----  191 (325)
T 2q7v_A          136 GKGVSTCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA-------N-------------K----  191 (325)
T ss_dssp             TTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS-------C-------------H----
T ss_pred             CceEEEeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc-------c-------------h----
Confidence            666776655555556789999999999999999999999999999999763210       0             0    


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCC----eEEec---CCc--Ee
Q psy2343         200 MAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGN----IVHFV---DDT--HI  268 (396)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~----~v~~~---dG~--~~  268 (396)
                       .+.+++                                  .+...|++.  ..++++.++    +|.+.   +|+  .+
T Consensus       192 -~~~~~l----------------------------------~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i  236 (325)
T 2q7v_A          192 -VAQARA----------------------------------FANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSEL  236 (325)
T ss_dssp             -HHHHHH----------------------------------HTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEE
T ss_pred             -HHHHHH----------------------------------HhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEE
Confidence             111111                                  111244443  346666543    57775   676  58


Q ss_pred             cCcEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhcccc
Q psy2343         269 EVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       269 ~~D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~~~~  344 (396)
                      ++|.||+|||++++.++++.. +..+ ++.+.+.+. +.++.|+||++||+... ...+..|..||+.+|..+.+.+.
T Consensus       237 ~~D~vi~a~G~~p~~~~l~~~-~~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~  312 (325)
T 2q7v_A          237 ATDGVFIFIGHVPNTAFVKDT-VSLRDDGYVDVRDE-IYTNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTERQLA  312 (325)
T ss_dssp             ECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCBTT-TBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EcCEEEEccCCCCChHHHhhh-cccCCCccEecCCC-CccCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888765 5543 455666555 57889999999999764 35677899999999998877654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.94  E-value=8.5e-27  Score=219.32  Aligned_cols=236  Identities=17%  Similarity=0.166  Sum_probs=180.6

Q ss_pred             CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc---cCcEEEcCEEEEcccCCCCCCCCCCCC--Cc
Q psy2343          44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---NGKKKKYDFIAVCNGAQRVARYPNYSG--YF  118 (396)
Q Consensus        44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~---~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~  118 (396)
                      .+.+..++.+|+.++++++++.  +++++ |++++.+++.|.+++.   ++.++.||+||+|||.  .|+.|.++|  .+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~gv~--i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~--~~~~~~~~g~~~~  153 (338)
T 3itj_A           79 DGLTGSELMDRMREQSTKFGTE--IITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGA--SAKRMHLPGEETY  153 (338)
T ss_dssp             TCEEHHHHHHHHHHHHHHTTCE--EECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCE--EECCCCCTTHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHcCCE--EEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCC--CcCCCCCCCchhc
Confidence            3456899999999999999987  88888 9999988888999884   5667899999999999  889999999  56


Q ss_pred             ccceeecccCCCCC--CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccCh
Q psy2343         119 SGEILHSMDYKSPD--QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK  196 (396)
Q Consensus       119 ~g~~~hs~~~~~~~--~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~  196 (396)
                      .+..+|+..+.+..  .+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++....                     ..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~---------------------~~  212 (338)
T 3itj_A          154 WQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA---------------------ST  212 (338)
T ss_dssp             BTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---------------------CH
T ss_pred             cCccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC---------------------CH
Confidence            66667766554444  56899999999999999999999999999999999863210                     00


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCCe-----EEecC-----
Q psy2343         197 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGNI-----VHFVD-----  264 (396)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~~-----v~~~d-----  264 (396)
                          .+.+.+.                                  +...|++.  ..|.+++.+.     |++.+     
T Consensus       213 ----~~~~~l~----------------------------------~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~  254 (338)
T 3itj_A          213 ----IMQKRAE----------------------------------KNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNE  254 (338)
T ss_dssp             ----HHHHHHH----------------------------------HCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTE
T ss_pred             ----HHHHHHH----------------------------------hcCCeEEeecceeEEEEcccCcEEEEEEEECCCCc
Confidence                1111111                                  11145543  3566665432     77776     


Q ss_pred             CcEecCcEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhcc
Q psy2343         265 DTHIEVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       265 G~~~~~D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      ++.+++|.||+|||++++.++++. .+..+ ++.+.+....+.++.|+||++||+... ...+..|..||+.+|..+...
T Consensus       255 ~~~i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~  333 (338)
T 3itj_A          255 ETDLPVSGLFYAIGHTPATKIVAG-QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKY  333 (338)
T ss_dssp             EEEEECSEEEECSCEEECCGGGBT-TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCEEEEEeCCCCChhHhhC-ceEecCCCcEEEcCcccccCCCCEEEeeccCCCCccceeeehhhhHHHHHHHHHH
Confidence            456899999999999999988876 55554 455555566778899999999999853 356678899999999888765


Q ss_pred             cc
Q psy2343         343 IR  344 (396)
Q Consensus       343 ~~  344 (396)
                      ++
T Consensus       334 l~  335 (338)
T 3itj_A          334 LT  335 (338)
T ss_dssp             HT
T ss_pred             Hh
Confidence            43

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.94  E-value=2.5e-26  Score=218.52  Aligned_cols=238  Identities=15%  Similarity=0.181  Sum_probs=177.7

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeEEEEEccCcEEEcCEEEEcccCCC-CCCCCCCCC---Ccccc
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNGKKKKYDFIAVCNGAQR-VARYPNYSG---YFSGE  121 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~~V~~~~g~~~~~d~vvvAtG~~~-~p~~P~~~g---~~~g~  121 (396)
                      +..++.+|+.++++++++.  ++++++|+.|+..+ +.|.|++.+++++.||+||+|||..+ .|..|.++|   .+.+.
T Consensus        72 ~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~  149 (360)
T 3ab1_A           72 PAIDLVESLWAQAERYNPD--VVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGS  149 (360)
T ss_dssp             EHHHHHHHHHHHHHTTCCE--EECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTT
T ss_pred             CHHHHHHHHHHHHHHhCCE--EEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCc
Confidence            5689999999999998876  88999999999874 48999998888899999999999955 677777777   35554


Q ss_pred             eeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHH
Q psy2343         122 ILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA  201 (396)
Q Consensus       122 ~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~  201 (396)
                      .+|.+ +++...+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++.+. +     .+                   .
T Consensus       150 ~v~~~-~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~-~-----~~-------------------~  203 (360)
T 3ab1_A          150 SVYYA-VKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQ-G-----HG-------------------K  203 (360)
T ss_dssp             TEESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCS-S-----CS-------------------H
T ss_pred             eEEEe-cCCHHHcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCC-C-----CH-------------------H
Confidence            44443 455556789999999999999999999999999999999976321 0     00                   0


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecC--CcceEeCC-----eEEec--CC--cEecC
Q psy2343         202 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD--DIKNLNGN-----IVHFV--DD--THIEV  270 (396)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~--~i~~i~~~-----~v~~~--dG--~~~~~  270 (396)
                      +.                               ..+.+...+..|++..  .|.+++.+     +|.+.  +|  ..+++
T Consensus       204 ~~-------------------------------~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~  252 (360)
T 3ab1_A          204 TA-------------------------------HEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEA  252 (360)
T ss_dssp             HH-------------------------------HSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEEC
T ss_pred             HH-------------------------------HHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeC
Confidence            00                               0111122223455432  46666532     57775  78  46899


Q ss_pred             cEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCc---CchhhHHHHHHHHHHHHHhcccc
Q psy2343         271 DTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA---AGLGDGLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       271 D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~---~~~~~~ae~qa~~~a~~l~~~~~  344 (396)
                      |.||+|||++++.++++...+..+++.+.+.. .+.++.|+||++||+...   ...+..+..||+.+|..+.+.+.
T Consensus       253 D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~  328 (360)
T 3ab1_A          253 DRLLILIGFKSNLGPLARWDLELYENALVVDS-HMKTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLSYIK  328 (360)
T ss_dssp             SEEEECCCBCCSCGGGGGSSCCEETTEEECCT-TSBCSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHHHHS
T ss_pred             CEEEECCCCCCCHHHHHhhccccccCeeeecC-CCcCCCCCEEEecCccCCCCccceeehhHHHHHHHHHHHHhhcC
Confidence            99999999999988887666665556676665 456789999999999742   24567788999999998876654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.94  E-value=1e-25  Score=212.21  Aligned_cols=232  Identities=15%  Similarity=0.152  Sum_probs=175.0

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEE-EEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccce
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEV-ELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEI  122 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V-~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~  122 (396)
                      ....++.+|+.++++++++.  +++++ |++|+. ++.|+| .+++++++.||+||+|||.  .|..|++||  .+.+..
T Consensus        68 ~~~~~~~~~l~~~~~~~~v~--~~~~~-v~~i~~-~~~~~v~~~~~g~~~~~d~lviAtG~--~~~~~~i~g~~~~~~~~  141 (335)
T 2a87_A           68 ITGPELMDEMREQALRFGAD--LRMED-VESVSL-HGPLKSVVTADGQTHRARAVILAMGA--AARYLQVPGEQELLGRG  141 (335)
T ss_dssp             BCHHHHHHHHHHHHHHTTCE--EECCC-EEEEEC-SSSSEEEEETTSCEEEEEEEEECCCE--EECCCCCTHHHHTBTTT
T ss_pred             CCHHHHHHHHHHHHHHcCCE--EEEee-EEEEEe-CCcEEEEEeCCCCEEEeCEEEECCCC--CccCCCCCchHhccCCc
Confidence            35789999999999999886  78886 999988 677888 8878888999999999999  788899998  566666


Q ss_pred             eecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHH
Q psy2343         123 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY  202 (396)
Q Consensus       123 ~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~  202 (396)
                      +|+..+.+.....+++|+|||+|.+|+|+|..|++.+.+|+++.|++.+...                    .     .+
T Consensus       142 ~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~~--------------------~-----~~  196 (335)
T 2a87_A          142 VSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRAS--------------------K-----IM  196 (335)
T ss_dssp             EESCHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSSC--------------------T-----TH
T ss_pred             eEEeeccchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCcc--------------------H-----HH
Confidence            7765544444467899999999999999999999999999999988632100                    0     11


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCCe----EEec---CC--cEecCc
Q psy2343         203 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGNI----VHFV---DD--THIEVD  271 (396)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~~----v~~~---dG--~~~~~D  271 (396)
                      .++                                  .+....|++.  ..|++++++.    |.+.   +|  +.+++|
T Consensus       197 ~~~----------------------------------~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D  242 (335)
T 2a87_A          197 LDR----------------------------------ARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVT  242 (335)
T ss_dssp             HHH----------------------------------HHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCS
T ss_pred             HHH----------------------------------HhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecC
Confidence            111                                  1112245543  3566666543    7776   45  458999


Q ss_pred             EEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhccc
Q psy2343         272 TIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       272 ~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      .||+|||++|+.++++ ..+..+ ++.+.+...++.++.|+||++||+... ......|..||+.+|..+...+
T Consensus       243 ~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~~~l  315 (335)
T 2a87_A          243 GVFVAIGHEPRSGLVR-EAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERWL  315 (335)
T ss_dssp             CEEECSCEEECCTTTB-TTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEccCCccChhHhh-cccccCCCccEEeCCCCCccCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHHHHh
Confidence            9999999999998887 345543 466777666678899999999999764 2456678889999988876654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.93  E-value=1.7e-25  Score=208.30  Aligned_cols=233  Identities=16%  Similarity=0.198  Sum_probs=176.4

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC--CeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccc
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE--DIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSG  120 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~--~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g  120 (396)
                      +.+..++.+|+.++++++++.  ++++ +|+++ +++  +.|.|++..+.++.||+||+|||.  .|+.|.+||  .+.+
T Consensus        58 ~~~~~~~~~~~~~~~~~~~v~--~~~~-~v~~i-~~~~~~~~~v~~~~~~~~~~d~lvlAtG~--~~~~~~~~g~~~~~~  131 (315)
T 3r9u_A           58 VMDGISFMAPWSEQCMRFGLK--HEMV-GVEQI-LKNSDGSFTIKLEGGKTELAKAVIVCTGS--APKKAGFKGEDEFFG  131 (315)
T ss_dssp             CBCHHHHHHHHHHHHTTTCCE--EECC-CEEEE-EECTTSCEEEEETTSCEEEEEEEEECCCE--EECCCCCBTTTTTBT
T ss_pred             CCCHHHHHHHHHHHHHHcCcE--EEEE-EEEEE-ecCCCCcEEEEEecCCEEEeCEEEEeeCC--CCCCCCCCChhhcCC
Confidence            457899999999999999987  7777 99999 776  789963332227899999999999  899999999  5777


Q ss_pred             ceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343         121 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM  200 (396)
Q Consensus       121 ~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~  200 (396)
                      ..+|+..+.+...+.+++|+|||+|.+|+|+|..|.+.+.+|+++.|++.+..                     ..    
T Consensus       132 ~~~~~~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~---------------------~~----  186 (315)
T 3r9u_A          132 KGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA---------------------AP----  186 (315)
T ss_dssp             TTEESCHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS---------------------CH----
T ss_pred             CeEEeeecccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC---------------------CH----
Confidence            78888777666677899999999999999999999999999999999864210                     00    


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC-----eEEec--CCc--Eec
Q psy2343         201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVHFV--DDT--HIE  269 (396)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~-----~v~~~--dG~--~~~  269 (396)
                      .+.++++                                  +...|++  ...+.+++.+     +|++.  +|+  .++
T Consensus       187 ~~~~~~~----------------------------------~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~  232 (315)
T 3r9u_A          187 STVEKVK----------------------------------KNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLN  232 (315)
T ss_dssp             HHHHHHH----------------------------------HCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEEC
T ss_pred             HHHHHHH----------------------------------hcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEee
Confidence            1111111                                  1224444  3456666543     26666  886  689


Q ss_pred             CcEEEEccCCCCCCCCCCc---cc-ccccC-CccccccccccCCCCcEEEEecccC-cCchhhHHHHHHHHHHHHHhccc
Q psy2343         270 VDTIIYATGYNRHFPFIDK---EK-LEWKL-GIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       270 ~D~VI~aTG~~~~~~~l~~---~~-~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~-~~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      +|.||+|||++|+..+++.   .. +..+. +.+.+.. .+.++.|+||++||+.. ....+..|..||+.+|..+...+
T Consensus       233 ~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~-~~~t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l  311 (315)
T 3r9u_A          233 VPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDL-KMQTSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAMAYI  311 (315)
T ss_dssp             CSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCT-TCBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCC-CcccCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHHHHH
Confidence            9999999999999888775   22 55443 5566555 56789999999999964 24567788999999998886554

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.93  E-value=1.2e-25  Score=209.11  Aligned_cols=233  Identities=17%  Similarity=0.150  Sum_probs=174.9

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe---CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccc
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFS  119 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~---~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~  119 (396)
                      +++..++.+|++++++++++.  ++++++|+.++++   ++.|.|++++|+++.||+||+|||.  .|..|.+||  .+.
T Consensus        52 ~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~--~~~~~~~~g~~~~~  127 (310)
T 1fl2_A           52 KTEGQKLAGALKVHVDEYDVD--VIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA--KWRNMNVPGEDQYR  127 (310)
T ss_dssp             SEEHHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCE--EECCCCCTTTTTTB
T ss_pred             CCCHHHHHHHHHHHHHHcCCe--EEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCC--CcCCCCCCChhhcc
Confidence            446789999999999999886  8899999999875   3479999988888999999999999  688888888  566


Q ss_pred             cceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHH
Q psy2343         120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEET  199 (396)
Q Consensus       120 g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~  199 (396)
                      +..+|+........+.+|+|+|||+|.+|+|+|..|++.+.+|+++.|++.+..         +           .    
T Consensus       128 ~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------~-----------~----  183 (310)
T 1fl2_A          128 TKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---------D-----------Q----  183 (310)
T ss_dssp             TTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---------C-----------H----
T ss_pred             cceeEEeccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCc---------c-----------H----
Confidence            666666554434456789999999999999999999999999999999864200         0           0    


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccC-CCeEec--CCcceEeCC-----eEEecC---Cc--
Q psy2343         200 MAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH-GDILPK--DDIKNLNGN-----IVHFVD---DT--  266 (396)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-g~i~~~--~~i~~i~~~-----~v~~~d---G~--  266 (396)
                       .+.                                   +.+.. ..|++.  ..++++.++     +|.+.+   |+  
T Consensus       184 -~~~-----------------------------------~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~  227 (310)
T 1fl2_A          184 -VLQ-----------------------------------DKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIH  227 (310)
T ss_dssp             -HHH-----------------------------------HHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEE
T ss_pred             -HHH-----------------------------------HHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEE
Confidence             111                                   11111 234443  346666533     467764   54  


Q ss_pred             EecCcEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCcC-chhhHHHHHHHHHHHHHhccc
Q psy2343         267 HIEVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       267 ~~~~D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~-~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      .+++|.||+|||++|+.+++... +..+ .+.+.+...+ .++.|+||++||+.... .....|..||+.+|..+...+
T Consensus       228 ~i~~D~vi~a~G~~p~~~~l~~~-l~~~~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l  304 (310)
T 1fl2_A          228 NIELAGIFVQIGLLPNTNWLEGA-VERNRMGEIIIDAKC-ETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYL  304 (310)
T ss_dssp             EEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTC-BCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCEEEEeeCCccCchHHhcc-ccccCCCcEEcCCCC-ccCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHHHHH
Confidence            58999999999999998888753 5543 3566666554 68999999999997643 356788899999998887654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.93  E-value=1.2e-25  Score=209.97  Aligned_cols=236  Identities=19%  Similarity=0.284  Sum_probs=175.3

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccccee
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEIL  123 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~  123 (396)
                      ....++.+|+.++++++++.  +++++ |+.++.+++.|.| +.++.++.||+||+|||.  .|..|.++|  .+.+..+
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~--~~~~~-v~~i~~~~~~~~v-~~~~~~~~~~~lv~AtG~--~~~~~~~~g~~~~~~~~~  132 (320)
T 1trb_A           59 LTGPLLMERMHEHATKFETE--IIFDH-INKVDLQNRPFRL-NGDNGEYTCDALIIATGA--SARYLGLPSEEAFKGRGV  132 (320)
T ss_dssp             CBHHHHHHHHHHHHHHTTCE--EECCC-EEEEECSSSSEEE-EESSCEEEEEEEEECCCE--EECCCCCHHHHHTBTTTE
T ss_pred             CCHHHHHHHHHHHHHHCCCE--EEEee-eeEEEecCCEEEE-EeCCCEEEcCEEEECCCC--CcCCCCCCChHHhCCcee
Confidence            45789999999999999986  77775 9999887788988 667778999999999999  788888988  4555566


Q ss_pred             ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343         124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI  203 (396)
Q Consensus       124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  203 (396)
                      |+..+.+.....+++|+|||+|.+|+|+|..|++.+.+|+++.|++.+..                     .+    .+.
T Consensus       133 ~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------------------~~----~~~  187 (320)
T 1trb_A          133 SACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA---------------------EK----ILI  187 (320)
T ss_dssp             ESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC---------------------CH----HHH
T ss_pred             EecccCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc---------------------CH----HHH
Confidence            66554444446789999999999999999999999999999999863210                     00    111


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCe-----EEecC----C--cEecC
Q psy2343         204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNI-----VHFVD----D--THIEV  270 (396)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~-----v~~~d----G--~~~~~  270 (396)
                      +.                               +.+.+.+..|++  ...|.+++.+.     |.+.+    |  +.+++
T Consensus       188 ~~-------------------------------l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~  236 (320)
T 1trb_A          188 KR-------------------------------LMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDV  236 (320)
T ss_dssp             HH-------------------------------HHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEEC
T ss_pred             HH-------------------------------HHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEc
Confidence            11                               111222234554  34566665432     77765    5  45899


Q ss_pred             cEEEEccCCCCCCCCCCcccccccCCcccccccc----ccCCCCcEEEEecccCcC-chhhHHHHHHHHHHHHHhcccc
Q psy2343         271 DTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHI----APRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       271 D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~----~~~~~p~l~~iG~~~~~~-~~~~~ae~qa~~~a~~l~~~~~  344 (396)
                      |.||+|||++++.++++. .+..+++.+.+...+    ..++.|+||++||+.... .....|..||+.+|..+...+.
T Consensus       237 D~vv~a~G~~p~~~~~~~-~l~~~~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~  314 (320)
T 1trb_A          237 AGLFVAIGHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLD  314 (320)
T ss_dssp             SEEEECSCEEESCGGGTT-TSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEEeCCCCChHHhcc-cccccCceEEECCCcccccccCCCCCEEEcccccCCcchhhhhhhccHHHHHHHHHHHHH
Confidence            999999999999888873 344455556665553    478899999999997642 4567788999999988876654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.93  E-value=6e-25  Score=205.39  Aligned_cols=231  Identities=15%  Similarity=0.148  Sum_probs=171.3

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccccee
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEIL  123 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~  123 (396)
                      ....++.+++.++++++++.  +++ ++|+.++.+++.|.|.+ ++.++.||+||+|||.  .|+.|.++|  .+.+..+
T Consensus        69 ~~~~~~~~~~~~~~~~~~v~--~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~--~~~~~~i~g~~~~~~~~~  142 (319)
T 3cty_A           69 IVGSELAKLFADHAANYAKI--REG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGT--THKHLGVKGESEYFGKGT  142 (319)
T ss_dssp             BCHHHHHHHHHHHHHTTSEE--EET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCE--EECCCCCBTTTTTBTTTE
T ss_pred             cCHHHHHHHHHHHHHHcCCE--EEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCC--CcccCCCCChHHhCCceE
Confidence            45789999999999998876  666 78999998888898887 5567899999999998  788888888  4544555


Q ss_pred             ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343         124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI  203 (396)
Q Consensus       124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  203 (396)
                      |.....+...+.+++|+|||+|.+|+|+|..|++.+++|+++.|++....       . .                 .+.
T Consensus       143 ~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~-------~-~-----------------~l~  197 (319)
T 3cty_A          143 SYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC-------E-N-----------------AYV  197 (319)
T ss_dssp             ESCHHHHGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS-------C-H-----------------HHH
T ss_pred             EEEEecchhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC-------C-H-----------------HHH
Confidence            55444333456789999999999999999999999999999998763210       0 0                 111


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC-----eEEec---CCc--EecCc
Q psy2343         204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVHFV---DDT--HIEVD  271 (396)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~-----~v~~~---dG~--~~~~D  271 (396)
                      +.+.                                   ...|++  ...++++.++     +|.+.   +|+  .+++|
T Consensus       198 ~~l~-----------------------------------~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D  242 (319)
T 3cty_A          198 QEIK-----------------------------------KRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETD  242 (319)
T ss_dssp             HHHH-----------------------------------HTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCS
T ss_pred             HHHh-----------------------------------cCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecC
Confidence            1111                                   112222  2345555432     46665   676  58999


Q ss_pred             EEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhccc
Q psy2343         272 TIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       272 ~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      .||+|||++++.+++....+..+ ++.+.+.+. +.++.|+||++||+... ...+..|..||+.+|..+...+
T Consensus       243 ~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l  315 (319)
T 3cty_A          243 GVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSR-QRTSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYSDS  315 (319)
T ss_dssp             EEEECCCEEECCGGGTTSCCCBCTTSCBCCCTT-CBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCccChHHHhhccccccCCccEeCCCC-CccCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHHHHh
Confidence            99999999999988886656554 356666655 57899999999999764 2567789999999999887654

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.92  E-value=1.5e-24  Score=203.74  Aligned_cols=231  Identities=17%  Similarity=0.177  Sum_probs=171.8

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--C----ccc
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--Y----FSG  120 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~----~~g  120 (396)
                      ...++.+++.++++++++.  +++++ |+.++..++.|+|++ ++.++.||+||+|||.  .|..|++||  .    |.+
T Consensus        68 ~~~~~~~~l~~~~~~~gv~--~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~--~~~~~~~~g~~~~~~~~~~  141 (333)
T 1vdc_A           68 LGVELTDKFRKQSERFGTT--IFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGA--VAKRLSFVGSGEVLGGFWN  141 (333)
T ss_dssp             EHHHHHHHHHHHHHHTTCE--EECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCE--EECCCCCBTCSSSSSCCBT
T ss_pred             CHHHHHHHHHHHHHHCCCE--EEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCC--CcCCCCCCCcccccccccc
Confidence            5689999999999999986  77886 999988777899988 7777999999999999  688888888  3    555


Q ss_pred             ceeecccCCCCCC--CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHH
Q psy2343         121 EILHSMDYKSPDQ--IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEE  198 (396)
Q Consensus       121 ~~~hs~~~~~~~~--~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~  198 (396)
                      ..+|+..+.+...  ..+++|+|||+|.+|+|+|..|++.+.+|+++.|++....                    ..   
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~--------------------~~---  198 (333)
T 1vdc_A          142 RGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA--------------------SK---  198 (333)
T ss_dssp             TTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS--------------------CH---
T ss_pred             CcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc--------------------cH---
Confidence            6667655444333  6789999999999999999999999999999999863210                    00   


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCC-------eEEec---CC-
Q psy2343         199 TMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGN-------IVHFV---DD-  265 (396)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~-------~v~~~---dG-  265 (396)
                        .+.++                                  .+....|++.  ..|.+++++       .|.+.   +| 
T Consensus       199 --~~~~~----------------------------------~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~  242 (333)
T 1vdc_A          199 --IMQQR----------------------------------ALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGD  242 (333)
T ss_dssp             --HHHHH----------------------------------HHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCC
T ss_pred             --HHHHH----------------------------------HHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCc
Confidence              11111                                  1122245543  356666532       27776   46 


Q ss_pred             -cEecCcEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhcc
Q psy2343         266 -THIEVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       266 -~~~~~D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~~  342 (396)
                       +++++|.||+|||++++.++++. .+..+ ++.+.+...++.++.|+||++||+... ......|..||+.+|..+...
T Consensus       243 ~~~i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~  321 (333)
T 1vdc_A          243 VSDLKVSGLFFAIGHEPATKFLDG-GVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHY  321 (333)
T ss_dssp             EEEEECSEEEECSCEEESCGGGTT-SSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecCEEEEEeCCccchHHhhc-cccccCCCCEEechhhcccCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHHHH
Confidence             45899999999999999988873 44443 466777766678899999999999764 245667888888888777654


Q ss_pred             c
Q psy2343         343 I  343 (396)
Q Consensus       343 ~  343 (396)
                      +
T Consensus       322 l  322 (333)
T 1vdc_A          322 L  322 (333)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.92  E-value=4.1e-24  Score=212.74  Aligned_cols=232  Identities=16%  Similarity=0.152  Sum_probs=176.1

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe---CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccc
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSG  120 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~---~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g  120 (396)
                      ....++.+|++++++++++.  ++++++|+.|+++   ++.|.|++++|.++.||+||+|||+  .|+.|.+||  .|.+
T Consensus       264 ~~~~~l~~~l~~~~~~~gv~--v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~--~~~~~~ipG~~~~~~  339 (521)
T 1hyu_A          264 TEGQKLAGALKAHVSDYDVD--VIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGA--KWRNMNVPGEDQYRT  339 (521)
T ss_dssp             BCHHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCE--EECCCCCTTTTTTTT
T ss_pred             CCHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCC--CcCCCCCCChhhhcC
Confidence            46789999999999999987  8899999999864   3479999988888999999999999  788888998  5666


Q ss_pred             ceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343         121 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM  200 (396)
Q Consensus       121 ~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~  200 (396)
                      ..+|.+...+...+.+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.+..                     .     
T Consensus       340 ~~v~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---------------------~-----  393 (521)
T 1hyu_A          340 KGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---------------------D-----  393 (521)
T ss_dssp             TTEECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---------------------C-----
T ss_pred             ceEEEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---------------------C-----
Confidence            66777666555567899999999999999999999999999999998764210                     0     


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccC-CCeEec--CCcceEeCC-----eEEecC---Cc--E
Q psy2343         201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGH-GDILPK--DDIKNLNGN-----IVHFVD---DT--H  267 (396)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-g~i~~~--~~i~~i~~~-----~v~~~d---G~--~  267 (396)
                      .                                  .+.+.+.. .+|++.  ..+++++++     +|.+.|   |+  .
T Consensus       394 ~----------------------------------~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~  439 (521)
T 1hyu_A          394 Q----------------------------------VLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHS  439 (521)
T ss_dssp             H----------------------------------HHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEE
T ss_pred             H----------------------------------HHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEE
Confidence            0                                  11111222 245543  346666542     466754   54  4


Q ss_pred             ecCcEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCcC-chhhHHHHHHHHHHHHHhccc
Q psy2343         268 IEVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       268 ~~~D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~-~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      +++|.||+|+|++|+.+++... +..+ .+.+.+... +.++.|+||++||+.... ..+..|..||+.+|..+...+
T Consensus       440 i~~D~vi~a~G~~pn~~~l~~~-l~~~~~G~I~Vd~~-~~ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~L  515 (521)
T 1hyu_A          440 VALAGIFVQIGLLPNTHWLEGA-LERNRMGEIIIDAK-CETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYL  515 (521)
T ss_dssp             EECSEEEECCCEEESCGGGTTT-SCBCTTSCBCCCTT-CBCSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEcCEEEECcCCCCCchHHhhh-hccCCCCcEEeCCC-CCCCCCCEEEeecccCCCcceeeehHHhHHHHHHHHHHHH
Confidence            8999999999999998888753 4443 355655544 468899999999997643 456788899999988776543

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.92  E-value=1.6e-26  Score=221.48  Aligned_cols=226  Identities=16%  Similarity=0.166  Sum_probs=165.0

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeec
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHS  125 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs  125 (396)
                      .+.+++..+..++++++++.  ++++++|++|+++++  +|++++|+++.||+||||||+  .|+.|++||..  .+++.
T Consensus        59 ~~~~~l~~~~~~~~~~~~i~--~~~~~~V~~id~~~~--~v~~~~g~~~~yd~lvlAtG~--~p~~p~i~G~~--~v~~~  130 (385)
T 3klj_A           59 KSIDDILIKKNDWYEKNNIK--VITSEFATSIDPNNK--LVTLKSGEKIKYEKLIIASGS--IANKIKVPHAD--EIFSL  130 (385)
T ss_dssp             CCGGGTBSSCHHHHHHTTCE--EECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCE--EECCCCCTTCS--CEECC
T ss_pred             CCHHHccCCCHHHHHHCCCE--EEeCCEEEEEECCCC--EEEECCCCEEECCEEEEecCC--CcCCCCCCCCC--CeEEe
Confidence            34556666677777788887  889999999997654  688888988999999999998  89999999832  34554


Q ss_pred             ccCCCCCCCC-----CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343         126 MDYKSPDQIR-----NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM  200 (396)
Q Consensus       126 ~~~~~~~~~~-----~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~  200 (396)
                      ..+.+...++     +|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.+ +|+.                +..     
T Consensus       131 ~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~-l~~~----------------~~~-----  188 (385)
T 3klj_A          131 YSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYP-LERQ----------------LDR-----  188 (385)
T ss_dssp             SSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS-CTTT----------------SCH-----
T ss_pred             CCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc-chhh----------------cCH-----
Confidence            4333332222     789999999999999999999999999999998642 1111                000     


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCCeEEecCCcEecCcEEEEccC
Q psy2343         201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGNIVHFVDDTHIEVDTIIYATG  278 (396)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~~v~~~dG~~~~~D~VI~aTG  278 (396)
                      .+.+.                               +.+.+....|++.  ..++++         |+++++|.||+|||
T Consensus       189 ~~~~~-------------------------------~~~~l~~~gV~~~~~~~v~~i---------g~~~~~D~vv~a~G  228 (385)
T 3klj_A          189 DGGLF-------------------------------LKDKLDRLGIKIYTNSNFEEM---------GDLIRSSCVITAVG  228 (385)
T ss_dssp             HHHHH-------------------------------HHHHHHTTTCEEECSCCGGGC---------HHHHHHSEEEECCC
T ss_pred             HHHHH-------------------------------HHHHHHhCCCEEEeCCEEEEc---------CeEEecCeEEECcC
Confidence            11111                               1122222234432  344444         66789999999999


Q ss_pred             CCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccC----cCchhhHHHHHHHHHHHHHhccc
Q psy2343         279 YNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNA----AAGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       279 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~----~~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      ++|+.++++...+..+++ +.+.. .+.++.|+||++||+..    ....+..|..||+.+|..+.|..
T Consensus       229 ~~p~~~~~~~~gl~~~~g-i~vd~-~~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~  295 (385)
T 3klj_A          229 VKPNLDFIKDTEIASKRG-ILVND-HMETSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGED  295 (385)
T ss_dssp             EEECCGGGTTSCCCBSSS-EEECT-TCBCSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             cccChhhhhhcCCCcCCC-EEECC-CcccCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcCCC
Confidence            999999988777776544 65554 45789999999999975    24567899999999999999864

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.90  E-value=2.3e-24  Score=208.55  Aligned_cols=226  Identities=15%  Similarity=0.108  Sum_probs=163.3

Q ss_pred             HHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCC----
Q psy2343          57 SYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPD----  132 (396)
Q Consensus        57 ~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~----  132 (396)
                      .+.+++++.  ++++++|+.|++..  ++|++.+|+++.||+||+|||.  .|+.|++||.-...+++.....+..    
T Consensus        65 ~~~~~~~i~--~~~~~~v~~id~~~--~~v~~~~g~~~~~d~lvlAtG~--~p~~~~ipG~~~~~v~~~~~~~d~~~l~~  138 (410)
T 3ef6_A           65 DWYGEARID--MLTGPEVTALDVQT--RTISLDDGTTLSADAIVIATGS--RARTMALPGSQLPGVVTLRTYGDVQVLRD  138 (410)
T ss_dssp             THHHHTTCE--EEESCCEEEEETTT--TEEEETTSCEEECSEEEECCCE--EECCCCCTTTTSTTEECCCSHHHHHHHHH
T ss_pred             HHHHHCCCE--EEeCCEEEEEECCC--CEEEECCCCEEECCEEEEccCC--cccCCCCCCccccceEEeccHHHHHHHHH
Confidence            444567776  88999999998643  4788888888999999999999  7999999982222344432222211    


Q ss_pred             -CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhc
Q psy2343         133 -QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAG  211 (396)
Q Consensus       133 -~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  211 (396)
                       ...+|+|+|||+|.+|+|+|..+.+.+.+|+++.|.+.+. |+.            ++.         .+.+.      
T Consensus       139 ~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l-~~~------------~~~---------~~~~~------  190 (410)
T 3ef6_A          139 SWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL-VRV------------LGR---------RIGAW------  190 (410)
T ss_dssp             HCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-HHH------------HCH---------HHHHH------
T ss_pred             HhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc-hhh------------cCH---------HHHHH------
Confidence             2358999999999999999999999999999999986421 000            000         11111      


Q ss_pred             CCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC----eEEecCCcEecCcEEEEccCCCCCCCC
Q psy2343         212 FDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFVDDTHIEVDTIIYATGYNRHFPF  285 (396)
Q Consensus       212 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~~~dG~~~~~D~VI~aTG~~~~~~~  285 (396)
                                               +.+.+.+..|++  ...|++++++    .|.++||+++++|.||+|||++++.++
T Consensus       191 -------------------------l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l  245 (410)
T 3ef6_A          191 -------------------------LRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQL  245 (410)
T ss_dssp             -------------------------HHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECCHH
T ss_pred             -------------------------HHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecHHH
Confidence                                     111122223443  4567777654    689999999999999999999999888


Q ss_pred             CCcccccccCCccccccccccCCCCcEEEEecccCcCc---------hhhHHHHHHHHHHHHHhccc
Q psy2343         286 IDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG---------LGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       286 l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~---------~~~~ae~qa~~~a~~l~~~~  343 (396)
                      ++...+..+ +++.+...+ .++.|+||++||+.....         .++.|..||+.+|+.|.|..
T Consensus       246 ~~~~gl~~~-~gi~vd~~~-~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~  310 (410)
T 3ef6_A          246 ARQAGLACD-RGVIVDHCG-ATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKN  310 (410)
T ss_dssp             HHHTTCCBS-SSEECCTTS-BCSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHhCCCccC-CeEEEccCe-eECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcCCC
Confidence            877666666 446555544 789999999999975322         36899999999999999864

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.90  E-value=1.6e-24  Score=206.41  Aligned_cols=228  Identities=14%  Similarity=0.118  Sum_probs=165.6

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeeccc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMD  127 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~  127 (396)
                      .+++..+...+++++++.  ++++++|+.|++.  .++|+ .+++++.||+||||||+  .|+.|++|| . ..+++..+
T Consensus        59 ~~~~~~~~~~~~~~~~v~--~~~g~~v~~id~~--~~~V~-~~g~~~~~d~lViATGs--~p~~p~i~G-~-~~v~~~~~  129 (367)
T 1xhc_A           59 RNRLFPYSLDWYRKRGIE--IRLAEEAKLIDRG--RKVVI-TEKGEVPYDTLVLATGA--RAREPQIKG-K-EYLLTLRT  129 (367)
T ss_dssp             GGGGCSSCHHHHHHHTEE--EECSCCEEEEETT--TTEEE-ESSCEEECSEEEECCCE--EECCCCSBT-G-GGEECCCS
T ss_pred             HHHhccCCHHHHHhCCcE--EEECCEEEEEECC--CCEEE-ECCcEEECCEEEECCCC--CCCCCCCCC-c-CCEEEEcC
Confidence            344444555666777876  7889899999864  35677 67778999999999998  899999988 2 23555444


Q ss_pred             CCCCCCC-----CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHH
Q psy2343         128 YKSPDQI-----RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY  202 (396)
Q Consensus       128 ~~~~~~~-----~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~  202 (396)
                      +.+...+     .+++|+|||+|.+|+|+|..|++.+.+|+++.|.+.. +|     .+.                  .+
T Consensus       130 ~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~-----~~~------------------~~  185 (367)
T 1xhc_A          130 IFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF-LG-----LDE------------------EL  185 (367)
T ss_dssp             HHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC-TT-----CCH------------------HH
T ss_pred             HHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCee-cc-----CCH------------------HH
Confidence            3332222     4689999999999999999999999999999987631 11     010                  11


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCeEEecCCcEecCcEEEEccCCC
Q psy2343         203 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNIVHFVDDTHIEVDTIIYATGYN  280 (396)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~  280 (396)
                      .+.                               +.+.+.+..|++  ...|++++.+.|+++||+ +++|.||+|||++
T Consensus       186 ~~~-------------------------------l~~~l~~~gV~i~~~~~v~~i~~~~v~~~~g~-i~~D~vi~a~G~~  233 (367)
T 1xhc_A          186 SNM-------------------------------IKDMLEETGVKFFLNSELLEANEEGVLTNSGF-IEGKVKICAIGIV  233 (367)
T ss_dssp             HHH-------------------------------HHHHHHHTTEEEECSCCEEEECSSEEEETTEE-EECSCEEEECCEE
T ss_pred             HHH-------------------------------HHHHHHHCCCEEEcCCEEEEEEeeEEEECCCE-EEcCEEEECcCCC
Confidence            111                               111222224554  346788887789999998 9999999999999


Q ss_pred             CCCCCCCcccccccCCccccccccccCCCCcEEEEecccCc----CchhhHHHHHHHHHHHHHhcc
Q psy2343         281 RHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA----AGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       281 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~----~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      |+.++++...++.++ ++.+.+. +.++.|+||++||+...    ...++.|..||+.+|.++.|.
T Consensus       234 p~~~ll~~~gl~~~~-gi~Vd~~-~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~  297 (367)
T 1xhc_A          234 PNVDLARRSGIHTGR-GILIDDN-FRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGE  297 (367)
T ss_dssp             ECCHHHHHTTCCBSS-SEECCTT-SBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred             cCHHHHHhCCCCCCC-CEEECCC-cccCCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcCC
Confidence            998877766666553 4666544 57889999999999642    246789999999999999875

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.90  E-value=2.4e-23  Score=193.94  Aligned_cols=232  Identities=16%  Similarity=0.166  Sum_probs=160.9

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccce
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEI  122 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~  122 (396)
                      ..+..++.+++.+++++++..  +. ..+|..+....+.+.+.+.++.++.||+||||||+  .|+.|++||  .+.+..
T Consensus        62 ~i~~~~l~~~~~~~~~~~~~~--~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~--~~~~~~ipG~~~~~~~~  136 (314)
T 4a5l_A           62 GIDGNELMMNMRTQSEKYGTT--II-TETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGA--TAKRMHVPGEDKYWQNG  136 (314)
T ss_dssp             CEEHHHHHHHHHHHHHHTTCE--EE-CCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCE--EECCCCCTTHHHHBTTT
T ss_pred             cCCHHHHHHHHHHHHhhcCcE--EE-EeEEEEeecCCCceEEEECCCeEEEEeEEEEcccc--cccccCCCccccccccc
Confidence            346789999999999999875  43 44677777666777788888888999999999999  899999999  445555


Q ss_pred             eecccCCCCC--CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343         123 LHSMDYKSPD--QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM  200 (396)
Q Consensus       123 ~hs~~~~~~~--~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~  200 (396)
                      ++...+....  .+++|+|+|||+|.+|+|+|..+++.+.+|+++.|.+....+       .                  
T Consensus       137 ~~~~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~-------~------------------  191 (314)
T 4a5l_A          137 VSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRAS-------K------------------  191 (314)
T ss_dssp             EESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSC-------H------------------
T ss_pred             eeeehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeeccccccccc-------c------------------
Confidence            6665554443  357899999999999999999999999999999987532110       0                  


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeC-----CeEEe-----cCCcEe
Q psy2343         201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNG-----NIVHF-----VDDTHI  268 (396)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~-----~~v~~-----~dG~~~  268 (396)
                      .......                                  ....+...  ..+.++.+     .++.+     .+++.+
T Consensus       192 ~~~~~~~----------------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i  237 (314)
T 4a5l_A          192 TMQERVL----------------------------------NHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKVV  237 (314)
T ss_dssp             HHHHHHH----------------------------------TCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEEEE
T ss_pred             hhhhhhh----------------------------------cccceeeEeeeeeEEEEeeeeccceeEEeecccccceee
Confidence            0111100                                  00011100  01111111     12222     345679


Q ss_pred             cCcEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcC-chhhHHHHHHHHHHHHHhcc
Q psy2343         269 EVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       269 ~~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~-~~~~~ae~qa~~~a~~l~~~  342 (396)
                      ++|.|++|+|.+|+..++...+ ..++++..+.+. +.|+.|+||++||+.... .+...|..|++.+|..+...
T Consensus       238 ~~d~vi~a~G~~pn~~~l~~~~-~~~~~G~iv~~~-~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~~y  310 (314)
T 4a5l_A          238 PVAGLFYAIGHSPNSKFLGGQV-KTADDGYILTEG-PKTSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCEKW  310 (314)
T ss_dssp             ECSEEEECSCEEESCGGGTTSS-CBCTTSCBCCBT-TBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceEecccccChhHhcccc-eEcCCeeEeCCC-CccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999887543 344444445544 589999999999997543 35667788888888766543

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.89  E-value=2.4e-23  Score=202.83  Aligned_cols=229  Identities=18%  Similarity=0.200  Sum_probs=163.4

Q ss_pred             HHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc---CcEEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCC
Q psy2343          57 SYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---GKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSP  131 (396)
Q Consensus        57 ~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~---g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~  131 (396)
                      .+.+++++.  ++.+++|+.|+...+...+....   +.++.||+||||||+  .|+.|+++|  .+..+.+......+.
T Consensus        65 ~~~~~~~i~--~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs--~p~~p~i~g~~~~~~~~~~~~~~l~~  140 (437)
T 4eqs_A           65 KFYDRKQIT--VKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGA--SANSLGFESDITFTLRNLEDTDAIDQ  140 (437)
T ss_dssp             HHHHHHCCE--EEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCE--EECCCCCCCTTEECCSSHHHHHHHHH
T ss_pred             HHHHhcCCE--EEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCC--ccccccccCceEEeeccHHHHHHHHH
Confidence            445667876  88899999999876655555432   335789999999999  899999888  222211111100000


Q ss_pred             --CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHH
Q psy2343         132 --DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKL  209 (396)
Q Consensus       132 --~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  209 (396)
                        ...+.++|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|..             +..+                
T Consensus       141 ~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l-l~~~-------------d~~~----------------  190 (437)
T 4eqs_A          141 FIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI-NKLM-------------DADM----------------  190 (437)
T ss_dssp             HHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCC-STTS-------------CGGG----------------
T ss_pred             hhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeeccc-cccc-------------cchh----------------
Confidence              0124689999999999999999999999999999998642 1111             0111                


Q ss_pred             hcCCCCCCCCCCCCCCCCcccCccCchhhhcccCC--CeEecCCcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCC
Q psy2343         210 AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG--DILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFID  287 (396)
Q Consensus       210 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g--~i~~~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~  287 (396)
                                              ...+.+.+...  ++.....|++++++.|.+++|+++++|.||+|+|.+|+..+++
T Consensus       191 ------------------------~~~~~~~l~~~gV~i~~~~~v~~~~~~~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~  246 (437)
T 4eqs_A          191 ------------------------NQPILDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIE  246 (437)
T ss_dssp             ------------------------GHHHHHHHHHTTCCEEESCCEEEEETTEEEETTSCEEECSEEEECCCEEESCGGGT
T ss_pred             ------------------------HHHHHHHhhccceEEEeccEEEEecCCeeeecCCeEEeeeeEEEEeceecCcHHHH
Confidence                                    11111222222  3445567889999999999999999999999999999998888


Q ss_pred             cccccccC-CccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHHhcccc
Q psy2343         288 KEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       288 ~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l~~~~~  344 (396)
                      ..++..+. +.+.+.+ .+.|++|+||++||+...          ...++.|..||+.+|.+|.|.-.
T Consensus       247 ~~gl~~~~~G~I~vd~-~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~  313 (437)
T 4eqs_A          247 SSNIKLDRKGFIPVND-KFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDT  313 (437)
T ss_dssp             TSSCCCCTTSCEECCT-TCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTT
T ss_pred             hhhhhhccCCcEecCC-CccCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCC
Confidence            77776654 4455554 457899999999999642          23577899999999999998643

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.89  E-value=6.9e-24  Score=205.55  Aligned_cols=234  Identities=15%  Similarity=0.087  Sum_probs=166.6

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM  126 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~  126 (396)
                      .+++..+...+.++.++.  ++++++|+.|++..  +.|++.+++++.||+||+|||.  .|+.|+++| ...+ +++..
T Consensus        64 ~~~~~~~~~~~~~~~~i~--~~~~~~v~~id~~~--~~v~~~~g~~~~~d~lvlAtG~--~~~~~~i~g~~~~~-v~~~~  136 (415)
T 3lxd_A           64 FERICIRPAQFWEDKAVE--MKLGAEVVSLDPAA--HTVKLGDGSAIEYGKLIWATGG--DPRRLSCVGADLAG-VHAVR  136 (415)
T ss_dssp             SGGGBSSCHHHHHHTTEE--EEETCCEEEEETTT--TEEEETTSCEEEEEEEEECCCE--ECCCCBTTSSCCBT-EECCC
T ss_pred             HHHhccCCHHHHHHCCcE--EEeCCEEEEEECCC--CEEEECCCCEEEeeEEEEccCC--ccCCCCCCCccccC-EEEEc
Confidence            344555556666777876  88899999998643  4788888888999999999998  899999998 4332 32221


Q ss_pred             cCCCCC-----CCC-CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343         127 DYKSPD-----QIR-NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM  200 (396)
Q Consensus       127 ~~~~~~-----~~~-~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~  200 (396)
                      ...+..     ... +++|+|||+|.+|+|+|..+.+.+.+|+++.+.+.+. ++.                +..     
T Consensus       137 ~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l-~~~----------------~~~-----  194 (415)
T 3lxd_A          137 TKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVL-ARV----------------AGE-----  194 (415)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-TTT----------------SCH-----
T ss_pred             CHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchh-hhh----------------cCH-----
Confidence            111111     113 8999999999999999999999999999999986321 110                000     


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeCC-----eEEecCCcEecCcEE
Q psy2343         201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGN-----IVHFVDDTHIEVDTI  273 (396)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~~-----~v~~~dG~~~~~D~V  273 (396)
                      .+.+.                               +.+.+++..|+  ....|++++++     +|.+.||+++++|.|
T Consensus       195 ~~~~~-------------------------------l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~V  243 (415)
T 3lxd_A          195 ALSEF-------------------------------YQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIV  243 (415)
T ss_dssp             HHHHH-------------------------------HHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEE
T ss_pred             HHHHH-------------------------------HHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEE
Confidence            11111                               11122222344  34567777643     588999999999999


Q ss_pred             EEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcCc-----------hhhHHHHHHHHHHHHHhcc
Q psy2343         274 IYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG-----------LGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       274 I~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~-----------~~~~ae~qa~~~a~~l~~~  342 (396)
                      |+|||++|+.++++...+..++ ++.+..+ +.++.|+||++||+.....           .++.|..||+.+|++|.|.
T Consensus       244 v~a~G~~p~~~l~~~~gl~~~~-gi~vd~~-~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~  321 (415)
T 3lxd_A          244 IVGIGIVPCVGALISAGASGGN-GVDVDEF-CRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGA  321 (415)
T ss_dssp             EECSCCEESCHHHHHTTCCCSS-SEECCTT-CBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTC
T ss_pred             EECCCCccChHHHHhCCCCcCC-CEEECCC-CCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCC
Confidence            9999999998888766666654 4655544 4778999999999975432           3688999999999999986


Q ss_pred             c
Q psy2343         343 I  343 (396)
Q Consensus       343 ~  343 (396)
                      .
T Consensus       322 ~  322 (415)
T 3lxd_A          322 P  322 (415)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.89  E-value=6.6e-24  Score=205.11  Aligned_cols=223  Identities=14%  Similarity=0.119  Sum_probs=160.3

Q ss_pred             HHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCC-CCCcccceeecccCCCC-----CC
Q psy2343          60 KKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNY-SGYFSGEILHSMDYKSP-----DQ  133 (396)
Q Consensus        60 ~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~-~g~~~g~~~hs~~~~~~-----~~  133 (396)
                      +++++.  ++++++|+.|+++  .++|++++++++.||+||+|||+  .|+.|++ +|.-. .+++.....+.     ..
T Consensus        70 ~~~~v~--~~~~~~v~~i~~~--~~~v~~~~g~~~~~d~lviAtG~--~~~~~~i~~G~~~-~v~~~~~~~~~~~l~~~~  142 (408)
T 2gqw_A           70 RAPEVE--WLLGVTAQSFDPQ--AHTVALSDGRTLPYGTLVLATGA--APRALPTLQGATM-PVHTLRTLEDARRIQAGL  142 (408)
T ss_dssp             TSCSCE--EEETCCEEEEETT--TTEEEETTSCEEECSEEEECCCE--EECCCGGGTTCSS-CEEECCSHHHHHHHHTTC
T ss_pred             HHCCCE--EEcCCEEEEEECC--CCEEEECCCCEEECCEEEECCCC--CCCCCCccCCCCC-cEEEECCHHHHHHHHHHh
Confidence            455665  7889899999864  46788888888999999999999  8999988 88223 34443322211     11


Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFD  213 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  213 (396)
                      ..+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.. +|+.   .+         .         .+...        
T Consensus       143 ~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~~---~~---------~---------~~~~~--------  192 (408)
T 2gqw_A          143 RPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL-MSRA---AP---------A---------TLADF--------  192 (408)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS-STTT---SC---------H---------HHHHH--------
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc-cccc---cC---------H---------HHHHH--------
Confidence            24899999999999999999999999999999997632 1110   00         0         11111        


Q ss_pred             CCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCcccc
Q psy2343         214 GVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKL  291 (396)
Q Consensus       214 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~~~  291 (396)
                                             +.+.+.+..|+  ....|++++++.|++.||+++++|.||+|||++|+.++++...+
T Consensus       193 -----------------------l~~~l~~~GV~i~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl  249 (408)
T 2gqw_A          193 -----------------------VARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGL  249 (408)
T ss_dssp             -----------------------HHHHHHHTTCEEEESCCEEEEETTEEEETTSCEEECSEEEECSCEEECCHHHHHHTC
T ss_pred             -----------------------HHHHHHHcCcEEEeCCEEEEEECCEEEECCCCEEEcCEEEECcCCCccHHHHHhCCC
Confidence                                   11111112333  34567777755899999999999999999999999888876666


Q ss_pred             cccCCccccccccccCCCCcEEEEecccCcC----------chhhHHHHHHHHHHHHHhcccc
Q psy2343         292 EWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA----------GLGDGLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       292 ~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~----------~~~~~ae~qa~~~a~~l~~~~~  344 (396)
                      ..++ ++.+.++ +.++.|+||++||+....          ..+..|..||+.+|.++.|...
T Consensus       250 ~~~~-gi~Vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~  310 (408)
T 2gqw_A          250 ACDD-GIFVDAY-GRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTA  310 (408)
T ss_dssp             CBSS-SEECCTT-CBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTTS
T ss_pred             CCCC-CEEECCC-CccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCCC
Confidence            6654 4666654 578899999999997532          1567899999999999988643

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.89  E-value=4.2e-24  Score=215.21  Aligned_cols=238  Identities=15%  Similarity=0.149  Sum_probs=167.5

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc-cCc--EEEcCEEEEcccCCCCCCCCCCCCCccccee
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NGK--KKKYDFIAVCNGAQRVARYPNYSGYFSGEIL  123 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~-~g~--~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~  123 (396)
                      ..+.+.+|++++++++++.  ++++++|++|+++.+.+.+... ++.  ++.||+||||||+  .|+.|++||.....++
T Consensus        56 ~~~~~~~~~~~~~~~~~i~--~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~--~p~~p~ipG~~~~~v~  131 (565)
T 3ntd_A           56 RSALVLQTPESFKARFNVE--VRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA--APIVPPIPGVDNPLTH  131 (565)
T ss_dssp             GGGGBCCCHHHHHHHHCCE--EETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCCTTCCSTTEE
T ss_pred             hHHhhccCHHHHHHhcCcE--EEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCC--CCCCCCCCCCCCCCEE
Confidence            4556788999999999987  8899999999988777777652 243  6899999999999  8999999993222234


Q ss_pred             ecccCCCCC-------CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccCh
Q psy2343         124 HSMDYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK  196 (396)
Q Consensus       124 hs~~~~~~~-------~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~  196 (396)
                      +...+.+..       ...+|+|+|||+|.+|+|+|..+++.+.+|+++.|++.. +|..    +         .     
T Consensus       132 ~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~----~---------~-----  192 (565)
T 3ntd_A          132 SLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQV-MTPV----D---------R-----  192 (565)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS-CTTS----C---------H-----
T ss_pred             EeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCcc-chhc----C---------H-----
Confidence            433322211       235789999999999999999999999999999998632 1210    0         0     


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeC-----------------
Q psy2343         197 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG-----------------  257 (396)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~-----------------  257 (396)
                          .+...+.                               +.+....|+  ....|++++.                 
T Consensus       193 ----~~~~~l~-------------------------------~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~  237 (565)
T 3ntd_A          193 ----EMAGFAH-------------------------------QAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAH  237 (565)
T ss_dssp             ----HHHHHHH-------------------------------HHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTT
T ss_pred             ----HHHHHHH-------------------------------HHHHHCCCEEEeCCeEEEEecccccccccccccccccc
Confidence                1111111                               111111222  2234444432                 


Q ss_pred             ----C--eEEecCCcEecCcEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccC------c---
Q psy2343         258 ----N--IVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNA------A---  321 (396)
Q Consensus       258 ----~--~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~------~---  321 (396)
                          +  .++++||+++++|.||+|||++++.++++..++..+ ++.+.+.. .+.++.|+||++||+..      +   
T Consensus       238 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~g~~~  316 (565)
T 3ntd_A          238 QHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNA-MMQTSDPAIYAVGDAVEEQDFVTGQAC  316 (565)
T ss_dssp             CCTTCEEEEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCT-TCBCSSTTEEECGGGBCEEBTTTCCEE
T ss_pred             ccCCCcEEEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECC-CcccCCCCEEEeeeeEeeccccCCcee
Confidence                1  367789999999999999999999887765556554 35566654 45789999999999963      1   


Q ss_pred             -CchhhHHHHHHHHHHHHHhccc
Q psy2343         322 -AGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       322 -~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                       ...++.|..||+.+|.+|.|..
T Consensus       317 ~~~~~~~A~~~g~~aa~~i~g~~  339 (565)
T 3ntd_A          317 LVPLAGPANRQGRMAADNMFGRE  339 (565)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             ecccHHHHHHHHHHHHHHhcCCC
Confidence             1357789999999999998863

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.89  E-value=1.1e-23  Score=213.11  Aligned_cols=236  Identities=15%  Similarity=0.233  Sum_probs=174.2

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEcCEEEEcccCCCCCCCCCCCCC-cccce
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQRVARYPNYSGY-FSGEI  122 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~-~~g~--~~~~d~vvvAtG~~~~p~~P~~~g~-~~g~~  122 (396)
                      ..+.+..|++++++++++.  ++++++|++|+.+.+.+.+.. .++.  ++.||+||+|||+  .|..|+++|. -...+
T Consensus        91 ~~~~~~~~~~~~~~~~gi~--v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~~~~v  166 (588)
T 3ics_A           91 RQKLLVQTVERMSKRFNLD--IRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGA--KPIVPSIPGIEEAKAL  166 (588)
T ss_dssp             GGGGBSSCHHHHHHHTTCE--EECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCCTTTTTCTTE
T ss_pred             hHHhhccCHHHHHHhcCcE--EEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCC--CCCCCCCCCcccCCCe
Confidence            3456788999999999987  889999999998888777765 3454  5789999999998  8999999983 22335


Q ss_pred             eecccCCCCC-------CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccC
Q psy2343         123 LHSMDYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS  195 (396)
Q Consensus       123 ~hs~~~~~~~-------~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~  195 (396)
                      +++..+.+..       ...+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|..    +.             
T Consensus       167 ~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~----~~-------------  228 (588)
T 3ics_A          167 FTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQV-MPPI----DY-------------  228 (588)
T ss_dssp             EECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-CTTS----CH-------------
T ss_pred             EEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcc-cccC----CH-------------
Confidence            5544333221       245899999999999999999999999999999987632 1210    00             


Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--CeEEecCCcEecCc
Q psy2343         196 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NIVHFVDDTHIEVD  271 (396)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~v~~~dG~~~~~D  271 (396)
                           .+.+.                               +.+.+....|++  ...|++++.  +.|.++||+++++|
T Consensus       229 -----~~~~~-------------------------------l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D  272 (588)
T 3ics_A          229 -----EMAAY-------------------------------VHEHMKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTD  272 (588)
T ss_dssp             -----HHHHH-------------------------------HHHHHHHTTCEEECSCCEEEEEGGGTEEEETTSCEEECS
T ss_pred             -----HHHHH-------------------------------HHHHHHHcCCEEEECCeEEEEecCCCEEEECCCCEEEcC
Confidence                 11111                               111122223443  456777765  67999999999999


Q ss_pred             EEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccC------c----CchhhHHHHHHHHHHHHHh
Q psy2343         272 TIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNA------A----AGLGDGLRLQGQFIRSYIQ  340 (396)
Q Consensus       272 ~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~------~----~~~~~~ae~qa~~~a~~l~  340 (396)
                      .||+|||++++.++++..++..+ ++.+.+.+ .+.++.|+||++||+..      +    ...++.|..||+.+|.++.
T Consensus       273 ~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  351 (588)
T 3ics_A          273 MLILAIGVQPESSLAKGAGLALGVRGTIKVNE-KFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIH  351 (588)
T ss_dssp             EEEECSCEEECCHHHHHTTCCBCGGGCBCCCT-TSBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHT
T ss_pred             EEEEccCCCCChHHHHhcCceEcCCCCEEECC-ccccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhc
Confidence            99999999999888776666653 35555554 45789999999999973      1    2366789999999999999


Q ss_pred             c
Q psy2343         341 A  341 (396)
Q Consensus       341 ~  341 (396)
                      |
T Consensus       352 g  352 (588)
T 3ics_A          352 G  352 (588)
T ss_dssp             T
T ss_pred             C
Confidence            8

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=99.89  E-value=3.8e-23  Score=204.47  Aligned_cols=228  Identities=14%  Similarity=0.177  Sum_probs=160.5

Q ss_pred             HHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc-cCcEEEcCEEEEcccCCCCCCCCCCCC-C-------c---cccee
Q psy2343          56 RSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NGKKKKYDFIAVCNGAQRVARYPNYSG-Y-------F---SGEIL  123 (396)
Q Consensus        56 ~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~-~g~~~~~d~vvvAtG~~~~p~~P~~~g-~-------~---~g~~~  123 (396)
                      ...++++++.  ++++++|+.|+.+++.+.+... ++.++.||+||+|||.  .|..|++|| .       |   ...++
T Consensus        99 ~~~~~~~gv~--v~~~~~v~~i~~~~~~v~v~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~~~~~~~f~~~~~~v~  174 (490)
T 2bc0_A           99 KEELESLGAK--VYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGS--QPILPPIKGAEIKEGSLEFEATLENLQ  174 (490)
T ss_dssp             HHHHHHTTCE--EETTCCEEEEETTTTEEEEEETTEEEEEECSEEEECCCE--EECCCSCBTCCBCTTCTTCCBSSTTEE
T ss_pred             HHHHHhCCCE--EEeCCEEEEEECCCCEEEEEeCCcEEEEECCEEEECCCC--CcCCCCCCCccccccccccccccCCEE
Confidence            4445567776  7889999999887776666521 2346899999999998  899998888 4       1   22356


Q ss_pred             ecccCCCCC-------CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccCh
Q psy2343         124 HSMDYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK  196 (396)
Q Consensus       124 hs~~~~~~~-------~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~  196 (396)
                      +...+.+..       ...+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.. +|+                .+.. 
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~-l~~----------------~~~~-  236 (490)
T 2bc0_A          175 FVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTC-LAG----------------YYDR-  236 (490)
T ss_dssp             ECSSHHHHHHHHHHTTSTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST-TTT----------------TSCH-
T ss_pred             EeCCHHHHHHHHHHhhhcCCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccch-hhh----------------HHHH-
Confidence            544433221       146899999999999999999999999999999998632 111                0000 


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCe----EEecCCcEecC
Q psy2343         197 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNI----VHFVDDTHIEV  270 (396)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~----v~~~dG~~~~~  270 (396)
                          .+.+                               .+.+.+.+..|++  ...|+++++++    |.+ ||+++++
T Consensus       237 ----~~~~-------------------------------~l~~~l~~~GV~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~  280 (490)
T 2bc0_A          237 ----DLTD-------------------------------LMAKNMEEHGIQLAFGETVKEVAGNGKVEKIIT-DKNEYDV  280 (490)
T ss_dssp             ----HHHH-------------------------------HHHHHHHTTTCEEEETCCEEEEECSSSCCEEEE-SSCEEEC
T ss_pred             ----HHHH-------------------------------HHHHHHHhCCeEEEeCCEEEEEEcCCcEEEEEE-CCcEEEC
Confidence                1111                               1112222223443  45677776432    444 7888999


Q ss_pred             cEEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHH
Q psy2343         271 DTIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYI  339 (396)
Q Consensus       271 D~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l  339 (396)
                      |.||+|||++|+.++++.. +..+ ++.+.+.+. +.++.|+||++||+...          ...++.|..||+.+|.++
T Consensus       281 D~Vi~a~G~~p~~~ll~~~-l~~~~~G~I~Vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i  358 (490)
T 2bc0_A          281 DMVILAVGFRPNTTLGNGK-IDLFRNGAFLVNKR-QETSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNA  358 (490)
T ss_dssp             SEEEECCCEEECCGGGTTC-SCBCTTSCBCCCTT-CBCSSTTEEECGGGBCEEETTTTEEECCCCHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCcChHHHHhh-hccCCCCCEEECCC-cccCCCCEEEeeeeEEeccccCCceeecccHHHHHHHHHHHHHHh
Confidence            9999999999999988765 5553 355666554 57799999999999752          146788999999999999


Q ss_pred             hccc
Q psy2343         340 QAFI  343 (396)
Q Consensus       340 ~~~~  343 (396)
                      .|..
T Consensus       359 ~g~~  362 (490)
T 2bc0_A          359 CGTD  362 (490)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            8763

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.89  E-value=6.1e-24  Score=208.92  Aligned_cols=211  Identities=15%  Similarity=0.079  Sum_probs=150.0

Q ss_pred             CcEEEEEEEeCCeEEEEEccCcE--EEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCC---CCCCCCCeEEEEcCC
Q psy2343          71 NTEVINLEQYEDIWEVELSNGKK--KKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKS---PDQIRNKRVLVVGAG  145 (396)
Q Consensus        71 ~t~V~~v~~~~~~~~V~~~~g~~--~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~---~~~~~~k~VvVVG~G  145 (396)
                      ..+|..++  .+.+.|.+++|++  +.||+||+|||+  .|..|++||..  .++++.++..   .....+|+|+|||+|
T Consensus       108 ~g~v~~id--~~~~~V~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~--~~~t~~~~~~~~~~l~~~~~~vvViGgG  181 (466)
T 3l8k_A          108 KGYVKIKD--PTHVIVKTDEGKEIEAETRYMIIASGA--ETAKLRLPGVE--YCLTSDDIFGYKTSFRKLPQDMVIIGAG  181 (466)
T ss_dssp             SEEEEEEE--TTEEEEEETTSCEEEEEEEEEEECCCE--EECCCCCTTGG--GSBCHHHHHSTTCSCCSCCSEEEEECCS
T ss_pred             EeEEEEec--CCeEEEEcCCCcEEEEecCEEEECCCC--CccCCCCCCcc--ceEeHHHHHHHHHHHhhCCCeEEEECCC
Confidence            33566665  5688898888887  999999999998  89999999821  2455444431   222357999999999


Q ss_pred             CcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy2343         146 NSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHP  225 (396)
Q Consensus       146 ~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  225 (396)
                      .+|+|+|..+++.+.+|+++.|.+.. +|..                +..     .+.+.+.                  
T Consensus       182 ~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~----------------~d~-----~~~~~l~------------------  221 (466)
T 3l8k_A          182 YIGLEIASIFRLMGVQTHIIEMLDRA-LITL----------------EDQ-----DIVNTLL------------------  221 (466)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSS-CTTS----------------CCH-----HHHHHHH------------------
T ss_pred             HHHHHHHHHHHHcCCEEEEEEeCCcC-CCCC----------------CCH-----HHHHHHH------------------
Confidence            99999999999999999999997632 1110                000     1111111                  


Q ss_pred             CCcccCccCchhhhcccCCCeEecCCcceEeC---Ce--EEec--CCc--EecCcEEEEccCCCCCCCC-CCcccccccC
Q psy2343         226 LDAAHPIMNSQILYHIGHGDILPKDDIKNLNG---NI--VHFV--DDT--HIEVDTIIYATGYNRHFPF-IDKEKLEWKL  295 (396)
Q Consensus       226 ~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~---~~--v~~~--dG~--~~~~D~VI~aTG~~~~~~~-l~~~~~~~~~  295 (396)
                                   +.+. -++.....|+++++   +.  |.++  ||+  ++++|.||+|||++|+..+ ++...+..+.
T Consensus       222 -------------~~l~-v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~  287 (466)
T 3l8k_A          222 -------------SILK-LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISK  287 (466)
T ss_dssp             -------------HHHC-CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCS
T ss_pred             -------------hcCE-EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCC
Confidence                         1111 13333445666654   22  6676  676  6899999999999999884 5555666654


Q ss_pred             CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         296 GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       296 ~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      +++.+. ..+.++.|+||++||+.......+.|..||+.+|..+.+.
T Consensus       288 ~Gi~vd-~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~  333 (466)
T 3l8k_A          288 TGIVVD-ETMKTNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMAN  333 (466)
T ss_dssp             SSBCCC-TTCBCSSTTEEECGGGTCSCCSHHHHHHHHHHHHHHHHTT
T ss_pred             CCEeEC-CCccCCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHhCC
Confidence            445554 4557899999999999876677889999999999999875

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.89  E-value=9.3e-23  Score=199.77  Aligned_cols=234  Identities=13%  Similarity=0.170  Sum_probs=165.5

Q ss_pred             HHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc-cCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccC
Q psy2343          50 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY  128 (396)
Q Consensus        50 ~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~-~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~  128 (396)
                      ++..++...++++++.  ++++++|++++.+.+.|.++.. ++.++.||+||+|||+  .|..|+++|.....++++..+
T Consensus        59 ~~~~~~~~~~~~~gi~--~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~--~p~~p~i~g~~~~~v~~~~~~  134 (452)
T 3oc4_A           59 EARYITEEELRRQKIQ--LLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGA--SQFSTQIRGSQTEKLLKYKFL  134 (452)
T ss_dssp             --CCCCHHHHHHTTEE--EECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCC--CBCCCCCBTTTCTTEEEGGGC
T ss_pred             HhhcCCHHHHHHCCCE--EEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCc--ccCCCCCCCCCCCCEEEeCCH
Confidence            3333345555677775  7889999999988887877632 4556899999999999  899999999333456777666


Q ss_pred             CCCCCC-----CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343         129 KSPDQI-----RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI  203 (396)
Q Consensus       129 ~~~~~~-----~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  203 (396)
                      .+...+     .+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+... |+.                +..     .+.
T Consensus       135 ~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~----------------~d~-----~~~  192 (452)
T 3oc4_A          135 SGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLL-PKY----------------FDK-----EMV  192 (452)
T ss_dssp             C----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-TTT----------------CCH-----HHH
T ss_pred             HHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccc-ccc----------------CCH-----HHH
Confidence            555432     57999999999999999999999999999999986421 110                000     111


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEe--CCe--EEecCCcEecCcEEEEcc
Q psy2343         204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLN--GNI--VHFVDDTHIEVDTIIYAT  277 (396)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~--~~~--v~~~dG~~~~~D~VI~aT  277 (396)
                      +                               .+.+.+.+..|++  ...|++++  ++.  |.+.+| ++++|.||+||
T Consensus       193 ~-------------------------------~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~  240 (452)
T 3oc4_A          193 A-------------------------------EVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFAL  240 (452)
T ss_dssp             H-------------------------------HHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECS
T ss_pred             H-------------------------------HHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECc
Confidence            1                               1122222334544  45677776  233  566666 89999999999


Q ss_pred             CCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCcC----------chhhHHHHHHHHHHHHHhccc
Q psy2343         278 GYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAA----------GLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       278 G~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~----------~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      |++|+.++++.. +..+ ++.+.+.+ .+.++.|+||++||+....          ..++.|..||+.+|.++.|..
T Consensus       241 G~~p~~~~l~~~-~~~~~~g~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~  315 (452)
T 3oc4_A          241 NLHPQLAYLDKK-IQRNLDQTIAVDA-YLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKT  315 (452)
T ss_dssp             CCBCCCSSCCTT-SCBCTTSCBCCCT-TCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCC
T ss_pred             CCCCChHHHHhh-hccCCCCCEEECc-CccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCC
Confidence            999999988754 5543 45566654 4578999999999997532          367889999999999998763

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.89  E-value=3e-23  Score=203.98  Aligned_cols=272  Identities=17%  Similarity=0.188  Sum_probs=165.3

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe---CCeE--EEEEccCc----EEEcCEEEEcccCCCCCCCCC
Q psy2343          43 PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIW--EVELSNGK----KKKYDFIAVCNGAQRVARYPN  113 (396)
Q Consensus        43 ~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~---~~~~--~V~~~~g~----~~~~d~vvvAtG~~~~p~~P~  113 (396)
                      ..|+++.++.+|+++++++++..  ++++++|++|+++   ++.|  +|++.++.    ++.||+||+|||.  .|.+|.
T Consensus       121 ~~~~~~~~~~~~l~~~~~~~~~~--i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~--~p~~p~  196 (463)
T 3s5w_A          121 TFYPCRMEFNDYLRWVASHFQEQ--SRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGG--TPRIPQ  196 (463)
T ss_dssp             CSCCBHHHHHHHHHHHHTTCTTT--EEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC--EECCCG
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC--CCCCcc
Confidence            35778999999999999999866  9999999999987   5555  67766664    7899999999998  888886


Q ss_pred             CCCCccc--ceeecccCCCC-CCC-----CCCeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCceeecCCCCCCChh
Q psy2343         114 YSGYFSG--EILHSMDYKSP-DQI-----RNKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGYHYYPKFIDGKPTP  183 (396)
Q Consensus       114 ~~g~~~g--~~~hs~~~~~~-~~~-----~~k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~~~~p~~~~~~~~~  183 (396)
                      ....+.+  .++|+.++.+. ..+     ++|+|+|||+|.||+|+|.+|++.  +.+|+++.|++. ++|.........
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~-~~p~~~~~~~~~  275 (463)
T 3s5w_A          197 VFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASA-LKPADDSPFVNE  275 (463)
T ss_dssp             GGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSS-CCBCCCCHHHHG
T ss_pred             hhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCC-CcCccCCccchh
Confidence            3334555  78999887663 344     689999999999999999999998  899999999876 344321100000


Q ss_pred             H-------HHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCch-----hhhcc-cCCCeEec-
Q psy2343         184 Q-------WMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQ-----ILYHI-GHGDILPK-  249 (396)
Q Consensus       184 ~-------~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----~~~~i-~~g~i~~~-  249 (396)
                      .       .+..++...+.     .+.+.    ...  ..++..         .+.+.+.     +.+.+ ....|++. 
T Consensus       276 ~~~p~~~~~~~~l~~~~~~-----~~~~~----~~~--~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~v~i~~  335 (463)
T 3s5w_A          276 VFAPKFTDLIYSREHAERE-----RLLRE----YHN--TNYSVV---------DTDLIERIYGVFYRQKVSGIPRHAFRC  335 (463)
T ss_dssp             GGSHHHHHHHHHSCHHHHH-----HHHHH----TGG--GTSSCB---------CHHHHHHHHHHHHHHHHHCCCCSEEET
T ss_pred             ccChhHHHHHhcCCHHHHH-----HHHHH----hhc--cCCCcC---------CHHHHHHHHHHHHHHHhcCCCCeEEEe
Confidence            0       00011111100     11111    000  000000         0000000     11111 11344443 


Q ss_pred             -CCcceEeC--Ce--EEec---CCcE--ecCcEEEEccCCCCC--CCCCCcccccccCCccccccccccCC----CCcEE
Q psy2343         250 -DDIKNLNG--NI--VHFV---DDTH--IEVDTIIYATGYNRH--FPFIDKEKLEWKLGIPDLFIHIAPRN----LDNIF  313 (396)
Q Consensus       250 -~~i~~i~~--~~--v~~~---dG~~--~~~D~VI~aTG~~~~--~~~l~~~~~~~~~~~~~l~~~~~~~~----~p~l~  313 (396)
                       ..|++++.  +.  |.+.   +|+.  +++|.||+|||++++  .++|.......  +.+.+.+++....    .|+||
T Consensus       336 ~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~--g~i~v~~~~~~~~~~~~~~~If  413 (463)
T 3s5w_A          336 MTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL--GDHEIGRDYRLQTDERCKVAIY  413 (463)
T ss_dssp             TEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB--C--CCCTTSBCCBCTTBCSEEE
T ss_pred             CCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh--CCcccCcccccccCCCCCCeEE
Confidence             34666643  32  5665   7775  899999999999998  66776432221  4444444433222    57799


Q ss_pred             EEecccCc-----CchhhHHHHHHHHHHHHHhc
Q psy2343         314 FFGFVNAA-----AGLGDGLRLQGQFIRSYIQA  341 (396)
Q Consensus       314 ~iG~~~~~-----~~~~~~ae~qa~~~a~~l~~  341 (396)
                      ++|++...     ...-..+..+++.++..+..
T Consensus       414 a~G~~~~~~g~~~~~l~~~a~r~~~i~~~~~~~  446 (463)
T 3s5w_A          414 AQGFSQASHGLSDTLLSVLPVRAEEISGSLYQH  446 (463)
T ss_dssp             ESSCCHHHHCTTTTSSTTHHHHHHHHHHHHHHH
T ss_pred             EcCCCcccCCcCccchhHHHHHHHHHHHHHHhh
Confidence            99998631     12233455666655554433

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.89  E-value=1.1e-23  Score=207.39  Aligned_cols=235  Identities=18%  Similarity=0.223  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEcCEEEEcccCCCCCCCCCCCC-Ccccceeec
Q psy2343          50 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHS  125 (396)
Q Consensus        50 ~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~-~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs  125 (396)
                      ++..|++++++++++.  ++++++|++|++..+.+.+.. .+|.  .+.||+||+|||.  .|..|++|| ...+ +++.
T Consensus        67 ~~~~~~~~~~~~~gi~--~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~~~-v~~~  141 (472)
T 3iwa_A           67 NVVRDPEFFRINKDVE--ALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGS--KANRPPVEGMDLAG-VTPV  141 (472)
T ss_dssp             --------------CE--EECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE--EECCCSCTTTTSBT-EEEC
T ss_pred             hhccCHHHHhhhcCcE--EEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCC--CcCCCCCCCCCCCC-EEEe
Confidence            3678888888888887  889999999998877777765 2354  6899999999998  899999999 4433 4443


Q ss_pred             ccCCCCC-------CCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChH
Q psy2343         126 MDYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE  197 (396)
Q Consensus       126 ~~~~~~~-------~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~  197 (396)
                      ....+..       ...+++|+|||+|.+|+|+|..+++. +.+|+++.|.+.. +|+.   .+             .  
T Consensus       142 ~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~-l~~~---~~-------------~--  202 (472)
T 3iwa_A          142 TNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQI-MPGF---TS-------------K--  202 (472)
T ss_dssp             CSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSS-STTT---SC-------------H--
T ss_pred             CCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcc-cccc---cC-------------H--
Confidence            3322211       13478999999999999999999999 9999999987632 1110   00             0  


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC-C-e--EEecCCcEecCc
Q psy2343         198 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG-N-I--VHFVDDTHIEVD  271 (396)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~-~-~--v~~~dG~~~~~D  271 (396)
                         .+.+.                               +.+.+.+..|++  ...|++++. + .  |.+.||+++++|
T Consensus       203 ---~~~~~-------------------------------l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD  248 (472)
T 3iwa_A          203 ---SLSQM-------------------------------LRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDAD  248 (472)
T ss_dssp             ---HHHHH-------------------------------HHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECS
T ss_pred             ---HHHHH-------------------------------HHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcC
Confidence               11111                               111222223443  346777754 2 2  778899999999


