Psyllid ID: psy2348

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRLH
Secondary Structure (PSIPRED)
cccccccccEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHcccEEccccccccHHHHHHcHHHHHHHHHccccccccccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHcccEEEEcHHHHHHHHHHHccHHHHHHHcccccccccccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MVTPSTFKEVLVHLdlkgappsltyLKEILPILAYTGATSLLIewedtlpyslgfdntnpfreTEIFIILAAAesnglasiplvplysdmdFVLKVKEFAKMRQNfndtrficpnarsSLDLVFKMIGRLH
Flexible Loop (DISEMBL)
MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFndtrficpnarssLDLVFKMIGRLH
Low Complexity Region (SEG)
MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRLH
Disordered region (IsUnstruct)
******FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMI****
Disordered Region (DISOPRED)
****ST**EVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRLH
Disordered Region (DISEMBL)
MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRLH
Disordered Region (DISPRO)
*****TFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRLH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	131	2.2.26 [Sep-21-2011]
Q3U4H6	486	Hexosaminidase D OS=Mus m	no	N/A	0.992	0.267	0.398	4e-18
Q8WVB3	486	Hexosaminidase D OS=Homo	no	N/A	0.946	0.255	0.402	1e-16
A6QNR0	346	Hexosaminidase D OS=Bos t	no	N/A	0.916	0.346	0.406	7e-16

>sp|Q3U4H6|HEXDC_MOUSE Hexosaminidase D OS=Mus musculus GN=Hexdc PE=1 SV=1

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 53/133 (39%), Positives = 73/133 (54%), Gaps = 3/133 (2%)

Query: 1   MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG---FDN 57
           M +P+ FK  LVHLDLKGAPP ++YL E+ P+    GA  LLIE+ED  PY         
Sbjct: 1   MSSPTPFKMRLVHLDLKGAPPKVSYLSEVFPLFHALGANGLLIEYEDMFPYEGHLRLLRA 60

Query: 58  TNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNAR 117
            + +  +E+  IL  A  + L  IPLV  +  M+FVLK   FA +R+       + P+  
Sbjct: 61  KHAYSPSEVTEILRLARLSELEVIPLVQTFGHMEFVLKHAAFAHLREVALFPNTLNPHEA 120

Query: 118 SSLDLVFKMIGRL 130
            SL LV  MI ++
Sbjct: 121 ESLALVQAMIDQI 133

Has hexosaminidase activity.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 5EC: 2

>sp|Q8WVB3|HEXDC_HUMAN Hexosaminidase D OS=Homo sapiens GN=HEXDC PE=2 SV=3

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/139 (40%), Positives = 72/139 (51%), Gaps = 15/139 (10%)

Query: 1   MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNP 60
           M   + F+  LVHLDLKGAPP ++YL EI P+    GA  LLIE+ED  PY        P
Sbjct: 1   MSGSTPFQMRLVHLDLKGAPPKVSYLSEIFPLFRALGANGLLIEYEDMFPYE------GP 54

Query: 61  FR---------ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRF 111
            R          +EI  IL  A  N L  IPLV  +  M+FVLK   FA +R+  +    
Sbjct: 55  LRLLRAKYAYSPSEIKEILHLAGLNELEVIPLVQTFGHMEFVLKHTAFAHLREVGSFPCT 114

Query: 112 ICPNARSSLDLVFKMIGRL 130
           + P+   SL LV  MI ++
Sbjct: 115 LNPHEAESLALVGAMIDQV 133

Has hexosaminidase activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

EC: 2

>sp|A6QNR0|HEXDC_BOVIN Hexosaminidase D OS=Bos taurus GN=HEXDC PE=2 SV=2

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 11  LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG---FDNTNPFRETEIF 67
           LVHLDLKGAPP + YL EI P+    GA  +LIE+ED  PY          + +  +EI 
Sbjct: 3   LVHLDLKGAPPKVCYLSEIFPLFRALGANGILIEYEDMFPYEGHLRLLRAKHAYSPSEIK 62

Query: 68  IILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMI 127
            IL  A  N L  IPLV  +  M+FVLK +  A +R+       + P+   SL LV  MI
Sbjct: 63  EILHLATLNELEVIPLVQTFGHMEFVLKHEALAHLREVARFPNTLNPHKEESLALVTAMI 122

Query: 128 GRL 130
            ++
Sbjct: 123 DQV 125

Has hexosaminidase activity.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
391326869	591	PREDICTED: hexosaminidase D-like [Metase	0.984	0.218	0.386	3e-20
195569971	710	GD19213 [Drosophila simulans] gi|1941989	0.969	0.178	0.415	4e-20
195348935	706	GM15285 [Drosophila sechellia] gi|194122	0.969	0.179	0.415	5e-20
194744877	704	GF18511 [Drosophila ananassae] gi|190627	0.969	0.180	0.415	7e-20
21357133	708	CG7985, isoform A [Drosophila melanogast	0.969	0.179	0.407	1e-19
347971594	705	AGAP004270-PA [Anopheles gambiae str. PE	0.916	0.170	0.382	2e-19
194900276	706	GG22715 [Drosophila erecta] gi|190651386	0.969	0.179	0.4	3e-19
195497552	828	GE25519 [Drosophila yakuba] gi|194182250	0.969	0.153	0.407	4e-19
427785613	546	Putative hexosaminidase d-like protein [	0.969	0.232	0.384	4e-19
195107341	703	GI23723 [Drosophila mojavensis] gi|19391	0.969	0.180	0.404	2e-18

>gi|391326869|ref|XP_003737932.1| PREDICTED: hexosaminidase D-like [Metaseiulus occidentalis]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 85/132 (64%), Gaps = 3/132 (2%)

Query: 2   VTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDN---T 58
           + P    + ++HLDLKGAP S+TYL++I+PIL   GAT LLIE+ED  PY    +N    
Sbjct: 99  IKPVKLPQKIIHLDLKGAPLSVTYLEQIMPILQQLGATGLLIEYEDMFPYHGKLENISAI 158

Query: 59  NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARS 118
           N +   +I  IL AA++N L  IPL+  +  ++  LK++EFA +R+  ++ + +CP+  +
Sbjct: 159 NSYSVNDIGRILEAAKANELTVIPLIQTFGHLEVALKLEEFANLREVPHNPQALCPSRNA 218

Query: 119 SLDLVFKMIGRL 130
           S+ L+ +M+ ++
Sbjct: 219 SVQLITEMLKQV 230

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195569971|ref|XP_002102982.1| GD19213 [Drosophila simulans] gi|194198909|gb|EDX12485.1| GD19213 [Drosophila simulans]

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/130 (41%), Positives = 80/130 (61%), Gaps = 3/130 (2%)

Query: 4   PSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS---LGFDNTNP 60
           P    E LVHLDLKGAPP L++LK++LP+L   GAT LLIE+ED  PYS         N 
Sbjct: 187 PRAPAERLVHLDLKGAPPKLSFLKQLLPVLRALGATGLLIEYEDMFPYSGVLQPLAAHNA 246

Query: 61  FRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSL 120
           ++E E+   L  A  +GL+ +PLV  +  M++VLK+  F +MR+     + ICP+   S+
Sbjct: 247 YKEDELRDFLECAALHGLSVMPLVQTFGHMEYVLKLSGFEQMRELAESPQSICPSQPQSM 306

Query: 121 DLVFKMIGRL 130
            L+ +M+ ++
Sbjct: 307 ALLEQMLTQV 316

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195348935|ref|XP_002041002.1| GM15285 [Drosophila sechellia] gi|194122607|gb|EDW44650.1| GM15285 [Drosophila sechellia]

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/130 (41%), Positives = 80/130 (61%), Gaps = 3/130 (2%)

Query: 4   PSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS---LGFDNTNP 60
           P    E LVHLDLKGAPP L++LK++LP+L   GAT LLIE+ED  PYS         N 
Sbjct: 183 PRAPAERLVHLDLKGAPPKLSFLKQLLPVLRALGATGLLIEYEDMFPYSGVLQPLAAHNA 242

Query: 61  FRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSL 120
           ++E E+   L  A  +GL+ +PLV  +  M++VLK+  F +MR+     + ICP+   S+
Sbjct: 243 YKEDELRDFLECAALHGLSVMPLVQTFGHMEYVLKLSGFEQMRELAESPQSICPSQPQSV 302

Query: 121 DLVFKMIGRL 130
            L+ +M+ ++
Sbjct: 303 ALLEQMLTQV 312

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194744877|ref|XP_001954919.1| GF18511 [Drosophila ananassae] gi|190627956|gb|EDV43480.1| GF18511 [Drosophila ananassae]

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 54/130 (41%), Positives = 80/130 (61%), Gaps = 3/130 (2%)

Query: 4   PSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS---LGFDNTNP 60
           P    E LVHLDLKGAPP L++LK++LP+L   GAT LLIE+ED  PYS         N 
Sbjct: 181 PRAPTERLVHLDLKGAPPKLSFLKQLLPMLRALGATGLLIEYEDMFPYSGVLQPLAAHNA 240