Q ss_pred             EEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHHh
Q psy2343         272 TIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQ  340 (396)
Q Consensus       272 ~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l~  340 (396)
                      .||+|||++++.++++..++..+ ++.+.+... +.++.|+||++||+...          ...++.|..||+.+|.+|.
T Consensus       249 ~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  327 (472)
T 3iwa_A          249 LVILAAGVSPNTQLARDAGLELDPRGAIIVDTR-MRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLA  327 (472)
T ss_dssp             EEEECSCEEECCHHHHHHTCCBCTTCCEECCTT-CBCSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcCHHHHHhCCccCCCCCCEEECCC-cccCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhc
Confidence            99999999999877765555554 355665544 57889999999999731          1356789999999999998


Q ss_pred             ccc
Q psy2343         341 AFI  343 (396)
Q Consensus       341 ~~~  343 (396)
                      |..
T Consensus       328 g~~  330 (472)
T 3iwa_A          328 DGD  330 (472)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            763

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.89  E-value=4.8e-24  Score=205.92  Aligned_cols=228  Identities=12%  Similarity=0.082  Sum_probs=161.5

Q ss_pred             HHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCC
Q psy2343          53 DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSP  131 (396)
Q Consensus        53 ~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~  131 (396)
                      .+...+.+++++.  ++. ++|+.|++..+  .|++.+++++.||+||+|||.  .|+.|++|| ...+ +++.....+.
T Consensus        61 ~~~~~~~~~~~i~--~~~-~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~--~p~~~~i~g~~~~~-v~~~~~~~d~  132 (404)
T 3fg2_P           61 FRPEKFFQDQAIE--LIS-DRMVSIDREGR--KLLLASGTAIEYGHLVLATGA--RNRMLDVPNASLPD-VLYLRTLDES  132 (404)
T ss_dssp             SSCHHHHHHTTEE--EEC-CCEEEEETTTT--EEEESSSCEEECSEEEECCCE--EECCCCSTTTTSTT-EECCSSHHHH
T ss_pred             CCCHHHHHhCCCE--EEE-EEEEEEECCCC--EEEECCCCEEECCEEEEeeCC--CccCCCCCCCCCCc-EEEECCHHHH
Confidence            3344555667765  666 89999987544  677888888999999999998  899999988 4333 3322211111


Q ss_pred             -----CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHH
Q psy2343         132 -----DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQV  206 (396)
Q Consensus       132 -----~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  206 (396)
                           ....+++|+|||+|.+|+|+|..+.+.+.+|+++.+.+.+. ++                .+..     .+.+  
T Consensus       133 ~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~-~~----------------~~~~-----~~~~--  188 (404)
T 3fg2_P          133 EVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM-AR----------------VVTP-----EISS--  188 (404)
T ss_dssp             HHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT-TT----------------TSCH-----HHHH--
T ss_pred             HHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcch-hh----------------ccCH-----HHHH--
Confidence                 12258999999999999999999999999999999876321 10                0000     1111  


Q ss_pred             HHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC-----eEEecCCcEecCcEEEEccCC
Q psy2343         207 FKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVHFVDDTHIEVDTIIYATGY  279 (396)
Q Consensus       207 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~-----~v~~~dG~~~~~D~VI~aTG~  279 (396)
                                                   .+.+.+.+..|++  ...|++++++     +|.++||+++++|.||+|||+
T Consensus       189 -----------------------------~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~  239 (404)
T 3fg2_P          189 -----------------------------YFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGV  239 (404)
T ss_dssp             -----------------------------HHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCE
T ss_pred             -----------------------------HHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCC
Confidence                                         1112222223443  3467777542     588999999999999999999


Q ss_pred             CCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcCc----------hhhHHHHHHHHHHHHHhccc
Q psy2343         280 NRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG----------LGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       280 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~----------~~~~ae~qa~~~a~~l~~~~  343 (396)
                      +++.++++...+..+++ +.+... +.++.|+||++||+.....          .++.|..||+.+|++|.|..
T Consensus       240 ~p~~~l~~~~gl~~~~G-i~vd~~-~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~  311 (404)
T 3fg2_P          240 IPNVEIAAAAGLPTAAG-IIVDQQ-LLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDA  311 (404)
T ss_dssp             EECCHHHHHTTCCBSSS-EEECTT-SBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCC
T ss_pred             ccCHHHHHhCCCCCCCC-EEECCC-cccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCC
Confidence            99988887666666644 655544 4688999999999975322          37889999999999999864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.89  E-value=1.9e-22  Score=187.86  Aligned_cols=231  Identities=15%  Similarity=0.086  Sum_probs=158.3

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccceee
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILH  124 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~h  124 (396)
                      +..++.........++...  +..+..+.....  ....+...++++++||+||||||+  .|+.|++||  .+.+..++
T Consensus        60 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~liiAtGs--~~~~~~ipG~~~~~~~~v~  133 (312)
T 4gcm_A           60 TGPDLSTKMFEHAKKFGAV--YQYGDIKSVEDK--GEYKVINFGNKELTAKAVIIATGA--EYKKIGVPGEQELGGRGVS  133 (312)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EEECCCCEEEEC--SSCEEEECSSCEEEEEEEEECCCE--EECCCCCTTTTTTBTTTEE
T ss_pred             chHHHHHHHHHHHhhcccc--ccceeeeeeeee--ecceeeccCCeEEEeceeEEcccC--ccCcCCCCChhhhCCccEE
Confidence            5678888887777777654  555554444332  222344556777999999999998  899999999  56677777


Q ss_pred             cccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHH
Q psy2343         125 SMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK  204 (396)
Q Consensus       125 s~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  204 (396)
                      ++..++...+++|+|+|||+|.+|+|+|..+++.+.+|+++.|++... |..                        ....
T Consensus       134 ~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~-~~~------------------------~~~~  188 (312)
T 4gcm_A          134 YCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELR-AQR------------------------ILQD  188 (312)
T ss_dssp             SCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC-SCH------------------------HHHH
T ss_pred             eeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccC-cch------------------------hHHH
Confidence            777777777889999999999999999999999999999999986321 100                        0001


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecC-----CcceEe----CC-eEEec--CCcEecCcE
Q psy2343         205 QVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKD-----DIKNLN----GN-IVHFV--DDTHIEVDT  272 (396)
Q Consensus       205 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~-----~i~~i~----~~-~v~~~--dG~~~~~D~  272 (396)
                      ..+                                  ....+....     .+...+    .. .....  ++..+++|.
T Consensus       189 ~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  234 (312)
T 4gcm_A          189 RAF----------------------------------KNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADG  234 (312)
T ss_dssp             HHH----------------------------------HCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSE
T ss_pred             HHH----------------------------------HhcCcceeeecceeeeeccccccccceeeeecCCceeEEeeee
Confidence            101                                  000111100     000000    00 11112  334589999


Q ss_pred             EEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhccc
Q psy2343         273 IIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       273 VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      |++++|..++..++...++..+.+.+.+.+ .+.|+.|+||++||+... ..+...|..||+.+|..+...+
T Consensus       235 v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~-~~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L  305 (312)
T 4gcm_A          235 VFIYIGMKPLTAPFKDLGITNDVGYIVTKD-DMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYI  305 (312)
T ss_dssp             EEECSCEEESCGGGGGGTCBCTTSCBCCCT-TSBCSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecCCCcCchhHHhcceecCCCeEeeCC-CCccCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988887666655556666655 457899999999999753 3467788899999998886543

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.88  E-value=4.3e-22  Score=194.92  Aligned_cols=237  Identities=16%  Similarity=0.221  Sum_probs=160.6

Q ss_pred             CChHHHHHHH-HHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc-EEEcCEEEEcccCCCCCCCCCCCC-Ccccce
Q psy2343          46 PNHSMMLDYL-RSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGAQRVARYPNYSG-YFSGEI  122 (396)
Q Consensus        46 p~~~~~~~Yl-~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~-~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~  122 (396)
                      ...+++..+. +++++++++.  ++++++|+.++.  +.+.|.+.++. ++.||+||+|||.  .|+.|+++| ...+ +
T Consensus        55 ~~~~~~~~~~~~~~~~~~gi~--v~~~~~v~~i~~--~~~~v~~~~g~~~~~~d~lviAtG~--~p~~p~i~G~~~~~-v  127 (449)
T 3kd9_A           55 STPDKLMYYPPEVFIKKRGID--LHLNAEVIEVDT--GYVRVRENGGEKSYEWDYLVFANGA--SPQVPAIEGVNLKG-V  127 (449)
T ss_dssp             -----------CTHHHHTTCE--EETTCEEEEECS--SEEEEECSSSEEEEECSEEEECCCE--EECCCSCBTTTSTT-E
T ss_pred             CCHHHhhhcCHHHHHHhcCcE--EEecCEEEEEec--CCCEEEECCceEEEEcCEEEECCCC--CCCCCCCCCCCCCC-E
Confidence            3444555444 5555788887  899999999874  45778777773 6899999999998  899999998 4333 3


Q ss_pred             eecccCCC-------CCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccC
Q psy2343         123 LHSMDYKS-------PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSS  195 (396)
Q Consensus       123 ~hs~~~~~-------~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~  195 (396)
                      +......+       ...+.+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+... |.                .+..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~----------------~~~~  190 (449)
T 3kd9_A          128 FTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVL-RR----------------SFDK  190 (449)
T ss_dssp             ECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-TT----------------TSCH
T ss_pred             EEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc-hh----------------hcCH
Confidence            33222211       123478999999999999999999999999999999986321 11                0000


Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCC-CeEecCCcceEeCCe---EEecCCcEecCc
Q psy2343         196 KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHG-DILPKDDIKNLNGNI---VHFVDDTHIEVD  271 (396)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g-~i~~~~~i~~i~~~~---v~~~dG~~~~~D  271 (396)
                           .+..                               .+.+.+... ++.....+.+++++.   ..+.||+++++|
T Consensus       191 -----~~~~-------------------------------~l~~~l~~~v~i~~~~~v~~i~~~~~v~~v~~~g~~i~~D  234 (449)
T 3kd9_A          191 -----EVTD-------------------------------ILEEKLKKHVNLRLQEITMKIEGEERVEKVVTDAGEYKAE  234 (449)
T ss_dssp             -----HHHH-------------------------------HHHHHHTTTSEEEESCCEEEEECSSSCCEEEETTEEEECS
T ss_pred             -----HHHH-------------------------------HHHHHHHhCcEEEeCCeEEEEeccCcEEEEEeCCCEEECC
Confidence                 1111                               111222222 222345667776432   456788889999


Q ss_pred             EEEEccCCCCCCCCCCcccccccC-CccccccccccCCCCcEEEEecccC------c----CchhhHHHHHHHHHHHHHh
Q psy2343         272 TIIYATGYNRHFPFIDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNA------A----AGLGDGLRLQGQFIRSYIQ  340 (396)
Q Consensus       272 ~VI~aTG~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~------~----~~~~~~ae~qa~~~a~~l~  340 (396)
                      .||+|||++|+.++++...++.+. +.+.+.. .+.++.|+||++||+..      +    ...++.|..||+.+|.++.
T Consensus       235 ~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~  313 (449)
T 3kd9_A          235 LVILATGIKPNIELAKQLGVRIGETGAIWTNE-KMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIA  313 (449)
T ss_dssp             EEEECSCEEECCHHHHHTTCCBCTTSSBCCCT-TCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHT
T ss_pred             EEEEeeCCccCHHHHHhCCccCCCCCCEEECC-CCccCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhc
Confidence            999999999998887765666543 4465554 45789999999999963      1    2467789999999999998


Q ss_pred             ccc
Q psy2343         341 AFI  343 (396)
Q Consensus       341 ~~~  343 (396)
                      |..
T Consensus       314 g~~  316 (449)
T 3kd9_A          314 GKE  316 (449)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            863

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.87  E-value=3.8e-22  Score=195.57  Aligned_cols=228  Identities=13%  Similarity=0.139  Sum_probs=159.8

Q ss_pred             HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC-cEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCC
Q psy2343          51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYK  129 (396)
Q Consensus        51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g-~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~  129 (396)
                      +.+++...+++.++.  ++.++.+. +  +.+.+.|++.+| .++.||+||+|||+  .|..|+++|. ...++++.+..
T Consensus        93 l~~~~~~~~~~~gv~--~~~g~~~~-i--d~~~v~V~~~~G~~~i~~d~lViATGs--~p~~~~~~g~-~~~v~~~~~~~  164 (455)
T 1ebd_A           93 LTGGVEGLLKGNKVE--IVKGEAYF-V--DANTVRVVNGDSAQTYTFKNAIIATGS--RPIELPNFKF-SNRILDSTGAL  164 (455)
T ss_dssp             HHHHHHHHHHTTTCE--EEESEEEE-E--ETTEEEEEETTEEEEEECSEEEECCCE--EECCBTTBCC-CSSEECHHHHH
T ss_pred             HHHHHHHHHHhCCCE--EEEEEEEE-c--cCCeEEEEeCCCcEEEEeCEEEEecCC--CCCCCCCCCc-cceEecHHHHh
Confidence            455567777777876  77776543 4  367788888777 57899999999999  8888888872 12366665554


Q ss_pred             CCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHH
Q psy2343         130 SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKL  209 (396)
Q Consensus       130 ~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  209 (396)
                      .... .+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|.    .+         .         .+.+.+   
T Consensus       165 ~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~----~~---------~---------~~~~~l---  217 (455)
T 1ebd_A          165 NLGE-VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI-LSG----FE---------K---------QMAAII---  217 (455)
T ss_dssp             TCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS-STT----SC---------H---------HHHHHH---
T ss_pred             cccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc-ccc----cC---------H---------HHHHHH---
Confidence            4332 4799999999999999999999999999999997632 221    01         0         111111   


Q ss_pred             hcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--Ce--EEec---CCcEecCcEEEEccCCC
Q psy2343         210 AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NI--VHFV---DDTHIEVDTIIYATGYN  280 (396)
Q Consensus       210 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~--v~~~---dG~~~~~D~VI~aTG~~  280 (396)
                                                  .+.+.+..|++  ...|+++++  +.  +.+.   +|+.+++|.||+|||++
T Consensus       218 ----------------------------~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~  269 (455)
T 1ebd_A          218 ----------------------------KKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRR  269 (455)
T ss_dssp             ----------------------------HHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEE
T ss_pred             ----------------------------HHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCC
Confidence                                        11111113333  345666653  22  3443   45679999999999999


Q ss_pred             CCCCC--CCcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         281 RHFPF--IDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       281 ~~~~~--l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      |+.++  ++...+..+. +.+.+... +.++.|+||++||+.......+.|..||+.+|.++.+.
T Consensus       270 p~~~~l~~~~~g~~~~~~G~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~  333 (455)
T 1ebd_A          270 PNTDELGLEQIGIKMTNRGLIEVDQQ-CRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGH  333 (455)
T ss_dssp             ESCSSSSTTTTTCCBCTTSCBCCCTT-CBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSC
T ss_pred             cccCcCChhhcCCccCCCCCEeeCCC-cccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence            99888  4555565543 55666655 56899999999999876567788999999999999885

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.87  E-value=9.6e-23  Score=199.69  Aligned_cols=230  Identities=14%  Similarity=0.165  Sum_probs=162.4

Q ss_pred             HHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc-c--CcEEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCC
Q psy2343          54 YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-N--GKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYK  129 (396)
Q Consensus        54 Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~-~--g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~  129 (396)
                      ++...++++++.  ++++++|..|+.+++.+.+... +  +.++.||+||+|||+  .|..|+++| ... .++++..+.
T Consensus        63 ~~~~~~~~~gv~--~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs--~p~~p~i~g~~~~-~v~~~~~~~  137 (452)
T 2cdu_A           63 SSPEELSNLGAN--VQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGS--KPTVPPIPGIDSS-RVYLCKNYN  137 (452)
T ss_dssp             CCHHHHHHTTCE--EEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCCTTTTST-TEEECSSHH
T ss_pred             cCHHHHHHcCCE--EEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCC--CcCCCCCCCCCCC-CEEEeCcHH
Confidence            344555677876  8889999999877776666542 2  456899999999998  899999998 433 366655443


Q ss_pred             CCCC-----CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHH
Q psy2343         130 SPDQ-----IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK  204 (396)
Q Consensus       130 ~~~~-----~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  204 (396)
                      +...     ..+++|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|+                .+..     .+.+
T Consensus       138 ~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~----------------~~~~-----~~~~  195 (452)
T 2cdu_A          138 DAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERV-LYK----------------YFDK-----EFTD  195 (452)
T ss_dssp             HHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSST-TTT----------------TSCH-----HHHH
T ss_pred             HHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCch-hhh----------------hhhh-----hHHH
Confidence            3322     25799999999999999999999999999999987632 111                0000     1111


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeC--CeE--EecCCcEecCcEEEEccC
Q psy2343         205 QVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG--NIV--HFVDDTHIEVDTIIYATG  278 (396)
Q Consensus       205 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~--~~v--~~~dG~~~~~D~VI~aTG  278 (396)
                      .                               +.+.+++..|+  ....|++++.  +.+  ...||+++++|.||+|||
T Consensus       196 ~-------------------------------l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G  244 (452)
T 2cdu_A          196 I-------------------------------LAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIG  244 (452)
T ss_dssp             H-------------------------------HHHHHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             H-------------------------------HHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcC
Confidence            1                               11112122333  3456777753  333  334888899999999999


Q ss_pred             CCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHHhccc
Q psy2343         279 YNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       279 ~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      ++|+.++++.. +..+ ++.+.+.++ +.++.|+||++||+...          ...++.|..||+.+|.++.|..
T Consensus       245 ~~p~~~ll~~~-l~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  318 (452)
T 2cdu_A          245 FRPNTELLKGK-VAMLDNGAIITDEY-MHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDK  318 (452)
T ss_dssp             EEECCGGGTTT-SCBCTTSCBCCCTT-SBCSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred             CCCCHHHHHHh-hhcCCCCCEEECCC-cCcCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCC
Confidence            99999888765 6553 455666655 57899999999999753          1467899999999999998753

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.87  E-value=5.7e-23  Score=203.36  Aligned_cols=204  Identities=15%  Similarity=0.120  Sum_probs=142.2

Q ss_pred             CCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCCCCC-C--cccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHH
Q psy2343          81 EDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPNYSG-Y--FSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDA  155 (396)
Q Consensus        81 ~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~~~g-~--~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l  155 (396)
                      .+.+.|.+.+|  .++.||+||||||+  .|  |.+|| .  +.+..++++.........+|+|+|||+|.+|+|+|..+
T Consensus       142 ~~~~~v~~~~g~~~~~~~d~lViATGs--~p--~~ipg~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l  217 (491)
T 3urh_A          142 QGKVSVTNEKGEEQVLEAKNVVIATGS--DV--AGIPGVEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVW  217 (491)
T ss_dssp             SSEEEEECTTSCEEEEECSEEEECCCE--EC--CCBTTBCCCCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHH
T ss_pred             CCEEEEEeCCCceEEEEeCEEEEccCC--CC--CCCCCcccccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHH
Confidence            56778877776  46899999999998  44  45666 3  56655555554444455689999999999999999999


Q ss_pred             hcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCc
Q psy2343         156 SHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNS  235 (396)
Q Consensus       156 ~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  235 (396)
                      ++.+.+|+++.+.+.. +|.    .+.                  .+.+                               
T Consensus       218 ~~~g~~Vtlv~~~~~~-l~~----~d~------------------~~~~-------------------------------  243 (491)
T 3urh_A          218 ARLGAKVTVVEFLDTI-LGG----MDG------------------EVAK-------------------------------  243 (491)
T ss_dssp             HHHTCEEEEECSSSSS-SSS----SCH------------------HHHH-------------------------------
T ss_pred             HHcCCEEEEEeccccc-ccc----CCH------------------HHHH-------------------------------
Confidence            9999999999987632 111    010                  1111                               


Q ss_pred             hhhhcccCCCeEec--CCcceEeC--C--eEEecC---C--cEecCcEEEEccCCCCCCCCC--Cccccccc-CCccccc
Q psy2343         236 QILYHIGHGDILPK--DDIKNLNG--N--IVHFVD---D--THIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLF  301 (396)
Q Consensus       236 ~~~~~i~~g~i~~~--~~i~~i~~--~--~v~~~d---G--~~~~~D~VI~aTG~~~~~~~l--~~~~~~~~-~~~~~l~  301 (396)
                      .+.+.+.+..|++.  ..+++++.  +  .|.+.+   |  +.+++|.||+|||++|+.++|  ....+..+ ++.+.+.
T Consensus       244 ~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd  323 (491)
T 3urh_A          244 QLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEID  323 (491)
T ss_dssp             HHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCC
T ss_pred             HHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeEC
Confidence            11122222234433  34555542  2  255653   5  468999999999999998875  33445554 3456665


Q ss_pred             cccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343         302 IHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       302 ~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      +. +.++.|+||++||+.......+.|..||+.+|..+.|..
T Consensus       324 ~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~  364 (491)
T 3urh_A          324 RH-FQTSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQA  364 (491)
T ss_dssp             TT-CBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTSC
T ss_pred             CC-CCCCCCCEEEEEecCCCccchhHHHHHHHHHHHHHcCCC
Confidence            54 578999999999998666778899999999999998863

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.87  E-value=5.8e-22  Score=195.12  Aligned_cols=229  Identities=16%  Similarity=0.108  Sum_probs=161.0

Q ss_pred             HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccC
Q psy2343          51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY  128 (396)
Q Consensus        51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~  128 (396)
                      +.+++...+++.++.  +++++.+. +  +.+.|.|++.+|  .++.||+||+|||+  .|..|+++|.....++++.+.
T Consensus        98 l~~~~~~~~~~~gv~--~~~g~~~~-~--~~~~~~v~~~~G~~~~i~~d~lIiAtGs--~p~~p~~~g~~~~~v~~~~~~  170 (470)
T 1dxl_A           98 LTRGIEGLFKKNKVT--YVKGYGKF-V--SPSEISVDTIEGENTVVKGKHIIIATGS--DVKSLPGVTIDEKKIVSSTGA  170 (470)
T ss_dssp             HHHHHHHHHHHHTCE--EEESCEEE-E--ETTEEEECCSSSCCEEEECSEEEECCCE--EECCBTTBCCCSSSEECHHHH
T ss_pred             HHHHHHHHHHhCCCE--EEEeEEEE-e--cCCEEEEEeCCCceEEEEcCEEEECCCC--CCCCCCCCCCCcccEEeHHHh
Confidence            344456667777876  77887654 3  356788887777  67899999999999  888888888211246676665


Q ss_pred             CCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHH
Q psy2343         129 KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFK  208 (396)
Q Consensus       129 ~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  208 (396)
                      ..... .+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.. +|..    +         .         .+.+.+  
T Consensus       171 ~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~-l~~~----~---------~---------~~~~~l--  224 (470)
T 1dxl_A          171 LALSE-IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI-VPTM----D---------A---------EIRKQF--  224 (470)
T ss_dssp             TTCSS-CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS-STTS----C---------H---------HHHHHH--
T ss_pred             hhhhh-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcc-cccc----c---------H---------HHHHHH--
Confidence            54433 4799999999999999999999999999999998632 1210    0         0         111111  


Q ss_pred             HhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC----eEEec---CC--cEecCcEEEEcc
Q psy2343         209 LAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFV---DD--THIEVDTIIYAT  277 (396)
Q Consensus       209 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~~~---dG--~~~~~D~VI~aT  277 (396)
                                                   .+.+.+..|++  ...|.+++++    .|.+.   ||  +.+++|.||+|+
T Consensus       225 -----------------------------~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~  275 (470)
T 1dxl_A          225 -----------------------------QRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  275 (470)
T ss_dssp             -----------------------------HHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             -----------------------------HHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECC
Confidence                                         11111122333  3356666543    24454   55  568999999999


Q ss_pred             CCCCCCCC--CCcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         278 GYNRHFPF--IDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       278 G~~~~~~~--l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      |++|+..+  ++...+..++ +.+.+... +.++.|+||++||+.......+.|..||+.+|..+.|.
T Consensus       276 G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~  342 (470)
T 1dxl_A          276 GRTPFTSGLNLDKIGVETDKLGRILVNER-FSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGK  342 (470)
T ss_dssp             CEEECCTTSCCTTTTCCBCSSSCBCCCTT-CBCSSTTEEECSTTSSSCCCHHHHHHHHHHHHHHHTTS
T ss_pred             CCCcCCCCCCchhcCCccCCCCCEeECcC-CccCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence            99999887  5555566543 55766655 56899999999999876567788999999999999875

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.87  E-value=4e-22  Score=198.65  Aligned_cols=239  Identities=14%  Similarity=0.107  Sum_probs=169.9

Q ss_pred             CCCCCCCCChHHHHHHHHH-------HH-----HHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343          39 PDNYPVYPNHSMMLDYLRS-------YA-----KKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        39 p~~~~~~p~~~~~~~Yl~~-------~~-----~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      +.....+++.+++.+++..       +.     ++.++.  ++++.+|+.++.    ++|.+. +.++.||+||+|||+ 
T Consensus       113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~----~~v~~~-g~~~~~d~lViATGs-  184 (523)
T 1mo9_A          113 PDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLE--YILNCPAKVIDN----HTVEAA-GKVFKAKNLILAVGA-  184 (523)
T ss_dssp             CCCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCC--EEESSCCEEEET----TEEEET-TEEEEBSCEEECCCE-
T ss_pred             HHHHhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcE--EEEeeEEEEeeC----CEEEEC-CEEEEeCEEEECCCC-
Confidence            4444456678888888864       33     566775  665778877763    356665 667899999999998 


Q ss_pred             CCCCCCCCCC-CcccceeecccCC-CCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhH
Q psy2343         107 RVARYPNYSG-YFSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQ  184 (396)
Q Consensus       107 ~~p~~P~~~g-~~~g~~~hs~~~~-~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~  184 (396)
                       .|..|+++| ... .++++.++. ......+|+|+|||+|.+|+|+|..+++.+.+|+++.+.+.. +|.    .+.  
T Consensus       185 -~p~~p~i~G~~~~-~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~-l~~----~~~--  255 (523)
T 1mo9_A          185 -GPGTLDVPGVNAK-GVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL-KLI----KDN--  255 (523)
T ss_dssp             -ECCCCCSTTTTSB-TEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT-TTC----CSH--
T ss_pred             -CCCCCCCCCcccC-cEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc-ccc----ccH--
Confidence             899999998 332 366766665 444455699999999999999999999999999999987631 111    010  


Q ss_pred             HHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--C--
Q psy2343         185 WMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--N--  258 (396)
Q Consensus       185 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~--  258 (396)
                                      .+.+.                               +.+.+.+..|++  ...|++++.  +  
T Consensus       256 ----------------~~~~~-------------------------------l~~~l~~~GV~i~~~~~V~~i~~~~~~~  288 (523)
T 1mo9_A          256 ----------------ETRAY-------------------------------VLDRMKEQGMEIISGSNVTRIEEDANGR  288 (523)
T ss_dssp             ----------------HHHHH-------------------------------HHHHHHHTTCEEESSCEEEEEEECTTSB
T ss_pred             ----------------HHHHH-------------------------------HHHHHHhCCcEEEECCEEEEEEEcCCCc
Confidence                            11111                               111111123333  334666643  2  


Q ss_pred             ----eEEecCCc-EecCcEEEEccCCCCCCC-CCCccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHH
Q psy2343         259 ----IVHFVDDT-HIEVDTIIYATGYNRHFP-FIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQ  331 (396)
Q Consensus       259 ----~v~~~dG~-~~~~D~VI~aTG~~~~~~-~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~q  331 (396)
                          .|.+.||+ ++++|.||+|||++|+.. +++..+++.+ ++.+.+.+. +.++.|+||++||+.......+.|..|
T Consensus       289 v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~  367 (523)
T 1mo9_A          289 VQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEY-LQTSVPNVYAVGDLIGGPMEMFKARKS  367 (523)
T ss_dssp             EEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTT-SBCSSTTEEECGGGGCSSCSHHHHHHH
T ss_pred             eEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCC-CccCCCCEEEEeecCCCcccHHHHHHH
Confidence                36677887 799999999999999987 6776666654 455666554 568999999999998766678899999


Q ss_pred             HHHHHHHHhcc
Q psy2343         332 GQFIRSYIQAF  342 (396)
Q Consensus       332 a~~~a~~l~~~  342 (396)
                      |+.+|.++.|.
T Consensus       368 g~~aa~~i~g~  378 (523)
T 1mo9_A          368 GCYAARNVMGE  378 (523)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHcCC
Confidence            99999999874

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.87  E-value=9.5e-22  Score=194.93  Aligned_cols=230  Identities=12%  Similarity=0.069  Sum_probs=163.2

Q ss_pred             HHHHHHHHHHHcCCCCceEeCcEEEEEEEe----CCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCC-Cccccee
Q psy2343          51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQY----EDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEIL  123 (396)
Q Consensus        51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~----~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~  123 (396)
                      +..++..+++++++.  ++.++ ++.++..    ++.+.|.+++|+  .+.||+||+|||.  .|..|+++| ... .++
T Consensus        97 ~~~~~~~~~~~~gv~--~~~g~-~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs--~p~~p~i~g~~~~-~v~  170 (499)
T 1xdi_A           97 QSADITAQLLSMGVQ--VIAGR-GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGA--SPRILPSAQPDGE-RIL  170 (499)
T ss_dssp             HHHHHHHHHHHTTCE--EEESE-EEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCE--EECCCGGGCCCSS-SEE
T ss_pred             HHHHHHHHHHhCCCE--EEEeE-EEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCC--CCCCCCCCCCCcC-cEE
Confidence            334456777777876  66664 6666542    256777777776  6899999999998  889888888 322 366


Q ss_pred             ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHH
Q psy2343         124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYI  203 (396)
Q Consensus       124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  203 (396)
                      ++.+...... .+++|+|||+|.+|+|+|..+.+.+.+|+++.|.+.. +|.    .+.                  .+.
T Consensus       171 ~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~-l~~----~d~------------------~~~  226 (499)
T 1xdi_A          171 TWRQLYDLDA-LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHV-LPY----EDA------------------DAA  226 (499)
T ss_dssp             EGGGGGGCSS-CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSS-SCC----SSH------------------HHH
T ss_pred             ehhHhhhhhc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc-ccc----cCH------------------HHH
Confidence            7666555433 4689999999999999999999999999999987632 121    010                  111


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC----eEEecCCcEecCcEEEEcc
Q psy2343         204 KQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFVDDTHIEVDTIIYAT  277 (396)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~~~dG~~~~~D~VI~aT  277 (396)
                      ..                               +.+.+....|++  ...|++++.+    .|.+.||+++++|.||+|+
T Consensus       227 ~~-------------------------------l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~  275 (499)
T 1xdi_A          227 LV-------------------------------LEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTI  275 (499)
T ss_dssp             HH-------------------------------HHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECC
T ss_pred             HH-------------------------------HHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECC
Confidence            11                               111111123333  3456666532    2556788889999999999


Q ss_pred             CCCCCCCC--CCcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         278 GYNRHFPF--IDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       278 G~~~~~~~--l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      |++|+.++  ++..+++.+. +.+.+.+. +.++.|+||++||+.......+.|..||+.+|..+.|.
T Consensus       276 G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~  342 (499)
T 1xdi_A          276 GSVPNTSGLGLERVGIQLGRGNYLTVDRV-SRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGE  342 (499)
T ss_dssp             CEEECCSSSCTTTTTCCCBTTTBCCCCSS-SBCSSTTEEECSGGGTSCSCHHHHHHHHHHHHHHHTTC
T ss_pred             CCCcCCCcCCchhcCceECCCCCEEECCC-cccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence            99999988  5555566554 55666655 57899999999999876567788999999999999986

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.87  E-value=8.7e-22  Score=194.03  Aligned_cols=226  Identities=12%  Similarity=0.027  Sum_probs=156.6

Q ss_pred             HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc-C-cEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCC
Q psy2343          55 LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN-G-KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPD  132 (396)
Q Consensus        55 l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~-g-~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~  132 (396)
                      +..++++.++.  +++++. ..+  +.+.|.|++.+ + +++.||+||+|||+  .|..|+++|.....++|+.++....
T Consensus       103 ~~~~~~~~gv~--~~~g~~-~~~--~~~~~~v~~~~gg~~~~~~d~lViAtGs--~p~~p~i~g~~~~~v~t~~~~~~~~  175 (474)
T 1zmd_A          103 IAHLFKQNKVV--HVNGYG-KIT--GKNQVTATKADGGTQVIDTKNILIATGS--EVTPFPGITIDEDTIVSSTGALSLK  175 (474)
T ss_dssp             HHHHHHHTTCE--EEESEE-EEE--ETTEEEEECTTSCEEEEEEEEEEECCCE--EECCCTTCCCCSSSEECHHHHTTCS
T ss_pred             HHHHHHhCCCE--EEEEEE-EEe--cCCEEEEEecCCCcEEEEeCEEEECCCC--CCCCCCCCCCCcCcEEcHHHHhhcc
Confidence            35566667776  666653 334  36778888776 4 46899999999999  8898988882122367777665543


Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGF  212 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  212 (396)
                      . .+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|+.   .+         .         .+.+.       
T Consensus       176 ~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~~---~~---------~---------~~~~~-------  225 (474)
T 1zmd_A          176 K-VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHV-GGVG---ID---------M---------EISKN-------  225 (474)
T ss_dssp             S-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-SCSS---CC---------H---------HHHHH-------
T ss_pred             c-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCcc-CCcc---cC---------H---------HHHHH-------
Confidence            3 4689999999999999999999999999999998632 2210   01         0         11111       


Q ss_pred             CCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC--e-EEe-------cCCcEecCcEEEEccCCC
Q psy2343         213 DGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN--I-VHF-------VDDTHIEVDTIIYATGYN  280 (396)
Q Consensus       213 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~--~-v~~-------~dG~~~~~D~VI~aTG~~  280 (396)
                                              +.+.+.+..|++  ...|++++.+  + +.+       .+|+++++|.||+|+|++
T Consensus       226 ------------------------l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~  281 (474)
T 1zmd_A          226 ------------------------FQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRR  281 (474)
T ss_dssp             ------------------------HHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEE
T ss_pred             ------------------------HHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCC
Confidence                                    111111123343  2346666432  2 332       356679999999999999


Q ss_pred             CCCCCC--Cccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         281 RHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       281 ~~~~~l--~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      |+.++|  +...+..+ .+.+.+.+. +.++.|+||++||+.......+.|..||+.+|.++.+.
T Consensus       282 p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~  345 (474)
T 1zmd_A          282 PFTKNLGLEELGIELDPRGRIPVNTR-FQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGG  345 (474)
T ss_dssp             ECCTTSSHHHHTCCCCTTSCCCCCTT-CBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCcCCchhcCCccCCCCCEEECcC-CccCCCCEEEeeecCCCCccHHHHHHHHHHHHHHhcCC
Confidence            998874  34445554 355666665 46899999999999876667789999999999999886

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.87  E-value=1.7e-21  Score=180.84  Aligned_cols=230  Identities=14%  Similarity=0.165  Sum_probs=163.2

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Cccccee
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEIL  123 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~  123 (396)
                      +.+++.+.....+.+++..  ..++.+|..+... ++.|+|.+.+++++.||+||||||+  .|+.|++||  .+.+..+
T Consensus        58 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs--~p~~p~i~G~~~~~~~~v  133 (304)
T 4fk1_A           58 KPEEFKEIGLNEVMKYPSV--HYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGM--QEEFPSIPNVREYYGKSL  133 (304)
T ss_dssp             CHHHHHHHHHHHHTTSTTE--EEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCC--EEECCSCTTHHHHBTTTE
T ss_pred             CHHHHHHHHHHHHHhcCCE--EEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCC--ccccccccCcccccccee
Confidence            4678888877777776543  3445566676664 6779999999999999999999999  899999999  5666666


Q ss_pred             ecccCCCCCCCCCCeEEEEcCCCcH-HHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHH
Q psy2343         124 HSMDYKSPDQIRNKRVLVVGAGNSG-CDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY  202 (396)
Q Consensus       124 hs~~~~~~~~~~~k~VvVVG~G~sa-~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~  202 (396)
                      +.+...+...+++++++|||+|..+ .++|..+.+.+++|+++.|....                      ..     .+
T Consensus       134 ~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~----------------------~~-----~~  186 (304)
T 4fk1_A          134 FSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNEL----------------------SQ-----TI  186 (304)
T ss_dssp             ESCHHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCC----------------------CH-----HH
T ss_pred             eeccccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccc----------------------hh-----hh
Confidence            6666666667789999999999764 67777777788999998876421                      00     11


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe-cCCcceEeC-----CeEEecCCcEecCcEEEEc
Q psy2343         203 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-KDDIKNLNG-----NIVHFVDDTHIEVDTIIYA  276 (396)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~-~~~i~~i~~-----~~v~~~dG~~~~~D~VI~a  276 (396)
                      .+.+.                                   ...+.+ ...++.+.+     ..|.+.||+.+++|.+|++
T Consensus       187 ~~~l~-----------------------------------~~g~~~~~~~v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~  231 (304)
T 4fk1_A          187 MDELS-----------------------------------NKNIPVITESIRTLQGEGGYLKKVEFHSGLRIERAGGFIV  231 (304)
T ss_dssp             HHHHH-----------------------------------TTTCCEECSCEEEEESGGGCCCEEEETTSCEECCCEEEEC
T ss_pred             hhhhh-----------------------------------ccceeEeeeeEEEeecCCCeeeeeeccccceeeecceeee
Confidence            11111                                   011111 112333332     3588999999999999999


Q ss_pred             cCCCCCCCCCCcccccccC-CccccccccccCCCCcEEEEecccCcC-chhhHHHHHHHHHHHHHhccc
Q psy2343         277 TGYNRHFPFIDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       277 TG~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~-~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      +|..++..++...+++.+. +.+.+.+ .+.|+.|+||++||+...+ .++..|..|++.+|..+...+
T Consensus       232 ~g~~~~~~~~~~~g~~~~~~G~I~vd~-~~~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L  299 (304)
T 4fk1_A          232 PTFFRPNQFIEQLGCELQSNGTFVIDD-FGRTSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAINSDI  299 (304)
T ss_dssp             CEEECSSCHHHHTTCCCCTTSSSCSST-TCBCSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eccccCChhhhhcCeEECCCCCEEECc-CCccCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            9888777777766666644 4465554 4589999999999997432 346678889999888776543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.87  E-value=3.4e-21  Score=189.31  Aligned_cols=227  Identities=15%  Similarity=0.157  Sum_probs=158.3

Q ss_pred             HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccC
Q psy2343          51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDY  128 (396)
Q Consensus        51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~  128 (396)
                      +.+++...+++.++.  +++++.+. +  +.+.++|.+.+|  .++.||+||+|||+  .|..|+++|. ...++++.+.
T Consensus        93 l~~~l~~~~~~~gv~--~~~g~~~~-i--d~~~v~V~~~~G~~~~~~~d~lViAtG~--~~~~~~~~g~-~~~~~~~~~~  164 (464)
T 2a8x_A           93 RVAGVHFLMKKNKIT--EIHGYGTF-A--DANTLLVDLNDGGTESVTFDNAIIATGS--STRLVPGTSL-SANVVTYEEQ  164 (464)
T ss_dssp             HHHHHHHHHHHTTCE--EECEEEEE-S--SSSEEEEEETTSCCEEEEEEEEEECCCE--EECCCTTCCC-BTTEECHHHH
T ss_pred             HHHHHHHHHHhCCCE--EEEeEEEE-e--cCCeEEEEeCCCceEEEEcCEEEECCCC--CCCCCCCCCC-CceEEecHHH
Confidence            444566777777776  66666543 2  456788888777  67899999999999  7888888872 1236666555


Q ss_pred             CCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHH
Q psy2343         129 KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFK  208 (396)
Q Consensus       129 ~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  208 (396)
                      ..... .+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+. ++|..    +         ..+..     .+.+.   
T Consensus       165 ~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~~----~---------~~~~~-----~l~~~---  221 (464)
T 2a8x_A          165 ILSRE-LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPR-ALPNE----D---------ADVSK-----EIEKQ---  221 (464)
T ss_dssp             HTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-SSTTS----C---------HHHHH-----HHHHH---
T ss_pred             hhccc-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCc-ccccc----C---------HHHHH-----HHHHH---
Confidence            44332 478999999999999999999999999999999863 22211    1         00000     11111   


Q ss_pred             HhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC----eEEec-CC--cEecCcEEEEccCC
Q psy2343         209 LAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFV-DD--THIEVDTIIYATGY  279 (396)
Q Consensus       209 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~~~-dG--~~~~~D~VI~aTG~  279 (396)
                                                      +....|++  ...|++++++    .+.+. ||  +.+++|.||+|||+
T Consensus       222 --------------------------------l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~  269 (464)
T 2a8x_A          222 --------------------------------FKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGF  269 (464)
T ss_dssp             --------------------------------HHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCE
T ss_pred             --------------------------------HHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCC
Confidence                                            11112333  3456666532    24454 67  56899999999999


Q ss_pred             CCCCCCC--CcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhc
Q psy2343         280 NRHFPFI--DKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA  341 (396)
Q Consensus       280 ~~~~~~l--~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~  341 (396)
                      +|+..+|  +...+..++ +.+.+.++ +.++.|+||++||+.......+.|..||+.+|.++.|
T Consensus       270 ~p~~~~l~~~~~gl~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g  333 (464)
T 2a8x_A          270 APNVEGYGLDKAGVALTDRKAIGVDDY-MRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAG  333 (464)
T ss_dssp             EECCSSSCHHHHTCCBCTTSSBCCCTT-SBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHHT
T ss_pred             CccCCCCCchhcCCccCCCCCEeECcC-CccCCCCEEEeECcCCCccCHHHHHHHHHHHHHHhcC
Confidence            9998884  444455543 55776665 4689999999999987666778899999999999998

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.87  E-value=2.9e-22  Score=195.98  Aligned_cols=233  Identities=17%  Similarity=0.185  Sum_probs=162.8

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEcCEEEEcccCCCCCCCCCCCC-Ccccceee
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILH  124 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~-~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~h  124 (396)
                      +++..++...++++++.  ++++++|+.|+.+.+.+.+.. .+|+  ++.||+||+|||+  .|..|++|| ...+ ++|
T Consensus        56 ~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~~~-v~~  130 (447)
T 1nhp_A           56 NSVRYMTGEKMESRGVN--VFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA--VPFELDIPGKDLDN-IYL  130 (447)
T ss_dssp             GGSBSCCHHHHHHTTCE--EEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCSTTTTSBS-EEC
T ss_pred             HHhhcCCHHHHHHCCCE--EEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCC--CcCCCCCCCCCCCC-eEE
Confidence            34444445556677876  788999999987777666654 3354  3789999999998  899999999 4433 666


Q ss_pred             cccCCCCC-------CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChH
Q psy2343         125 SMDYKSPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE  197 (396)
Q Consensus       125 s~~~~~~~-------~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~  197 (396)
                      +.++.+..       ...+++|+|||+|.+|+|+|..+++.+.+|+++.+.+.. +|+.                +..  
T Consensus       131 ~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~----------------~~~--  191 (447)
T 1nhp_A          131 MRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP-LGVY----------------LDK--  191 (447)
T ss_dssp             CCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST-TTTT----------------CCH--
T ss_pred             ECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccc-cccc----------------CCH--
Confidence            54443221       126899999999999999999999999999999987631 1110                000  


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCe----EEecCCcEecCc
Q psy2343         198 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNI----VHFVDDTHIEVD  271 (396)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~----v~~~dG~~~~~D  271 (396)
                         .+.+                               .+.+.+.+..|++  ...|++++.++    |.+ +|+.+++|
T Consensus       192 ---~~~~-------------------------------~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d  236 (447)
T 1nhp_A          192 ---EFTD-------------------------------VLTEEMEANNITIATGETVERYEGDGRVQKVVT-DKNAYDAD  236 (447)
T ss_dssp             ---HHHH-------------------------------HHHHHHHTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECS
T ss_pred             ---HHHH-------------------------------HHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECC
Confidence               1111                               1122222234554  34677776432    444 67789999


Q ss_pred             EEEEccCCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHHh
Q psy2343         272 TIIYATGYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQ  340 (396)
Q Consensus       272 ~VI~aTG~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l~  340 (396)
                      .||+|||++|+.++++.. ++.+ ++.+.+... +.++.|+||++||+...          ...++.|..||+.+|.++.
T Consensus       237 ~vi~a~G~~p~~~~~~~~-~~~~~~G~i~Vd~~-~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~  314 (447)
T 1nhp_A          237 LVVVAVGVRPNTAWLKGT-LELHPNGLIKTDEY-MRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLE  314 (447)
T ss_dssp             EEEECSCEEESCGGGTTT-SCBCTTSCBCCCTT-CBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred             EEEECcCCCCChHHHHhh-hhhcCCCcEEECcc-ccCCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhc
Confidence            999999999998888765 5553 345666555 57889999999999752          1357889999999999998


Q ss_pred             cc
Q psy2343         341 AF  342 (396)
Q Consensus       341 ~~  342 (396)
                      |.
T Consensus       315 g~  316 (447)
T 1nhp_A          315 EP  316 (447)
T ss_dssp             SC
T ss_pred             CC
Confidence            75

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.86  E-value=3.5e-22  Score=197.08  Aligned_cols=229  Identities=15%  Similarity=0.225  Sum_probs=160.0

Q ss_pred             HHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCC
Q psy2343          54 YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYK  129 (396)
Q Consensus        54 Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~-~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~  129 (396)
                      +.+.+.+++++.  ++++++|+.|+.+.+.+.+.. .+|+  ++.||+||+|||+  .|+.|+++| ...+ +++...+.
T Consensus        98 ~~~~~~~~~gv~--~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~~~-v~~~~~~~  172 (480)
T 3cgb_A           98 NVKTFRDKYGID--AKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGV--RPVMPEWEGRDLQG-VHLLKTIP  172 (480)
T ss_dssp             CHHHHHHTTCCE--EESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCCBTTTSBT-EECCSSHH
T ss_pred             CHHHHHhhcCCE--EEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCC--cccCCCCCCccCCC-EEEeCCHH
Confidence            345555677876  888999999998777777765 3465  6899999999998  899999998 4333 55543332


Q ss_pred             CCC-------CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHH
Q psy2343         130 SPD-------QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAY  202 (396)
Q Consensus       130 ~~~-------~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~  202 (396)
                      +..       ...+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|.    .+         .         .+
T Consensus       173 ~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~----~~---------~---------~~  229 (480)
T 3cgb_A          173 DAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHI-GTI----YD---------G---------DM  229 (480)
T ss_dssp             HHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGT-TSS----SC---------H---------HH
T ss_pred             HHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCch-hhc----CC---------H---------HH
Confidence            221       126899999999999999999999999999999987631 110    00         0         11


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCe-E--EecCCcEecCcEEEEcc
Q psy2343         203 IKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNI-V--HFVDDTHIEVDTIIYAT  277 (396)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~-v--~~~dG~~~~~D~VI~aT  277 (396)
                      .+.+                               .+.+.+..|++  ...|+++++++ +  ...++..+++|.||+||
T Consensus       230 ~~~l-------------------------------~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~~~i~~D~vi~a~  278 (480)
T 3cgb_A          230 AEYI-------------------------------YKEADKHHIEILTNENVKAFKGNERVEAVETDKGTYKADLVLVSV  278 (480)
T ss_dssp             HHHH-------------------------------HHHHHHTTCEEECSCCEEEEEESSBEEEEEETTEEEECSEEEECS
T ss_pred             HHHH-------------------------------HHHHHHcCcEEEcCCEEEEEEcCCcEEEEEECCCEEEcCEEEECc
Confidence            1111                               11111113333  34566665332 2  23355679999999999


Q ss_pred             CCCCCCCCCCccccccc-CCccccccccccCCCCcEEEEecccCcC----------chhhHHHHHHHHHHHHHhcc
Q psy2343         278 GYNRHFPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAA----------GLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       278 G~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~----------~~~~~ae~qa~~~a~~l~~~  342 (396)
                      |++++.++++...+..+ ++.+.+... +.++.|+||++||+....          ..++.|..||+.+|.++.|.
T Consensus       279 G~~p~~~~l~~~g~~~~~~G~I~Vd~~-~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~  353 (480)
T 3cgb_A          279 GVKPNTDFLEGTNIRTNHKGAIEVNAY-MQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDK  353 (480)
T ss_dssp             CEEESCGGGTTSCCCBCTTSCBCCCTT-SBCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTC
T ss_pred             CCCcChHHHHhCCcccCCCCCEEECCC-ccCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCC
Confidence            99999888877666654 355666655 577899999999997421          35788999999999999875

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.86  E-value=1.1e-22  Score=197.89  Aligned_cols=226  Identities=14%  Similarity=0.085  Sum_probs=158.6

Q ss_pred             HHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Cccc-c-eeecccCCCC--
Q psy2343          57 SYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSG-E-ILHSMDYKSP--  131 (396)
Q Consensus        57 ~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g-~-~~hs~~~~~~--  131 (396)
                      ++++++++.  ++++++|+.|++.+.  +|++++|+++.||+||+|||.  .|+.|+++| .+.+ . +++.....+.  
T Consensus        68 ~~~~~~gv~--~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~--~p~~~~i~G~~~~~~~~v~~~~~~~d~~~  141 (431)
T 1q1r_A           68 DAYAAQNIQ--LLGGTQVTAINRDRQ--QVILSDGRALDYDRLVLATGG--RPRPLPVASGAVGKANNFRYLRTLEDAEC  141 (431)
T ss_dssp             HHHHHTTEE--EECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCE--EECCCGGGTTHHHHSTTEEESSSHHHHHH
T ss_pred             HHHHhCCCE--EEeCCEEEEEECCCC--EEEECCCCEEECCEEEEcCCC--CccCCCCCCcccCCCceEEEECCHHHHHH
Confidence            444567776  888999999987543  788888888999999999999  899998888 4333 1 3332222111  


Q ss_pred             ---CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHH
Q psy2343         132 ---DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFK  208 (396)
Q Consensus       132 ---~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  208 (396)
                         ....+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.. +|+.   .+         .         .+...+  
T Consensus       142 l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~-l~~~---~~---------~---------~~~~~l--  197 (431)
T 1q1r_A          142 IRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV-LERV---TA---------P---------PVSAFY--  197 (431)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST-TTTT---SC---------H---------HHHHHH--
T ss_pred             HHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc-ccch---hh---------H---------HHHHHH--
Confidence               1125899999999999999999999999999999987631 1110   00         0         111111  


Q ss_pred             HhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeC----C---eEEecCCcEecCcEEEEccCC
Q psy2343         209 LAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG----N---IVHFVDDTHIEVDTIIYATGY  279 (396)
Q Consensus       209 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~----~---~v~~~dG~~~~~D~VI~aTG~  279 (396)
                                                   .+.+.+..|+  ....|+++++    +   .|.+.||+.+++|.||+|+|+
T Consensus       198 -----------------------------~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~  248 (431)
T 1q1r_A          198 -----------------------------EHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGL  248 (431)
T ss_dssp             -----------------------------HHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCE
T ss_pred             -----------------------------HHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence                                         1111111233  3345666653    2   478899999999999999999


Q ss_pred             CCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcC----------chhhHHHHHHHHHHHHHhccc
Q psy2343         280 NRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA----------GLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       280 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~----------~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      +++.++++...+..++ ++.+... +.++.|+||++||+....          ..++.|..||+.+|.+|.|..
T Consensus       249 ~p~~~l~~~~gl~~~~-gi~Vd~~-~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~  320 (431)
T 1q1r_A          249 IPNCELASAAGLQVDN-GIVINEH-MQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKV  320 (431)
T ss_dssp             EECCHHHHHTTCCBSS-SEECCTT-SBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCC
T ss_pred             CcCcchhhccCCCCCC-CEEECCC-cccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCCC
Confidence            9998887766666654 4665554 578899999999997532          146789999999999998864

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.86  E-value=2.5e-22  Score=192.59  Aligned_cols=234  Identities=15%  Similarity=0.110  Sum_probs=165.4

Q ss_pred             ChHHHH-HHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeec
Q psy2343          47 NHSMML-DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHS  125 (396)
Q Consensus        47 ~~~~~~-~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs  125 (396)
                      ...++. .++..+++++++.  ++++++|+.++.+.  ++|++.++ ++.||+||+|||+  .|..|+++|.....++++
T Consensus        57 ~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~--~~v~~~~~-~~~~d~lviAtG~--~p~~p~i~g~~~~~v~~~  129 (384)
T 2v3a_A           57 DADGLAMAEPGAMAEQLNAR--ILTHTRVTGIDPGH--QRIWIGEE-EVRYRDLVLAWGA--EPIRVPVEGDAQDALYPI  129 (384)
T ss_dssp             CHHHHEEECHHHHHHHTTCE--EECSCCCCEEEGGG--TEEEETTE-EEECSEEEECCCE--EECCCCCBSTTTTCEEEC
T ss_pred             CHHHhhccCHHHHHHhCCcE--EEeCCEEEEEECCC--CEEEECCc-EEECCEEEEeCCC--CcCCCCCCCcCcCCEEEE
Confidence            345554 3678888888886  77889999988643  46666544 5899999999999  899999998332346666


Q ss_pred             ccCCCCC-----CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHH
Q psy2343         126 MDYKSPD-----QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETM  200 (396)
Q Consensus       126 ~~~~~~~-----~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~  200 (396)
                      .++.+..     ...+|+|+|||+|.+|+|+|..+++.+.+|+++.+.+.. +|..   .+         .         
T Consensus       130 ~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-~~~~---~~---------~---------  187 (384)
T 2v3a_A          130 NDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQV-MPGL---LH---------P---------  187 (384)
T ss_dssp             SSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS-STTT---SC---------H---------
T ss_pred             CCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcch-hhcc---cC---------H---------
Confidence            5543321     124899999999999999999999999999999987631 1110   00         0         


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeC--C--eEEecCCcEecCcEEE
Q psy2343         201 AYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG--N--IVHFVDDTHIEVDTII  274 (396)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~--~--~v~~~dG~~~~~D~VI  274 (396)
                      .+.+.                               +.+.+....|+  ....|++++.  +  .|.+.||+.+++|.||
T Consensus       188 ~~~~~-------------------------------l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv  236 (384)
T 2v3a_A          188 AAAKA-------------------------------VQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVV  236 (384)
T ss_dssp             HHHHH-------------------------------HHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEE
T ss_pred             HHHHH-------------------------------HHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEE
Confidence            11111                               11112222333  3445666653  2  4778899999999999


Q ss_pred             EccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCc----CchhhHHHHHHHHHHHHHhcc
Q psy2343         275 YATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA----AGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       275 ~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~----~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      +|||++++.++++...+..+++ +.+..+ +.++.|+||++||+...    ...+..+..||+.+|.++.|.
T Consensus       237 ~a~G~~p~~~l~~~~g~~~~~g-i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~  306 (384)
T 2v3a_A          237 SAVGLRPRTELAFAAGLAVNRG-IVVDRS-LRTSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGN  306 (384)
T ss_dssp             ECSCEEECCHHHHHTTCCBSSS-EEECTT-CBCSSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred             ECcCCCcCHHHHHHCCCCCCCC-EEECCC-CCCCCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhcCC
Confidence            9999999987776666666544 666655 56899999999999742    124667899999999999875

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.86  E-value=9.2e-22  Score=194.11  Aligned_cols=223  Identities=16%  Similarity=0.097  Sum_probs=155.5

Q ss_pred             HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC--cE------EEcCEEEEcccCCCCCCCCCCCC-Cccc-ceee
Q psy2343          55 LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KK------KKYDFIAVCNGAQRVARYPNYSG-YFSG-EILH  124 (396)
Q Consensus        55 l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g--~~------~~~d~vvvAtG~~~~p~~P~~~g-~~~g-~~~h  124 (396)
                      +...+++.++.  +++++.+..   +.+.++|++.+|  ++      +.||+||+|||+  .|.  .+|| .+.+ .++|
T Consensus       102 ~~~~~~~~gv~--~~~g~~~~~---~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs--~p~--~~~g~~~~~~~v~~  172 (478)
T 1v59_A          102 IELLFKKNKVT--YYKGNGSFE---DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGS--EVT--PFPGIEIDEEKIVS  172 (478)
T ss_dssp             HHHHHHHTTCE--EEESEEEES---SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCE--EEC--CCTTCCCCSSSEEC
T ss_pred             HHHHHHhCCCE--EEEEEEEEc---cCCeEEEEecCCCcccccccceEEeCEEEECcCC--CCC--CCCCCCCCCceEEc
Confidence            44556667776  777776542   456788887766  56      899999999998  552  3455 4444 4667


Q ss_pred             cccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHH
Q psy2343         125 SMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK  204 (396)
Q Consensus       125 s~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  204 (396)
                      +.+...... .+|+|+|||+|.+|+|+|..|++.+.+|+++.|++.. +|..    +         .         .+..
T Consensus       173 ~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~----~---------~---------~~~~  228 (478)
T 1v59_A          173 STGALSLKE-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI-GASM----D---------G---------EVAK  228 (478)
T ss_dssp             HHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-SSSS----C---------H---------HHHH
T ss_pred             HHHHHhhhc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcc-cccc----C---------H---------HHHH
Confidence            666555433 4799999999999999999999999999999998632 1210    0         0         1111


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeC----C--eEEec-----CCcEecCc
Q psy2343         205 QVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNG----N--IVHFV-----DDTHIEVD  271 (396)
Q Consensus       205 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~----~--~v~~~-----dG~~~~~D  271 (396)
                      .                               +.+.+.+..|++.  ..|++++.    +  .|.+.     +|+.+++|
T Consensus       229 ~-------------------------------l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D  277 (478)
T 1v59_A          229 A-------------------------------TQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAE  277 (478)
T ss_dssp             H-------------------------------HHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEES
T ss_pred             H-------------------------------HHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECC
Confidence            1                               1111111234432  34566643    2  35555     45679999


Q ss_pred             EEEEccCCCCCCC--CCCccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         272 TIIYATGYNRHFP--FIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       272 ~VI~aTG~~~~~~--~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      .||+|||++|+.+  +++...+..+ ++.+.+.+. +.++.|+||++||+.......+.|..||+.+|..+.+.
T Consensus       278 ~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~  350 (478)
T 1v59_A          278 VLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQ-FNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTG  350 (478)
T ss_dssp             EEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTT-SBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCcCCCCCCchhcCceeCCCCCEeECcC-CccCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence            9999999999987  6776666665 455666655 46889999999999876667789999999999999875

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.86  E-value=6.6e-21  Score=187.89  Aligned_cols=222  Identities=19%  Similarity=0.148  Sum_probs=151.4

Q ss_pred             HHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc--EEEcCEEEEcccCCCCCCCC-CCCCCcccceeecccCCCCCC
Q psy2343          57 SYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVARYP-NYSGYFSGEILHSMDYKSPDQ  133 (396)
Q Consensus        57 ~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P-~~~g~~~g~~~hs~~~~~~~~  133 (396)
                      ..++..++.  +..+ +++.+  +.+.+.|.+.+|+  ++.||+||+|||+  .|..| ++||.-  .++++.++... .
T Consensus       113 ~~~~~~gv~--~~~g-~~~~i--~~~~~~v~~~~g~~~~~~~d~lviAtGs--~p~~p~~i~g~~--~~~~~~~~~~l-~  182 (479)
T 2hqm_A          113 KNLEKEKVD--VVFG-WARFN--KDGNVEVQKRDNTTEVYSANHILVATGG--KAIFPENIPGFE--LGTDSDGFFRL-E  182 (479)
T ss_dssp             HHHHHTTEE--EEEE-EEEEC--TTSCEEEEESSSCCEEEEEEEEEECCCE--EECCCTTSTTGG--GSBCHHHHHHC-S
T ss_pred             HHHHhCCCE--EEEe-EEEEe--eCCEEEEEeCCCcEEEEEeCEEEEcCCC--CCCCCCCCCCcc--cccchHHHhcc-c
Confidence            334444543  3333 34443  2456778777776  7899999999998  89999 888821  23444333222 2


Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFD  213 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  213 (396)
                      ..+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+... |..    +         .         .+.+.        
T Consensus       183 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-~~~----d---------~---------~~~~~--------  231 (479)
T 2hqm_A          183 EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL-RKF----D---------E---------CIQNT--------  231 (479)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSC-TTS----C---------H---------HHHHH--------
T ss_pred             ccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccc-ccc----C---------H---------HHHHH--------
Confidence            247899999999999999999999999999999986321 210    1         0         11111        


Q ss_pred             CCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC------CeEEecCC-cEecCcEEEEccCCCCCCC
Q psy2343         214 GVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG------NIVHFVDD-THIEVDTIIYATGYNRHFP  284 (396)
Q Consensus       214 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~------~~v~~~dG-~~~~~D~VI~aTG~~~~~~  284 (396)
                                             +.+.+....|++  ...|+++++      ..|.++|| +.+++|.||+|||++|+..
T Consensus       232 -----------------------l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~  288 (479)
T 2hqm_A          232 -----------------------ITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLG  288 (479)
T ss_dssp             -----------------------HHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCC
T ss_pred             -----------------------HHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccc
Confidence                                   111111113333  345666653      14778899 7899999999999999986


Q ss_pred             C-CCccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343         285 F-IDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       285 ~-l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      + ++..+++.+ ++.+.+.+. +.++.|+||++||+......++.|..||+.+|.++.+..
T Consensus       289 l~l~~~gl~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~  348 (479)
T 2hqm_A          289 MGSENVGIKLNSHDQIIADEY-QNTNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGPE  348 (479)
T ss_dssp             SSGGGGTCCBCTTSCBCCCTT-CBCSSTTEEECGGGTTSSCCHHHHHHHHHHHHHHHHSCG
T ss_pred             cChhhcCceECCCCCEeECCC-CccCCCCEEEEEecCCCcccHHHHHHHHHHHHHHhcCCC
Confidence            5 565556654 355666555 478999999999997655678899999999999998753

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.86  E-value=1.5e-21  Score=192.13  Aligned_cols=226  Identities=11%  Similarity=0.049  Sum_probs=156.9

Q ss_pred             HHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCC
Q psy2343          53 DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYK  129 (396)
Q Consensus        53 ~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~  129 (396)
                      .++..++++.++.  +++++.+ .++  .+.++|.+.+|  .++.||+||+|||+  .|..|+++| ... .++++.++.
T Consensus        97 ~~~~~~~~~~~v~--~~~g~~~-~i~--~~~~~v~~~~G~~~~~~~d~lviAtG~--~p~~p~~~g~~~~-~v~t~~~~~  168 (468)
T 2qae_A           97 GGVEYLFKKNKVT--YYKGEGS-FET--AHSIRVNGLDGKQEMLETKKTIIATGS--EPTELPFLPFDEK-VVLSSTGAL  168 (468)
T ss_dssp             HHHHHHHHHHTCE--EEEEEEE-EEE--TTEEEEEETTSCEEEEEEEEEEECCCE--EECCBTTBCCCSS-SEECHHHHH
T ss_pred             HHHHHHHHhCCCE--EEEEEEE-Eee--CCEEEEEecCCceEEEEcCEEEECCCC--CcCCCCCCCCCcC-ceechHHHh
Confidence            3445666677776  6666543 343  57788888777  67899999999999  888888888 322 366666554


Q ss_pred             CCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHH
Q psy2343         130 SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKL  209 (396)
Q Consensus       130 ~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  209 (396)
                      .... .+++|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|.    .+         .         .+.+.    
T Consensus       169 ~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~----~d---------~---------~~~~~----  220 (468)
T 2qae_A          169 ALPR-VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRC-APT----LD---------E---------DVTNA----  220 (468)
T ss_dssp             TCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-STT----SC---------H---------HHHHH----
T ss_pred             hccc-CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcc-ccc----CC---------H---------HHHHH----
Confidence            4333 5799999999999999999999999999999998632 221    01         0         11111    


Q ss_pred             hcCCCCCCCCCCCCCCCCcccCccCchhhhcc-cCCCeEe--cCCcceEeCC----eEEec--CC--cEecCcEEEEccC
Q psy2343         210 AGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI-GHGDILP--KDDIKNLNGN----IVHFV--DD--THIEVDTIIYATG  278 (396)
Q Consensus       210 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i-~~g~i~~--~~~i~~i~~~----~v~~~--dG--~~~~~D~VI~aTG  278 (396)
                                                 +.+.+ ....|++  ...|++++++    .|.+.  ||  +.+++|.||+|+|
T Consensus       221 ---------------------------l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G  273 (468)
T 2qae_A          221 ---------------------------LVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVG  273 (468)
T ss_dssp             ---------------------------HHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSC
T ss_pred             ---------------------------HHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCC
Confidence                                       11112 1123443  3456666532    24555  77  5689999999999


Q ss_pred             CCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEecccC-cCchhhHHHHHHHHHHHHHhcc
Q psy2343         279 YNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       279 ~~~~~~~l--~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~-~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      ++|+.++|  +...+..+ .+.+.+... +.++.|+||++||+.. .....+.|..||+.+|..+.+.
T Consensus       274 ~~p~~~~l~l~~~gl~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~  340 (468)
T 2qae_A          274 RRPFTGGLGLDKINVAKNERGFVKIGDH-FETSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGK  340 (468)
T ss_dssp             EEECCTTSCHHHHTCCBCTTSCBCCCTT-SBCSSTTEEECGGGBSSSCSCHHHHHHHHHHHHHHHTTC
T ss_pred             cccCCCCCCchhcCCccCCCCCEeECCC-cccCCCCEEEeeccCCCCCccHhHHHHHHHHHHHHHcCC
Confidence            99998884  44445554 355666655 5689999999999987 5667889999999999999875

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.86  E-value=2.8e-21  Score=191.55  Aligned_cols=191  Identities=15%  Similarity=0.167  Sum_probs=136.7

Q ss_pred             CcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343          91 GKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus        91 g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      +.++.||+||+|||+  .|..|++||.  ..++|+.++.....  +|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.
T Consensus       137 ~~~~~~d~lViAtGs--~p~~p~i~G~--~~~~~~~~~~~~~~--~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  210 (500)
T 1onf_A          137 EEILEGRNILIAVGN--KPVFPPVKGI--ENTISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR  210 (500)
T ss_dssp             ----CBSSEEECCCC--CBCCCSCTTG--GGCEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             ceEEEeCEEEECCCC--CCCCCCCCCC--CcccCHHHHhccCC--CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            556899999999998  8999999983  13567766665544  89999999999999999999999999999999764


Q ss_pred             eeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--
Q psy2343         171 HYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--  248 (396)
Q Consensus       171 ~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--  248 (396)
                      . +|..    .         .         .+...                               +.+.+.+..|++  
T Consensus       211 ~-l~~~----d---------~---------~~~~~-------------------------------l~~~l~~~gv~i~~  236 (500)
T 1onf_A          211 I-LRKF----D---------E---------SVINV-------------------------------LENDMKKNNINIVT  236 (500)
T ss_dssp             S-CTTS----C---------H---------HHHHH-------------------------------HHHHHHHTTCEEEC
T ss_pred             c-Cccc----c---------h---------hhHHH-------------------------------HHHHHHhCCCEEEE
Confidence            2 1211    0         0         11111                               111122223443  


Q ss_pred             cCCcceEeCC-----eEEecCCcE-ecCcEEEEccCCCCCCCC--CCcccccccCCccccccccccCCCCcEEEEeccc-
Q psy2343         249 KDDIKNLNGN-----IVHFVDDTH-IEVDTIIYATGYNRHFPF--IDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVN-  319 (396)
Q Consensus       249 ~~~i~~i~~~-----~v~~~dG~~-~~~D~VI~aTG~~~~~~~--l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~-  319 (396)
                      ...|+++++.     .|.++||+. +++|.||+|+|++|+.++  ++...++.+.+.+.+... +.++.|+||++||+. 
T Consensus       237 ~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~~-~~t~~~~iya~GD~~~  315 (500)
T 1onf_A          237 FADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDEN-QRTSVNNIYAVGDCCM  315 (500)
T ss_dssp             SCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECTT-CBCSSSSEEECSTTEE
T ss_pred             CCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECCC-cccCCCCEEEEecccc
Confidence            3457777532     477889988 999999999999999864  455556555555666655 468999999999997 


Q ss_pred             ---------------------------------CcCchhhHHHHHHHHHHHHHhcc
Q psy2343         320 ---------------------------------AAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       320 ---------------------------------~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                                                       .....++.|..||+.+|.++.+.
T Consensus       316 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~  371 (500)
T 1onf_A          316 VKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLK  371 (500)
T ss_dssp             EC------------------------------CBCCCCHHHHHHHHHHHHHHHHSC
T ss_pred             ccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCC
Confidence                                             22356788999999999999874

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.86  E-value=2.8e-21  Score=190.79  Aligned_cols=223  Identities=14%  Similarity=0.088  Sum_probs=157.0

Q ss_pred             HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC------------cEEEcCEEEEcccCCCCCCCCC-CCCCcccc
Q psy2343          55 LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG------------KKKKYDFIAVCNGAQRVARYPN-YSGYFSGE  121 (396)
Q Consensus        55 l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g------------~~~~~d~vvvAtG~~~~p~~P~-~~g~~~g~  121 (396)
                      +...+++.++.  +++++.+.   .+.+.+.|++.+|            .++.||+||+|||+  .|..|+ ++.  ...
T Consensus       101 ~~~~~~~~gv~--~~~g~~~~---~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs--~p~~~~~i~~--~~~  171 (482)
T 1ojt_A          101 LAGMAKSRKVD--VIQGDGQF---LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGS--RVTKLPFIPE--DPR  171 (482)
T ss_dssp             HHHHHHHTTCE--EEEEEEEE---EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCE--EECCCSSCCC--CTT
T ss_pred             HHHHHHhCCcE--EEeeEEEE---ccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCC--CCCCCCCCCc--cCc
Confidence            45566677775  66666543   2356777776555            56899999999999  677776 553  224


Q ss_pred             eeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHH
Q psy2343         122 ILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMA  201 (396)
Q Consensus       122 ~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~  201 (396)
                      ++++.+...... .+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|..    +         .         .
T Consensus       172 v~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~-l~~~----~---------~---------~  227 (482)
T 1ojt_A          172 IIDSSGALALKE-VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL-MQGA----D---------R---------D  227 (482)
T ss_dssp             EECHHHHTTCCC-CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS-STTS----C---------H---------H
T ss_pred             EEcHHHHhcccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc-cccc----C---------H---------H
Confidence            667666554433 4799999999999999999999999999999998632 1110    0         0         1


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCC----eEEecC----CcEecCc
Q psy2343         202 YIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGN----IVHFVD----DTHIEVD  271 (396)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~----~v~~~d----G~~~~~D  271 (396)
                      +.+                               .+.+.+.+..|++.  ..|++++++    .|.+.|    |+++++|
T Consensus       228 ~~~-------------------------------~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D  276 (482)
T 1ojt_A          228 LVK-------------------------------VWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYD  276 (482)
T ss_dssp             HHH-------------------------------HHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEES
T ss_pred             HHH-------------------------------HHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcC
Confidence            111                               11222222345543  356666532    467777    7788999


Q ss_pred             EEEEccCCCCCCCCC--CcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         272 TIIYATGYNRHFPFI--DKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       272 ~VI~aTG~~~~~~~l--~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      .||+|||++|+.++|  +...++.++ +.+.+.+. +.++.|+||++||+.......+.|..||+.+|.++.|.
T Consensus       277 ~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~  349 (482)
T 1ojt_A          277 AVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQ-MRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGH  349 (482)
T ss_dssp             CEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTT-SBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred             EEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCC-cccCCCCEEEEEcccCCCccHHHHHHHHHHHHHHHcCC
Confidence            999999999998874  555565544 55666654 57899999999999876667889999999999999875

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.85  E-value=4.3e-21  Score=189.86  Aligned_cols=270  Identities=14%  Similarity=0.104  Sum_probs=173.5

Q ss_pred             CCCccccccCCCCCCCCCCceeeecCCC----ccccCCCCCCCCCCC-CCChHHHHHHHHHHHH-----------Hc-CC
Q psy2343           2 ESDLGGVWNSQASCGRVYPSLHLISPKF----NTQVPDYPMPDNYPV-YPNHSMMLDYLRSYAK-----------KF-DV   64 (396)
Q Consensus         2 ~~~iGG~W~~~~~~~~~y~~~~~~~~~~----~~~~~~~p~p~~~~~-~p~~~~~~~Yl~~~~~-----------~~-~l   64 (396)
                      ++.+||+|.+.    .|+|+..+..+..    +..++.|.++...+. .....++.++.+.+++           +. ++
T Consensus        48 ~~~~GG~~~~~----gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv  123 (495)
T 2wpf_A           48 YAALGGTCVNV----GCVPKKLMVTGAQYMDHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGL  123 (495)
T ss_dssp             BCBTTHHHHHH----SHHHHHHHHHHHHHHHHHHHHHTTTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred             CCCCCCeeecC----CcchHHHHHHHHHHHHHHhHHHhcCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            56789999764    2444432221111    112233333221110 2345566666555543           33 54


Q ss_pred             CCceEeCcEEEEEEEeCCeEEEEEc---c-----CcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCC
Q psy2343          65 YNHSIFNTEVINLEQYEDIWEVELS---N-----GKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRN  136 (396)
Q Consensus        65 ~~~i~~~t~V~~v~~~~~~~~V~~~---~-----g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~  136 (396)
                      .  ++.+ +++.++  .  ++|+++   +     ++++.||+||||||+  .|..|+++|.  ..++++.++..... .+
T Consensus       124 ~--~~~g-~~~~i~--~--~~v~v~~~~~~~~~~~~~~~~d~lViATGs--~p~~p~i~G~--~~~~~~~~~~~~~~-~~  191 (495)
T 2wpf_A          124 D--FFLG-WGSLES--K--NVVVVRETADPKSAVKERLQADHILLATGS--WPQMPAIPGI--EHCISSNEAFYLPE-PP  191 (495)
T ss_dssp             E--EEES-EEEEEE--T--TEEEEESSSSTTSCEEEEEEEEEEEECCCE--EECCCCCTTG--GGCEEHHHHTTCSS-CC
T ss_pred             E--EEEe-EEEEee--C--CEEEEeecCCccCCCCeEEEcCEEEEeCCC--CcCCCCCCCc--cccccHHHHHhhhh-cC
Confidence            3  4444 355543  2  356654   3     567899999999998  8999999983  12566665554433 47


Q ss_pred             CeEEEEcCCCcHHHHHHHHhcC---CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHH---SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFD  213 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~---~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  213 (396)
                      ++|+|||+|.+|+|+|..+++.   +.+|+++.|.+.. +|..    ..                  .+...        
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~-l~~~----d~------------------~~~~~--------  240 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLI-LRGF----DE------------------TIREE--------  240 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS-CTTS----CH------------------HHHHH--------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcc-cccc----CH------------------HHHHH--------
Confidence            8999999999999999999998   9999999997632 1210    00                  11111        


Q ss_pred             CCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeCC-----eEEecCCcEecCcEEEEccCCCCCCCCC
Q psy2343         214 GVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGN-----IVHFVDDTHIEVDTIIYATGYNRHFPFI  286 (396)
Q Consensus       214 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~~-----~v~~~dG~~~~~D~VI~aTG~~~~~~~l  286 (396)
                                             +.+.+.+..|+  ....|++++..     .|.+.||+.+++|.||+|||++|+.++|
T Consensus       241 -----------------------l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L  297 (495)
T 2wpf_A          241 -----------------------VTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDL  297 (495)
T ss_dssp             -----------------------HHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGG
T ss_pred             -----------------------HHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCccccccc
Confidence                                   11111112333  34567777532     4778899999999999999999998754


Q ss_pred             --Cccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         287 --DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       287 --~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                        +...+..+ ++.+.+.+. +.++.|+||++||+......++.|..||+.+|..+.|.
T Consensus       298 ~l~~~gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~  355 (495)
T 2wpf_A          298 QLGNVGVKLTPKGGVQVDEF-SRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGN  355 (495)
T ss_dssp             TGGGTTCCBCTTSSBCCCTT-CBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred             chhhcCccCCCCCCEEECCC-CccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence              44455554 455666654 46889999999999865567889999999999999874

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.85  E-value=4.1e-22  Score=194.61  Aligned_cols=242  Identities=19%  Similarity=0.165  Sum_probs=147.0

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeecc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSM  126 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~  126 (396)
                      .+++.++..++++++++.  +++++.|.        ..|+++++. ..||+||+|||.. .|+.|.+|| ...| ++++.
T Consensus       171 ~~~~~~~~~~~l~~~gv~--~~~~~~v~--------~~v~~~~~~-~~~d~vvlAtG~~-~~~~~~ipG~~~~g-v~~a~  237 (456)
T 2vdc_G          171 EKSVVERRVKLLADAGVI--YHPNFEVG--------RDASLPELR-RKHVAVLVATGVY-KARDIKAPGSGLGN-IVAAL  237 (456)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EETTCCBT--------TTBCHHHHH-SSCSEEEECCCCC-EECCTTCSCCTTTT-EEEHH
T ss_pred             CHHHHHHHHHHHHHCCcE--EEeCCEec--------cEEEhhHhH-hhCCEEEEecCCC-CCCCCCCCCCcCCC-cEEHH
Confidence            357888888889999986  88887652        123333333 5699999999983 477788888 5444 33322


Q ss_pred             cC---------CC--------CCCCCCCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccCceeecCCCCCCChhHHHHh
Q psy2343         127 DY---------KS--------PDQIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGYHYYPKFIDGKPTPQWMLQ  188 (396)
Q Consensus       127 ~~---------~~--------~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~~~~~p~~~~~~~~~~~~~~  188 (396)
                      +|         ..        .....+|+|+|||+|++|+|+|..+.+.+. +|+++.|++...+|..    +       
T Consensus       238 ~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~----~-------  306 (456)
T 2vdc_G          238 DYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGS----Q-------  306 (456)
T ss_dssp             HHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSC----H-------
T ss_pred             HHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCC----H-------
Confidence            11         11        123679999999999999999999988754 6999999875433321    0       