Query: 61  FRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSL 120
           ++E E+   L  A  +GL+ +PLV  +  M+FVLK+  F ++R+     + ICP+   S+
Sbjct: 241 YKEDELRDFLETAAVHGLSVMPLVQTFGHMEFVLKLSGFEQLRELTESPQSICPSQPQSM 300

Query: 121 DLVFKMIGRL 130
            L+ +M+ ++
Sbjct: 301 ALLEQMLTQV 310

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21357133|ref|NP_650689.1| CG7985, isoform A [Drosophila melanogaster] gi|442619765|ref|NP_001262699.1| CG7985, isoform B [Drosophila melanogaster] gi|5901810|gb|AAD55413.1|AF181627_1 BcDNA.GH04120 [Drosophila melanogaster] gi|10726597|gb|AAF55509.2| CG7985, isoform A [Drosophila melanogaster] gi|220943658|gb|ACL84372.1| CG7985-PA [synthetic construct] gi|440217588|gb|AGB96079.1| CG7985, isoform B [Drosophila melanogaster]

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/130 (40%), Positives = 80/130 (61%), Gaps = 3/130 (2%)

Query: 4   PSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS---LGFDNTNP 60
           P    E LVHLDLKGAPP L++LK++LP+L   GAT LLIE+ED  PYS         N 
Sbjct: 185 PRAPAERLVHLDLKGAPPKLSFLKQLLPVLRALGATGLLIEYEDMFPYSGVLQPLAAHNA 244

Query: 61  FRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSL 120
           ++E E+   L  A  +GL+ +PLV  +  M++VLK+  F ++R+     + ICP+   S+
Sbjct: 245 YKEDELRDFLECAALHGLSVMPLVQTFGHMEYVLKLSGFEQLRELAESPQSICPSQPQSM 304

Query: 121 DLVFKMIGRL 130
            L+ +M+ ++
Sbjct: 305 ALLEQMLTQV 314

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347971594|ref|XP_313191.5| AGAP004270-PA [Anopheles gambiae str. PEST] gi|333468737|gb|EAA08649.6| AGAP004270-PA [Anopheles gambiae str. PEST]

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/123 (38%), Positives = 77/123 (62%), Gaps = 3/123 (2%)

Query: 11  LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS---LGFDNTNPFRETEIF 67
           LVH DLKGAPP ++YL+ ++PIL   GAT +L+E+ED  PY    L     N +   EI 
Sbjct: 197 LVHFDLKGAPPKVSYLRRLMPILKTLGATGILLEYEDMFPYGGSLLPLAARNAYNRDEIL 256

Query: 68  IILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMI 127
            +L +A + GL  IPLV  +  +++ LK+KEFA +R+  +  + +CP+  +S+  V +++
Sbjct: 257 ELLKSAFALGLTVIPLVQTFGHLEYALKLKEFAHLRETEDSPQALCPSYNASMAFVEELL 316

Query: 128 GRL 130
            ++
Sbjct: 317 TQV 319

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194900276|ref|XP_001979683.1| GG22715 [Drosophila erecta] gi|190651386|gb|EDV48641.1| GG22715 [Drosophila erecta]

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/130 (40%), Positives = 80/130 (61%), Gaps = 3/130 (2%)

Query: 4   PSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS---LGFDNTNP 60
           P    E LVHLDLKGAPP L++LK++LP+L   GAT LLIE+ED  PYS         N 
Sbjct: 183 PRAPAERLVHLDLKGAPPKLSFLKQLLPVLRALGATGLLIEYEDMFPYSGVLQPLAAHNA 242

Query: 61  FRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSL 120
           ++E E+   L  A  +GL+ +PLV  +  M++VLK+  F ++R+     + ICP+   S+
Sbjct: 243 YKEDELRDFLECAALHGLSVMPLVQTFGHMEYVLKLSGFEQLRELAESPQSICPSQPQSM 302

Query: 121 DLVFKMIGRL 130
            L+ +++ ++
Sbjct: 303 ALLEQVLTQV 312

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195497552|ref|XP_002096149.1| GE25519 [Drosophila yakuba] gi|194182250|gb|EDW95861.1| GE25519 [Drosophila yakuba]

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/130 (40%), Positives = 79/130 (60%), Gaps = 3/130 (2%)

Query: 4   PSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS---LGFDNTNP 60
           P    E LVHLDLKGAPP L++LK++LP+L   GAT LLIE+ED  PYS         N 
Sbjct: 307 PRAPTERLVHLDLKGAPPKLSFLKQLLPVLRALGATGLLIEYEDMFPYSGVLQPLAAHNA 366

Query: 61  FRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSL 120
           ++E E+   L  A  +GL+ +PLV  +  M++VLK+  F ++R+     + ICP+   S 
Sbjct: 367 YKEDELRDFLECAALHGLSVMPLVQTFGHMEYVLKLSGFEQLRELAESPQSICPSQPQST 426

Query: 121 DLVFKMIGRL 130
            L+ +M+ ++
Sbjct: 427 ALLEQMLTQV 436

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427785613|gb|JAA58258.1| Putative hexosaminidase d-like protein [Rhipicephalus pulchellus]

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/130 (38%), Positives = 77/130 (59%), Gaps = 3/130 (2%)

Query: 4   PSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS---LGFDNTNP 60
           P  F E +VH DLKGAPP L Y   + P+L   GAT LL+E+ED  PY+        +N 
Sbjct: 68  PIQFDERIVHFDLKGAPPKLEYYDAVFPLLRKLGATGLLMEYEDMFPYTGMLSPLAASNA 127

Query: 61  FRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSL 120
           + E +I  IL+ A +N L  IPLV  +  ++F LK++EF+ +R+  +  + +CP+   S+
Sbjct: 128 YSEADIAHILSVARANHLQVIPLVQTFGHLEFALKLQEFSDLRELSHSPQALCPSLNGSV 187

Query: 121 DLVFKMIGRL 130
            LV  M+ ++
Sbjct: 188 SLVKAMLDQV 197

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195107341|ref|XP_001998272.1| GI23723 [Drosophila mojavensis] gi|193914866|gb|EDW13733.1| GI23723 [Drosophila mojavensis]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/131 (40%), Positives = 79/131 (60%), Gaps = 4/131 (3%)

Query: 4   PSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFD---NTNP 60
           P    E LVHLDLKGAPP L++LK++LP+L   GAT LLIE+ED  PYS         N 
Sbjct: 179 PRAPAERLVHLDLKGAPPKLSFLKQLLPVLRALGATGLLIEYEDMFPYSGNLQPLAARNA 238

Query: 61  FRETEIFIILAAA-ESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSS 119
           ++E E+   L +A    GL+ +PLV  +  M++ LK+ EF ++R+     + ICP+   S
Sbjct: 239 YKEAELKDFLESAWVEYGLSIMPLVQTFGHMEYALKLAEFEQLRELPESPQSICPSQPQS 298

Query: 120 LDLVFKMIGRL 130
           + L+  M+ ++
Sbjct: 299 MALLEHMLTQV 309

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
FB|FBgn0028499	708	CG7985 [Drosophila melanogaste	0.946	0.175	0.417	1.5e-19
WB|WBGene00013497	512	hex-5 [Caenorhabditis elegans	0.946	0.242	0.338	1.8e-17
WB|WBGene00015767	596	hex-2 [Caenorhabditis elegans	0.916	0.201	0.36	3.2e-17
MGI|MGI:3605542	486	Hexdc "hexosaminidase (glycosy	0.992	0.267	0.406	7.1e-17
RGD|2302323	486	Hexdc "hexosaminidase (glycosy	0.984	0.265	0.413	7.1e-17
WB|WBGene00021766	491	hex-4 [Caenorhabditis elegans	0.954	0.254	0.381	9.3e-17
UNIPROTKB|F1S009	481	HEXDC "Uncharacterized protein	0.992	0.270	0.406	1.1e-16
UNIPROTKB|F1MED7	479	HEXDC "Hexosaminidase D" [Bos	0.961	0.263	0.418	4e-16
UNIPROTKB|A6QNR0	346	HEXDC "Hexosaminidase D" [Bos	0.916	0.346	0.414	1.4e-15
UNIPROTKB|Q8WVB3	486	HEXDC "Hexosaminidase D" [Homo	0.961	0.259	0.427	1.4e-15

FB|FBgn0028499 CG7985 [Drosophila melanogaster (taxid:7227)]

 Score = 243 (90.6 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 53/127 (41%), Positives = 78/127 (61%)

Query:     4 PSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNT---NP 60
             P    E LVHLDLKGAPP L++LK++LP+L   GAT LLIE+ED  PYS         N 
Sbjct:   185 PRAPAERLVHLDLKGAPPKLSFLKQLLPVLRALGATGLLIEYEDMFPYSGVLQPLAAHNA 244