Q ss_pred             hCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE---ecC-CcceEe--CC-eEE
Q psy2343         189 LGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL---PKD-DIKNLN--GN-IVH  261 (396)
Q Consensus       189 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~---~~~-~i~~i~--~~-~v~  261 (396)
                                  .-...+. .       .|+.          ...+....+...+|++.   +.. .....+  +. ...
T Consensus       307 ------------~e~~~~~-~-------~Gv~----------~~~~~~~~~i~~~g~v~~v~~~~~~~~~~d~~G~~~~~  356 (456)
T 2vdc_G          307 ------------REVAHAE-E-------EGVE----------FIWQAAPEGFTGDTVVTGVRAVRIHLGVADATGRQTPQ  356 (456)
T ss_dssp             ------------HHHHHHH-H-------TTCE----------EECCSSSCCEEEEEEEETTEEEEEEEEEEEECTTCCEE
T ss_pred             ------------HHHHHHH-H-------CCCE----------EEeCCCceEEeCCCcEEEEEEEEEEecccCCcCCcccc
Confidence                        0001100 0       0000          00000000011111111   000 000000  00 011


Q ss_pred             ecCC--cEecCcEEEEccCCCCCCC--CCCccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHH
Q psy2343         262 FVDD--THIEVDTIIYATGYNRHFP--FIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIR  336 (396)
Q Consensus       262 ~~dG--~~~~~D~VI~aTG~~~~~~--~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a  336 (396)
                      ..+|  ..+++|.||+|+|++++..  +++...+..+ .+.+.+....+.++.|+||++||+.....++..|..||+.+|
T Consensus       357 ~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~~~v~~A~~~G~~aA  436 (456)
T 2vdc_G          357 VIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWAIRDGRDAA  436 (456)
T ss_dssp             EEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSCCSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCchHHHHHHHHHHHHH
Confidence            1234  3589999999999998754  6665555553 356666666567999999999999876677888999999999


Q ss_pred             HHHhccc
Q psy2343         337 SYIQAFI  343 (396)
Q Consensus       337 ~~l~~~~  343 (396)
                      ..|.+.+
T Consensus       437 ~~i~~~L  443 (456)
T 2vdc_G          437 EGIHAYA  443 (456)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8776554

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.85  E-value=3.1e-20  Score=182.00  Aligned_cols=224  Identities=16%  Similarity=0.100  Sum_probs=154.3

Q ss_pred             HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCC
Q psy2343          55 LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQI  134 (396)
Q Consensus        55 l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~  134 (396)
                      +..++++.++.  ++.++.+ .+  +.+.+.|.+ +|.++.||+||+|||+  .|..|+++|.....++++.++..... 
T Consensus        95 ~~~~~~~~~v~--~~~g~~~-~i--~~~~~~v~~-~g~~~~~d~lviAtG~--~p~~~~~~g~~~~~v~~~~~~~~~~~-  165 (455)
T 2yqu_A           95 VEFLFKKNGIA--RHQGTAR-FL--SERKVLVEE-TGEELEARYILIATGS--APLIPPWAQVDYERVVTSTEALSFPE-  165 (455)
T ss_dssp             HHHHHHHHTCE--EEESCEE-ES--SSSEEEETT-TCCEEEEEEEEECCCE--EECCCTTBCCCSSSEECHHHHTCCSS-
T ss_pred             HHHHHHhCCCE--EEEeEEE-Ee--cCCeEEEee-CCEEEEecEEEECCCC--CCCCCCCCCCCcCcEechHHhhcccc-
Confidence            34556666765  6666543 22  245566655 6677999999999999  88888888722224677766654433 


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG  214 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  214 (396)
                      .+|+|+|||+|.+|+|+|..+++.+.+|+++.+.+.. +|..    +.                  .+.+.+        
T Consensus       166 ~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~-l~~~----~~------------------~~~~~l--------  214 (455)
T 2yqu_A          166 VPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRI-LPTM----DL------------------EVSRAA--------  214 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-CTTS----CH------------------HHHHHH--------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcc-cccc----CH------------------HHHHHH--------
Confidence            4689999999999999999999999999999987642 2210    00                  111111        


Q ss_pred             CCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--Ce--EEecCCcEecCcEEEEccCCCCCCCCC--
Q psy2343         215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NI--VHFVDDTHIEVDTIIYATGYNRHFPFI--  286 (396)
Q Consensus       215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~--v~~~dG~~~~~D~VI~aTG~~~~~~~l--  286 (396)
                                             .+.+.+..|++  ...|++++.  +.  +.++||+.+++|.||+|||++++.+++  
T Consensus       215 -----------------------~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~  271 (455)
T 2yqu_A          215 -----------------------ERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSL  271 (455)
T ss_dssp             -----------------------HHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTTCCG
T ss_pred             -----------------------HHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCCCCh
Confidence                                   11111112333  345666653  33  455688889999999999999998874  


Q ss_pred             Cccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         287 DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       287 ~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      +...+..+ .+.+.+... +.++.|+||++||+.......+.|..||+.+|.++.|.
T Consensus       272 ~~~g~~~~~~g~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~  327 (455)
T 2yqu_A          272 ENAGLSTDERGRIPVDEH-LRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRG  327 (455)
T ss_dssp             GGGTCCCCTTSCCCCCTT-SBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred             hhcCCccCCCCcEeECCC-cccCCCCEEEEecCCCCccCHHHHHHhHHHHHHHHcCC
Confidence            44445543 345666655 46889999999999876667788999999999999875

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.84  E-value=1e-21  Score=193.97  Aligned_cols=233  Identities=17%  Similarity=0.128  Sum_probs=156.5

Q ss_pred             CCChHHHHHHHHHHHHHc-----------CCCCceEeCcEEEEEEEeCCeEEEEEccCc-EEEcCEEEEcccCCCCCCCC
Q psy2343          45 YPNHSMMLDYLRSYAKKF-----------DVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~-----------~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~-~~~~d~vvvAtG~~~~p~~P  112 (396)
                      .+...++.+|.+.+++++           ++.   .+..++..+  +.+.+.|.+.+|. ++.||+||||||+  .|..|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~a~~~--~~~~v~v~~~~g~~~~~~d~lviATGs--~p~~p  165 (483)
T 3dgh_A           93 KPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVE---YINGLGSFV--DSHTLLAKLKSGERTITAQTFVIAVGG--RPRYP  165 (483)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE---EECSEEEEE--ETTEEEEECTTCCEEEEEEEEEECCCE--EECCC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEeEEEEc--cCCEEEEEeCCCeEEEEcCEEEEeCCC--CcCCC
Confidence            445667777776665543           222   122233322  2566778777764 6899999999998  89999


Q ss_pred             CCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCc
Q psy2343         113 NYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGN  191 (396)
Q Consensus       113 ~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~  191 (396)
                      ++|| ..  ..+++.++.... ..+++|+|||+|.+|+|+|..+++.+.+|+++.|..  .+|..    +.         
T Consensus       166 ~i~G~~~--~~~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~--~l~~~----d~---------  227 (483)
T 3dgh_A          166 DIPGAVE--YGITSDDLFSLD-REPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI--VLRGF----DQ---------  227 (483)
T ss_dssp             SSTTHHH--HCBCHHHHTTCS-SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC--SSTTS----CH---------
T ss_pred             CCCCccc--ccCcHHHHhhhh-hcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC--CCccc----CH---------
Confidence            9998 21  134554444332 346899999999999999999999999999998853  12211    10         


Q ss_pred             cccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeC--C---eEEecC
Q psy2343         192 KFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG--N---IVHFVD  264 (396)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~--~---~v~~~d  264 (396)
                               .+.+.                               +.+.+.+..|+  ....+.+++.  +   .|.+.+
T Consensus       228 ---------~~~~~-------------------------------l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~  267 (483)
T 3dgh_A          228 ---------QMAEL-------------------------------VAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKN  267 (483)
T ss_dssp             ---------HHHHH-------------------------------HHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEE
T ss_pred             ---------HHHHH-------------------------------HHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEec
Confidence                     11111                               11111111233  3334666642  2   267776


Q ss_pred             Cc-----EecCcEEEEccCCCCCCCCC--CcccccccCCccccccccccCCCCcEEEEecccC-cCchhhHHHHHHHHHH
Q psy2343         265 DT-----HIEVDTIIYATGYNRHFPFI--DKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIR  336 (396)
Q Consensus       265 G~-----~~~~D~VI~aTG~~~~~~~l--~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~-~~~~~~~ae~qa~~~a  336 (396)
                      |.     .+++|.||+|||++|+..++  +...+..+++.+.+... +.++.|+||++||+.. .....+.|..||+.+|
T Consensus       268 ~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa  346 (483)
T 3dgh_A          268 VETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQ-EATNVANIYAVGDIIYGKPELTPVAVLAGRLLA  346 (483)
T ss_dssp             TTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBBCCCTT-CBCSSTTEEECSTTBTTSCCCHHHHHHHHHHHH
T ss_pred             CCCCceeEEEcCEEEECcccccCcCcCCchhcCccccCCEEEECcC-CccCCCCEEEEEcccCCCCccHHHHHHHHHHHH
Confidence            64     68999999999999998876  44456655566766655 4789999999999963 3456788999999999


Q ss_pred             HHHhccc
Q psy2343         337 SYIQAFI  343 (396)
Q Consensus       337 ~~l~~~~  343 (396)
                      ..+.|..
T Consensus       347 ~~i~g~~  353 (483)
T 3dgh_A          347 RRLYGGS  353 (483)
T ss_dssp             HHHHSCC
T ss_pred             HHHcCCC
Confidence            9998763

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.84  E-value=4.6e-21  Score=188.17  Aligned_cols=216  Identities=15%  Similarity=0.154  Sum_probs=148.5

Q ss_pred             HHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCe
Q psy2343          59 AKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKR  138 (396)
Q Consensus        59 ~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~  138 (396)
                      +++.++.  ++.+ ++..++  .  +.|++ +++++.||+||+|||+  .|..|++||.  ..++++.++..... .+++
T Consensus       102 ~~~~gv~--~~~g-~~~~i~--~--~~v~~-~g~~~~~d~lviAtGs--~p~~p~i~G~--~~~~~~~~~~~~~~-~~~~  168 (463)
T 2r9z_A          102 VERLGIT--RVDG-HARFVD--A--HTIEV-EGQRLSADHIVIATGG--RPIVPRLPGA--ELGITSDGFFALQQ-QPKR  168 (463)
T ss_dssp             HHHTTCE--EEES-CEEEEE--T--TEEEE-TTEEEEEEEEEECCCE--EECCCSCTTG--GGSBCHHHHHHCSS-CCSE
T ss_pred             HHHCCCE--EEEe-EEEEcc--C--CEEEE-CCEEEEcCEEEECCCC--CCCCCCCCCc--cceecHHHHhhhhc-cCCE
Confidence            3445654  4444 344443  2  35666 6677899999999998  8999999883  12445444433222 3689


Q ss_pred             EEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCC
Q psy2343         139 VLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYG  218 (396)
Q Consensus       139 VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (396)
                      |+|||+|.+|+|+|..|++.+.+|+++.|++... |.    .+.                  .+...             
T Consensus       169 vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l-~~----~~~------------------~~~~~-------------  212 (463)
T 2r9z_A          169 VAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLL-FQ----FDP------------------LLSAT-------------  212 (463)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TT----SCH------------------HHHHH-------------
T ss_pred             EEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccc-cc----cCH------------------HHHHH-------------
Confidence            9999999999999999999999999999876321 11    000                  11111             


Q ss_pred             CCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC----CeEEecCCc-EecCcEEEEccCCCCCCCCC--Ccc
Q psy2343         219 LKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG----NIVHFVDDT-HIEVDTIIYATGYNRHFPFI--DKE  289 (396)
Q Consensus       219 ~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~----~~v~~~dG~-~~~~D~VI~aTG~~~~~~~l--~~~  289 (396)
                                        +.+.+.+..|++  ...|++++.    ..|.+.||+ ++++|.||+|||++|+.++|  +..
T Consensus       213 ------------------l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~  274 (463)
T 2r9z_A          213 ------------------LAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAA  274 (463)
T ss_dssp             ------------------HHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCTTSCHHHH
T ss_pred             ------------------HHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhc
Confidence                              111122223443  345677753    257788999 89999999999999998765  333


Q ss_pred             ccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         290 KLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       290 ~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      .+..+ ++.+.+... +.++.|+||++||+.......+.|..||+.+|.++.|.
T Consensus       275 g~~~~~~G~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~  327 (463)
T 2r9z_A          275 GIEVQSNGMVPTDAY-QNTNVPGVYALGDITGRDQLTPVAIAAGRRLAERLFDG  327 (463)
T ss_dssp             TCCCCTTSCCCCCTT-SBCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCccCCCCCEeECCC-CccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence            45544 455666655 47899999999999765567889999999999999875

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.84  E-value=1.3e-21  Score=193.38  Aligned_cols=237  Identities=15%  Similarity=0.128  Sum_probs=157.3

Q ss_pred             CChHHHHHHHHHHHHHcCCC--CceEe--CcEEEE--EEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcc
Q psy2343          46 PNHSMMLDYLRSYAKKFDVY--NHSIF--NTEVIN--LEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFS  119 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~--~~i~~--~t~V~~--v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~  119 (396)
                      ....++.+|++++++++...  ..+..  +..+..  ... .+.++|+++++.++.||+||||||+  .|..|++++...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~-~~~~~v~~~~~~~~~~d~lViATGs--~p~~p~~~~~~~  158 (492)
T 3ic9_A           82 VNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKF-LDEHTLQVDDHSQVIAKRIVIATGS--RPNYPEFLAAAG  158 (492)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEE-EETTEEEETTTEEEEEEEEEECCCE--ECCCCHHHHTTG
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEE-ecCCEEEEcCCcEEEeCEEEEccCC--CCcCCCCCCccC
Confidence            45677888877776654311  00000  000100  000 2235777877888999999999998  898887666333


Q ss_pred             cceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHH
Q psy2343         120 GEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEET  199 (396)
Q Consensus       120 g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~  199 (396)
                      ..++++.++... ...+|+|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|..    .         .        
T Consensus       159 ~~v~t~~~~~~~-~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~-l~~~----d---------~--------  215 (492)
T 3ic9_A          159 SRLLTNDNLFEL-NDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV-ANLQ----D---------E--------  215 (492)
T ss_dssp             GGEECHHHHTTC-SSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCC-TTCC----C---------H--------
T ss_pred             CcEEcHHHHhhh-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc-cccC----C---------H--------
Confidence            456666555443 334899999999999999999999999999999998642 1110    0         0        


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--Ce--EEec--CC--cEec
Q psy2343         200 MAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NI--VHFV--DD--THIE  269 (396)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~--v~~~--dG--~~~~  269 (396)
                       .+.+                               .+.+.+... |++  ...|++++.  +.  +.+.  ||  ..++
T Consensus       216 -~~~~-------------------------------~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~  262 (492)
T 3ic9_A          216 -EMKR-------------------------------YAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTES  262 (492)
T ss_dssp             -HHHH-------------------------------HHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEE
T ss_pred             -HHHH-------------------------------HHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEE
Confidence             1111                               111222222 443  334666643  22  4554  77  5689


Q ss_pred             CcEEEEccCCCCCCCC--CCcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhc
Q psy2343         270 VDTIIYATGYNRHFPF--IDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQA  341 (396)
Q Consensus       270 ~D~VI~aTG~~~~~~~--l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~  341 (396)
                      +|.||+|||++|+.++  ++...+..++ +.+.+....+.++.|+||++||+.......+.|..||+.+|..+.+
T Consensus       263 ~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~  337 (492)
T 3ic9_A          263 FQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGA  337 (492)
T ss_dssp             ESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGGGTSSCSHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCEEEEEecCCCCccHHHHHHHHHHHHHHHcC
Confidence            9999999999999988  4444555543 4455542556789999999999987667788999999999999987

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.84  E-value=2.8e-20  Score=182.02  Aligned_cols=216  Identities=18%  Similarity=0.113  Sum_probs=147.6

Q ss_pred             HHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCe
Q psy2343          59 AKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKR  138 (396)
Q Consensus        59 ~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~  138 (396)
                      .++.++.  +..+ +++.++  ..  +|.+ +++++.||+||+|||+  .|..|++||..  .++++.++.... -.+|+
T Consensus       103 ~~~~~v~--~~~g-~~~~i~--~~--~v~~-~g~~~~~d~lviAtGs--~p~~p~i~g~~--~~~~~~~~~~~~-~~~~~  169 (450)
T 1ges_A          103 LGKNNVD--VIKG-FARFVD--AK--TLEV-NGETITADHILIATGG--RPSHPDIPGVE--YGIDSDGFFALP-ALPER  169 (450)
T ss_dssp             HHHTTCE--EEES-CCEEEE--TT--EEEE-TTEEEEEEEEEECCCE--EECCCCSTTGG--GSBCHHHHHHCS-SCCSE
T ss_pred             HHhCCCE--EEEe-EEEEec--CC--EEEE-CCEEEEeCEEEECCCC--CCCCCCCCCcc--ceecHHHhhhhh-hcCCe
Confidence            3455654  4444 334443  22  5555 6677999999999998  89999998831  234444433322 23789


Q ss_pred             EEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCC
Q psy2343         139 VLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYG  218 (396)
Q Consensus       139 VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (396)
                      |+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|.    .+         .         .+.+.+            
T Consensus       170 vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~----~~---------~---------~~~~~l------------  214 (450)
T 1ges_A          170 VAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP-LPS----FD---------P---------MISETL------------  214 (450)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-STT----SC---------H---------HHHHHH------------
T ss_pred             EEEECCCHHHHHHHHHHHhcCCEEEEEEeCCch-hhh----hh---------H---------HHHHHH------------
Confidence            999999999999999999999999999987632 111    00         0         111111            


Q ss_pred             CCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC-----eEEecCCcEecCcEEEEccCCCCCCCCC--Ccc
Q psy2343         219 LKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVHFVDDTHIEVDTIIYATGYNRHFPFI--DKE  289 (396)
Q Consensus       219 ~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~-----~v~~~dG~~~~~D~VI~aTG~~~~~~~l--~~~  289 (396)
                                         .+.+.+..|++  ...|++++.+     .|.+.||+.+++|.||+|+|++|+.++|  +..
T Consensus       215 -------------------~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~  275 (450)
T 1ges_A          215 -------------------VEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAA  275 (450)
T ss_dssp             -------------------HHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHH
T ss_pred             -------------------HHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhc
Confidence                               11111112333  3456666531     5778899999999999999999998855  333


Q ss_pred             ccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         290 KLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       290 ~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      .+..+ ++.+.+...+ .++.|+||++||+......++.|..||+.+|.++.+.
T Consensus       276 gl~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~  328 (450)
T 1ges_A          276 GVKTNEKGYIVVDKYQ-NTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNN  328 (450)
T ss_dssp             TCCBCTTSCBCCCTTS-BCSSTTEEECSGGGTSCCCHHHHHHHHHHHHHHHHTT
T ss_pred             CceECCCCCEeECCCC-ccCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence            45554 4556666554 6899999999999765567889999999999999874

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.84  E-value=1.7e-20  Score=185.44  Aligned_cols=221  Identities=17%  Similarity=0.088  Sum_probs=151.8

Q ss_pred             HHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEE---ccC---cEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCC
Q psy2343          57 SYAKKF-DVYNHSIFNTEVINLEQYEDIWEVEL---SNG---KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYK  129 (396)
Q Consensus        57 ~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~---~~g---~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~  129 (396)
                      ...++. ++.  ++.+ +++.++  .+.+.+..   .+|   .++.||+||||||+  .|..|++||.  ..++++.++.
T Consensus       111 ~~l~~~~gv~--~~~g-~~~~i~--~~~v~v~~~~~~~g~~~~~~~~d~lviAtGs--~p~~p~i~g~--~~~~~~~~~~  181 (490)
T 1fec_A          111 GMFADTEGLT--FHQG-FGALQD--NHTVLVRESADPNSAVLETLDTEYILLATGS--WPQHLGIEGD--DLCITSNEAF  181 (490)
T ss_dssp             HHHHTSTTEE--EEES-EEEEEE--TTEEEEESSSSTTSCEEEEEEEEEEEECCCE--EECCCCSBTG--GGCBCHHHHT
T ss_pred             HHHhcCCCcE--EEEe-EEEEee--CCEEEEEeeccCCCCceEEEEcCEEEEeCCC--CCCCCCCCCc--cceecHHHHh
Confidence            333444 554  4445 355554  34455543   256   56899999999998  8999988883  1244554444


Q ss_pred             CCCCCCCCeEEEEcCCCcHHHHHHHHhcC---CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHH
Q psy2343         130 SPDQIRNKRVLVVGAGNSGCDIAVDASHH---SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQV  206 (396)
Q Consensus       130 ~~~~~~~k~VvVVG~G~sa~d~a~~l~~~---~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  206 (396)
                      ... ..+++|+|||+|.+|+|+|..+.+.   +.+|+++.|.+.. +|.    .+         .         .+.+. 
T Consensus       182 ~~~-~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~-l~~----~d---------~---------~~~~~-  236 (490)
T 1fec_A          182 YLD-EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI-LRG----FD---------S---------ELRKQ-  236 (490)
T ss_dssp             TCS-SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS-STT----SC---------H---------HHHHH-
T ss_pred             hhh-hcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCc-ccc----cC---------H---------HHHHH-
Confidence            332 2478999999999999999999998   9999999998632 121    00         0         11111 


Q ss_pred             HHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC-----eEEecCCcEecCcEEEEccCC
Q psy2343         207 FKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVHFVDDTHIEVDTIIYATGY  279 (396)
Q Consensus       207 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~-----~v~~~dG~~~~~D~VI~aTG~  279 (396)
                                                    +.+.+....|++  ...|++++..     .|.+.||+.+++|.||+|+|+
T Consensus       237 ------------------------------l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~  286 (490)
T 1fec_A          237 ------------------------------LTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR  286 (490)
T ss_dssp             ------------------------------HHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             ------------------------------HHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCC
Confidence                                          111122223443  4567777532     477889988999999999999


Q ss_pred             CCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         280 NRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       280 ~~~~~~l--~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      +|+..+|  +..++..+ .+.+.+.+. +.++.|+||++||+......++.|..||+.+|..+.|.
T Consensus       287 ~p~~~~L~l~~~gl~~~~~G~I~Vd~~-~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~  351 (490)
T 1fec_A          287 VPRSQTLQLEKAGVEVAKNGAIKVDAY-SKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFAN  351 (490)
T ss_dssp             EESCTTSCGGGGTCCBCTTSCBCCCTT-CBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred             CcCccccCchhcCccCCCCCCEEECCC-CccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence            9998754  44455554 455666655 56899999999999865567889999999999999874

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.84  E-value=6.7e-21  Score=187.09  Aligned_cols=220  Identities=13%  Similarity=0.109  Sum_probs=152.1

Q ss_pred             HHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCC-CCCCcccceeecccCCCCCCC
Q psy2343          56 RSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN-YSGYFSGEILHSMDYKSPDQI  134 (396)
Q Consensus        56 ~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~-~~g~~~g~~~hs~~~~~~~~~  134 (396)
                      ...+++.++.  ++.++.+. ++  .+  +|++. |+++.||+||+|||+  .|..|+ +++  .+.++++.++......
T Consensus       100 ~~~~~~~gv~--~~~g~~~~-~~--~~--~v~v~-g~~~~~d~lViATGs--~p~~p~gi~~--~~~v~~~~~~~~l~~~  167 (464)
T 2eq6_A          100 GTLLKGNGVE--LLRGFARL-VG--PK--EVEVG-GERYGAKSLILATGS--EPLELKGFPF--GEDVWDSTRALKVEEG  167 (464)
T ss_dssp             HHHHHHTTCE--EEESCEEE-EE--TT--EEEET-TEEEEEEEEEECCCE--EECCBTTBCC--SSSEECHHHHTCGGGC
T ss_pred             HHHHHhCCCE--EEeeeEEE-cc--CC--EEEEc-cEEEEeCEEEEcCCC--CCCCCCCCCC--CCcEEcHHHHHhhhhh
Confidence            4455666776  66665442 33  33  45554 667899999999998  788875 666  2246777766655444


Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG  214 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  214 (396)
                      .+++|+|||+|.+|+|+|..|++.+.+|+++.|.+.. +|..    +         .         .+.+.         
T Consensus       168 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~~----~---------~---------~~~~~---------  215 (464)
T 2eq6_A          168 LPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEI-LPQG----D---------P---------ETAAL---------  215 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-STTS----C---------H---------HHHHH---------
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcc-cccc----C---------H---------HHHHH---------
Confidence            5799999999999999999999999999999987631 1210    0         0         11111         


Q ss_pred             CCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeC--C--eEEec-C--Cc--EecCcEEEEccCCCCCC
Q psy2343         215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNG--N--IVHFV-D--DT--HIEVDTIIYATGYNRHF  283 (396)
Q Consensus       215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~--~--~v~~~-d--G~--~~~~D~VI~aTG~~~~~  283 (396)
                                            +.+.+.+..|++.  ..|++++.  +  .|.+. +  |+  ++++|.||+|||++|+.
T Consensus       216 ----------------------l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~  273 (464)
T 2eq6_A          216 ----------------------LRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRT  273 (464)
T ss_dssp             ----------------------HHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESC
T ss_pred             ----------------------HHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCC
Confidence                                  1111112234432  34666643  2  25665 6  87  79999999999999998


Q ss_pred             CCC--Cccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         284 PFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       284 ~~l--~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      +++  +...+..+ ++.+.+.+. +.++.|+||++||+.......+.|..||+.+|.++.|.
T Consensus       274 ~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~Iya~GD~~~~~~l~~~A~~~g~~aa~~i~g~  334 (464)
T 2eq6_A          274 EGLGLEKAGVKVDERGFIRVNAR-METSVPGVYAIGDAARPPLLAHKAMREGLIAAENAAGK  334 (464)
T ss_dssp             TTSSHHHHTCCBCTTSCBCCCTT-CBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred             CCCChhhcCceecCCCCEEECCC-cccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence            875  33345543 355666655 56899999999999876667888999999999999875

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.84  E-value=6e-20  Score=180.03  Aligned_cols=220  Identities=14%  Similarity=0.195  Sum_probs=150.9

Q ss_pred             HHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCC-CCCCcccceeecccCCCCCC
Q psy2343          55 LRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN-YSGYFSGEILHSMDYKSPDQ  133 (396)
Q Consensus        55 l~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~-~~g~~~g~~~hs~~~~~~~~  133 (396)
                      ++.++++.++.  ++.++.+. ++  .  ++|++++ .++.||+||||||+  .|..|+ ++  +.+.++++.++.....
T Consensus       102 ~~~~~~~~gv~--~~~g~~~~-~~--~--~~v~v~~-~~~~~d~lviATGs--~p~~~~~~~--~~~~v~~~~~~~~~~~  169 (458)
T 1lvl_A          102 VAALLKKHGVK--VVHGWAKV-LD--G--KQVEVDG-QRIQCEHLLLATGS--SSVELPMLP--LGGPVISSTEALAPKA  169 (458)
T ss_dssp             HHHHHHHTTCE--EECSCEEE-EE--T--TEEEETT-EEEECSEEEECCCE--EECCBTTBC--CBTTEECHHHHTCCSS
T ss_pred             HHHHHHhCCcE--EEEEEEEE-cc--C--CEEEEee-EEEEeCEEEEeCCC--CCCCCCCCC--ccCcEecHHHHhhhhc
Confidence            34556677776  66666543 32  2  3566655 66899999999999  787765 55  2335777776655433


Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFD  213 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  213 (396)
                       .+|+|+|||+|.+|+|+|..|++.+.+|+++.+.+.. +|.    .+         .         .+.+.        
T Consensus       170 -~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l~~----~~---------~---------~~~~~--------  217 (458)
T 1lvl_A          170 -LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI-LPT----YD---------S---------ELTAP--------  217 (458)
T ss_dssp             -CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS-STT----SC---------H---------HHHHH--------
T ss_pred             -cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcc-ccc----cC---------H---------HHHHH--------
Confidence             5799999999999999999999999999999998642 121    00         0         11111        


Q ss_pred             CCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCeEEec--CC--cEecCcEEEEccCCCCCCCCC-
Q psy2343         214 GVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNIVHFV--DD--THIEVDTIIYATGYNRHFPFI-  286 (396)
Q Consensus       214 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~v~~~--dG--~~~~~D~VI~aTG~~~~~~~l-  286 (396)
                                             +.+.+.+..|++  ...|++++.+.+.+.  +|  +.+++|.||+|||++|+.+++ 
T Consensus       218 -----------------------l~~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~  274 (458)
T 1lvl_A          218 -----------------------VAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFN  274 (458)
T ss_dssp             -----------------------HHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCCEEECCSSSS
T ss_pred             -----------------------HHHHHHHCCCEEEECCEEEEEEeCCEEEEECCCceEEEECCEEEECcCCCcCCCCCC
Confidence                                   111111113333  335666665335444  67  579999999999999998874 


Q ss_pred             -CcccccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         287 -DKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       287 -~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                       +...+..+++.+.+... +.++.|+||++||+.......+.|..||+.+|.++.|.
T Consensus       275 ~~~~g~~~~~~~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~  330 (458)
T 1lvl_A          275 LECLDLKMNGAAIAIDER-CQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGK  330 (458)
T ss_dssp             GGGSCCCEETTEECCCTT-CBCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred             cHhcCCcccCCEEeECCC-CcCCCCCEEEeeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence             44445544335666555 56889999999999876667889999999999999874

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.84  E-value=7.3e-21  Score=189.29  Aligned_cols=271  Identities=15%  Similarity=0.092  Sum_probs=167.6

Q ss_pred             CccccccCCCCCCCCCCceeeecCCC----ccccCCCCCCCCCCCCCChHHHHHHHHHHHHHc-----------CCCCce
Q psy2343           4 DLGGVWNSQASCGRVYPSLHLISPKF----NTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKF-----------DVYNHS   68 (396)
Q Consensus         4 ~iGG~W~~~~~~~~~y~~~~~~~~~~----~~~~~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~-----------~l~~~i   68 (396)
                      .+||+|.+.    .|+|+..+..+..    ...+.+|.++...+..+..+.+.+|.+.+.+++           ++.  +
T Consensus        74 ~~GGtc~~~----GciPsk~l~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~--~  147 (519)
T 3qfa_A           74 GLGGTCVNV----GCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVV--Y  147 (519)
T ss_dssp             CTTCHHHHH----SHHHHHHHHHHHHHHHHHHHHHHTTBCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--E
T ss_pred             CcccccCCc----CccchHHHHHHHHHHHHHHHHHhcCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--E
Confidence            689999765    2455433222211    112223333322223455667777776655432           332  2


Q ss_pred             EeCcEEEEEEEeCCeEEEEEccCc--EEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCC
Q psy2343          69 IFNTEVINLEQYEDIWEVELSNGK--KKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGN  146 (396)
Q Consensus        69 ~~~t~V~~v~~~~~~~~V~~~~g~--~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~  146 (396)
                       +..++..++  .+.+.|.+.+|+  ++.||+||||||+  .|..|++||.- ..++++.++.... ...++|+|||+|.
T Consensus       148 -i~g~a~~~d--~~~v~v~~~~g~~~~i~~d~lViATGs--~p~~p~i~G~~-~~~~t~~~~~~l~-~~~~~vvVIGgG~  220 (519)
T 3qfa_A          148 -ENAYGQFIG--PHRIKATNNKGKEKIYSAERFLIATGE--RPRYLGIPGDK-EYCISSDDLFSLP-YCPGKTLVVGASY  220 (519)
T ss_dssp             -ECSEEEEEE--TTEEEEECTTCCCCEEEEEEEEECCCE--EECCCCCTTHH-HHCBCHHHHTTCS-SCCCSEEEECCSH
T ss_pred             -EEEEEEEee--CCEEEEEcCCCCEEEEECCEEEEECCC--CcCCCCCCCcc-CceEcHHHHhhhh-hcCCeEEEECCcH
Confidence             233343333  456777766664  6899999999998  89999999811 1244555544433 3456799999999


Q ss_pred             cHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy2343         147 SGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPL  226 (396)
Q Consensus       147 sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  226 (396)
                      +|+|+|..+++.+.+|+++.|+.  ++|..    +.                  .+.+.                     
T Consensus       221 ig~E~A~~l~~~G~~Vtlv~~~~--~l~~~----d~------------------~~~~~---------------------  255 (519)
T 3qfa_A          221 VALECAGFLAGIGLDVTVMVRSI--LLRGF----DQ------------------DMANK---------------------  255 (519)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESSC--SSTTS----CH------------------HHHHH---------------------
T ss_pred             HHHHHHHHHHHcCCeEEEEeccc--ccccC----CH------------------HHHHH---------------------
Confidence            99999999999999999999852  22211    00                  11111                     


Q ss_pred             CcccCccCchhhhcccCCCeEecC-----CcceEeC---CeE--E--ecCCc---EecCcEEEEccCCCCCCCC--CCcc
Q psy2343         227 DAAHPIMNSQILYHIGHGDILPKD-----DIKNLNG---NIV--H--FVDDT---HIEVDTIIYATGYNRHFPF--IDKE  289 (396)
Q Consensus       227 ~~~~~~~~~~~~~~i~~g~i~~~~-----~i~~i~~---~~v--~--~~dG~---~~~~D~VI~aTG~~~~~~~--l~~~  289 (396)
                                +.+.+.+..|++..     .|..++.   +.+  .  ..+|.   .+++|.||+|||++|+..+  ++..
T Consensus       256 ----------~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~  325 (519)
T 3qfa_A          256 ----------IGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETV  325 (519)
T ss_dssp             ----------HHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTT
T ss_pred             ----------HHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhc
Confidence                      11111122333321     2333332   222  2  24563   4689999999999999887  4455


Q ss_pred             ccccc--CCccccccccccCCCCcEEEEeccc-CcCchhhHHHHHHHHHHHHHhccc
Q psy2343         290 KLEWK--LGIPDLFIHIAPRNLDNIFFFGFVN-AAAGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       290 ~~~~~--~~~~~l~~~~~~~~~p~l~~iG~~~-~~~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      .++.+  ++.+.+.+. +.++.|+||++||+. ......+.|..||+.+|.++.|..
T Consensus       326 gl~~~~~~G~I~Vd~~-~~Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~~  381 (519)
T 3qfa_A          326 GVKINEKTGKIPVTDE-EQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGS  381 (519)
T ss_dssp             TCCCCTTTCCBCCCTT-SBCSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSCC
T ss_pred             CcEEcCCCCeEeeCCC-CccCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCCC
Confidence            56654  355666655 468999999999997 335677889999999999998753

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.84  E-value=1.5e-21  Score=193.04  Aligned_cols=272  Identities=17%  Similarity=0.115  Sum_probs=169.1

Q ss_pred             CCCccccccCCCCCCCCCCceeeecCCC----ccccCCCCCCCCCCCCCChHHHHHHHHHHHHHc-----------CCCC
Q psy2343           2 ESDLGGVWNSQASCGRVYPSLHLISPKF----NTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKF-----------DVYN   66 (396)
Q Consensus         2 ~~~iGG~W~~~~~~~~~y~~~~~~~~~~----~~~~~~~p~p~~~~~~p~~~~~~~Yl~~~~~~~-----------~l~~   66 (396)
                      +..+||+|.+.    .|+|+..+..+..    ...+..|.++...+..+...++.++.+.+.+++           ++. 
T Consensus        46 ~~~~GGtc~~~----gciPsk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-  120 (488)
T 3dgz_A           46 KWGLGGTCVNV----GCIPKKLMHQAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVK-  120 (488)
T ss_dssp             CCCTTCHHHHH----SHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE-
T ss_pred             cCCcCCeeccc----CCcccHHHHHHHHHHHHHHHHHhcCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE-
Confidence            34699999765    2555443322211    111223333322233456667777766655433           222 


Q ss_pred             ceEeCcEEEEEEEeCCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCC-CCC-CcccceeecccCCCCCCCCCCeEEEE
Q psy2343          67 HSIFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPN-YSG-YFSGEILHSMDYKSPDQIRNKRVLVV  142 (396)
Q Consensus        67 ~i~~~t~V~~v~~~~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~-~~g-~~~g~~~hs~~~~~~~~~~~k~VvVV  142 (396)
                        .+..++..++  .+.+.|.+.+|  .++.||+||||||+  .|..|+ +|| ..  ..+++.++.... ...++|+||
T Consensus       121 --~i~g~~~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs--~p~~p~~i~G~~~--~~~~~~~~~~~~-~~~~~vvVi  191 (488)
T 3dgz_A          121 --YFNIKASFVD--EHTVRGVDKGGKATLLSAEHIVIATGG--RPRYPTQVKGALE--YGITSDDIFWLK-ESPGKTLVV  191 (488)
T ss_dssp             --EECCEEEESS--SSEEEEECTTSCEEEEEEEEEEECCCE--EECCCSSCBTHHH--HCBCHHHHTTCS-SCCCSEEEE
T ss_pred             --EEEEEEEEcc--CCeEEEEeCCCceEEEECCEEEEcCCC--CCCCCCCCCCccc--ccCcHHHHHhhh-hcCCeEEEE
Confidence              1222332221  45667776666  46899999999998  899998 998 22  234554444332 346789999


Q ss_pred             cCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy2343         143 GAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKP  222 (396)
Q Consensus       143 G~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  222 (396)
                      |+|.+|+|+|..+++.+.+|+++.|..  .+|..    +         .         .+.+.                 
T Consensus       192 GgG~ig~E~A~~l~~~g~~Vtlv~~~~--~l~~~----d---------~---------~~~~~-----------------  230 (488)
T 3dgz_A          192 GASYVALECAGFLTGIGLDTTVMMRSI--PLRGF----D---------Q---------QMSSL-----------------  230 (488)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEEESSC--SSTTS----C---------H---------HHHHH-----------------
T ss_pred             CCCHHHHHHHHHHHHcCCceEEEEcCc--ccccC----C---------H---------HHHHH-----------------
Confidence            999999999999999999999999864  12211    1         0         11111                 


Q ss_pred             CCCCCcccCccCchhhhcccCCCeEe--cCCcceEe---CC--eEEecC---Cc--EecCcEEEEccCCCCCCCCC--Cc
Q psy2343         223 DHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLN---GN--IVHFVD---DT--HIEVDTIIYATGYNRHFPFI--DK  288 (396)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~---~~--~v~~~d---G~--~~~~D~VI~aTG~~~~~~~l--~~  288 (396)
                                    +.+.+....|++  ...+.+++   ++  .|.+.+   |+  .+++|.||+|||++|+..+|  +.
T Consensus       231 --------------l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~  296 (488)
T 3dgz_A          231 --------------VTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEK  296 (488)
T ss_dssp             --------------HHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGG
T ss_pred             --------------HHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccc
Confidence                          111112223333  23455553   22  255554   55  37899999999999998874  44


Q ss_pred             cccccc--CCccccccccccCCCCcEEEEecccC-cCchhhHHHHHHHHHHHHHhccc
Q psy2343         289 EKLEWK--LGIPDLFIHIAPRNLDNIFFFGFVNA-AAGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       289 ~~~~~~--~~~~~l~~~~~~~~~p~l~~iG~~~~-~~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      ..+..+  ++.+.+... +.++.|+||++||+.. .....+.|..||+.+|.++.+..
T Consensus       297 ~g~~~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~  353 (488)
T 3dgz_A          297 AGISTNPKNQKIIVDAQ-EATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKS  353 (488)
T ss_dssp             GTCCBCSSSCCBCCCTT-SBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSCC
T ss_pred             cCcEecCCCCeEeECCC-CccCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcCCC
Confidence            455554  455666554 4689999999999963 34567789999999999998753

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.83  E-value=4.2e-20  Score=182.09  Aligned_cols=205  Identities=15%  Similarity=0.085  Sum_probs=144.2

Q ss_pred             CCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcC
Q psy2343          81 EDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH  158 (396)
Q Consensus        81 ~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~  158 (396)
                      .+.+.|...+|  .++.||+||+|||.  .|..|+.++.....++++.+.... ...+++|+|||+|.+|+|+|..+++.
T Consensus       126 ~~~~~v~~~~g~~~~~~~d~lvlAtG~--~p~~~~~~~~~~~~v~~~~~~~~~-~~~~~~v~ViGgG~~g~e~A~~l~~~  202 (476)
T 3lad_A          126 GKKVEVTAADGSSQVLDTENVILASGS--KPVEIPPAPVDQDVIVDSTGALDF-QNVPGKLGVIGAGVIGLELGSVWARL  202 (476)
T ss_dssp             TTCEEEECTTSCEEEECCSCEEECCCE--EECCCTTSCCCSSSEEEHHHHTSC-SSCCSEEEEECCSHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCceEEEEcCEEEEcCCC--CCCCCCCCCCCcccEEechhhhcc-ccCCCeEEEECCCHHHHHHHHHHHHc
Confidence            56788887777  46899999999998  777665544222346666655443 34578999999999999999999999


Q ss_pred             CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhh
Q psy2343         159 SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQIL  238 (396)
Q Consensus       159 ~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  238 (396)
                      +.+|+++.|.+.. +|..    +         .         .+.+                               .+.
T Consensus       203 g~~Vtlv~~~~~~-l~~~----~---------~---------~~~~-------------------------------~l~  228 (476)
T 3lad_A          203 GAEVTVLEAMDKF-LPAV----D---------E---------QVAK-------------------------------EAQ  228 (476)
T ss_dssp             TCEEEEEESSSSS-STTS----C---------H---------HHHH-------------------------------HHH
T ss_pred             CCcEEEEecCCCc-Cccc----C---------H---------HHHH-------------------------------HHH
Confidence            9999999998632 1110    0         0         1111                               111


Q ss_pred             hcccCCCeEe--cCCcceEeCC----eEEecCC---cEecCcEEEEccCCCCCCCC--CCcccccccC-Ccccccccccc
Q psy2343         239 YHIGHGDILP--KDDIKNLNGN----IVHFVDD---THIEVDTIIYATGYNRHFPF--IDKEKLEWKL-GIPDLFIHIAP  306 (396)
Q Consensus       239 ~~i~~g~i~~--~~~i~~i~~~----~v~~~dG---~~~~~D~VI~aTG~~~~~~~--l~~~~~~~~~-~~~~l~~~~~~  306 (396)
                      +.+.+..|++  ...|++++..    .|.+.++   +.+++|.||+|||++|+.++  ++...+..+. +.+.+.+. +.
T Consensus       229 ~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~-~~  307 (476)
T 3lad_A          229 KILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDY-CA  307 (476)
T ss_dssp             HHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTT-SB
T ss_pred             HHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCC-cc
Confidence            2222234444  3456666522    3667665   56899999999999999875  4444555543 45666554 56


Q ss_pred             CCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343         307 RNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       307 ~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      ++.|+||++||+.......+.|..||+.+|..+.|..
T Consensus       308 t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~  344 (476)
T 3lad_A          308 TSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHK  344 (476)
T ss_dssp             CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred             cCCCCEEEEEccCCCcccHHHHHHHHHHHHHHhcCCC
Confidence            8999999999998666678899999999999998864

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.83  E-value=2.4e-20  Score=183.11  Aligned_cols=225  Identities=12%  Similarity=0.036  Sum_probs=154.2

Q ss_pred             HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE-ccCcEEEcCEEEEcccCCCCCC-CCCCCCCcccceeecccC
Q psy2343          51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGKKKKYDFIAVCNGAQRVAR-YPNYSGYFSGEILHSMDY  128 (396)
Q Consensus        51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~-~~g~~~~~d~vvvAtG~~~~p~-~P~~~g~~~g~~~hs~~~  128 (396)
                      +..++..+.++.++.  +..+ ++..++    .+.|.+ .+++++.||+||+|||.  .|. .|.++|..  .++++.++
T Consensus        95 ~~~~~~~~~~~~gv~--~~~g-~~~~i~----~~~v~~~~~~~~~~~d~lviAtG~--~p~~~p~i~G~~--~~~~~~~~  163 (463)
T 4dna_A           95 LEGLYRKGLANAGAE--ILDT-RAELAG----PNTVKLLASGKTVTAERIVIAVGG--HPSPHDALPGHE--LCITSNEA  163 (463)
T ss_dssp             HHHHHHHHHHHHTCE--EEES-CEEESS----SSEEEETTTTEEEEEEEEEECCCE--EECCCTTSTTGG--GCBCHHHH
T ss_pred             HHHHHHHHHHhCCCE--EEEE-EEEEee----CCEEEEecCCeEEEeCEEEEecCC--CcccCCCCCCcc--ccccHHHH
Confidence            334445555555654  4434 333332    246666 46777999999999998  888 99999821  23444444


Q ss_pred             CCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHH
Q psy2343         129 KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFK  208 (396)
Q Consensus       129 ~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  208 (396)
                      .... ..+++|+|||+|.+|+|+|..+++.+.+|+++.|.+... |..    +         .         .+.+.   
T Consensus       164 ~~~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l-~~~----~---------~---------~~~~~---  216 (463)
T 4dna_A          164 FDLP-ALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL-SRF----D---------Q---------DMRRG---  216 (463)
T ss_dssp             TTCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTS----C---------H---------HHHHH---
T ss_pred             hhhh-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-ccc----C---------H---------HHHHH---
Confidence            3332 347899999999999999999999999999999876321 110    0         0         11111   


Q ss_pred             HhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC-----eEE-ecCCcEecCcEEEEccCCC
Q psy2343         209 LAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN-----IVH-FVDDTHIEVDTIIYATGYN  280 (396)
Q Consensus       209 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~-----~v~-~~dG~~~~~D~VI~aTG~~  280 (396)
                                                  +.+.+....|++  ...|++++.+     .|. +.||+ +++|.||+|||++
T Consensus       217 ----------------------------l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~  267 (463)
T 4dna_A          217 ----------------------------LHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRM  267 (463)
T ss_dssp             ----------------------------HHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEE
T ss_pred             ----------------------------HHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcc
Confidence                                        111222223443  3467777532     477 78888 9999999999999


Q ss_pred             CCCCC--CCcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343         281 RHFPF--IDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       281 ~~~~~--l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      |+..+  ++...++.+. +.+.+.+. +.++.|+||++||+.......+.|..||+.+|.++.|..
T Consensus       268 p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~  332 (463)
T 4dna_A          268 PNTNGLGLEAAGVRTNELGAIIVDAF-SRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNN  332 (463)
T ss_dssp             ESCTTSSTGGGTCCBCTTSCBCCCTT-CBCSSTTEEECSGGGSSCCCHHHHHHHHHHHHHHHHSSC
T ss_pred             cCCCCCCccccCceECCCCCEeECcC-CCCCCCCEEEEEecCCCCCChHHHHHHHHHHHHHHcCCC
Confidence            99887  4445555543 55666655 468999999999998766778899999999999998753

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.83  E-value=8.8e-20  Score=179.35  Aligned_cols=208  Identities=15%  Similarity=0.126  Sum_probs=143.9

Q ss_pred             EEEEEEEeCCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHH
Q psy2343          73 EVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCD  150 (396)
Q Consensus        73 ~V~~v~~~~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d  150 (396)
                      +|..++  .+.++|.+.+|  +++.||+||+|||+  .|+.|+++|.....++++.+..+.. ..+|+|+|||+|.+|+|
T Consensus       116 ~~~~~~--~~~~~v~~~~g~~~~~~~d~lviAtGs--~p~~p~i~G~~~~~~~~~~~~~~~~-~~~~~vvViGgG~~g~E  190 (467)
T 1zk7_A          116 EARFKD--DQSLTVRLNEGGERVVMFDRCLVATGA--SPAVPPIPGLKESPYWTSTEALASD-TIPERLAVIGSSVVALE  190 (467)
T ss_dssp             EEEEEE--TTEEEEEETTSSEEEEECSEEEECCCE--EECCCCCTTTTTSCCBCHHHHHHCS-SCCSEEEEECCSHHHHH
T ss_pred             EEEEcc--CCEEEEEeCCCceEEEEeCEEEEeCCC--CCCCCCCCCCCcCceecHHHHhccc-ccCCEEEEECCCHHHHH
Confidence            344444  56788888777  56899999999998  8999999982111345554443332 24799999999999999


Q ss_pred             HHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCccc
Q psy2343         151 IAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAH  230 (396)
Q Consensus       151 ~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  230 (396)
                      +|..+++.+.+|+++.|.+.. +|     .+.                  .+.+.                         
T Consensus       191 ~A~~l~~~g~~Vtlv~~~~~~-l~-----~~~------------------~~~~~-------------------------  221 (467)
T 1zk7_A          191 LAQAFARLGSKVTVLARNTLF-FR-----EDP------------------AIGEA-------------------------  221 (467)
T ss_dssp             HHHHHHHTTCEEEEECSSCTT-TT-----SCH------------------HHHHH-------------------------
T ss_pred             HHHHHHHcCCEEEEEEECCcc-CC-----CCH------------------HHHHH-------------------------
Confidence            999999999999999987632 11     000                  11111                         


Q ss_pred             CccCchhhhcccCCCeEe--cCCcceEeC--C--eEEecCCcEecCcEEEEccCCCCCCCCC--Cccccccc-CCccccc
Q psy2343         231 PIMNSQILYHIGHGDILP--KDDIKNLNG--N--IVHFVDDTHIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLF  301 (396)
Q Consensus       231 ~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~--~v~~~dG~~~~~D~VI~aTG~~~~~~~l--~~~~~~~~-~~~~~l~  301 (396)
                            +.+.+.+..|++  ...|++++.  .  .|.+. +.++++|.||+|||++++..++  +...++.+ ++.+.+.
T Consensus       222 ------l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd  294 (467)
T 1zk7_A          222 ------VTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVID  294 (467)
T ss_dssp             ------HHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCC
T ss_pred             ------HHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEEC
Confidence                  111111123443  345666642  2  24444 5679999999999999998764  34445554 3446665


Q ss_pred             cccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         302 IHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       302 ~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      +. +.++.|+||++||+.......+.|..||+.+|.++.+.
T Consensus       295 ~~-~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~  334 (467)
T 1zk7_A          295 QG-MRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG  334 (467)
T ss_dssp             TT-CBCSSTTEEECSTTBSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred             CC-cccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence            54 57889999999999876667888999999999998765

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.82  E-value=1.1e-20  Score=184.12  Aligned_cols=242  Identities=14%  Similarity=0.148  Sum_probs=164.6

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccce
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEI  122 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~  122 (396)
                      ....+++..++..++++.++.  + ++++|+.|+.+++  +|++++++++.||+||+|||.  .|+.|.+||  .+.+..
T Consensus        55 ~~~~~~~~~~l~~~~~~~gv~--~-~~~~v~~id~~~~--~V~~~~g~~i~~d~lviAtG~--~~~~~~ipG~~~~~~~~  127 (437)
T 3sx6_A           55 WKERDDIAFPIRHYVERKGIH--F-IAQSAEQIDAEAQ--NITLADGNTVHYDYLMIATGP--KLAFENVPGSDPHEGPV  127 (437)
T ss_dssp             SSCHHHHEEECHHHHHTTTCE--E-ECSCEEEEETTTT--EEEETTSCEEECSEEEECCCC--EECGGGSTTCSTTTSSE
T ss_pred             ccCHHHHHHHHHHHHHHCCCE--E-EEeEEEEEEcCCC--EEEECCCCEEECCEEEECCCC--CcCcccCCCCCcccCcc
Confidence            345678888888999888876  4 3679999987544  788888888999999999999  888888998  333544


Q ss_pred             eecccCCCCCCC--------CCCeEEEEcCCCcH------HHHHHHHh----cCCCc-----EEEEeccCceeecCCCCC
Q psy2343         123 LHSMDYKSPDQI--------RNKRVLVVGAGNSG------CDIAVDAS----HHSEK-----VYHSTRRGYHYYPKFIDG  179 (396)
Q Consensus       123 ~hs~~~~~~~~~--------~~k~VvVVG~G~sa------~d~a~~l~----~~~~~-----V~l~~r~~~~~~p~~~~~  179 (396)
                      ++.+.+.+...+        ++++++|||+|.+|      +|+|..++    +.+.+     |+++.+.+.. .+....+
T Consensus       128 ~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~-~~~~l~~  206 (437)
T 3sx6_A          128 QSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYI-GHLGIQG  206 (437)
T ss_dssp             ECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSST-TCTTTTC
T ss_pred             eecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccc-cccccCc
Confidence            444444332211        25678999998776      88886554    43332     9999987631 0000000


Q ss_pred             CChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeC
Q psy2343         180 KPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNG  257 (396)
Q Consensus       180 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~  257 (396)
                      .+                                                  .....+.+.+.+..|++.  ..|+++++
T Consensus       207 ~~--------------------------------------------------~~~~~~~~~l~~~gI~~~~~~~v~~v~~  236 (437)
T 3sx6_A          207 VG--------------------------------------------------DSKGILTKGLKEEGIEAYTNCKVTKVED  236 (437)
T ss_dssp             CT--------------------------------------------------THHHHHHHHHHHTTCEEECSEEEEEEET
T ss_pred             ch--------------------------------------------------HHHHHHHHHHHHCCCEEEcCCEEEEEEC
Confidence            00                                                  001112222333345543  46888888


Q ss_pred             CeEEecC---------CcEecCcEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcC------
Q psy2343         258 NIVHFVD---------DTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAA------  322 (396)
Q Consensus       258 ~~v~~~d---------G~~~~~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~------  322 (396)
                      +.+.+++         |+++++|.|++|+|+++..++.+...+..+++.+.+...+..+++|+||++||+....      
T Consensus       237 ~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~  316 (437)
T 3sx6_A          237 NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTP  316 (437)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTTBCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSCCCS
T ss_pred             CeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccccCCCCcEEeChhccCCCCCCEEEEEEEeccCCcCCCc
Confidence            8888765         6678999999999999874444333443345678888776666999999999997532      


Q ss_pred             ------chhhHHHHHHHHHHHHHhcccc
Q psy2343         323 ------GLGDGLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       323 ------~~~~~ae~qa~~~a~~l~~~~~  344 (396)
                            .....|..||+.+|++|...+.
T Consensus       317 ~~~~~pk~~~~A~~qg~~aA~ni~~~l~  344 (437)
T 3sx6_A          317 VPTGAPKTGYMIESMVSAAVHNIKADLE  344 (437)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence                  2567899999999999886654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.82  E-value=5.3e-20  Score=181.46  Aligned_cols=200  Identities=17%  Similarity=0.124  Sum_probs=139.2

Q ss_pred             CeEEEEEccCcEEEcCEEEEcccCCCCCCCC---CCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcC
Q psy2343          82 DIWEVELSNGKKKKYDFIAVCNGAQRVARYP---NYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH  158 (396)
Q Consensus        82 ~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P---~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~  158 (396)
                      +.+.|+ .+++++.||+||||||+  .|..|   ++||..  .++++.++..... .+|+|+|||+|.+|+|+|..+++.
T Consensus       136 ~~~~v~-~~g~~~~~d~lviAtG~--~p~~p~~~~i~G~~--~~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~  209 (478)
T 3dk9_A          136 PKPTIE-VSGKKYTAPHILIATGG--MPSTPHESQIPGAS--LGITSDGFFQLEE-LPGRSVIVGAGYIAVEMAGILSAL  209 (478)
T ss_dssp             SSCEEE-ETTEEEECSCEEECCCE--EECCCCTTTSTTGG--GSBCHHHHTTCCS-CCSEEEEECCSHHHHHHHHHHHHT
T ss_pred             CeEEEE-ECCEEEEeeEEEEccCC--CCCCCCcCCCCCCc--eeEchHHhhchhh-cCccEEEECCCHHHHHHHHHHHHc
Confidence            446676 35667999999999998  89988   888822  2345554444333 378999999999999999999999


Q ss_pred             CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhh
Q psy2343         159 SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQIL  238 (396)
Q Consensus       159 ~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  238 (396)
                      +.+|+++.|.+... |..    +         .         .+.+.                               +.
T Consensus       210 g~~Vtlv~~~~~~l-~~~----d---------~---------~~~~~-------------------------------~~  235 (478)
T 3dk9_A          210 GSKTSLMIRHDKVL-RSF----D---------S---------MISTN-------------------------------CT  235 (478)
T ss_dssp             TCEEEEECSSSSSC-TTS----C---------H---------HHHHH-------------------------------HH
T ss_pred             CCeEEEEEeCCccc-ccc----C---------H---------HHHHH-------------------------------HH
Confidence            99999999976421 211    0         0         11111                               11


Q ss_pred             hcccCCCeEec--CCcceEeC--C----eEEecC---C----cEecCcEEEEccCCCCCCCCC--Cccccccc-CCcccc
Q psy2343         239 YHIGHGDILPK--DDIKNLNG--N----IVHFVD---D----THIEVDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDL  300 (396)
Q Consensus       239 ~~i~~g~i~~~--~~i~~i~~--~----~v~~~d---G----~~~~~D~VI~aTG~~~~~~~l--~~~~~~~~-~~~~~l  300 (396)
                      +.+.+..|++.  ..|++++.  +    .|.+.|   |    +.+++|.||+|||++|+..+|  +...++.+ ++.+.+
T Consensus       236 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~v  315 (478)
T 3dk9_A          236 EELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIV  315 (478)
T ss_dssp             HHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCC
T ss_pred             HHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEee
Confidence            12222234433  34556642  2    255665   2    568999999999999998854  44445553 455666


Q ss_pred             ccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         301 FIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       301 ~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      ... +.++.|+||++||+.......+.|..||+.+|..+.+.
T Consensus       316 d~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~  356 (478)
T 3dk9_A          316 DEF-QNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEY  356 (478)
T ss_dssp             CTT-CBCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCC-cccCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHcCC
Confidence            554 47899999999999866667888999999999999876

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.81  E-value=4.1e-21  Score=185.70  Aligned_cols=235  Identities=14%  Similarity=0.108  Sum_probs=161.6

Q ss_pred             CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc----EEEcCEEEEcccCCCCCCCCCCCC-Cc
Q psy2343          44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK----KKKYDFIAVCNGAQRVARYPNYSG-YF  118 (396)
Q Consensus        44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~----~~~~d~vvvAtG~~~~p~~P~~~g-~~  118 (396)
                      .....+++..++.+.++++++.  ++.+ +|+.++.+++  .|+++++.    ++.||+||+|||.  .|+.|.+|| ..
T Consensus        51 ~~~~~~~~~~~~~~~~~~~gv~--~~~~-~v~~i~~~~~--~V~~~~g~~~~~~~~~d~lViAtG~--~~~~~~ipG~~~  123 (409)
T 3h8l_A           51 GVRDVDELKVDLSEALPEKGIQ--FQEG-TVEKIDAKSS--MVYYTKPDGSMAEEEYDYVIVGIGA--HLATELVKGWDK  123 (409)
T ss_dssp             SCCCCCCEEEEHHHHTGGGTCE--EEEC-EEEEEETTTT--EEEEECTTSCEEEEECSEEEECCCC--EECGGGSBTHHH
T ss_pred             CCcCHHHHHHHHHHHHhhCCeE--EEEe-eEEEEeCCCC--EEEEccCCcccceeeCCEEEECCCC--CcCccCCCChhh
Confidence            3445566777788888888886  6666 9999987655  45555544    3889999999999  888888888 32


Q ss_pred             ccceeecccCCCCCCCC------CCeEEEEcCC-------------------C------cHHHHHHHHh----cCC----
Q psy2343         119 SGEILHSMDYKSPDQIR------NKRVLVVGAG-------------------N------SGCDIAVDAS----HHS----  159 (396)
Q Consensus       119 ~g~~~hs~~~~~~~~~~------~k~VvVVG~G-------------------~------sa~d~a~~l~----~~~----  159 (396)
                        ...|.+.+.+...++      .++++|||+|                   .      .++|+|..++    +.+    
T Consensus       124 --~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~  201 (409)
T 3h8l_A          124 --YGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDK  201 (409)
T ss_dssp             --HCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTT
T ss_pred             --cCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCC
Confidence              234444443332222      2577899999                   2      2678776554    444    


Q ss_pred             CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhh
Q psy2343         160 EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILY  239 (396)
Q Consensus       160 ~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  239 (396)
                      .+|+++.+.+  .+|..    +         .         .+.+.                               +.+
T Consensus       202 ~~v~~~~~~~--~l~~~----~---------~---------~~~~~-------------------------------~~~  226 (409)
T 3h8l_A          202 VHVTVFSPGE--YLSDL----S---------P---------NSRKA-------------------------------VAS  226 (409)
T ss_dssp             EEEEEECSSS--SSTTB----C---------H---------HHHHH-------------------------------HHH
T ss_pred             eEEEEEeCCc--ccccc----C---------H---------HHHHH-------------------------------HHH
Confidence            3799998875  22211    0         0         11111                               111


Q ss_pred             cccCCCeEe--cCCcceEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCcc--cccccCCccccccccccCCCCcEEEE
Q psy2343         240 HIGHGDILP--KDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKE--KLEWKLGIPDLFIHIAPRNLDNIFFF  315 (396)
Q Consensus       240 ~i~~g~i~~--~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~--~~~~~~~~~~l~~~~~~~~~p~l~~i  315 (396)
                      .+++..|++  ...|+++++++|+++||+++++|.||+|+|++++ +++...  .+..+++.+.+...+..+++||||++
T Consensus       227 ~l~~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l~~~~G~i~vd~~~~~~~~~~vfa~  305 (409)
T 3h8l_A          227 IYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGN-PALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAV  305 (409)
T ss_dssp             HHHHHTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECCEECC-HHHHTSCGGGSCTTSCBCBBTTSBBSSCTTEEEC
T ss_pred             HHHHCCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCCCCcc-HHHHhccccCcCCCCCEEeCcccccCCCCCEEEe
Confidence            122224554  3568999999999999999999999999999987 566544  33334566888877666689999999


Q ss_pred             ecccCc--CchhhHHHHHHHHHHHHHhccc
Q psy2343         316 GFVNAA--AGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       316 G~~~~~--~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      ||+...  ......|+.||+.+|++|.+.+
T Consensus       306 GD~~~~~~~~~~~~A~~q~~~aa~~i~~~l  335 (409)
T 3h8l_A          306 GDANSMTVPKLGYLAVMTGRIAAQHLANRL  335 (409)
T ss_dssp             GGGBTTCCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ehhccCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            999853  4567789999999999998876

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.81  E-value=5.7e-19  Score=174.29  Aligned_cols=227  Identities=15%  Similarity=0.096  Sum_probs=152.1

Q ss_pred             HHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc-cCcEEEcCEEEEcccCCCCCC-CCCCCCCcccceeeccc
Q psy2343          50 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NGKKKKYDFIAVCNGAQRVAR-YPNYSGYFSGEILHSMD  127 (396)
Q Consensus        50 ~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~-~g~~~~~d~vvvAtG~~~~p~-~P~~~g~~~g~~~hs~~  127 (396)
                      .+.+++....+..++.  +..+ ++..++  ..  .|.+. ++..+.||+||+|||.  .|. .|.++|..  .++++.+
T Consensus       115 ~~~~~~~~~~~~~~v~--~~~g-~~~~i~--~~--~v~v~~~~~~~~~d~lviAtG~--~p~~~p~i~G~~--~~~~~~~  183 (484)
T 3o0h_A          115 RLEGLYREGLQNSNVH--IYES-RAVFVD--EH--TLELSVTGERISAEKILIATGA--KIVSNSAIKGSD--LCLTSNE  183 (484)
T ss_dssp             HHHHHHHHHHHHTTCE--EEES-CEEEEE--TT--EEEETTTCCEEEEEEEEECCCE--EECCC--CBTGG--GSBCTTT
T ss_pred             HHHHHHHHHHHhCCCE--EEEe-EEEEee--CC--EEEEecCCeEEEeCEEEEccCC--CcccCCCCCCcc--ccccHHH
Confidence            3444455555666664  4444 444444  22  55565 6777999999999998  788 88888821  2344443


Q ss_pred             CCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHH
Q psy2343         128 YKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVF  207 (396)
Q Consensus       128 ~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  207 (396)
                      +... ...+++|+|||+|.+|+|+|..+++.+.+|+++.|.+.. +|..    +         .         .+...  
T Consensus       184 ~~~~-~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~-l~~~----~---------~---------~~~~~--  237 (484)
T 3o0h_A          184 IFDL-EKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI-LRNF----D---------Y---------DLRQL--  237 (484)
T ss_dssp             GGGC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS-STTS----C---------H---------HHHHH--
T ss_pred             HHhH-HhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc-cccc----C---------H---------HHHHH--
Confidence            3332 234789999999999999999999999999999987632 1110    0         0         11111  


Q ss_pred             HHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCC----eEEecCCcEecCcEEEEccCCCC
Q psy2343         208 KLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGN----IVHFVDDTHIEVDTIIYATGYNR  281 (396)
Q Consensus       208 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~----~v~~~dG~~~~~D~VI~aTG~~~  281 (396)
                                                   +.+.+.+..|++  ...|++++.+    .|.+.||+++++|.||+|||+++
T Consensus       238 -----------------------------l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p  288 (484)
T 3o0h_A          238 -----------------------------LNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVP  288 (484)
T ss_dssp             -----------------------------HHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEE
T ss_pred             -----------------------------HHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCc
Confidence                                         111111113343  3467777543    47889999999999999999999


Q ss_pred             CCCCCC--cccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343         282 HFPFID--KEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       282 ~~~~l~--~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      +..+|.  ...+..+. +.+.+... +.++.|+||++||+.......+.|..||+.+|..+.+..
T Consensus       289 ~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~  352 (484)
T 3o0h_A          289 NTTGLGLERAGVKVNEFGAVVVDEK-MTTNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFENT  352 (484)
T ss_dssp             CCTTCCHHHHTCCBCTTSCBCCCTT-SBCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHC--
T ss_pred             CCCCCChhhcCceECCCCCEeECCC-CCCCCCCEEEEEecCCCCcCHHHHHHHHHHHHHHHcCCC
Confidence            988753  34455543 44555544 568999999999998766778899999999999998753

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.81  E-value=2.2e-20  Score=182.52  Aligned_cols=254  Identities=17%  Similarity=0.191  Sum_probs=149.4

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccc
Q psy2343          43 PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGE  121 (396)
Q Consensus        43 ~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~  121 (396)
                      |+++..+++..|+..+++++++.  ++.+++|      +.  .|+++++. +.||+||+|||+. .|+.|++|| .+.| 
T Consensus        55 p~~~~~~~~~~~~~~~~~~~~v~--~~~~v~v------~~--~v~~~~~~-~~~d~lViAtG~~-~~~~~~ipG~~~~g-  121 (456)
T 1lqt_A           55 PDHPKIKSISKQFEKTAEDPRFR--FFGNVVV------GE--HVQPGELS-ERYDAVIYAVGAQ-SDRMLNIPGEDLPG-  121 (456)
T ss_dssp             TTCTGGGGGHHHHHHHHTSTTEE--EEESCCB------TT--TBCHHHHH-HHSSEEEECCCCC-EECCCCCTTTTSTT-
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCE--EEeeEEE------CC--EEEECCCe-EeCCEEEEeeCCC-CCCCCCCCCCCCCC-
Confidence            45566778999999999887765  5555442      11  24444453 6899999999992 267778898 6555 


Q ss_pred             eeecccC-----------CCCCCCCCCeEEEEcCCCcHHHHHHHHhcC---------------------CCcEEEEeccC
Q psy2343         122 ILHSMDY-----------KSPDQIRNKRVLVVGAGNSGCDIAVDASHH---------------------SEKVYHSTRRG  169 (396)
Q Consensus       122 ~~hs~~~-----------~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~---------------------~~~V~l~~r~~  169 (396)
                      ++++.++           ++...+++++|+|||+|++|+|+|..|++.                     .++|+++.|++
T Consensus       122 v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~  201 (456)
T 1lqt_A          122 SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG  201 (456)
T ss_dssp             EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             cEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCC
Confidence            5565443           333346799999999999999999999974                     46899999987


Q ss_pred             ceeecCCCCCCChhHHHH--hhC--------ccccC---------hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCccc
Q psy2343         170 YHYYPKFIDGKPTPQWML--QLG--------NKFSS---------KEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAH  230 (396)
Q Consensus       170 ~~~~p~~~~~~~~~~~~~--~~p--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  230 (396)
                      ..... +    ....+..  .+|        ..+..         +.....+.+.+.+.......      +        
T Consensus       202 ~~~~~-f----~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~--------  262 (456)
T 1lqt_A          202 PLQAA-F----TTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPR------P--------  262 (456)
T ss_dssp             GGGCC-C----CHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-C------T--------
T ss_pred             hhhhc-c----ChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCC------C--------
Confidence            42110 0    0001000  011        11100         00000001111111110000      0        


Q ss_pred             CccCchhhhcccCCCeEec--CCcceEeCC----eEEec----------------CC--cEecCcEEEEccCCCCCCCCC
Q psy2343         231 PIMNSQILYHIGHGDILPK--DDIKNLNGN----IVHFV----------------DD--THIEVDTIIYATGYNRHFPFI  286 (396)
Q Consensus       231 ~~~~~~~~~~i~~g~i~~~--~~i~~i~~~----~v~~~----------------dG--~~~~~D~VI~aTG~~~~~~~l  286 (396)
                                 ....|.+.  ..+.++.++    +|.+.                +|  +.+++|.||+|+||+++.  +
T Consensus       263 -----------~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~--l  329 (456)
T 1lqt_A          263 -----------GHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP--T  329 (456)
T ss_dssp             -----------TSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC--C
T ss_pred             -----------CCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCC--C
Confidence                       00123332  234444332    24443                45  358999999999999985  2


Q ss_pred             Cccccccc-CCccccccccccCCCCcEEEEecccCcCc-hhhHHHHHHHHHHHHHhccc
Q psy2343         287 DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAG-LGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       287 ~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~-~~~~ae~qa~~~a~~l~~~~  343 (396)
                      .  .+..+ .+++.+......++.|+||++||+..... .+..+..||+.+|..|.+.+
T Consensus       330 ~--gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~~l  386 (456)
T 1lqt_A          330 P--GLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNL  386 (456)
T ss_dssp             T--TSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHHHH
T ss_pred             C--CCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            2  23333 34555555555578999999999975332 34568888888888776554

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.80  E-value=1.8e-19  Score=182.55  Aligned_cols=234  Identities=16%  Similarity=0.144  Sum_probs=147.5

Q ss_pred             CChHHHHHHHHHHHHHcCCCCc-------e-EeCcEEEEEEEeCCeEEEEEccC--cEEEcCEEEEcccCCCCCCCCCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNH-------S-IFNTEVINLEQYEDIWEVELSNG--KKKKYDFIAVCNGAQRVARYPNYS  115 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~-------i-~~~t~V~~v~~~~~~~~V~~~~g--~~~~~d~vvvAtG~~~~p~~P~~~  115 (396)
                      ....++.+|++.+++++.....       + .+...+..++  .....+...+|  .++.||+||||||+  .|+.|++|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~--~~~v~v~~~~g~~~~~~~d~lviAtGs--~p~~p~i~  267 (598)
T 2x8g_A          192 HNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLIS--PHEVQITDKNQKVSTITGNKIILATGE--RPKYPEIP  267 (598)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEE--TTEEEEECTTCCEEEEEEEEEEECCCE--EECCCSST
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcC--CCEEEEEeCCCCeEEEEeCEEEEeCCC--CCCCCCCC
Confidence            4567888888887765321100       1 1122222222  33344444556  35899999999998  89999999


Q ss_pred             C-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCcccc
Q psy2343         116 G-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS  194 (396)
Q Consensus       116 g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~  194 (396)
                      | ..  ..+++.++... ...+++|+|||+|.+|+|+|..|++.+.+|+++.|+.  ++|..    +.            
T Consensus       268 G~~~--~~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~--~l~~~----d~------------  326 (598)
T 2x8g_A          268 GAVE--YGITSDDLFSL-PYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRSI--LLRGF----DQ------------  326 (598)
T ss_dssp             THHH--HCEEHHHHTTC-SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC--SSTTS----CH------------
T ss_pred             Cccc--ceEcHHHHhhC-ccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCc--CcCcC----CH------------
Confidence            8 21  13455444332 3457899999999999999999999999999999862  22211    10            


Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceE--------eC---CeE-
Q psy2343         195 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNL--------NG---NIV-  260 (396)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i--------~~---~~v-  260 (396)
                            .+...+.                               +.+.+..|++.  ..+.++        +.   +.+ 
T Consensus       327 ------~~~~~~~-------------------------------~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~  369 (598)
T 2x8g_A          327 ------QMAEKVG-------------------------------DYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLL  369 (598)
T ss_dssp             ------HHHHHHH-------------------------------HHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEE
T ss_pred             ------HHHHHHH-------------------------------HHHHhCCCEEEECCeEEEEEeccccccccCCCceEE
Confidence                  1111111                               11111122221  112222        11   222 


Q ss_pred             ---EecCCcEec--CcEEEEccCCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEecccCc-CchhhHHHHH
Q psy2343         261 ---HFVDDTHIE--VDTIIYATGYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAA-AGLGDGLRLQ  331 (396)
Q Consensus       261 ---~~~dG~~~~--~D~VI~aTG~~~~~~~l--~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~-~~~~~~ae~q  331 (396)
                         .+.+|+.++  +|.||+|+|++|+.++|  +...++.+ .+.+.+... +.++.|+||++||+... ...++.|..|
T Consensus       370 v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-~~ts~~~VyA~GD~~~~~~~~~~~A~~~  448 (598)
T 2x8g_A          370 VKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDD-EQTTVSNVYAIGDINAGKPQLTPVAIQA  448 (598)
T ss_dssp             EEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTT-SBCSSTTEEECGGGBTTSCCCHHHHHHH
T ss_pred             EEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCC-CcCCCCCEEEEeeecCCCCccHHHHHHh
Confidence               246787654  99999999999998875  33445553 355666655 56899999999999543 4567889999


Q ss_pred             HHHHHHHHhcc
Q psy2343         332 GQFIRSYIQAF  342 (396)
Q Consensus       332 a~~~a~~l~~~  342 (396)
                      |+.+|..+.+.
T Consensus       449 g~~aa~~i~~~  459 (598)
T 2x8g_A          449 GRYLARRLFAG  459 (598)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcC
Confidence            99999999865

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.80  E-value=6.3e-21  Score=188.53  Aligned_cols=221  Identities=14%  Similarity=0.161  Sum_probs=149.4

Q ss_pred             cCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCC----cccceeecccCCCCC-----
Q psy2343          62 FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGY----FSGEILHSMDYKSPD-----  132 (396)
Q Consensus        62 ~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~----~~g~~~hs~~~~~~~-----  132 (396)
                      .++.  ++++++|++|+...  ++|++++|+++.||+||||||+  .|+.|++++.    +...+.+.....+..     
T Consensus       103 ~gv~--~~~g~~v~~id~~~--~~V~~~~g~~i~yd~lviATGs--~p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~~  176 (493)
T 1m6i_A          103 GGVA--VLTGKKVVQLDVRD--NMVKLNDGSQITYEKCLIATGG--TPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKI  176 (493)
T ss_dssp             CEEE--EEETCCEEEEEGGG--TEEEETTSCEEEEEEEEECCCE--EECCCHHHHTSCHHHHHTEEECCSHHHHHHHHHH
T ss_pred             CCeE--EEcCCEEEEEECCC--CEEEECCCCEEECCEEEECCCC--CCCCCCCcccccccccCceEEEcCHHHHHHHHHH
Confidence            4444  77889999998653  4788888888999999999998  7887765541    112222222211111     


Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcC----CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHH
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHH----SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFK  208 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~----~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  208 (396)
                      ...+|+|+|||+|.+|+|+|..|++.    +.+|+++.+.+.. +++.            +|.         .+...   
T Consensus       177 ~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~-~~~~------------l~~---------~~~~~---  231 (493)
T 1m6i_A          177 SREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN-MGKI------------LPE---------YLSNW---  231 (493)
T ss_dssp             HHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST-TTTT------------SCH---------HHHHH---
T ss_pred             hhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccc-cccc------------CCH---------HHHHH---
Confidence            12479999999999999999999873    5679999876421 0100            111         11111   


Q ss_pred             HhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--C--eEEecCCcEecCcEEEEccCCCCC
Q psy2343         209 LAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--N--IVHFVDDTHIEVDTIIYATGYNRH  282 (396)
Q Consensus       209 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~--~v~~~dG~~~~~D~VI~aTG~~~~  282 (396)
                                                  +.+.+.+..|++  ...|+++++  +  .|.+.||+++++|.||+|+|++++
T Consensus       232 ----------------------------~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn  283 (493)
T 1m6i_A          232 ----------------------------TMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPN  283 (493)
T ss_dssp             ----------------------------HHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             ----------------------------HHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCcc
Confidence                                        112222223444  346777753  2  477889999999999999999999


Q ss_pred             CCCCCcccccccC--CccccccccccCCCCcEEEEecccCc---------CchhhHHHHHHHHHHHHHhccc
Q psy2343         283 FPFIDKEKLEWKL--GIPDLFIHIAPRNLDNIFFFGFVNAA---------AGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       283 ~~~l~~~~~~~~~--~~~~l~~~~~~~~~p~l~~iG~~~~~---------~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      ..+++...+..++  +++.+..++. + .|+||++||+...         ...++.|..||+.+|.++.|..
T Consensus       284 ~~l~~~~gl~~~~~~ggi~Vd~~l~-t-~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g~~  353 (493)
T 1m6i_A          284 VELAKTGGLEIDSDFGGFRVNAELQ-A-RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA  353 (493)
T ss_dssp             CTTHHHHTCCBCTTTCSEECCTTCE-E-ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHcCCccccCCCcEEECCCcc-c-CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcCCC
Confidence            8888766666543  5676666654 4 5999999999742         1245689999999999998763

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.78  E-value=1.3e-19  Score=177.18  Aligned_cols=116  Identities=18%  Similarity=0.260  Sum_probs=82.9

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccc
Q psy2343          43 PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGE  121 (396)
Q Consensus        43 ~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~  121 (396)
                      |.++..+++..++..+++++++.  ++++++|.      .  .|++++.. +.||+||+|||+. .++.|++|| ...| 
T Consensus        53 p~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~------~--~V~~~~~~-~~~d~lVlAtGs~-~~~~~~ipG~~~~g-  119 (460)
T 1cjc_A           53 PDHPEVKNVINTFTQTARSDRCA--FYGNVEVG------R--DVTVQELQ-DAYHAVVLSYGAE-DHQALDIPGEELPG-  119 (460)
T ss_dssp             TTCGGGGGHHHHHHHHHTSTTEE--EEBSCCBT------T--TBCHHHHH-HHSSEEEECCCCC-EECCCCCTTTTSTT-
T ss_pred             CCCccHHHHHHHHHHHHHhCCcE--EEeeeEEe------e--EEEeccce-EEcCEEEEecCcC-CCCCCCCCCCCCCc-
Confidence            44555678889999999888876  77776652      1  23333333 6899999999993 247788998 5444 