Query:    61 FRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSL 120
             ++E E+   L  A  +GL+ +PLV  +  M++VLK+  F ++R+     + ICP+   S+
Sbjct:   245 YKEDELRDFLECAALHGLSVMPLVQTFGHMEYVLKLSGFEQLRELAESPQSICPSQPQSM 304

Query:   121 DLVFKMI 127
              L+ +M+
Sbjct:   305 ALLEQML 311

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

WB|WBGene00013497 hex-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 221 (82.9 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 43/127 (33%), Positives = 72/127 (56%)

Query:     7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFD---NTNPFRE 63
             ++  +VH D+KGAPP + Y K++L  ++  GAT +L+EWED  PY  G     N N + E
Sbjct:    32 YQRSIVHFDMKGAPPKVAYFKQLLTTISGLGATGVLLEWEDMFPYQGGLSRVVNKNAYTE 91

Query:    64 TEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLV 123
              E+  +L  A+   L  IPLV   + M+++LK +E++ +R++       C     SLD++
Sbjct:    92 EEVISVLEHAQQLQLEVIPLVQTLAHMEWILKTEEYSVLREDERYPMVACIGNPESLDII 151

Query:   124 FKMIGRL 130
                + +L
Sbjct:   152 LDSVNQL 158

GO:0005975 "carbohydrate metabolic process" evidence=IEA;IDA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0015929 "hexosaminidase activity" evidence=IDA

WB|WBGene00015767 hex-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 220 (82.5 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 45/125 (36%), Positives = 76/125 (60%)

Query:     7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG----FDNTNPFR 62
             +K V++H DLKGAPP + Y  ++L ++A  GAT +L+EWED  P++ G    F NT+ + 
Sbjct:   111 YKNVVIHFDLKGAPPKVDYFLDLLRLIAKGGATGILLEWEDMFPWT-GKLEQFKNTDAYS 169

Query:    63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDL 122
             E+++ +IL+ A    L  IPLV  +  ++++LK +E  K R+N    + +C      ++ 
Sbjct:   170 ESDVDMILSEATKLKLDVIPLVQTFGHLEWILKYEEMRKYRENDAYPQVLCLGNEEGVEF 229

Query:   123 VFKMI 127
             V +MI
Sbjct:   230 VREMI 234

GO:0005975 "carbohydrate metabolic process" evidence=IEA;IDA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015929 "hexosaminidase activity" evidence=IDA

MGI|MGI:3605542 Hexdc "hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing" [Mus musculus (taxid:10090)]

 Score = 215 (80.7 bits), Expect = 7.1e-17, P = 7.1e-17
 Identities = 54/133 (40%), Positives = 74/133 (55%)

Query:     1 MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS--LGFDNT 58
             M +P+ FK  LVHLDLKGAPP ++YL E+ P+    GA  LLIE+ED  PY   L     
Sbjct:     1 MSSPTPFKMRLVHLDLKGAPPKVSYLSEVFPLFHALGANGLLIEYEDMFPYEGHLRLLRA 60

Query:    59 -NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNAR 117
              + +  +E+  IL  A  + L  IPLV  +  M+FVLK   FA +R+       + P+  
Sbjct:    61 KHAYSPSEVTEILRLARLSELEVIPLVQTFGHMEFVLKHAAFAHLREVALFPNTLNPHEA 120

Query:   118 SSLDLVFKMIGRL 130
              SL LV  MI ++
Sbjct:   121 ESLALVQAMIDQI 133

GO:0003824 "catalytic activity" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0004563 "beta-N-acetylhexosaminidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

RGD|2302323 Hexdc "hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing" [Rattus norvegicus (taxid:10116)]

 Score = 215 (80.7 bits), Expect = 7.1e-17, P = 7.1e-17
 Identities = 55/133 (41%), Positives = 75/133 (56%)

Query:     2 VTPST-FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS--LGFDNT 58
             +T ST FK  LVHLDLKGAPP ++YL E+ P+    GA  LLIE+ED  PY   L     
Sbjct:     1 MTCSTPFKMRLVHLDLKGAPPKVSYLSEVFPLFHALGANGLLIEYEDMFPYEGHLRLLRA 60

Query:    59 -NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNAR 117
              + +  +E+  IL  A  +GL  +PLV  +  M+FVLK   FA +R+       + P+  
Sbjct:    61 KHAYSPSEVTEILRLARLSGLEVVPLVQTFGHMEFVLKHAAFAHLREVAPFPNTLNPHEA 120

Query:   118 SSLDLVFKMIGRL 130
              SL LV  MI ++
Sbjct:   121 ESLALVQAMIDQI 133

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

WB|WBGene00021766 hex-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 214 (80.4 bits), Expect = 9.3e-17, P = 9.3e-17
 Identities = 50/131 (38%), Positives = 74/131 (56%)

Query:     7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNP---FRE 63
             FK ++VHLDLKGAPP + YL E   +L+      +LIE+ED  PYS   +       + E
Sbjct:    49 FKNIIVHLDLKGAPPRVEYLIEFFKLLSKHHVDGILIEYEDMFPYSGDIEEIRRDLHYSE 108

Query:    64 TEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLV 123
              +I  I+ AAE + L  IPL+  +  ++FVLK  +F  + ++  D   IC +   S+D+V
Sbjct:   109 NDIRRIIQAAEVHNLEVIPLIQSFGHLEFVLKKSKFMGLSEDLIDLNTICISDSKSIDIV 168

Query:   124 FKMIG---RLH 131
              +MI    RLH
Sbjct:   169 KQMIEQIRRLH 179

GO:0005975 "carbohydrate metabolic process" evidence=IEA;IDA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015929 "hexosaminidase activity" evidence=IDA

UNIPROTKB|F1S009 HEXDC "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 213 (80.0 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 54/133 (40%), Positives = 72/133 (54%)

Query:     1 MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS--LGFDNT 58
             M   S FK  LVHLDLKGAPP + YL E+ P+    GA  LL+E+ED  PY   LG    
Sbjct:     1 MAGSSPFKMRLVHLDLKGAPPRVCYLSEVFPLFRALGANGLLVEYEDMFPYGGRLGLLRA 60

Query:    59 -NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNAR 117
              + +  +EI  IL  A  N L  IPLV  +  M+FVLK +  A +R+       + P+  
Sbjct:    61 KHAYSPSEIKEILRLATLNELEVIPLVQTFGHMEFVLKHEALAHLREVALFPNTLNPHEA 120

Query:   118 SSLDLVFKMIGRL 130
              SL LV  M+ ++
Sbjct:   121 ESLALVAAMVDQV 133

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

UNIPROTKB|F1MED7 HEXDC "Hexosaminidase D" [Bos taurus (taxid:9913)]

 Score = 208 (78.3 bits), Expect = 4.0e-16, P = 4.0e-16
 Identities = 54/129 (41%), Positives = 70/129 (54%)

Query:     5 STFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS--LGFDNT-NPF 61
             S FK  LVHLDLKGAPP + YL EI P+    GA  +LIE+ED  PY   L      + +
Sbjct:     5 SPFKMRLVHLDLKGAPPKVCYLSEIFPLFRALGANGILIEYEDMFPYEGHLRLLRAKHAY 64

Query:    62 RETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLD 121
               +EI  IL  A  N L  IPLV  +  M+FVLK +  A +R+       + P+   SL 
Sbjct:    65 SPSEIKEILHLATLNELEVIPLVQTFGHMEFVLKHEALAHLREVARFPNTLNPHKEESLA 124

Query:   122 LVFKMIGRL 130
             LV  MI ++
Sbjct:   125 LVTAMIDQV 133

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

UNIPROTKB|A6QNR0 HEXDC "Hexosaminidase D" [Bos taurus (taxid:9913)]

 Score = 199 (75.1 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 51/123 (41%), Positives = 67/123 (54%)

Query:    11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS--LGFDNT-NPFRETEIF 67
             LVHLDLKGAPP + YL EI P+    GA  +LIE+ED  PY   L      + +  +EI 
Sbjct:     3 LVHLDLKGAPPKVCYLSEIFPLFRALGANGILIEYEDMFPYEGHLRLLRAKHAYSPSEIK 62

Query:    68 IILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMI 127
              IL  A  N L  IPLV  +  M+FVLK +  A +R+       + P+   SL LV  MI
Sbjct:    63 EILHLATLNELEVIPLVQTFGHMEFVLKHEALAHLREVARFPNTLNPHKEESLALVTAMI 122

Query:   128 GRL 130
              ++
Sbjct:   123 DQV 125

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004563 "beta-N-acetylhexosaminidase activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

UNIPROTKB|Q8WVB3 HEXDC "Hexosaminidase D" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 56/131 (42%), Positives = 72/131 (54%)