Q ss_pred             eeecccC----------CCCC-CCCCCeEEEEcCCCcHHHHHHHHhc--------------------C-CCcEEEEeccC
Q psy2343         122 ILHSMDY----------KSPD-QIRNKRVLVVGAGNSGCDIAVDASH--------------------H-SEKVYHSTRRG  169 (396)
Q Consensus       122 ~~hs~~~----------~~~~-~~~~k~VvVVG~G~sa~d~a~~l~~--------------------~-~~~V~l~~r~~  169 (396)
                      ++++.++          .... .+.+|+|+|||+|++|+|+|..|++                    . .++|+++.|++
T Consensus       120 v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~  199 (460)
T 1cjc_A          120 VFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG  199 (460)
T ss_dssp             EEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             EEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCC
Confidence            4554333          2222 3478999999999999999999993                    3 35799999987


Q ss_pred             ce
Q psy2343         170 YH  171 (396)
Q Consensus       170 ~~  171 (396)
                      ..
T Consensus       200 ~~  201 (460)
T 1cjc_A          200 PL  201 (460)
T ss_dssp             GG
T ss_pred             hH
Confidence            43

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.75  E-value=6.4e-18  Score=167.74  Aligned_cols=205  Identities=18%  Similarity=0.136  Sum_probs=138.2

Q ss_pred             CCeEEEEEc----cCcEEEcCEEEEcccCCCCCCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHh
Q psy2343          81 EDIWEVELS----NGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDAS  156 (396)
Q Consensus        81 ~~~~~V~~~----~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~  156 (396)
                      .+...|...    +++++++|++|||||+  +|.+|+..+.....+++|.+.-+... ..++++|||||.+|+|+|..++
T Consensus       167 ~~~v~V~~~~~~~~~~~i~a~~iiIATGs--~P~~P~~~~~~~~~~~ts~~~l~l~~-lP~~lvIIGgG~IGlE~A~~~~  243 (542)
T 4b1b_A          167 KNTVSYYLKGDLSKEETVTGKYILIATGC--RPHIPDDVEGAKELSITSDDIFSLKK-DPGKTLVVGASYVALECSGFLN  243 (542)
T ss_dssp             TTEEEEEEC--CCCEEEEEEEEEEECCCE--EECCCSSSBTHHHHCBCHHHHTTCSS-CCCSEEEECCSHHHHHHHHHHH
T ss_pred             CCcceEeecccCCceEEEeeeeEEeccCC--CCCCCCcccCCCccccCchhhhcccc-CCceEEEECCCHHHHHHHHHHH
Confidence            444455443    2346899999999999  89988654422223455555544433 3579999999999999999999


Q ss_pred             cCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCch
Q psy2343         157 HHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQ  236 (396)
Q Consensus       157 ~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  236 (396)
                      +.+.+||++.|..  .+|..    ..                  .+...+                              
T Consensus       244 ~lG~~VTii~~~~--~L~~~----D~------------------ei~~~l------------------------------  269 (542)
T 4b1b_A          244 SLGYDVTVAVRSI--VLRGF----DQ------------------QCAVKV------------------------------  269 (542)
T ss_dssp             HHTCCEEEEESSC--SSTTS----CH------------------HHHHHH------------------------------
T ss_pred             hcCCeEEEecccc--ccccc----ch------------------hHHHHH------------------------------
Confidence            9999999998753  22321    00                  111111                              


Q ss_pred             hhhcccCCCeE--ecCCcceEeC--C--eEEecCCcEecCcEEEEccCCCCCCCCCCccc--cccc-CCccccccccccC
Q psy2343         237 ILYHIGHGDIL--PKDDIKNLNG--N--IVHFVDDTHIEVDTIIYATGYNRHFPFIDKEK--LEWK-LGIPDLFIHIAPR  307 (396)
Q Consensus       237 ~~~~i~~g~i~--~~~~i~~i~~--~--~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~~--~~~~-~~~~~l~~~~~~~  307 (396)
                       ...+....|.  ....+++++.  +  .|.+.+++.+.+|.|++|||.+|+...|.-+.  +..+ .+.....+..+.|
T Consensus       270 -~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~T  348 (542)
T 4b1b_A          270 -KLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCT  348 (542)
T ss_dssp             -HHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBC
T ss_pred             -HHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccc
Confidence             1111111233  2334555542  2  36678888899999999999999998776443  3333 3444455667789


Q ss_pred             CCCcEEEEecccCc-CchhhHHHHHHHHHHHHHhccc
Q psy2343         308 NLDNIFFFGFVNAA-AGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       308 ~~p~l~~iG~~~~~-~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      +.|+||++||+... ..+.+.+..|++.++..+.+..
T Consensus       349 s~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g~~  385 (542)
T 4b1b_A          349 NIPSIFAVGDVAENVPELAPVAIKAGEILARRLFKDS  385 (542)
T ss_dssp             SSTTEEECTTSBTTCCCCHHHHHHHHHHHHHHHHSCC
T ss_pred             cCCCeEEeccccCCchhHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999754 3577889999999999998753

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.74  E-value=3.9e-19  Score=175.71  Aligned_cols=220  Identities=15%  Similarity=0.186  Sum_probs=142.4

Q ss_pred             CcEEEEEEEeCCeEEEEE------------------ccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccccceeec----cc
Q psy2343          71 NTEVINLEQYEDIWEVEL------------------SNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHS----MD  127 (396)
Q Consensus        71 ~t~V~~v~~~~~~~~V~~------------------~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs----~~  127 (396)
                      ..+|++|+++.+..++..                  .++.++.||+||||||+  .|+.|.+|| .-.+..+.+    ..
T Consensus       115 ~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs--~~~~~~ipG~~e~a~~l~t~~dA~~  192 (502)
T 4g6h_A          115 EAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGA--EPNTFGIPGVTDYGHFLKEIPNSLE  192 (502)
T ss_dssp             EEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCC--EECCTTCTTHHHHCEECSSHHHHHH
T ss_pred             EEEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCc--ccccCCccCcccccCCCCCHHHHHH
Confidence            568899988766544432                  12456899999999999  899999999 211100100    00


Q ss_pred             C--------------CCCC--CCCCCeEEEEcCCCcHHHHHHHHhcCC--------------CcEEEEeccCceeecCCC
Q psy2343         128 Y--------------KSPD--QIRNKRVLVVGAGNSGCDIAVDASHHS--------------EKVYHSTRRGYHYYPKFI  177 (396)
Q Consensus       128 ~--------------~~~~--~~~~k~VvVVG~G~sa~d~a~~l~~~~--------------~~V~l~~r~~~~~~p~~~  177 (396)
                      +              ....  .-...+++|||+|.+|+|+|.+|++..              .+|+++.+.+. ++|.. 
T Consensus       193 ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~-il~~~-  270 (502)
T 4g6h_A          193 IRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPI-VLNMF-  270 (502)
T ss_dssp             HHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSS-SSTTS-
T ss_pred             HHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccc-cccCC-
Confidence            0              0000  012257999999999999999987642              46899988764 22211 


Q ss_pred             CCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceE
Q psy2343         178 DGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNL  255 (396)
Q Consensus       178 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i  255 (396)
                         +         .         .+.+.                               +.+.+++..|++  ...|+++
T Consensus       271 ---~---------~---------~~~~~-------------------------------~~~~L~~~GV~v~~~~~v~~v  298 (502)
T 4g6h_A          271 ---E---------K---------KLSSY-------------------------------AQSHLENTSIKVHLRTAVAKV  298 (502)
T ss_dssp             ---C---------H---------HHHHH-------------------------------HHHHHHHTTCEEETTEEEEEE
T ss_pred             ---C---------H---------HHHHH-------------------------------HHHHHHhcceeeecCceEEEE
Confidence               1         1         11111                               111122223444  4568888


Q ss_pred             eCCeEEe----cCCc----EecCcEEEEccCCCCCCCCCCc----ccccc-cCCccccccccccCCCCcEEEEecccCc-
Q psy2343         256 NGNIVHF----VDDT----HIEVDTIIYATGYNRHFPFIDK----EKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA-  321 (396)
Q Consensus       256 ~~~~v~~----~dG~----~~~~D~VI~aTG~~~~~~~l~~----~~~~~-~~~~~~l~~~~~~~~~p~l~~iG~~~~~-  321 (396)
                      +++++.+    .||+    ++++|.||||+|.+++ |++..    ..... +.+++.+.+.+..+++|+||++||+... 
T Consensus       299 ~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~-~~~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~  377 (502)
T 4g6h_A          299 EEKQLLAKTKHEDGKITEETIPYGTLIWATGNKAR-PVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAG  377 (502)
T ss_dssp             CSSEEEEEEECTTSCEEEEEEECSEEEECCCEECC-HHHHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESS
T ss_pred             eCCceEEEEEecCcccceeeeccCEEEEccCCcCC-HHHHhHHHhccccccCCCceeECCccccCCCCCEEEEEcccCCC
Confidence            8887665    4664    4899999999999987 33221    11222 3466778777777799999999998643 


Q ss_pred             -CchhhHHHHHHHHHHHHHhccccCCC
Q psy2343         322 -AGLGDGLRLQGQFIRSYIQAFIRKSK  347 (396)
Q Consensus       322 -~~~~~~ae~qa~~~a~~l~~~~~lp~  347 (396)
                       ....+.|..||+++|++|.+..+.+.
T Consensus       378 ~p~~a~~A~qqg~~~A~ni~~~~~~~~  404 (502)
T 4g6h_A          378 LPPTAQVAHQEAEYLAKNFDKMAQIPN  404 (502)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHhccch
Confidence             45678899999999999988766554

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.73  E-value=1.7e-18  Score=178.70  Aligned_cols=227  Identities=13%  Similarity=0.083  Sum_probs=145.8

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC------CCCCCCCC--Cc
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV------ARYPNYSG--YF  118 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~------p~~P~~~g--~~  118 (396)
                      ....+.+|++..++.+.     ..+..++.+.. +  ..|+++++..+.||+||||||....      |..|++||  .+
T Consensus       439 ~~~~~~~~~~~~i~~~~-----~~~~~~v~i~~-~--~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~  510 (729)
T 1o94_A          439 EWSYHRDYRETQITKLL-----KKNKESQLALG-Q--KPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADAS  510 (729)
T ss_dssp             GGHHHHHHHHHHHHHHH-----HHSTTCEEECS-C--CCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTT
T ss_pred             HHHHHHHHHHHHHHHhh-----cccCCceEEEe-C--eEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCcccc
Confidence            34567778877776541     01111222211 1  1344445545789999999999422      57788898  34


Q ss_pred             ccceeecccCCCCCCCCCCeEEEEc--CCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccCh
Q psy2343         119 SGEILHSMDYKSPDQIRNKRVLVVG--AGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSK  196 (396)
Q Consensus       119 ~g~~~hs~~~~~~~~~~~k~VvVVG--~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~  196 (396)
                      .+.++++.++.+.....+|+|+|||  +|.+|+|+|..|++.+.+|+++.|++  +.+..           .++..    
T Consensus       511 ~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~--l~~~~-----------~~~~~----  573 (729)
T 1o94_A          511 LPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH--LANYM-----------HFTLE----  573 (729)
T ss_dssp             STTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC--TTHHH-----------HHTTC----
T ss_pred             CCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc--ccccc-----------ccccc----
Confidence            5567787777665566799999999  99999999999999999999999875  11100           00000    


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeCCeEEe----cCC-cE--
Q psy2343         197 EETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNGNIVHF----VDD-TH--  267 (396)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~~v~~----~dG-~~--  267 (396)
                                                           ...+.+.+.+..|++.  ..+++++++++.+    .++ +.  
T Consensus       574 -------------------------------------~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~  616 (729)
T 1o94_A          574 -------------------------------------YPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTY  616 (729)
T ss_dssp             -------------------------------------HHHHHHHHHHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCC
T ss_pred             -------------------------------------HHHHHHHHHhCCCEEEcCcEEEEEECCeEEEEEecCCceEEec
Confidence                                                 0011111222234433  3466666665544    233 22  


Q ss_pred             ----------------ecCcEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHH
Q psy2343         268 ----------------IEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQ  331 (396)
Q Consensus       268 ----------------~~~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~q  331 (396)
                                      +++|.||+|+|++++..+++....       .. ...+.++.|+||++||+.. ...+..|..|
T Consensus       617 ~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~l~~-------~v-d~~~~t~~~~VyAiGD~~~-~~~~~~A~~~  687 (729)
T 1o94_A          617 RGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKA-------RE-SEWAENDIKGIYLIGDAEA-PRLIADATFT  687 (729)
T ss_dssp             CCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHHHHH-------TG-GGTGGGTCCEEEECGGGTS-CCCHHHHHHH
T ss_pred             ccccccccccCCcceeeeCCEEEECCCCCCChHHHHHHhh-------hc-ccccccCCCCeEEEeCccc-hhhHHHHHHH
Confidence                            899999999999999776542111       11 1234578899999999975 3456789999


Q ss_pred             HHHHHHHHhcccc
Q psy2343         332 GQFIRSYIQAFIR  344 (396)
Q Consensus       332 a~~~a~~l~~~~~  344 (396)
                      |+.+|..|.+.+.
T Consensus       688 G~~aA~~i~~~l~  700 (729)
T 1o94_A          688 GHRVAREIEEANP  700 (729)
T ss_dssp             HHHHHHTTTSSCT
T ss_pred             HHHHHHHhhhhcc
Confidence            9999999987643

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.72  E-value=2.7e-18  Score=176.38  Aligned_cols=222  Identities=10%  Similarity=0.001  Sum_probs=156.2

Q ss_pred             CCCChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC------CCCCCCCC
Q psy2343          44 VYPNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV------ARYPNYSG  116 (396)
Q Consensus        44 ~~p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~------p~~P~~~g  116 (396)
                      .+....++.+|+...++++ ++.  ++++++|            +.+++.++.||+||+|||....      |..|.++|
T Consensus       438 ~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v------------~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G  503 (690)
T 3k30_A          438 GLSAWGRVKEYREAVLAELPNVE--IYRESPM------------TGDDIVEFGFEHVITATGATWRTDGVARFHTTALPI  503 (690)
T ss_dssp             TCGGGGHHHHHHHHHHHTCTTEE--EESSCCC------------CHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCB
T ss_pred             chhHHHHHHHHHHHHHHHcCCCE--EEECCee------------cHHHHhhcCCCEEEEcCCCccccccccccCCCCCCC
Confidence            3445678999999999987 765  6666543            2233444689999999999422      56788888


Q ss_pred             CcccceeecccCCCCCCCCCCeEEEEc--CCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCcccc
Q psy2343         117 YFSGEILHSMDYKSPDQIRNKRVLVVG--AGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFS  194 (396)
Q Consensus       117 ~~~g~~~hs~~~~~~~~~~~k~VvVVG--~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~  194 (396)
                      .....++++.++.......+++|+|||  +|.+|+|+|..|++.+.+|+++.+.+... +.                 ..
T Consensus       504 ~~~~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~-~~-----------------~~  565 (690)
T 3k30_A          504 AEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVS-SW-----------------TN  565 (690)
T ss_dssp             CTTSEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTT-GG-----------------GG
T ss_pred             CCCCcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccc-cc-----------------cc
Confidence            434567888777776667899999999  99999999999999999999999876310 00                 00


Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCeEEec-----CCcE
Q psy2343         195 SKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNIVHFV-----DDTH  267 (396)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~v~~~-----dG~~  267 (396)
                      .                                   +.....+.+.+.+..|++  ...|++++++++.+.     ++++
T Consensus       566 ~-----------------------------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~  610 (690)
T 3k30_A          566 N-----------------------------------TFEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERE  610 (690)
T ss_dssp             G-----------------------------------GTCHHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEE
T ss_pred             c-----------------------------------chhHHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEE
Confidence            0                                   000111222222234444  446888888776654     4556


Q ss_pred             ecCcEEEEccCCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcccc
Q psy2343         268 IEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       268 ~~~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~  344 (396)
                      +++|.||+|||++++..+++....  . +    .    .++.|+||++||+... ..+..|..||+.+|..+.+.+.
T Consensus       611 i~aD~VV~A~G~~p~~~l~~~l~~--~-~----~----~t~~~~VyaiGD~~~~-~~~~~A~~~g~~aa~~i~~~l~  675 (690)
T 3k30_A          611 LECDAVVMVTARLPREELYLDLVA--R-R----D----AGEIASVRGIGDAWAP-GTIAAAVWSGRRAAEEFDAVLP  675 (690)
T ss_dssp             EECSEEEEESCEEECCHHHHHHHH--H-H----H----HTSCSEEEECGGGTSC-BCHHHHHHHHHHHHHHTTCCCC
T ss_pred             EECCEEEECCCCCCChHHHHHHhh--h-h----c----ccCCCCEEEEeCCCch-hhHHHHHHHHHHHHHHHHhhcc
Confidence            899999999999998765542111  0 0    0    6789999999999764 4556699999999999988854

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.68  E-value=3.8e-17  Score=173.21  Aligned_cols=227  Identities=13%  Similarity=0.080  Sum_probs=148.3

Q ss_pred             hHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCC---------eEEEEE------ccCcEEEcCEEEEcccCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYED---------IWEVEL------SNGKKKKYDFIAVCNGAQRVARY  111 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~---------~~~V~~------~~g~~~~~d~vvvAtG~~~~p~~  111 (396)
                      ..++.+++...+..+ ++.  ++++++|..|.....         .+.|.+      .++.++.||+||||||+  .|+.
T Consensus       180 ~~~~~~~~~~~l~~~~~v~--~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs--~p~~  255 (965)
T 2gag_A          180 SSAWIEQVTSELAEAEETT--HLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGA--HERP  255 (965)
T ss_dssp             HHHHHHHHHHHHHHSTTEE--EESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCE--EECC
T ss_pred             HHHHHHHHHHHHhhcCCcE--EEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCC--ccCC
Confidence            345556655555554 665  778999988864221         122221      11235889999999999  7888


Q ss_pred             CCCCC-CcccceeecccC---CC-CCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHH
Q psy2343         112 PNYSG-YFSGEILHSMDY---KS-PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWM  186 (396)
Q Consensus       112 P~~~g-~~~g~~~hs~~~---~~-~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~  186 (396)
                      |.+|| ...| ++++...   .. .....+|+|+|||+|.+|+|+|..|++.+.+|+++.+++... +            
T Consensus       256 ~~ipG~~~~g-v~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~-~------------  321 (965)
T 2gag_A          256 IVFENNDRPG-IMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS-A------------  321 (965)
T ss_dssp             CCCBTCCSTT-EEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC-H------------
T ss_pred             CCCCCCCCCC-EEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc-h------------
Confidence            88998 5444 4554322   11 223568999999999999999999999988899999986310 0            


Q ss_pred             HhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEeC--C----eE
Q psy2343         187 LQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG--N----IV  260 (396)
Q Consensus       187 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~--~----~v  260 (396)
                                    . .+. ++       ..|+                         ++.....|.++++  +    +|
T Consensus       322 --------------~-~~~-l~-------~~GV-------------------------~v~~~~~v~~i~~~~~~~v~~v  353 (965)
T 2gag_A          322 --------------A-AAQ-AV-------ADGV-------------------------QVISGSVVVDTEADENGELSAI  353 (965)
T ss_dssp             --------------H-HHH-HH-------HTTC-------------------------CEEETEEEEEEEECTTSCEEEE
T ss_pred             --------------h-HHH-HH-------hCCe-------------------------EEEeCCEeEEEeccCCCCEEEE
Confidence                          0 000 00       0111                         2333334566653  2    57


Q ss_pred             EecC-------C--cEecCcEEEEccCCCCCCCCCCcccccccCCccccccccc----cCCCCcEEEEecccCcCchhhH
Q psy2343         261 HFVD-------D--THIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIA----PRNLDNIFFFGFVNAAAGLGDG  327 (396)
Q Consensus       261 ~~~d-------G--~~~~~D~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~~~----~~~~p~l~~iG~~~~~~~~~~~  327 (396)
                      .+.+       |  +++++|.||+|+|++|+..++...     ++.+.+...+.    .++.|+||++||+.....+ ..
T Consensus       354 ~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~-----~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~l-~~  427 (965)
T 2gag_A          354 VVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR-----QGKLDWDTTIHAFVPADAVANQHLAGAMTGRLDT-AS  427 (965)
T ss_dssp             EEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT-----TCCEEEETTTTEEEECSCCTTEEECGGGGTCCSH-HH
T ss_pred             EEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC-----CCcEEEcCcccccccCCCCCCEEEEEecCCchhH-HH
Confidence            7765       5  568999999999999997765432     12232222221    3789999999999765444 48


Q ss_pred             HHHHHHHHHHHHhccccCC
Q psy2343         328 LRLQGQFIRSYIQAFIRKS  346 (396)
Q Consensus       328 ae~qa~~~a~~l~~~~~lp  346 (396)
                      +..||+.+|..+.+.+...
T Consensus       428 A~~~G~~aA~~i~~~lg~~  446 (965)
T 2gag_A          428 ALSTGAATGAAAATAAGFA  446 (965)
T ss_dssp             HHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHcCCC
Confidence            9999999999998766543

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.68  E-value=7.8e-17  Score=165.09  Aligned_cols=237  Identities=14%  Similarity=0.101  Sum_probs=142.0

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEE-EcCEEEEcccCCCCCCCCCCCCCcccceeecc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKK-KYDFIAVCNGAQRVARYPNYSGYFSGEILHSM  126 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~-~~d~vvvAtG~~~~p~~P~~~g~~~g~~~hs~  126 (396)
                      ..++.+|+...++++++.  ++++++|..               ..+ .||+||||||.  .|+.|.++|.-...++++.
T Consensus       424 ~~~~~~~~~~~~~~~gv~--~~~~~~v~~---------------~~~~~~d~lviAtG~--~p~~~~i~G~~~~~v~~~~  484 (671)
T 1ps9_A          424 FYETLRYYRRMIEVTGVT--LKLNHTVTA---------------DQLQAFDETILASGI--VPRTPPIDGIDHPKVLSYL  484 (671)
T ss_dssp             HHHHHHHHHHHHHHHTCE--EEESCCCCS---------------SSSCCSSEEEECCCE--EECCCCCBTTTSTTEEEHH
T ss_pred             HHHHHHHHHHHHHHcCCE--EEeCcEecH---------------HHhhcCCEEEEccCC--CcCCCCCCCCCCCcEeeHH
Confidence            356777888888888886  778875421               113 79999999999  8999999983224577777


Q ss_pred             cCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc--CceeecCCCCCCChhHHHHhhCccccChHHHHHHHH
Q psy2343         127 DYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR--GYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIK  204 (396)
Q Consensus       127 ~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~--~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  204 (396)
                      ++.......+|+|+|||+|.+|+|+|..|++.+.+|++....  ..|-.........  .+....|....          
T Consensus       485 ~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~----------  552 (671)
T 1ps9_A          485 DVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAG--GLSPQGMQIPR----------  552 (671)
T ss_dssp             HHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGG--GBCTTCCCCCC----------
T ss_pred             HHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccc--cccccccccCC----------
Confidence            666655667999999999999999999999887666542100  0000000000000  00000000000          


Q ss_pred             HHHHHhcCCCCCCCCCCCCCC-CCc-ccCccCchhhhcccCCCeEec--CCcceEeCCeEEe-cCC--cEecCcEEEEcc
Q psy2343         205 QVFKLAGFDGVDYGLKKPDHP-LDA-AHPIMNSQILYHIGHGDILPK--DDIKNLNGNIVHF-VDD--THIEVDTIIYAT  277 (396)
Q Consensus       205 ~~~~~~~~~~~~~~~~~p~~~-~~~-~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~~~v~~-~dG--~~~~~D~VI~aT  277 (396)
                              .....-+..+... +.. ..+.....+.+.+....|++.  ..+++++++++.+ .||  +++++|.||+||
T Consensus       553 --------~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~  624 (671)
T 1ps9_A          553 --------SPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICA  624 (671)
T ss_dssp             --------CSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECC
T ss_pred             --------CCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECC
Confidence                    0000000000000 000 001111122344444556654  4577888888888 688  469999999999


Q ss_pred             CCCCCCCCCCcccccccCCccccccccccCCCCcEEEEecccCcCc-hhhHHHHHHHHHHHHH
Q psy2343         278 GYNRHFPFIDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG-LGDGLRLQGQFIRSYI  339 (396)
Q Consensus       278 G~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~-~~~~ae~qa~~~a~~l  339 (396)
                      |++++..+++.  +.              ...+++|++||+..... ....|..||+.+|..|
T Consensus       625 G~~p~~~l~~~--l~--------------~~g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          625 GQEPNRALAQP--LI--------------DSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI  671 (671)
T ss_dssp             CEEECCTTHHH--HH--------------TTTCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred             CccccHHHHHH--HH--------------hcCCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence            99998766542  11              12368999999975432 4678999999998764

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.66  E-value=5.9e-16  Score=148.99  Aligned_cols=222  Identities=13%  Similarity=0.100  Sum_probs=138.5

Q ss_pred             cCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccc-cceeecccCCCC-------
Q psy2343          62 FDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFS-GEILHSMDYKSP-------  131 (396)
Q Consensus        62 ~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~-g~~~hs~~~~~~-------  131 (396)
                      .+++  + ...+|+.|+++.+  +|++.+|.++.||+||||||+  .++.|.++|  ... ....|+....+.       
T Consensus        68 ~gv~--~-i~~~v~~id~~~~--~v~~~~g~~i~yd~LviAtG~--~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~  140 (401)
T 3vrd_B           68 HGIQ--V-VHDSALGIDPDKK--LVKTAGGAEFAYDRCVVAPGI--DLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQ  140 (401)
T ss_dssp             TTCE--E-ECSCEEEEETTTT--EEEETTSCEEECSEEEECCCE--EECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHH
T ss_pred             CCCE--E-EEeEEEEEEccCc--EEEecccceeecceeeeccCC--ccccCCccCchhhcccCccceeccHHHHHHHHHH
Confidence            4553  3 4668999987654  677888988999999999999  888888888  222 122333211110       


Q ss_pred             -CCCCCCeEEEEcCCCc-------HHHHHHHHh----cC--CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChH
Q psy2343         132 -DQIRNKRVLVVGAGNS-------GCDIAVDAS----HH--SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKE  197 (396)
Q Consensus       132 -~~~~~k~VvVVG~G~s-------a~d~a~~l~----~~--~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~  197 (396)
                       ..+.....+|+|+|..       +.|++.+++    +.  ..+|+++.+.+.....      +                
T Consensus       141 l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~------~----------------  198 (401)
T 3vrd_B          141 LESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQ------A----------------  198 (401)
T ss_dssp             HHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTH------H----------------
T ss_pred             HHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEccccccccc------c----------------
Confidence             1223344455544433       334444443    32  4678888876521100      0                


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEe----CCeEEecCCcEecCc
Q psy2343         198 ETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLN----GNIVHFVDDTHIEVD  271 (396)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~----~~~v~~~dG~~~~~D  271 (396)
                         .+.+.+.+...                           ..++...|++  ...+..++    ...|.+.||+++++|
T Consensus       199 ---~~~~~~~~~~~---------------------------~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D  248 (401)
T 3vrd_B          199 ---QFTKGWERLYG---------------------------FGTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAA  248 (401)
T ss_dssp             ---HHHHHHHHHSC---------------------------TTSTTCSEEEECTTTTCEEEEETTTTEEEETTSCEEECS
T ss_pred             ---cccHHHHHHHH---------------------------HHHHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEee
Confidence               11121111111                           1122223443  33455553    246889999999999


Q ss_pred             EEEEccCCCCCCCCCCcccccccCCccccccc-cccCCCCcEEEEecccCc---CchhhHHHHHHHHHHHHHhccc
Q psy2343         272 TIIYATGYNRHFPFIDKEKLEWKLGIPDLFIH-IAPRNLDNIFFFGFVNAA---AGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       272 ~VI~aTG~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~~p~l~~iG~~~~~---~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      .|++++|.+++ +++....+..+.+++.+.++ +.++++||||++||+...   ..+...|..||+.+|++|...+
T Consensus       249 ~vi~~~g~~~~-~~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~~~l  323 (401)
T 3vrd_B          249 VINLIPPQRAG-KIAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVVALL  323 (401)
T ss_dssp             EEEECCCEEEC-HHHHHTTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCcCCc-hhHhhccccccCCCEEECCCcceecCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            99999999876 56665566556677888877 457899999999998643   2456788999999999887554

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.66  E-value=6.4e-17  Score=172.54  Aligned_cols=243  Identities=17%  Similarity=0.159  Sum_probs=141.0

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCC-CC-Ccccceeec
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNY-SG-YFSGEILHS  125 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~-~g-~~~g~~~hs  125 (396)
                      ..++.++..++++++++.  +++++.|..       ..|+++++.++.||+||||||+. .|+.+++ +| .....++++
T Consensus       237 ~~~~~~~~~~~~~~~gv~--~~~~~~v~~-------~~v~~~~~~~~~~d~vvlAtGa~-~p~~l~~~~G~~~~~gv~~a  306 (1025)
T 1gte_A          237 PYDVVNFEIELMKDLGVK--IICGKSLSE-------NEITLNTLKEEGYKAAFIGIGLP-EPKTDDIFQGLTQDQGFYTS  306 (1025)
T ss_dssp             CHHHHHHHHHHHHTTTCE--EEESCCBST-------TSBCHHHHHHTTCCEEEECCCCC-EECCCGGGTTCCTTTTEEEH
T ss_pred             CHHHHHHHHHHHHHCCcE--EEcccEecc-------ceEEhhhcCccCCCEEEEecCCC-CCCCCCCCCCCCCCCCEEEh
Confidence            356778888888888887  778876521       13444444446799999999983 3665543 34 211224443


Q ss_pred             ccCC--------------C-CCCCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCceeecCCCCCCChhHHHHhh
Q psy2343         126 MDYK--------------S-PDQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGYHYYPKFIDGKPTPQWMLQL  189 (396)
Q Consensus       126 ~~~~--------------~-~~~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~  189 (396)
                      .++.              + .....+++|+|||||.+|+|+|..+++.+ ++|+++.|++...+|..    +        
T Consensus       307 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~----~--------  374 (1025)
T 1gte_A          307 KDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAV----P--------  374 (1025)
T ss_dssp             HHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSC----H--------
T ss_pred             HHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCC----H--------
Confidence            3221              1 11234679999999999999999999986 58999999864333321    0        


Q ss_pred             CccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcc-cCCCeE-ecCCcceEeCCe--EEecCC
Q psy2343         190 GNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHI-GHGDIL-PKDDIKNLNGNI--VHFVDD  265 (396)
Q Consensus       190 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i-~~g~i~-~~~~i~~i~~~~--v~~~dG  265 (396)
                                 ..... ++.       .|+.          ...+....+.. ..|+++ +.-.-.+.++++  +.. +|
T Consensus       375 -----------~e~~~-~~~-------~Gv~----------~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~-~g  424 (1025)
T 1gte_A          375 -----------EEVEL-AKE-------EKCE----------FLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNED-ED  424 (1025)
T ss_dssp             -----------HHHHH-HHH-------TTCE----------EECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEE-EE
T ss_pred             -----------HHHHH-HHH-------cCCE----------EEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccC-CC
Confidence                       00000 000       0100          00000000000 011111 000000001111  111 23


Q ss_pred             --cEecCcEEEEccCCCCC-CCCCCc-cccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHh
Q psy2343         266 --THIEVDTIIYATGYNRH-FPFIDK-EKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQ  340 (396)
Q Consensus       266 --~~~~~D~VI~aTG~~~~-~~~l~~-~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~  340 (396)
                        ..+++|.||+|+|++++ ..++.. ..+..+ .+.+.+....+.|+.|+||++||+.........|..||+.+|..+.
T Consensus       425 ~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~i~  504 (1025)
T 1gte_A          425 QIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIH  504 (1025)
T ss_dssp             EEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCCHHHHHHHHHHHHHHHH
T ss_pred             ceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence              25899999999999864 334433 234444 3556666545678999999999998766677889999999999887


Q ss_pred             cc
Q psy2343         341 AF  342 (396)
Q Consensus       341 ~~  342 (396)
                      +.
T Consensus       505 ~~  506 (1025)
T 1gte_A          505 KY  506 (1025)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.59  E-value=2e-15  Score=149.17  Aligned_cols=188  Identities=14%  Similarity=0.130  Sum_probs=129.7

Q ss_pred             eEeCcEEEEEEEeCCeEEEEE-ccCc--EEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCC----CCCCCCCeE
Q psy2343          68 SIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKS----PDQIRNKRV  139 (396)
Q Consensus        68 i~~~t~V~~v~~~~~~~~V~~-~~g~--~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~----~~~~~~k~V  139 (396)
                      ++++++|.+|.++++.|.+.. ++++  .+.||+||+|||+  .|..|.++| ...| +++..++..    .....+++|
T Consensus       177 ~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa--~~~~~~~~g~~~~g-v~~~~~~~~~~~~~~~~~~~~v  253 (493)
T 1y56_A          177 IYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGA--IDSTMLFENNDMPG-VFRRDFALEVMNVWEVAPGRKV  253 (493)
T ss_dssp             EETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCE--EECCCCCTTTTSTT-EEEHHHHHHHHHTSCBCSCSEE
T ss_pred             EEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCC--CccCCCCCCCCCCC-EEEcHHHHHHHHhcccCCCCEE
Confidence            678999999988777776655 3443  5889999999999  788888998 5544 444332211    123467999


Q ss_pred             EEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCC
Q psy2343         140 LVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGL  219 (396)
Q Consensus       140 vVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (396)
                      +|||+|.+|+|  ..+.+.+  |.+.                                                      
T Consensus       254 vViGgG~~gle--~~l~~~G--V~v~------------------------------------------------------  275 (493)
T 1y56_A          254 AVTGSKADEVI--QELERWG--IDYV------------------------------------------------------  275 (493)
T ss_dssp             EEESTTHHHHH--HHHHHHT--CEEE------------------------------------------------------
T ss_pred             EEECCCHHHHH--HHHHhCC--cEEE------------------------------------------------------
Confidence            99999999998  2222222  1111                                                      


Q ss_pred             CCCCCCCCcccCccCchhhhcccCCCeEecCCcceEeC----CeEEecCCcEecCcEEEEccCCCCCCCCCCcccccc--
Q psy2343         220 KKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNG----NIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEW--  293 (396)
Q Consensus       220 ~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~----~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~~~~~--  293 (396)
                                                  ....|.++++    ..|.+.||+++++|.||+|+|++|+..++....++.  
T Consensus       276 ----------------------------~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~  327 (493)
T 1y56_A          276 ----------------------------HIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRF  327 (493)
T ss_dssp             ----------------------------ECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEE
T ss_pred             ----------------------------eCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccc
Confidence                                        1122333332    236678899999999999999999987776554432  


Q ss_pred             c-CCccc-cccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccccCCC
Q psy2343         294 K-LGIPD-LFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSK  347 (396)
Q Consensus       294 ~-~~~~~-l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~lp~  347 (396)
                      + .+.+. +.+.+ . +.|+||++||+... ..+..+..||+.+|..+.+.+....
T Consensus       328 ~~~g~i~~vd~~~-~-s~~~vya~GD~~~~-~~~~~A~~~g~~aa~~i~~~lg~~~  380 (493)
T 1y56_A          328 RRGYYSPVLDEYH-R-IKDGIYVAGSAVSI-KPHYANYLEGKLVGAYILKEFGYDA  380 (493)
T ss_dssp             ETTEEEECCCTTS-E-EETTEEECSTTTCC-CCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             cCCceeecccccc-C-cCCCEEEEeccCCc-cCHHHHHHHHHHHHHHHHHHcCCCc
Confidence            2 33344 34433 4 78999999999754 4567889999999999988765543

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.57  E-value=2.8e-16  Score=152.61  Aligned_cols=229  Identities=16%  Similarity=0.164  Sum_probs=132.3

Q ss_pred             HHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-CcccceeecccCCCC-
Q psy2343          54 YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMDYKSP-  131 (396)
Q Consensus        54 Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~~~~~-  131 (396)
                      .++.++++.+++  + ...+|++|+++.+  +|++++|+++.||+||||||+  .+. +++|| .-.  ....+...+. 
T Consensus        61 ~~~~~~~~~gv~--~-i~~~v~~Id~~~~--~V~~~~g~~i~YD~LViAtG~--~~~-~~i~G~~e~--~~~~~~~~~a~  130 (430)
T 3hyw_A           61 PLAPLLPKFNIE--F-INEKAESIDPDAN--TVTTQSGKKIEYDYLVIATGP--KLV-FGAEGQEEN--STSICTAEHAL  130 (430)
T ss_dssp             ESTTTGGGGTEE--E-ECSCEEEEETTTT--EEEETTCCEEECSEEEECCCC--EEE-CCSBTHHHH--SCCCSSHHHHH
T ss_pred             cHHHHHHHCCcE--E-EEeEEEEEECCCC--EEEECCCCEEECCEEEEeCCC--Ccc-CCccCcccC--cCCcccHHHHH
Confidence            344445555643  3 3568999987655  688899988999999999998  444 45777 210  0111111110 


Q ss_pred             ------CC-CCCCeEEEEcCCCcHH-------HHHHHHh----cC----CCcEEEEeccCceeecCCCCCCChhHHHHhh
Q psy2343         132 ------DQ-IRNKRVLVVGAGNSGC-------DIAVDAS----HH----SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQL  189 (396)
Q Consensus       132 ------~~-~~~k~VvVVG~G~sa~-------d~a~~l~----~~----~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~  189 (396)
                            .+ ..++.++|+|++ .|+       |+|..+.    +.    ..+|+++...+.  ++.....          
T Consensus       131 ~~~~~l~~~~~~~~~vv~gg~-~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~--l~~~~~~----------  197 (430)
T 3hyw_A          131 ETQKKLQELYANPGPVVIGAI-PGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPY--LGHFGVG----------  197 (430)
T ss_dssp             HHHHHHHHHHHSCCCEEEEEC-TTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSS--TTCTTTT----------
T ss_pred             HHHHHHHhhccCCceEEEeCC-CcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccch--hhhccch----------
Confidence                  01 134556666655 333       3333332    22    125666665431  1100000          


Q ss_pred             CccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCeEEecC--C
Q psy2343         190 GNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNIVHFVD--D  265 (396)
Q Consensus       190 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~v~~~d--G  265 (396)
                         ...     ..                               ...+.+.+++..|++  ...|++++++.+.+++  |
T Consensus       198 ---~~~-----~~-------------------------------~~~l~~~l~~~GV~~~~~~~v~~v~~~~~~~~~~~g  238 (430)
T 3hyw_A          198 ---GIG-----AS-------------------------------KRLVEDLFAERNIDWIANVAVKAIEPDKVIYEDLNG  238 (430)
T ss_dssp             ---CST-----TH-------------------------------HHHHHHHHHHTTCEEECSCEEEEECSSEEEEECTTS
T ss_pred             ---hhH-----HH-------------------------------HHHHHHHHHhCCeEEEeCceEEEEeCCceEEEeeCC
Confidence               000     00                               011112222224444  4568899988888865  3


Q ss_pred             --cEecCcEEEEccCCCCCCCCCCccc--ccccC-CccccccccccCCCCcEEEEecccCc------------CchhhHH
Q psy2343         266 --THIEVDTIIYATGYNRHFPFIDKEK--LEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAA------------AGLGDGL  328 (396)
Q Consensus       266 --~~~~~D~VI~aTG~~~~~~~l~~~~--~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~------------~~~~~~a  328 (396)
                        .++++|.||+|+|.+++ +++....  +..+. +.+.+.+.+..+++||||++||+...            ..+.+.|
T Consensus       239 ~~~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A  317 (430)
T 3hyw_A          239 NTHEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMI  317 (430)
T ss_dssp             CEEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHH
T ss_pred             CceEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHH
Confidence              35899999999999986 4443332  22233 34556666667999999999999742            1245579


Q ss_pred             HHHHHHHHHHHhccccC
Q psy2343         329 RLQGQFIRSYIQAFIRK  345 (396)
Q Consensus       329 e~qa~~~a~~l~~~~~l  345 (396)
                      ..||+.+|++|...++.
T Consensus       318 ~~qg~~~A~Ni~~~l~g  334 (430)
T 3hyw_A          318 EQMAMAVAHNIVNDIRN  334 (430)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999876653

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.46  E-value=7.4e-14  Score=118.84  Aligned_cols=160  Identities=15%  Similarity=0.090  Sum_probs=100.9

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCC--CCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKF--IDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGV  215 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  215 (396)
                      +|+|||+|.+|+++|..|++.+.+|+++.+.+... ++.  ....|      .+|..+.. .   .+             
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~-~~~~~~~~~~------~~~~~~~~-~---~~-------------   58 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKV-KGVSRVPNYP------GLLDEPSG-E---EL-------------   58 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTT-TTCSCCCCST------TCTTCCCH-H---HH-------------
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcc-cCchhhhccC------CCcCCCCH-H---HH-------------
Confidence            79999999999999999999999999999876321 110  00000      00000000 0   11             


Q ss_pred             CCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeC--C--eEEecCCcEecCcEEEEccCCCCCCCCCCcc
Q psy2343         216 DYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNG--N--IVHFVDDTHIEVDTIIYATGYNRHFPFIDKE  289 (396)
Q Consensus       216 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~--~--~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~  289 (396)
                                        ...+.+.+.+..++  .. .+++++.  +  .|.+.+| ++++|.||+|||.+++.  +...
T Consensus        59 ------------------~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~--~~~~  116 (180)
T 2ywl_A           59 ------------------LRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTL--PSLL  116 (180)
T ss_dssp             ------------------HHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHH--HHHH
T ss_pred             ------------------HHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCc--cccC
Confidence                              11111112111233  33 5666653  2  3667788 89999999999999742  2222


Q ss_pred             cccccCCccccccccccCCCCcEEEEecccCcCc-hhhHHHHHHHHHHHHHhcccc
Q psy2343         290 KLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAG-LGDGLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       290 ~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~-~~~~ae~qa~~~a~~l~~~~~  344 (396)
                      .++.+.+.+.+.. .+.++.|+||++||+..... .+..|..||+.+|..+.+.++
T Consensus       117 g~~~~~g~i~vd~-~~~t~~~~i~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~  171 (180)
T 2ywl_A          117 GLTRRGAYIDTDE-GGRTSYPRVYAAGVARGKVPGHAIISAGDGAYVAVHLVSDLR  171 (180)
T ss_dssp             TCCEETTEECCCT-TCBCSSTTEEECGGGGTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccCceEEeCC-CCCcCCCCEEEeecccCcchhhHHHHHHhHHHHHHHHHHHhh
Confidence            3344434444444 45778999999999987644 778899999999999987654

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.07  E-value=2.3e-10  Score=101.32  Aligned_cols=175  Identities=15%  Similarity=0.142  Sum_probs=97.4

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCcee-ecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHY-YPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGV  215 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~-~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  215 (396)
                      .+|+|||+|.+|+++|..|++.+.+|+++.+..... ++..    |      .++.....     .+.+.    .. +  
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~----~------~~~~~~~~-----~~~~~----~~-d--   61 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFL----P------PKPPFPPG-----SLLER----AY-D--   61 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSS----C------CCSCCCTT-----CHHHH----HC-C--
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccC----c------cccccchh-----hHHhh----hc-c--
Confidence            479999999999999999999999999999863110 0000    0      00000000     00000    00 0  


Q ss_pred             CCCCCCCCCCCCcccCccCchhhhcccC-CCeEe-cCCcceEe--CC---eEEecCCcEecCcEEEEccCCCCCCCCC--
Q psy2343         216 DYGLKKPDHPLDAAHPIMNSQILYHIGH-GDILP-KDDIKNLN--GN---IVHFVDDTHIEVDTIIYATGYNRHFPFI--  286 (396)
Q Consensus       216 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~-g~i~~-~~~i~~i~--~~---~v~~~dG~~~~~D~VI~aTG~~~~~~~l--  286 (396)
                      ..+   |      .+..+...+.+.+.+ +.+++ ...++++.  ++   .|.+.+|+++.+|.||+|||.......+  
T Consensus        62 ~~g---~------~~~~~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G  132 (232)
T 2cul_A           62 PKD---E------RVWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLG  132 (232)
T ss_dssp             TTC---C------CHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEET
T ss_pred             CCC---C------CHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecC
Confidence            000   0      011122223333333 24554 34566664  22   4677889889999999999995432100  


Q ss_pred             -----------------Cc----cccccc---------CCccc-------cc------cccccCCCCcEEEEecccCcCc
Q psy2343         287 -----------------DK----EKLEWK---------LGIPD-------LF------IHIAPRNLDNIFFFGFVNAAAG  323 (396)
Q Consensus       287 -----------------~~----~~~~~~---------~~~~~-------l~------~~~~~~~~p~l~~iG~~~~~~~  323 (396)
                                       .+    ..+...         .+.++       +.      ..+..+++|+||++||+. ...
T Consensus       133 ~~~~~~g~~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g  211 (232)
T 2cul_A          133 GVVEEAGRLSEASYPDLLEDLSRLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REG  211 (232)
T ss_dssp             TEEESEEETTEECCSHHHHHHHHTTCCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCC
T ss_pred             CccCCCCCCcccchhhhCHHHHhCCCeEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCc
Confidence                             00    000000         00000       00      011225899999999999 666


Q ss_pred             hhhHHHHHHHHHHHHHhccc
Q psy2343         324 LGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       324 ~~~~ae~qa~~~a~~l~~~~  343 (396)
                      ++..+..|++.+|..|...+
T Consensus       212 ~~~~~~~~g~~~a~~i~~~l  231 (232)
T 2cul_A          212 DYARMSEEGKRLAEHLLHEL  231 (232)
T ss_dssp             CHHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHhhc
Confidence            88889999999999987654

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.45  E-value=1.9e-07  Score=89.41  Aligned_cols=61  Identities=13%  Similarity=0.268  Sum_probs=53.2

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe----CCeEEEEEccCcEEEcCEEEEcccCCCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY----EDIWEVELSNGKKKKYDFIAVCNGAQRVAR  110 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~----~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~  110 (396)
                      +..++.++|...+++.++.  ++++++|+++..+    ++.|.|++.++ ++.+|+||+|||..+.|.
T Consensus       107 ~~~~l~~~L~~~~~~~Gv~--i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s~p~  171 (401)
T 2gqf_A          107 GAEQIVEMLKSECDKYGAK--ILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGGLSMPG  171 (401)
T ss_dssp             CTHHHHHHHHHHHHHHTCE--EECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCCSSCGG
T ss_pred             CHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEECCCCccCCC
Confidence            6789999999999999987  9999999999976    56799988777 689999999999976553

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.14  E-value=1.9e-06  Score=83.23  Aligned_cols=105  Identities=24%  Similarity=0.271  Sum_probs=67.1

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG  214 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  214 (396)
                      |+|||||+|..|+.+|..|.+..  .+|+++.+++.+...      |                   .+..    ...+..
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~------p-------------------~l~~----v~~g~~   53 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFT------P-------------------AFPH----LAMGWR   53 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECG------G-------------------GHHH----HHHTCS
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccC------c-------------------cHHH----HhcCCC
Confidence            78999999999999999998754  579999998754321      1                   0000    000100


Q ss_pred             CCCCCCCCCCCCCcccCccCchhhhcccCCCeEe-cCCcceEe--CCeEEecCCcEecCcEEEEccCCCCCCC
Q psy2343         215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-KDDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFP  284 (396)
Q Consensus       215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~-~~~i~~i~--~~~v~~~dG~~~~~D~VI~aTG~~~~~~  284 (396)
                            .+..        +...+.+.+...+|++ ...+++|+  .+.|++.||+++++|.+|+|||.++.++
T Consensus        54 ------~~~~--------i~~~~~~~~~~~gv~~i~~~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~~~  112 (430)
T 3hyw_A           54 ------KFED--------ISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLVFG  112 (430)
T ss_dssp             ------CGGG--------SEEESTTTGGGGTEEEECSCEEEEETTTTEEEETTCCEEECSEEEECCCCEEECC
T ss_pred             ------CHHH--------hhhcHHHHHHHCCcEEEEeEEEEEECCCCEEEECCCCEEECCEEEEeCCCCccCC
Confidence                  0000        0011112223335664 45678886  4679999999999999999999875543

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.13  E-value=3.7e-07  Score=89.32  Aligned_cols=119  Identities=8%  Similarity=0.045  Sum_probs=70.0

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE-EEEE--ccCcEEEcCEEEEcccCCCCCCCCCCCC---Cccc
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVEL--SNGKKKKYDFIAVCNGAQRVARYPNYSG---YFSG  120 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~-~V~~--~~g~~~~~d~vvvAtG~~~~p~~P~~~g---~~~g  120 (396)
                      ++.++.+.|.+.+++.++.  ++++++| ++..+++.. -|..  .++ ++.+|+||+|||.+  +..+.+..   ...|
T Consensus       117 ~g~~l~~~L~~~~~~~gv~--i~~~~~v-~l~~~~~~v~Gv~v~~~~g-~~~a~~VVlAtGg~--~~~~~~~~~~~~~tG  190 (472)
T 2e5v_A          117 TGREIFNFLLKLAREEGIP--IIEDRLV-EIRVKDGKVTGFVTEKRGL-VEDVDKLVLATGGY--SYLYEYSSTQSTNIG  190 (472)
T ss_dssp             HHHHHHHHHHHHHHHTTCC--EECCCEE-EEEEETTEEEEEEETTTEE-ECCCSEEEECCCCC--GGGSSSBSSCTTCSC
T ss_pred             CHHHHHHHHHHHHHhCCCE--EEECcEE-EEEEeCCEEEEEEEEeCCC-eEEeeeEEECCCCC--cccCccccCCCCCch
Confidence            3568888888888888887  9999999 998766543 2333  234 36799999999994  33333321   2233


Q ss_pred             ceeecc-----cCCCCCCCCCC-eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecC
Q psy2343         121 EILHSM-----DYKSPDQIRNK-RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPK  175 (396)
Q Consensus       121 ~~~hs~-----~~~~~~~~~~k-~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~  175 (396)
                      .-+...     ...+.+.+... .++++|+|  +++++..+...+..+ +..+.. .++++
T Consensus       191 dgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~-rf~~~  247 (472)
T 2e5v_A          191 DGMAIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQI-INENGE-RFLFN  247 (472)
T ss_dssp             HHHHHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTHHHHTTCEE-EETTCC-CGGGG
T ss_pred             HHHHHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehhhcCCceEE-ECCCCC-CCCcc
Confidence            221111     12222222222 34566776  888887777766655 444433 34444

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.97  E-value=1.4e-05  Score=72.58  Aligned_cols=33  Identities=30%  Similarity=0.375  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+.+|..|++. +.+|+++.+.+
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~   73 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   73 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4799999999999999999997 88999999875

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.93  E-value=1.6e-05  Score=75.89  Aligned_cols=108  Identities=17%  Similarity=0.132  Sum_probs=66.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGF  212 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  212 (396)
                      +||||+|||+|..|+-+|..|.+..  .+|+++.+++.+.....    . .                 .+    .   .+
T Consensus         1 aGKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~----~-~-----------------~v----~---~g   51 (401)
T 3vrd_B            1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYM----S-N-----------------EV----I---GG   51 (401)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTT----H-H-----------------HH----H---HT
T ss_pred             CcCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccC----H-H-----------------HH----h---cC
Confidence            4899999999999999999998754  47999998775432110    0 0                 00    0   00


Q ss_pred             CCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe-cCCcceEeC--CeEEecCCcEecCcEEEEccCCCCCCCCC
Q psy2343         213 DGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-KDDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRHFPFI  286 (396)
Q Consensus       213 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~-~~~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~~~~l  286 (396)
                      ..      .+.      ..  ...+..... ..|++ ...++.|+.  +.|.+.+|.++.+|.+|+|||.++..+-+
T Consensus        52 ~~------~~~------~~--~~~~~~~~~-~gv~~i~~~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i  113 (401)
T 3vrd_B           52 DR------ELA------SL--RVGYDGLRA-HGIQVVHDSALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKI  113 (401)
T ss_dssp             SS------CGG------GG--EECSHHHHH-TTCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCEEECGGGS
T ss_pred             CC------CHH------HH--hhCHHHHHH-CCCEEEEeEEEEEEccCcEEEecccceeecceeeeccCCccccCCc
Confidence            00      000      00  000111111 23553 456777864  56889999999999999999998765433

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.90  E-value=9e-06  Score=78.62  Aligned_cols=108  Identities=18%  Similarity=0.329  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHhc---CCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASH---HSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFD  213 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~---~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  213 (396)
                      ++|+|||||..|+.+|..|++   .+.+|+++.+++.+...      |.-..   +......                  
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~------~~~~~---~~~g~~~------------------   57 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFV------PSNPW---VGVGWKE------------------   57 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECG------GGHHH---HHHTSSC------------------
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCccc------CCccc---cccCccC------------------
Confidence            689999999999999999998   67899999998743221      10000   0000000                  


Q ss_pred             CCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe-cCCcceEeC--CeEEecCCcEecCcEEEEccCCCCCCCCCC
Q psy2343         214 GVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-KDDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRHFPFID  287 (396)
Q Consensus       214 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~-~~~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~  287 (396)
                                      ...+...+.+.+....|++ ...++.++.  +.|.+.+|+++.+|.||+|||.++..+-++
T Consensus        58 ----------------~~~~~~~l~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ip  118 (437)
T 3sx6_A           58 ----------------RDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVP  118 (437)
T ss_dssp             ----------------HHHHEEECHHHHHTTTCEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCCEECGGGST
T ss_pred             ----------------HHHHHHHHHHHHHHCCCEEEEeEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcCcccCC
Confidence                            0000011112222223443 346677764  478899999999999999999988755443

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.86  E-value=2.8e-05  Score=74.40  Aligned_cols=35  Identities=17%  Similarity=0.217  Sum_probs=31.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHhc---CCCcEEEEeccCce
Q psy2343         137 KRVLVVGAGNSGCDIAVDASH---HSEKVYHSTRRGYH  171 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~---~~~~V~l~~r~~~~  171 (396)
                      ++|+|||||.+|+.+|..|++   .+.+|+++.+++.+
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~   39 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS   39 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCc
Confidence            589999999999999999999   77899999998743

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.84  E-value=2.5e-05  Score=70.83  Aligned_cols=33  Identities=12%  Similarity=0.249  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+.+|..|++.+.+|+++.+.+
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   35 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGE   35 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            479999999999999999999999999999754

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.75  E-value=2.6e-05  Score=71.55  Aligned_cols=32  Identities=19%  Similarity=0.178  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ++|+|||+|.+|+-+|..|++.+.+|+++.+.
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   47 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGET   47 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            58999999999999999999999999999986

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.74  E-value=0.00011  Score=69.61  Aligned_cols=109  Identities=16%  Similarity=0.247  Sum_probs=66.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGV  215 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  215 (396)
                      .-+|+|||+|..|+.+|..|.....+|+++.+.+.....     .|                   .+.. .+   .+...
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~-----~~-------------------~l~~-~l---~g~~~   60 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYY-----RP-------------------RLNE-II---AKNKS   60 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBC-----GG-------------------GHHH-HH---HSCCC
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcc-----cC-------------------hhhH-HH---cCCCC
Confidence            347999999999999999997778899999987642100     00                   0111 00   00000


Q ss_pred             CCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEe--CCeEEecCCcEecCcEEEEccCCCCCCCCC
Q psy2343         216 DYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFPFI  286 (396)
Q Consensus       216 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~--~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l  286 (396)
                      ...+           .....++.   .+-+|++  ...|++++  ...|.+.+|+++.+|.+|+|||.++..|-+
T Consensus        61 ~~~l-----------~~~~~~~~---~~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i  121 (385)
T 3klj_A           61 IDDI-----------LIKKNDWY---EKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKV  121 (385)
T ss_dssp             GGGT-----------BSSCHHHH---HHTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCC
T ss_pred             HHHc-----------cCCCHHHH---HHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCCCCC
Confidence            0000           00011111   1224554  34677776  457999999999999999999998765543

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.70  E-value=8.9e-05  Score=68.27  Aligned_cols=33  Identities=15%  Similarity=0.111  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++|+|||+|.+|+.+|..|++.+.+|+++.+++
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   40 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLP   40 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            589999999999999999999989999999875

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.69  E-value=7.3e-05  Score=69.13  Aligned_cols=33  Identities=21%  Similarity=0.179  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   38 (335)
T 2zbw_A            6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLP   38 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            579999999999999999999889999999875

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.68  E-value=8.4e-05  Score=70.94  Aligned_cols=34  Identities=26%  Similarity=0.437  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCC--cEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~--~V~l~~r~~  169 (396)
                      +|+|+|||+|..|+-+|..|++.+.  +|+++.+.+
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~   36 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEK   36 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSS
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence            4789999999999999999999876  899999876

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.60  E-value=0.00011  Score=70.32  Aligned_cols=106  Identities=19%  Similarity=0.242  Sum_probs=64.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCc--EEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEK--VYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG  214 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~--V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  214 (396)
                      ++|+|||+|..|+-+|..|.+.+.+  |+++.+.+.....     .|                   .+...++.. ....
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~-----~~-------------------~l~~~~~~g-~~~~   57 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYD-----RP-------------------SLSKAVLDG-SLER   57 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBC-----SG-------------------GGGTHHHHT-SSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcC-----Cc-------------------cccHHHhCC-CCCH
Confidence            5899999999999999999998766  9999987642110     00                   000000000 0000


Q ss_pred             CCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--CeEEecCCcEecCcEEEEccCCCCCCC
Q psy2343         215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRHFP  284 (396)
Q Consensus       215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~~~  284 (396)
                      ... +             ....+.   ..-.|++  ...+..++.  ..|.+.+|+.+.+|.+|+|||.++..+
T Consensus        58 ~~~-~-------------~~~~~~---~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~  114 (410)
T 3ef6_A           58 PPI-L-------------AEADWY---GEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTM  114 (410)
T ss_dssp             CCB-S-------------SCTTHH---HHTTCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCC
T ss_pred             HHh-c-------------CCHHHH---HHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCcccCC
Confidence            000 0             001111   1123443  346777764  478889999999999999999886654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.52  E-value=8.8e-05  Score=68.96  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+.+|..|++.+.+|+++.+++
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~   36 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEA   36 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            479999999999999999999999999999875

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.51  E-value=0.00099  Score=66.13  Aligned_cols=33  Identities=24%  Similarity=0.156  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus        22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~   54 (549)
T 4ap3_A           22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAAS   54 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            479999999999999999999888999999865

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.48  E-value=0.00021  Score=68.83  Aligned_cols=110  Identities=16%  Similarity=0.213  Sum_probs=65.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCC--cEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFD  213 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~--~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  213 (396)
                      .++|+|||+|..|+.+|..|++.+.  +|+++.+.+..  |..   .+.      ++..+..                +.
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~--~~~---~~~------l~~~~~~----------------~~   56 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVI--PHH---LPP------LSKAYLA----------------GK   56 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSC--CBC---SGG------GGTTTTT----------------TC
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCC--CCc---CCC------CcHHHhC----------------CC
Confidence            3689999999999999999999876  79999987531  100   000      0000000                00


Q ss_pred             CCCCCCCCCCCCCCcccCccCchhhhcccCCCeEec--CCcceEeC--CeEEecCCcEecCcEEEEccCCCCCCCCC
Q psy2343         214 GVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPK--DDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRHFPFI  286 (396)
Q Consensus       214 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~~~~l  286 (396)
                            ..+      ..  +.....+.+...+|++.  ..|..++.  ..|.+.+|+.+.+|.||+|||.++..+-+
T Consensus        57 ------~~~------~~--~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i  119 (431)
T 1q1r_A           57 ------ATA------ES--LYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPV  119 (431)
T ss_dssp             ------SCS------GG--GBSSCHHHHHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGG
T ss_pred             ------CCh------HH--hcccCHHHHHhCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCccCCCC
Confidence                  000      00  00000112222345543  35677763  57888899999999999999998776544

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.46  E-value=0.00042  Score=64.79  Aligned_cols=34  Identities=12%  Similarity=0.144  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   47 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMP   47 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            3589999999999999999999888999999875

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.46  E-value=0.00028  Score=67.52  Aligned_cols=109  Identities=19%  Similarity=0.222  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCc--EEEEeccCceeecCCCCCCChhHHHHhhCc-cccChHHHHHHHHHHHHHhcC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEK--VYHSTRRGYHYYPKFIDGKPTPQWMLQLGN-KFSSKEETMAYIKQVFKLAGF  212 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~--V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~  212 (396)
                      .++|+|||+|..|+-+|..|++.+.+  |+++.+.+.....+.    +       ++. .+..                 
T Consensus         9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~----~-------l~~~~~~~-----------------   60 (415)
T 3lxd_A            9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERP----P-------LSKEYLAR-----------------   60 (415)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSG----G-------GGTTTTTT-----------------
T ss_pred             CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcc----c-------CCHHHHcC-----------------
Confidence            46899999999999999999998766  999998764211000    0       000 0000                 


Q ss_pred             CCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--CeEEecCCcEecCcEEEEccCCCCCCCCC
Q psy2343         213 DGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRHFPFI  286 (396)
Q Consensus       213 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~~~~l  286 (396)
                      ..      .+        ..+.....+.+....|++  ...+..++.  ..|.+.+|+.+.+|.+|+|||.++..+-+
T Consensus        61 ~~------~~--------~~~~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i  124 (415)
T 3lxd_A           61 EK------TF--------ERICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSC  124 (415)
T ss_dssp             SS------CS--------GGGBSSCHHHHHHTTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCBT
T ss_pred             CC------CH--------HHhccCCHHHHHHCCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCCC
Confidence            00      00        000000011112224554  236777764  46888999999999999999988765533

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.46  E-value=0.00031  Score=69.03  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=31.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCce
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH  171 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~  171 (396)
                      ++|||||+|..|+.+|..|.+...+|+++.+++.+
T Consensus        43 prVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~   77 (502)
T 4g6h_A           43 PNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYF   77 (502)
T ss_dssp             CEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEE
T ss_pred             CCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCc
Confidence            58999999999999999998877899999998754

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.46  E-value=0.00014  Score=70.88  Aligned_cols=35  Identities=23%  Similarity=0.157  Sum_probs=30.2

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCc
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGY  170 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~  170 (396)
                      .++|+|||+|.+|+-+|..|++.  +.+|+++.+++.
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~   39 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASR   39 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC--
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCc
Confidence            36899999999999999999987  789999999864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.44  E-value=0.00012  Score=67.68  Aligned_cols=34  Identities=15%  Similarity=0.163  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~   55 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMM   55 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            4689999999999999999999999999999854

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.43  E-value=0.00022  Score=67.07  Aligned_cols=35  Identities=23%  Similarity=0.383  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .|.+|+|||+|..|+.+|..|++.+ +|+++.+.+.
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~   41 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPV   41 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSS
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCC
Confidence            4789999999999999999999888 9999998763

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.41  E-value=0.0001  Score=71.33  Aligned_cols=34  Identities=21%  Similarity=0.251  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~  169 (396)
                      .++|+|||+|.+|+.+|..|++.  ..+|+++.+.+
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~   38 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATE   38 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSS
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence            46899999999999999999987  67899999876

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.40  E-value=0.00024  Score=65.37  Aligned_cols=32  Identities=16%  Similarity=0.267  Sum_probs=30.1

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ++|+|||+|.+|+-+|..|++.+.+|+++.+.
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   40 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG   40 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC
Confidence            57999999999999999999998999999986

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.38  E-value=0.00043  Score=66.12  Aligned_cols=106  Identities=13%  Similarity=0.172  Sum_probs=64.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCC--cEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFD  213 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~--~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  213 (396)
                      .++|+|||+|..|+.+|..|++.+.  +|+++.+.+..  |.   ..+          .+..     .+..    ...  
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~--~~---~~~----------~~~~-----~~~~----~~~--   60 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER--PY---DRP----------PLSK-----DFMA----HGD--   60 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC--CB---CSG----------GGGT-----HHHH----HCC--
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCC--cc---cCC----------CCCH-----HHhC----CCc--
Confidence            4679999999999999999998765  59999987632  10   000          0000     0100    000  


Q ss_pred             CCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--CeEEecCCcEecCcEEEEccCCCCCCCCC
Q psy2343         214 GVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRHFPFI  286 (396)
Q Consensus       214 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~~~~l  286 (396)
                      ....              .+.     .+.+.++++  ...+..++.  ..|.+.+|+.+.+|.+|+|||.++..|-+
T Consensus        61 ~~~~--------------~~~-----~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~i  118 (408)
T 2gqw_A           61 AEKI--------------RLD-----CKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT  118 (408)
T ss_dssp             GGGS--------------BCC-----CTTSCSCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGG
T ss_pred             hhhh--------------hHH-----HHHHCCCEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCc
Confidence            0000              000     122234443  234677763  57888899999999999999998765533

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=97.37  E-value=0.00046  Score=62.94  Aligned_cols=32  Identities=16%  Similarity=0.257  Sum_probs=29.3

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|..|+-+|..+++.+.+|+++.+..
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~   39 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNT   39 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            69999999999999999999999999998753

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.35  E-value=0.00037  Score=58.19  Aligned_cols=61  Identities=20%  Similarity=0.335  Sum_probs=53.3

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      ....++.+++.+.+++++++  ++++ +|++++.+++.|.|++++| ++.+|.||+|+|.  .|+++
T Consensus        53 ~~~~~~~~~l~~~~~~~gv~--v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~--~~~~~  113 (180)
T 2ywl_A           53 PSGEELLRRLEAHARRYGAE--VRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHK--DPTLP  113 (180)
T ss_dssp             CCHHHHHHHHHHHHHHTTCE--EEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTT--CCHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCE--EEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCC--CCCcc
Confidence            45789999999999999987  8899 9999998777799998888 7899999999999  56544

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=97.35  E-value=0.00042  Score=66.34  Aligned_cols=62  Identities=16%  Similarity=0.204  Sum_probs=54.9

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY  111 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~  111 (396)
                      ...++.++|.+.+++.++.  ++++++|++|..+++.|.|++.+| ++.+|+||+|||.++.|..
T Consensus       130 ~~~~l~~~L~~~l~~~Gv~--i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S~p~~  191 (417)
T 3v76_A          130 SAKDIIRMLMAEMKEAGVQ--LRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKSIPKM  191 (417)
T ss_dssp             CHHHHHHHHHHHHHHHTCE--EECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSSCGGG
T ss_pred             CHHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCccCCCC
Confidence            4679999999999999987  999999999999888899999888 6899999999999775543

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.33  E-value=0.00027  Score=64.52  Aligned_cols=31  Identities=26%  Similarity=0.402  Sum_probs=28.3

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      +|+|||+|.+|+.+|..|++.+.+|+++.++
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~   33 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            6999999999999999999998899998653

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.31  E-value=0.00054  Score=62.46  Aligned_cols=31  Identities=13%  Similarity=0.230  Sum_probs=29.0

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCC-cEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSE-KVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~  168 (396)
                      +|+|||+|..|+-+|..|++.+. +|+++.+.
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~   34 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG   34 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSS
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCC
Confidence            79999999999999999999888 99999885

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=97.23  E-value=0.00041  Score=65.87  Aligned_cols=35  Identities=26%  Similarity=0.209  Sum_probs=32.1

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      ..+|+|||+|.+|+-+|..|++.+.+|+++.+.+.
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   39 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            45899999999999999999999999999998764

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.22  E-value=0.00063  Score=68.23  Aligned_cols=98  Identities=12%  Similarity=0.056  Sum_probs=68.1

Q ss_pred             ChHHHHHHHHHHHHH-cCCCCceEeCcEEEEEEEeCCe-EEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceee
Q psy2343          47 NHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILH  124 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~-~~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~h  124 (396)
                      .+..+.+++...+++ .++.  + ++++|+.+..+++. +.|.+.+|.++.+|+||+|||.  .+..+.++|...     
T Consensus       122 Dr~~~~~~L~e~Le~~~GV~--I-~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt--~s~~~~i~G~~~-----  191 (651)
T 3ces_A          122 DRVLYRQAVRTALENQPNLM--I-FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGT--FLDGKIHIGLDN-----  191 (651)
T ss_dssp             CHHHHHHHHHHHHHTCTTEE--E-EECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCST--TTCCEEECC--------
T ss_pred             CHHHHHHHHHHHHHhCCCCE--E-EEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCC--CccCccccCccc-----
Confidence            356889999999988 5775  5 68899999876554 5788888888999999999999  444444555110     


Q ss_pred             cccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343         125 SMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR  167 (396)
Q Consensus       125 s~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r  167 (396)
                               +.+.+   +| |.+|+++|..|.+.+.+|+.+..
T Consensus       192 ---------~~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~t  221 (651)
T 3ces_A          192 ---------YSGGR---AG-DPPSIPLSRRLRELPLRVGRLKT  221 (651)
T ss_dssp             -----------------------CCHHHHHHHTTTCCEEEECC
T ss_pred             ---------CCCCC---cc-chhhhHHHHHHHhcCCeEEEecC
Confidence                     11223   56 88999999999999999988853

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.22  E-value=0.002  Score=63.85  Aligned_cols=33  Identities=15%  Similarity=0.118  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHh-cCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDAS-HHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~-~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|+ +.+.+|+++.+.+
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~   42 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKAD   42 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCC
Confidence            47999999999999999999 8888999999864

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.20  E-value=0.00021  Score=65.22  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=29.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEE-Eecc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYH-STRR  168 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l-~~r~  168 (396)
                      ++|+|||+|..|+.+|..|++.+.+|++ +.+.
T Consensus         5 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~   37 (315)
T 3r9u_A            5 LDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG   37 (315)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            5899999999999999999998889999 8873

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.20  E-value=0.00042  Score=60.00  Aligned_cols=36  Identities=17%  Similarity=0.240  Sum_probs=33.0

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      +++||+|+|||+|.+|.-.+..|.+.+.+|+++.+.
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            568999999999999999999999998999999764

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.20  E-value=0.0011  Score=62.39  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      ...+|+|||+|.+|+-+|..|++.+.+|+++.+.+.
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~   45 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSE   45 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            356899999999999999999999999999998753

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=97.19  E-value=0.00022  Score=70.07  Aligned_cols=73  Identities=21%  Similarity=0.194  Sum_probs=49.6

Q ss_pred             EcCEEEEcccCCCCCCCCCCCC-Ccccceeeccc----------------CCCCCCCCCCeEEEEcCCCcHHHHHHHHhc
Q psy2343          95 KYDFIAVCNGAQRVARYPNYSG-YFSGEILHSMD----------------YKSPDQIRNKRVLVVGAGNSGCDIAVDASH  157 (396)
Q Consensus        95 ~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs~~----------------~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~  157 (396)
                      .||.+++++|.  .|..|.+.+ ...+ ++....                +.....-..++|+|||||.+|+.+|..|++
T Consensus        37 ~~~~l~~~~g~--~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~  113 (497)
T 2bry_A           37 SFQGLCRALGV--ESGGGLSQYHKIKA-QLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELAL  113 (497)
T ss_dssp             HHHHHHHHHTC--CTTCHHHHHHHHHH-TCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCC--CCCCCcEeehhhHH-HHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHH
Confidence            36779999998  576665544 1111 000000                111112246799999999999999999999


Q ss_pred             CCCcEEEEeccCc
Q psy2343         158 HSEKVYHSTRRGY  170 (396)
Q Consensus       158 ~~~~V~l~~r~~~  170 (396)
                      .+.+|+++.+.+.
T Consensus       114 ~G~~V~liEk~~~  126 (497)
T 2bry_A          114 LGARVVLVEKRIK  126 (497)
T ss_dssp             TTCEEEEEESCSS
T ss_pred             CCCeEEEEEeccc
Confidence            9999999998763

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.13  E-value=0.0023  Score=60.63  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=31.6

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+|+|||+|.+|+-+|..|++.+.+|+++.|.+
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   59 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN   59 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999999875

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=97.11  E-value=0.00062  Score=64.60  Aligned_cols=34  Identities=21%  Similarity=0.229  Sum_probs=31.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+|+|||+|.+|+-+|..|++.+.+|+++.+++.
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~   40 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARR   40 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            4799999999999999999999999999998753

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.11  E-value=0.0023  Score=63.49  Aligned_cols=33  Identities=24%  Similarity=0.204  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|.+.+.+|+++.+.+
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~   42 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGE   42 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            479999999999999999999888999999875

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.08  E-value=0.0025  Score=58.06  Aligned_cols=31  Identities=32%  Similarity=0.395  Sum_probs=29.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .|+|||+|..|+.+|..|++.+.+|+++.+.
T Consensus         8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~   38 (312)
T 4gcm_A            8 DIAIIGAGPAGMTAAVYASRANLKTVMIERG   38 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence            6999999999999999999999999999875

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.08  E-value=0.00083  Score=61.25  Aligned_cols=32  Identities=19%  Similarity=0.158  Sum_probs=29.6

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|..|+.+|..+++.+.+|+++.+..
T Consensus         6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~   37 (314)
T 4a5l_A            6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM   37 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            69999999999999999999999999998753

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.03  E-value=0.00088  Score=66.75  Aligned_cols=34  Identities=24%  Similarity=0.438  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~  170 (396)
                      ++|+|||+|..|+-+|..|++.  ..+|+++.+.+.
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~   37 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEY   37 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCC
Confidence            5899999999999999999987  678999998864

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.02  E-value=0.001  Score=64.60  Aligned_cols=32  Identities=28%  Similarity=0.441  Sum_probs=30.0

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||+|..|+-+|..|++.+.+|+++.+++
T Consensus         6 DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~   37 (466)
T 3l8k_A            6 DVVVIGAGGAGYHGAFRLAKAKYNVLMADPKG   37 (466)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence            79999999999999999999999999999765

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.00  E-value=0.002  Score=62.12  Aligned_cols=34  Identities=29%  Similarity=0.395  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCC--cEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~--~V~l~~r~~  169 (396)
                      .++|+|||+|.+|+-+|..|++.+.  +|+++.+++
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~   41 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   41 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCC
Confidence            4689999999999999999999988  999999874

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.98  E-value=0.00097  Score=65.79  Aligned_cols=33  Identities=27%  Similarity=0.357  Sum_probs=29.5

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ..+|+|||||..|+.+|..|++.+.+|+++.++
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~  244 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER  244 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCeEEEEECC
Confidence            457999999999999999999998899998753

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=96.97  E-value=0.0017  Score=62.66  Aligned_cols=61  Identities=21%  Similarity=0.208  Sum_probs=53.6

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEccCcEEEcCEEEEcccCCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQRVA  109 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g~~~~~d~vvvAtG~~~~p  109 (396)
                      ....+.+.|.+.+++.++.  |+++++|+++..+++. |.|++.+|+++.+|.||+|||.++.|
T Consensus       132 ~~~~l~~~L~~~~~~~GV~--i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s~~  193 (447)
T 2i0z_A          132 KAQSVVDALLTRLKDLGVK--IRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVP  193 (447)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSSG
T ss_pred             CHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCcCC
Confidence            4688999999999998987  9999999999987666 89999888778999999999997644

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=96.97  E-value=0.0013  Score=60.48  Aligned_cols=31  Identities=23%  Similarity=0.254  Sum_probs=29.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTR  167 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r  167 (396)
                      .+|+|||+|..|+-+|..|++.+.+|+++.+
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~   39 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEG   39 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence            5799999999999999999999889999987

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=96.97  E-value=0.0022  Score=62.24  Aligned_cols=33  Identities=18%  Similarity=0.301  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCcHHHHHHHHhc---CCCc---EEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASH---HSEK---VYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~---~~~~---V~l~~r~~  169 (396)
                      ++|+|||+|.+|+-+|..|++   .+.+   |+++.+++
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~   41 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQA   41 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCC
Confidence            689999999999999999998   8888   99999875

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=96.95  E-value=0.0018  Score=62.12  Aligned_cols=60  Identities=18%  Similarity=0.131  Sum_probs=53.2

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCc---EEEEEEEeCCeEE-EEEccCcEEEcCEEEEcccCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNT---EVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQRV  108 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t---~V~~v~~~~~~~~-V~~~~g~~~~~d~vvvAtG~~~~  108 (396)
                      ....+.+.|.+.+++.|+.  |++++   +|++|..+++++. |++.+|+++.+|.||+|||.++.
T Consensus       159 ~~~~~~~~L~~~a~~~Gv~--i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          159 HARNALVAAAREAQRMGVK--FVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAG  222 (438)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred             cHHHHHHHHHHHHHhcCCE--EEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChh
Confidence            3468999999999999987  99999   9999999888888 99998977999999999999753

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=96.92  E-value=0.0024  Score=58.94  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .++|+|||+|..|+-+|..|++.+.+|+++.+.
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   46 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT   46 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            468999999999999999999998899999864

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.92  E-value=0.0022  Score=65.36  Aligned_cols=59  Identities=12%  Similarity=0.271  Sum_probs=53.0

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ....+.+.|.+.+++.|+.  |+++++|+++..++++|.|++.+|.++.+|.||+|||.++
T Consensus       415 ~p~~l~~aL~~~a~~~Gv~--i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          415 CPAELTRNVLELAQQQGLQ--IYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGG
T ss_pred             CHHHHHHHHHHHHHhCCCE--EEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcch
Confidence            4578899999999999987  9999999999999888999998877899999999999964

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=96.89  E-value=0.0017  Score=60.75  Aligned_cols=63  Identities=19%  Similarity=0.270  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN  113 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~  113 (396)
                      ...+.+.|.+.+++.++.  ++++++|++|+.+++.|.|++.+|+ +.+|.||+|+|.++....+.
T Consensus       148 ~~~l~~~l~~~~~~~G~~--i~~~~~V~~i~~~~~~~~v~~~~g~-~~a~~vV~a~G~~s~~l~~~  210 (372)
T 2uzz_A          148 SELAIKTWIQLAKEAGCA--QLFNCPVTAIRHDDDGVTIETADGE-YQAKKAIVCAGTWVKDLLPE  210 (372)
T ss_dssp             HHHHHHHHHHHHHHTTCE--EECSCCEEEEEECSSSEEEEESSCE-EEEEEEEECCGGGGGGTSTT
T ss_pred             HHHHHHHHHHHHHHCCCE--EEcCCEEEEEEEcCCEEEEEECCCe-EEcCEEEEcCCccHHhhccc
Confidence            458889999999998887  8899999999988777999888775 89999999999976443333

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=96.87  E-value=0.0055  Score=57.10  Aligned_cols=33  Identities=21%  Similarity=0.385  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+.+|..|++.+. +|+++.+++
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            479999999999999999999887 899999875

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.86  E-value=0.00094  Score=64.77  Aligned_cols=32  Identities=19%  Similarity=0.296  Sum_probs=29.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .+|+|||+|..|+.+|..+++.+.+|+++.+.
T Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~   37 (458)
T 1lvl_A            6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (458)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEccC
Confidence            57999999999999999999988999999983

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=96.84  E-value=0.0018  Score=64.74  Aligned_cols=98  Identities=13%  Similarity=0.145  Sum_probs=72.0

Q ss_pred             ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCe-EEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceee
Q psy2343          47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILH  124 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~h  124 (396)
                      .+..+.++|.+.++.+ ++.  + ++++|+.+..+++. +.|.+.+|.++.+|+||+|||.  .++.+.++|.    ...
T Consensus       121 Dr~~~~~~L~~~Le~~~GVe--I-~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~--~s~~~~~~G~----~~~  191 (637)
T 2zxi_A          121 DKKRYREYMKKVCENQENLY--I-KQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGT--FLNGVIYIGD----KMI  191 (637)
T ss_dssp             CHHHHHHHHHHHHHTCTTEE--E-EESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTT--CBTCEEEETT----EEE
T ss_pred             CHHHHHHHHHHHHHhCCCCE--E-EEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCC--CccCceeccc----eec
Confidence            4578999999999884 775  5 68899999876554 4588888888999999999999  4554555551    111


Q ss_pred             cccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343         125 SMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR  167 (396)
Q Consensus       125 s~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r  167 (396)
                      .          +.+   +| +.+|.+++..|.+.+.++..+.+
T Consensus       192 ~----------~Gr---~G-~~~A~~la~~L~~lG~~v~~l~t  220 (637)
T 2zxi_A          192 P----------GGR---LG-EPRSEGLSDFYRRFDFPLIRFKT  220 (637)
T ss_dssp             E----------CSB---TT-BCCBCTHHHHHHHTTCCCEEEEE
T ss_pred             C----------CCC---CC-chhHHHHHHHHHhcCCceEEecC
Confidence            1          122   34 67889999999999888776654

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=96.79  E-value=0.001  Score=63.29  Aligned_cols=35  Identities=20%  Similarity=0.211  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +..+|+|||+|.+|+-+|..|++.+.+|+++.|.+
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~   56 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVK   56 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            44589999999999999999999999999999976

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.77  E-value=0.00028  Score=68.39  Aligned_cols=36  Identities=25%  Similarity=0.181  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -.+++|+|||+|.+|+.+|..|++.+.+|+++.+.+
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~  155 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYD  155 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            357899999999999999999999888999999875

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=96.77  E-value=0.0083  Score=59.40  Aligned_cols=33  Identities=33%  Similarity=0.273  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~   49 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAG   49 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            479999999999999999999988999999875

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=96.77  E-value=0.0013  Score=61.55  Aligned_cols=58  Identities=14%  Similarity=0.221  Sum_probs=51.3

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ....+.+.|.+.+++.|+.  |+++++|++|..++++|.|++.+| ++.+|+||+|+|.++
T Consensus       152 ~~~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          152 DTDALHQGYLRGIRRNQGQ--VLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGH
T ss_pred             CHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhH
Confidence            4578889999999999987  899999999999888899998877 689999999999864

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=96.76  E-value=0.00055  Score=65.54  Aligned_cols=34  Identities=24%  Similarity=0.449  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~   60 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHAR   60 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3579999999999999999999999999999875

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=96.74  E-value=0.002  Score=64.55  Aligned_cols=36  Identities=19%  Similarity=0.426  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCc
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGY  170 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~  170 (396)
                      ..++|+|||+|..|+-+|..|++.  +.+|+++.+++.
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~   72 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY   72 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCC
Confidence            457999999999999999999987  789999999864

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=96.74  E-value=0.0011  Score=65.56  Aligned_cols=34  Identities=18%  Similarity=0.170  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~  140 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK  140 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccC
Confidence            4689999999999999999999999999999875

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=96.72  E-value=0.0042  Score=56.75  Aligned_cols=32  Identities=31%  Similarity=0.340  Sum_probs=29.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .+|+|||+|.+|+-+|..|++.+.+|+++.+.
T Consensus        17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   48 (319)
T 3cty_A           17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDKA   48 (319)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC
Confidence            57999999999999999999998999999984

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=96.70  E-value=0.0016  Score=59.45  Aligned_cols=32  Identities=25%  Similarity=0.339  Sum_probs=29.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ++|+|||+|..|+-+|..|++.+.+|+++.+.
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   37 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEccC
Confidence            57999999999999999999998899999853

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.68  E-value=0.00088  Score=64.93  Aligned_cols=34  Identities=18%  Similarity=0.030  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhc-C------CCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASH-H------SEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~-~------~~~V~l~~r~~  169 (396)
                      .++|+|||+|.+|+.+|..|++ .      ..+|+++.+.+
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~   43 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   43 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCC
Confidence            4689999999999999999998 6      78899999875

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=96.67  E-value=0.0027  Score=59.07  Aligned_cols=59  Identities=10%  Similarity=0.123  Sum_probs=50.8

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEccC--cEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNG--KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g--~~~~~d~vvvAtG~~~  107 (396)
                      ....+.+.|.+.+++.|+.  ++++++|+++..++++ |.|++.+|  .++.+|.||+|+|.++
T Consensus       148 ~~~~~~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          148 DSHALMLAYQGDAESDGAQ--LVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             CHHHHHHHHHHHHHHCCCE--EECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcch
Confidence            4578899999999999987  9999999999987554 99998887  3689999999999965

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=96.67  E-value=0.0023  Score=60.59  Aligned_cols=60  Identities=13%  Similarity=0.142  Sum_probs=53.6

Q ss_pred             CChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeE--EEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIW--EVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~--~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .++.++.+.|.+.+++. ++.  ++++++|++++.++++|  .|++.+|+++.+|.||.|+|.++
T Consensus       104 ~~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s  166 (399)
T 2x3n_A          104 MPCESLRRLVLEKIDGEATVE--MLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIAS  166 (399)
T ss_dssp             CCHHHHHHHHHHHHTTCTTEE--EECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTC
T ss_pred             ccHHHHHHHHHHHhhhcCCcE--EEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCCh
Confidence            57889999999999887 776  89999999999987788  89998888899999999999965

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=96.63  E-value=0.0017  Score=63.32  Aligned_cols=33  Identities=21%  Similarity=0.247  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|..|+-+|..|++.+.+|+++.+..
T Consensus        21 ~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~   53 (478)
T 3dk9_A           21 YDYLVIGGGSGGLASARRAAELGARAAVVESHK   53 (478)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            579999999999999999999999999999753

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.62  E-value=0.0031  Score=64.46  Aligned_cols=59  Identities=14%  Similarity=0.256  Sum_probs=51.5

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc-EEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~-~~~~d~vvvAtG~~~  107 (396)
                      ....+.+.|.+.+++.|+.  |+++++|+++..++++|.|++.+|. ++.+|.||+|||.++
T Consensus       410 ~p~~l~~aL~~~a~~~Gv~--i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          410 CPSDLTHALMMLAQQNGMT--CHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGT
T ss_pred             CHHHHHHHHHHHHHhCCCE--EEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcch
Confidence            4578889999999999987  9999999999998778999998876 689999999999974

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=96.59  E-value=0.0042  Score=54.13  Aligned_cols=58  Identities=7%  Similarity=-0.036  Sum_probs=48.1

Q ss_pred             ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCe-EEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .+.++.++|.+.++++ ++.  ++ +++|++|..+++. +.|.+.+|+++.+|.||+|||.++
T Consensus        66 ~~~~~~~~l~~~~~~~~gv~--i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s  125 (232)
T 2cul_A           66 RVWAFHARAKYLLEGLRPLH--LF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL  125 (232)
T ss_dssp             CHHHHHHHHHHHHHTCTTEE--EE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             CHHHHHHHHHHHHHcCCCcE--EE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence            5778999999999987 765  55 6799999887655 568888887799999999999954

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=96.53  E-value=0.0034  Score=59.36  Aligned_cols=33  Identities=30%  Similarity=0.323  Sum_probs=30.8

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      +|+|||+|.+|+=+|..|++.+-+|+++.|.+.
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            799999999999999999999999999998753

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.51  E-value=0.0037  Score=60.15  Aligned_cols=32  Identities=19%  Similarity=0.274  Sum_probs=28.2

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~  169 (396)
                      ||+|||+|..|..+|..|++.+  .+|+++.+.+
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~   35 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDR   35 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence            6999999999999999998865  4699999875

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=96.49  E-value=0.0018  Score=60.04  Aligned_cols=59  Identities=19%  Similarity=0.379  Sum_probs=48.3

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      |.....+..+++.++++.+..  |+++++|++|++++++|+|++.+|+++.||+||+|+..
T Consensus       105 ~~~~~g~~~l~~~l~~~~g~~--i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          105 FVAPQGISSIIKHYLKESGAE--VYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPV  163 (342)
T ss_dssp             EECTTCTTHHHHHHHHHHTCE--EESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCH
T ss_pred             eecCCCHHHHHHHHHHhcCCE--EEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCH
Confidence            333445566777777777765  99999999999988889999988877899999999986

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=96.49  E-value=0.0059  Score=59.05  Aligned_cols=81  Identities=15%  Similarity=0.102  Sum_probs=54.1

Q ss_pred             cCCCCceEeCcEEEEEEEeCCeEEEEEc---cCcE--EEcCEEEEcccCCCCCC--CCCCCC--CcccceeecccCCCCC
Q psy2343          62 FDVYNHSIFNTEVINLEQYEDIWEVELS---NGKK--KKYDFIAVCNGAQRVAR--YPNYSG--YFSGEILHSMDYKSPD  132 (396)
Q Consensus        62 ~~l~~~i~~~t~V~~v~~~~~~~~V~~~---~g~~--~~~d~vvvAtG~~~~p~--~P~~~g--~~~g~~~hs~~~~~~~  132 (396)
                      .++.  ++++++|++|+.+++.|.|++.   +|+.  +.+|.||+|||.  .|+  .+-+.+  ...|.+....+++-..
T Consensus       329 ~~v~--i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~--~p~~~~~~l~~l~~~~g~i~v~~~~~~~~  404 (463)
T 3s5w_A          329 PRHA--FRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGY--ERQLHRQLLEPLAEYLGDHEIGRDYRLQT  404 (463)
T ss_dssp             CCSE--EETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCE--ECCC-CTTTGGGGGGBC--CCCTTSBCCB
T ss_pred             CCeE--EEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCC--CCCCccchhHHHHHHhCCcccCccccccc
Confidence            3554  8899999999998889999987   5653  889999999999  666  333343  1115555555554332


Q ss_pred             -CCCCCeEEEEcCCC
Q psy2343         133 -QIRNKRVLVVGAGN  146 (396)
Q Consensus       133 -~~~~k~VvVVG~G~  146 (396)
                       .-...+|-++|...
T Consensus       405 ~~~~~~~Ifa~G~~~  419 (463)
T 3s5w_A          405 DERCKVAIYAQGFSQ  419 (463)
T ss_dssp             CTTBCSEEEESSCCH
T ss_pred             CCCCCCeEEEcCCCc
Confidence             11245788888633

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.47  E-value=0.0053  Score=57.61  Aligned_cols=59  Identities=15%  Similarity=0.057  Sum_probs=51.1

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .....+.+.|.+.+++.|+.  ++++++|+++..+++.|. |++.+| ++.+|.||+|+|.++
T Consensus       146 ~~~~~l~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          146 ADPFEATTAFAVKAKEYGAK--LLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             ECHHHHHHHHHHHHHHCCCE--EECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence            34678899999999999987  899999999998878888 888777 689999999999864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.39  E-value=0.00053  Score=73.24  Aligned_cols=35  Identities=11%  Similarity=0.141  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~  169 (396)
                      .+++|+|||+|..|+.+|..|++.+. +|+++.+.+
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~  221 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQE  221 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            37899999999999999999999987 799999864

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=96.38  E-value=0.006  Score=57.90  Aligned_cols=58  Identities=16%  Similarity=0.203  Sum_probs=51.8

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .++..+.++|.+.+..  .  .|+++++|++++.++++|+|++.+|+++.+|.||.|+|.++
T Consensus       124 i~r~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S  181 (407)
T 3rp8_A          124 VSRAELQREMLDYWGR--D--SVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHS  181 (407)
T ss_dssp             EEHHHHHHHHHHHHCG--G--GEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTC
T ss_pred             EEHHHHHHHHHHhCCc--C--EEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcCh
Confidence            4678999999999876  3  39999999999999889999999998899999999999965

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=96.36  E-value=0.0083  Score=59.25  Aligned_cols=61  Identities=15%  Similarity=0.178  Sum_probs=54.0

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC----eEEEEEccC---cEEEcCEEEEcccCCC
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED----IWEVELSNG---KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~----~~~V~~~~g---~~~~~d~vvvAtG~~~  107 (396)
                      ..++..+.++|.+.+++.++.  |+++++|++++.+++    +++|++.++   .++.+|+||.|+|.++
T Consensus       116 ~i~~~~l~~~L~~~a~~~gv~--i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          116 MLSQDKLEPILLAQARKHGGA--IRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCE--EESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             ccCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence            356889999999999998877  999999999999877    899988776   5689999999999976

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.34  E-value=0.00098  Score=64.65  Aligned_cols=34  Identities=24%  Similarity=0.275  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~  169 (396)
                      .++|+|||+|.+|+.+|..|++.+  .+|+++.+.+
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~   41 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   41 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence            468999999999999999999876  7899999875

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=96.34  E-value=0.0092  Score=58.43  Aligned_cols=60  Identities=17%  Similarity=0.207  Sum_probs=53.0

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc---EEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK---KKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~---~~~~d~vvvAtG~~~  107 (396)
                      .++.++.+.|.+.+...++.  |+++++|++++.+++.++|++.++.   ++.+|+||.|.|.++
T Consensus       103 i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A          103 VPQSVTETHLEQWATGLGAD--IRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             EEHHHHHHHHHHHHHHTTCE--EEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred             cCHHHHHHHHHHHHHHCCCE--EECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence            35789999999999998876  9999999999998888999887764   689999999999976

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=96.34  E-value=0.0037  Score=62.70  Aligned_cols=33  Identities=21%  Similarity=0.383  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -+|+|||||..|+.+|..+++.+.+|.++.+.+
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   61 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI   61 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence            479999999999999999999999999999863

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=96.31  E-value=0.0073  Score=59.67  Aligned_cols=58  Identities=24%  Similarity=0.270  Sum_probs=50.5

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC-eEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~-~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ..++.+.|.+.++..++.  |+++++|++|..+++ .+.|++.+|+++.+|.||+|+|..+
T Consensus       219 ~~~l~~~L~~~l~~~Gv~--I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          219 LVTMIEKMRATIIELGGE--IRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSA  277 (549)
T ss_dssp             HHHHHHHHHHHHHHTTCE--EESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred             HHHHHHHHHHHHHhcCCE--EEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence            367889999999999987  999999999998755 4668888898899999999999954

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=96.30  E-value=0.004  Score=58.42  Aligned_cols=59  Identities=14%  Similarity=0.116  Sum_probs=51.3

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ....++.+.|.+.+++.|+.  ++++++|++|..+++.|.|++.+| ++.+|.||+|+|.++
T Consensus       161 ~~~~~~~~~l~~~~~~~g~~--i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          161 VEPYFVCKAYVKAAKMLGAE--IFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS  219 (382)
T ss_dssp             CCHHHHHHHHHHHHHHTTCE--EETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred             EcHHHHHHHHHHHHHHCCCE--EEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhH
Confidence            45688999999999998886  899999999998877888888777 689999999999964

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=96.30  E-value=0.00072  Score=64.39  Aligned_cols=33  Identities=18%  Similarity=0.222  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..+++.+.+|+++.+.+
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~   37 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK   37 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            369999999999999999999999999999875

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=96.23  E-value=0.0077  Score=55.64  Aligned_cols=33  Identities=24%  Similarity=0.202  Sum_probs=29.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHhc---CCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASH---HSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~---~~~~V~l~~r~~  169 (396)
                      ++|+|||+|.+|+-+|..|++   .+.+|+++.+++
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~   37 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD   37 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence            379999999999999999999   788999999864

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=96.23  E-value=0.0085  Score=56.44  Aligned_cols=60  Identities=17%  Similarity=0.185  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY  111 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~  111 (396)
                      ..++.+++.+.+++.++.  ++++++|++|+.+++.+.|++.+|+++.+|.||+|+|.  .|+.
T Consensus       186 ~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~--~p~~  245 (384)
T 2v3a_A          186 HPAAAKAVQAGLEGLGVR--FHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGL--RPRT  245 (384)
T ss_dssp             CHHHHHHHHHHHHTTTCE--EEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE--EECC
T ss_pred             CHHHHHHHHHHHHHcCCE--EEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCC--CcCH
Confidence            467889999999998987  99999999999887788898888888999999999998  6664

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=96.20  E-value=0.0059  Score=57.78  Aligned_cols=59  Identities=17%  Similarity=0.294  Sum_probs=49.4

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV  108 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~  108 (396)
                      .++.++.++|.+.+..  .  .|+++++|++|+.++++|+|++.+|+++.+|.||.|+|.++.
T Consensus       125 i~r~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          125 INRNDLRAILLNSLEN--D--TVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK  183 (398)
T ss_dssp             ECHHHHHHHHHHTSCT--T--SEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred             ECHHHHHHHHHhhcCC--C--EEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence            4677888888876643  3  489999999999987889999998888999999999999663

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=96.19  E-value=0.01  Score=58.10  Aligned_cols=60  Identities=17%  Similarity=0.153  Sum_probs=53.0

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc---EEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK---KKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~---~~~~d~vvvAtG~~~  107 (396)
                      .++..+.+.|.+.+.+.++.  |+++++|++++.+++.++|++.++.   ++.+|+||.|.|.++
T Consensus       104 i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A          104 VPQSTTESVLEEWALGRGAE--LLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             EEHHHHHHHHHHHHHHTTCE--EEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred             cCHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence            35789999999999998876  9999999999998888999887764   689999999999976

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=96.18  E-value=0.0089  Score=57.71  Aligned_cols=62  Identities=16%  Similarity=0.000  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN  113 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~  113 (396)
                      ..++.+.+.+.+++.+++  ++++++|++|+.+++.+.|++++++++.+|.||+|+|.  .|+.+.
T Consensus       207 ~~~~~~~l~~~l~~~Gv~--i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~--~p~~~~  268 (455)
T 2yqu_A          207 DLEVSRAAERVFKKQGLT--IRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGR--RPYTEG  268 (455)
T ss_dssp             CHHHHHHHHHHHHHHTCE--EECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE--EECCTT
T ss_pred             CHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCC--CcCCCC
Confidence            367888888888888987  99999999999887778888878888999999999999  676643

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=96.16  E-value=0.011  Score=55.80  Aligned_cols=56  Identities=16%  Similarity=0.030  Sum_probs=48.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      ...+.+.|.+.+++.++.  ++++++|+++..+++.|.|++.++ ++.+|.||+|+|.+
T Consensus       152 ~~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~  207 (397)
T 2oln_A          152 VRGTLAALFTLAQAAGAT--LRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHHHHHHHHHHTTCE--EEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHcCCE--EECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcC
Confidence            457788888888888887  999999999998878898887666 58999999999986

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=96.15  E-value=0.0085  Score=56.26  Aligned_cols=57  Identities=21%  Similarity=0.264  Sum_probs=50.1

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .++.++.++|.+.+...++.  ++++++|++++. ++  .|++.+|+++.+|.||.|+|.++
T Consensus       104 ~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~-~~--~v~~~~g~~~~ad~vV~AdG~~s  160 (379)
T 3alj_A          104 MTRSHLHDALVNRARALGVD--ISVNSEAVAADP-VG--RLTLQTGEVLEADLIVGADGVGS  160 (379)
T ss_dssp             EEHHHHHHHHHHHHHHTTCE--EESSCCEEEEET-TT--EEEETTSCEEECSEEEECCCTTC
T ss_pred             ECHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEe-CC--EEEECCCCEEEcCEEEECCCccH
Confidence            46789999999999998877  999999999987 44  88888888899999999999954

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=96.13  E-value=0.0087  Score=56.16  Aligned_cols=58  Identities=21%  Similarity=0.173  Sum_probs=50.0

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ....+.+.|.+.+++.|+.  ++++++|++++.++++|.|++.++ ++.+|.||+|+|.++
T Consensus       148 ~~~~~~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          148 FSENCIRAYRELAEARGAK--VLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN  205 (389)
T ss_dssp             EHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred             eHHHHHHHHHHHHHHCCCE--EEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccH
Confidence            3478889999999999987  899999999998877798888766 589999999999854

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=96.11  E-value=0.013  Score=55.30  Aligned_cols=59  Identities=14%  Similarity=0.138  Sum_probs=49.5

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRV  108 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~  108 (396)
                      .+...+.++|.+.+  -++.  |+++++|++|+.++++|+|++.+|+++.+|.||.|+|.++.
T Consensus        96 ~~~~~l~~~L~~~~--~~~~--i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A           96 TSYDSIYGGLYELF--GPER--YHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             EEHHHHHHHHHHHH--CSTT--EETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             cCHHHHHHHHHHhC--CCcE--EEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence            45677888887775  2554  99999999999988889999999988999999999999663

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=96.09  E-value=0.0082  Score=60.12  Aligned_cols=99  Identities=9%  Similarity=0.026  Sum_probs=69.3

Q ss_pred             ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCeEE-EEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccceee
Q psy2343          47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEILH  124 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~~~-V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~~h  124 (396)
                      .+..+.+++.+.++++ ++.  + ++++|+.+..+++... |.+.+|.++.+|+||+|||.+  ++.+.+.|    ....
T Consensus       115 Dr~~l~~~L~~~l~~~~GV~--I-~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~--s~~~i~~G----~~~~  185 (641)
T 3cp8_A          115 DKTQYSLYMRRIVEHEPNID--L-LQDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTF--LNGLIHIG----MDHF  185 (641)
T ss_dssp             CHHHHHHHHHHHHHTCTTEE--E-EECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTC--BTCEEEET----TEEE
T ss_pred             CHHHHHHHHHHHHHhCCCCE--E-EeeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCC--CCccceee----eeee
Confidence            4568899999999885 765  5 5679999888777665 888888889999999999994  33222222    1100


Q ss_pred             cccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343         125 SMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR  167 (396)
Q Consensus       125 s~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r  167 (396)
                                .+.++  +| +.+|++++..|.+.+.+|..+..
T Consensus       186 ----------~~g~~--vG-~~~a~~la~~L~~~G~kv~~l~t  215 (641)
T 3cp8_A          186 ----------PGGRS--TA-EPPVEGLTESLASLGFSFGRLKT  215 (641)
T ss_dssp             ----------ECSSS--TT-SCCBCSHHHHHHHTTCCEEEEEE
T ss_pred             ----------ccccc--cC-CchhhhhHHHHHhCCceEEeecC
Confidence                      11122  14 67889999999988888866543

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=96.08  E-value=0.0078  Score=58.00  Aligned_cols=33  Identities=27%  Similarity=0.397  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~   59 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   59 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            479999999999999999999989999999875

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.08  E-value=0.0034  Score=64.10  Aligned_cols=35  Identities=34%  Similarity=0.376  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..++|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~  424 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGR  424 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            34789999999999999999999999999999875

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=96.03  E-value=0.016  Score=55.00  Aligned_cols=60  Identities=18%  Similarity=0.130  Sum_probs=50.9

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEE--EEccCc--EEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEV--ELSNGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V--~~~~g~--~~~~d~vvvAtG~~~  107 (396)
                      ..+..+.+.|.+.+++.|+.  |+++++|++|+.+++.+.+  .+.+|+  ++.+|.||.|+|.++
T Consensus       103 ~~r~~~~~~L~~~a~~~gv~--i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          103 VPRGNFDKTLADEAARQGVD--VEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR  166 (421)
T ss_dssp             CCHHHHHHHHHHHHHHHTCE--EECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred             ECHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence            56889999999999998987  9999999999988776654  446777  689999999999854

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=96.02  E-value=0.012  Score=57.78  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -+|+|||+|..|.-+|..|++.+.+|+++.+.+
T Consensus        33 ~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           33 YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            489999999999999999999999999999753

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=96.01  E-value=0.0089  Score=59.53  Aligned_cols=60  Identities=20%  Similarity=0.185  Sum_probs=53.1

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE--ccC-cEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL--SNG-KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~--~~g-~~~~~d~vvvAtG~~~  107 (396)
                      .+...+.+.|.+.++..++.  |+++++|++++.+++.++|++  .+| +++.+|+||.|.|.++
T Consensus       145 i~~~~l~~~L~~~a~~~gv~--i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          145 VPQSRTEALLAEHAREAGAE--IPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             CCHHHHHHHHHHHHHHHTEE--CCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             eCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence            57889999999999988876  899999999999888888888  567 6799999999999976

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=95.97  E-value=0.012  Score=55.35  Aligned_cols=32  Identities=22%  Similarity=0.207  Sum_probs=30.2

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus         4 dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   35 (394)
T 1k0i_A            4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (394)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            69999999999999999999999999999876

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=95.96  E-value=0.0055  Score=58.55  Aligned_cols=47  Identities=15%  Similarity=0.223  Sum_probs=38.9

Q ss_pred             HHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343          56 RSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        56 ~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      +..++..+   .|+++++|++|+.++++++|++.+|+++++|+||+|+|.
T Consensus       211 ~~~~~~~g---~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~  257 (431)
T 3k7m_X          211 DAMSQEIP---EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPM  257 (431)
T ss_dssp             HHHHTTCS---CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCG
T ss_pred             HHHHhhCC---ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCc
Confidence            33344444   499999999999887789999988887999999999994

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=95.91  E-value=0.01  Score=57.88  Aligned_cols=57  Identities=12%  Similarity=0.022  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHcC-CCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          49 SMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~-l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .++.+-|.+.+...+ +.  |+++++|++|+..++++.|++.+|+++.+|+||+|+|...
T Consensus       255 ~~l~~~l~~~l~~~g~~~--i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~  312 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLG--YVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNV  312 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEE--EESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGG
T ss_pred             HHHHHHHHHHhhhcCceE--EEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHH
Confidence            345555555555444 44  8999999999988778999998887899999999999843

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=95.90  E-value=0.0066  Score=60.86  Aligned_cols=32  Identities=19%  Similarity=0.302  Sum_probs=29.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR  167 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r  167 (396)
                      ..+|+|||+|..|+-+|..|++.+.+|+++.+
T Consensus       107 ~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~  138 (598)
T 2x8g_A          107 DYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDY  138 (598)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             cccEEEECCCccHHHHHHHHHhCCCeEEEEec
Confidence            45899999999999999999999999999986

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=95.89  E-value=0.0045  Score=63.03  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=31.6

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++|+|||+|..|+.+|..|++.+.+|+++.+++
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~  406 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS  406 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            4789999999999999999999999999999875

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=95.88  E-value=0.0032  Score=64.71  Aligned_cols=35  Identities=29%  Similarity=0.315  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..++|+|||+|..|+.+|..|++.+.+|+++.+.+
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~  422 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE  422 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            35789999999999999999999999999999875

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=95.82  E-value=0.014  Score=56.91  Aligned_cols=62  Identities=18%  Similarity=0.241  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN  113 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~  113 (396)
                      ..++.+.+.+.+++.|+.  ++++++|++|+.+++++.|++.+|+++.+|.||+|+|.  .|+...
T Consensus       231 ~~~~~~~l~~~l~~~Gv~--i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~--~p~~~~  292 (484)
T 3o0h_A          231 DYDLRQLLNDAMVAKGIS--IIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGR--VPNTTG  292 (484)
T ss_dssp             CHHHHHHHHHHHHHHTCE--EESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCE--EECCTT
T ss_pred             CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCC--CcCCCC
Confidence            357888888889888987  99999999999887778899989988999999999998  676553

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.79  E-value=0.019  Score=55.53  Aligned_cols=61  Identities=11%  Similarity=0.100  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc-EEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK-KKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~-~~~~d~vvvAtG~~~~p~~P  112 (396)
                      ..++.+++.+.+++.++.  ++++++|++|+.++++..|++.+|+ ++.+|.||+|+|.  .|+..
T Consensus       206 ~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~--~p~~~  267 (463)
T 2r9z_A          206 DPLLSATLAENMHAQGIE--THLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGR--APNTR  267 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCE--EESCT
T ss_pred             CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCC--CcCCC
Confidence            357888888999999987  9999999999987666888888888 7999999999999  77764

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=95.79  E-value=0.015  Score=56.91  Aligned_cols=61  Identities=11%  Similarity=0.023  Sum_probs=52.5

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      ..++.+++.+.+++.|++  ++++++|++|+.++++..|++.+|+++.+|.||+|+|.  .|+..
T Consensus       222 d~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~--~p~~~  282 (499)
T 1xdi_A          222 DADAALVLEESFAERGVR--LFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGS--VPNTS  282 (499)
T ss_dssp             SHHHHHHHHHHHHHTTCE--EETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCE--EECCS
T ss_pred             CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCC--CcCCC
Confidence            357888999999999988  99999999999876667888878888999999999999  77754

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=95.76  E-value=0.021  Score=55.27  Aligned_cols=62  Identities=21%  Similarity=0.189  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc-c--Cc--EEEcCEEEEcccCCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-N--GK--KKKYDFIAVCNGAQRVARYPN  113 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~-~--g~--~~~~d~vvvAtG~~~~p~~P~  113 (396)
                      .+++.+++.+.+++.++.  ++++++|++|+.+++.+.|++. +  |+  ++.+|.||+|+|.  .|+.+.
T Consensus       209 ~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~--~p~~~~  275 (464)
T 2eq6_A          209 DPETAALLRRALEKEGIR--VRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGR--KPRTEG  275 (464)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCE--EESCTT
T ss_pred             CHHHHHHHHHHHHhcCCE--EEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCc--ccCCCC
Confidence            467889999999999988  9999999999987777778775 5  76  7899999999998  777654

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=95.76  E-value=0.021  Score=53.72  Aligned_cols=60  Identities=15%  Similarity=0.312  Sum_probs=50.4

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEE-ccCc--EEEcCEEEEcccCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVEL-SNGK--KKKYDFIAVCNGAQRV  108 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~-~~g~--~~~~d~vvvAtG~~~~  108 (396)
                      ++.++.+.|.+.+...++.  |+++++|++++.+ ++.+.|++ .+|+  ++.+|.||.|+|.++.
T Consensus       101 ~~~~l~~~L~~~~~~~g~~--i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~  164 (394)
T 1k0i_A          101 GQTEVTRDLMEAREACGAT--TVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGI  164 (394)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCS
T ss_pred             chHHHHHHHHHHHHhcCCe--EEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence            5678888898888888876  9999999999886 45688887 6776  6899999999999764

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=95.72  E-value=0.016  Score=57.01  Aligned_cols=61  Identities=18%  Similarity=0.181  Sum_probs=51.8

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe----EEEEEccCc-EEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI----WEVELSNGK-KKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~----~~V~~~~g~-~~~~d~vvvAtG~~~~p~~P  112 (396)
                      ..++.+++.+.+++.|+.  ++++++|++|+.++++    +.|++++|+ ++.+|.||+|+|.  .|+..
T Consensus       254 ~~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~--~p~~~  319 (523)
T 1mo9_A          254 DNETRAYVLDRMKEQGME--IISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGE--QPRSA  319 (523)
T ss_dssp             SHHHHHHHHHHHHHTTCE--EESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCC--EECCH
T ss_pred             cHHHHHHHHHHHHhCCcE--EEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCC--ccCCc
Confidence            468889999999999988  9999999999986444    788888887 7899999999999  67653

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=95.71  E-value=0.0084  Score=58.66  Aligned_cols=62  Identities=15%  Similarity=0.177  Sum_probs=50.5

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe---CCeEEEEE--c-cC--cEEEcCEEEEcccCCCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVEL--S-NG--KKKKYDFIAVCNGAQRVA  109 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~---~~~~~V~~--~-~g--~~~~~d~vvvAtG~~~~p  109 (396)
                      .+..++.++|.+.+++.++.  ++++++|+++..+   ++.|.|++  . +|  .++.+|+||+|+|..+.+
T Consensus       163 ~~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~  232 (497)
T 2bry_A          163 ISIRQLQLLLLKVALLLGVE--IHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP  232 (497)
T ss_dssp             EEHHHHHHHHHHHHHHTTCE--EEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred             CCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence            34689999999999998887  9999999999874   35788887  3 55  358999999999995533

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=95.68  E-value=0.031  Score=53.81  Aligned_cols=60  Identities=12%  Similarity=-0.042  Sum_probs=49.6

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEc---cCc--EEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELS---NGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~---~g~--~~~~d~vvvAtG~~~  107 (396)
                      .++.++.+.|.+.+.+.++.  ++++++|+++..+++.+. |++.   +|+  ++.+|.||.|+|.++
T Consensus        97 i~r~~l~~~L~~~a~~~gv~--i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s  162 (453)
T 3atr_A           97 LNAPLYNQRVLKEAQDRGVE--IWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSR  162 (453)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred             EcHHHHHHHHHHHHHHcCCE--EEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence            46789999999999988887  999999999998776654 5553   565  689999999999965

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=95.65  E-value=0.022  Score=55.50  Aligned_cols=56  Identities=14%  Similarity=0.177  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEccCcEEEcCEEEEcccCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      ..+.+-|.+.++..|.+  |+++++|++|..++++++ |++++|+++.+|+||++++..
T Consensus       221 ~~l~~aL~~~~~~~Gg~--I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          221 GALVQGMIKLFQDLGGE--VVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC--
T ss_pred             cchHHHHHHHHHHhCCc--eeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHH
Confidence            57888899999999987  999999999999988877 888999999999999998873

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=95.64  E-value=0.026  Score=54.32  Aligned_cols=61  Identities=15%  Similarity=0.071  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPN  113 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~  113 (396)
                      ..++.+.+.+.+++.|+.  ++++++|++|+..+++..|+++++ ++.+|.||+|+|.  .|+..-
T Consensus       188 d~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~--~p~~~~  248 (452)
T 3oc4_A          188 DKEMVAEVQKSLEKQAVI--FHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNL--HPQLAY  248 (452)
T ss_dssp             CHHHHHHHHHHHHTTTEE--EEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCC--BCCCSS
T ss_pred             CHHHHHHHHHHHHHcCCE--EEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCC--CCChHH
Confidence            368889999999999987  899999999997766677888777 7899999999998  777653

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=95.62  E-value=0.019  Score=54.08  Aligned_cols=59  Identities=17%  Similarity=0.164  Sum_probs=49.7

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC-eEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED-IWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~-~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .....+.+.|.+.+++.++.  ++++++|+++..+++ .|.|++.+| ++.+|.||+|+|.++
T Consensus       171 ~~~~~~~~~l~~~~~~~g~~--i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          171 AKHDHVAWAFARKANEMGVD--IIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             CCHHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             CCHHHHHHHHHHHHHHCCCE--EEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence            34568999999999998887  999999999998744 478888877 589999999999854

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.57  E-value=0.022  Score=54.87  Aligned_cols=60  Identities=13%  Similarity=0.068  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      .++.+++.+.+++.+++  ++++++|++|+.++ +.+.|++.+|+++.+|.||+|+|.  .|+..
T Consensus       208 ~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~--~p~~~  268 (450)
T 1ges_A          208 PMISETLVEVMNAEGPQ--LHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGR--EPAND  268 (450)
T ss_dssp             HHHHHHHHHHHHHHSCE--EECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE--EESCT
T ss_pred             HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCC--CcCCC
Confidence            57888999999999987  99999999999864 347888888888999999999999  77765

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=95.55  E-value=0.029  Score=55.56  Aligned_cols=59  Identities=19%  Similarity=0.308  Sum_probs=50.5

Q ss_pred             CChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCe--EEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDI--WEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~--~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ..+.++.++|.+.++.. |+.  ++++ +|++|..++++  +.|++.+|+++.+|.||+|+|..+
T Consensus       191 ~~~~~l~~~L~~~~~~~~Gv~--i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S  252 (550)
T 2e4g_A          191 FDAHLVADFLRRFATEKLGVR--HVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRG  252 (550)
T ss_dssp             ECHHHHHHHHHHHHHHHSCCE--EEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred             EcHHHHHHHHHHHHHhcCCcE--EEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCch
Confidence            46789999999999998 987  8899 99999886443  667788888899999999999854

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=95.54  E-value=0.034  Score=54.51  Aligned_cols=60  Identities=17%  Similarity=0.101  Sum_probs=49.8

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe---EEEEEccCc--EEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI---WEVELSNGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~---~~V~~~~g~--~~~~d~vvvAtG~~~  107 (396)
                      .++..+.++|.+.+.+.++.  |+++++|++|..+++.   +++...+|+  ++.+|.||.|+|.++
T Consensus       108 v~r~~l~~~L~~~a~~~Gv~--i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S  172 (512)
T 3e1t_A          108 VERARFDDMLLRNSERKGVD--VRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRT  172 (512)
T ss_dssp             CCHHHHHHHHHHHHHHTTCE--EESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTC
T ss_pred             ecHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcch
Confidence            56889999999999998887  9999999999988664   344445574  689999999999965

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=95.54  E-value=0.029  Score=53.24  Aligned_cols=56  Identities=11%  Similarity=-0.009  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE-EEEccCcEEEcCEEEEcccCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE-VELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~-V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ..+.+-|.+.+++.|.+  |+++++|++|..++++|+ |+++ |+++.+|.||+|+|...
T Consensus       196 ~~l~~~l~~~~~~~G~~--i~~~~~V~~i~~~~~~~~gv~~~-g~~~~ad~VV~a~~~~~  252 (425)
T 3ka7_A          196 KGIIDALETVISANGGK--IHTGQEVSKILIENGKAAGIIAD-DRIHDADLVISNLGHAA  252 (425)
T ss_dssp             HHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEET-TEEEECSEEEECSCHHH
T ss_pred             HHHHHHHHHHHHHcCCE--EEECCceeEEEEECCEEEEEEEC-CEEEECCEEEECCCHHH
Confidence            45777778888888877  999999999999888887 6664 77799999999999853

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=95.50  E-value=0.025  Score=55.23  Aligned_cols=60  Identities=15%  Similarity=0.166  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      .++.+++.+.+++.|+.  ++++++|++|+.+++...|++.+|+++.+|.||+|+|.  .|+..
T Consensus       226 ~~~~~~~~~~l~~~GV~--v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~--~pn~~  285 (493)
T 1m6i_A          226 EYLSNWTMEKVRREGVK--VMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL--EPNVE  285 (493)
T ss_dssp             HHHHHHHHHHHHTTTCE--EECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE--EECCT
T ss_pred             HHHHHHHHHHHHhcCCE--EEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCC--CccHH
Confidence            57888889999999987  99999999998777777888888988999999999999  67653

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=95.47  E-value=0.035  Score=54.32  Aligned_cols=59  Identities=20%  Similarity=0.217  Sum_probs=50.3

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe--EEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI--WEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~--~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ..+..+.+.|.+.+...|+.  ++++ +|++|..++++  +.|++.+|+++.+|.||.|+|.++
T Consensus       170 ~~~~~l~~~L~~~a~~~gv~--~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S  230 (511)
T 2weu_A          170 FDADEVARYLSEYAIARGVR--HVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRG  230 (511)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred             EcHHHHHHHHHHHHHHCCCE--EEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcch
Confidence            46789999999999998886  8899 99999986443  678888887899999999999965

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.46  E-value=0.016  Score=55.96  Aligned_cols=36  Identities=19%  Similarity=0.262  Sum_probs=32.8

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      +++||+|+|||+|.+|.-.+..|.+.+.+|+++...
T Consensus         9 ~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A            9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            467999999999999999999999999999999764

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=95.42  E-value=0.032  Score=52.91  Aligned_cols=60  Identities=12%  Similarity=0.055  Sum_probs=49.5

Q ss_pred             CChHHHHHHHHHHHHH-cC-CCCceEeCcEEEEEEEeCCeEEEEEcc---C--cEEEcCEEEEcccCCCC
Q psy2343          46 PNHSMMLDYLRSYAKK-FD-VYNHSIFNTEVINLEQYEDIWEVELSN---G--KKKKYDFIAVCNGAQRV  108 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~-~~-l~~~i~~~t~V~~v~~~~~~~~V~~~~---g--~~~~~d~vvvAtG~~~~  108 (396)
                      .++.++.++|.+.+.. .+ +.  |+++++|++++. +++++|++.+   |  .++.+|.||.|+|.++.
T Consensus       104 i~r~~l~~~L~~~~~~~~g~~~--v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~  170 (410)
T 3c96_A          104 IHRGELQMILLAAVRERLGQQA--VRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADVLVGADGIHSA  170 (410)
T ss_dssp             EEHHHHHHHHHHHHHHHHCTTS--EEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESEEEECCCTTCH
T ss_pred             eeHHHHHHHHHHHHHhhCCCcE--EEECCEEEEEec-CCccEEEEecCCCCCceEEecCEEEECCCccch
Confidence            4678999999998876 45 34  999999999998 6778888765   7  46899999999999763

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=95.38  E-value=0.031  Score=55.30  Aligned_cols=57  Identities=14%  Similarity=0.246  Sum_probs=48.8

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc---C--cEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---G--KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~---g--~~~~~d~vvvAtG~~~  107 (396)
                      .++..+.++|.+.+++.     |+++++|++++.++++++|++.+   |  .++.+|+||.|+|.++
T Consensus       135 i~~~~l~~~L~~~a~~~-----v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S  196 (549)
T 2r0c_A          135 CPQHWLAPLLAEAVGER-----LRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASS  196 (549)
T ss_dssp             CCHHHHHHHHHHHHGGG-----EECSEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEEEECCCTTC
T ss_pred             cCHHHHHHHHHHHHHHh-----cccCcEEEEEEEeCCEEEEEEEECCCCCEEEEEeCEEEECCCCCc
Confidence            46788999999998875     89999999999988888888765   6  3589999999999976

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=95.37  E-value=0.027  Score=54.94  Aligned_cols=60  Identities=15%  Similarity=0.198  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      .++.+++.+.+++.|+.  ++++++|++|+.++ +.+.|++.+|+++.+|.||+|+|.  .|+..
T Consensus       231 ~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~--~p~~~  291 (490)
T 1fec_A          231 SELRKQLTEQLRANGIN--VRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR--VPRSQ  291 (490)
T ss_dssp             HHHHHHHHHHHHHTTEE--EEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE--EESCT
T ss_pred             HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCC--CcCcc
Confidence            57888899999999987  99999999999864 458888888888999999999999  77764

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=95.30  E-value=0.038  Score=54.54  Aligned_cols=59  Identities=19%  Similarity=0.388  Sum_probs=49.8

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC--eEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--IWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~--~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .++.++.++|.+.++..|+.  ++++ +|++|..+++  .+.|++.+|+++.+|.||.|+|.++
T Consensus       162 i~~~~l~~~L~~~a~~~gv~--~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s  222 (538)
T 2aqj_A          162 FDAHLVADFLKRWAVERGVN--RVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRG  222 (538)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGC
T ss_pred             EeHHHHHHHHHHHHHHCCCE--EEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCch
Confidence            35689999999999998886  8888 8999988643  3678888887799999999999965

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=95.28  E-value=0.041  Score=54.64  Aligned_cols=60  Identities=15%  Similarity=0.171  Sum_probs=48.1

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeE-EEEE--ccCc--EEEcCEEEEcccCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIW-EVEL--SNGK--KKKYDFIAVCNGAQRV  108 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~-~V~~--~~g~--~~~~d~vvvAtG~~~~  108 (396)
                      ++.++.+.|.+.+++.++.  |+++++|+++..++ ++. -|.+  .+|+  ++.+|.||+|||.++.
T Consensus       248 ~~~~l~~~L~~~~~~~gv~--i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          248 SGPEIIDTLRKAAKEQGID--TRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             HHHHHHHHHHHHHHHTTCC--EECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             CHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence            4788999999999999987  99999999998875 542 2444  3665  5789999999999653

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.27  E-value=0.034  Score=53.58  Aligned_cols=61  Identities=21%  Similarity=0.158  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc---cCcEEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---NGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~---~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      ..++.+++.+.+++.|+.  ++++++|++|+.+++...|++.   +++++.+|.||+|+|.  .|+.+
T Consensus       210 ~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~--~p~~~  273 (455)
T 1ebd_A          210 EKQMAAIIKKRLKKKGVE--VVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGR--RPNTD  273 (455)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCE--EESCS
T ss_pred             CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCC--CcccC
Confidence            467888999999999987  9999999999987766777664   4556899999999999  77754

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=95.25  E-value=0.032  Score=54.47  Aligned_cols=60  Identities=12%  Similarity=0.128  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      .++.+++.+.+++.|+.  ++++++|++|+.++ +...|++.+|+++.+|.||+|+|.  .|+..
T Consensus       235 ~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~--~p~~~  295 (495)
T 2wpf_A          235 ETIREEVTKQLTANGIE--IMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGR--IPRTN  295 (495)
T ss_dssp             HHHHHHHHHHHHHTTCE--EEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE--EECCG
T ss_pred             HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCC--ccccc
Confidence            57888899999999988  99999999998864 457888888888999999999998  77754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.18  E-value=0.05  Score=53.16  Aligned_cols=61  Identities=16%  Similarity=0.361  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeEEEEEccCcE-EEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVELSNGKK-KKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~~V~~~~g~~-~~~d~vvvAtG~~~~p~~P  112 (396)
                      ..++.+++.+..++.|++  ++++++|++|+.++ +...|++++|++ +.+|.||+|+|.  .|+..
T Consensus       216 d~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~--~p~~~  278 (500)
T 1onf_A          216 DESVINVLENDMKKNNIN--IVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGR--SPDTE  278 (500)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCB--CCTTT
T ss_pred             chhhHHHHHHHHHhCCCE--EEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCC--CcCCC
Confidence            367888999999999988  99999999999863 457888888887 899999999999  77764

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=95.14  E-value=0.021  Score=56.04  Aligned_cols=52  Identities=12%  Similarity=0.012  Sum_probs=42.6

Q ss_pred             HHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          54 YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        54 Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ..+..++..+..  |+++++|++|+.++++|+|++.+|+++.||+||+|++...
T Consensus       217 l~~~l~~~lg~~--i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  268 (520)
T 1s3e_A          217 VSERIMDLLGDR--VKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL  268 (520)
T ss_dssp             HHHHHHHHHGGG--EESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGG
T ss_pred             HHHHHHHHcCCc--EEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHH
Confidence            344455555654  9999999999988888999998998899999999999854

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=95.13  E-value=0.027  Score=53.51  Aligned_cols=55  Identities=13%  Similarity=0.131  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ..+.+-|.+.++..|..  |+++++|++|..++++| | +.+|+++.+|+||+|+|...
T Consensus       189 ~~l~~~l~~~~~~~G~~--i~~~~~V~~i~~~~~~v-V-~~~g~~~~ad~Vv~a~~~~~  243 (421)
T 3nrn_A          189 KAVIDELERIIMENKGK--ILTRKEVVEINIEEKKV-Y-TRDNEEYSFDVAISNVGVRE  243 (421)
T ss_dssp             HHHHHHHHHHHHTTTCE--EESSCCEEEEETTTTEE-E-ETTCCEEECSEEEECSCHHH
T ss_pred             HHHHHHHHHHHHHCCCE--EEcCCeEEEEEEECCEE-E-EeCCcEEEeCEEEECCCHHH
Confidence            46677777777888876  99999999999888888 6 45677799999999999843

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=95.12  E-value=0.052  Score=53.96  Aligned_cols=59  Identities=15%  Similarity=0.068  Sum_probs=47.2

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeE-EEEEc--cCc--EEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIW-EVELS--NGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~-~V~~~--~g~--~~~~d~vvvAtG~~~  107 (396)
                      .+.++.+.|.+.+++.++.  |+++++|+++..++ ++. -|.+.  +|+  ++.+|.||+|||.++
T Consensus       253 ~g~~l~~~L~~~~~~~gv~--i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          253 VGAHVVQVLYDNAVKRNID--LRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             HHHHHHHHHHHHHHHTTCE--EESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             CHHHHHHHHHHHHHhcCCE--EEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            4578999999999999987  99999999998865 532 24443  565  578999999999965

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=95.10  E-value=0.039  Score=53.39  Aligned_cols=61  Identities=16%  Similarity=0.103  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHH-HHcCCCCceEeCcEEEEEEEeCCeEEEEEc--cC--cEEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYA-KKFDVYNHSIFNTEVINLEQYEDIWEVELS--NG--KKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~-~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~--~g--~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      .+++.+++.+.+ ++.+++  ++++++|++|+.+++.+.|++.  +|  +++.+|.||+|+|.  .|+..
T Consensus       214 d~~~~~~l~~~l~~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~--~p~~~  279 (468)
T 2qae_A          214 DEDVTNALVGALAKNEKMK--FMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGR--RPFTG  279 (468)
T ss_dssp             CHHHHHHHHHHHHHHTCCE--EECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCE--EECCT
T ss_pred             CHHHHHHHHHHHhhcCCcE--EEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCc--ccCCC
Confidence            367888899988 888987  9999999999987666777765  56  56899999999999  77754

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=95.10  E-value=0.032  Score=53.50  Aligned_cols=59  Identities=24%  Similarity=0.258  Sum_probs=48.7

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEE---------------eCCe-EEEEEccCcEE--EcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ---------------YEDI-WEVELSNGKKK--KYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~---------------~~~~-~~V~~~~g~~~--~~d~vvvAtG~~~  107 (396)
                      ....++.+.|.+.+++.|+.  ++++++|++|..               ++++ |.|.+.+| ++  .+|.||+|+|.++
T Consensus       178 ~~~~~l~~~L~~~~~~~Gv~--i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s  254 (448)
T 3axb_A          178 LDAEKVVDYYYRRASGAGVE--FIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS  254 (448)
T ss_dssp             CCHHHHHHHHHHHHHHTTCE--EEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH
T ss_pred             EcHHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH
Confidence            35678999999999999987  899999999987               4443 67888777 47  9999999999864

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=95.04  E-value=0.035  Score=53.88  Aligned_cols=59  Identities=7%  Similarity=0.090  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe--EEEEEccC-cEEEcCEEEEcccCCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI--WEVELSNG-KKKKYDFIAVCNGAQRVARY  111 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~--~~V~~~~g-~~~~~d~vvvAtG~~~~p~~  111 (396)
                      +++.+.+.+.+++.|+.  ++++++|++|+.++++  ..|++++| +++.+|.||+|+|.  .|+.
T Consensus       226 ~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~--~p~~  287 (479)
T 2hqm_A          226 ECIQNTITDHYVKEGIN--VHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGR--KSHL  287 (479)
T ss_dssp             HHHHHHHHHHHHHHTCE--EECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCE--EECC
T ss_pred             HHHHHHHHHHHHhCCeE--EEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCC--CCcc
Confidence            67888899999999988  9999999999876443  67888888 77999999999998  7776

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.03  E-value=0.013  Score=51.30  Aligned_cols=32  Identities=16%  Similarity=0.249  Sum_probs=30.2

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            59999999999999999999999999999865

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=95.00  E-value=0.045  Score=54.68  Aligned_cols=60  Identities=15%  Similarity=0.124  Sum_probs=51.9

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEc-cC--cEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELS-NG--KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~-~g--~~~~~d~vvvAtG~~~  107 (396)
                      ..+..+.++|.+.++..|+.  ++++++|++|..+ ++.+.|++. +|  .++.+|.||.|+|..+
T Consensus       125 v~r~~l~~~L~~~a~~~Gv~--i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          125 VKREEFDKLLLDEARSRGIT--VHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             CCHHHHHHHHHHHHHHTTCE--EETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred             EcHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence            46789999999999998887  8999999999986 667889887 56  4689999999999965

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=94.99  E-value=0.039  Score=53.50  Aligned_cols=61  Identities=13%  Similarity=0.171  Sum_probs=50.5

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEE--eCCeEEEEEc-----cCcEEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ--YEDIWEVELS-----NGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~--~~~~~~V~~~-----~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      ..++.+++.+.+++.+++  ++++++|++|+.  +++.+.|++.     +++++.+|.||+|+|.  .|+..
T Consensus       223 ~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~--~p~~~  290 (478)
T 1v59_A          223 DGEVAKATQKFLKKQGLD--FKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGR--RPYIA  290 (478)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCE--EECCT
T ss_pred             CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCC--CcCCC
Confidence            367889999999999988  999999999998  5566777765     3456899999999999  77764

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=94.96  E-value=0.032  Score=55.54  Aligned_cols=34  Identities=21%  Similarity=0.144  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+|+|||+|.+|+=+|..|++.+.+|+++.|.+.
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~   83 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVE   83 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            4799999999999999999999999999998763

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=94.92  E-value=0.011  Score=56.09  Aligned_cols=58  Identities=16%  Similarity=0.004  Sum_probs=42.8

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEE---------EEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVI---------NLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~---------~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ....+.+.|.+.++..++.  ++++++|+         ++..+++.|.|++.++ ++.+|.||+|+|.++
T Consensus       170 ~~~~l~~~L~~~~~~~Gv~--i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          170 RPGSLALLAAQQAIGQGAG--LLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAG  236 (405)
T ss_dssp             CHHHHHHHHHHHHHTTTCE--EECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGH
T ss_pred             cHHHHHHHHHHHHHHCCCE--EEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccH
Confidence            4567899999999888876  88999999         8877666777777666 689999999999864

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=94.88  E-value=0.022  Score=46.05  Aligned_cols=46  Identities=22%  Similarity=0.269  Sum_probs=33.0

Q ss_pred             ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      |.+....+....+++|+|+|+|..|.-+|..|...+.+|+++.|++
T Consensus         7 ~~~~~~~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A            7 HHHHHHMSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             ----------CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             hhhhhhhhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3333444556678999999999999999999999888999998865

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=94.87  E-value=0.059  Score=52.97  Aligned_cols=59  Identities=14%  Similarity=0.134  Sum_probs=48.8

Q ss_pred             CChHHHHHHHHHHHHH-cCCCCceEeCcEEEEEEEeCCe--EEEEEccCcEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDI--WEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~-~~l~~~i~~~t~V~~v~~~~~~--~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ..+..+.++|.+.++. .|+.  ++++ +|++|+.++++  ..|++.+|.++.+|.||.|+|.++
T Consensus       172 ~~r~~l~~~L~~~a~~~~Gv~--i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S  233 (526)
T 2pyx_A          172 LNAAKFSQLLTEHCTQKLGVT--HIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKS  233 (526)
T ss_dssp             ECHHHHHHHHHHHHHHTSCCE--EEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGC
T ss_pred             EcHHHHHHHHHHHHHhcCCCE--EEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcch
Confidence            4678999999999998 8886  8889 69999886443  367777777799999999999965

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=94.86  E-value=0.065  Score=52.33  Aligned_cols=59  Identities=12%  Similarity=0.092  Sum_probs=50.0

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc---cCc--EEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---NGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~---~g~--~~~~d~vvvAtG~~~  107 (396)
                      ....+...|...+.+.|+.  ++++++|+++.++++.|.|++.   +|+  ++.+|.||+|+|.++
T Consensus       147 ~~~~l~~~l~~~a~~~Gv~--i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          147 DDARLVLANAQMVVRKGGE--VLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             cHHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            4577888888888888987  8899999999988888988884   464  589999999999964

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=94.85  E-value=0.052  Score=52.18  Aligned_cols=61  Identities=20%  Similarity=0.243  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      ..++.+++.+.+++.|+.  ++++++|++|+.++++......+|+++.+|.||+|+|.  .|+..
T Consensus       190 ~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~--~p~~~  250 (452)
T 2cdu_A          190 DKEFTDILAKDYEAHGVN--LVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGF--RPNTE  250 (452)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCE--EECCG
T ss_pred             hhhHHHHHHHHHHHCCCE--EEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCC--CCCHH
Confidence            367889999999999998  99999999998766655423336778999999999999  77754

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=94.78  E-value=0.054  Score=52.30  Aligned_cols=62  Identities=15%  Similarity=0.120  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc-cC--cEEEcCEEEEcccCCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NG--KKKKYDFIAVCNGAQRVARYPN  113 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~-~g--~~~~~d~vvvAtG~~~~p~~P~  113 (396)
                      ..++.+++.+..++.|++  ++++++|++|+.+++...|++. +|  +++.+|.||+|+|.  .|+...
T Consensus       211 ~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~--~p~~~~  275 (464)
T 2a8x_A          211 DADVSKEIEKQFKKLGVT--ILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGF--APNVEG  275 (464)
T ss_dssp             CHHHHHHHHHHHHHHTCE--EECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCE--EECCSS
T ss_pred             CHHHHHHHHHHHHHcCCE--EEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCC--CccCCC
Confidence            367888999999999988  9999999999987656667665 56  56899999999999  777643

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=94.78  E-value=0.048  Score=52.78  Aligned_cols=61  Identities=16%  Similarity=0.152  Sum_probs=50.3

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEE-----ccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVEL-----SNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~-----~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      .+++.+++.+.+++.|+.  ++++++|++|+.+++. ..|+.     .+++++.+|.||+|+|.  .|+..
T Consensus       219 ~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~--~p~~~  285 (474)
T 1zmd_A          219 DMEISKNFQRILQKQGFK--FKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGR--RPFTK  285 (474)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCE--EECCT
T ss_pred             CHHHHHHHHHHHHHCCCE--EEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCC--CcCCC
Confidence            467889999999999988  9999999999987554 77764     34567899999999999  77754

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=94.75  E-value=0.057  Score=52.26  Aligned_cols=61  Identities=13%  Similarity=0.129  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC---cEEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g---~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      ..++.+.+.+..++.++.  ++++++|++++.+++...|+..++   +++.+|.||+|+|.  .|+..
T Consensus       220 ~~~~~~~l~~~l~~~Gv~--v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~--~p~~~  283 (476)
T 3lad_A          220 DEQVAKEAQKILTKQGLK--ILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGR--RPVTT  283 (476)
T ss_dssp             CHHHHHHHHHHHHHTTEE--EEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCE--EECCT
T ss_pred             CHHHHHHHHHHHHhCCCE--EEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCC--cccCC
Confidence            467888888888888987  899999999998777777777654   56899999999998  77764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.73  E-value=0.019  Score=51.14  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      +++||+|+|||+|.+|.-.+..|.+.+.+|+++...
T Consensus        10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             EcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            467999999999999999999999999999999865

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=94.73  E-value=0.045  Score=52.62  Aligned_cols=53  Identities=19%  Similarity=0.264  Sum_probs=42.5

Q ss_pred             HHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343          53 DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        53 ~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      ...+..++...- ..|+++++|++|+.++++|.|++.+|+++.||+||+|+...
T Consensus       236 ~l~~~l~~~l~~-~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~  288 (470)
T 3i6d_A          236 TLVEEIEKQLKL-TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHK  288 (470)
T ss_dssp             HHHHHHHHTCCS-EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHH
T ss_pred             HHHHHHHHhcCC-CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHH
Confidence            444555555431 35999999999999878899999999889999999999874

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=94.70  E-value=0.043  Score=53.00  Aligned_cols=61  Identities=8%  Similarity=0.046  Sum_probs=51.3

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeEEEE-EccCcEEEcCEEEEcccCCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVE-LSNGKKKKYDFIAVCNGAQRVARYPN  113 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~~V~-~~~g~~~~~d~vvvAtG~~~~p~~P~  113 (396)
                      ..++.+.+.+.+++.|++  ++++++|++|+.++ +...|+ +++|+ +.+|.||+|+|.  .|+...
T Consensus       210 ~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~--~p~~~~  272 (463)
T 4dna_A          210 DQDMRRGLHAAMEEKGIR--ILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGR--MPNTNG  272 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCE--EESCTT
T ss_pred             CHHHHHHHHHHHHHCCCE--EECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCc--ccCCCC
Confidence            367888999999999988  99999999999873 447788 88887 999999999998  777653

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=94.69  E-value=0.073  Score=51.76  Aligned_cols=62  Identities=11%  Similarity=0.097  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc---C--cEEEcCEEEEcccCCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN---G--KKKKYDFIAVCNGAQRVARYPN  113 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~---g--~~~~~d~vvvAtG~~~~p~~P~  113 (396)
                      ..++.+.+.+.+++.++.  ++++++|++|+.+++...|++.+   |  +++.+|.||+|+|.  .|+...
T Consensus       238 d~~~~~~l~~~l~~~gV~--v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~--~p~~~~  304 (491)
T 3urh_A          238 DGEVAKQLQRMLTKQGID--FKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGR--KPSTDG  304 (491)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCC--EECCTT
T ss_pred             CHHHHHHHHHHHHhCCCE--EEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCC--ccCCCc
Confidence            467888888889998987  89999999999887777777763   4  46899999999998  777653

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=94.67  E-value=0.06  Score=52.00  Aligned_cols=60  Identities=7%  Similarity=0.074  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      ..++.+.+.+.+++.|+.  ++++++|++|+.+++.+.|+++ +.++.+|.||+|+|.  .|+..
T Consensus       215 ~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~--~p~~~  274 (467)
T 1zk7_A          215 DPAIGEAVTAAFRAEGIE--VLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGR--TPNTR  274 (467)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCE--EESCT
T ss_pred             CHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCC--CcCCC
Confidence            457889999999999987  9999999999987777888876 446899999999999  67653

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=94.59  E-value=0.032  Score=54.22  Aligned_cols=61  Identities=16%  Similarity=0.151  Sum_probs=51.0

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc----CcEEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN----GKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~----g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      ..++.+++.+..++.++.  ++++++|.+|+.+++...|++.+    |+++.+|.||+|+|.  .|+..
T Consensus       225 ~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~--~p~~~  289 (482)
T 1ojt_A          225 DRDLVKVWQKQNEYRFDN--IMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR--APNGK  289 (482)
T ss_dssp             CHHHHHHHHHHHGGGEEE--EECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE--EECGG
T ss_pred             CHHHHHHHHHHHHhcCCE--EEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCC--CcCCC
Confidence            467888888888888887  89999999999877777787766    667889999999999  77653

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=94.57  E-value=0.094  Score=52.13  Aligned_cols=59  Identities=15%  Similarity=0.046  Sum_probs=46.3

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-Ce-EEEEEc--cCc--EEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DI-WEVELS--NGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~-~~V~~~--~g~--~~~~d~vvvAtG~~~  107 (396)
                      .+.++.+.|.+.+++.+++  |+++++|+++..++ ++ +-|.+.  +|+  ++.+|.||+|||.++
T Consensus       253 ~g~~l~~~L~~~~~~~gv~--i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~  317 (572)
T 1d4d_A          253 VGAHVAQVLWDNAVKRGTD--IRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  317 (572)
T ss_dssp             HHHHHHHHHHHHHHHTTCE--EESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             CHHHHHHHHHHHHHHcCCe--EEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCc
Confidence            3678999999999999987  99999999997764 43 334443  564  478999999999954

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=94.57  E-value=0.015  Score=56.76  Aligned_cols=33  Identities=27%  Similarity=0.338  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      |+|+|||+|.+|.-+|..|++.+.+|+++.+++
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~   34 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRD   34 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCC
Confidence            789999999999999999999999999999875

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.55  E-value=0.055  Score=52.31  Aligned_cols=61  Identities=13%  Similarity=0.146  Sum_probs=50.3

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc---cC--cEEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---NG--KKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~---~g--~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      .+++.+++.+.+++.++.  ++++++|.+|+.+++...|++.   +|  +++.+|.||+|+|.  .|+..
T Consensus       217 ~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~--~p~~~  282 (470)
T 1dxl_A          217 DAEIRKQFQRSLEKQGMK--FKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGR--TPFTS  282 (470)
T ss_dssp             CHHHHHHHHHHHHHSSCC--EECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCE--EECCT
T ss_pred             cHHHHHHHHHHHHHcCCE--EEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCC--CcCCC
Confidence            468889999999999998  9999999999986655667664   44  56899999999999  77654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=94.42  E-value=0.081  Score=52.17  Aligned_cols=61  Identities=16%  Similarity=0.114  Sum_probs=54.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      -+++.+.++...++.++.  ++++++|.+++..++...|.+.++.++.+|.|++|+|.  +|+.-
T Consensus       262 D~ei~~~l~~~l~~~gi~--~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR--~Pnt~  322 (542)
T 4b1b_A          262 DQQCAVKVKLYMEEQGVM--FKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGR--KGDID  322 (542)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE--EESCG
T ss_pred             chhHHHHHHHHHHhhcce--eecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccc--cCCcc
Confidence            468899999999999987  89999999999998888899988888899999999998  88765

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=94.38  E-value=0.06  Score=51.12  Aligned_cols=53  Identities=4%  Similarity=0.097  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343          51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      +.++.+..++.++.  .|+++++|++|+.+++++.|++.+|+ +.||+||+|++..
T Consensus       205 ~~~l~~~l~~~l~~--~v~~~~~V~~i~~~~~~v~v~~~~g~-~~ad~Vv~a~~~~  257 (424)
T 2b9w_A          205 TQAMFEHLNATLEH--PAERNVDITRITREDGKVHIHTTDWD-RESDVLVLTVPLE  257 (424)
T ss_dssp             HHHHHHHHHHHSSS--CCBCSCCEEEEECCTTCEEEEESSCE-EEESEEEECSCHH
T ss_pred             HHHHHHHHHHhhcc--eEEcCCEEEEEEEECCEEEEEECCCe-EEcCEEEECCCHH
Confidence            45556666666654  48999999999988778999888876 8999999999984

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=94.31  E-value=0.048  Score=52.69  Aligned_cols=54  Identities=6%  Similarity=0.203  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343          51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      +..+.+..++...- ..|+++++|++|++++++|+|++.+| ++.||+||+|++..
T Consensus       235 ~~~l~~~l~~~l~~-~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~  288 (475)
T 3lov_A          235 LESLIERLEEVLER-SEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHP  288 (475)
T ss_dssp             HHHHHHHHHHHCSS-CEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHH
T ss_pred             HHHHHHHHHhhccC-CEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHH
Confidence            44456666666542 35999999999999888999999888 68999999999984

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=94.20  E-value=0.042  Score=52.75  Aligned_cols=62  Identities=13%  Similarity=0.058  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNY  114 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~  114 (396)
                      ..++.+++.+.+++.|+.  ++++++|++|+.+++.+.|.+ ++.++.+|.||+|+|.  .|+.+-+
T Consensus       190 ~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~--~p~~~~~  251 (447)
T 1nhp_A          190 DKEFTDVLTEEMEANNIT--IATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGV--RPNTAWL  251 (447)
T ss_dssp             CHHHHHHHHHHHHTTTEE--EEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCE--EESCGGG
T ss_pred             CHHHHHHHHHHHHhCCCE--EEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCC--CCChHHH
Confidence            468889999999999987  899999999987533345666 4567899999999998  7776533

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.17  E-value=0.11  Score=47.33  Aligned_cols=45  Identities=20%  Similarity=0.256  Sum_probs=29.4

Q ss_pred             ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      |.+.......+..++|+|||+|..|.=+|..|++.+.+|+++ +++
T Consensus         7 ~~~~~~~~~~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A            7 HHHHHHENLYFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             -------------CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             cccccchhhhccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            333344445667789999999999999999999988899998 654

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=94.12  E-value=0.095  Score=54.62  Aligned_cols=58  Identities=19%  Similarity=0.158  Sum_probs=49.1

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE-EEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~-~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ....+.+.|.+.+++.|+.  |+++++|++|+.+++++ .|.+.+| ++.+|.||+|+|.++
T Consensus       149 ~p~~l~~~L~~~a~~~Gv~--i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          149 SAARAVQLLIKRTESAGVT--YRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             cHHHHHHHHHHHHHHcCCE--EECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch
Confidence            4568889999999998987  88999999999876664 5777777 589999999999964

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=94.09  E-value=0.12  Score=52.12  Aligned_cols=62  Identities=15%  Similarity=0.224  Sum_probs=50.1

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC----eEEEEEc------cC--cEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED----IWEVELS------NG--KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~----~~~V~~~------~g--~~~~~d~vvvAtG~~~  107 (396)
                      .++..+.++|.+.+.+++..-.|+++++|++++.+++    .+.|+++      +|  .++.+|+||.|+|.++
T Consensus       138 i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S  211 (639)
T 2dkh_A          138 LNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARS  211 (639)
T ss_dssp             CCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTC
T ss_pred             eCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcch
Confidence            4678999999999999876223999999999998642    5888765      35  4589999999999976

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=94.01  E-value=0.048  Score=52.64  Aligned_cols=55  Identities=18%  Similarity=0.182  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEccCcEEEcCEEEEcccCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      ..+.+.|.+.+...|..  |+++++|++|++++++ |.|++. +.++.||+||+|++..
T Consensus       234 ~~l~~~l~~~l~~~g~~--i~~~~~V~~i~~~~~~~~~v~~~-~~~~~ad~vv~a~p~~  289 (477)
T 3nks_A          234 EMLPQALETHLTSRGVS--VLRGQPVCGLSLQAEGRWKVSLR-DSSLEADHVISAIPAS  289 (477)
T ss_dssp             THHHHHHHHHHHHTTCE--EECSCCCCEEEECGGGCEEEECS-SCEEEESEEEECSCHH
T ss_pred             HHHHHHHHHHHHhcCCE--EEeCCEEEEEEEcCCceEEEEEC-CeEEEcCEEEECCCHH
Confidence            36777888888777876  9999999999987555 999774 4468999999999874

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=93.95  E-value=0.061  Score=52.02  Aligned_cols=40  Identities=13%  Similarity=0.079  Sum_probs=36.5

Q ss_pred             ceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343          67 HSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        67 ~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      .|+++++|++|+..+++++|++.+|+++.+|+||+|++..
T Consensus       230 ~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~  269 (472)
T 1b37_A          230 RLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLG  269 (472)
T ss_dssp             TEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHH
T ss_pred             EEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHH
Confidence            5999999999999888899999999889999999999973

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=93.93  E-value=0.097  Score=50.73  Aligned_cols=52  Identities=15%  Similarity=0.295  Sum_probs=40.4

Q ss_pred             HHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC---cEEEcCEEEEcccCC
Q psy2343          54 YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNGAQ  106 (396)
Q Consensus        54 Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g---~~~~~d~vvvAtG~~  106 (396)
                      ..+..++..+- ..|+++++|++|++.+++|+|++.+|   +++.||+||+|+...
T Consensus       241 l~~~l~~~l~~-~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~  295 (489)
T 2jae_A          241 IYYAFQDRIGT-DNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPH  295 (489)
T ss_dssp             HHHHHHHHHCG-GGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHH
T ss_pred             HHHHHHHhcCC-CeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHH
Confidence            34444444431 34999999999999888999998876   568999999999873

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=93.92  E-value=0.14  Score=50.95  Aligned_cols=60  Identities=8%  Similarity=0.075  Sum_probs=49.0

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeE-EEEEc------cC---------cEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIW-EVELS------NG---------KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~-~V~~~------~g---------~~~~~d~vvvAtG~~~  107 (396)
                      .++.++.++|.+.++..++.  |+++++|+++..++ +.. .|++.      +|         .++.+|.||+|+|.++
T Consensus       141 v~r~~l~~~L~~~a~~~Gv~--i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S  217 (584)
T 2gmh_A          141 VRLGHLVSWMGEQAEALGVE--VYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHG  217 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTTCE--EETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTC
T ss_pred             EeHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCc
Confidence            46789999999999999887  99999999998874 433 36665      23         5689999999999965

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=93.91  E-value=0.029  Score=53.66  Aligned_cols=34  Identities=32%  Similarity=0.447  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3689999999999999999999999999999875

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=93.85  E-value=0.052  Score=52.46  Aligned_cols=51  Identities=10%  Similarity=0.165  Sum_probs=38.5

Q ss_pred             HHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE---ccCcEEEcCEEEEcccCC
Q psy2343          54 YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL---SNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        54 Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~---~~g~~~~~d~vvvAtG~~  106 (396)
                      ..+..++..+.  .|+++++|++|+.++++|.|++   .+|+++.||+||+|++..
T Consensus       240 l~~~l~~~lg~--~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~  293 (478)
T 2ivd_A          240 LIDALAASLGD--AAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAH  293 (478)
T ss_dssp             HHHHHHHHHGG--GEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHH
T ss_pred             HHHHHHHHhhh--hEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHH
Confidence            33444444443  4999999999998877799998   677779999999999984

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=93.83  E-value=0.13  Score=49.85  Aligned_cols=61  Identities=13%  Similarity=0.119  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEccCc-----EEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGK-----KKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~-----~~~~d~vvvAtG~~~~p~~P  112 (396)
                      ..++.+++.+.+++.++.  ++++++|.+|+.+ ++...|++.++.     ++.+|.||+|+|.  .|+..
T Consensus       226 d~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~--~p~~~  292 (483)
T 3dgh_A          226 DQQMAELVAASMEERGIP--FLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGR--KGLVD  292 (483)
T ss_dssp             CHHHHHHHHHHHHHTTCC--EEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCE--EECCG
T ss_pred             CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccc--ccCcC
Confidence            467888999999999998  9999999999986 445677776543     6899999999998  77654

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=93.71  E-value=0.066  Score=51.32  Aligned_cols=50  Identities=8%  Similarity=-0.054  Sum_probs=39.4

Q ss_pred             HHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEccCcEEEcCEEEEcccCCC
Q psy2343          55 LRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        55 l~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .+..++..+.  .|+++++|++|+.++++ |.|++ ++.++.+|+||+|++...
T Consensus       218 ~~~l~~~lg~--~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~~  268 (453)
T 2yg5_A          218 SIRMAEALGD--DVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPNL  268 (453)
T ss_dssp             HHHHHHHHGG--GEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGGG
T ss_pred             HHHHHHhcCC--cEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHHH
Confidence            3344555554  49999999999988777 88876 666789999999999853

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=93.59  E-value=0.15  Score=49.74  Aligned_cols=56  Identities=18%  Similarity=0.186  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeE-EEEEc-cCc--EEEcC-EEEEcccCCC
Q psy2343          50 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIW-EVELS-NGK--KKKYD-FIAVCNGAQR  107 (396)
Q Consensus        50 ~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~-~V~~~-~g~--~~~~d-~vvvAtG~~~  107 (396)
                      .+.+.|.+.+++.+++  |+++++|+++..+ +++. -|.+. +++  ++.+| .||+|||.++
T Consensus       203 ~l~~~L~~~~~~~Gv~--i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVR--AEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCE--EECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCE--EEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            8999999999999987  9999999999887 4443 24443 333  47895 9999999975

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=93.58  E-value=0.11  Score=46.20  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++.||+|+|||.|. .|.-+|..|+..+..|++++|+.
T Consensus       157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t  194 (285)
T 3p2o_A          157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT  194 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc
Confidence            57899999999776 69999999999888899998753

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=93.54  E-value=0.1  Score=50.62  Aligned_cols=60  Identities=22%  Similarity=0.223  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      ..++.+++.+.+++.|+.  ++++++|++|+.+++.+.|.++ +.++.+|.||+|+|.  .|+.+
T Consensus       226 ~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~v~~v~~~-~~~i~~D~vi~a~G~--~p~~~  285 (480)
T 3cgb_A          226 DGDMAEYIYKEADKHHIE--ILTNENVKAFKGNERVEAVETD-KGTYKADLVLVSVGV--KPNTD  285 (480)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSBEEEEEET-TEEEECSEEEECSCE--EESCG
T ss_pred             CHHHHHHHHHHHHHcCcE--EEcCCEEEEEEcCCcEEEEEEC-CCEEEcCEEEECcCC--CcChH
Confidence            467888999999999987  8999999999875444556664 446899999999998  66654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=93.48  E-value=0.14  Score=49.81  Aligned_cols=61  Identities=20%  Similarity=0.230  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc--cC--cEEEcCEEEEcccCCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS--NG--KKKKYDFIAVCNGAQRVARYPN  113 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~--~g--~~~~~d~vvvAtG~~~~p~~P~  113 (396)
                      ..++.+.+.+..+.. +.  ++++++|++|+.++++..|+..  +|  .++.+|.||+|+|.  .|+...
T Consensus       214 d~~~~~~l~~~l~~~-V~--i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~--~p~~~~  278 (492)
T 3ic9_A          214 DEEMKRYAEKTFNEE-FY--FDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGR--KANVDK  278 (492)
T ss_dssp             CHHHHHHHHHHHHTT-SE--EETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCC--EESCSS
T ss_pred             CHHHHHHHHHHHhhC-cE--EEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCC--ccCCCC
Confidence            357888888887765 66  8899999999987777777775  56  56899999999999  777654

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=93.43  E-value=0.11  Score=49.63  Aligned_cols=56  Identities=7%  Similarity=-0.054  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      .++.+-|.+.++..|..  |+++++|++|..+++++.+...+|+++.+|+||+|+|..
T Consensus       234 ~~l~~~l~~~~~~~G~~--i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~  289 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGT--YMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYV  289 (433)
T ss_dssp             THHHHHHHHHHHHHTCC--CBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCE--EECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCC
Confidence            57888888888888877  999999999998877766444577789999999999984

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=93.42  E-value=0.15  Score=45.72  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++.||+|+|||.|. .|.-+|..|...+..|++++|+.
T Consensus       162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T  199 (300)
T 4a26_A          162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT  199 (300)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC
Confidence            57899999999776 79999999999888999998753

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=93.32  E-value=0.17  Score=50.12  Aligned_cols=59  Identities=7%  Similarity=-0.100  Sum_probs=47.8

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEcc---C--cEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSN---G--KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~~---g--~~~~~d~vvvAtG~~~  107 (396)
                      ....+...|...+...|..  |+++++|+++.+++++ |.|++.+   |  .++.+|.||+|+|.++
T Consensus       168 d~~~l~~~L~~~a~~~G~~--i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          168 DDARLTLEIMKEAVARGAV--ALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             cHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            4567888888888889987  9999999999998665 5677754   3  3588999999999864

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=93.16  E-value=0.11  Score=50.58  Aligned_cols=60  Identities=8%  Similarity=0.126  Sum_probs=47.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      ..++.+++.+.+++.|+.  ++++++|++|+.+++...|.+ +++++.+|.||+|+|.  .|+.+
T Consensus       235 ~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~--~p~~~  294 (490)
T 2bc0_A          235 DRDLTDLMAKNMEEHGIQ--LAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGF--RPNTT  294 (490)
T ss_dssp             CHHHHHHHHHHHHTTTCE--EEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCE--EECCG
T ss_pred             HHHHHHHHHHHHHhCCeE--EEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCC--CcChH
Confidence            367888999999999988  999999999986332223555 6677999999999998  77754