Query:     3 TPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS--LGFDNTN- 59
             TP  F+  LVHLDLKGAPP ++YL EI P+    GA  LLIE+ED  PY   L       
Sbjct:     5 TP--FQMRLVHLDLKGAPPKVSYLSEIFPLFRALGANGLLIEYEDMFPYEGPLRLLRAKY 62

Query:    60 PFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSS 119
              +  +EI  IL  A  N L  IPLV  +  M+FVLK   FA +R+  +    + P+   S
Sbjct:    63 AYSPSEIKEILHLAGLNELEVIPLVQTFGHMEFVLKHTAFAHLREVGSFPCTLNPHEAES 122

Query:   120 LDLVFKMIGRL 130
             L LV  MI ++
Sbjct:   123 LALVGAMIDQV 133

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004563 "beta-N-acetylhexosaminidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	131
cd06565	301	cd06565, GH20_GcnA-like, Glycosyl hydrolase family	1e-26

>gnl|CDD|119335 cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins

 Score =   99 bits (250), Expect = 1e-26
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 11  LVHLDLKG-APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG---FDNTNPFRETEI 66
            VHLDLK  A P ++YLK++L +LA  GA  LL+ +EDT PY            + + EI
Sbjct: 3   GVHLDLKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEI 62

Query: 67  FIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKM 126
             I   A   G+  IPL+     ++F+LK  EF  +R+  +  + +CP    + D + +M
Sbjct: 63  REIDDYAAELGIEVIPLIQTLGHLEFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEM 122

Query: 127 I 127
           I
Sbjct: 123 I 123

GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Length = 301

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
cd06565	301	GH20_GcnA-like Glycosyl hydrolase family 20 (GH20)	100.0
cd06569	445	GH20_Sm-chitobiase-like The chitobiase of Serratia	100.0
cd06568	329	GH20_SpHex_like A subgroup of the Glycosyl hydrola	100.0
cd06570	311	GH20_chitobiase-like_1 A functionally uncharacteri	100.0
cd06563	357	GH20_chitobiase-like The chitobiase of Serratia ma	100.0
cd06564	326	GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (	100.0
cd06562	348	GH20_HexA_HexB-like Beta-N-acetylhexosaminidases c	100.0
PF00728	351	Glyco_hydro_20: Glycosyl hydrolase family 20, cata	100.0
cd02742	303	GH20_hexosaminidase Beta-N-acetylhexosaminidases o	100.0
KOG2499|consensus	542		99.95
COG3525	732	Chb N-acetyl-beta-hexosaminidase [Carbohydrate tra	99.93
PF02638	311	DUF187: Glycosyl hydrolase like GH101; InterPro: I	98.35
PF14871	132	GHL6: Hypothetical glycosyl hydrolase 6	97.79
COG1649	418	Uncharacterized protein conserved in bacteria [Fun	97.37
PF02449	374	Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0	97.01
PF13200	316	DUF4015: Putative glycosyl hydrolase domain	96.92
PF10566	273	Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro:	96.84
PF00128	316	Alpha-amylase: Alpha amylase, catalytic domain; In	96.26
PRK09441	479	cytoplasmic alpha-amylase; Reviewed	95.95
smart00642	166	Aamy Alpha-amylase domain.	95.83
PRK01060	281	endonuclease IV; Provisional	95.26
PF00150	281	Cellulase: Cellulase (glycosyl hydrolase family 5)	95.06
PRK05402	726	glycogen branching enzyme; Provisional	94.34
PRK12313	633	glycogen branching enzyme; Provisional	94.27
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	94.22
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	94.21
PLN00196	428	alpha-amylase; Provisional	94.17
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	94.16
TIGR02403	543	trehalose_treC alpha,alpha-phosphotrehalase. Treha	94.14
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	93.87
PRK14706	639	glycogen branching enzyme; Provisional	93.8
PLN02784	894	alpha-amylase	93.64
PLN02361	401	alpha-amylase	93.41
smart00518	273	AP2Ec AP endonuclease family 2. These endonuclease	93.31
KOG0470|consensus	757		93.14
PRK09505	683	malS alpha-amylase; Reviewed	92.89
PF13199	559	Glyco_hydro_66: Glycosyl hydrolase family 66; PDB:	92.77
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	92.59
PF07555	306	NAGidase: beta-N-acetylglucosaminidase ; InterPro:	92.27
PRK12568	730	glycogen branching enzyme; Provisional	92.15
PRK10785	598	maltodextrin glucosidase; Provisional	92.1
PLN02447	758	1,4-alpha-glucan-branching enzyme	92.02
PRK14511	879	maltooligosyl trehalose synthase; Provisional	91.99
PRK15452	443	putative protease; Provisional	91.99
PRK14705	1224	glycogen branching enzyme; Provisional	91.85
TIGR02401	825	trehalose_TreY malto-oligosyltrehalose synthase. T	91.62
TIGR02456	539	treS_nterm trehalose synthase. Trehalose synthase	91.27
PRK10933	551	trehalose-6-phosphate hydrolase; Provisional	91.23
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	91.2
PLN02591	250	tryptophan synthase	90.98
PF02065	394	Melibiase: Melibiase; InterPro: IPR000111 O-Glycos	90.94
PF02679	244	ComA: (2R)-phospho-3-sulfolactate synthase (ComA);	90.89
PF14488	166	DUF4434: Domain of unknown function (DUF4434)	90.87
COG1874	673	LacA Beta-galactosidase [Carbohydrate transport an	90.85
PLN02960	897	alpha-amylase	90.83
TIGR03849	237	arch_ComA phosphosulfolactate synthase. This model	90.72
PF02836	298	Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM	90.71
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	90.23
PRK14510	1221	putative bifunctional 4-alpha-glucanotransferase/g	89.95
TIGR00674	285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	89.57
PRK03170	292	dihydrodipicolinate synthase; Provisional	88.76
KOG3698|consensus	891		88.7
PRK03705	658	glycogen debranching enzyme; Provisional	88.51
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	88.51
PTZ00372	413	endonuclease 4-like protein; Provisional	88.46
cd01299	342	Met_dep_hydrolase_A Metallo-dependent hydrolases,	88.1
cd00950	284	DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke	88.05
PRK14582	671	pgaB outer membrane N-deacetylase; Provisional	87.36
PF01301	319	Glyco_hydro_35: Glycosyl hydrolases family 35; Int	87.31
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	87.2
PLN02417	280	dihydrodipicolinate synthase	86.96
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	86.84
cd00954	288	NAL N-Acetylneuraminic acid aldolase, also called	86.66
PF14542	78	Acetyltransf_CG: GCN5-related N-acetyl-transferase	86.39
TIGR00542	279	hxl6Piso_put hexulose-6-phosphate isomerase, putat	86.31
PF05913	357	DUF871: Bacterial protein of unknown function (DUF	86.17
PRK13210	284	putative L-xylulose 5-phosphate 3-epimerase; Revie	86.12
PRK10076	213	pyruvate formate lyase II activase; Provisional	86.01
PRK14507	1693	putative bifunctional 4-alpha-glucanotransferase/m	85.38
PRK15447	301	putative protease; Provisional	84.89
PRK04147	293	N-acetylneuraminate lyase; Provisional	84.85
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	84.57
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	84.33
TIGR02109	358	PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E.	84.3
TIGR03234	254	OH-pyruv-isom hydroxypyruvate isomerase. This enzy	84.19
COG1313	335	PflX Uncharacterized Fe-S protein PflX, homolog of	84.08
TIGR00587	274	nfo apurinic endonuclease (APN1). All proteins in	83.99
PRK05301	378	pyrroloquinoline quinone biosynthesis protein PqqE	83.91
PF01261	213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	83.45
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	83.44
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	83.33
TIGR00683	290	nanA N-acetylneuraminate lyase. N-acetylneuraminat	82.76
PRK09856	275	fructoselysine 3-epimerase; Provisional	82.74
cd00019	279	AP2Ec AP endonuclease family 2; These endonuclease	82.52
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	82.23
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	81.93
cd00951	289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	81.85
PF01055	441	Glyco_hydro_31: Glycosyl hydrolases family 31 ; In	81.73
PF03102	241	NeuB: NeuB family; InterPro: IPR013132 NeuB is the	81.33
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	81.26
PLN02877	970	alpha-amylase/limit dextrinase	81.1
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	81.1
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	81.03
TIGR01866	216	cas_Csn2 CRISPR-associated protein, Csn2 family. C	80.98
PF07905	123	PucR: Purine catabolism regulatory protein-like fa	80.62
COG0366	505	AmyA Glycosidases [Carbohydrate transport and meta	80.51
COG0826	347	Collagenase and related proteases [Posttranslation	80.28
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	80.14
KOG4175|consensus	268		80.03

>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins

Probab=100.00  E-value=5.4e-42  Score=275.60  Aligned_cols=123  Identities=34%  Similarity=0.537  Sum_probs=117.9

Q ss_pred             ceeEEeecCC-CCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348           9 EVLVHLDLKG-APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus         9 ~Rg~mlD~~~-~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      .||+|||++| +++++++||++||.||.+|+|++++|+||+|||+|+   .+++++||++|||+|++||++|||+|||||
T Consensus         1 ~RG~mlD~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPei   80 (301)
T cd06565           1 FRGVHLDLKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLI   80 (301)
T ss_pred             CceEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecC
Confidence            5999999998 999999999999999999999999999999999998   455889999999999999999999999999


Q ss_pred             CCcchHHHHhcccccccccccCCCCceecCCChhHHHHHHHHHhhhC
Q psy2348          85 PLYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRLH  131 (131)
Q Consensus        85 ~~~GH~~~~L~~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~ev~  131 (131)
                      |||||++++|++|+|.++++++.++++|||++|+|++|+++|++|+.
T Consensus        81 d~pGH~~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~  127 (301)
T cd06565          81 QTLGHLEFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVL  127 (301)
T ss_pred             CCHHHHHHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHH
Confidence            99999999999999999999888889999999999999999999973

GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.