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=93.11  E-value=0.072  Score=50.01  Aligned_cols=34  Identities=32%  Similarity=0.243  Sum_probs=31.4

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      ++|+|||+|..|++.|..+++.+.+|.++.+++.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            4799999999999999999999999999998763

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=92.99  E-value=0.059  Score=50.23  Aligned_cols=33  Identities=33%  Similarity=0.337  Sum_probs=30.8

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .|+|||||.+|+=+|..|++.+.+|+++.|++.
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~   38 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE   38 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            599999999999999999999999999998763

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=92.88  E-value=0.21  Score=48.29  Aligned_cols=56  Identities=9%  Similarity=0.054  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEE-eCC-eEEEEEccCcEEEcCEEEEcccCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQ-YED-IWEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~-~~~-~~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      .++.+-|.+.++..|..  |+++++|++|.. +++ .+.|++.+|+++.+|+||+|.|..
T Consensus       256 ~~L~~aL~r~~~~~Gg~--i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGT--FMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--C--EESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCE--EEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            57888999999999987  999999999998 444 477888888889999999999973

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=92.78  E-value=0.38  Score=42.93  Aligned_cols=57  Identities=9%  Similarity=-0.033  Sum_probs=42.0

Q ss_pred             ChHHHHHHHHHHHHH-cCCCCceEeCcEEEEEEEeCCeE-EEEEc---------cC-----cEEEcCEEEEcccC
Q psy2343          47 NHSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQYEDIW-EVELS---------NG-----KKKKYDFIAVCNGA  105 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~-~~l~~~i~~~t~V~~v~~~~~~~-~V~~~---------~g-----~~~~~d~vvvAtG~  105 (396)
                      +..++...|.+.+.+ .++.  ++++++|+++..++++. -|.+.         ++     .++.+|.||+|||.
T Consensus       117 ~~~~~~~~l~~~~~~~~gv~--i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~  189 (284)
T 1rp0_A          117 HAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGH  189 (284)
T ss_dssp             CHHHHHHHHHHHHHTSTTEE--EEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCS
T ss_pred             CHHHHHHHHHHHHHhcCCCE--EEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCC
Confidence            466777777777755 5776  89999999999876543 34432         22     46899999999998

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=92.75  E-value=0.066  Score=50.80  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA   33 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            479999999999999999999999999999864

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=92.45  E-value=0.072  Score=50.52  Aligned_cols=33  Identities=27%  Similarity=0.240  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLP   33 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCC
Confidence            479999999999999999999999999999864

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=92.44  E-value=0.069  Score=49.78  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|++.+.+|+++.+..
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~   50 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   50 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            479999999999999999999999999999864

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=92.32  E-value=0.088  Score=49.43  Aligned_cols=32  Identities=28%  Similarity=0.392  Sum_probs=30.3

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus         6 DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~   37 (397)
T 2oln_A            6 DVVVVGGGPVGLATAWQVAERGHRVLVLERHT   37 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            79999999999999999999999999999875

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=92.15  E-value=0.09  Score=48.52  Aligned_cols=33  Identities=24%  Similarity=0.287  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~   37 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE   37 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            379999999999999999999999999999874

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=92.12  E-value=0.074  Score=49.35  Aligned_cols=32  Identities=16%  Similarity=0.309  Sum_probs=30.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||+|.+|+-+|..|++.+.+|+++.+..
T Consensus         4 dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~   35 (372)
T 2uzz_A            4 DLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM   35 (372)
T ss_dssp             EEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            79999999999999999999999999999864

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=92.11  E-value=0.13  Score=41.23  Aligned_cols=35  Identities=11%  Similarity=0.166  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..++|+|+|+|..|..++..|.+.+.+|+++.+.+
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            35789999999999999999999888999999863

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=91.98  E-value=0.092  Score=50.65  Aligned_cols=33  Identities=27%  Similarity=0.304  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCC--cEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSE--KVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~--~V~l~~r~~  169 (396)
                      ++|+|||||.+|+=+|..|++.+.  +|+++.+++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~   37 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE   37 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence            589999999999999999999988  999999864

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=91.94  E-value=0.096  Score=48.88  Aligned_cols=33  Identities=24%  Similarity=0.266  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|++.+.+|+++.+..
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~   36 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            379999999999999999999999999999864

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=91.89  E-value=0.1  Score=49.30  Aligned_cols=33  Identities=30%  Similarity=0.302  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||||.+|+-+|..|++.+.+|+++.+.+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            479999999999999999999999999999875

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=91.77  E-value=0.085  Score=51.30  Aligned_cols=34  Identities=26%  Similarity=0.276  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++|+|||+|.+|+.+|..|++.+.+|+++.+++
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~   66 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   66 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence            5789999999999999999999899999998864

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=91.77  E-value=0.34  Score=46.99  Aligned_cols=62  Identities=11%  Similarity=0.142  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEcc---Cc--EEEcCEEEEcccCCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSN---GK--KKKYDFIAVCNGAQRVARYPN  113 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~---g~--~~~~d~vvvAtG~~~~p~~P~  113 (396)
                      ..++.+++.+..++.++.  ++++++|.+|+.. ++...|+..+   |+  ++.+|.||+|+|.  .|+...
T Consensus       224 d~~~~~~l~~~l~~~gv~--~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~--~p~~~~  291 (488)
T 3dgz_A          224 DQQMSSLVTEHMESHGTQ--FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGR--VPETRT  291 (488)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCE--EESCGG
T ss_pred             CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccC--CcccCc
Confidence            467889999999999988  9999999999885 5556676654   54  3689999999998  777643

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=91.68  E-value=0.087  Score=49.31  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~  170 (396)
                      ++|+|||||.+|+-+|..|++.  +.+|+++.+.+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~   36 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDE   36 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence            4799999999999999999998  899999998753

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=91.68  E-value=0.24  Score=48.39  Aligned_cols=55  Identities=15%  Similarity=0.169  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343          51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      +..-++..++.+. ...|++|++|++|+.. ++.+.|++.+|+++.||+||+|++..
T Consensus       201 ~~~l~~~l~~~l~-~~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~  256 (516)
T 1rsg_A          201 YDSVVQRIAQSFP-QNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQS  256 (516)
T ss_dssp             HHHHHHHHHTTSC-GGGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHH
T ss_pred             HHHHHHHHHHhCC-CCEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHH
Confidence            3344444444442 1359999999999986 67799999999889999999999873

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=91.67  E-value=0.13  Score=47.66  Aligned_cols=33  Identities=30%  Similarity=0.297  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+=+|..|++.+.+|+++.+..
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            589999999999999999999999999999863

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=91.60  E-value=0.11  Score=49.12  Aligned_cols=34  Identities=18%  Similarity=0.316  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      .++|+|||+|.+|+-+|..|++.+ .+|+++.+++
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~   40 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTD   40 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            468999999999999999999998 8999999864

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=91.59  E-value=0.091  Score=39.65  Aligned_cols=35  Identities=29%  Similarity=0.160  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      .+++|+|+|+|..|..++..|.+.+ .+|+++.|++
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            3579999999999999999999887 7899998864

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=91.57  E-value=0.097  Score=48.81  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|++.+.+|+++.+..
T Consensus         6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            479999999999999999999998999999864

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=91.41  E-value=0.11  Score=48.19  Aligned_cols=33  Identities=27%  Similarity=0.308  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++|+|||+|.+|+-+|..|+ .+.+|+++.+.+
T Consensus         9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~   41 (381)
T 3nyc_A            9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREA   41 (381)
T ss_dssp             ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSS
T ss_pred             cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCC
Confidence            468999999999999999999 488999999874

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=91.40  E-value=0.35  Score=48.01  Aligned_cols=58  Identities=10%  Similarity=0.025  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEc---cCc--EEEcCEEEEcccCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELS---NGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~---~g~--~~~~d~vvvAtG~~~  107 (396)
                      ...+...+...+.+.|..  |+++++|+++.+++++ |.|++.   +++  ++.+|.||+|||.++
T Consensus       187 ~~~l~~~l~~~a~~~Ga~--i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          187 DARLVIDNIKKAAEDGAY--LVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV  250 (571)
T ss_dssp             HHHHHHHHHHHHHHTTCE--EESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred             hHHHHHHHHHHHHHcCCe--EEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence            455666677778888887  8999999999987654 667653   233  589999999999964

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=91.36  E-value=0.14  Score=43.68  Aligned_cols=47  Identities=15%  Similarity=0.156  Sum_probs=31.1

Q ss_pred             ecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         124 HSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       124 hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      |.+......+...++|.|||+|..|.-+|..|++.+.+|+++.|++.
T Consensus         7 ~~~~~~~~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A            7 HHHHHHENLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -------------CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             cccccccccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            33334444566788999999999999999999998889999988753

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=91.28  E-value=0.13  Score=48.49  Aligned_cols=34  Identities=21%  Similarity=0.196  Sum_probs=31.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCc-EEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEK-VYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~-V~l~~r~~~  170 (396)
                      .+|+|||+|.+|+-+|..|++.+.+ |+++.|++.
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   39 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence            4899999999999999999999989 999999763

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=91.27  E-value=0.31  Score=45.57  Aligned_cols=55  Identities=13%  Similarity=0.278  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      +.++.+-|.+     .+...|+|+++|++++.. ++..+|++++|+++++|.||-|-|.+|
T Consensus       111 R~~L~~~L~~-----~~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S  166 (412)
T 4hb9_A          111 RTELKEILNK-----GLANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNS  166 (412)
T ss_dssp             HHHHHHHHHT-----TCTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             HHHHHHHHHh-----hccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCc
Confidence            4455544432     234569999999999886 567899999999999999999999976

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=91.27  E-value=0.12  Score=48.27  Aligned_cols=34  Identities=26%  Similarity=0.264  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      +.++|+|||+|.+|+-+|..|.+.+.+|+++.++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~   76 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN   76 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            4679999999999999999999999999999987

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=91.23  E-value=0.12  Score=49.84  Aligned_cols=35  Identities=23%  Similarity=0.237  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~   49 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   49 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            35689999999999999999999989999999875

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=91.18  E-value=0.14  Score=49.66  Aligned_cols=35  Identities=26%  Similarity=0.286  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +.++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~   44 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEART   44 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence            35689999999999999999999888999998764

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=91.17  E-value=0.24  Score=51.06  Aligned_cols=41  Identities=12%  Similarity=0.048  Sum_probs=36.8

Q ss_pred             CCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343          63 DVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        63 ~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      ++.  |+++++|++|+.++++++|++.+|+++.+|+||+|+..
T Consensus       543 gl~--I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~  583 (776)
T 4gut_A          543 GLD--IQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPL  583 (776)
T ss_dssp             TSC--EESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCH
T ss_pred             CCc--EEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCH
Confidence            554  99999999999988889999999988999999999965

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=91.16  E-value=0.14  Score=40.13  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=30.7

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +++++|+|+|+|..|..++..|.+.+.+|+++.|.+
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            456789999999999999999999888899988764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=91.14  E-value=0.14  Score=39.91  Aligned_cols=34  Identities=15%  Similarity=0.256  Sum_probs=30.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +.+|+|+|+|..|..+|..|.+.+.+|+++.|++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999888899998764

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=91.12  E-value=0.11  Score=48.77  Aligned_cols=33  Identities=21%  Similarity=0.246  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhc-CC-CcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASH-HS-EKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~-~~-~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|++ .+ .+|+++.+..
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            479999999999999999999 88 8999999865

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=91.03  E-value=0.13  Score=48.92  Aligned_cols=32  Identities=31%  Similarity=0.357  Sum_probs=29.9

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~   34 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE   34 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            69999999999999999999999999999854

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=90.92  E-value=0.1  Score=48.10  Aligned_cols=33  Identities=27%  Similarity=0.257  Sum_probs=29.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCC------CcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHS------EKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~------~~V~l~~r~~  169 (396)
                      ++|+|||+|.+|+-+|..|++.+      .+|+++.+..
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            37999999999999999999986      7899999864

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=90.67  E-value=0.33  Score=47.00  Aligned_cols=40  Identities=23%  Similarity=0.389  Sum_probs=34.7

Q ss_pred             ceEeCcEEEEEEEeCCeEEEEEccCc----EEEcCEEEEcccCC
Q psy2343          67 HSIFNTEVINLEQYEDIWEVELSNGK----KKKYDFIAVCNGAQ  106 (396)
Q Consensus        67 ~i~~~t~V~~v~~~~~~~~V~~~~g~----~~~~d~vvvAtG~~  106 (396)
                      .|+++++|++|+.++++|.|++.+++    ++.+|+||+|++..
T Consensus       254 ~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~  297 (498)
T 2iid_A          254 KVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSR  297 (498)
T ss_dssp             GEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHH
T ss_pred             ccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChH
Confidence            59999999999998888999887654    47999999999974

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=90.66  E-value=0.13  Score=49.32  Aligned_cols=32  Identities=25%  Similarity=0.394  Sum_probs=30.3

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||||.+|+-+|..|++.+.+|+++.+.+
T Consensus         8 dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~   39 (453)
T 3atr_A            8 DVLIIGGGFAGSSAAYQLSRRGLKILLVDSKP   39 (453)
T ss_dssp             SEEEECCSHHHHHHHHHHSSSSCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            69999999999999999999999999999875

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=90.64  E-value=0.14  Score=49.81  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=29.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~  169 (396)
                      -.|+|||||.+|+-+|..|++. +.+|+++.+++
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~   44 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE   44 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCC
Confidence            4799999999999999999874 88999999875

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=90.60  E-value=0.17  Score=39.83  Aligned_cols=35  Identities=14%  Similarity=0.290  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..++|+|+|+|..|..+|..|.+.+.+|+++.+.+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            35789999999999999999999989999998864

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=90.40  E-value=0.093  Score=50.22  Aligned_cols=32  Identities=28%  Similarity=0.174  Sum_probs=29.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEec
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTR  167 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r  167 (396)
                      ..+|+|||+|.+|+-+|..|++.+ .+|+++.+
T Consensus        23 ~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~   55 (448)
T 3axb_A           23 RFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA   55 (448)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence            357999999999999999999988 89999998

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=90.39  E-value=0.19  Score=47.13  Aligned_cols=33  Identities=33%  Similarity=0.491  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~   36 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   36 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            489999999999999999999889999999864

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=90.38  E-value=0.17  Score=48.25  Aligned_cols=33  Identities=24%  Similarity=0.287  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|++.+. +|+++.+.+
T Consensus         7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~   40 (438)
T 3dje_A            7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP   40 (438)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            479999999999999999999988 999999875

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=90.27  E-value=0.15  Score=49.64  Aligned_cols=33  Identities=30%  Similarity=0.461  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -+|+|||||.+|+-+|.+|++.+.+|+++.+..
T Consensus         4 ~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~   36 (501)
T 2qcu_A            4 KDLIVIGGGINGAGIAADAAGRGLSVLMLEAQD   36 (501)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence            369999999999999999999999999999864

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=90.23  E-value=0.36  Score=42.96  Aligned_cols=37  Identities=16%  Similarity=0.156  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++.||+|+|||.|. .|.-+|..|...+..|++++++.
T Consensus       156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t  193 (288)
T 1b0a_A          156 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT  193 (288)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            57899999999997 59999999999999999998764

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=90.19  E-value=0.69  Score=45.99  Aligned_cols=58  Identities=12%  Similarity=0.033  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCe-EEEEE---ccCc--EEEcCEEEEcccCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDI-WEVEL---SNGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~-~~V~~---~~g~--~~~~d~vvvAtG~~~  107 (396)
                      +.++.+.|.+.+.+.++.  |+++++|+++..+ +++ +-|..   .+|+  ++.+++||+|||.++
T Consensus       142 g~~l~~~L~~~~~~~gv~--i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~  206 (588)
T 2wdq_A          142 GHALLHTLYQQNLKNHTT--IFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG  206 (588)
T ss_dssp             HHHHHHHHHHHHHHTTCE--EEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHHHhCCCE--EEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence            468889999999888887  9999999999875 443 33443   3554  478999999999965

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=90.16  E-value=0.42  Score=45.82  Aligned_cols=55  Identities=5%  Similarity=-0.066  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe--CCeE-EEEEccCcEEEcCEEEEcccCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDIW-EVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~--~~~~-~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      .++.+-|.+.++..|..  |+++++|++|..+  ++++ .|.+ +|+++.+|+||+|+|.+
T Consensus       242 ~~l~~al~~~~~~~G~~--i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~  299 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGT--YMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYF  299 (453)
T ss_dssp             THHHHHHHHHHHHTTCE--EECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCE--EECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCcc
Confidence            47888888888888876  9999999999987  6664 4555 57779999999999984

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=90.13  E-value=0.52  Score=47.02  Aligned_cols=60  Identities=12%  Similarity=0.127  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHHcC-CCCceEeCcEEEEEEEeCCe-EEEE---EccCc--EEEcCEEEEcccCCCCC
Q psy2343          48 HSMMLDYLRSYAKKFD-VYNHSIFNTEVINLEQYEDI-WEVE---LSNGK--KKKYDFIAVCNGAQRVA  109 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~-l~~~i~~~t~V~~v~~~~~~-~~V~---~~~g~--~~~~d~vvvAtG~~~~p  109 (396)
                      +.++...|.+.+.+.+ +.  ++++++|+++..+++. .-|.   +.+|+  ++.+++||+|||.++..
T Consensus       133 g~~l~~~L~~~~~~~gnv~--i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~  199 (602)
T 1kf6_A          133 GFHMLHTLFQTSLQFPQIQ--RFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV  199 (602)
T ss_dssp             HHHHHHHHHHHHTTCTTEE--EEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCccc
Confidence            5688888888888777 66  8899999999877553 2222   24565  58899999999997543

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=90.00  E-value=0.089  Score=50.50  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCC------CcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHS------EKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~------~~V~l~~r~~  169 (396)
                      ++|+|||||.+|+=+|..|++.+      .+|+++.+++
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~   44 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP   44 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCC
Confidence            58999999999999999999988      8999999864

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=89.96  E-value=0.15  Score=49.76  Aligned_cols=34  Identities=24%  Similarity=0.421  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      .++|+|||+|.+|+-+|..|++.+ .+|+++.+++
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~   42 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD   42 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            458999999999999999999998 8999999865

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=89.93  E-value=0.23  Score=50.39  Aligned_cols=33  Identities=9%  Similarity=0.155  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ..+|+|||||.+|+-+|..|++.+.+|+++.+.
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~  304 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRRGWQVTLYCAD  304 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            368999999999999999999999999999985

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=89.92  E-value=0.16  Score=48.02  Aligned_cols=33  Identities=21%  Similarity=0.318  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|++.  +.+|+++.+..
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~   71 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG   71 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            4799999999999999999998  89999999864

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=89.87  E-value=0.28  Score=49.83  Aligned_cols=33  Identities=12%  Similarity=0.121  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ..+|+|||||.+|+=+|..|++.+.+|+++.+.
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~  296 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCAD  296 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCC
Confidence            368999999999999999999999999999985

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=89.86  E-value=0.23  Score=42.76  Aligned_cols=37  Identities=24%  Similarity=0.314  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++|++|+|.|+ |..|..++..|++.+.+|+++.|++
T Consensus        18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           18 YFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            568999999997 9999999999999999999999975

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=89.84  E-value=0.17  Score=50.20  Aligned_cols=33  Identities=24%  Similarity=0.350  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||||.+|+-+|.+|++.+.+|+++.+..
T Consensus        33 ~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~   65 (571)
T 2rgh_A           33 LDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD   65 (571)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            479999999999999999999999999999864

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=89.79  E-value=0.23  Score=49.22  Aligned_cols=33  Identities=27%  Similarity=0.350  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -.|+|||||.+|+-+|.+|++.+.+|.++.+.+
T Consensus        19 ~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d   51 (561)
T 3da1_A           19 LDLLVIGGGITGAGIALDAQVRGIQTGLVEMND   51 (561)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            379999999999999999999999999999863

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=89.78  E-value=0.17  Score=49.42  Aligned_cols=33  Identities=30%  Similarity=0.232  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus         5 ~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~   37 (520)
T 1s3e_A            5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARD   37 (520)
T ss_dssp             CSEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            579999999999999999999999999999864

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=89.74  E-value=0.24  Score=49.43  Aligned_cols=35  Identities=17%  Similarity=0.301  Sum_probs=32.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ...+|+|||||.+|+-+|..|++.+.+|+++.+.+
T Consensus        22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~   56 (591)
T 3i3l_A           22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSA   56 (591)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCC
Confidence            45799999999999999999999999999999874

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=89.74  E-value=0.38  Score=42.63  Aligned_cols=37  Identities=19%  Similarity=0.292  Sum_probs=32.8

Q ss_pred             CCCCCeEEEEcCCCc-HHHHHHHHhcC--CCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNS-GCDIAVDASHH--SEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~s-a~d~a~~l~~~--~~~V~l~~r~~  169 (396)
                      ++.||+|+|||.|.+ |.-+|..|...  +..|++++|+.
T Consensus       155 ~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t  194 (281)
T 2c2x_A          155 SIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT  194 (281)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence            678999999999975 99999999998  78999998764

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=89.73  E-value=0.19  Score=48.26  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+=+|..|++.+.+|+++.+++
T Consensus        12 ~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~   44 (453)
T 2bcg_G           12 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQD   44 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            479999999999999999999999999999875

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=89.64  E-value=0.22  Score=48.96  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhc---CCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASH---HSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~---~~~~V~l~~r~~  169 (396)
                      ..+|+|||||.+|+-+|..|++   .+.+|+++.+..
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   41 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA   41 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence            3589999999999999999999   888999999864

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=89.61  E-value=0.21  Score=49.93  Aligned_cols=33  Identities=30%  Similarity=0.455  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -+|+|||||..|+.+|..+++.+.+|.++.+.+
T Consensus        22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   54 (641)
T 3cp8_A           22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDL   54 (641)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEecc
Confidence            489999999999999999999999999999863

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=89.56  E-value=0.23  Score=48.16  Aligned_cols=34  Identities=38%  Similarity=0.411  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~   46 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   46 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC
Confidence            4689999999999999999999999999998875

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=89.56  E-value=0.2  Score=50.08  Aligned_cols=33  Identities=24%  Similarity=0.346  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -+|+|||||..|+.+|..+++.+.+|.++.+.+
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~   60 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNA   60 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecc
Confidence            479999999999999999999999999999863

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=89.53  E-value=0.22  Score=46.92  Aligned_cols=34  Identities=29%  Similarity=0.383  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~   62 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRP   62 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccC
Confidence            3589999999999999999999989999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.51  E-value=0.2  Score=41.35  Aligned_cols=37  Identities=16%  Similarity=0.189  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~  169 (396)
                      ...+++|+|+|.|..|..+|..|.+. +.+|+++.+++
T Consensus        36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            34577999999999999999999988 88999998864

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=89.49  E-value=0.41  Score=45.90  Aligned_cols=38  Identities=26%  Similarity=0.251  Sum_probs=34.3

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++++|+|+|||.|.||+-+|..|.+.+.+|+.+.++.
T Consensus         5 ~~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            5 TTFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             CTTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hhcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            35689999999999999999999999999999998854

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=89.46  E-value=0.23  Score=48.78  Aligned_cols=34  Identities=35%  Similarity=0.361  Sum_probs=31.4

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+|+|||+|.+|+-+|..|++.+.+|+++.|.+.
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~   39 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPG   39 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4799999999999999999999999999998763

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=89.34  E-value=0.24  Score=48.42  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~   40 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA   40 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence            479999999999999999999999999999875

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=89.24  E-value=1  Score=45.44  Aligned_cols=58  Identities=16%  Similarity=0.063  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEE---ccCc--EEEcCEEEEcccCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVEL---SNGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~---~~g~--~~~~d~vvvAtG~~~  107 (396)
                      +..+...|.+.+.+.++.  |+++++|+++..++++ .-|..   .+|+  .+.+++||+|||.++
T Consensus       157 G~~l~~~L~~~a~~~gv~--i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  220 (660)
T 2bs2_A          157 GHTMLFAVANECLKLGVS--IQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG  220 (660)
T ss_dssp             HHHHHHHHHHHHHHHTCE--EECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHHhCCCE--EEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence            568999999999888987  9999999999876553 22322   4565  478999999999965

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=89.19  E-value=0.21  Score=49.61  Aligned_cols=33  Identities=30%  Similarity=0.460  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus       127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~  159 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEP  159 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            479999999999999999999999999999875

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=89.07  E-value=0.45  Score=43.18  Aligned_cols=37  Identities=16%  Similarity=0.300  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEcCCCc-HHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNS-GCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~s-a~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++.||+|+|||+|.+ |.-+|..|...+..|+++.|+.
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~  211 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNN  211 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSE
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCch
Confidence            678999999999975 9999999998888899998864

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=89.02  E-value=0.26  Score=47.95  Aligned_cols=35  Identities=26%  Similarity=0.253  Sum_probs=31.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      ..+|+|||+|.+|+=+|..|++.+.+|+++.|.+.
T Consensus        12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~   46 (499)
T 2qa2_A           12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQ   46 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            34799999999999999999999999999998753

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=89.01  E-value=0.44  Score=42.67  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++.||+|+|||+|. .|.-+|..|...+..|++++++.
T Consensus       162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t  199 (301)
T 1a4i_A          162 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT  199 (301)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc
Confidence            57899999999996 69999999999988999998653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=88.96  E-value=0.26  Score=38.83  Aligned_cols=34  Identities=15%  Similarity=0.121  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++|+|+|.|..|..+|..|.+.+.+|+++.+.+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3579999999999999999999999999999875

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=88.89  E-value=1.1  Score=44.81  Aligned_cols=59  Identities=12%  Similarity=0.104  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE-EEEE---ccCc--EEEcCEEEEcccCCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVEL---SNGK--KKKYDFIAVCNGAQRV  108 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~-~V~~---~~g~--~~~~d~vvvAtG~~~~  108 (396)
                      +.++...|...+.+.++.  |+++++|+++..++++. -|..   .+|+  .+.+++||+|||.++.
T Consensus       154 G~~l~~~L~~~~~~~gv~--i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~  218 (621)
T 2h88_A          154 GHSLLHTLYGRSLRYDTS--YFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGR  218 (621)
T ss_dssp             HHHHHHHHHHHHTTSCCE--EEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred             HHHHHHHHHHHHHhCCCE--EEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccc
Confidence            568888998888888887  99999999998765532 2333   3564  5789999999999764

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=88.83  E-value=0.27  Score=45.76  Aligned_cols=32  Identities=25%  Similarity=0.341  Sum_probs=29.4

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~   34 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            69999999999999999999888999998764

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=88.78  E-value=0.25  Score=48.72  Aligned_cols=34  Identities=24%  Similarity=0.364  Sum_probs=31.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+|+|||+|.+|+=+|..|++.+.+|+++.|.+.
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~   60 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDG   60 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3799999999999999999999999999998763

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=88.72  E-value=0.3  Score=48.18  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhc---CCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASH---HSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~---~~~~V~l~~r~~  169 (396)
                      .++|+|||||..|.=+|..|++   .+.+|+++.+.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            4689999999999999999999   788999999864

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=88.57  E-value=0.5  Score=42.01  Aligned_cols=37  Identities=22%  Similarity=0.190  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++.||+|+|||.|. .|.-+|..|...+..|++++|+.
T Consensus       158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t  195 (285)
T 3l07_A          158 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT  195 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence            57899999999876 69999999999888999998763

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=88.54  E-value=0.28  Score=46.88  Aligned_cols=33  Identities=30%  Similarity=0.322  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~   38 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARD   38 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence            579999999999999999999988999998864

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=88.49  E-value=0.27  Score=47.90  Aligned_cols=34  Identities=29%  Similarity=0.250  Sum_probs=31.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+|+|||+|.+|+=+|..|++.+.+|+++.|.+.
T Consensus        12 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~   45 (500)
T 2qa1_A           12 AAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVE   45 (500)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4799999999999999999999999999998763

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=88.26  E-value=0.54  Score=41.81  Aligned_cols=37  Identities=24%  Similarity=0.241  Sum_probs=32.4

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +++||+|+|||.|. .|.-+|..|+..+..|++++++.
T Consensus       158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T  195 (286)
T 4a5o_A          158 DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT  195 (286)
T ss_dssp             CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC
Confidence            57899999999765 79999999999888999998754

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=88.26  E-value=0.26  Score=46.48  Aligned_cols=34  Identities=29%  Similarity=0.379  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~  169 (396)
                      ..+|+|||+|.+|+-+|..|++. +.+|+++.+++
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~   41 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRP   41 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            35799999999999999999998 88999998764

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=88.22  E-value=0.23  Score=47.83  Aligned_cols=34  Identities=24%  Similarity=0.258  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~  169 (396)
                      ..+|+|||+|.+|+-+|..|++.+  .+|+++.+++
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~   39 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGE   39 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            358999999999999999999988  8999999854

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=88.22  E-value=0.38  Score=42.73  Aligned_cols=37  Identities=19%  Similarity=0.204  Sum_probs=32.8

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+++|+|+|+|+|..|.-+|..|++.+.+|+++.|+.
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4578999999999999999999999888999998864

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=88.18  E-value=0.3  Score=49.42  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -.+++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~  140 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD  140 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            357899999999999999999999999999999764

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=88.11  E-value=0.58  Score=41.77  Aligned_cols=37  Identities=22%  Similarity=0.381  Sum_probs=32.4

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      ..++|+|+|+|+|..|.-++..|.+.+ ++|+++.|+.
T Consensus       119 ~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          119 EIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             CCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            467999999999999999999998875 4899999874

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=88.04  E-value=0.21  Score=48.69  Aligned_cols=33  Identities=21%  Similarity=0.243  Sum_probs=29.1

Q ss_pred             CeEEEEcCCCcHHHHHHHHhc---CCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASH---HSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~---~~~~V~l~~r~~  169 (396)
                      .+|+|||||.+|+=+|..|++   .+.+|+++.+..
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~   38 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN   38 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence            479999999999999999999   888999999864

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=88.02  E-value=0.28  Score=47.47  Aligned_cols=34  Identities=24%  Similarity=0.250  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~   72 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARD   72 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3589999999999999999999989999999864

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=88.02  E-value=0.24  Score=45.24  Aligned_cols=32  Identities=31%  Similarity=0.339  Sum_probs=29.8

Q ss_pred             eEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~  169 (396)
                      +|+|||+|.+|+-+|..|++.  +.+|+++.+.+
T Consensus        67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~  100 (326)
T 2gjc_A           67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV  100 (326)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEecCc
Confidence            799999999999999999987  88999999865

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=88.01  E-value=0.43  Score=46.34  Aligned_cols=51  Identities=16%  Similarity=0.154  Sum_probs=41.0

Q ss_pred             HHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCC
Q psy2343          57 SYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARY  111 (396)
Q Consensus        57 ~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~  111 (396)
                      +.+++.|++  ++++++|++|+.+++...|.+.+|+++.+|.||+|+|.  .|+.
T Consensus       265 ~~l~~~GV~--v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~--~p~~  315 (493)
T 1y56_A          265 QELERWGID--YVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGR--RPDI  315 (493)
T ss_dssp             HHHHHHTCE--EEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCE--EECC
T ss_pred             HHHHhCCcE--EEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCc--CcCc
Confidence            455667887  88999999998765555677778888999999999999  6664

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=88.00  E-value=0.26  Score=45.32  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=30.0

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~  169 (396)
                      -+|+|||+|.+|+-+|..|++.  +.+|.++.+.+
T Consensus        80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~  114 (344)
T 3jsk_A           80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGV  114 (344)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            4799999999999999999996  78999999875

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=87.95  E-value=0.3  Score=46.72  Aligned_cols=37  Identities=16%  Similarity=0.117  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++++|+|+|||.|.+|+..|..|++.+.+|+.+..+.
T Consensus         2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~   38 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (439)
T ss_dssp             CCTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSS
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCC
Confidence            3578999999999999999999999999999998765

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=87.85  E-value=0.26  Score=48.79  Aligned_cols=33  Identities=30%  Similarity=0.476  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -+|+|||+|.+|+-+|..|++.+.+|+++.+.+
T Consensus       122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~  154 (566)
T 1qo8_A          122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP  154 (566)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            379999999999999999999888999999875

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=87.76  E-value=0.35  Score=50.32  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+++|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~  311 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD  311 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            57899999999999999999999999999999764

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=87.55  E-value=0.38  Score=42.72  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+++|+|+|+|+|..|.-+|..|++.+.+|+++.|+.
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4678999999999999999999999888999999874

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=87.50  E-value=0.35  Score=47.22  Aligned_cols=32  Identities=25%  Similarity=0.401  Sum_probs=30.2

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+-.|..|++.+.+|.++.+.+
T Consensus        43 DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~   74 (510)
T 4at0_A           43 DVVVAGYGIAGVAASIEAARAGADVLVLERTS   74 (510)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            69999999999999999999998999999875

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=87.45  E-value=0.4  Score=46.45  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      ..+|+|||+|.+|+-+|..|++.+ .+|+++.+++
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~   43 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECND   43 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence            468999999999999999999987 7999999875

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=87.32  E-value=0.64  Score=41.11  Aligned_cols=36  Identities=11%  Similarity=0.113  Sum_probs=31.8

Q ss_pred             CCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +.||+|+|||.|. .|.-+|..|...+..|++++++.
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t  184 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT  184 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            7899999999875 79999999999888999998753

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=87.28  E-value=0.24  Score=45.18  Aligned_cols=35  Identities=29%  Similarity=0.263  Sum_probs=30.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhc--CCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASH--HSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~--~~~~V~l~~r~~  169 (396)
                      ....|+|||+|..|+-+|..|++  .+.+|+++.+.+
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~  100 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV  100 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            45679999999999999999974  478999999864

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=87.27  E-value=0.46  Score=42.24  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      .+++|+++|+|+|..|.-++..|++.+ ++|+++.|+.
T Consensus       117 ~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          117 PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            467999999999999999999999886 6899998874

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=87.26  E-value=0.55  Score=41.94  Aligned_cols=37  Identities=14%  Similarity=0.270  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      .+++|+++|+|+|..|.-++..|++.+ ++|+++.|+.
T Consensus       123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          123 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             CccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            567999999999999999999999887 6899999874

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=87.19  E-value=0.44  Score=42.21  Aligned_cols=34  Identities=24%  Similarity=0.349  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|+|+|+|..|.-++..|++.+.+|+++.|+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            8999999999999999999999888999999875

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=87.11  E-value=0.37  Score=48.53  Aligned_cols=33  Identities=21%  Similarity=0.357  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHhc-CCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASH-HSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~-~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|++ .+.+|.++.+++
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~   66 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKE   66 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            379999999999999999999 899999999875

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=86.98  E-value=0.64  Score=46.97  Aligned_cols=39  Identities=21%  Similarity=-0.014  Sum_probs=34.4

Q ss_pred             ceEeCcEEEEEEEeCCeEEEEEcc------CcEEEcCEEEEcccC
Q psy2343          67 HSIFNTEVINLEQYEDIWEVELSN------GKKKKYDFIAVCNGA  105 (396)
Q Consensus        67 ~i~~~t~V~~v~~~~~~~~V~~~~------g~~~~~d~vvvAtG~  105 (396)
                      .|++|++|++|+..+++++|++.+      +.+++||+||+|+..
T Consensus       412 ~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~  456 (662)
T 2z3y_A          412 DIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPL  456 (662)
T ss_dssp             EEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCH
T ss_pred             ceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCCH
Confidence            399999999999998889999876      567999999999986

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=86.91  E-value=0.37  Score=47.17  Aligned_cols=34  Identities=15%  Similarity=0.141  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhc------------CCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASH------------HSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~------------~~~~V~l~~r~~  169 (396)
                      .++|+|||||.+|.=+|..|++            .+.+|+++.+..
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~   52 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD   52 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence            4689999999999999999999            778999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=86.77  E-value=0.25  Score=39.07  Aligned_cols=34  Identities=29%  Similarity=0.268  Sum_probs=29.6

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +++|+|||+|..|.-++..|...+.+|+++.|++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            8899999999999999998887766688888864

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=86.72  E-value=0.55  Score=42.65  Aligned_cols=38  Identities=21%  Similarity=0.386  Sum_probs=32.6

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~  169 (396)
                      ..+++|+++|+|+|-.|.-++..|++.+. +|+++.|++
T Consensus       150 ~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          150 HDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            35689999999999988899999988764 899999973

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=86.64  E-value=0.43  Score=46.02  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -+|+|||+|.+|+-+|..|++.+.+|.++.+++
T Consensus        21 ~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~   53 (475)
T 3p1w_A           21 YDVIILGTGLKECILSGLLSHYGKKILVLDRNP   53 (475)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeccC
Confidence            379999999999999999999999999999875

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=86.60  E-value=0.57  Score=42.03  Aligned_cols=38  Identities=26%  Similarity=0.307  Sum_probs=33.6

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++.||+|+|||.|..|..+|..+...+.+|+++.|++
T Consensus       151 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          151 FTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             SCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            35789999999999999999999998887899888764

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=86.33  E-value=0.77  Score=44.43  Aligned_cols=51  Identities=12%  Similarity=0.227  Sum_probs=37.7

Q ss_pred             HHHHHHHHcCCCCceEeCcEEEEEEEeCCe------EEEEEc--cC---cEEEcCEEEEcccC
Q psy2343          54 YLRSYAKKFDVYNHSIFNTEVINLEQYEDI------WEVELS--NG---KKKKYDFIAVCNGA  105 (396)
Q Consensus        54 Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~------~~V~~~--~g---~~~~~d~vvvAtG~  105 (396)
                      -.+..+++.+ ...|+++++|++|+..+++      |.|++.  +|   +++.||+||+|+..
T Consensus       245 l~~~l~~~l~-~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~  306 (504)
T 1sez_A          245 LTDAICKDLR-EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPL  306 (504)
T ss_dssp             HHHHHHTTSC-TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCH
T ss_pred             HHHHHHhhcc-cceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECCEEEECCCH
Confidence            3444445544 1359999999999988665      888875  35   46789999999987

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=86.31  E-value=0.71  Score=41.95  Aligned_cols=40  Identities=13%  Similarity=0.164  Sum_probs=35.0

Q ss_pred             CCCCCCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         130 SPDQIRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       130 ~~~~~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+..+++++|+|.|+ |..|..++..|++.+.+|+++.|+.
T Consensus        14 ~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           14 LVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             CcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            345788999999997 9999999999999888999999854

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=86.19  E-value=0.43  Score=49.65  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|++.+. +|+++.+..
T Consensus         5 ~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~   38 (830)
T 1pj5_A            5 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   38 (830)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence            479999999999999999999987 899999865

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=86.13  E-value=0.61  Score=41.99  Aligned_cols=38  Identities=26%  Similarity=0.331  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++.|++|+|||.|..|..+|..+...+.+|+++.|++
T Consensus       153 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          153 YTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             SCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46789999999999999999999998888899988764

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=86.11  E-value=0.58  Score=41.50  Aligned_cols=36  Identities=19%  Similarity=0.355  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      ++++|+|.|+|..|..++..|++.+.+|+.+.|+..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            357899999999999999999999899999999753

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=86.04  E-value=0.57  Score=41.93  Aligned_cols=36  Identities=17%  Similarity=0.454  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+++|+|+|+|+|..|..+|..|++.+ +|+++.|+.
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            467899999999999999999999999 999988864

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=85.92  E-value=0.4  Score=42.71  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~  169 (396)
                      .+++|+++|+|+|..|.-++..|++.+. +|+++.|+.
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4678999999999999999999998864 899999875

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=85.84  E-value=0.65  Score=41.79  Aligned_cols=37  Identities=24%  Similarity=0.392  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~  169 (396)
                      .+++|+|+|+|+|..|.-+|..|++.+. +|+++.|+.
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4678999999999999999999998864 899998874

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=85.83  E-value=0.51  Score=46.95  Aligned_cols=32  Identities=22%  Similarity=0.317  Sum_probs=29.9

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+=+|..+++.+.+|.++.+.+
T Consensus         9 DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~   40 (588)
T 2wdq_A            9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF   40 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            69999999999999999999888999999864

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=85.67  E-value=0.68  Score=41.95  Aligned_cols=38  Identities=21%  Similarity=0.397  Sum_probs=32.6

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      ..+++|+++|+|+|-.|.-++..|++.+ ++|+++.|++
T Consensus       144 ~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~  182 (312)
T 3t4e_A          144 FDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKD  182 (312)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            3567999999999999999999998875 5899999973

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=85.66  E-value=0.6  Score=45.90  Aligned_cols=58  Identities=10%  Similarity=-0.039  Sum_probs=39.8

Q ss_pred             hHHHHHHHHHHHHH-cCCCCceEeCcEEEEEEE-eCC------e-EEEEEc---cCc--EEEcCEEEEcccCCC
Q psy2343          48 HSMMLDYLRSYAKK-FDVYNHSIFNTEVINLEQ-YED------I-WEVELS---NGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~-~~l~~~i~~~t~V~~v~~-~~~------~-~~V~~~---~g~--~~~~d~vvvAtG~~~  107 (396)
                      +.++.+.|.+.+.+ .++.  |+++++|+++.. +++      + +-|.+.   +|+  ++.+++||+|||.++
T Consensus       137 g~~l~~~L~~~~~~~~gv~--i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~  208 (540)
T 1chu_A          137 GREVETTLVSKALNHPNIR--VLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGAS  208 (540)
T ss_dssp             -----CCCHHHHHHCTTEE--EECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHHcCCCCE--EEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            45677777788877 6776  899999999987 433      3 334443   464  588999999999965

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=85.55  E-value=0.44  Score=49.06  Aligned_cols=35  Identities=29%  Similarity=0.392  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+++|+|||+|.+|+-.|..|++.+.+|+++.+++
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~  369 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKD  369 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            46799999999999999999999999999999754

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=85.50  E-value=0.66  Score=43.03  Aligned_cols=36  Identities=17%  Similarity=0.192  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .+.||+|+|+|.|+.|.-+|..|.+.+.+|+++.+.
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~  205 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN  205 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence            688999999999999999999999998888877653

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=85.36  E-value=1.6  Score=43.97  Aligned_cols=60  Identities=8%  Similarity=0.081  Sum_probs=48.4

Q ss_pred             CChHHHHHHHHHHHHHcC---CCCceEeCcEEEEEEEeC--------CeEEEEEc-------------------------
Q psy2343          46 PNHSMMLDYLRSYAKKFD---VYNHSIFNTEVINLEQYE--------DIWEVELS-------------------------   89 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~---l~~~i~~~t~V~~v~~~~--------~~~~V~~~-------------------------   89 (396)
                      .++..+.++|.+.+..++   +.  |+++++|++++.++        ...+|++.                         
T Consensus       116 l~q~~le~~L~~~~~~~g~~~v~--v~~g~~v~~~~~d~~~~~~~~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l  193 (665)
T 1pn0_A          116 LHQGRIERRILDSIAEISDTRIK--VERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNL  193 (665)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSSC--EECSEEEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCCCTTCCCCCSSSCCCHH
T ss_pred             eeHHHHHHHHHHHHHhcCCCceE--EEeCCEEEEEEecCcccccCCCCCEEEEEEecccccccccccccccccccccccc
Confidence            467899999999999887   55  99999999998864        35666553                         


Q ss_pred             -----------------cC--cEEEcCEEEEcccCCC
Q psy2343          90 -----------------NG--KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        90 -----------------~g--~~~~~d~vvvAtG~~~  107 (396)
                                       +|  +++++|+||-|.|.++
T Consensus       194 ~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S  230 (665)
T 1pn0_A          194 QTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHS  230 (665)
T ss_dssp             HHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTC
T ss_pred             cccccccccccccccCCCCceEEEEeCEEEeccCCCC
Confidence                             34  4589999999999976

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=85.32  E-value=1  Score=39.46  Aligned_cols=37  Identities=30%  Similarity=0.277  Sum_probs=32.8

Q ss_pred             CCCCCeEEEEcC-C-CcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGA-G-NSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~-G-~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+++|+|+|.|+ | -.|..+|..|++.+.+|.++.|+.
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            478999999999 6 499999999999999999998864

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=85.30  E-value=0.67  Score=41.41  Aligned_cols=37  Identities=24%  Similarity=0.285  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~  169 (396)
                      .+++|+|+|+|+|..|.-++..|++.+. +|+++.|+.
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            4679999999999999999999988764 799998874

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=85.17  E-value=1.9  Score=39.64  Aligned_cols=60  Identities=8%  Similarity=0.056  Sum_probs=47.2

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEE-E-ccC--cEEEcCEEEEcccCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVE-L-SNG--KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~-~-~~g--~~~~~d~vvvAtG~~~  107 (396)
                      ..+..+.+.|.+.+...|..  ++++++|+.+..+++..... . .++  .++++|.||.|.|.++
T Consensus        99 i~R~~~~~~L~~~a~~~G~~--~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S  162 (397)
T 3oz2_A           99 LERDKFDKHLAALAAKAGAD--VWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFES  162 (397)
T ss_dssp             ECHHHHHHHHHHHHHHHTCE--EESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             EEHHHHHHHHHHHHHhcCcE--EeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCcccc
Confidence            36889999999999999987  89999999998876654332 2 223  2478999999999965

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=85.17  E-value=0.75  Score=38.22  Aligned_cols=34  Identities=24%  Similarity=0.333  Sum_probs=31.0

Q ss_pred             CCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +++|+|.|+ |..|..++..|++.+.+|+++.|++
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            478999997 9999999999999888999999975

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=85.16  E-value=0.57  Score=40.77  Aligned_cols=38  Identities=21%  Similarity=0.265  Sum_probs=31.8

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+.+++|.|||.|..|.-+|..|++.+.+|++..|++
T Consensus        15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           15 LYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            35678999999999999999999999888999998875

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=84.87  E-value=0.57  Score=46.42  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+|+|||+|..|+-+|..|++.+.+|+++.+.+
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~  159 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP  159 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            4579999999999999999999989999999875

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=84.53  E-value=0.45  Score=47.32  Aligned_cols=33  Identities=24%  Similarity=0.353  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcC------CCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHH------SEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~------~~~V~l~~r~~  169 (396)
                      -+|+|||+|.+|+-+|..|++.      +.+|.++.+.+
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~   74 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   74 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCC
Confidence            3699999999999999999998      88999999875

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=84.46  E-value=0.54  Score=45.35  Aligned_cols=31  Identities=23%  Similarity=0.415  Sum_probs=28.8

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .|+|||+|..|+-+|..|++.+.+|.++.+.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4899999999999999999888899999886

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=84.44  E-value=1  Score=46.77  Aligned_cols=38  Identities=21%  Similarity=-0.018  Sum_probs=33.8

Q ss_pred             eEeCcEEEEEEEeCCeEEEEEcc------CcEEEcCEEEEcccC
Q psy2343          68 SIFNTEVINLEQYEDIWEVELSN------GKKKKYDFIAVCNGA  105 (396)
Q Consensus        68 i~~~t~V~~v~~~~~~~~V~~~~------g~~~~~d~vvvAtG~  105 (396)
                      |++|++|++|+..+++++|++.+      +.++.+|+||+|+-.
T Consensus       584 I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl  627 (852)
T 2xag_A          584 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPL  627 (852)
T ss_dssp             EECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCH
T ss_pred             EEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCCH
Confidence            99999999999998889998865      567999999999875

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=84.39  E-value=0.6  Score=47.21  Aligned_cols=32  Identities=38%  Similarity=0.364  Sum_probs=30.2

Q ss_pred             eEEEEcCCCcHHHHHHHHhc-----CCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASH-----HSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~-----~~~~V~l~~r~~  169 (396)
                      +|+|||+|.+|+=+|..|++     .+-+|.++.+++
T Consensus        10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~   46 (665)
T 1pn0_A           10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   46 (665)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCC
Confidence            69999999999999999999     889999999875

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=84.25  E-value=0.87  Score=39.11  Aligned_cols=37  Identities=16%  Similarity=0.311  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEcC-----------------CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGA-----------------GNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~-----------------G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+.||+|+|-||                 |..|..+|..+++.+.+|+++.|..
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~   58 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPV   58 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCc
Confidence            468999999999                 6789999999999999999998754

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=84.16  E-value=0.68  Score=46.36  Aligned_cols=32  Identities=28%  Similarity=0.244  Sum_probs=29.8

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+=.|..+++.+.+|.++.+.+
T Consensus        20 DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~   51 (621)
T 2h88_A           20 DAVVVGAGGAGLRAAFGLSEAGFNTACVTKLF   51 (621)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence            79999999999999999999888999999864

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=84.05  E-value=0.97  Score=41.32  Aligned_cols=38  Identities=21%  Similarity=0.224  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++.|++|.|||.|..|..+|..+...+.+|+.+.|+.
T Consensus       151 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  188 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ  188 (330)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            46789999999999999999999998888899888764

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=83.95  E-value=0.57  Score=46.08  Aligned_cols=31  Identities=23%  Similarity=0.467  Sum_probs=29.2

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+=+|..+++ +.+|.++.+.+
T Consensus        10 DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~   40 (540)
T 1chu_A           10 DVLIIGSGAAGLSLALRLAD-QHQVIVLSKGP   40 (540)
T ss_dssp             SEEEECCSHHHHHHHHHHTT-TSCEEEECSSC
T ss_pred             CEEEECccHHHHHHHHHHhc-CCcEEEEECCC
Confidence            69999999999999999999 88999999875

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=83.91  E-value=0.63  Score=46.98  Aligned_cols=32  Identities=22%  Similarity=0.224  Sum_probs=29.8

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+=.|..+++.+.+|.++.+.+
T Consensus         7 DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~   38 (660)
T 2bs2_A            7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (660)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             cEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            69999999999999999999888999999864

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=83.89  E-value=0.69  Score=42.23  Aligned_cols=38  Identities=18%  Similarity=0.205  Sum_probs=30.0

Q ss_pred             CCCCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ...++|+|+|.|+ |..|..++..|++.+.+|+.+.|++
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~   53 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRP   53 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            3567899999997 9999999999999989999999875

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=83.55  E-value=0.35  Score=42.38  Aligned_cols=36  Identities=22%  Similarity=0.382  Sum_probs=31.3

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      +++++|+|||+|..|..+|..|++.+ .+++++.+..
T Consensus        29 l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           29 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            46789999999999999999999875 5899988764

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=83.47  E-value=0.94  Score=40.97  Aligned_cols=33  Identities=30%  Similarity=0.340  Sum_probs=29.8

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|..|.=+|..|++.+.+|+++.|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            479999999999999999999888999999864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=83.43  E-value=0.82  Score=40.40  Aligned_cols=33  Identities=12%  Similarity=0.197  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++|+|.|+|..|..++..|.+.+.+|+.+.|++
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            689999999999999999999999999999975

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=83.42  E-value=3.8  Score=41.13  Aligned_cols=63  Identities=11%  Similarity=-0.041  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHHHc-CC-CCceEeCcEEEEEEEeCC---eE-EEEE---ccCc--EEEcCEEEEcccCCCCCCCC
Q psy2343          48 HSMMLDYLRSYAKKF-DV-YNHSIFNTEVINLEQYED---IW-EVEL---SNGK--KKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~-~l-~~~i~~~t~V~~v~~~~~---~~-~V~~---~~g~--~~~~d~vvvAtG~~~~p~~P  112 (396)
                      +..+...|...+++. ++ .  |+++++|+++..+++   +. -|..   .+|+  .+.+++||+|||.++.-..|
T Consensus       150 g~~~~~~l~~~~~~~~gv~~--i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~y~~  223 (643)
T 1jnr_A          150 GESYKPIIAEAAKMAVGEEN--IYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRP  223 (643)
T ss_dssp             ETTHHHHHHHHHHHHHCGGG--EECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCC
T ss_pred             cHHHHHHHHHHHHhcCCCcE--EEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcccccccC
Confidence            345677778888777 87 6  899999999987644   32 2322   4554  47899999999997753333

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=83.39  E-value=0.7  Score=44.00  Aligned_cols=33  Identities=30%  Similarity=0.424  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus         7 ~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~   39 (433)
T 1d5t_A            7 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNP   39 (433)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            579999999999999999999999999999864

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=83.33  E-value=1  Score=39.13  Aligned_cols=41  Identities=29%  Similarity=0.263  Sum_probs=32.6

Q ss_pred             CCCCCCCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         129 KSPDQIRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       129 ~~~~~~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .....+++|+|+|.|+ |..|..+|..|++.+.+|+++.|+.
T Consensus        12 ~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   53 (249)
T 1o5i_A           12 HMELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   53 (249)
T ss_dssp             ----CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hHHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3445788999999985 6789999999999988999998863

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=83.29  E-value=1.3  Score=41.18  Aligned_cols=37  Identities=19%  Similarity=0.127  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ...+|+|+|+|+|..|..++..+.+.+-+|.++.+.+
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~   45 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSE   45 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4568999999999999999999999998998887654

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=83.16  E-value=0.99  Score=41.31  Aligned_cols=38  Identities=24%  Similarity=0.301  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++.||+|.|||.|..|..+|..+...+-+|+...|++
T Consensus       160 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~  197 (333)
T 3ba1_A          160 TKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSK  197 (333)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            46789999999999999999999999888899888765

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=83.13  E-value=0.98  Score=41.36  Aligned_cols=38  Identities=26%  Similarity=0.348  Sum_probs=34.1

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++.|++|.|||.|..|..+|..+...+.+|+.+.|++
T Consensus       142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~  179 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHR  179 (333)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            46889999999999999999999998888898888765

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=83.04  E-value=1.1  Score=40.59  Aligned_cols=38  Identities=18%  Similarity=0.116  Sum_probs=34.5

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++.||+|.|||.|..|..+|..+...+-+|+...|++
T Consensus       135 ~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~  172 (315)
T 3pp8_A          135 YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSR  172 (315)
T ss_dssp             CCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            46789999999999999999999999988999988865

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=82.99  E-value=0.97  Score=41.39  Aligned_cols=38  Identities=21%  Similarity=0.292  Sum_probs=34.1

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++.|++|.|||.|..|..+|..++..+.+|+.+.|++
T Consensus       146 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  183 (334)
T 2dbq_A          146 YDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTR  183 (334)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCc
Confidence            46789999999999999999999999888898888764

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=82.91  E-value=2.1  Score=38.30  Aligned_cols=37  Identities=24%  Similarity=0.258  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEc-CCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVG-AGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG-~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +++||+++||| +...|.=+|..|.+....||+++.+.
T Consensus       176 ~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T  213 (303)
T 4b4u_A          176 EIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT  213 (303)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC
Confidence            56899999999 55668889999998888999988654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=82.83  E-value=0.82  Score=40.73  Aligned_cols=33  Identities=27%  Similarity=0.320  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++|.|||+|..|.-+|..++..+.+|+++.|++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            689999999999999999999999999998864

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=82.68  E-value=1.1  Score=39.97  Aligned_cols=37  Identities=19%  Similarity=0.274  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEc-CCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVG-AGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG-~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+++|+++|+| +|-.|..++..|++.+.+|+++.|+.
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            46789999999 89999999999999887899998864

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=82.61  E-value=0.75  Score=46.08  Aligned_cols=33  Identities=27%  Similarity=0.313  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..|+|||+|..|+-+|..|++.+.+|+++.+.+
T Consensus        47 ~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~   79 (623)
T 3pl8_A           47 YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGE   79 (623)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCcEEEEeccC
Confidence            379999999999999999999999999999865

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=82.52  E-value=0.74  Score=44.23  Aligned_cols=34  Identities=32%  Similarity=0.337  Sum_probs=29.6

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~  169 (396)
                      ..+|+|||+|.+|+-+|..|++.+. +|+++.+++
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~   38 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATD   38 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCC
Confidence            3579999999999999999999886 899998763

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=82.46  E-value=1.6  Score=38.50  Aligned_cols=36  Identities=17%  Similarity=0.244  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcC---CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGA---GNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~---G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +++|+|+|.|+   |-.|..+|..|++.+.+|+++.|+.
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~   42 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   42 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999997   5899999999999999999998875

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=82.29  E-value=1.1  Score=41.29  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR  167 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r  167 (396)
                      +++||+|+|+|.|+.|..+|..+...+.+|.++.+
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~  206 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADT  206 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeC
Confidence            68999999999999999999999999888886654

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=82.22  E-value=0.93  Score=41.17  Aligned_cols=33  Identities=21%  Similarity=0.248  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|||+|..|.=+|..|++.+.+|+++.|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            589999999999999999999888999999864

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=82.18  E-value=1.4  Score=40.23  Aligned_cols=39  Identities=23%  Similarity=0.390  Sum_probs=34.8

Q ss_pred             CCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         131 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       131 ~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..++.||+|.|||.|..|..+|..+...+-+|+.+.|++
T Consensus       132 ~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  170 (324)
T 3evt_A          132 TSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTG  170 (324)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCc
Confidence            346789999999999999999999999888999888865

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=82.13  E-value=0.9  Score=43.11  Aligned_cols=38  Identities=18%  Similarity=0.162  Sum_probs=33.6

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+.||+|+|||.|..|..+|..+...+.+|++..+.+
T Consensus       243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp  280 (464)
T 3n58_A          243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDP  280 (464)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            36789999999999999999999998888898887654

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=82.11  E-value=1.4  Score=38.49  Aligned_cols=39  Identities=15%  Similarity=0.192  Sum_probs=33.4

Q ss_pred             CCCCCCCeEEEEcC---CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         131 PDQIRNKRVLVVGA---GNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       131 ~~~~~~k~VvVVG~---G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ...+++|+|+|.|+   |-.|..+|..|++.+.+|.++.|+.
T Consensus         9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~   50 (271)
T 3ek2_A            9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD   50 (271)
T ss_dssp             CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch
Confidence            34678999999996   4789999999999999999998864

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=82.05  E-value=0.89  Score=43.72  Aligned_cols=37  Identities=22%  Similarity=0.243  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+.||+|+|+|+|..|.-+|..|+..+.+|+++.+.+
T Consensus       262 ~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          262 MIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4789999999999999999999999988998887754

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=81.82  E-value=1.1  Score=43.25  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=30.5

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~  169 (396)
                      .+++++|+|+|+|..|.-++..|++. +.+|+++.|+.
T Consensus        20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~   57 (467)
T 2axq_A           20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTL   57 (467)
T ss_dssp             ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSH
T ss_pred             CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            56789999999999999999999987 56899998864

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=81.77  E-value=1.5  Score=39.62  Aligned_cols=37  Identities=22%  Similarity=0.285  Sum_probs=33.6

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++.|++|.|||.|..|..+|..+...+-+|+...|++
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~  157 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP  157 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            6789999999999999999999998888898888765

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=81.73  E-value=1.2  Score=40.29  Aligned_cols=38  Identities=16%  Similarity=0.183  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++.|++|.|||.|..|..+|..+...+.+|+.+.|++
T Consensus       138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~  175 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYP  175 (307)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            46789999999999999999999998888898888764

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=81.65  E-value=1.3  Score=40.58  Aligned_cols=59  Identities=12%  Similarity=0.016  Sum_probs=39.9

Q ss_pred             ChHHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeC-----------------CeEEE---EE------cc--------C
Q psy2343          47 NHSMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYE-----------------DIWEV---EL------SN--------G   91 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~-----------------~~~~V---~~------~~--------g   91 (396)
                      +..++.+.|...+..+ ++.  ++++++|+++..++                 +..+|   .+      .+        .
T Consensus       158 ~~~d~~~~L~~~a~~~~gV~--i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~  235 (344)
T 3jsk_A          158 HAALFTSTVLSKVLQRPNVK--LFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDP  235 (344)
T ss_dssp             CHHHHHHHHHHHHHTCTTEE--EEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBC
T ss_pred             cHHHHHHHHHHHHHhCCCCE--EEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCc
Confidence            3567777777777764 766  88999999987653                 21222   11      11        2


Q ss_pred             cEEEcCEEEEcccCCC
Q psy2343          92 KKKKYDFIAVCNGAQR  107 (396)
Q Consensus        92 ~~~~~d~vvvAtG~~~  107 (396)
                      .++.+++||+|||+.+
T Consensus       236 ~~i~Ak~VV~ATG~~s  251 (344)
T 3jsk_A          236 NTINAPVIISTTGHDG  251 (344)
T ss_dssp             EEEECSEEEECCCSSS
T ss_pred             eEEEcCEEEECCCCCc
Confidence            3589999999999943

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=81.56  E-value=1.5  Score=38.86  Aligned_cols=37  Identities=16%  Similarity=0.229  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEcC-CC--cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGA-GN--SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~-G~--sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+++|.|+|.|+ |.  .|..+|..|++.+.+|.++.|+.
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            567999999996 44  89999999999988999998864

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=81.56  E-value=1.2  Score=40.35  Aligned_cols=38  Identities=21%  Similarity=0.233  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+..|++|.|||.|..|..+|..+...+.+|+.+.|++
T Consensus       138 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~  175 (313)
T 2ekl_A          138 LELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILD  175 (313)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            46789999999999999999999998888898887764

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=81.50  E-value=0.98  Score=42.67  Aligned_cols=38  Identities=21%  Similarity=0.224  Sum_probs=33.6

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+.||+|+|+|.|..|..+|..+...+.+|++..+.+
T Consensus       216 ~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          216 MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            35789999999999999999999998888898887754

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=81.45  E-value=0.98  Score=42.74  Aligned_cols=38  Identities=21%  Similarity=0.178  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+.||+|+|||.|..|..+|..|...+.+|+++.+.+
T Consensus       207 ~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p  244 (436)
T 3h9u_A          207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDP  244 (436)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            46789999999999999999999999988898887754

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=81.43  E-value=0.76  Score=45.86  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=29.4

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+-+|..|++.+  .+|.++.+.+
T Consensus         7 DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~   40 (602)
T 1kf6_A            7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY   40 (602)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            6999999999999999999987  8999999864

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=81.40  E-value=1.6  Score=38.14  Aligned_cols=37  Identities=11%  Similarity=0.244  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEcCC-C--cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAG-N--SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G-~--sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++||+|+|.|++ .  .|..+|..|++.+.+|.++.|+.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            4679999999974 4  79999999999999999988764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=81.33  E-value=1.6  Score=39.00  Aligned_cols=38  Identities=13%  Similarity=0.153  Sum_probs=33.3

Q ss_pred             CCCCCCeEEEEcCC---CcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAG---NSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G---~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..++||+|+|.|++   -.|..+|..|++.+.+|.++.|+.
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            45789999999986   789999999999999999998864

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=81.28  E-value=1.3  Score=40.21  Aligned_cols=38  Identities=21%  Similarity=0.214  Sum_probs=33.8

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++.|++|.|||.|..|..+|..+...+-+|+...|++
T Consensus       140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~  177 (311)
T 2cuk_A          140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTP  177 (311)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCC
Confidence            36789999999999999999999998888898888765

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=81.21  E-value=1.1  Score=40.74  Aligned_cols=35  Identities=31%  Similarity=0.477  Sum_probs=31.2

Q ss_pred             CCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++++|+|.|+ |..|..++..|++.+.+|+++.|++
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~   37 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRS   37 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCC
Confidence            5789999997 9999999999999888999999875

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=81.17  E-value=1.3  Score=41.41  Aligned_cols=37  Identities=24%  Similarity=0.234  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+.+++|+|+|+|..|.-+|..+...+.+|+.+.|++
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4789999999999999999999988877899988764

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=81.13  E-value=0.92  Score=41.21  Aligned_cols=34  Identities=24%  Similarity=0.158  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++|+|||+|..|..+|..++..+-+|++....+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999999999998754

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=81.08  E-value=5  Score=38.03  Aligned_cols=35  Identities=20%  Similarity=0.261  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|.+..|||.|..|.=+|..|++.+.+|+.+.+.+
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~   44 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ   44 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47899999999999999999999999999998875

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=81.06  E-value=1.7  Score=38.85  Aligned_cols=41  Identities=17%  Similarity=0.255  Sum_probs=33.7

Q ss_pred             CCCCCCCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         129 KSPDQIRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       129 ~~~~~~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .....+++|+|+|.|+ |..|..+|..|++.+.+|+++.|+.
T Consensus        11 ~~~~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~   52 (303)
T 1yxm_A           11 LAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   52 (303)
T ss_dssp             BCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCcCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3344678999999984 6778999999999988999998864

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=81.02  E-value=1.1  Score=39.28  Aligned_cols=35  Identities=17%  Similarity=0.297  Sum_probs=30.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEecc
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRR  168 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~  168 (396)
                      +++++|+|||.|..|.++|..|+..+ .+++++.+.
T Consensus        26 l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           26 LLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             HhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46789999999999999999999874 578888664

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=80.96  E-value=1  Score=40.41  Aligned_cols=33  Identities=30%  Similarity=0.346  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++|.|||+|..|.-+|..+++.+.+|+++.|++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            689999999999999999999888999998864

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=80.89  E-value=1.4  Score=39.25  Aligned_cols=34  Identities=21%  Similarity=0.440  Sum_probs=30.6

Q ss_pred             CCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +++|+|.|+ |..|..++..|++.+.+|+++.|++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            578999996 9999999999999888999999875

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=80.88  E-value=1.8  Score=37.83  Aligned_cols=37  Identities=16%  Similarity=0.283  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEcCC---CcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAG---NSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G---~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++||.++|-|++   -.|..+|..|++.+.+|.+..|+.
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~   42 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKE   42 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            4789999999964   478899999999999999999875

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=80.87  E-value=1  Score=42.44  Aligned_cols=36  Identities=25%  Similarity=0.287  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +.+++|+|+|+|..|.-++..+...+.+|+++.|++
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            568999999999999999999888877899998875

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=80.78  E-value=1.2  Score=39.90  Aligned_cols=37  Identities=22%  Similarity=0.227  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         134 IRNKRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       134 ~~~k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      ..+++|+|.|+ |..|..++..|++.+.+|+.+.|++.
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            35789999998 99999999999999899999999763

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=80.73  E-value=1.4  Score=40.33  Aligned_cols=38  Identities=26%  Similarity=0.282  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++.||+|.|||.|..|..+|..+...+-+|+...|++
T Consensus       167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~  204 (340)
T 4dgs_A          167 HSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRST  204 (340)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            46789999999999999999999999888898888765

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=80.71  E-value=1.3  Score=41.20  Aligned_cols=37  Identities=19%  Similarity=0.194  Sum_probs=33.0

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+++++|+|+|+|..|..+|..+...+.+|+++.|++
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4678999999999999999999998888999998864

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=80.62  E-value=0.96  Score=42.09  Aligned_cols=36  Identities=22%  Similarity=0.285  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+++|+|||+|..|.-+|..+...+.+|+++.|++
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            367899999999999999999988888999998875

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=80.62  E-value=1.6  Score=38.64  Aligned_cols=35  Identities=23%  Similarity=0.325  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      .+++|+|+|+|..|--++..|+..+ ++|+++.|+.
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~  153 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV  153 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4689999999999999999998875 5899999874

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=80.61  E-value=0.8  Score=40.66  Aligned_cols=37  Identities=24%  Similarity=0.444  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+++++|+|||+|..|.-+|..|.+.+.+|+++.|++
T Consensus       126 ~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          126 EVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             TGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4678999999999999999999988766888888764

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=80.52  E-value=1  Score=45.39  Aligned_cols=32  Identities=31%  Similarity=0.540  Sum_probs=29.0

Q ss_pred             eEEEEcCCCcHHHHHHHHh---c-CCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDAS---H-HSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~---~-~~~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+=+|..++   + .+.+|.++.+.+
T Consensus        24 DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~   59 (643)
T 1jnr_A           24 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   59 (643)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence            6999999999999999999   5 778999999865

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=80.50  E-value=1.4  Score=40.13  Aligned_cols=38  Identities=29%  Similarity=0.550  Sum_probs=34.4

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++.||+|.|||.|..|..+|..+...+-+|+...|++
T Consensus       136 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~  173 (324)
T 3hg7_A          136 QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSG  173 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCCh
Confidence            46789999999999999999999999988999888765

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=80.35  E-value=1.1  Score=41.65  Aligned_cols=37  Identities=27%  Similarity=0.413  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      .+.+.+|+|+|+|..|.-+|..|...+ ++|+++.|++
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~G  226 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG  226 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            457789999999999999999988865 5899999975

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=80.33  E-value=1.4  Score=41.24  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ...+|+|+|+|+|.+|..++..+.+.+-+|.++...+
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            3578999999999999999999999998888887653

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=80.31  E-value=1.3  Score=37.68  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=29.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..++|+|||+|..|.-+|..|++.+.+|+++.|++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34689999999999999999998888899988864

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=80.29  E-value=0.79  Score=38.95  Aligned_cols=32  Identities=13%  Similarity=0.194  Sum_probs=29.6

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|+|+|..|..+|..|.+.+.+|+++.+.+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            69999999999999999999989999999865

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=80.15  E-value=1.3  Score=40.95  Aligned_cols=33  Identities=21%  Similarity=0.218  Sum_probs=29.9

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      |+|+|+|||..|.+++..+.+.+-+|+++...+
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~   34 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNP   34 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            799999999999999999999999999987654

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=80.10  E-value=1.2  Score=42.96  Aligned_cols=38  Identities=21%  Similarity=0.185  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+.||+|+|||.|..|..+|..+...+.+|+...|.+
T Consensus       273 ~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~  310 (494)
T 3d64_A          273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDP  310 (494)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCH
T ss_pred             cccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            35789999999999999999999999988999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	396
d2gv8a2	107	c.3.1.5 (A:181-287) Flavin-dependent monoxygenase	2e-14
d1w4xa2	235	c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T	1e-10
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	4e-09
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	4e-08
d1ps9a2	162	c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t	7e-06
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	5e-04

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 66.6 bits (162), Expect = 2e-14
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 113 NYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHY 172
            Y+    G +LHS  ++ P+    + VLVVG  +S  D+    +  ++   + +  G   
Sbjct: 9   EYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD 68

Query: 173 YP 174
             
Sbjct: 69  IQ 70

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 59.0 bits (141), Expect = 1e-10
 Identities = 30/236 (12%), Positives = 70/236 (29%), Gaps = 65/236 (27%)

Query: 108 VARYPNYSGY--FSGEILHSMDY-KSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYH 164
           V + PN+ G   F+G + H+ ++   P     +RV V+G G+SG  ++   +  + +++ 
Sbjct: 1   VPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFV 60

Query: 165 STRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKP-- 222
             R  +   P                     +EE+        +  G         +   
Sbjct: 61  FQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELV 120

Query: 223 -------------------------------------------------DHPLDAAHPIM 233
                                                            +  +   +P  
Sbjct: 121 ETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGYPFG 180

Query: 234 NSQILYHIGHGDILPKD----------DIKNLNGNIVHFVDDTHIEVDTIIYATGY 279
             +++  I + ++  +D           I+ +    V    +   E+D+++ ATG+
Sbjct: 181 TKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRT-SEREYELDSLVLATGF 235

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 55.0 bits (131), Expect = 4e-09
 Identities = 28/179 (15%), Positives = 51/179 (28%), Gaps = 30/179 (16%)

Query: 17  RVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN 76
            +Y  L   +P       D         +P+   + +Y R YA+    +      T+V++
Sbjct: 81  PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIK--LATDVLD 138

Query: 77  LEQYEDIWEVELSNGKKKK------YDFIAVCNGAQRVARYPNYSGY------------- 117
           +E+ +  W V     K         +D +++CNG   V                      
Sbjct: 139 IEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSPET 198

Query: 118 --------FSGEILHSMDYKSPDQI-RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167
                         H      P        + VV    S    A  A   S ++   ++
Sbjct: 199 KLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSK 257

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 51.8 bits (123), Expect = 4e-08
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 11/119 (9%)

Query: 2   ESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMPDNYPVYP----NHSMMLDYLRS 57
             D+GGVW         YP                        +     +   +L Y+  
Sbjct: 39  AGDVGGVWYW-----NRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEILRYINF 93

Query: 58  YAKKFDVYNHSIFNTEVINLE--QYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNY 114
            A KFD+ +   F+T V      +  + W V+ ++G + +  ++ + +G    A     
Sbjct: 94  VADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGAL 152

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 43.7 bits (102), Expect = 7e-06
 Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 17/174 (9%)

Query: 108 VARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR 167
           V R P   G    ++L  +D          +V ++G G  G D A+  S   E    +  
Sbjct: 1   VPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIA 60

Query: 168 RGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLD 227
                   F +       + Q G       +     +Q+        +     KP   L 
Sbjct: 61  G-------FCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIV------MLQRKASKPGQGLG 107

Query: 228 AAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTH---IEVDTIIYATG 278
                ++   L   G   ++P    + ++ + +H V +     + VD ++   G
Sbjct: 108 KTTGWIHRTTLLSRG-VKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAG 160

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 30/211 (14%), Positives = 53/211 (25%), Gaps = 16/211 (7%)

Query: 136 NKRVLVVGAGNSGCDIAVDASHH---------SEKVYHSTRRGYHYYPKFIDGKPTPQWM 186
             R+ VVG   SG   A+              S +       G    P          ++
Sbjct: 4   TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQP------ELVHYL 57

Query: 187 LQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDI 246
           L+ G +  S     + ++ V  L G               D+ +  +         H   
Sbjct: 58  LEQGVELDSISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSK 117

Query: 247 LPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWKLGIPDLFIHIAP 306
                 ++     + F D T  E + +I A G                  +    + I  
Sbjct: 118 CLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKRLLGIETVDRMVHGRVLLIGD 177

Query: 307 RNLDNIFFFGFVNAAAGLGDGLRLQGQFIRS 337
             +           A    D   L   F ++
Sbjct: 178 AAVTPRPHAA-AGGAKASDDARTLAEVFTKN 207

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	396
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.93
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	99.84
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.77
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.74
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.51
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.5
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.5
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.45
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.41
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.38
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.29
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.29
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.29
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.26
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.24
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.17
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.13
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.11
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.08
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.08
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.08
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.03
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.03
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.03
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.0
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.97
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.97
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.96
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.96
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.92
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.92
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.91
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.89
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.88
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.87
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.87
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.84
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.83
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.76
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.72
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.69
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.67
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.67
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.62
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.62
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.61
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.59
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.59
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.51
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.46
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.46
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.45
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.39
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.1
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.03
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.01
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	97.85
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	97.84
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	97.81
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	97.8
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.74
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.72
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.65
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	97.64
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.6
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.56
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.47
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	97.44
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.29
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	97.29
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.28
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	97.28
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.25
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.22
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	97.19
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.15
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.91
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.81
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.8
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.79
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.71
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.71
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	96.71
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.7
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.6
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.58
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.5
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	96.47
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.36
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	96.31
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.23
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.22
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.19
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.17
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.07
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.04
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.0
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.98
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.9
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.86
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	95.61
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.53
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.47
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.45
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.43
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.4
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	95.38
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	95.31
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.31
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.98
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	94.77
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.66
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.56
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.06
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.02
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.93
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	93.84
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.7
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	93.7
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	93.67
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.64
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.55
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	93.25
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	93.12
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	93.0
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	92.98
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	92.9
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.88
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	92.81
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	92.78
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	92.68
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	92.64
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	92.6
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	92.53
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	92.4
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	92.34
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	92.24
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	92.21
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	92.07
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	92.02
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	91.77
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.66
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.59
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	91.54
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	91.47
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.32
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	90.98
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	90.53
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	90.46
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	90.41
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	90.31
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.3
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	90.29
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	90.12
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	89.92
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	89.65
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	89.47
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	89.21
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	89.01
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	88.68
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	88.66
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	88.62
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	88.35
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	87.89
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	87.8
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	87.8
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	87.52
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	87.28
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	87.2
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	87.16
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	87.15
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	87.08
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	86.95
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	86.9
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	86.81
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	86.51
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	86.45
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	86.45
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	86.44
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	86.39
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	86.38
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	85.8
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	85.52
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	85.44
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	85.06
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	84.93
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	84.79
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	84.78
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	84.72
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	84.63
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	84.34
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	84.34
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	84.27
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	84.07
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	84.06
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	84.0
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	83.86
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	83.82
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	83.64
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	83.56
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	83.54
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	83.54
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	83.48
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	82.97
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	82.89
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	82.82
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	82.66
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	82.6
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	82.58
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	82.57
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	82.45
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	82.26
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	82.11
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	81.89
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	81.48
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	81.34
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	80.9
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	80.9
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	80.79
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	80.74
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	80.7
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	80.44

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.93  E-value=1.4e-26  Score=215.90  Aligned_cols=225  Identities=17%  Similarity=0.216  Sum_probs=169.0

Q ss_pred             CCCCccccccCCCC----------------------------CCCCCCceeeecCCCccccCCCCCCCCCCCCCChHHHH
Q psy2343           1 MESDLGGVWNSQAS----------------------------CGRVYPSLHLISPKFNTQVPDYPMPDNYPVYPNHSMML   52 (396)
Q Consensus         1 ~~~~iGG~W~~~~~----------------------------~~~~y~~~~~~~~~~~~~~~~~p~p~~~~~~p~~~~~~   52 (396)
                      |++.+||+|+++..                            .+++|+++++++++.++.|+++++|.+.+.||++.++.
T Consensus        37 k~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  116 (335)
T d2gv8a1          37 RRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQ  116 (335)
T ss_dssp             SSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHH
T ss_pred             CCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccchhhhcCCcHhhhhhhhhcCCcccccCCchHHHH
Confidence            67899999987642                            37799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCc------EEEcCEEEEcccCCCCCCCCCCCC-Ccccceeec
Q psy2343          53 DYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGK------KKKYDFIAVCNGAQRVARYPNYSG-YFSGEILHS  125 (396)
Q Consensus        53 ~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~------~~~~d~vvvAtG~~~~p~~P~~~g-~~~g~~~hs  125 (396)
                      +||+.+++.++.  +|+|||+|++|++++++|+|++.+++      +..||+||+|||+++.|++|.+.+ .|.+     
T Consensus       117 ~yl~~~~~~~~~--~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s~p~~~~~~~~~~p~-----  189 (335)
T d2gv8a1         117 EYQRIYAQPLLP--FIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYTGYLYSVPFPS-----  189 (335)
T ss_dssp             HHHHHHHGGGGG--GEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCCCBCCCCCCHH-----
T ss_pred             HHHHHHHHHhhh--cccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEeeEEEEcccccccceecccccCCCCc-----
Confidence            999999998764  59999999999999999999986532      357999999999999999887543 1100     