>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin

Probab=100.00  E-value=1.2e-38  Score=267.97  Aligned_cols=129  Identities=17%  Similarity=0.189  Sum_probs=108.6

Q ss_pred             CCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCC----CC------------------------
Q psy2348           3 TPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS----LG------------------------   54 (131)
Q Consensus         3 D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~----~~------------------------   54 (131)
                      |+|+|++||+|||++|||+++++||++||.||.+|+|.+.+|+.|...|+    +.                        
T Consensus         1 D~Prf~~RGlmLDvaR~f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~   80 (445)
T cd06569           1 DAPRFEYRGMHLDVARNFHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQL   80 (445)
T ss_pred             CCCCCcccceeeeccCCCCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccccccccc
Confidence            89999999999999999999999999999999999999999998864321    10                        


Q ss_pred             -------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-----cccccccccc-----------------
Q psy2348          55 -------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-----VKEFAKMRQN-----------------  105 (131)
Q Consensus        55 -------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-----~p~~~~l~e~-----------------  105 (131)
                             .+.+++||++|||+||+||++|||+||||||+|||+.++++     ||++.+....                 
T Consensus        81 ~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~  160 (445)
T cd06569          81 GSGPDTNNSGSGYYSRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQY  160 (445)
T ss_pred             ccCcccCcccCCccCHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCccccccc
Confidence                   02357899999999999999999999999999999999997     4444332110                 


Q ss_pred             ----CCCCceecCCChhHHHHHHHHHhhhC
Q psy2348         106 ----FNDTRFICPNARSSLDLVFKMIGRLH  131 (131)
Q Consensus       106 ----~~~~~~lcp~~~~t~~f~~~ll~ev~  131 (131)
                          +...++|||++|+|++|+++||+||+
T Consensus       161 ~~~~~~~~~~L~p~~~~ty~fl~~vl~Ev~  190 (445)
T cd06569         161 LSVQFYTDNVINPCMPSTYRFVDKVIDEIA  190 (445)
T ss_pred             ccccccccccccCCchhHHHHHHHHHHHHH
Confidence                01246899999999999999999983

Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.

>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex)

Probab=100.00  E-value=1.3e-36  Score=247.30  Aligned_cols=125  Identities=13%  Similarity=0.118  Sum_probs=107.3

Q ss_pred             CCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC------C-----------CCCCCCCHHHHHHH
Q psy2348           7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG------F-----------DNTNPFRETEIFII   69 (131)
Q Consensus         7 f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~------~-----------~~~~~YT~eeikei   69 (131)
                      |++||+|||++|||+++++||++||.||.+|+|.+.+|++|...|+-+      +           +.+++||++|+|+|
T Consensus         1 f~~RG~mlD~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~el   80 (329)
T cd06568           1 FAYRGLMLDVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDI   80 (329)
T ss_pred             CCccceeeeccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHH
Confidence            799999999999999999999999999999999999999987533211      1           23579999999999


Q ss_pred             HHHHHHcCCeEeeccCCcchHHHHhc-cccccccccc-------CCCCceecCCChhHHHHHHHHHhhhC
Q psy2348          70 LAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKMRQN-------FNDTRFICPNARSSLDLVFKMIGRLH  131 (131)
Q Consensus        70 v~yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~e~-------~~~~~~lcp~~~~t~~f~~~ll~ev~  131 (131)
                      ++||++|||+||||||+|||+.++++ +|++.+-.+.       ....+.|||++|+|++|+++|++|+.
T Consensus        81 v~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~  150 (329)
T cd06568          81 VAYAAERHITVVPEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELA  150 (329)
T ss_pred             HHHHHHcCCEEEEecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999997 7777653221       12346899999999999999999973

SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.

>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin

Probab=100.00  E-value=1.5e-36  Score=245.39  Aligned_cols=125  Identities=12%  Similarity=0.111  Sum_probs=107.0

Q ss_pred             CCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCC----CC--C----CCCCCCCHHHHHHHHHHHHHc
Q psy2348           7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS----LG--F----DNTNPFRETEIFIILAAAESN   76 (131)
Q Consensus         7 f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~----~~--~----~~~~~YT~eeikeiv~yA~~~   76 (131)
                      |++||+|||++||++++++||++||.||.+|+|.+.+|+.|...|+    +.  +    .++++||++|+|+|++||++|
T Consensus         1 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~r   80 (311)
T cd06570           1 FPWRGLLIDVSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDR   80 (311)
T ss_pred             CCccCeEEecCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHc
Confidence            8999999999999999999999999999999999999998865432    22  2    235699999999999999999


Q ss_pred             CCeEeeccCCcchHHHHhc-ccccccccc-------cCCCCceecCCChhHHHHHHHHHhhhC
Q psy2348          77 GLASIPLVPLYSDMDFVLK-VKEFAKMRQ-------NFNDTRFICPNARSSLDLVFKMIGRLH  131 (131)
Q Consensus        77 ~IevIP~i~~~GH~~~~L~-~p~~~~l~e-------~~~~~~~lcp~~~~t~~f~~~ll~ev~  131 (131)
                      ||+||||||+|||+.++++ ||++.+-..       .+..+++|||++|+|++|+++|++|+.
T Consensus        81 gI~vIPEId~PGH~~a~~~~ypel~~~~~~~~~~~~~~~~~~~l~~~~p~t~~f~~~l~~E~~  143 (311)
T cd06570          81 GIRVVPEIDVPGHASAIAVAYPELASGPGPYVIERGWGVFEPLLDPTNEETYTFLDNLFGEMA  143 (311)
T ss_pred             CCEEEEeecCccchHHHHHhCHHhccCCCccccccccccCCCccCCCChhHHHHHHHHHHHHH
Confidence            9999999999999999997 776654321       122356899999999999999999973

Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.

>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin

Probab=100.00  E-value=1.3e-36  Score=249.00  Aligned_cols=125  Identities=14%  Similarity=0.160  Sum_probs=107.5

Q ss_pred             CCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCC--C----------CCC----------------CCC
Q psy2348           7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPY--S----------LGF----------------DNT   58 (131)
Q Consensus         7 f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~--~----------~~~----------------~~~   58 (131)
                      |++||+|||++||++++++||++||.||.+|+|.+.+|+.|...|  .          |..                +++
T Consensus         1 f~~RG~mLD~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~   80 (357)
T cd06563           1 FSWRGLMLDVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYG   80 (357)
T ss_pred             CCccceeeeccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccC
Confidence            899999999999999999999999999999999999999886322  1          111                125


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-cccccccccc-------CCCCceecCCChhHHHHHHHHHhhh
Q psy2348          59 NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKMRQN-------FNDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        59 ~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~e~-------~~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      |+||++|+|+|++||++|||+||||||||||+.++++ +|++.+..+.       ...+++|||++|+|++|+++|++|+
T Consensus        81 ~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~  160 (357)
T cd06563          81 GFYTQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEV  160 (357)
T ss_pred             ceECHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999998 7776654321       2346899999999999999999997


Q ss_pred             C
Q psy2348         131 H  131 (131)
Q Consensus       131 ~  131 (131)
                      .
T Consensus       161 ~  161 (357)
T cd06563         161 A  161 (357)
T ss_pred             H
Confidence            3

Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.

>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins

Probab=100.00  E-value=2.6e-36  Score=244.51  Aligned_cols=124  Identities=17%  Similarity=0.202  Sum_probs=108.7

Q ss_pred             CceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC-------------------------CCCCCCCC
Q psy2348           8 KEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG-------------------------FDNTNPFR   62 (131)
Q Consensus         8 ~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~-------------------------~~~~~~YT   62 (131)
                      .+||+|||++|+++++++||++||.||.+|+|.+.+|++|+++|...                         .+++++||
T Consensus         1 ~~RG~mLD~aR~~~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT   80 (326)
T cd06564           1 EVRGFMLDVGRKYYSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT   80 (326)
T ss_pred             CcceeEEEccCCCCCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc
Confidence            47999999999999999999999999999999999999999887644                         12467999


Q ss_pred             HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-ccccccccc-cCCCCceecCCChhHHHHHHHHHhhhC
Q psy2348          63 ETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKMRQ-NFNDTRFICPNARSSLDLVFKMIGRLH  131 (131)
Q Consensus        63 ~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~e-~~~~~~~lcp~~~~t~~f~~~ll~ev~  131 (131)
                      ++|+|+|++||++|||+||||||+|||+.++++ +|++.+... .....++|||++|+|++|+++|++|+.
T Consensus        81 ~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~  151 (326)
T cd06564          81 KEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYL  151 (326)
T ss_pred             HHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998 566544321 123568999999999999999999973

Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.

>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides

Probab=100.00  E-value=5.5e-36  Score=244.87  Aligned_cols=125  Identities=14%  Similarity=0.145  Sum_probs=105.9

Q ss_pred             CCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecc--CCCC--CC--------CCCCCCCCHHHHHHHHHHHH
Q psy2348           7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYS--LG--------FDNTNPFRETEIFIILAAAE   74 (131)
Q Consensus         7 f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~--~p~~--~~--------~~~~~~YT~eeikeiv~yA~   74 (131)
                      |++||+|||++||++++++||++||.||.+|+|.+.+|+.|.  ||+.  +.        .+.+++||++|+|+||+||+
T Consensus         1 f~~RG~mlDvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~   80 (348)
T cd06562           1 FPHRGLLLDTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYAR   80 (348)
T ss_pred             CCccceeeeccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHH
Confidence            799999999999999999999999999999999999999885  3432  22        23467999999999999999


Q ss_pred             HcCCeEeeccCCcchHHHHhc-ccccccccc-------cCCCCceecCCChhHHHHHHHHHhhhC
Q psy2348          75 SNGLASIPLVPLYSDMDFVLK-VKEFAKMRQ-------NFNDTRFICPNARSSLDLVFKMIGRLH  131 (131)
Q Consensus        75 ~~~IevIP~i~~~GH~~~~L~-~p~~~~l~e-------~~~~~~~lcp~~~~t~~f~~~ll~ev~  131 (131)
                      +|||+||||||+|||+.++++ +|+...-..       .....++|||++|+|++|+++|++|+.
T Consensus        81 ~rgI~vIPEID~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~  145 (348)
T cd06562          81 LRGIRVIPEIDTPGHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVS  145 (348)
T ss_pred             HcCCEEEEeccCchhhHHHHHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHH
Confidence            999999999999999999998 555432111       122456899999999999999999973

The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in

>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3

Probab=100.00  E-value=6.5e-36  Score=241.38  Aligned_cols=124  Identities=16%  Similarity=0.216  Sum_probs=99.2

Q ss_pred             CCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecc--CCCC--CC--------CCC---CCCCCHHHHHHHHH
Q psy2348           7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYS--LG--------FDN---TNPFRETEIFIILA   71 (131)
Q Consensus         7 f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~--~p~~--~~--------~~~---~~~YT~eeikeiv~   71 (131)
                      |++||+|||++|+++++++||++||.||.+|+|.+++|++|+  ||+.  ..        .+.   +|+||++|||+|++
T Consensus         1 f~~RG~~lD~aR~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~   80 (351)
T PF00728_consen    1 FPWRGLMLDVARHFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVA   80 (351)
T ss_dssp             SSEEEEEEETSSS-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHH
T ss_pred             CCccceeeccCCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHH
Confidence            899999999999999999999999999999999999999998  3322  11        112   23999999999999


Q ss_pred             HHHHcCCeEeeccCCcchHHHHhc-cccccccc-----------ccCCCCceecCCChhHHHHHHHHHhhh
Q psy2348          72 AAESNGLASIPLVPLYSDMDFVLK-VKEFAKMR-----------QNFNDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        72 yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~-----------e~~~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      ||++|||+||||||+|||++++++ +|++....           .......+|||++|+|++|+++|++||
T Consensus        81 yA~~~gI~VIPeid~PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~  151 (351)
T PF00728_consen   81 YAKERGIEVIPEIDTPGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEV  151 (351)
T ss_dssp             HHHHTT-EEEEEEEESSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHH
T ss_pred             HHHHcCCceeeeccCchHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999999998 67776530           111223589999999999999999997

2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....

>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides

Probab=100.00  E-value=3e-35  Score=236.35  Aligned_cols=123  Identities=13%  Similarity=0.123  Sum_probs=104.2

Q ss_pred             ceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecc--CCCCCC----C----------CCCCCCCHHHHHHHHHH
Q psy2348           9 EVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYSLG----F----------DNTNPFRETEIFIILAA   72 (131)
Q Consensus         9 ~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~--~p~~~~----~----------~~~~~YT~eeikeiv~y   72 (131)
                      +||+|||++|+|+++++||++||.||.+|+|.+++|++|.  |++...    +          +.+++||++|+|+|++|
T Consensus         1 ~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~y   80 (303)
T cd02742           1 IRGIMLDVSRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEY   80 (303)
T ss_pred             CcceeeeccccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHH
Confidence            7999999999999999999999999999999999999986  333221    1          34679999999999999


Q ss_pred             HHHcCCeEeeccCCcchHHHHhc-cccccccc----ccCCCCceecCCChhHHHHHHHHHhhhC
Q psy2348          73 AESNGLASIPLVPLYSDMDFVLK-VKEFAKMR----QNFNDTRFICPNARSSLDLVFKMIGRLH  131 (131)
Q Consensus        73 A~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~----e~~~~~~~lcp~~~~t~~f~~~ll~ev~  131 (131)
                      |++|||+||||||||||++++++ +|+..+-.    ......+.|||++|+|++|+++|++|+.
T Consensus        81 A~~rgI~viPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~  144 (303)
T cd02742          81 AAARGIEVIPEIDMPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIA  144 (303)
T ss_pred             HHHcCCEEEEeccchHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHH
Confidence            99999999999999999999998 55543211    1123457999999999999999999973

These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.

>KOG2499|consensus

Probab=99.95  E-value=1.6e-27  Score=199.79  Aligned_cols=130  Identities=11%  Similarity=0.124  Sum_probs=108.5

Q ss_pred             CCCCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--cCCCCCC----CC------CCCCCCHHHHHH
Q psy2348           1 MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWED--TLPYSLG----FD------NTNPFRETEIFI   68 (131)
Q Consensus         1 ~~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed--~~p~~~~----~~------~~~~YT~eeike   68 (131)
                      |.|.|+|++||++||-|||+.+++.||+.|+-||..|+|.+.-|+-|  +|||..-    +.      ....||.+|+++
T Consensus       175 I~D~PrF~hRGlLlDTSRhylpv~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~~kGaYs~~~vYT~eDv~e  254 (542)
T KOG2499|consen  175 IQDKPRFGHRGLLLDTSRHYLPVKVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFPELHRKGAYSPRHVYTREDVSE  254 (542)
T ss_pred             EeccCCCcccceEEecccceecHHHHHHHHHHHHhhhhceeEEEeecCCCCccccCCchhhhhcCCCCcceeecHHHHHH
Confidence            57999999999999999999999999999999999999998877754  5887644    21      234699999999


Q ss_pred             HHHHHHHcCCeEeeccCCcchHHHH------hcccccccccccCCCCceecCCChhHHHHHHHHHhhhC
Q psy2348          69 ILAAAESNGLASIPLVPLYSDMDFV------LKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRLH  131 (131)
Q Consensus        69 iv~yA~~~~IevIP~i~~~GH~~~~------L~~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~ev~  131 (131)
                      ||+||+.|||.|+||+|+|||+..|      +-+|.|++- ++...+..++|.++.+|+|+++++.||.
T Consensus       255 vV~yarlRGIRVlpEfD~PgHt~sWg~g~~~fl~p~~~~~-~~~~~~gplnP~~n~tydvls~i~~dv~  322 (542)
T KOG2499|consen  255 VVEYARLRGIRVLPEFDTPGHTGSWGPGYPDFLTPCWSSF-EVQPPFGPLNPTNNHTYDVLSEIFEDVS  322 (542)
T ss_pred             HHHHHHhccceeeecccCCcccccccCCCCcccCCccccc-ccCCCCcCCCCCchhHHHHHHHHHHHHH
Confidence            9999999999999999999999998      223444443 2223345699999999999999999873

>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.1e-25  Score=194.08  Aligned_cols=130  Identities=13%  Similarity=0.100  Sum_probs=105.9