Q ss_pred             ccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHH
Q psy2343         126 MDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQ  205 (396)
Q Consensus       126 ~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  205 (396)
                           ...+++++                                                                   
T Consensus       190 -----~~~f~~~~-------------------------------------------------------------------  197 (335)
T d2gv8a1         190 -----LAKLKSPE-------------------------------------------------------------------  197 (335)
T ss_dssp             -----HHSCCSTT-------------------------------------------------------------------
T ss_pred             -----chhcccCc-------------------------------------------------------------------
Confidence                 00000000                                                                   


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEeCCeEEecCCcEecCcEEEEccCCCCCCCC
Q psy2343         206 VFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLNGNIVHFVDDTHIEVDTIIYATGYNRHFPF  285 (396)
Q Consensus       206 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~  285 (396)
                                                                                        ..++.+|       
T Consensus       198 ------------------------------------------------------------------~~~~~~~-------  204 (335)
T d2gv8a1         198 ------------------------------------------------------------------TKLIDDG-------  204 (335)
T ss_dssp             ------------------------------------------------------------------TCCCSSS-------
T ss_pred             ------------------------------------------------------------------cceeccc-------
Confidence                                                                              0000001       


Q ss_pred             CCcccccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccccCCCchhhHHHHhhcCCCccCC
Q psy2343         286 IDKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIRKSKGYLKFLNAKKNDNPDLGQ  365 (396)
Q Consensus       286 l~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~lp~~~~~~~~m~~~~~~~~~~  365 (396)
                               .....+|++++....|+|+|+|.... ...++.+++||.++|+.++|+++||+.    ++|.++.+.+...
T Consensus       205 ---------~~~~~ly~~~~~~~~p~l~f~G~~~~-v~~~~~~e~Qa~~~a~~~~g~~~Lps~----~~m~~~~~~~~~~  270 (335)
T d2gv8a1         205 ---------SHVHNVYQHIFYIPDPTLAFVGLALH-VVPFPTSQAQAAFLARVWSGRLKLPSK----EEQLKWQDELMFS  270 (335)
T ss_dssp             ---------SSCCSEETTTEETTCTTEEESSCCBS-SCHHHHHHHHHHHHHHHHTTSSCCCCH----HHHHHHHHHHHHH
T ss_pred             ---------cceeeeecccccCCCCceEEeeeEEE-EecCCchHHHHHHHHHHHcCCccCCCc----chhhhhhHHHHHh
Confidence                     12346899999999999999998765 346788999999999999999999997    8998885431100


Q ss_pred             CccccCCCceee-eeHHHHHHHHHHhc
Q psy2343         366 DYFIDSHRHLWE-VDFWKFIKCARMYR  391 (396)
Q Consensus       366 ~~~~~~~~~~~~-~~~~~y~~~l~~~~  391 (396)
                      .+......|.+. ..+..|+++|++++
T Consensus       271 ~~~~~~~~~~~~~~~~~~y~~~L~~~~  297 (335)
T d2gv8a1         271 LSGANNMYHSLDYPKDATYINKLHDWC  297 (335)
T ss_dssp             HTTCGGGTTBCTTTHHHHHHHHHHHHH
T ss_pred             hcccCccceecCCchHHHHHHHHHHHH
Confidence            011122334443 24688999998875

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.84  E-value=2.9e-20  Score=163.47  Aligned_cols=74  Identities=23%  Similarity=0.450  Sum_probs=66.7

Q ss_pred             CCCCCCCCC--CcccceeecccCC-CCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCC
Q psy2343         108 VARYPNYSG--YFSGEILHSMDYK-SPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKP  181 (396)
Q Consensus       108 ~p~~P~~~g--~~~g~~~hs~~~~-~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~  181 (396)
                      .|++|++||  .|+|+++||++|. +..+++||+|+|||+|.||+|+|.++++.+++++++.|++.|..|......+
T Consensus         1 vP~iP~~pG~e~F~G~v~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (235)
T d1w4xa2           1 VPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLD   77 (235)
T ss_dssp             CCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCC
T ss_pred             CCCCCCCCChhhCCCcEEecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccceeeeecccCCc
Confidence            489999999  9999999999995 5678999999999999999999999999999999999999998887654433

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.77  E-value=3e-19  Score=136.75  Aligned_cols=59  Identities=27%  Similarity=0.440  Sum_probs=53.7

Q ss_pred             CCCCCC------CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         111 YPNYSG------YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       111 ~P~~~g------~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|.+||      .|+|.++||+.|+++.+|+||+|+|||+|+||+|+|.+|++.+++|+++.|++
T Consensus         1 iP~ipGl~~f~~~~~G~i~Hs~~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2           1 IPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             BCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CcCCCChHHHhccCCccEEECCcCcchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            467777      35699999999999999999999999999999999999999999998888876

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.74  E-value=5.3e-19  Score=160.68  Aligned_cols=111  Identities=20%  Similarity=0.293  Sum_probs=101.0

Q ss_pred             CCCCccccccCCCCCCCCCCceeeecCCCccccCCCCCC----CCCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEE
Q psy2343           1 MESDLGGVWNSQASCGRVYPSLHLISPKFNTQVPDYPMP----DNYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN   76 (396)
Q Consensus         1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~~~~~~p~p----~~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~   76 (396)
                      |+++|||+|+++     .|+++.++++...+.++++|++    .+.+.||+++++.+||+.++++|+|.++|+|+|+|++
T Consensus        38 k~~~iGGtW~~n-----~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~  112 (298)
T d1w4xa1          38 TAGDVGGVWYWN-----RYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTA  112 (298)
T ss_dssp             SSSSSCTHHHHC-----CCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEE
T ss_pred             cCCCcccccccC-----CCCCceeccccccccccccccccCCCCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEE
Confidence            578999999987     5999999999999999988754    4566789999999999999999999999999999999


Q ss_pred             EEEe--CCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC
Q psy2343          77 LEQY--EDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG  116 (396)
Q Consensus        77 v~~~--~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g  116 (396)
                      ++.+  ++.|+|++.++.+.++|+||+|||..+.|.+|.+++
T Consensus       113 ~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~  154 (298)
T d1w4xa1         113 AAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFK  154 (298)
T ss_dssp             EEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHHT
T ss_pred             EEEecCCCceeeccccccccccceEEEeecccccccCCcccc
Confidence            9976  578999999999999999999999999999998776

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.51  E-value=1.4e-14  Score=121.62  Aligned_cols=160  Identities=13%  Similarity=0.088  Sum_probs=100.1

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVD  216 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (396)
                      ++|+|||||.+|+|+|..|.+.+.+|+++.+++.-..|..   .+          .+..     .+...    .  ..+.
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~---~~----------~l~~-----~~~~~----~--~~~~   59 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYD---RP----------PLSK-----DFMAH----G--DAEK   59 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBC---SG----------GGGT-----THHHH----C--CGGG
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchh---hH----------HHhh-----hhhhh----h--hhhh
Confidence            3699999999999999999998777776665542111110   00          0000     00000    0  0000


Q ss_pred             CCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--CeEEecCCcEecCcEEEEccCCCCCCCCCCccc--
Q psy2343         217 YGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEK--  290 (396)
Q Consensus       217 ~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~~--  290 (396)
                      .                   .........|++  ...+++++.  ..+.+.||+++++|.||+|||..|+..++....  
T Consensus        60 ~-------------------~~~~~~~~~i~~~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~  120 (183)
T d1d7ya1          60 I-------------------RLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALAR  120 (183)
T ss_dssp             S-------------------BCCGGGSTTCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCEEECCHHHH
T ss_pred             H-------------------HHHHhhcCCeEEEEeccccccccccceeEecCCcEeeeeeEEEEEEEEcccccccccccc
Confidence            0                   000111123443  346777754  478899999999999999999999876655332  


Q ss_pred             ---ccccCCccccccccccCCCCcEEEEecccCc-----C-----chhhHHHHHHHHHHHHHhc
Q psy2343         291 ---LEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA-----A-----GLGDGLRLQGQFIRSYIQA  341 (396)
Q Consensus       291 ---~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~-----~-----~~~~~ae~qa~~~a~~l~~  341 (396)
                         +.. ++++.+...+ .++.|++|++||+...     +     ..+..|..||+.+|++|..
T Consensus       121 ~~gl~~-~~~I~vd~~~-~ts~~~IyA~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~nil~  182 (183)
T d1d7ya1         121 AAGLAC-DDGIFVDAYG-RTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVD  182 (183)
T ss_dssp             HTTCCB-SSSEECCTTC-BCSSTTEEECGGGEEEECTTTCSEEECCCHHHHHHHHHHHHHHHHC
T ss_pred             eeeEee-CCcEEeccce-eccccccchhhhhhccceeeCCceechhHHHHHHHHHHHHHHHHcC
Confidence               222 3456666554 6889999999998631     1     2467899999999998853

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.50  E-value=3.9e-14  Score=118.87  Aligned_cols=167  Identities=13%  Similarity=0.062  Sum_probs=100.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG  214 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  214 (396)
                      ++++|+|||||.+|+|+|..|.+.+.+|+++.+.+....|....     .+..    .+..                +..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~-----~~~~----~~~~----------------~~~   56 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLP-----PLSK----AYLA----------------GKA   56 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSG-----GGGT----TTTT----------------TCS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhh-----HHHH----HHHH----------------hhh
Confidence            47899999999999999999999988888877665321111100     0000    0000                000


Q ss_pred             CCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEe--CCeEEecCCcEecCcEEEEccCCCCCCCCC---C
Q psy2343         215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFPFI---D  287 (396)
Q Consensus       215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~--~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l---~  287 (396)
                      .           ...........   .....+..  ...+..++  ...+.+.++.++++|.+|+++|.++..|-+   .
T Consensus        57 ~-----------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~  122 (185)
T d1q1ra1          57 T-----------AESLYLRTPDA---YAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELAS  122 (185)
T ss_dssp             C-----------SGGGBSSCHHH---HHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEEEECCHHHH
T ss_pred             h-----------hhhhhhhhhhh---hcccceeeeccceeeeecccccEEEeeceeEEEeeeeeeeeecccCCCCchhHH
Confidence            0           00000000011   11112221  22333343  346888999999999999999988754433   2


Q ss_pred             cccccccCCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHHhcc
Q psy2343         288 KEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       288 ~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      ...+.. ++.+.+.. .+.++.|++|++||+...          ...++.|..||+.+|.+|.|+
T Consensus       123 ~~~~~~-~~~i~Vd~-~~~ts~~~vya~GD~~~~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~G~  185 (185)
T d1q1ra1         123 AAGLQV-DNGIVINE-HMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGK  185 (185)
T ss_dssp             HTTCCB-SSSEECCT-TSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred             hCCccc-cCccccCC-ccccchhhhhcchhhhccccccCCcccchhhHHHHHHHHHHHHHHccCC
Confidence            223333 34555554 557899999999998542          136789999999999999885

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.50  E-value=3.4e-14  Score=117.35  Aligned_cols=159  Identities=14%  Similarity=0.120  Sum_probs=99.9

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDY  217 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (396)
                      ||+|||+|.+|+|+|..|++ ..+|+++.|++..   .+.  .+                   .+.+ .+   .+.... 
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~---~~~--~~-------------------~~~~-~~---~~~~~~-   51 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVP---YYS--KP-------------------MLSH-YI---AGFIPR-   51 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSC---CCC--ST-------------------THHH-HH---TTSSCG-
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccc---ccc--cc-------------------chhh-hh---hhhhhh-
Confidence            89999999999999999976 4589999987632   110  01                   0000 00   000000 


Q ss_pred             CCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC-CeEEecCCcEecCcEEEEccCCCCCCCCCCccccccc
Q psy2343         218 GLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG-NIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEWK  294 (396)
Q Consensus       218 ~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~-~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~~~~~~  294 (396)
                                   ..+.......+....+++  ...++.++. ..+.+.++.++++|.+|+|||..++ +++...+++.+
T Consensus        52 -------------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~i~~D~li~a~G~~~~-~~~~~~gl~~~  117 (167)
T d1xhca1          52 -------------NRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNV-DLARRSGIHTG  117 (167)
T ss_dssp             -------------GGGCSSCHHHHHHHTEEEECSCCEEEEETTTTEEEESSCEEECSEEEECCCEECC-HHHHHTTCCBS
T ss_pred             -------------hhhhHHHHHHHHhccceeeeeccccccccccccccccccccccceeEEEEEecCC-chhhhcCceeC
Confidence                         000000011111113333  346777764 4578888999999999999998764 45554555544


Q ss_pred             CCccccccccccCCCCcEEEEecccCc----CchhhHHHHHHHHHHHHHhcc
Q psy2343         295 LGIPDLFIHIAPRNLDNIFFFGFVNAA----AGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       295 ~~~~~l~~~~~~~~~p~l~~iG~~~~~----~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      + .+.+. ..+.++.|++|++||+...    .+..+.+..||+.+|++|.|+
T Consensus       118 ~-~i~v~-~~~~t~~~~i~aiGD~~~~~~~~~~~~~~a~~~a~~~a~~i~Ge  167 (167)
T d1xhca1         118 R-GILID-DNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGE  167 (167)
T ss_dssp             S-SEECC-TTSBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred             C-ceeec-cccEecCCCeEEeeecccCCCeEEChHHHHHHHHHHHHHHcCCC
Confidence            3 34443 4556889999999998643    235678899999999999874

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.45  E-value=2.9e-13  Score=112.95  Aligned_cols=166  Identities=14%  Similarity=0.109  Sum_probs=101.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGF  212 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  212 (396)
                      +||||+|||||.+|+++|..|.+..  .+|+++.+++.+..+..      ....                    . ....
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~------~~~~--------------------~-~~~~   53 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYL------SNEV--------------------I-GGDR   53 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTT------HHHH--------------------H-HTSS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccc------cccc--------------------c-chhh
Confidence            4899999999999999999999875  47899988874432211      0000                    0 0000


Q ss_pred             CCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe-cCCcceEe--CCeEEecCCcEecCcEEEEccCCCCCCCCCCcc
Q psy2343         213 DGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-KDDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKE  289 (396)
Q Consensus       213 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~-~~~i~~i~--~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~  289 (396)
                      ....              .....   .......+.. ...+..++  ...+.+.+++.+++|.+|+|||.+++.++++..
T Consensus        54 ~~~~--------------~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~  116 (186)
T d1fcda1          54 KLES--------------IKHGY---DGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQR  116 (186)
T ss_dssp             CGGG--------------GEECS---HHHHTTTEEEECCCEEECCTTTTEEEETTSCEEECSEEEECCCEEECCTTSTEE
T ss_pred             hhhh--------------hhhhh---hhccccceeEeeeeeEeeeeccceeecccceeeccceEEEEeccccchhhhhhh
Confidence            0000              00000   0011112332 22222222  345778899999999999999999998888754


Q ss_pred             ccc--------ccCCccccccc-cccCCCCcEEEEecccCcCc---hhhHHHHHHHHHHHHHhcccc
Q psy2343         290 KLE--------WKLGIPDLFIH-IAPRNLDNIFFFGFVNAAAG---LGDGLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       290 ~~~--------~~~~~~~l~~~-~~~~~~p~l~~iG~~~~~~~---~~~~ae~qa~~~a~~l~~~~~  344 (396)
                      ...        .+.....+..+ ...++.|++|++||+....+   ....|..||+.+|++|...++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~~~~~~p~~~~~A~~q~~~~A~ni~~~~~  183 (186)
T d1fcda1         117 AGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANSQGKVAAAAVVVLLK  183 (186)
T ss_dssp             ECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSEECTTCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhheeccCcccccccccceeeeeecccccCceEeccccccCCCCchHhHHHHHHHHHHHHHHHHhc
Confidence            322        12233333333 44577899999999865432   366889999999999876543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.41  E-value=4.4e-14  Score=109.82  Aligned_cols=91  Identities=16%  Similarity=0.192  Sum_probs=66.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDG  214 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  214 (396)
                      .+|+|+|||||.+|+|+|..|++.+.+|+++.|++.. +|+.            ++.         .+.+          
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~-l~~~------------~~~---------~~~~----------   76 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL-MSRA------------APA---------TLAD----------   76 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST-TTTT------------SCH---------HHHH----------
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeecccc-cccc------------CCH---------HHHH----------
Confidence            4799999999999999999999999999999998642 1211            011         1111          


Q ss_pred             CCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeCCeEEecCCcEecCcEEEEccC
Q psy2343         215 VDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGNIVHFVDDTHIEVDTIIYATG  278 (396)
Q Consensus       215 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~~~v~~~dG~~~~~D~VI~aTG  278 (396)
                                           .+.+.+.+..|+  ....|+++.++.|+++||+++++|.||+|||
T Consensus        77 ---------------------~~~~~l~~~GV~i~~~~~v~~~~~~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          77 ---------------------FVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             ---------------------HHHHHHHTTTCEEEESCCEEEEETTEEEETTSCEEECSEEEECSC
T ss_pred             ---------------------HHHHHHHHCCcEEEeCCEEEEEeCCEEEECCCCEEECCEEEEeeC
Confidence                                 111122222333  4567888999999999999999999999998

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.38  E-value=1.8e-12  Score=114.94  Aligned_cols=80  Identities=11%  Similarity=0.020  Sum_probs=64.3

Q ss_pred             ecCCcEecCcEEEEccCCCCCCCCCCcc----------ccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHH
Q psy2343         262 FVDDTHIEVDTIIYATGYNRHFPFIDKE----------KLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRL  330 (396)
Q Consensus       262 ~~dG~~~~~D~VI~aTG~~~~~~~l~~~----------~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~  330 (396)
                      ..+|+++++|.||+|||.+|+.+.++..          +++.+ .+.+.+.+ .+.|+.|+||++||+.....+.+.|..
T Consensus       166 ~~~g~~i~ad~viiAtG~~P~~~~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn~-~~~Ts~~~IyA~GDv~~~~~l~~~A~~  244 (261)
T d1mo9a1         166 EAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNE-YLQTSVPNVYAVGDLIGGPMEMFKARK  244 (261)
T ss_dssp             EETTEEEEBSCEEECCCEECCCCCSTCEECCHHHHHHHTCCBCTTSCBCCCT-TSBCSSTTEEECGGGGCSSCSHHHHHH
T ss_pred             ccccceEeeeeeeeccCCCCCcCcccccccccccccceeeeeccCCEEEeCC-CcccCCCCEEEEEEeCCCcccHHHHHH
Confidence            3478889999999999999998877643          23443 34566654 558999999999999876678889999


Q ss_pred             HHHHHHHHHhcc
Q psy2343         331 QGQFIRSYIQAF  342 (396)
Q Consensus       331 qa~~~a~~l~~~  342 (396)
                      ||+.+|..+.|+
T Consensus       245 ~G~~aa~~i~G~  256 (261)
T d1mo9a1         245 SGCYAARNVMGE  256 (261)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCC
Confidence            999999999886

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=5.8e-13  Score=104.10  Aligned_cols=58  Identities=24%  Similarity=0.271  Sum_probs=53.9

Q ss_pred             CCCC--CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         113 NYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       113 ~~~g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      ++||  +|.|+-+|.|..++...|+||+|+|||+|+||+|.|..|++.+++||+++|++.
T Consensus         2 ~ipge~~~~gkgV~yca~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2           2 GLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             CCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             cCCCHHHhcCCCEEEEEecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            4677  789999999999999889999999999999999999999999999999999874

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=1.5e-12  Score=101.59  Aligned_cols=60  Identities=25%  Similarity=0.236  Sum_probs=55.4

Q ss_pred             CCCCCC--CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         111 YPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       111 ~P~~~g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+++||  +|.|+-+|.|..++...|+||+|+|||+|+||+|.|..|++.+++||+++|++.
T Consensus         3 ~L~ipge~~~~gkGV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2           3 NMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             CCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             cCCCCCHHHhcCCCEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence            356788  899999999999999999999999999999999999999999999999999874

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.8e-12  Score=108.57  Aligned_cols=102  Identities=19%  Similarity=0.243  Sum_probs=73.9

Q ss_pred             cccCCCeEe--cCCcceEe--CCeEEecCCcEecCcEEEEccCCCCCCC-CCCcccccc--cCCccccccccccCCCCcE
Q psy2343         240 HIGHGDILP--KDDIKNLN--GNIVHFVDDTHIEVDTIIYATGYNRHFP-FIDKEKLEW--KLGIPDLFIHIAPRNLDNI  312 (396)
Q Consensus       240 ~i~~g~i~~--~~~i~~i~--~~~v~~~dG~~~~~D~VI~aTG~~~~~~-~l~~~~~~~--~~~~~~l~~~~~~~~~p~l  312 (396)
                      .+.+..|++  ...|++++  .+.|.++||+++++|.+|+|||..+..+ +.....++.  +.+.+.+..++ .++ |+|
T Consensus        92 ~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd~~l-~~~-~~V  169 (213)
T d1m6ia1          92 HIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAEL-QAR-SNI  169 (213)
T ss_dssp             TSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECCTTC-EEE-TTE
T ss_pred             HHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhhHhc-CcC-Cce
Confidence            344455665  35788886  4579999999999999999999775543 434444443  23566666665 455 999


Q ss_pred             EEEecccCc---------CchhhHHHHHHHHHHHHHhccc
Q psy2343         313 FFFGFVNAA---------AGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       313 ~~iG~~~~~---------~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      |++||+...         ...++.|..|||.+|++|.|..
T Consensus       170 yA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g~~  209 (213)
T d1m6ia1         170 WVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA  209 (213)
T ss_dssp             EECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred             EEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcCCC
Confidence            999998532         1356789999999999999874

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.26  E-value=9.8e-12  Score=105.30  Aligned_cols=164  Identities=13%  Similarity=0.179  Sum_probs=96.7

Q ss_pred             eEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGV  215 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  215 (396)
                      ||+|||||.+|+|+|..|.+.  ..+|+++.|.+...   +.   +.     .+|..              +   .+...
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~---~~---~~-----~~~~~--------------l---~~~~~   53 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS---FL---SA-----GMQLY--------------L---EGKVK   53 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS---BC---GG-----GHHHH--------------H---TTSSC
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc---cc---cc-----Ccchh--------------h---ccccc
Confidence            699999999999999999886  44689998865210   00   00     00000              0   00000


Q ss_pred             CCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeC--CeEEe---cCCcE--ecCcEEEEccCCCCCC---
Q psy2343         216 DYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNG--NIVHF---VDDTH--IEVDTIIYATGYNRHF---  283 (396)
Q Consensus       216 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~--~~v~~---~dG~~--~~~D~VI~aTG~~~~~---  283 (396)
                      ..             ..+.....+.+...+|++  ...|.+++.  +.|.+   .+|+.  +++|.+|+|||..+..   
T Consensus        54 ~~-------------~~~~~~~~~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g  120 (198)
T d1nhpa1          54 DV-------------NSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDG  120 (198)
T ss_dssp             CG-------------GGSBSCCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCC
T ss_pred             ch-------------HHHHHhhHHHHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeecccc
Confidence            00             000000112222234543  456778864  45654   34543  7899999999987542   


Q ss_pred             -----CCCCcccccc-cCCccccccccccCCCCcEEEEecccCc----------CchhhHHHHHHHHHHHHHhcccc
Q psy2343         284 -----PFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAA----------AGLGDGLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       284 -----~~l~~~~~~~-~~~~~~l~~~~~~~~~p~l~~iG~~~~~----------~~~~~~ae~qa~~~a~~l~~~~~  344 (396)
                           .++.. .+.. +.+.+.+. ..+.++.|+||++||+...          ...+..|..||+.+|++|.+..+
T Consensus       121 ~~~~~~~~~~-~~~~~~~G~i~vd-~~~~T~~~~IyA~GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~~  195 (198)
T d1nhpa1         121 VRPNTAWLKG-TLELHPNGLIKTD-EYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK  195 (198)
T ss_dssp             EEESCGGGTT-TSCBCTTSCBCCC-TTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCC
T ss_pred             cccccccccc-cceeccCCceecC-CcccccccceEEecceeecccccCCCcccccHHHHHHHHHHHHHHhhCCCCC
Confidence                 23332 2222 33445554 4567899999999998642          12456788999999998877654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.24  E-value=2e-13  Score=106.39  Aligned_cols=114  Identities=18%  Similarity=0.194  Sum_probs=74.6

Q ss_pred             CCCCCCCCCCcccceeecccCCCCCCC-----CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCCh
Q psy2343         108 VARYPNYSGYFSGEILHSMDYKSPDQI-----RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPT  182 (396)
Q Consensus       108 ~p~~P~~~g~~~g~~~hs~~~~~~~~~-----~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~  182 (396)
                      +|+.|++||.  ..++++.++.+...+     .+|+|+|||||.+|+|+|..|++.+.+|+++.|.+.. ++     .+ 
T Consensus         1 R~r~p~ipG~--e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l-~~-----~d-   71 (122)
T d1xhca2           1 RAREPQIKGK--EYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF-LG-----LD-   71 (122)
T ss_dssp             EECCCCSBTG--GGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC-TT-----CC-
T ss_pred             CCCCcCCCCc--cceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccc-cC-----CC-
Confidence            3678889982  124444333222211     3589999999999999999999999999999998642 11     11 


Q ss_pred             hHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcceEeCCeE
Q psy2343         183 PQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIKNLNGNIV  260 (396)
Q Consensus       183 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~~i~~~~v  260 (396)
                              .         .+.+.                               +.+.+.+..|++  ...+++++++++
T Consensus        72 --------~---------~~~~~-------------------------------~~~~l~~~GV~~~~~~~v~~~~~~~v  103 (122)
T d1xhca2          72 --------E---------ELSNM-------------------------------IKDMLEETGVKFFLNSELLEANEEGV  103 (122)
T ss_dssp             --------H---------HHHHH-------------------------------HHHHHHHTTEEEECSCCEEEECSSEE
T ss_pred             --------H---------HHHHH-------------------------------HHHHHHHCCcEEEeCCEEEEEeCCEE
Confidence                    0         11111                               111111223454  456888888776


Q ss_pred             EecCCcEecCcEEEEccCC
Q psy2343         261 HFVDDTHIEVDTIIYATGY  279 (396)
Q Consensus       261 ~~~dG~~~~~D~VI~aTG~  279 (396)
                       +.+++.+++|.||+|||-
T Consensus       104 -~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2         104 -LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             -EETTEEEECSCEEEECCE
T ss_pred             -EeCCCEEECCEEEEEEEe
Confidence             567888999999999994

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.17  E-value=1e-11  Score=95.56  Aligned_cols=55  Identities=16%  Similarity=0.256  Sum_probs=44.4

Q ss_pred             CCCCCC-CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         111 YPNYSG-YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       111 ~P~~~g-~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      +|++|| +.   ++++.++-+..+  .|+|+|||||.+|+|+|..+++.+.+|+++.|++.
T Consensus         1 ~P~IpG~e~---~~ts~~~~~l~~--p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2           1 FPPVKGIEN---TISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             CCSCTTGGG---CEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CcccCCHhH---cCchhHHhccCC--CCEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            578888 32   456655544433  68999999999999999999999999999999864

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.13  E-value=1.4e-10  Score=99.46  Aligned_cols=78  Identities=21%  Similarity=0.152  Sum_probs=59.1

Q ss_pred             CcEecCcEEEEccCC-----CCCCCCC--CcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHH
Q psy2343         265 DTHIEVDTIIYATGY-----NRHFPFI--DKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIR  336 (396)
Q Consensus       265 G~~~~~D~VI~aTG~-----~~~~~~l--~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a  336 (396)
                      +..+.+|.||+|||.     .|+.+.|  +..+++.+. +.+.+.+ .+.|++|+||++||+.....+...|..+++.+|
T Consensus       132 ~~~~~a~~VIiATGs~~~gr~p~~~~l~l~~~gv~~~~~G~i~vd~-~~~T~v~gi~A~GDv~~g~~l~~~A~~~g~~aa  210 (221)
T d1dxla1         132 NTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVNE-RFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACV  210 (221)
T ss_dssp             CEEEECSEEEECCCEEECCEEECCTTSCCTTTTCCBCSSSCBCCCT-TCBCSSTTEEECSTTSSSCCCHHHHHHHHHHHH
T ss_pred             ccccccceEEEeECCCccCccccCCCCChHhcCceEcCCCcEEeCC-CcccCCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence            345789999999994     4455533  444555543 4555554 568999999999999877778889999999999


Q ss_pred             HHHhccc
Q psy2343         337 SYIQAFI  343 (396)
Q Consensus       337 ~~l~~~~  343 (396)
                      ..|.|+.
T Consensus       211 ~~i~g~~  217 (221)
T d1dxla1         211 EYLAGKV  217 (221)
T ss_dssp             HHHTTSC
T ss_pred             HHHcCCC
Confidence            9998874

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=8.6e-12  Score=102.11  Aligned_cols=58  Identities=22%  Similarity=0.318  Sum_probs=48.7

Q ss_pred             CCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEe
Q psy2343         109 ARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHST  166 (396)
Q Consensus       109 p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~  166 (396)
                      |+.|+|||.....++|+.++.......||+|+|||||++|+|+|..+++.+.+++.+.
T Consensus         2 Pr~p~IpG~d~~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~   59 (162)
T d1ps9a2           2 PRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNI   59 (162)
T ss_dssp             ECCCCCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCH
T ss_pred             CCCCCCCCCCCCCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeH
Confidence            7889999955566899888887777889999999999999999999999876544433

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.08  E-value=3.1e-10  Score=97.44  Aligned_cols=81  Identities=20%  Similarity=0.235  Sum_probs=60.1

Q ss_pred             cCCcEecCcEEEEccCCCCCC-CC---CCc-----ccccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHHH
Q psy2343         263 VDDTHIEVDTIIYATGYNRHF-PF---IDK-----EKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQ  333 (396)
Q Consensus       263 ~dG~~~~~D~VI~aTG~~~~~-~~---l~~-----~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~  333 (396)
                      .++..+.+|.||+|||.+|.. |.   ...     ..++.+++.+.+.++ +.|+.|+||++||+.....+.+.+..|++
T Consensus       128 ~~~~~i~a~~viiAtG~~p~~lp~~~~~~~~~~~~~~~~~~~g~i~vd~~-~~T~~~~I~A~GDv~~~~~l~~~a~~~g~  206 (220)
T d1lvla1         128 VDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDER-CQTSMHNVWAIGDVAGEPMLAHRAMAQGE  206 (220)
T ss_dssp             ETTEEEECSEEEECCCEEECCBTEEECCSSSSGGGSCCCEETTEECCCTT-CBCSSTTEEECGGGGCSSCCHHHHHHHHH
T ss_pred             ccceeEeeceeeEcCCCCcccccccccccCCcceeeehhhcCCcccccch-hhcCCCCEEEEEEeCCcccchhhhhhhHH
Confidence            455679999999999998753 21   111     112234556666544 58899999999999876678889999999


Q ss_pred             HHHHHHhcccc
Q psy2343         334 FIRSYIQAFIR  344 (396)
Q Consensus       334 ~~a~~l~~~~~  344 (396)
                      .+|..|.|+.+
T Consensus       207 ~~a~~i~G~~~  217 (220)
T d1lvla1         207 MVAEIIAGKAR  217 (220)
T ss_dssp             HHHHHHTTCCC
T ss_pred             HHHHHHcCCCC
Confidence            99999998753

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.08  E-value=4.5e-11  Score=93.32  Aligned_cols=54  Identities=26%  Similarity=0.250  Sum_probs=50.1

Q ss_pred             CcccceeecccCCCCC--CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         117 YFSGEILHSMDYKSPD--QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       117 ~~~g~~~hs~~~~~~~--~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .|.|+-+|.|..|+..  -|+||+|+|||+|+||+|.|..|++.+++||+++|++.
T Consensus        13 ~f~gkGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   68 (130)
T d1vdca2          13 GFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDA   68 (130)
T ss_dssp             CCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             cccCCcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccc
Confidence            5889999999999863  79999999999999999999999999999999999874

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=2.9e-10  Score=87.13  Aligned_cols=35  Identities=26%  Similarity=0.185  Sum_probs=32.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .|+|+|||+|.+|+|+|..+++.+.+|+++.|.+.
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            58999999999999999999999999999999864

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.03  E-value=7.5e-11  Score=92.83  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=33.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+|+|+|||||.+|+|+|..+++.+.+|+++.+.+.
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence            479999999999999999999999999999999874

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.03  E-value=2.9e-10  Score=97.58  Aligned_cols=78  Identities=15%  Similarity=0.185  Sum_probs=60.2

Q ss_pred             CcEecCcEEEEcc--------CCCCCCCCC--Cccccccc-CCccccccccccCCCCcEEEEecccCcCchhhHHHHHHH
Q psy2343         265 DTHIEVDTIIYAT--------GYNRHFPFI--DKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQ  333 (396)
Q Consensus       265 G~~~~~D~VI~aT--------G~~~~~~~l--~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~  333 (396)
                      +..+.+|.+|+|+        |.+|+...|  +..+++.+ .+.+.+++ .+.|+.|+||++||+.....+.+.|..|++
T Consensus       129 ~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~l~~~gv~~~~~G~I~vd~-~~~T~~~gvyA~GDv~~~~~~~~~A~~~g~  207 (223)
T d1ebda1         129 AQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQ-QCRTSVPNIFAIGDIVPGPALAHKASYEGK  207 (223)
T ss_dssp             EEEEECSEEEECCCEEECCBSCEEESCSSSSTTTTTCCBCTTSCBCCCT-TCBCSSTTEEECGGGSSSCCCHHHHHHHHH
T ss_pred             ceEEecccEEEEcCCCccccccceecCCCCChHhcCceECCCCCEeECC-CCCCCCCCEEEEeccCCCcccHHHHHHHHH
Confidence            3457899999986        777776654  44456654 35566665 568999999999999877777889999999


Q ss_pred             HHHHHHhccc
Q psy2343         334 FIRSYIQAFI  343 (396)
Q Consensus       334 ~~a~~l~~~~  343 (396)
                      .+|..+.|+-
T Consensus       208 ~aa~~i~g~~  217 (223)
T d1ebda1         208 VAAEAIAGHP  217 (223)
T ss_dssp             HHHHHHTSCC
T ss_pred             HHHHHHcCCC
Confidence            9999999873

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.03  E-value=7.9e-10  Score=95.78  Aligned_cols=86  Identities=13%  Similarity=0.066  Sum_probs=63.4

Q ss_pred             EEecCCcE--ecCcEEEEccCCCCCCCC-----------CCcccccccC-CccccccccccCCCCcEEEEecccCcCchh
Q psy2343         260 VHFVDDTH--IEVDTIIYATGYNRHFPF-----------IDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLG  325 (396)
Q Consensus       260 v~~~dG~~--~~~D~VI~aTG~~~~~~~-----------l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~  325 (396)
                      +...||+.  +++|.||+|||.++..+.           |+...++.++ +.+.+++ .+.|+.|+||++||+.....+.
T Consensus       132 v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~-~~~T~~~gIyA~GDv~~~~~l~  210 (233)
T d1xdia1         132 ATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQLGRGNYLTVDR-VSRTLATGIYAAGDCTGLLPLA  210 (233)
T ss_dssp             EECTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCCCBTTTBCCCCS-SSBCSSTTEEECSGGGTSCSCH
T ss_pred             EEecCCceeeeecceeeeecCcccccccccccccccccccchhhhcccCCCcCCcCC-CcccCCCCEEEEEEeCCCchhH
Confidence            34457764  899999999999876532           2222233433 4466654 4689999999999997766678


Q ss_pred             hHHHHHHHHHHHHHhccccCC
Q psy2343         326 DGLRLQGQFIRSYIQAFIRKS  346 (396)
Q Consensus       326 ~~ae~qa~~~a~~l~~~~~lp  346 (396)
                      +.|..|++.+|.++.|.-..|
T Consensus       211 ~~A~~~g~~aa~~~~g~~~~p  231 (233)
T d1xdia1         211 SVAAMQGRIAMYHALGEGVSP  231 (233)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCCC
Confidence            899999999999999875555

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.00  E-value=2.3e-09  Score=96.22  Aligned_cols=178  Identities=16%  Similarity=0.216  Sum_probs=108.5

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC----ceeecCC----------CCCCChhHHH-Hh--hCccccChHH
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG----YHYYPKF----------IDGKPTPQWM-LQ--LGNKFSSKEE  198 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~----~~~~p~~----------~~~~~~~~~~-~~--~p~~~~~~~~  198 (396)
                      .-+|+|||+|.||+-+|..|.+.+.+|+++.+.+    .|...++          ....+.+... ..  .+..+....+
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e   86 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPE   86 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHH
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccch
Confidence            4579999999999999999999999999999864    2322111          0000000000 00  0111111111


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEecCCcceEe--CC----eEEecCCcEecCcE
Q psy2343         199 TMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILPKDDIKNLN--GN----IVHFVDDTHIEVDT  272 (396)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~~~~i~~i~--~~----~v~~~dG~~~~~D~  272 (396)
                      .....+...+..       +                       ...+|...+.|+++.  +.    .|...++.+..+|.
T Consensus        87 ~~~Yl~~~a~~~-------~-----------------------L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~  136 (298)
T d1w4xa1          87 ILRYINFVADKF-------D-----------------------LRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARY  136 (298)
T ss_dssp             HHHHHHHHHHHT-------T-----------------------GGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEE
T ss_pred             HHHHHHHHHHHc-------C-----------------------CcccccCCcEEEEEEEecCCCceeeccccccccccce
Confidence            222222222110       0                       012466667777664  22    48888999999999


Q ss_pred             EEEccCCCCC--CCCCC------cccc----cccCCccccccccccCCCCcEEEEecccCc---CchhhHHHHHHHHHHH
Q psy2343         273 IIYATGYNRH--FPFID------KEKL----EWKLGIPDLFIHIAPRNLDNIFFFGFVNAA---AGLGDGLRLQGQFIRS  337 (396)
Q Consensus       273 VI~aTG~~~~--~~~l~------~~~~----~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~---~~~~~~ae~qa~~~a~  337 (396)
                      ||.|||+-..  .|.+.      ..+.    .|++ .+..|..+..++.||+|+++-+++.   ++....+|.|++++++
T Consensus       137 ~i~atG~ls~~~~p~~~~~~i~g~~g~~l~~~W~~-~p~ty~G~~v~gfPN~f~~~Gp~s~~~~~~~~~~~e~q~~~i~~  215 (298)
T d1w4xa1         137 LIMASGQLSDALTGALFKIDIRGVGNVALKEKWAA-GPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTD  215 (298)
T ss_dssp             EEECCCSCCCCTTHHHHTSEEECGGGCBHHHHTTT-SCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHH
T ss_pred             EEEeecccccccCCcccccccccCCCeeehhhchh-hHHHHHHHhcCCCCeEEEecCCCCccccccHHHHHHHHHHHHHH
Confidence            9999997543  22111      1111    2443 5789999999999999999766543   3566789999999999


Q ss_pred             HHhcccc
Q psy2343         338 YIQAFIR  344 (396)
Q Consensus       338 ~l~~~~~  344 (396)
                      .|+...+
T Consensus       216 ~i~~~~~  222 (298)
T d1w4xa1         216 HIAYMFK  222 (298)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8865443

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.9e-09  Score=92.21  Aligned_cols=77  Identities=18%  Similarity=0.110  Sum_probs=57.5

Q ss_pred             cEecCcEEEEccCCCCCCCC----------CCcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHH
Q psy2343         266 THIEVDTIIYATGYNRHFPF----------IDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQF  334 (396)
Q Consensus       266 ~~~~~D~VI~aTG~~~~~~~----------l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~  334 (396)
                      ..+.++.++++||..|..|.          |+...++.+. +.+.+.++ +.|+.|+||++||+.....+.+.|..|++.
T Consensus       128 ~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L~~~gv~~~~~G~I~vd~~-~~T~~~gvyA~GDv~~~~~l~~~A~~~G~~  206 (221)
T d3grsa1         128 KKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDEF-QNTNVKGIYAVGDVCGKALLTPVAIAAGRK  206 (221)
T ss_dssp             EEEECSCEEECCCEEECCCCTEEESCTTTTGGGTTCCBCTTSCBCCCTT-CBCSSTTEEECGGGGTSSCCHHHHHHHHHH
T ss_pred             cccccceeEEecCccccCCCccccCCCCcCchhcCcEECCCccEEeCCC-ccccCCcEEEEEEccCCcCcHHHHHHHHHH
Confidence            45789999999998776542          3333344433 44555544 689999999999998766678899999999


Q ss_pred             HHHHHhccc
Q psy2343         335 IRSYIQAFI  343 (396)
Q Consensus       335 ~a~~l~~~~  343 (396)
                      +|+.+.+..
T Consensus       207 aa~~~~~~~  215 (221)
T d3grsa1         207 LAHRLFEYK  215 (221)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHHHcCCC
Confidence            999887753

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.97  E-value=1.6e-10  Score=88.90  Aligned_cols=90  Identities=20%  Similarity=0.219  Sum_probs=61.1

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcC---CCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHH---SEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGF  212 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~---~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  212 (396)
                      .|+++|||||.+|+|+|..+++.   +.+|+++.|.+.. +|..    .              +    .+.         
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i-l~~~----d--------------~----~~~---------   65 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI-LRGF----D--------------S----ELR---------   65 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS-STTS----C--------------H----HHH---------
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccccc-cccc----c--------------c----hhh---------
Confidence            58999999999999999876654   6789999997632 1211    0              0    111         


Q ss_pred             CCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeCC-----eEEecCCcEecCcEEEEccCC
Q psy2343         213 DGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGN-----IVHFVDDTHIEVDTIIYATGY  279 (396)
Q Consensus       213 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~~-----~v~~~dG~~~~~D~VI~aTG~  279 (396)
                                            ..+.+.+.+..|+  ....|++++.+     .+.++||+++++|.||+|||.
T Consensus        66 ----------------------~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          66 ----------------------KQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             ----------------------HHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             ----------------------HHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence                                  1111222222344  45678888632     488999999999999999994

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.96  E-value=1.2e-10  Score=89.22  Aligned_cols=51  Identities=20%  Similarity=0.381  Sum_probs=41.6

Q ss_pred             ccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         119 SGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       119 ~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .++++.+.+.-..... .|+++|||||..|+|+|..+++.+.+||++.|.+.
T Consensus         5 g~~~~~s~~~l~~~~~-p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2           5 GGPVISSTEALAPKAL-PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             BTTEECHHHHTCCSSC-CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCcEECChHHhCcccC-CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            3456766665554433 58999999999999999999999999999999874

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.8e-10  Score=91.15  Aligned_cols=91  Identities=16%  Similarity=0.280  Sum_probs=61.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhc----CCCcEEEEeccCceeecCCCCCCChhHHHHhhCccccChHHHHHHHHHHHHHh
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASH----HSEKVYHSTRRGYHYYPKFIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLA  210 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~----~~~~V~l~~r~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  210 (396)
                      .+|+++|||||.+|+|+|.+|++    .+.+|+++.+.+.. +++.            +|.         .+.+.     
T Consensus        36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~-l~~~------------~~~---------~~~~~-----   88 (137)
T d1m6ia2          36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN-MGKI------------LPE---------YLSNW-----   88 (137)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST-TTTT------------SCH---------HHHHH-----
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC-Cccc------------CCH---------HHHHH-----
Confidence            37899999999999999999975    36799999987632 1111            111         11111     


Q ss_pred             cCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeE--ecCCcceEeCC----eEEecCCcEecCcEEEEccC
Q psy2343         211 GFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDIL--PKDDIKNLNGN----IVHFVDDTHIEVDTIIYATG  278 (396)
Q Consensus       211 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~--~~~~i~~i~~~----~v~~~dG~~~~~D~VI~aTG  278 (396)
                                                +.+.+.+-.|+  ....|++++.+    .|+++||+.+++|.||+|||
T Consensus        89 --------------------------~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          89 --------------------------TMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             --------------------------HHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             --------------------------HHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence                                      11222222344  34577888643    58899999999999999999

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.92  E-value=3.4e-09  Score=88.79  Aligned_cols=166  Identities=16%  Similarity=0.058  Sum_probs=90.1

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceee-cCCCCCCChhHHHHh---hCccccChHHHHHHHHHHHHHhc
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYY-PKFIDGKPTPQWMLQ---LGNKFSSKEETMAYIKQVFKLAG  211 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~-p~~~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~  211 (396)
                      .++|+|||||++|+++|..+++.+.+|.++.+...... +...  .....+...   +|......    .+...+.++  
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----el~~~~~~q--   76 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQ--LTTTTDVENFPGFPEGILGV----ELTDKFRKQ--   76 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCG--GGGCSEECCSTTCTTCEEHH----HHHHHHHHH--
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccc--cccchhhhccccccccccch----HHHHHHHHH--
Confidence            47999999999999999999999999999986542100 0000  000000000   01111010    111111110  


Q ss_pred             CCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe-cCCcceEeCC--e-EEecCCcEecCcEEEEccCCC-----CC
Q psy2343         212 FDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP-KDDIKNLNGN--I-VHFVDDTHIEVDTIIYATGYN-----RH  282 (396)
Q Consensus       212 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~-~~~i~~i~~~--~-v~~~dG~~~~~D~VI~aTG~~-----~~  282 (396)
                                                  ..+. .+.+ ...|..++..  . ....+.....+|.++++||..     |+
T Consensus        77 ----------------------------~~~~-g~~i~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~~~g~~p~  127 (192)
T d1vdca1          77 ----------------------------SERF-GTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPA  127 (192)
T ss_dssp             ----------------------------HHHT-TCEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCEEES
T ss_pred             ----------------------------HHhh-cceeeeeeEEecccccCcEEecccceeeeeeeEEEEeeeeecccCch
Confidence                                        0011 1221 2234454422  1 233455568899999999964     44


Q ss_pred             CCCCCccccccc-CCccccccccccCCCCcEEEEecccCcCc-hhhHHHHHHHHHHHHH
Q psy2343         283 FPFIDKEKLEWK-LGIPDLFIHIAPRNLDNIFFFGFVNAAAG-LGDGLRLQGQFIRSYI  339 (396)
Q Consensus       283 ~~~l~~~~~~~~-~~~~~l~~~~~~~~~p~l~~iG~~~~~~~-~~~~ae~qa~~~a~~l  339 (396)
                      ..++.. .++.+ ++.+.+....+.++.|++|++||+..... ....+..+++.+|..+
T Consensus       128 ~~~~~~-~veld~~G~i~~~~~~~~Ts~~GV~a~GDv~~~~~r~~v~A~g~G~~aA~~~  185 (192)
T d1vdca1         128 TKFLDG-GVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDA  185 (192)
T ss_dssp             CGGGTT-SSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHhcC-ceeecCCCeEEeCCCceEecCCCEEEeeecCCcccceEEEEEechHHHHHHH
Confidence            445553 34443 45566666678899999999999975432 3344555566555444

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.92  E-value=6.7e-10  Score=86.00  Aligned_cols=36  Identities=22%  Similarity=0.229  Sum_probs=33.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+|+|+|||+|.+|+|+|..+++.+.+||++.|.+.
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            578999999999999999999999999999999763

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=2.6e-09  Score=89.25  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++++|+|||||++|++.|..+++.+.+|+++.|..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            46789999999999999999999999999998754

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.89  E-value=5e-10  Score=90.71  Aligned_cols=136  Identities=8%  Similarity=-0.050  Sum_probs=91.2

Q ss_pred             EcccCCCCCCCC-CCCC-Cccc-ceeecccCCCCCCCCCCeEEEE--cCCCcHHHHHHHHhcCCCcEEEEeccCceeecC
Q psy2343         101 VCNGAQRVARYP-NYSG-YFSG-EILHSMDYKSPDQIRNKRVLVV--GAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPK  175 (396)
Q Consensus       101 vAtG~~~~p~~P-~~~g-~~~g-~~~hs~~~~~~~~~~~k~VvVV--G~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~  175 (396)
                      -|||.  .|..| ++|| ...+ .++++.+........+++|+|+  |||..|+|+|..|++.+.+||++.+.+.. ++.
T Consensus         3 ~atG~--~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~-~~~   79 (156)
T d1djqa2           3 NTDGT--NCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA-NYM   79 (156)
T ss_dssp             CSSCC--CTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT-THH
T ss_pred             cCCCC--CCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc-ccc
Confidence            38998  78877 7999 5543 5778777766666678888887  99999999999999999999999987521 110


Q ss_pred             CCCCCChhHHHHhhCccccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccCccCchhhhcccCCCeEe--cCCcc
Q psy2343         176 FIDGKPTPQWMLQLGNKFSSKEETMAYIKQVFKLAGFDGVDYGLKKPDHPLDAAHPIMNSQILYHIGHGDILP--KDDIK  253 (396)
Q Consensus       176 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~g~i~~--~~~i~  253 (396)
                                   +.                                        +.....+.+.+.+..|++  ...+.
T Consensus        80 -------------~~----------------------------------------~~~~~~~~~~l~~~GV~i~~~~~v~  106 (156)
T d1djqa2          80 -------------HF----------------------------------------TLEYPNMMRRLHELHVEELGDHFCS  106 (156)
T ss_dssp             -------------HH----------------------------------------TTCHHHHHHHHHHTTCEEEETEEEE
T ss_pred             -------------cc----------------------------------------hhHHHHHHHHHhhccceEEeccEEE
Confidence                         00                                        001111222222234444  45678


Q ss_pred             eEeCCeEEecCCcEecCcEEEEccCCCCCCCCCCccccc
Q psy2343         254 NLNGNIVHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLE  292 (396)
Q Consensus       254 ~i~~~~v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~~~~  292 (396)
                      +++++++.+.++...+.+.++.++|..++....+...++
T Consensus       107 ~i~~~~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le  145 (156)
T d1djqa2         107 RIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIE  145 (156)
T ss_dssp             EEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEE
T ss_pred             EecCcceEEEeeeccccceeeeeeEEEecccCCccCcEe
Confidence            888888888776666667777777777666655544443

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.88  E-value=2.8e-10  Score=88.28  Aligned_cols=59  Identities=14%  Similarity=0.161  Sum_probs=46.3

Q ss_pred             CCCCCCCCCcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         109 ARYPNYSGYFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       109 p~~P~~~g~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      |++|.+|+  ..+++.+.+..+... ..|+++|||+|..|+|+|..+++.+.+|+++.|++.
T Consensus         2 ~~lP~ip~--~~~i~ts~~~l~l~~-~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2           2 TKLPFIPE--DPRIIDSSGALALKE-VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             CCCSSCCC--CTTEECHHHHTTCCC-CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCCCCCC--CCcEEcHHHhhCccc-cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            55666664  335677766655443 458999999999999999999999999999999863

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.87  E-value=5.2e-10  Score=86.11  Aligned_cols=49  Identities=16%  Similarity=0.085  Sum_probs=41.0

Q ss_pred             ceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         121 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       121 ~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+++|.+..+... ..++++|||+|..|+|+|..+++.+.+|+++.|++.
T Consensus         8 ~v~~s~~~l~l~~-~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2           8 VIVDSTGALDFQN-VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             SEEEHHHHTSCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEchhHhhCccc-CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            4667666655443 458999999999999999999999999999999874

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.87  E-value=1.7e-10  Score=89.30  Aligned_cols=38  Identities=13%  Similarity=0.111  Sum_probs=34.7

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      ...+|+|+|||||.+|+|+|..+++.+.+|+++.|++.
T Consensus        19 ~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          19 YEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             SCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             hCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            44689999999999999999999999999999999863

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=8.8e-09  Score=88.89  Aligned_cols=197  Identities=13%  Similarity=0.070  Sum_probs=102.3

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCceeecCCCCCCChhHH-HHhhCccccChHHHHHHHHHHHHHhcCCCCC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHYYPKFIDGKPTPQW-MLQLGNKFSSKEETMAYIKQVFKLAGFDGVD  216 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~~p~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (396)
                      .|+|||+|..|..+|..+++.+.+|.++.+.+..-. .......-..+ ...+|.....     .. .... ........
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~-~~~~~~GG~c~~~g~~~~k~l~-----~~-~~~~-~~~~~~~~   76 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPL-GTNWGLGGTCVNVGCIPKKLMH-----QA-ALLG-QALKDSRN   76 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTT-CCCCCTTHHHHHHSHHHHHHHH-----HH-HHHH-HHHHHTTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc-ccccccccccccccccchhhhh-----hh-hhhh-hHhhhhhc
Confidence            599999999999999999999999999987542100 00000000000 0012211100     00 0001 11111223


Q ss_pred             CCCCCCCCC-CCccc---------CccCchhhhcccCCCeEecCCcceE-eCCe--EEecCCcE--ecCcEEEEccCCCC
Q psy2343         217 YGLKKPDHP-LDAAH---------PIMNSQILYHIGHGDILPKDDIKNL-NGNI--VHFVDDTH--IEVDTIIYATGYNR  281 (396)
Q Consensus       217 ~~~~~p~~~-~~~~~---------~~~~~~~~~~i~~g~i~~~~~i~~i-~~~~--v~~~dG~~--~~~D~VI~aTG~~~  281 (396)
                      +++...... .....         -.++..+...+...+|++...-..+ ..+.  +...++..  +.++.++++||.+|
T Consensus        77 ~gi~~~~~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p  156 (235)
T d1h6va1          77 YGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERP  156 (235)
T ss_dssp             TTBCCCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEE
T ss_pred             cccccccceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceecccccccccccccccceeecCCCc
Confidence            332111100 00000         0011112222233345443222222 2232  22334443  78999999999988


Q ss_pred             CCCC----------CCccccccc--CCccccccccccCCCCcEEEEecccCcC-chhhHHHHHHHHHHHHHhccc
Q psy2343         282 HFPF----------IDKEKLEWK--LGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       282 ~~~~----------l~~~~~~~~--~~~~~l~~~~~~~~~p~l~~iG~~~~~~-~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      ..+-          ++...++.+  .+.+.+.+. +.|+.|+||++||+.... .+.+.|..|++.+|+.+.|.-
T Consensus       157 ~~~~i~~~~~~~~~l~~~gv~l~~~~g~I~vd~~-~~TsvpgIyA~GDv~~g~~~l~~~A~~eG~~aa~~~~g~~  230 (235)
T d1h6va1         157 RYLGIRDSCTRTIGLETVGVKINEKTGKIPVTDE-EQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGS  230 (235)
T ss_dssp             CCCSSEEESCTTSCCTTTTCCCCSSSCCBCCCTT-SBCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred             eeEEEeeccceeeccccceeeeccccCccccCCc-cccCCCCEEEEEeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence            6432          222233333  245665555 589999999999997543 466789999999999998754

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.83  E-value=5.2e-09  Score=89.67  Aligned_cols=76  Identities=13%  Similarity=0.150  Sum_probs=57.2

Q ss_pred             EecCcEEEEccCCCCCCC---------CCCcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHH
Q psy2343         267 HIEVDTIIYATGYNRHFP---------FIDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIR  336 (396)
Q Consensus       267 ~~~~D~VI~aTG~~~~~~---------~l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a  336 (396)
                      .+.++.+++|||.++...         ++...++..++ +.+.+. ..+.|+.|+||++||+.....+.+.|..+++.+|
T Consensus       140 ~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~~~G~i~vd-~~~~T~vpgiyA~GDv~~g~~l~~~A~~~G~~aa  218 (229)
T d3lada1         140 VLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVD-DYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVA  218 (229)
T ss_dssp             EECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBCTTSCBCCC-TTSBCSSTTEEECGGGSSSCCCHHHHHHHHHHHH
T ss_pred             eeecccccccCCcccccccccccccccchHhcCeeecCCCcEEec-ccccCCCCCEEEEeCCcchHHHHHHHHHHHHHHH
Confidence            377999999999887543         33334445544 445554 4558999999999999776667888999999999


Q ss_pred             HHHhccc
Q psy2343         337 SYIQAFI  343 (396)
Q Consensus       337 ~~l~~~~  343 (396)
                      ..+.|+-
T Consensus       219 ~~i~g~~  225 (229)
T d3lada1         219 ERIAGHK  225 (229)
T ss_dssp             HHHHHCC
T ss_pred             HHHcCCC
Confidence            9998763

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.6e-09  Score=84.05  Aligned_cols=47  Identities=21%  Similarity=0.227  Sum_probs=38.1

Q ss_pred             eecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         123 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       123 ~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      ++|.+....... .|+|+|||+|.+|+|+|..+++.+.+|+++.|++.
T Consensus        10 ~ts~~~~~l~~~-pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          10 ITSDGFFQLEEL-PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             BCHHHHTTCCSC-CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCHHHHhChhhc-CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            445444443333 48999999999999999999999999999999874

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.72  E-value=4.6e-09  Score=80.42  Aligned_cols=36  Identities=25%  Similarity=0.205  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcC---CCcEEEEeccCc
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHH---SEKVYHSTRRGY  170 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~---~~~V~l~~r~~~  170 (396)
                      .+|+++|||||.+|+|+|..+...   ..+|+++.|.+.
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            468999999999999999887765   457999999763

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.69  E-value=3.4e-09  Score=81.19  Aligned_cols=51  Identities=24%  Similarity=0.289  Sum_probs=42.6

Q ss_pred             ccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         119 SGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       119 ~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .++++.+.+...... ..|+|+|||||.+|+|+|..+++.+.+||++.|++.
T Consensus         6 ~~~i~~s~~~l~~~~-~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2           6 SNRILDSTGALNLGE-VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CSSEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCEEChhHhhChhh-cCCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            356777766655543 358999999999999999999999999999999874

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=4.4e-09  Score=81.13  Aligned_cols=49  Identities=22%  Similarity=0.203  Sum_probs=40.4

Q ss_pred             ceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         121 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       121 ~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      ++++|.+..+... ..|+++|||+|..|+|+|..+++.+.+||++.|++.
T Consensus         9 ~v~ts~~~~~l~~-~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2           9 KIVSSTGALSLKE-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             SEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             EEEehHHhhCccc-CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            3666665554443 358999999999999999999999999999999874

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=1.1e-08  Score=87.11  Aligned_cols=83  Identities=17%  Similarity=0.066  Sum_probs=57.0

Q ss_pred             EecCCcEecCcEEEEccCCCCCCCCCCc--------ccccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHH
Q psy2343         261 HFVDDTHIEVDTIIYATGYNRHFPFIDK--------EKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQG  332 (396)
Q Consensus       261 ~~~dG~~~~~D~VI~aTG~~~~~~~l~~--------~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa  332 (396)
                      ...++..+.++.+|+|||.+|..|-++.        ..+..+.......+..+.++.|+||++|+...+.-+.+.+..++
T Consensus       121 ~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G  200 (217)
T d1gesa1         121 LEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAG  200 (217)
T ss_dssp             EEETTEEEEEEEEEECCCEEECCCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHH
T ss_pred             ecCCCceeeeeeeeeecCccccCCCCCCcCCcccccccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHHHHHHHHH
Confidence            3356777899999999998877653331        11222222222234455677899999999987666777888899


Q ss_pred             HHHHHHHhccc
Q psy2343         333 QFIRSYIQAFI  343 (396)
Q Consensus       333 ~~~a~~l~~~~  343 (396)
                      +.++..+.+..
T Consensus       201 ~~v~~~~~~~~  211 (217)
T d1gesa1         201 RRLSERLFNNK  211 (217)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHhCCC
Confidence            99988777664

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.62  E-value=6.6e-08  Score=82.98  Aligned_cols=76  Identities=13%  Similarity=0.084  Sum_probs=54.7

Q ss_pred             ecCcEEEEccCCC-CCC--CCCCcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhccc
Q psy2343         268 IEVDTIIYATGYN-RHF--PFIDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       268 ~~~D~VI~aTG~~-~~~--~~l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      ..+|.+++++|.+ +..  ..++..+++.++ +.+.+.+ .+.|+.|+||++||+.....+.+.|..||+.+|..+.|..
T Consensus       147 ~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~-~~~TsvpgVyAaGDv~~~~~l~~~A~~eG~~Aa~~i~G~~  225 (229)
T d1ojta1         147 VAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDK-QMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHK  225 (229)
T ss_dssp             EEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCT-TSBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred             eecceEEEEecccCCcccccchhhhCccCCCCCCEEcCC-CccCCCCCEEEEEecCCCcchHHHHHHHHHHHHHHHcCCC
Confidence            4566677777655 332  234444555544 5566654 5689999999999998766677889999999999998874


Q ss_pred             c
Q psy2343         344 R  344 (396)
Q Consensus       344 ~  344 (396)
                      .
T Consensus       226 ~  226 (229)
T d1ojta1         226 A  226 (229)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.62  E-value=5.9e-09  Score=80.49  Aligned_cols=49  Identities=18%  Similarity=0.182  Sum_probs=40.5

Q ss_pred             ceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         121 EILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       121 ~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      .+++|.+..+... ..|+++|||+|..|+|+|..+++.+.+||++.|++.
T Consensus        11 ~v~ts~~~l~l~~-~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          11 KIVSSTGALALSE-IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             SEECHHHHTTCSS-CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             eEEeHHHhhCccc-cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            4566665555443 368999999999999999999999999999999874

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.61  E-value=4.6e-11  Score=103.81  Aligned_cols=77  Identities=12%  Similarity=-0.059  Sum_probs=55.3

Q ss_pred             cEEEcCEEEEcccCCCCCCCCCCCC--CcccceeecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343          92 KKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus        92 ~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+.||+||+|||+  .+..|.+++  .......+...........+|+|+|||+|.+|+|+|.+|++.+++|+++.|++
T Consensus       136 ~~~~~d~vviAtG~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~  213 (233)
T d1djqa3         136 LQYGADKVIIATGA--SECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRE  213 (233)
T ss_dssp             HTSCCSEEEECCCE--ECCHHHHHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCC
T ss_pred             hhhccceeeeccCC--CcccccccccccccccchhhhhhhhhccccCCceeEecCchHHHHHHHHHHhcCCceEEEEecc
Confidence            34689999999999  555554443  22222223222222234568999999999999999999999999999999986


Q ss_pred             c
Q psy2343         170 Y  170 (396)
Q Consensus       170 ~  170 (396)
                      .
T Consensus       214 ~  214 (233)
T d1djqa3         214 T  214 (233)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.59  E-value=4.9e-08  Score=84.42  Aligned_cols=78  Identities=21%  Similarity=0.158  Sum_probs=59.7

Q ss_pred             EecCcEEEEccCCCCCCCC----------CCcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHH
Q psy2343         267 HIEVDTIIYATGYNRHFPF----------IDKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFI  335 (396)
Q Consensus       267 ~~~~D~VI~aTG~~~~~~~----------l~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~  335 (396)
                      .+++|.|+++||.++...-          |+...++.++ +.+.+..+ +.|+.|+||++||+.....+.+.|..|++.+
T Consensus       149 ~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~-~~Ts~~~iyA~GDv~~~~~~~~~A~~eg~~a  227 (240)
T d1feca1         149 TLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAY-SKTNVDNIYAIGDVTDRVMLTPVAINEGAAF  227 (240)
T ss_dssp             EEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTT-CBCSSTTEEECGGGGCSCCCHHHHHHHHHHH
T ss_pred             EEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcc-cCcCCCCEEEEEECCCCccchhhHHHHHHHH
Confidence            4789999999999886432          2233344443 55677665 4799999999999987667788999999999


Q ss_pred             HHHHhccccC
Q psy2343         336 RSYIQAFIRK  345 (396)
Q Consensus       336 a~~l~~~~~l  345 (396)
                      |+.+.+..+.
T Consensus       228 a~~~~~~~~~  237 (240)
T d1feca1         228 VDTVFANKPR  237 (240)
T ss_dssp             HHHHHSSCCC
T ss_pred             HHHHhCCCCC
Confidence            9999886544

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=5.4e-08  Score=83.48  Aligned_cols=72  Identities=14%  Similarity=-0.020  Sum_probs=52.7

Q ss_pred             CcEEEEccCCCCCCCCC--CcccccccC-CccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcc
Q psy2343         270 VDTIIYATGYNRHFPFI--DKEKLEWKL-GIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAF  342 (396)
Q Consensus       270 ~D~VI~aTG~~~~~~~l--~~~~~~~~~-~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~  342 (396)
                      .+..+.++|.+|+.+.|  +...++.+. +.+.+.. .+.|+.|+||++||+.....+.+.|..+++.+|+.+.+.
T Consensus       154 ~~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~-~~~T~~~~v~A~GD~~~g~~l~~~a~~~G~~aa~~i~~~  228 (233)
T d1v59a1         154 GSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDD-QFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTG  228 (233)
T ss_dssp             CEEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCT-TSBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred             ccccceecccccCCCCcCchhcCeEEcCCCcEEECC-eEecCCCCEEEEcCCcccHHHHHHHHHHHHHHHHHHccC
Confidence            34445588888887754  333455543 4455554 457999999999999876677788999999999999765

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.51  E-value=1.2e-07  Score=75.83  Aligned_cols=42  Identities=31%  Similarity=0.507  Sum_probs=35.2

Q ss_pred             CCCCCCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccCc
Q psy2343         129 KSPDQIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRGY  170 (396)
Q Consensus       129 ~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~~  170 (396)
                      +.+....+++|+|||||+||+|+|..+.+. +++|++++|++.
T Consensus        38 ~~~~p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          38 HSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             CCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             cCccccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            344455678999999999999999998887 678999999874

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.46  E-value=2.7e-08  Score=76.55  Aligned_cols=34  Identities=24%  Similarity=0.086  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      ..++++|||+|.+|+|+|..+++.+.+|+++.|+
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            3579999999999999999999999999999875

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=3.7e-07  Score=75.09  Aligned_cols=76  Identities=14%  Similarity=0.061  Sum_probs=45.9

Q ss_pred             EEecCCcEecCcEEEEccCCCCCCCCCCcccccc-cCCccccccccccCCCCcEEEEecccCcC-chhhHHHHHHHHHH
Q psy2343         260 VHFVDDTHIEVDTIIYATGYNRHFPFIDKEKLEW-KLGIPDLFIHIAPRNLDNIFFFGFVNAAA-GLGDGLRLQGQFIR  336 (396)
Q Consensus       260 v~~~dG~~~~~D~VI~aTG~~~~~~~l~~~~~~~-~~~~~~l~~~~~~~~~p~l~~iG~~~~~~-~~~~~ae~qa~~~a  336 (396)
                      ....++..+.++.++.++|.......+....+.. ..+.+ ..+....++.|++|++||+.... .....+-.++..+|
T Consensus        94 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i-~v~~~~~t~~~gv~a~gd~~~~~~~~~vva~g~G~~aA  171 (184)
T d1fl2a1          94 IETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEI-IIDAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKAS  171 (184)
T ss_dssp             EEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCB-CCCTTCBCSSTTEEECSTTBSCSSCCHHHHHHHHHHHH
T ss_pred             eeeecceeeeccccccccccccccccccccccccccccee-ccCCceeeeCCCEEEEeeecCcccCCcEEEEECcHHHH
Confidence            4456677789999999999875544333232322 22333 34455678899999999987532 22334444444333

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.45  E-value=1.5e-07  Score=78.25  Aligned_cols=36  Identities=14%  Similarity=0.209  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCC-cEEEEeccCc
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSE-KVYHSTRRGY  170 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~-~V~l~~r~~~  170 (396)
                      .+|||+|||||.+|+++|..|++.+. +|+++.|++.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            47999999999999999999999875 6999999863

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.39  E-value=3.7e-07  Score=77.40  Aligned_cols=42  Identities=26%  Similarity=0.304  Sum_probs=35.0

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHh---------------------cCCCcEEEEeccCceeec
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDAS---------------------HHSEKVYHSTRRGYHYYP  174 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~---------------------~~~~~V~l~~r~~~~~~p  174 (396)
                      .+.+|+|+|||+|++|+|+|+.++                     ..+++|+++.|++...++
T Consensus        36 ~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~~~   98 (216)
T d1lqta1          36 DLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAA   98 (216)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCC
T ss_pred             cccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHhCC
Confidence            467999999999999999999886                     237889999999855443

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.10  E-value=4.1e-06  Score=71.49  Aligned_cols=76  Identities=18%  Similarity=0.137  Sum_probs=57.7

Q ss_pred             EecCcEEEEccCCCCCCCCC----------CcccccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHH
Q psy2343         267 HIEVDTIIYATGYNRHFPFI----------DKEKLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIR  336 (396)
Q Consensus       267 ~~~~D~VI~aTG~~~~~~~l----------~~~~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a  336 (396)
                      .+++|.|+++||.++..+..          .+..+..+++++.+.+ .+.|+.|++|++||+.....+.+.|..|++.+|
T Consensus       149 ~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~~G~I~vde-~~~T~~~~iyAvGDv~~~~~l~~~A~~eg~~aa  227 (238)
T d1aoga1         149 RLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIKNGGVQVDE-YSRTNVSNIYAIGDVTNRVMLTPVAINEAAALV  227 (238)
T ss_dssp             EEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEETTEECCCT-TCBCSSTTEEECGGGGTSCCCHHHHHHHHHHHH
T ss_pred             cccccceeeecccccccccccccceeeecccccEEEEcCCeEEecC-CeeeccCCEEEEEEecCCccchhhHHHHHHHHH
Confidence            36788899988888764421          1233444566676655 558999999999999877778889999999999


Q ss_pred             HHHhccc
Q psy2343         337 SYIQAFI  343 (396)
Q Consensus       337 ~~l~~~~  343 (396)
                      +.+.|..
T Consensus       228 ~~i~g~~  234 (238)
T d1aoga1         228 DTVFGTT  234 (238)
T ss_dssp             HHHHSSS
T ss_pred             HHHcCCC
Confidence            9998863

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=4.4e-07  Score=74.19  Aligned_cols=76  Identities=17%  Similarity=0.167  Sum_probs=59.4

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCCCcccce
Q psy2343          43 PVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSGYFSGEI  122 (396)
Q Consensus        43 ~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g~~~g~~  122 (396)
                      |.+....++.+|+.+.+++++++  +++|++|+.             +. ...||+||+|||.  .|+.+.+||.     
T Consensus        89 p~~~~~~~~~~~~~~~~~~~gV~--i~l~~~Vt~-------------~~-~~~~d~vilAtG~--~~~~~~~pg~-----  145 (179)
T d1ps9a3          89 PGKEEFYETLRYYRRMIEVTGVT--LKLNHTVTA-------------DQ-LQAFDETILASGI--PNRALAQPLI-----  145 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHTCE--EEESCCCCS-------------SS-SCCSSEEEECCCE--ECCTTHHHHH-----
T ss_pred             cccchHHHHHHHHHHhhhcCCeE--EEeCCEEcc-------------cc-cccceeEEEeecC--CCcccccchh-----
Confidence            44556689999999999999987  999987632             22 2579999999998  6777665541     


Q ss_pred             eecccCCCCCCCCCCeEEEEcCCCcHHHHH
Q psy2343         123 LHSMDYKSPDQIRNKRVLVVGAGNSGCDIA  152 (396)
Q Consensus       123 ~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a  152 (396)
                                 ..+++|+|||+|++|+|+.
T Consensus       146 -----------~~g~~v~vigggd~a~~~~  164 (179)
T d1ps9a3         146 -----------DSGKTVHLIGGCDVAMELD  164 (179)
T ss_dssp             -----------TTTCCEEECGGGTCCSSCC
T ss_pred             -----------ccCCEEEEECCcHhhhhcc
Confidence                       1378999999999999973

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=3.1e-06  Score=69.00  Aligned_cols=38  Identities=26%  Similarity=0.418  Sum_probs=34.8

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .....|+|+|||+|.+|++.|..|++.+.+|+++.+.+
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            34568999999999999999999999999999999975

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=97.85  E-value=0.00012  Score=62.80  Aligned_cols=33  Identities=18%  Similarity=0.222  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..|+|||+|.+|+-+|..|++.+.+|.++.+.+
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK   37 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            369999999999999999999999999999875

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=97.84  E-value=7.2e-06  Score=70.55  Aligned_cols=32  Identities=28%  Similarity=0.431  Sum_probs=30.0

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+-+|..|++.+.+|.++.+.+
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   35 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999865

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.81  E-value=9.9e-06  Score=70.31  Aligned_cols=31  Identities=29%  Similarity=0.489  Sum_probs=29.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .|+|||+|..|..+|..+++.+.+|.++.+.
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            4899999999999999999999999999875

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=97.80  E-value=2.2e-05  Score=67.35  Aligned_cols=61  Identities=21%  Similarity=0.208  Sum_probs=53.1

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE-EEEEccCcEEEcCEEEEcccCCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELSNGKKKKYDFIAVCNGAQRVA  109 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~-~V~~~~g~~~~~d~vvvAtG~~~~p  109 (396)
                      ...++.+.|...+++.+++  |+++++|++|..+++.+ .|.+++++++++|+||+|||..+.|
T Consensus       108 ~~~~i~~~L~~~~~~~gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p  169 (251)
T d2i0za1         108 KAQSVVDALLTRLKDLGVK--IRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVP  169 (251)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSSG
T ss_pred             cHHHHHHHHHHHHHHcCCc--ccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCCcccc
Confidence            5678999999999999987  99999999999987765 4788889889999999999996644

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=4e-05  Score=59.46  Aligned_cols=55  Identities=16%  Similarity=0.198  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      +++.+++.+.++..|+.  +++|++|.+|+.+++...|++++|+++.+|.||+|+|.
T Consensus        83 ~~~~~~~~~~l~~~GV~--~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          83 EYLSNWTMEKVRREGVK--VMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             HHHHHHHHHHHHTTTCE--EECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             HHHHHHHHHHHHhCCcE--EEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence            57889999999999998  99999999999988889999999999999999999993

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=4.1e-05  Score=57.49  Aligned_cols=55  Identities=15%  Similarity=0.123  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEccCcEEEcCEEEEccc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNG  104 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~~~~~d~vvvAtG  104 (396)
                      .+++.+++.+..++.|++  ++++++|+.+.+. ++...|++++|+++.+|.||+|||
T Consensus        61 d~~~~~~~~~~l~~~GV~--~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          61 DPMISETLVEVMNAEGPQ--LHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             CHHHHHHHHHHHHHHSCE--EECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             chhhHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            368999999999999998  9999999999987 556889999999999999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.65  E-value=5.7e-05  Score=56.76  Aligned_cols=55  Identities=13%  Similarity=0.200  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEccCcEEEcCEEEEccc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCNG  104 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~~~~~d~vvvAtG  104 (396)
                      .+++.+++++..++.|++  ++++++|++|++. ++...|++++|+++.||.||+|||
T Consensus        61 d~~~~~~~~~~l~~~GI~--v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          61 DSELRKQLTEQLRANGIN--VRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             CHHHHHHHHHHHHHTTEE--EEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             cchhhHHHHHHHhhCcEE--EEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            357999999999999988  9999999999986 556678889999999999999999

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.64  E-value=1.9e-05  Score=66.98  Aligned_cols=40  Identities=23%  Similarity=0.317  Sum_probs=35.2

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhc---------------------CCCcEEEEeccCcee
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASH---------------------HSEKVYHSTRRGYHY  172 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~---------------------~~~~V~l~~r~~~~~  172 (396)
                      .+.||+|+|||+|++|+|+|+.+++                     .+++|+++.|++...
T Consensus        36 ~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~   96 (225)
T d1cjca1          36 DLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQ   96 (225)
T ss_dssp             CTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGG
T ss_pred             cccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHh
Confidence            4679999999999999999999987                     468999999998443

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.60  E-value=4.8e-05  Score=68.43  Aligned_cols=33  Identities=30%  Similarity=0.463  Sum_probs=29.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCC--CcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHS--EKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~--~~V~l~~r~~  169 (396)
                      |+|+|||||.||+-+|..|++..  .+|+++.|+.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            79999999999999999998754  5899999985

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.56  E-value=0.00011  Score=55.36  Aligned_cols=55  Identities=15%  Similarity=0.180  Sum_probs=48.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC---cEEEcCEEEEccc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNG  104 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g---~~~~~d~vvvAtG  104 (396)
                      .+++.++++++.++.|++  ++++++|++|+..+++.+|+..++   +++.||.|++|+|
T Consensus        62 d~ei~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          62 DEQVAKEAQKILTKQGLK--ILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             CHHHHHHHHHHHHHTTEE--EEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             cchhHHHHHHHHHhcCce--eecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            468999999999999988  999999999999877777877653   4688999999998

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.47  E-value=7.9e-05  Score=55.58  Aligned_cols=36  Identities=19%  Similarity=0.262  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      +++||+|+|||+|.+|..-|..|.+.+.+|+++...
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            568999999999999999999999999999998754

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=97.44  E-value=8.3e-05  Score=63.92  Aligned_cols=61  Identities=15%  Similarity=0.295  Sum_probs=49.0

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe----EEEEEccCcEEEcCEEEEcccCCCCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI----WEVELSNGKKKKYDFIAVCNGAQRVAR  110 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~----~~V~~~~g~~~~~d~vvvAtG~~~~p~  110 (396)
                      +..++.+.|...+++.+++  |+++++|++|.+.++.    +.+. .++.++++|+||+|||..+.|+
T Consensus       107 ~a~~i~~~L~~~~~~~gV~--i~~~~~V~~i~~~~~~~~v~~~~~-~~~~~~~a~~VIiAtGG~S~p~  171 (253)
T d2gqfa1         107 GAEQIVEMLKSECDKYGAK--ILLRSEVSQVERIQNDEKVRFVLQ-VNSTQWQCKNLIVATGGLSMPG  171 (253)
T ss_dssp             CTHHHHHHHHHHHHHHTCE--EECSCCEEEEEECCSCSSCCEEEE-ETTEEEEESEEEECCCCSSCGG
T ss_pred             chhHHHHHHHHHHHHcCCC--eecCceEEEEEeecCCceeEEEEe-cCCEEEEeCEEEEcCCcccccc
Confidence            3578999999999999987  9999999999987443    3433 3566799999999999865443

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.29  E-value=0.0002  Score=61.37  Aligned_cols=34  Identities=26%  Similarity=0.232  Sum_probs=31.9

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+||+|||+|.+|+-+|..|++.+.+|+++.|++
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            5799999999999999999999999999999865

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=97.29  E-value=0.00011  Score=63.82  Aligned_cols=60  Identities=13%  Similarity=0.102  Sum_probs=53.0

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      +.....+...|...+++.|+.  |+++++|+.|+++++.|.|++++|+ +.||.||+|+|.++
T Consensus       147 ~i~~~~~~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~~~~~V~t~~g~-i~a~~vV~AaG~~s  206 (276)
T d1ryia1         147 HVEPYFVCKAYVKAAKMLGAE--IFEHTPVLHVERDGEALFIKTPSGD-VWANHVVVASGVWS  206 (276)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCE--EETTCCCCEEECSSSSEEEEETTEE-EEEEEEEECCGGGT
T ss_pred             eeecccchhHHHHHHHHcCCE--EecceEEEeEEeecceEEEecCCeE-EEcCEEEECCCccH
Confidence            456778899999999999987  8999999999998889999998875 89999999999864