Q ss_pred             CCCCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccC----CCCCC----------------------
Q psy2348           1 MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTL----PYSLG----------------------   54 (131)
Q Consensus         1 ~~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~----p~~~~----------------------   54 (131)
                      +.|+|||+|||+|+|++|+|.+.+.+|++|+.||.+|.|.+.++.-|.-    ++++.                      
T Consensus       255 I~DaPRf~~rGllvDvaRqf~s~~~vk~~Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq~g~  334 (732)
T COG3525         255 IVDAPRFAWRGLLVDVARQFHSTDDVKRLIDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQLGY  334 (732)
T ss_pred             cccCcccchhhhhHhhhhhcCCHHHHHHHHHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCccccc
Confidence            5799999999999999999999999999999999999998877764421    11110                      


Q ss_pred             --CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-ccccccc-cccC--------CCCceecCCChhHHHH
Q psy2348          55 --FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKM-RQNF--------NDTRFICPNARSSLDL  122 (131)
Q Consensus        55 --~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l-~e~~--------~~~~~lcp~~~~t~~f  122 (131)
                        -+.+|+|||+++|++++||+.|+|+|||+||+|||+.+++. +| +..+ ++.+        .....++|+-+-+++|
T Consensus       335 ~pe~~ggfytqd~~relv~yAsar~ItviPeiD~PgHa~aav~A~p-~~~l~~a~~ds~~sv~~~~n~~ln~tl~~t~~f  413 (732)
T COG3525         335 GPERMGGFYTQDDIRELVAYASARQITVIPEIDMPGHARAAVVAYP-DLNLGRADPDSYDSVQAYLNPVLNPTLDPTYQF  413 (732)
T ss_pred             CcccccCcccHHHHHHHHHHHhhcCceecCCcCCcchhhhhhhhCc-cccccccCCCcchhhhhcccccccccccHHHHH
Confidence              12358999999999999999999999999999999999986 66 2233 1111        1234889999999999


Q ss_pred             HHHHHhhhC
Q psy2348         123 VFKMIGRLH  131 (131)
Q Consensus       123 ~~~ll~ev~  131 (131)
                      ++++++||.
T Consensus       414 ldkv~dEv~  422 (732)
T COG3525         414 LDKVLDEVA  422 (732)
T ss_pred             HHHHHHHHH
Confidence            999999983

>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function

Probab=98.35  E-value=8.6e-06  Score=66.15  Aligned_cols=123  Identities=15%  Similarity=0.160  Sum_probs=83.4

Q ss_pred             CceeEEeecC--CCCCCHHHHHHHHHHHHHcCCCEEEEEee---cc------CCCCCCCC--CCCCCCHHHHHHHHHHHH
Q psy2348           8 KEVLVHLDLK--GAPPSLTYLKEILPILAYTGATSLLIEWE---DT------LPYSLGFD--NTNPFRETEIFIILAAAE   74 (131)
Q Consensus         8 ~~Rg~mlD~~--~~~~~~~~lk~~i~~la~~g~n~~~l~~e---d~------~p~~~~~~--~~~~YT~eeikeiv~yA~   74 (131)
                      +.||+=|+--  ...++.+.+.++++.|...|+|++.++..   |+      .|+.+.+.  .+..-..+=+..+++-|.
T Consensus         1 E~RgvWi~~~~~~~~~~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaH   80 (311)
T PF02638_consen    1 EFRGVWISTVANIDWPSKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAH   80 (311)
T ss_pred             CeEEEEEeecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHH
Confidence            3588888873  46778999999999999999999988763   22      23322211  111224678999999999


Q ss_pred             HcCCeEeeccC--CcchH-HHHh-ccccccccc------cc---CCCCceecCCChhHHHHHHHHHhhh
Q psy2348          75 SNGLASIPLVP--LYSDM-DFVL-KVKEFAKMR------QN---FNDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        75 ~~~IevIP~i~--~~GH~-~~~L-~~p~~~~l~------e~---~~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      +|||+|.+=+.  +.++. +.++ ++|+.....      ..   .....-|||++|++.+|+.+++.||
T Consensus        81 krGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Ei  149 (311)
T PF02638_consen   81 KRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEI  149 (311)
T ss_pred             HcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHH
Confidence            99999999872  22222 2233 355542111      00   1122469999999999999999997

>PF14871 GHL6: Hypothetical glycosyl hydrolase 6

Probab=97.79  E-value=0.00039  Score=50.17  Aligned_cols=102  Identities=12%  Similarity=0.081  Sum_probs=75.1

Q ss_pred             HHHHHHHHHcCCCEEEEEeec--cCC-CCCC--CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhccccccc
Q psy2348          27 KEILPILAYTGATSLLIEWED--TLP-YSLG--FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAK  101 (131)
Q Consensus        27 k~~i~~la~~g~n~~~l~~ed--~~p-~~~~--~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~p~~~~  101 (131)
                      +++++.|...++|++++.-..  -+. |+..  -+++ .++++=++|+++.|+++||.|+=-++.--+-....+||++..
T Consensus         3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp-~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~   81 (132)
T PF14871_consen    3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHP-GLKRDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFV   81 (132)
T ss_pred             HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCC-CCCcCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceee
Confidence            688999999999999985441  111 2333  2222 566677799999999999999999999988888889999987


Q ss_pred             ccccCC----------CCceecCCChhHHHHHHHHHhhh
Q psy2348         102 MRQNFN----------DTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus       102 l~e~~~----------~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      ....+.          ....+|+.. .-.+++.+.++||
T Consensus        82 ~~~~G~~~~~~~~~~~~~~~~c~ns-~Y~e~~~~~i~Ei  119 (132)
T PF14871_consen   82 RDADGRPMRGERFGYPGWYTCCLNS-PYREFLLEQIREI  119 (132)
T ss_pred             ECCCCCCcCCCCcCCCCceecCCCc-cHHHHHHHHHHHH
Confidence            644332          123567754 5558888888887

>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.37  E-value=0.0025  Score=54.01  Aligned_cols=124  Identities=15%  Similarity=0.108  Sum_probs=86.4

Q ss_pred             CCceeEEee-c-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeec---cC------CCCCCCC--CCCCCCHHHHHHHHHHH
Q psy2348           7 FKEVLVHLD-L-KGAPPSLTYLKEILPILAYTGATSLLIEWED---TL------PYSLGFD--NTNPFRETEIFIILAAA   73 (131)
Q Consensus         7 f~~Rg~mlD-~-~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed---~~------p~~~~~~--~~~~YT~eeikeiv~yA   73 (131)
                      =+-||+=|| . .+...+...+++.+|.|..+|+|++......   ++      |..+...  -++.=-.+=+..+++-|
T Consensus        45 ~eiRGvWltn~~~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~A  124 (418)
T COG1649          45 QEIRGVWLTNADSRVLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEA  124 (418)
T ss_pred             ccceeEEEecCCCcccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHH
Confidence            456999999 5 5889999999999999999999999876542   21      2221110  01122346689999999


Q ss_pred             HHcCCeEeeccCCcc----hHHHHhccccccccc--------ccCC-CCceecCCChhHHHHHHHHHhhh
Q psy2348          74 ESNGLASIPLVPLYS----DMDFVLKVKEFAKMR--------QNFN-DTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        74 ~~~~IevIP~i~~~G----H~~~~L~~p~~~~l~--------e~~~-~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      .+|||+|+|=++...    ++.....+|+.....        ..+. ..-.|+|++|++-+|+.+++-||
T Consensus       125 Hkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~ev  194 (418)
T COG1649         125 HKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEV  194 (418)
T ss_pred             HhcCCeeeechhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHH
Confidence            999999999888654    333333344433211        1110 24579999999999999999886

>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3

Probab=97.01  E-value=0.0032  Score=51.85  Aligned_cols=103  Identities=17%  Similarity=0.236  Sum_probs=69.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEE---EeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-cc
Q psy2348          22 SLTYLKEILPILAYTGATSLLI---EWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-VK   97 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l---~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-~p   97 (131)
                      +.+.+++-++.|++.|+|.++|   .|+..-|      ..|.|.-+.+.++++.|+++||.||-.+.+-..=.++.+ +|
T Consensus         8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP------~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~P   81 (374)
T PF02449_consen    8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEP------EEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYP   81 (374)
T ss_dssp             -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-S------BTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSG
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEEEechhhccC------CCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcc
Confidence            3478899999999999999986   3444333      346788888999999999999999987776666677664 66


Q ss_pred             ccccccccC-----CCCceecCCChhHHHHHHHHHhhh
Q psy2348          98 EFAKMRQNF-----NDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        98 ~~~~l~e~~-----~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      +-......+     ......|+.+|...+.+.++++.+
T Consensus        82 e~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l  119 (374)
T PF02449_consen   82 EILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRAL  119 (374)
T ss_dssp             CCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHH
T ss_pred             cccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHH
Confidence            643322111     233567999999888888887654

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.