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.28  E-value=9.2e-05  Score=62.83  Aligned_cols=36  Identities=28%  Similarity=0.287  Sum_probs=33.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+|+|+|||+|.+|+..|..|++.+.+|+++.+++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            468999999999999999999999999999999875

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=1.8e-05  Score=66.53  Aligned_cols=71  Identities=15%  Similarity=0.219  Sum_probs=49.2

Q ss_pred             cCcEEEcCEEEEcccCCCCCCCCCCCC-Cc-----ccceeecccCCC---CCCCCCCeEEEEcCCCcHHHHHHHHhcCCC
Q psy2343          90 NGKKKKYDFIAVCNGAQRVARYPNYSG-YF-----SGEILHSMDYKS---PDQIRNKRVLVVGAGNSGCDIAVDASHHSE  160 (396)
Q Consensus        90 ~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~-----~g~~~hs~~~~~---~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~  160 (396)
                      ++..+.++.+++|||.  .|.+|.+|+ ..     .|-.+....+..   ......++|+|||+|.+|+|+|..+++.+.
T Consensus       124 ~~~~~~~~~~iiatG~--~p~ip~ip~~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~  201 (217)
T d1gesa1         124 NGETITADHILIATGG--RPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGR  201 (217)
T ss_dssp             TTEEEEEEEEEECCCE--EECCCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHHH
T ss_pred             CCceeeeeeeeeecCc--cccCCCCCCcCCcccccccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHHHHHHHHHH
Confidence            4667899999999999  888888876 21     121111221211   122345789999999999999998888776


Q ss_pred             cE
Q psy2343         161 KV  162 (396)
Q Consensus       161 ~V  162 (396)
                      +|
T Consensus       202 ~v  203 (217)
T d1gesa1         202 RL  203 (217)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=97.25  E-value=0.0002  Score=62.25  Aligned_cols=58  Identities=21%  Similarity=0.173  Sum_probs=52.3

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ....+...|.+.++..|++  ++++++|++|+..+++|.|++++|+ +.+|.||+|+|.++
T Consensus       148 ~p~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~~~v~V~t~~g~-i~a~~VViAaG~~s  205 (281)
T d2gf3a1         148 FSENCIRAYRELAEARGAK--VLTHTRVEDFDISPDSVKIETANGS-YTADKLIVSMGAWN  205 (281)
T ss_dssp             EHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECSSCEEEEETTEE-EEEEEEEECCGGGH
T ss_pred             ccccccccccccccccccc--ccCCcEEEEEEEECCEEEEEECCcE-EEcCEEEECCCCcc
Confidence            4578999999999999987  9999999999999889999998885 89999999999864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.22  E-value=0.00049  Score=51.38  Aligned_cols=54  Identities=13%  Similarity=0.187  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEccCcEEEcCEEEEcc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKKKYDFIAVCN  103 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~~~~~d~vvvAt  103 (396)
                      .+++.++++...++.|++  ++++++|++|+.. ++...|++++|+++.||.||+|.
T Consensus        63 d~~~~~~l~~~l~~~GV~--v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          63 DHTLREELTKQLTANGIQ--ILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             chHHHHHHHHHHHhcCcE--EEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            468999999999999998  9999999999976 66788999999999999999984

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=97.19  E-value=0.0013  Score=55.02  Aligned_cols=31  Identities=35%  Similarity=0.417  Sum_probs=28.7

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .|+|||+|..|++.|..+++.+.++.+++.+
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~   34 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQS   34 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEec
Confidence            5999999999999999999999999999864

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.15  E-value=0.00086  Score=51.25  Aligned_cols=55  Identities=16%  Similarity=0.140  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCC--e-EEEEEccCcEEEcCEEEEccc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYED--I-WEVELSNGKKKKYDFIAVCNG  104 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~--~-~~V~~~~g~~~~~d~vvvAtG  104 (396)
                      .+++.+++++..+..|++  ++++++|++|+...+  . -.|.+++|+++.+|.||+|+|
T Consensus        76 ~~~~~~~~~~~~~~~GV~--i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          76 APPVSAFYEHLHREAGVD--IRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             CHHHHHHHHHHHHHHTCE--EECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             chhhhhhhhhcccccccE--EEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            468899999999999998  999999999998632  2 236678999999999999998

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00034  Score=49.97  Aligned_cols=37  Identities=16%  Similarity=0.117  Sum_probs=34.5

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +++||+|+|+|.|.||.-+|..|++.+.+|+++..+.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence            5889999999999999999999999999999998765

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.81  E-value=0.00094  Score=50.41  Aligned_cols=55  Identities=18%  Similarity=0.204  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc--C--cEEEcCEEEEccc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN--G--KKKKYDFIAVCNG  104 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~--g--~~~~~d~vvvAtG  104 (396)
                      ..++.+++.+..++.++.  ++++++|++++..+++..|++++  +  +++++|.|++|+|
T Consensus        66 d~~~~~~l~~~l~~~gv~--~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          66 DRDLVKVWQKQNEYRFDN--IMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             CHHHHHHHHHHHGGGEEE--EECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             hhhHHHHHHHHHHHcCcc--cccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            468999999999999987  99999999999987776677653  2  3589999999999

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.80  E-value=0.0019  Score=47.98  Aligned_cols=54  Identities=17%  Similarity=0.387  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEccCcEE-EcCEEEEcc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSNGKKK-KYDFIAVCN  103 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~g~~~-~~d~vvvAt  103 (396)
                      .+++.+++.+..++.|+.  ++++++|++|++. ++...|++++|++. .||.||+|.
T Consensus        62 d~~~~~~~~~~l~~~gV~--i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          62 DESVINVLENDMKKNNIN--IVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             cHHHHHHHHHHHHhCCCE--EEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            468999999999999998  9999999999986 56688999999875 589999984

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.79  E-value=0.0045  Score=51.60  Aligned_cols=32  Identities=25%  Similarity=0.293  Sum_probs=28.6

Q ss_pred             eEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~  169 (396)
                      +|+|||+|.+|+.+|..|++.  ..+|+++.+.+
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            899999999999999999764  56899999875

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0024  Score=48.02  Aligned_cols=55  Identities=16%  Similarity=0.088  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc---cC------cEEEcCEEEEccc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---NG------KKKKYDFIAVCNG  104 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~---~g------~~~~~d~vvvAtG  104 (396)
                      .+++.+++.+..++.|++  ++++++|++|++.++++.++..   .|      ....+|.|++|+|
T Consensus        62 d~~~~~~~~~~l~~~Gv~--i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          62 DSMISTNCTEELENAGVE--VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             hhHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            367999999999999998  9999999999998888877653   22      1367999999998

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.71  E-value=0.0014  Score=49.04  Aligned_cols=51  Identities=22%  Similarity=0.292  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEccc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNG  104 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG  104 (396)
                      .+++.+++++..+..|++  ++++++|+++..  +  .|++++|+++.+|.||+|+|
T Consensus        71 ~~~~~~~~~~~l~~~GV~--i~~~~~v~~~~~--~--~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          71 PATLADFVARYHAAQGVD--LRFERSVTGSVD--G--VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             CHHHHHHHHHHHHTTTCE--EEESCCEEEEET--T--EEEETTSCEEECSEEEECSC
T ss_pred             CHHHHHHHHHHHHHCCcE--EEeCCEEEEEeC--C--EEEECCCCEEECCEEEEeeC
Confidence            468999999999999998  999999988763  3  57788999999999999998

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=96.71  E-value=0.0013  Score=57.61  Aligned_cols=58  Identities=19%  Similarity=0.153  Sum_probs=48.9

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe-EEEEEccCcEEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      ....+..-+.+.+++.|+.  |+++++|+++..++++ +.|.+++|+ ++||.||+|+|.++
T Consensus       146 ~p~~l~~~l~~~a~~~gv~--i~~~~~V~~i~~~~~~v~~V~T~~g~-i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         146 SAARAVQLLIKRTESAGVT--YRGSTTVTGIEQSGGRVTGVQTADGV-IPADIVVSCAGFWG  204 (305)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEETTEE-EECSEEEECCGGGH
T ss_pred             chhhhhhhHHhhhhccccc--ccCCceEEEEEEeCCEEEEEecccee-EECCEEEEecchhH
Confidence            4577888888888888987  9999999999998776 458887774 89999999999864

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.70  E-value=0.00047  Score=60.13  Aligned_cols=34  Identities=38%  Similarity=0.411  Sum_probs=32.1

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|||+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6999999999999999999999999999999865

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00063  Score=53.22  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=33.3

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      +++||+|+|||||..|.+-|..|.+.+.+|+++...
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            578999999999999999999999999999999754

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.58  E-value=0.00076  Score=59.73  Aligned_cols=35  Identities=31%  Similarity=0.497  Sum_probs=32.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +.|+|+|||||.||+=+|..|++.+.+|+++.+++
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence            47999999999999999999999999999999876

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.50  E-value=0.0027  Score=47.31  Aligned_cols=55  Identities=15%  Similarity=0.152  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeEEEEE----ccCcEEEcCEEEEccc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWEVEL----SNGKKKKYDFIAVCNG  104 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~~V~~----~~g~~~~~d~vvvAtG  104 (396)
                      .+++.+++++..++.+++  ++++++|++|++++ +.+....    .+++++.+|.||+|+|
T Consensus        62 d~~~~~~~~~~l~~~gI~--v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          62 DNETRAYVLDRMKEQGME--IISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             SHHHHHHHHHHHHHTTCE--EESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ccchhhhhhhhhhccccE--EEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            357899999999999998  99999999999874 3332221    2345689999999998

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.36  E-value=0.0011  Score=49.30  Aligned_cols=52  Identities=15%  Similarity=0.076  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEcc--CcEEEcCEEEEccc
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSN--GKKKKYDFIAVCNG  104 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~--g~~~~~d~vvvAtG  104 (396)
                      +++.+++++..++.|++  ++++++|++++  ++.-.+...+  ++++.||.|++|||
T Consensus        62 ~~~~~~l~~~l~~~gV~--i~~~~~V~~i~--~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          62 SELTAPVAESLKKLGIA--LHLGHSVEGYE--NGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHHHHHHHHHHHTCE--EETTCEEEEEE--TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             chhHHHHHHHHHhhcce--EEcCcEEEEEc--CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            57999999999999988  99999999986  3433333333  34689999999998

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.31  E-value=2.9e-05  Score=65.91  Aligned_cols=99  Identities=17%  Similarity=0.079  Sum_probs=53.9

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC-Ccc---c-
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG-YFS---G-  120 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g-~~~---g-  120 (396)
                      .....+.++........++.  +++|++|..        .+..++- ...||+|++|||.  .+..+.++| ...   . 
T Consensus        57 ~~~~~~~~~~~~~~~~~g~~--~~~~~~v~~--------~~~~~~~-~~~~~~v~~atGa--~~~~~~~~g~~~~~~~~~  123 (239)
T d1lqta2          57 PKIKSISKQFEKTAEDPRFR--FFGNVVVGE--------HVQPGEL-SERYDAVIYAVGA--QSRGVPTPGLPFDDQSGT  123 (239)
T ss_dssp             TGGGGGHHHHHHHHTSTTEE--EEESCCBTT--------TBCHHHH-HHHSSEEEECCCC--CEECCCCTTSCCBTTTTB
T ss_pred             ccchhhhhhhhhhhccCCce--EEEEEEecc--------ccchhhh-hccccceeeecCC--Cccccccccccccccccc
Confidence            33456667776777776655  677765411        0011111 1359999999998  343333333 111   0 


Q ss_pred             -ceeecccCCCC------CCCCCCeEEEEcCCCcHHHHHHHHhc
Q psy2343         121 -EILHSMDYKSP------DQIRNKRVLVVGAGNSGCDIAVDASH  157 (396)
Q Consensus       121 -~~~hs~~~~~~------~~~~~k~VvVVG~G~sa~d~a~~l~~  157 (396)
                       ..++.......      ....+++++|+|+|++|+|++..+..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~g~~~vv~g~g~~a~d~a~~~v~  167 (239)
T d1lqta2         124 IPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK  167 (239)
T ss_dssp             CCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccccccccceeecCCCEEEEeCCCchHHHHHHHHHh
Confidence             11111000001      11247889999999999999987654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.23  E-value=0.0085  Score=44.63  Aligned_cols=53  Identities=15%  Similarity=0.206  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCe--EEEEEccC-----cEEEcCEEEEc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDI--WEVELSNG-----KKKKYDFIAVC  102 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~--~~V~~~~g-----~~~~~d~vvvA  102 (396)
                      .+++.++++.+.++.|++  +++|++|+++++.+++  ..++..++     +++++|.|++|
T Consensus        63 d~ei~~~l~~~l~~~GV~--i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          63 DGEVAKATQKFLKKQGLD--FKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             hhhhHHHHHHHHHhccce--EEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            478999999999999998  9999999999987443  34444432     35899999997

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.00037  Score=58.14  Aligned_cols=52  Identities=15%  Similarity=0.277  Sum_probs=41.0

Q ss_pred             HHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC
Q psy2343          59 AKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG  116 (396)
Q Consensus        59 ~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g  116 (396)
                      .++.++.  ++++++|++|+.+++  +|++++|+++.||.||+|||.  .|..+.+++
T Consensus        93 ~~~~gI~--~~~g~~V~~id~~~~--~V~l~dG~~i~~d~lViAtG~--~~~~~~l~~  144 (213)
T d1m6ia1          93 IENGGVA--VLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGG--TEPNVELAK  144 (213)
T ss_dssp             STTCEEE--EEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCE--EEECCTTHH
T ss_pred             HHHCCeE--EEeCCEEEEeeccCc--eeeeccceeeccceEEEeeee--ecchhhhhh
Confidence            3456665  889999999987655  688899999999999999998  555555544

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.19  E-value=0.0053  Score=49.12  Aligned_cols=34  Identities=24%  Similarity=0.262  Sum_probs=31.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|++.|||+|..|.-+|..|++.+.+|+++.|.+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4899999999999999999999999999999865

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.17  E-value=0.01  Score=43.78  Aligned_cols=53  Identities=26%  Similarity=0.250  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc-cC--cEEEcCEEEEc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS-NG--KKKKYDFIAVC  102 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~-~g--~~~~~d~vvvA  102 (396)
                      ..++.+++.+..++.|++  ++++++|++|+..+++..|+.. +|  +++.+|.|+|.
T Consensus        62 d~~~~~~l~~~l~~~GI~--i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          62 EKQMAAIIKKRLKKKGVE--VVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             CHHHHHHHHHHHHHTTCE--EEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             cchhHHHHHHHHHhcCCE--EEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            357999999999999998  9999999999998778877765 33  45889999973

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.07  E-value=0.0091  Score=44.49  Aligned_cols=55  Identities=11%  Similarity=0.138  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe----CCeEEEEEcc---Cc--EEEcCEEEEccc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY----EDIWEVELSN---GK--KKKYDFIAVCNG  104 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~----~~~~~V~~~~---g~--~~~~d~vvvAtG  104 (396)
                      .+++.+++....++.|++  ++++++|++++..    ++...++...   ++  ...||.|++|+|
T Consensus        59 D~~~~~~l~~~l~~~Gv~--i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          59 DQDMANKIGEHMEEHGIK--FIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             CHHHHHHHHHHHHHTTEE--EEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             CHHHHHHHHHHHHHCCCE--EEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            468999999999999998  9999999999874    3445665543   22  357999999998

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.04  E-value=0.0019  Score=54.68  Aligned_cols=34  Identities=29%  Similarity=0.295  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -|+|+|||+|.+|+=+|..|++.+.+|+++.|..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999999863

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.00  E-value=0.0031  Score=54.43  Aligned_cols=54  Identities=9%  Similarity=0.137  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC---cEEEcCEEEEcccCC
Q psy2343          51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG---KKKKYDFIAVCNGAQ  106 (396)
Q Consensus        51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g---~~~~~d~vvvAtG~~  106 (396)
                      +...++..+++.+.+  |++|++|++|+.++++++|++.++   +++.||+||+|+|..
T Consensus       221 ~~~~~~~l~~~~g~~--i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~  277 (347)
T d2ivda1         221 LQVLIDALAASLGDA--AHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAH  277 (347)
T ss_dssp             THHHHHHHHHHHGGG--EESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHH
T ss_pred             hHHHHHHHHHHhhcc--cccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHH
Confidence            345556667777765  999999999999888888877543   358899999999873

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.98  E-value=0.0015  Score=57.51  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..|+|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            56899999999999999999999999999999864

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.90  E-value=0.0042  Score=49.43  Aligned_cols=35  Identities=23%  Similarity=0.135  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+|+|+|||+|..|.-+|..|++.+.+|+++.|..
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            37999999999999999999999999999999975

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.86  E-value=0.01  Score=44.23  Aligned_cols=54  Identities=13%  Similarity=0.155  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc---cC--cEEEcCEEEEcc
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS---NG--KKKKYDFIAVCN  103 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~---~g--~~~~~d~vvvAt  103 (396)
                      ..++.+++.+..++.|++  +++|++|.+|+..+++.+|+..   +|  +++.+|.|++|.
T Consensus        65 d~~~~~~l~~~l~~~GI~--i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          65 DAEIRKQFQRSLEKQGMK--FKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             CHHHHHHHHHHHHHSSCC--EECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             hhcchhhhhhhhhcccce--EEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            368999999999999998  9999999999987666666553   23  348899999983

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.61  E-value=0.00039  Score=55.24  Aligned_cols=103  Identities=15%  Similarity=0.195  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC-CCCC-Ccccceeec
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP-NYSG-YFSGEILHS  125 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P-~~~g-~~~g~~~hs  125 (396)
                      .+.+..+...+....++.  ++++++|+.++....   +...++.++.||.||+|+|.  .|..+ .-.| ...+.+.-.
T Consensus        51 ~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~---~~~~~~~~i~~D~li~a~G~--~~~~~~~~~gl~~~~~i~v~  123 (167)
T d1xhca1          51 RNRLFPYSLDWYRKRGIE--IRLAEEAKLIDRGRK---VVITEKGEVPYDTLVLATGA--PNVDLARRSGIHTGRGILID  123 (167)
T ss_dssp             GGGGCSSCHHHHHHHTEE--EECSCCEEEEETTTT---EEEESSCEEECSEEEECCCE--ECCHHHHHTTCCBSSSEECC
T ss_pred             hhhhhHHHHHHHHhccce--eeeeccccccccccc---cccccccccccceeEEEEEe--cCCchhhhcCceeCCceeec
Confidence            344555556666677766  788999998875432   34446667999999999998  44321 1122 111212211


Q ss_pred             ccCCCC--CCC-----CCCeEEEEcCCCcHHHHHHHHhc
Q psy2343         126 MDYKSP--DQI-----RNKRVLVVGAGNSGCDIAVDASH  157 (396)
Q Consensus       126 ~~~~~~--~~~-----~~k~VvVVG~G~sa~d~a~~l~~  157 (396)
                      ..++..  .-|     ...+.+|+|++..|++.|..+++
T Consensus       124 ~~~~t~~~~i~aiGD~~~~~~~~~~~~~~a~~~a~~~a~  162 (167)
T d1xhca1         124 DNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLAD  162 (167)
T ss_dssp             TTSBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHH
T ss_pred             cccEecCCCeEEeeecccCCCeEEChHHHHHHHHHHHHH
Confidence            111111  111     12234567888889998887765

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0038  Score=54.91  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +.+||+|||+|.+|+=+|..|++.+.+|+++.+++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            34689999999999999999999999999998764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.47  E-value=0.01  Score=44.23  Aligned_cols=52  Identities=13%  Similarity=0.107  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcc
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCN  103 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAt  103 (396)
                      +++.++++++.+..|++  ++++++|++|+.++....| ..+|+++.+|.||+|.
T Consensus        72 ~~~~~~~~~~l~~~gv~--~~~~~~v~~i~~~~~~~~v-~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          72 KEFTDVLTEEMEANNIT--IATGETVERYEGDGRVQKV-VTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHHHHHHHHHHTTTEE--EEESCCEEEEECSSBCCEE-EESSCEEECSEEEECS
T ss_pred             hhhHHHHHHHhhcCCeE--EEeCceEEEEEcCCCEEEE-EeCCCEEECCEEEEEC
Confidence            67999999999999988  9999999999875433444 5577789999999984

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.45  E-value=0.0035  Score=52.93  Aligned_cols=32  Identities=34%  Similarity=0.387  Sum_probs=29.4

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      +|+|||||.+|+-+|..|++.+ ++|+++.+++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            6999999999999999999998 5799999875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.43  E-value=0.0033  Score=54.35  Aligned_cols=105  Identities=10%  Similarity=0.070  Sum_probs=57.7

Q ss_pred             hhcccCCCeEecCCcceEeC----------CeEEec-----CCcEecCcEEEEccCCCC-------------CCCCCCcc
Q psy2343         238 LYHIGHGDILPKDDIKNLNG----------NIVHFV-----DDTHIEVDTIIYATGYNR-------------HFPFIDKE  289 (396)
Q Consensus       238 ~~~i~~g~i~~~~~i~~i~~----------~~v~~~-----dG~~~~~D~VI~aTG~~~-------------~~~~l~~~  289 (396)
                      .+.+..++|.....|++++.          ..|...     +++.+++|.||+|++...             ..+++...
T Consensus       238 ~~~l~~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~  317 (373)
T d1seza1         238 CKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEV  317 (373)
T ss_dssp             HTTSCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCC
T ss_pred             HHHhccceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccc
Confidence            34445557776666766641          123332     234588999999997421             11111110


Q ss_pred             cccccCCccccccccccCCCCcEEEEecccCcCchhhHHHHHHHHHHHHHhcccc
Q psy2343         290 KLEWKLGIPDLFIHIAPRNLDNIFFFGFVNAAAGLGDGLRLQGQFIRSYIQAFIR  344 (396)
Q Consensus       290 ~~~~~~~~~~l~~~~~~~~~p~l~~iG~~~~~~~~~~~ae~qa~~~a~~l~~~~~  344 (396)
                      . ..+.+........+.++.|+||++||+..+ ..+..|..+|+.+|..+...++
T Consensus       318 ~-~~~~~~~~~~~~~~~t~~pglf~aGd~~~g-~~~~~A~~~G~~aA~~i~~~L~  370 (373)
T d1seza1         318 Y-GHNYDSVLDAIDKMEKNLPGLFYAGNHRGG-LSVGKALSSGCNAADLVISYLE  370 (373)
T ss_dssp             C-CTTHHHHHHHHHHHHHHSTTEEECCSSSSC-SSHHHHHHHHHHHHHHHHHHHS
T ss_pred             c-ccCCCcEeecccccCCCCCCEEEEecCCCc-hhHHHHHHHHHHHHHHHHHHHh
Confidence            0 000011111112235678999999998653 4456677788888887766543

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.0045  Score=54.04  Aligned_cols=32  Identities=25%  Similarity=0.341  Sum_probs=30.2

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||||.||+=+|..|++.+.+|+++.+++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            69999999999999999999999999999875

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.38  E-value=0.004  Score=51.98  Aligned_cols=32  Identities=28%  Similarity=0.451  Sum_probs=30.4

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+=+|..|++.+.+|+++.+++
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            49999999999999999999999999999975

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0094  Score=52.53  Aligned_cols=52  Identities=12%  Similarity=0.004  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343          52 LDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        52 ~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      ....+.+++..+..  |++|++|++|..+++++.|++.+|+++.+|+||+|++.
T Consensus       210 ~~~~~~l~~~~g~~--i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~  261 (383)
T d2v5za1         210 GQVSERIMDLLGDR--VKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPP  261 (383)
T ss_dssp             HHHHHHHHHHHGGG--EEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCG
T ss_pred             hHHHHHHHHHcCCe--EEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCH
Confidence            34455566777765  99999999999988899999999999999999999864

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.31  E-value=0.0044  Score=53.39  Aligned_cols=32  Identities=25%  Similarity=0.271  Sum_probs=30.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            69999999999999999999999999999864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.98  E-value=0.01  Score=44.09  Aligned_cols=51  Identities=14%  Similarity=0.141  Sum_probs=41.4

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      .+++.+++.+..++.|++  +++|++|++++.+  .  + +.+++.+.+|.||+|+|.
T Consensus        71 d~~~~~~~~~~l~~~GV~--~~~~~~v~~~~~~--~--v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          71 DEELSNMIKDMLEETGVK--FFLNSELLEANEE--G--V-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             CHHHHHHHHHHHHHTTEE--EECSCCEEEECSS--E--E-EETTEEEECSCEEEECCE
T ss_pred             CHHHHHHHHHHHHHCCcE--EEeCCEEEEEeCC--E--E-EeCCCEEECCEEEEEEEe
Confidence            468999999999999987  8999999888642  1  2 346667999999999995

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.66  E-value=0.0094  Score=50.85  Aligned_cols=32  Identities=19%  Similarity=0.224  Sum_probs=30.0

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+=+|.+|++.+.+|+++.+..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999864

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.56  E-value=0.029  Score=48.77  Aligned_cols=50  Identities=18%  Similarity=0.293  Sum_probs=39.4

Q ss_pred             HHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEc----cCcEEEcCEEEEcccC
Q psy2343          54 YLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELS----NGKKKKYDFIAVCNGA  105 (396)
Q Consensus        54 Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~----~g~~~~~d~vvvAtG~  105 (396)
                      ..+..+++.+..  |+++++|++|+.++++++|+..    ++++++||+||+|++.
T Consensus       240 l~~~l~~~~g~~--i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~  293 (370)
T d2iida1         240 LPTAMYRDIQDK--VHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTS  293 (370)
T ss_dssp             HHHHHHHHTGGG--EESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCH
T ss_pred             HHHHHHHhcCCc--cccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCH
Confidence            344556777765  9999999999998888887763    2457899999999974

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.06  E-value=0.0084  Score=49.89  Aligned_cols=34  Identities=18%  Similarity=0.036  Sum_probs=29.7

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCC-------CcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHS-------EKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~-------~~V~l~~r~~  169 (396)
                      ..+|+|||+|.+|+-+|..|++.+       -+|+++.+.+
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            358999999999999999998864       3799999875

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.02  E-value=0.014  Score=50.60  Aligned_cols=32  Identities=19%  Similarity=0.388  Sum_probs=29.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      +|+|||+|.+|+=+|..|++.+ ++|+++.|.+
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            6999999999999999999987 5799999864

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.93  E-value=0.016  Score=49.45  Aligned_cols=32  Identities=25%  Similarity=0.309  Sum_probs=29.9

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+-+|.+|++.+.+|+++.+..
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999863

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.024  Score=44.10  Aligned_cols=37  Identities=22%  Similarity=0.207  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+.||+|+|+|-|..|--+|..+...+.+|++....|
T Consensus        21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            5789999999999999999999999999999998764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.70  E-value=0.02  Score=48.59  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=30.2

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~~  170 (396)
                      +|+|||||.+|+=+|..|++.+ .+|+++.|++.
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            7999999999999999999998 58999999864

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.70  E-value=0.014  Score=50.19  Aligned_cols=32  Identities=22%  Similarity=0.207  Sum_probs=30.5

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|||+|.+|+=+|..|++.+.+|+++.|++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            69999999999999999999999999999976

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.017  Score=50.71  Aligned_cols=100  Identities=16%  Similarity=0.226  Sum_probs=56.8

Q ss_pred             CCeEecCCcceEeCC----eEEecCCcEecCcEEEEccCCCCCC-----CCCCccc---cc--ccCCccccccccccCCC
Q psy2343         244 GDILPKDDIKNLNGN----IVHFVDDTHIEVDTIIYATGYNRHF-----PFIDKEK---LE--WKLGIPDLFIHIAPRNL  309 (396)
Q Consensus       244 g~i~~~~~i~~i~~~----~v~~~dG~~~~~D~VI~aTG~~~~~-----~~l~~~~---~~--~~~~~~~l~~~~~~~~~  309 (396)
                      +.|.....|.+|...    .|++.||+++.+|.||+|++...-.     |-|+...   +.  ...+....+.....+..
T Consensus       222 ~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (383)
T d2v5za1         222 DRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGILTQYGRVLRQPV  301 (383)
T ss_dssp             GGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHHHHHGGGTTCCB
T ss_pred             CeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCCccchhhhhhcCCc
Confidence            467777788888643    3778899999999999998753211     1111100   00  01111222333334455


Q ss_pred             CcEEEEecccCc--CchhhHHHHHHHHHHHHHhccc
Q psy2343         310 DNIFFFGFVNAA--AGLGDGLRLQGQFIRSYIQAFI  343 (396)
Q Consensus       310 p~l~~iG~~~~~--~~~~~~ae~qa~~~a~~l~~~~  343 (396)
                      .+|+++|.....  .+.+..+..+++.+|..+...+
T Consensus       302 ~~~~~~G~~~~~~~~g~~~ga~~~g~~~a~~i~~~~  337 (383)
T d2v5za1         302 DRIYFAGTETATHWSGYMEGAVEAGERAAREILHAM  337 (383)
T ss_dssp             TTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred             CceEeccccccccCCcchHHHHHHHHHHHHHHHHHh
Confidence            689999964322  2344556667777776654443

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.64  E-value=0.026  Score=44.51  Aligned_cols=37  Identities=19%  Similarity=0.204  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..+||+|+|+|+|-+|--++..|.+.+.+|+++.|+.
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            5679999999999999999999999877899998874

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.55  E-value=0.048  Score=44.92  Aligned_cols=54  Identities=6%  Similarity=-0.028  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe--CCeEEEEEccCcEEEcCEEEEcccC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY--EDIWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~--~~~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      .++.+-|.+.+++.|..  |++|++|++|..+  +++..+.+.+|+++.||.||. +.+
T Consensus       236 ~~l~~~l~~~~~~~G~~--i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~-~~s  291 (297)
T d2bcgg1         236 GELPQGFARLSAIYGGT--YMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIA-DPT  291 (297)
T ss_dssp             THHHHHHHHHHHHTTCE--EECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEE-CGG
T ss_pred             HHHHHHHHHHHHhcCCE--EEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEE-Chh
Confidence            46778888888889887  9999999999876  345555567888899999764 454

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=93.25  E-value=0.03  Score=47.88  Aligned_cols=35  Identities=29%  Similarity=0.357  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~  169 (396)
                      ....|+|||+|.+|+-+|..|++. +.+|+++.+++
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            456799999999999999999874 89999999876

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=93.12  E-value=0.1  Score=43.46  Aligned_cols=41  Identities=15%  Similarity=0.280  Sum_probs=37.9

Q ss_pred             ceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCC
Q psy2343          67 HSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQR  107 (396)
Q Consensus        67 ~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~  107 (396)
                      .++++++|+.++.+++.|+|++++|+++++|.||.|.|.++
T Consensus       112 ~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s  152 (265)
T d2voua1         112 RYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  152 (265)
T ss_dssp             TEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             eeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccc
Confidence            38999999999998889999999999999999999999865

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=93.00  E-value=0.026  Score=43.74  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+.||+|+|+|-|..|--+|..+...+.+|++....|
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            4689999999999999999999999999999998765

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=92.98  E-value=0.031  Score=43.53  Aligned_cols=33  Identities=18%  Similarity=0.161  Sum_probs=30.9

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~  170 (396)
                      ||+|||+|..|.=+|..|++.+.+|+++.|.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            799999999999999999999999999999763

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.90  E-value=0.0031  Score=50.99  Aligned_cols=103  Identities=16%  Similarity=0.134  Sum_probs=50.2

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC--Ccccceee
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG--YFSGEILH  124 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g--~~~g~~~h  124 (396)
                      ....+..+...........  ++++++|..       +.....+.....++++++|+|....+..+....  ...+...+
T Consensus        53 ~~~~~~~~~~~~~~~~~~~--~~~~~~v~~-------~~~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~  123 (196)
T d1gtea4          53 LPYDVVNFEIELMKDLGVK--IICGKSLSE-------NEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRW  123 (196)
T ss_dssp             SCHHHHHHHHHHHHTTTCE--EEESCCBST-------TSBCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTT
T ss_pred             cccccccchhhhhhcccee--EEeeEEecc-------ceeeeehhhccccceeeEEeccccCCccccccccccccccccc
Confidence            3455555666666555543  555554311       111111222346899999999854444442211  11111111


Q ss_pred             cccCCCCCCCCCC------eEEEEcCCCcHHHHHHHHhcC
Q psy2343         125 SMDYKSPDQIRNK------RVLVVGAGNSGCDIAVDASHH  158 (396)
Q Consensus       125 s~~~~~~~~~~~k------~VvVVG~G~sa~d~a~~l~~~  158 (396)
                      .........+..+      ...|+|+|++|+|.+...++.
T Consensus       124 ~~~~~~~~~~~~~~~~v~~~g~vigg~~~av~a~~~g~~~  163 (196)
T d1gtea4         124 DLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQA  163 (196)
T ss_dssp             SSBCCCTTTCBCSSTTEEECSGGGCSCCCHHHHHHHHHHH
T ss_pred             cceeccccccCCCcccccccccccCCcchHHHHHHHHhhh
Confidence            1111122222222      233679999999988776554

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.88  E-value=0.012  Score=47.70  Aligned_cols=58  Identities=21%  Similarity=0.196  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEE-ccCc--EEEcCEEEEcccCCCCCC
Q psy2343          49 SMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVEL-SNGK--KKKYDFIAVCNGAQRVAR  110 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~-~~g~--~~~~d~vvvAtG~~~~p~  110 (396)
                      +++..+.....+..++.  ++++++|++|+.+++..++.. .+|+  ++.||.||+|+|.  .|+
T Consensus        56 ~~~~~~~~~~l~~~gi~--v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~--~~~  116 (198)
T d1nhpa1          56 NSVRYMTGEKMESRGVN--VFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA--VPF  116 (198)
T ss_dssp             GGSBSCCHHHHHHTTCE--EEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE--EEC
T ss_pred             HHHHHhhHHHHHHCCcE--EEEeeceeeEeeccccceeeecccccccccccceeeEeecc--eee
Confidence            33444445556667887  899999999998777555543 3343  4789999999998  554

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=92.81  E-value=0.036  Score=43.73  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=33.3

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..++|+|+|+|+|-+|-=++..|.+.+++|+++.|..
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            5689999999999999999998888888999999974

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.78  E-value=0.04  Score=43.65  Aligned_cols=36  Identities=17%  Similarity=0.454  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++||+|+|+|+|-+|--++..|.+.+ +|+++.|+.
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            478999999999999988888887655 899998864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.03  Score=45.12  Aligned_cols=33  Identities=30%  Similarity=0.346  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      |+|+|||+|..|..+|..++..+.+|+++.+.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            799999999999999999999999999998865

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=92.64  E-value=0.038  Score=43.04  Aligned_cols=37  Identities=32%  Similarity=0.442  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      .+.+++|+|||+|..|..++..|...+ ++++++.|+.
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            467999999999999999999998875 5788888863

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=92.60  E-value=0.056  Score=42.36  Aligned_cols=35  Identities=23%  Similarity=0.325  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      ++|+|+|+|+|-+|--++..|.+.+ ++|+++.|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            5889999999999999999998875 6899998874

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=92.53  E-value=0.033  Score=48.25  Aligned_cols=32  Identities=31%  Similarity=0.492  Sum_probs=30.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+-+|..|++.+.+|.++.+.+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            69999999999999999999999999999865

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=92.40  E-value=0.04  Score=49.07  Aligned_cols=35  Identities=17%  Similarity=0.135  Sum_probs=31.4

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCcee
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYHY  172 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~~  172 (396)
                      .|+|||+|..|+-+|..|++.+.+|.++.+.+.|.
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~   43 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWD   43 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            59999999999999999999999999999865443

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=92.34  E-value=0.18  Score=43.71  Aligned_cols=59  Identities=15%  Similarity=0.029  Sum_probs=44.2

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCe---EEEEEccCc--EEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDI---WEVELSNGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~---~~V~~~~g~--~~~~d~vvvAtG~~~  107 (396)
                      ....+.+.|...+.+.+++  |+++++|+++..+ +++   ..+...++.  .+.+++||+|||.++
T Consensus       150 ~~~~~~~~l~~~a~~~gv~--i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~  214 (322)
T d1d4ca2         150 VGAHVAQVLWDNAVKRGTD--IRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  214 (322)
T ss_dssp             SHHHHHHHHHHHHHHTTCE--EETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             hhHHHHHHHHHHHHhcCce--EEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCCcc
Confidence            3678899999999999987  9999999998775 332   222222332  478999999999854

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=92.24  E-value=0.23  Score=42.85  Aligned_cols=59  Identities=17%  Similarity=0.155  Sum_probs=44.3

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeE---EEEEccCc--EEEcCEEEEcccCCC
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIW---EVELSNGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~---~V~~~~g~--~~~~d~vvvAtG~~~  107 (396)
                      .+.++.+.|...+++.++.  ++++++|+++..+ +++-   .+...++.  .+.++.||+|||.+.
T Consensus       146 ~g~~i~~~L~~~~~~~g~~--i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~  210 (317)
T d1qo8a2         146 SGPEIIDTLRKAAKEQGID--TRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  210 (317)
T ss_dssp             HHHHHHHHHHHHHHHTTCC--EECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             cchhhhHHHHHHhhhccce--eeeccchhheeecccccceeeEeecccceEEEEeccceEEeccccc
Confidence            4578999999999999987  9999999998665 3332   22223443  367999999999854

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=92.21  E-value=0.062  Score=42.70  Aligned_cols=37  Identities=22%  Similarity=0.421  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~~  169 (396)
                      ++++|+|+|+|+|-+|--++..|.+. +++++++.|++
T Consensus        15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            57899999999999998888888886 56899999875

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=92.07  E-value=0.21  Score=41.06  Aligned_cols=55  Identities=9%  Similarity=0.021  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHc-CCCCceEeCcEEEEEEEeCCe-EEEEEccCcEEEcCEEEEcccCC
Q psy2343          49 SMMLDYLRSYAKKF-DVYNHSIFNTEVINLEQYEDI-WEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        49 ~~~~~Yl~~~~~~~-~l~~~i~~~t~V~~v~~~~~~-~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      ..+.+.++...+.. +|.  + ++.+|+++..++++ .-|.+.+|.++.+++||||||.+
T Consensus        67 ~a~raQ~k~~l~~~~nL~--i-~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          67 WAFHARAKYLLEGLRPLH--L-FQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             HHHHHHHHHHHHTCTTEE--E-EECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             hhHHHHHHHHHhhhcCHH--H-HhccceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence            33444455555443 443  3 46678887776554 45888899889999999999983

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=92.02  E-value=0.049  Score=48.31  Aligned_cols=34  Identities=12%  Similarity=0.113  Sum_probs=31.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccCce
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRGYH  171 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~~~  171 (396)
                      .|+|||+|..|+=+|..|++.+.+|.++.+...|
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~   37 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLW   37 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCCC
Confidence            5999999999999999999999999999996544

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=91.77  E-value=0.051  Score=47.35  Aligned_cols=32  Identities=28%  Similarity=0.446  Sum_probs=30.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+-+|..|++.+.+|.++.+.+
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999865

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.66  E-value=0.045  Score=41.01  Aligned_cols=33  Identities=21%  Similarity=0.288  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      |+++|+|.|..|..+|..|.+.+.+|+++...+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            689999999999999999999999999998764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.59  E-value=0.075  Score=42.54  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=34.4

Q ss_pred             CCCCCCeEEEEc-CCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVG-AGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG-~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+++||+|+|.| +|-.|..+|..+++.+.+|+++.|+.
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            468899999999 68899999999999999999999874

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=91.54  E-value=0.035  Score=44.44  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      |+|+|||+|..|..+|..++..+.+|+++.+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            689999999999999999999999999998864

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=91.47  E-value=0.32  Score=41.51  Aligned_cols=58  Identities=16%  Similarity=0.093  Sum_probs=42.6

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeC-CeEE-EEEc--cCc--EEEcCEEEEcccCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYE-DIWE-VELS--NGK--KKKYDFIAVCNGAQR  107 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~-~~~~-V~~~--~g~--~~~~d~vvvAtG~~~  107 (396)
                      ...+...+.+.+.+.++.  |+++++|+++-.++ ++.. |...  ++.  .+.+++||+|||.++
T Consensus       144 ~~~~~~~l~~~a~~~gv~--i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~  207 (308)
T d1y0pa2         144 GAHVVQVLYDNAVKRNID--LRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA  207 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCE--EESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHHhccce--EEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCccc
Confidence            356788888888888987  99999999987763 3322 3332  232  478999999999854

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.32  E-value=0.18  Score=39.87  Aligned_cols=57  Identities=18%  Similarity=0.335  Sum_probs=46.5

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccC
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGA  105 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~  105 (396)
                      .....++.+.+...+.++++.  +.+ .+|+.+...++.|+|+...+ ...++.+++|+|.
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~--~~~-~~V~~~~~~~~~~~v~~~~~-~~~~~~viva~G~  114 (190)
T d1trba1          58 DLTGPLLMERMHEHATKFETE--IIF-DHINKVDLQNRPFRLNGDNG-EYTCDALIIATGA  114 (190)
T ss_dssp             SCBHHHHHHHHHHHHHHTTCE--EEC-CCEEEEECSSSSEEEEESSC-EEEEEEEEECCCE
T ss_pred             ccchHHHHHHHHHHHHhcCcE--Eec-ceeEEEecCCCcEEEEEeee-eEeeeeeeeecce
Confidence            346789999999999999875  544 47888888888888877655 4789999999998

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.98  E-value=0.056  Score=47.06  Aligned_cols=32  Identities=31%  Similarity=0.489  Sum_probs=30.0

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+-.|.++++.+.+|.++.+.+
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            69999999999999999999999999999865

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=90.53  E-value=0.078  Score=46.25  Aligned_cols=32  Identities=22%  Similarity=0.224  Sum_probs=29.5

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+=.|..+++.+.+|.++...+
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            49999999999999999999999999998754

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.46  E-value=0.048  Score=47.40  Aligned_cols=35  Identities=29%  Similarity=0.284  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~  169 (396)
                      .+++|+|||+|.+|+.+|..|++.  +.+|+++.+.+
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            467899999999999999999964  78999999875

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=90.41  E-value=0.1  Score=41.13  Aligned_cols=41  Identities=20%  Similarity=0.349  Sum_probs=33.1

Q ss_pred             eEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCCCCCCCC
Q psy2343          68 SIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQRVARYP  112 (396)
Q Consensus        68 i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P  112 (396)
                      ++++++|++++.+.  ..+++.+|+++.||.||+|+|.  .|+..
T Consensus        72 ~~~~~~v~~i~~~~--~~~~~~~g~~~~~D~vi~a~G~--~p~~~  112 (183)
T d1d7ya1          72 WLLGVTAQSFDPQA--HTVALSDGRTLPYGTLVLATGA--APRAV  112 (183)
T ss_dssp             EEETCCEEEEETTT--TEEEETTSCEEECSEEEECCCE--EECCE
T ss_pred             EEEecccccccccc--ceeEecCCcEeeeeeEEEEEEE--Ecccc
Confidence            67788888887543  3677889999999999999998  67643

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=90.31  E-value=0.11  Score=46.56  Aligned_cols=42  Identities=19%  Similarity=0.343  Sum_probs=35.4

Q ss_pred             CCCCCCCCCC--eEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         128 YKSPDQIRNK--RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       128 ~~~~~~~~~k--~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      ..+++++.||  .++|||+|.+|+=+|..|++.. .+|.++.+.+
T Consensus        14 ~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          14 LSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             BCCGGGTTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             cCCcccccCCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            4456667777  5999999999999999999986 4899999875

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.30  E-value=0.17  Score=40.22  Aligned_cols=57  Identities=12%  Similarity=0.093  Sum_probs=46.1

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      ....++...++..+++|+..  +.+. +|.+++..++.|.+.+..+ ...+|.+++|+|..
T Consensus        64 ~~~~el~~~~~~q~~~~g~~--i~~~-~V~~~~~~~~~~~v~~~~~-~~~~~~~~~a~g~~  120 (192)
T d1vdca1          64 ILGVELTDKFRKQSERFGTT--IFTE-TVTKVDFSSKPFKLFTDSK-AILADAVILAIGAV  120 (192)
T ss_dssp             EEHHHHHHHHHHHHHHTTCE--EECC-CCCEEECSSSSEEEECSSE-EEEEEEEEECCCEE
T ss_pred             ccchHHHHHHHHHHHhhcce--eeee-eEEecccccCcEEecccce-eeeeeeEEEEeeee
Confidence            45799999999999999986  6544 7888888777788876544 47899999999974

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=90.29  E-value=0.081  Score=46.68  Aligned_cols=32  Identities=28%  Similarity=0.344  Sum_probs=30.0

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|..|+=+|..|++.+.+|.++.+.+
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~   37 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGE   37 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecCC
Confidence            59999999999999999999999999999864

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=90.12  E-value=0.077  Score=41.75  Aligned_cols=110  Identities=14%  Similarity=0.054  Sum_probs=63.5

Q ss_pred             ChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEe---CCeEEEEEccCcEEEcCEEEEcccCCCCCCCC---CCCCCccc
Q psy2343          47 NHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQY---EDIWEVELSNGKKKKYDFIAVCNGAQRVARYP---NYSGYFSG  120 (396)
Q Consensus        47 ~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~---~~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P---~~~g~~~g  120 (396)
                      ...++.+.++..+++++..  ......+..+.+.   ...+.....+..++.++.+++++|........   .......|
T Consensus        54 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g  131 (184)
T d1fl2a1          54 EGQKLAGALKVHVDEYDVD--VIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMG  131 (184)
T ss_dssp             EHHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTS
T ss_pred             hhHHHHHHHHHHhhheece--eeccceeeeecccccccceeeeeeecceeeecccccccccccccccccccccccccccc
Confidence            3678888899999988765  5556667777664   33445555566678999999999973211111   11111112


Q ss_pred             ce------------eecccCCCCCCCCCCeEEEEcCCCcHHHHHHHHhcC
Q psy2343         121 EI------------LHSMDYKSPDQIRNKRVLVVGAGNSGCDIAVDASHH  158 (396)
Q Consensus       121 ~~------------~hs~~~~~~~~~~~k~VvVVG~G~sa~d~a~~l~~~  158 (396)
                      .+            ++.+--+....++.+-+++.||+.+|.+++..|.+.
T Consensus       132 ~i~v~~~~~t~~~gv~a~gd~~~~~~~~~vva~g~G~~aA~~~~~~l~~~  181 (184)
T d1fl2a1         132 EIIIDAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRT  181 (184)
T ss_dssp             CBCCCTTCBCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             eeccCCceeeeCCCEEEEeeecCcccCCcEEEEECcHHHHHHHHHHHhhc
Confidence            11            122212222233443444556667788888888764

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=89.92  E-value=0.1  Score=40.59  Aligned_cols=33  Identities=24%  Similarity=0.225  Sum_probs=26.9

Q ss_pred             CeEEEEEccCcEEEcCEEEEcccCCCCCCCCCCCC
Q psy2343          82 DIWEVELSNGKKKKYDFIAVCNGAQRVARYPNYSG  116 (396)
Q Consensus        82 ~~~~V~~~~g~~~~~d~vvvAtG~~~~p~~P~~~g  116 (396)
                      ....+.+.+++++.||.||+|||.  .|+.+.+++
T Consensus        83 ~~~~~~~~~~~~i~~D~li~atG~--~~~~~~i~~  115 (186)
T d1fcda1          83 DKKLVKTAGGAEFGYDRCVVAPGI--ELIYDKIEQ  115 (186)
T ss_dssp             TTTEEEETTSCEEECSEEEECCCE--EECCTTSTE
T ss_pred             ccceeecccceeeccceEEEEecc--ccchhhhhh
Confidence            344677778888999999999999  788777765

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.65  E-value=0.1  Score=38.86  Aligned_cols=32  Identities=16%  Similarity=0.282  Sum_probs=29.7

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|+|+|..|..+|..|.+.+.+|+++...+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            69999999999999999999999999998765

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=89.47  E-value=0.11  Score=45.23  Aligned_cols=33  Identities=36%  Similarity=0.336  Sum_probs=29.0

Q ss_pred             eEEEEcCCCcHHHHHHHHh-----cCCCcEEEEeccCc
Q psy2343         138 RVLVVGAGNSGCDIAVDAS-----HHSEKVYHSTRRGY  170 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~-----~~~~~V~l~~r~~~  170 (396)
                      .|+|||||.+|+=+|..|+     +.+-+|+++.|++.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            5999999999999999996     45778999999863

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.21  E-value=0.023  Score=47.11  Aligned_cols=31  Identities=32%  Similarity=0.382  Sum_probs=25.0

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCC------cEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSE------KVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~------~V~l~~r~  168 (396)
                      ||+|||+|.+|+-+|..|++.+.      +++++.+.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~   38 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADR   38 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence            69999999999999999998754      45555543

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=89.01  E-value=0.077  Score=44.61  Aligned_cols=54  Identities=17%  Similarity=0.150  Sum_probs=29.5

Q ss_pred             CcEEEcCEEEEcccCCCCC--CCCCCCC-Cccc-ceeecccCCCCCCCCCCeEEEEcCCCcH
Q psy2343          91 GKKKKYDFIAVCNGAQRVA--RYPNYSG-YFSG-EILHSMDYKSPDQIRNKRVLVVGAGNSG  148 (396)
Q Consensus        91 g~~~~~d~vvvAtG~~~~p--~~P~~~g-~~~g-~~~hs~~~~~~~~~~~k~VvVVG~G~sa  148 (396)
                      ++++++|+||||||+  .|  ..+.+|+ .+.. .++.+..+......  .+.+|+|+|..|
T Consensus       136 ~~~i~a~~iiIATGs--~P~~~~~~~~~~~l~~~~i~ts~~~~~~d~~--~~t~Vig~gaiG  193 (259)
T d1onfa1         136 EEILEGRNILIAVGN--KPVGRSPDTENLKLEKLNVETNNNYIVVDEN--QRTSVNNIYAVG  193 (259)
T ss_dssp             ----CBSSEEECCCC--CBCCBCCTTTTSSCTTTTCCBSSSCEEECTT--CBCSSSSEEECS
T ss_pred             eEEEeeeeEEEecCC--CCccccccccccccccceeeecccccccccC--CceeEeeEEEEE
Confidence            345899999999999  66  3344554 2322 23344333333232  355788888776

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=88.68  E-value=0.23  Score=39.23  Aligned_cols=37  Identities=22%  Similarity=0.285  Sum_probs=33.6

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+.||+|.|||.|..|..+|..+...+.+|+.+.|.+
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccCceEEEeccccccccceeeeeccccccccccccc
Confidence            4789999999999999999999999999999998764

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=88.66  E-value=0.084  Score=46.16  Aligned_cols=32  Identities=22%  Similarity=0.317  Sum_probs=29.7

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|..|+-.|.++++.+.+|.++.+.+
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~   40 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF   40 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            59999999999999999999999999998764

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=88.62  E-value=0.089  Score=42.06  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++|+|||+|.-|.=+|..|++.+.+|++..|.+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            479999999999999999999988999998864

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.35  E-value=0.55  Score=35.80  Aligned_cols=51  Identities=16%  Similarity=0.122  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccC-cEEEcCEEEEcccC
Q psy2343          51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNG-KKKKYDFIAVCNGA  105 (396)
Q Consensus        51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g-~~~~~d~vvvAtG~  105 (396)
                      ...++....++.++.  +..+++|..++  +++..+...+. ..+.||.||+|+|.
T Consensus       110 ~~~~~~~~~~~~gv~--~~~~~~v~~i~--~~gv~~~~~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         110 TGWIHRTTLLSRGVK--MIPGVSYQKID--DDGLHVVINGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             THHHHHHHHHHTTCE--EECSCEEEEEE--TTEEEEEETTEEEEECCSEEEECCCE
T ss_pred             hhHHHHHHHhhCCeE--EEeeeEEEEEc--CCCCEEecCCeEEEEECCEEEECCCC
Confidence            355567777888876  78899999887  44444544332 24789999999995

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=87.89  E-value=0.29  Score=40.92  Aligned_cols=37  Identities=24%  Similarity=0.252  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +++||.|+|.|++. .|.++|..+++.+.+|.++.|+.
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~   39 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV   39 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            47899999999775 89999999999999999998875

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.80  E-value=0.14  Score=45.67  Aligned_cols=32  Identities=25%  Similarity=0.394  Sum_probs=29.0

Q ss_pred             eEEEEcCCCcHHHHHHHHhc------CCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASH------HSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~------~~~~V~l~~r~~  169 (396)
                      .|+|||||.+|.=+|..|++      .+-+|.++.|..
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            69999999999999999987      577999999875

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.80  E-value=0.007  Score=50.35  Aligned_cols=51  Identities=20%  Similarity=0.208  Sum_probs=31.7

Q ss_pred             CCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEEEEEccCcEEEcCEEEEcccCC
Q psy2343          45 YPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWEVELSNGKKKKYDFIAVCNGAQ  106 (396)
Q Consensus        45 ~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~V~~~~g~~~~~d~vvvAtG~~  106 (396)
                      ++....+..+........++.  ++++++|..     +   ++..+- ...||+|++|||+.
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~-----~---~~~~~l-~~~~d~v~~a~Ga~  100 (230)
T d1cjca2          50 HPEVKNVINTFTQTARSDRCA--FYGNVEVGR-----D---VTVQEL-QDAYHAVVLSYGAE  100 (230)
T ss_dssp             CGGGGGHHHHHHHHHTSTTEE--EEBSCCBTT-----T---BCHHHH-HHHSSEEEECCCCC
T ss_pred             ccccccchhhhhhhhhcCCee--EEeeEEeCc-----c---ccHHHH-HhhhceEEEEeecc
Confidence            445667778877788777765  666765411     0   111110 13599999999983

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=87.52  E-value=0.085  Score=46.76  Aligned_cols=59  Identities=15%  Similarity=0.127  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEcc----C-----cEEEcCEEEEcccCCCCCC
Q psy2343          50 MMLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELSN----G-----KKKKYDFIAVCNGAQRVAR  110 (396)
Q Consensus        50 ~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~~----g-----~~~~~d~vvvAtG~~~~p~  110 (396)
                      ....||....++-++.  |+.+++|++|..+ ++.+.|....    +     +++.+|.||||.|+...|.
T Consensus       224 ~~~~~L~~a~~~g~~~--i~t~~~V~~I~~~~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~Tp~  292 (370)
T d3coxa1         224 LDKTYLAQAAATGKLT--ITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSK  292 (370)
T ss_dssp             GGGTHHHHHHHTTCEE--EECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHH
T ss_pred             hHHHHHHHHHhCCCcE--EEecCcEEEEEEcCCCeEEEEEEEeCCccceeeEEEEECCEEEEeeCHHHhHH
Confidence            3455787766665565  9999999999997 5556666531    2     2478999999999865554

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=87.28  E-value=0.27  Score=39.22  Aligned_cols=39  Identities=21%  Similarity=0.263  Sum_probs=34.1

Q ss_pred             CCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         131 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       131 ~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..++.||+|.|||.|..|-.+|..+...+-+|....+..
T Consensus        44 ~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          44 AARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             ceeeeCceEEEeccccccccceeeeeccccceeeccCcc
Confidence            346889999999999999999999999988888877653

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=87.20  E-value=0.18  Score=44.54  Aligned_cols=32  Identities=34%  Similarity=0.398  Sum_probs=29.7

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++|||+|.+|+=+|..|++.+.+|.++.+.+
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            58999999999999999999999999999874

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=87.16  E-value=0.59  Score=39.25  Aligned_cols=100  Identities=11%  Similarity=0.042  Sum_probs=58.8

Q ss_pred             CCCCccccccCCCCCCCCCCceeeecCCCcc--ccC-CCCCCC-CCCCCCChHHHHHHHHHHHHHcCCCCceEeCcEEEE
Q psy2343           1 MESDLGGVWNSQASCGRVYPSLHLISPKFNT--QVP-DYPMPD-NYPVYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVIN   76 (396)
Q Consensus         1 ~~~~iGG~W~~~~~~~~~y~~~~~~~~~~~~--~~~-~~p~p~-~~~~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~   76 (396)
                      |++.+||.|.+.   +..|+...+.......  ++. .|..+. ..+.......+..++..+++..+..  +.+++++..
T Consensus        65 ~~~~~GG~~~~~---g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  139 (278)
T d1rp0a1          65 QSVSPGGGAWLG---GQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVK--LFNAVAAED  139 (278)
T ss_dssp             SSSSCCTTTTCC---STTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHHHHHHHHHHHHHTSTTEE--EEETEEEEE
T ss_pred             cCCCCCCceeec---CEEcCHHHHhhhHHHHHHHcCCceecCCccceecccHHHHHHHHHHHHHhCCCE--EEeCCccee
Confidence            467899999865   3456666655443321  110 121122 2223345667777777777765554  788888888


Q ss_pred             EEEeCCeEE-EEE-c-------------cCcEEEcCEEEEcccC
Q psy2343          77 LEQYEDIWE-VEL-S-------------NGKKKKYDFIAVCNGA  105 (396)
Q Consensus        77 v~~~~~~~~-V~~-~-------------~g~~~~~d~vvvAtG~  105 (396)
                      +..++++.. +.. .             ++.++.++.||+|+|.
T Consensus       140 ~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~  183 (278)
T d1rp0a1         140 LIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGH  183 (278)
T ss_dssp             EEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCS
T ss_pred             eeecCCeEEEEEeccceeeeeecccccccceeeccceEEECcCC
Confidence            776644321 111 0             1245788999999997

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=87.15  E-value=0.2  Score=44.68  Aligned_cols=42  Identities=14%  Similarity=0.299  Sum_probs=34.7

Q ss_pred             CCCCCCCCCC--eEEEEcCCCcHHHHHHHHhcCC-CcEEEEeccC
Q psy2343         128 YKSPDQIRNK--RVLVVGAGNSGCDIAVDASHHS-EKVYHSTRRG  169 (396)
Q Consensus       128 ~~~~~~~~~k--~VvVVG~G~sa~d~a~~l~~~~-~~V~l~~r~~  169 (396)
                      ..+++++.+|  .++|||+|.+|+=+|..|++.. .+|-++.+.+
T Consensus         7 ~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1           7 LTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             BCCGGGTTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             hCCcccccCCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            3456667777  6999999999999999999875 5899999875

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=87.08  E-value=0.25  Score=41.61  Aligned_cols=33  Identities=24%  Similarity=0.423  Sum_probs=30.5

Q ss_pred             CeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      |||+|.|| |..|..++..|.+.+.+|+.+.|.+
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            68999996 9999999999999999999999975

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=86.95  E-value=0.28  Score=37.99  Aligned_cols=36  Identities=19%  Similarity=0.225  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .+..+|+|+|+|..|...+..+.+.+.+|+++..+.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            356799999999999999999999999999998764

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=86.90  E-value=0.19  Score=43.87  Aligned_cols=36  Identities=22%  Similarity=0.215  Sum_probs=32.8

Q ss_pred             CCCCeEEEEc-CCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVG-AGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG-~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++||+|+|.| +|..|..++..|.+.+.+|+.+.|..
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            5899999999 78999999999999999999998864

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.81  E-value=0.26  Score=39.48  Aligned_cols=35  Identities=20%  Similarity=0.301  Sum_probs=31.7

Q ss_pred             CCCeEEEEc-CCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVG-AGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG-~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..|+|+|.| +|..|..++..|++.+.+|+++.|++
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            358999999 59999999999999999999999975

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.51  E-value=0.21  Score=39.29  Aligned_cols=32  Identities=28%  Similarity=0.488  Sum_probs=29.3

Q ss_pred             eEEEE-cCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVV-GAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVV-G~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|+|| |+|..|.-+|..|++.+.+|.+..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            68999 679999999999999999999999875

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=86.45  E-value=0.24  Score=39.81  Aligned_cols=38  Identities=18%  Similarity=0.114  Sum_probs=33.8

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++.||+|.|||.|..|..+|..+...+-+|+...+..
T Consensus        41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccccceeeeeeecccccccccccccccceeeeccCCcc
Confidence            46789999999999999999999999999998887754

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=86.45  E-value=0.21  Score=40.01  Aligned_cols=37  Identities=24%  Similarity=0.206  Sum_probs=32.6

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      .++.||+|.|||-|..|..+|..+...+-+|....+.
T Consensus        39 ~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~   75 (197)
T d1j4aa1          39 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF   75 (197)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccccCCeEEEecccccchhHHHhHhhhcccccccCcc
Confidence            3578999999999999999999999988888877654

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=86.44  E-value=0.28  Score=41.57  Aligned_cols=33  Identities=30%  Similarity=0.367  Sum_probs=29.9

Q ss_pred             CeEEEEcC-CCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGA-GNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~-G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++|+|+|| |..|..++..|.+.+.+|+.+.|++
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            46999995 9999999999999999999999965

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.39  E-value=0.42  Score=39.55  Aligned_cols=38  Identities=21%  Similarity=0.225  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         132 DQIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +.++||.++|.|++. .|.++|..+++.+.+|.++.|+.
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            468899999998776 89999999999999999999874

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=86.38  E-value=0.11  Score=45.85  Aligned_cols=59  Identities=14%  Similarity=0.141  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHcCCCCceEeCcEEEEEEEe-CCeEEEEEc----cC-----cEEEcCEEEEcccCCCCCCC
Q psy2343          51 MLDYLRSYAKKFDVYNHSIFNTEVINLEQY-EDIWEVELS----NG-----KKKKYDFIAVCNGAQRVARY  111 (396)
Q Consensus        51 ~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~-~~~~~V~~~----~g-----~~~~~d~vvvAtG~~~~p~~  111 (396)
                      ...||....++-++.  |+.+++|++|..+ ++.+.|.+.    ++     +++.+|.||||.|+...|.+
T Consensus       221 ~~~yl~~a~~~gn~~--i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~Tp~L  289 (367)
T d1n4wa1         221 DKTYLAAALGTGKVT--IQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTEL  289 (367)
T ss_dssp             TTTHHHHHHHTTSEE--EEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHH
T ss_pred             hHhhhHHHHhCCCeE--EECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecCEEEEecchhcCHHH
Confidence            345776655554455  9999999999987 556666542    12     24789999999998666654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.80  E-value=0.21  Score=39.41  Aligned_cols=31  Identities=23%  Similarity=0.300  Sum_probs=28.9

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEecc
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRR  168 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~  168 (396)
                      +|.|||+|+-|.=+|..|++.+.+|++..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            6899999999999999999999999999875

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.52  E-value=0.24  Score=33.00  Aligned_cols=33  Identities=21%  Similarity=0.228  Sum_probs=29.7

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      |+|.|+|+|+-|--++.+..+.+-+|+++...+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            689999999999999999999998998888654

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.44  E-value=0.76  Score=35.62  Aligned_cols=40  Identities=15%  Similarity=0.260  Sum_probs=33.4

Q ss_pred             CCCCCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         130 SPDQIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       130 ~~~~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ...+++||+|+|||-+ ..|.=+|..|++.+..|++++...
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~   63 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNN   63 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSE
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEecccc
Confidence            3447899999999966 569999999999988999887654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.06  E-value=0.54  Score=40.14  Aligned_cols=43  Identities=19%  Similarity=0.320  Sum_probs=36.2

Q ss_pred             cCCCCCCCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         127 DYKSPDQIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       127 ~~~~~~~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|..+..++||.++|.|++. .|..+|..|++.+.+|.+..|+.
T Consensus         3 ~y~~~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1           3 SYLAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             CSBCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46666678999999999654 78899999999999999999864

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=84.93  E-value=0.36  Score=38.70  Aligned_cols=36  Identities=22%  Similarity=0.297  Sum_probs=32.3

Q ss_pred             CCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEec
Q psy2343         132 DQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTR  167 (396)
Q Consensus       132 ~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r  167 (396)
                      ..++||+|+|.|.|+.|.-+|..|.+.+.+|+++..
T Consensus        23 ~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~   58 (201)
T d1c1da1          23 GSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADT   58 (201)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecc
Confidence            468999999999999999999999999998887654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.79  E-value=0.49  Score=33.89  Aligned_cols=34  Identities=24%  Similarity=0.477  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +.+|.|+|||+-|.-+|....+.+-+|+++.+.+
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~   44 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYA   44 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4689999999999999999999999999998765

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=84.78  E-value=0.49  Score=37.41  Aligned_cols=39  Identities=15%  Similarity=0.142  Sum_probs=34.3

Q ss_pred             CCCCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         131 PDQIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       131 ~~~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ..++.+++|.|||.|.+|.++|..+...+-+|....|..
T Consensus        39 ~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          39 AYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             ceeccccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence            446789999999999999999999999888898888753

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=84.72  E-value=0.45  Score=40.36  Aligned_cols=39  Identities=21%  Similarity=0.334  Sum_probs=33.5

Q ss_pred             CCCCCCCeEEEEcCC---CcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         131 PDQIRNKRVLVVGAG---NSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       131 ~~~~~~k~VvVVG~G---~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +.+++||+++|.|++   -.|..+|..|++.+.+|.+..|.+
T Consensus         3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~   44 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP   44 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence            346899999999986   478999999999999999988864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=84.63  E-value=0.4  Score=37.63  Aligned_cols=35  Identities=29%  Similarity=0.355  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +..+|+|+|+|..|...+......+.+|+++..+.
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            45699999999999999999999999999999775

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.34  E-value=0.3  Score=37.05  Aligned_cols=35  Identities=20%  Similarity=0.341  Sum_probs=29.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343         135 RNKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG  169 (396)
Q Consensus       135 ~~k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~  169 (396)
                      .+++|.|||+|..|.-+|..|+..  +.++.++.+.+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            467999999999999999998774  67888887643

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=84.34  E-value=0.28  Score=37.16  Aligned_cols=34  Identities=21%  Similarity=0.349  Sum_probs=29.0

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~  169 (396)
                      .++|+|||+|..|.-+|..|+..  +.++.++.+..
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            56899999999999999998874  57899998653

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=84.27  E-value=0.39  Score=42.08  Aligned_cols=31  Identities=35%  Similarity=0.558  Sum_probs=28.1

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++|||+|.+|+=+|..|++. .+|.++.+.+
T Consensus        28 D~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          28 DYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             EEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             cEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            799999999999999999985 7899999875

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=84.07  E-value=0.38  Score=40.19  Aligned_cols=37  Identities=19%  Similarity=0.242  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++||.++|.|++. .|..+|..|++.+.+|.+..|+.
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   43 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA   43 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47899999999765 78899999999999999999875

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=84.06  E-value=0.46  Score=39.44  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=31.4

Q ss_pred             CCCCeEEEEcCCC---cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAGN---SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G~---sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++||.|+|.|++.   .|..+|..|++.+.+|++..|+.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~   41 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   41 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence            6899999999764   67899999999999999998874

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=84.00  E-value=0.44  Score=39.72  Aligned_cols=36  Identities=22%  Similarity=0.259  Sum_probs=30.7

Q ss_pred             CCCCeEEEEcC-CC--cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGA-GN--SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~-G~--sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++||+++|.|+ |.  .|..+|..|++.+.+|.+..|..
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            67999999995 44  57889999999999999988764

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=83.86  E-value=0.53  Score=38.78  Aligned_cols=37  Identities=19%  Similarity=0.230  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++||.++|.|++. .|..+|..|++.+.+|++..|+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            36899999999776 89999999999999999999875

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.82  E-value=1.4  Score=34.58  Aligned_cols=37  Identities=22%  Similarity=0.359  Sum_probs=33.3

Q ss_pred             CCCCCeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++.+++|.|||.|..|..+|..+...+-+|+...+..
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d1sc6a1          41 EARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN   77 (188)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccceEEEEeecccchhhhhhhcccccceEeeccccc
Confidence            5789999999999999999999998988998888754

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=83.64  E-value=0.5  Score=40.53  Aligned_cols=58  Identities=7%  Similarity=0.108  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeEE----EEEccCcE--EEcCEEEEcccCCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIWE----VELSNGKK--KKYDFIAVCNGAQR  107 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~~----V~~~~g~~--~~~d~vvvAtG~~~  107 (396)
                      +..+...+...+++-+++  |..+++|+++-.++++-.    +...+|+.  +.+++||+|||.++
T Consensus       134 ~~~~~~~l~~~~~~~~v~--i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g  197 (311)
T d1kf6a2         134 FHMLHTLFQTSLQFPQIQ--RFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  197 (311)
T ss_dssp             HHHHHHHHHHHTTCTTEE--EEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred             hHHHHhHHHHHHccCcce--eEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCcc
Confidence            345555666666555666  888999999877765432    22245653  57899999999853

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.56  E-value=0.58  Score=38.84  Aligned_cols=37  Identities=24%  Similarity=0.322  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEcCC---CcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAG---NSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G---~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +++||.++|.|++   -.|..+|..|++.+.+|.+..|..
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            5789999999975   378999999999999998877754

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.54  E-value=0.41  Score=40.18  Aligned_cols=37  Identities=24%  Similarity=0.406  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++||+++|.|++. .|..+|..|++.+.+|.++.|+.
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            37899999999765 78999999999999999999874

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=83.54  E-value=1  Score=38.67  Aligned_cols=57  Identities=16%  Similarity=0.030  Sum_probs=43.2

Q ss_pred             hHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE-EEEE---ccCcE--EEcCEEEEcccCC
Q psy2343          48 HSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVEL---SNGKK--KKYDFIAVCNGAQ  106 (396)
Q Consensus        48 ~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~-~V~~---~~g~~--~~~d~vvvAtG~~  106 (396)
                      +..+..-|...+.+.++.  |+.+++|+++..++++- -+..   .+|+.  +.++.||+|||.+
T Consensus       157 G~~i~~~l~~~~~~~gv~--i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~  219 (336)
T d2bs2a2         157 GHTMLFAVANECLKLGVS--IQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY  219 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCE--EECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHHhcccc--ccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEecccc
Confidence            567888888889999987  99999999887775532 2222   34653  7789999999984

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=83.48  E-value=0.42  Score=36.14  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=31.0

Q ss_pred             CCeEEEEc-CCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVG-AGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG-~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      =|+|+||| .|..|.-+|..|.+.+-+|+++.|..
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            36999999 69999999999999999999998865

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=82.97  E-value=0.4  Score=36.88  Aligned_cols=32  Identities=25%  Similarity=0.350  Sum_probs=29.3

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +|.|||.|..|.-+|..|++.+.+|+.+.|++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            69999999999999999999999999988764

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.89  E-value=0.35  Score=42.10  Aligned_cols=32  Identities=31%  Similarity=0.511  Sum_probs=26.8

Q ss_pred             eEEEEcCCCcHHHHHHHHhc----CCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASH----HSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~----~~~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+=.|..+++    .+.+|.++.+.+
T Consensus        23 DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~   58 (356)
T d1jnra2          23 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   58 (356)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence            69999999999888888764    467899998753

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=82.82  E-value=0.64  Score=38.63  Aligned_cols=37  Identities=19%  Similarity=0.295  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +++||.++|.|++. .|..+|..|++.+.+|.+..|+.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999999764 78899999999998999999864

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=82.66  E-value=2.4  Score=30.67  Aligned_cols=59  Identities=10%  Similarity=0.035  Sum_probs=42.8

Q ss_pred             CCCChHHHHHHHHHHHHHcCCCCceEeCcEEEEEEEeCCeE-EEEEccC------cEEEcCEEEEccc
Q psy2343          44 VYPNHSMMLDYLRSYAKKFDVYNHSIFNTEVINLEQYEDIW-EVELSNG------KKKKYDFIAVCNG  104 (396)
Q Consensus        44 ~~p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v~~~~~~~-~V~~~~g------~~~~~d~vvvAtG  104 (396)
                      .|-..+.+.+.+++..++-++.  ++++++|.+|.-++.+. .|++.+.      +++.+|.|+++.|
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~i~--~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          61 GFRAEKILIKRLMDKVENGNII--LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             SCCCCHHHHHHHHHHHHTSSEE--EECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             cccchhHHHHHHHHhhccccee--EecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            3444667888888887776665  77899999999865434 3555431      3578999999987

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=82.60  E-value=0.35  Score=41.33  Aligned_cols=31  Identities=23%  Similarity=0.471  Sum_probs=27.3

Q ss_pred             eEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         138 RVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       138 ~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .|+|||+|.+|+=.|..+++.+ +|.++...+
T Consensus         9 DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~   39 (305)
T d1chua2           9 DVLIIGSGAAGLSLALRLADQH-QVIVLSKGP   39 (305)
T ss_dssp             SEEEECCSHHHHHHHHHHTTTS-CEEEECSSC
T ss_pred             CEEEECccHHHHHHHHHhhcCC-CEEEEECCC
Confidence            6999999999999999988877 899998754

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=82.58  E-value=0.9  Score=34.93  Aligned_cols=37  Identities=16%  Similarity=0.156  Sum_probs=32.4

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++.||+|+|||.+. .|.-+|..|.+.+..|++++.+.
T Consensus        34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             ccccceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            57899999999776 89999999999988999988654

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=82.57  E-value=0.59  Score=38.93  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++.||.|+|.|++. .|.++|..|++.+.+|.+..|+.
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~   40 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSS   40 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            57899999998664 78899999999999999887765

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=82.45  E-value=0.72  Score=38.55  Aligned_cols=36  Identities=17%  Similarity=0.259  Sum_probs=31.4

Q ss_pred             CCCCeEEEEcCC---CcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         134 IRNKRVLVVGAG---NSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       134 ~~~k~VvVVG~G---~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++||+++|.|++   -.|..+|..|++.+.+|++..|..
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            679999999964   378999999999999999999864

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.26  E-value=0.71  Score=38.02  Aligned_cols=37  Identities=32%  Similarity=0.379  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +++||+++|.|++ -.|..+|..|++.+.+|.+..|+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4789999999965 478899999999999999999864

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=82.11  E-value=0.39  Score=36.33  Aligned_cols=33  Identities=15%  Similarity=0.330  Sum_probs=27.2

Q ss_pred             CCeEEEEcCCCcHHHHHHHHhcC--CCcEEEEecc
Q psy2343         136 NKRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRR  168 (396)
Q Consensus       136 ~k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~  168 (396)
                      .|+|.|||+|..|..+|..|+..  +.++.++...
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            37999999999999999988764  5678887654

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=81.89  E-value=0.46  Score=41.33  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=31.0

Q ss_pred             CCeEEEEc-CCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         136 NKRVLVVG-AGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       136 ~k~VvVVG-~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      -|+|+|+| +|..|..++..|++.+.+|+++.|.+
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            47899999 59999999999999999999999965

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.48  E-value=1.8  Score=36.06  Aligned_cols=62  Identities=15%  Similarity=0.283  Sum_probs=43.8

Q ss_pred             CChHHHHHHHHHHHHHcCCCCceEeCcEEEEE-EEeCCeEEEEEc-cCc--EEEcCEEEEcccCCCCC
Q psy2343          46 PNHSMMLDYLRSYAKKFDVYNHSIFNTEVINL-EQYEDIWEVELS-NGK--KKKYDFIAVCNGAQRVA  109 (396)
Q Consensus        46 p~~~~~~~Yl~~~~~~~~l~~~i~~~t~V~~v-~~~~~~~~V~~~-~g~--~~~~d~vvvAtG~~~~p  109 (396)
                      .+...+.+.|...++..+..  +.++.+++.+ ..+++...|+.. +|+  ++.+|.||.|.|.++.-
T Consensus       100 ~~~~~l~~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~S~v  165 (292)
T d1k0ia1         100 YGQTEVTRDLMEAREACGAT--TVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGIS  165 (292)
T ss_dssp             CCHHHHHHHHHHHHHHTTCE--EESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCST
T ss_pred             ecHHHHHHHHHHHHHhCCCc--EEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCCCCCcc
Confidence            35678999999999888754  6666655544 444566667654 444  36899999999997643

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=81.34  E-value=0.82  Score=38.06  Aligned_cols=37  Identities=22%  Similarity=0.265  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++||.++|.|++. .|..+|..|++.+.+|.++.|+.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47899999999754 78899999999999999998864

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.90  E-value=0.82  Score=37.48  Aligned_cols=37  Identities=27%  Similarity=0.329  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++||+++|.|++. .|..+|..|++.+.+|.+..|+.
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~   41 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS   41 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            58999999999764 88999999999999999999875

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.90  E-value=1.1  Score=34.71  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCCC-cHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAGN-SGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G~-sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      +++||+|+|||.+. .|.=+|..|++.+..|++++.+.
T Consensus        36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t   73 (170)
T d1a4ia1          36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT   73 (170)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             ccccceEEEEecCCccchHHHHHHHhccCceEEEeccc
Confidence            67999999999765 89999999999999999998765

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.79  E-value=0.79  Score=35.03  Aligned_cols=33  Identities=15%  Similarity=0.180  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      ++|.|||-|.-|.-+|..|++.+.+|++..|++
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            579999999999999999999999999988864

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=80.74  E-value=0.52  Score=35.38  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=27.5

Q ss_pred             CeEEEEcCCCcHHHHHHHHhcC--CCcEEEEeccC
Q psy2343         137 KRVLVVGAGNSGCDIAVDASHH--SEKVYHSTRRG  169 (396)
Q Consensus       137 k~VvVVG~G~sa~d~a~~l~~~--~~~V~l~~r~~  169 (396)
                      ++|.|||+|..|.-+|..|+..  +.++.++.+..
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            4799999999999999998775  67899988764

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=80.70  E-value=0.85  Score=37.92  Aligned_cols=37  Identities=22%  Similarity=0.422  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEcCC-CcHHHHHHHHhcCCCcEEEEeccC
Q psy2343         133 QIRNKRVLVVGAG-NSGCDIAVDASHHSEKVYHSTRRG  169 (396)
Q Consensus       133 ~~~~k~VvVVG~G-~sa~d~a~~l~~~~~~V~l~~r~~  169 (396)
                      .++||.|+|.|++ -.|..+|..+++.+.+|.++.|+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999955 478899999999999999999874

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=80.44  E-value=0.24  Score=41.14  Aligned_cols=35  Identities=23%  Similarity=0.390  Sum_probs=30.1

Q ss_pred             CCCCeEEEEcCCCcHHHHHHHHhcC-CCcEEEEecc
Q psy2343         134 IRNKRVLVVGAGNSGCDIAVDASHH-SEKVYHSTRR  168 (396)
Q Consensus       134 ~~~k~VvVVG~G~sa~d~a~~l~~~-~~~V~l~~r~  168 (396)
                      +++++|+|||.|..|..+|..|++. ..+++++...
T Consensus        28 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          28 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            5678999999999999999999997 4678888653