>PF13200 DUF4015: Putative glycosyl hydrolase domain

Probab=96.92  E-value=0.0079  Score=49.32  Aligned_cols=109  Identities=13%  Similarity=0.220  Sum_probs=83.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeeccC---CCCCC---CCCCCCCC--HHHHHHHHHHHHHcCCeEeeccCCcchHHHH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIEWEDTL---PYSLG---FDNTNPFR--ETEIFIILAAAESNGLASIPLVPLYSDMDFV   93 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~---p~~~~---~~~~~~YT--~eeikeiv~yA~~~~IevIP~i~~~GH~~~~   93 (131)
                      +.+.+.++++++..-++|++++.+.|..   .|+..   ....|+-+  ..|++++++.++++||-+|--|-+|--...+
T Consensus        11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la   90 (316)
T PF13200_consen   11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLA   90 (316)
T ss_pred             CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHHh
Confidence            3477999999999999999999998764   34333   12223333  3699999999999999999999999977777


Q ss_pred             hcccccccccccC------CCCceecCCChhHHHHHHHHHhhh
Q psy2348          94 LKVKEFAKMRQNF------NDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        94 L~~p~~~~l~e~~------~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      .++|+++--..++      ....-+||.++++.+.+-++..|+
T Consensus        91 ~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Ea  133 (316)
T PF13200_consen   91 EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEA  133 (316)
T ss_pred             hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHH
Confidence            7788887522221      223468999999999998888775

>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3

Probab=96.84  E-value=0.0031  Score=50.70  Aligned_cols=108  Identities=15%  Similarity=0.180  Sum_probs=61.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc------
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG-FDNTNPFRETEIFIILAAAESNGLASIPLVPLYS------   88 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~-~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G------   88 (131)
                      .+-.+.+..|++||.-|++|+..+++.  |+.  +..+. ..-...+...+|+||++||+++||.|+==.+.-+      
T Consensus        26 ~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~--~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~  103 (273)
T PF10566_consen   26 KHGATTETQKRYIDFAAEMGIEYVLVDAGWYG--WEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVAN  103 (273)
T ss_dssp             -BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCG--S--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHH
T ss_pred             cCCCCHHHHHHHHHHHHHcCCCEEEecccccc--ccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHh
Confidence            456799999999999999999988872  221  00010 1111357779999999999999977654333333      


Q ss_pred             ---hHHHHhcccccccccccCCCCceecCCChhHHHHHHHHHhh
Q psy2348          89 ---DMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGR  129 (131)
Q Consensus        89 ---H~~~~L~~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~e  129 (131)
                         +++.+|+.  |++++-.+.--+-++-.+-+..++.++++++
T Consensus       104 ~~~~~~~~f~~--~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~  145 (273)
T PF10566_consen  104 LEKQLDEAFKL--YAKWGVKGVKIDFMDRDDQEMVNWYEDILED  145 (273)
T ss_dssp             HHCCHHHHHHH--HHHCTEEEEEEE--SSTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--HHHcCCCEEeeCcCCCCCHHHHHHHHHHHHH
Confidence               34445543  4444322222233455667788888888765

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.

>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3

Probab=96.26  E-value=0.014  Score=44.97  Aligned_cols=63  Identities=16%  Similarity=0.097  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          23 LTYLKEILPILAYTGATSLLIE--WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      ...|.+-||.|+.+|+|+++|-  ++....+.|+      ..+..+=|.+|+|++++-|.++||.||=-+-
T Consensus         3 ~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V   73 (316)
T PF00128_consen    3 FRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV   73 (316)
T ss_dssp             HHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence            4567888999999999998762  2322123343      1133345899999999999999999986553

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....

>PRK09441 cytoplasmic alpha-amylase; Reviewed

Probab=95.95  E-value=0.045  Score=46.74  Aligned_cols=80  Identities=19%  Similarity=0.105  Sum_probs=52.8

Q ss_pred             eEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEE--eecc--CCCCCC----C-----------CCCCCCCHHHHHHHHH
Q psy2348          11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIE--WEDT--LPYSLG----F-----------DNTNPFRETEIFIILA   71 (131)
Q Consensus        11 g~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~--~ed~--~p~~~~----~-----------~~~~~YT~eeikeiv~   71 (131)
                      +|++|+-...-.-..|.+-+|.|+.+|+|.++|-  ++..  -.+-|+    .           .+..+=|.+|.|++|+
T Consensus         9 ~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~   88 (479)
T PRK09441          9 YFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAID   88 (479)
T ss_pred             EEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHH
Confidence            5677765433445567788899999999998762  1211  001122    1           0122338999999999


Q ss_pred             HHHHcCCeEeeccCCcchHH
Q psy2348          72 AAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        72 yA~~~~IevIP~i~~~GH~~   91 (131)
                      -|.+|||.||=-+ .+-|+.
T Consensus        89 ~~H~~Gi~vi~D~-V~NH~~  107 (479)
T PRK09441         89 ALHENGIKVYADV-VLNHKA  107 (479)
T ss_pred             HHHHCCCEEEEEE-Cccccc
Confidence            9999999998665 456665

>smart00642 Aamy Alpha-amylase domain

Probab=95.83  E-value=0.069  Score=39.60  Aligned_cols=72  Identities=18%  Similarity=0.110  Sum_probs=48.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEE--eeccC---CCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIE--WEDTL---PYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYS   88 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~--~ed~~---p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G   88 (131)
                      .=+...+.+-++.|+.+|+|+++|-  ++...   .+.|+      ..+..+=|.+|++++++-|.++||.||-.+ ++-
T Consensus        15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~-V~N   93 (166)
T smart00642       15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDV-VIN   93 (166)
T ss_pred             CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEE-CCC
Confidence            3457778888899999999998762  12111   12222      111223378999999999999999999776 455


Q ss_pred             hHHH
Q psy2348          89 DMDF   92 (131)
Q Consensus        89 H~~~   92 (131)
                      |+..
T Consensus        94 H~~~   97 (166)
T smart00642       94 HTSD   97 (166)
T ss_pred             CCCC
Confidence            5543

>PRK01060 endonuclease IV; Provisional

Probab=95.26  E-value=0.14  Score=39.99  Aligned_cols=61  Identities=23%  Similarity=0.314  Sum_probs=48.5

Q ss_pred             ceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2348           9 EVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLAS   80 (131)
Q Consensus         9 ~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~Iev   80 (131)
                      .-|+|..+++.      +.+.++.++.+|+.++.|-......|.     +..+|.++++++-+.++++||++
T Consensus         3 ~~g~~~~~~~~------~~~~l~~~~~~G~d~vEl~~~~p~~~~-----~~~~~~~~~~~lk~~~~~~gl~~   63 (281)
T PRK01060          3 LIGAHVSAAGG------LEGAVAEAAEIGANAFMIFTGNPQQWK-----RKPLEELNIEAFKAACEKYGISP   63 (281)
T ss_pred             eEEEeeecCCC------HHHHHHHHHHcCCCEEEEECCCCCCCc-----CCCCCHHHHHHHHHHHHHcCCCC
Confidence            35778777655      788999999999999988665422222     35789999999999999999994

>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3

Probab=95.06  E-value=0.1  Score=40.04  Aligned_cols=72  Identities=13%  Similarity=-0.062  Sum_probs=48.3

Q ss_pred             CceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCC-CCC----CCCCHHHHHHHHHHHHHcCCeEee
Q psy2348           8 KEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGF-DNT----NPFRETEIFIILAAAESNGLASIP   82 (131)
Q Consensus         8 ~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~-~~~----~~YT~eeikeiv~yA~~~~IevIP   82 (131)
                      .+||+-..    ..+-....+.++.|+.+|+|.+++-+.    +.... +..    +.-..+.++++++.|+++||.||.
T Consensus         9 ~~~G~n~~----w~~~~~~~~~~~~~~~~G~n~VRi~v~----~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil   80 (281)
T PF00150_consen    9 NWRGFNTH----WYNPSITEADFDQLKALGFNTVRIPVG----WEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL   80 (281)
T ss_dssp             EEEEEEET----TSGGGSHHHHHHHHHHTTESEEEEEEE----STSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred             Eeeeeecc----cCCCCCHHHHHHHHHHCCCCEEEeCCC----HHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE
Confidence            34555544    222226789999999999999998765    11111 111    123457889999999999999998


Q ss_pred             ccCCc
Q psy2348          83 LVPLY   87 (131)
Q Consensus        83 ~i~~~   87 (131)
                      .+-..
T Consensus        81 d~h~~   85 (281)
T PF00150_consen   81 DLHNA   85 (281)
T ss_dssp             EEEES
T ss_pred             EeccC
Confidence            77764

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....

>PRK05402 glycogen branching enzyme; Provisional

Probab=94.34  E-value=0.18  Score=45.38  Aligned_cols=69  Identities=14%  Similarity=0.116  Sum_probs=46.3

Q ss_pred             CCHHHHH-HHHHHHHHcCCCEEEEE--eec----cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          21 PSLTYLK-EILPILAYTGATSLLIE--WED----TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        21 ~~~~~lk-~~i~~la~~g~n~~~l~--~ed----~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      -+...+. +++|.|+.+|+|++.|-  +|.    +..|...   ..++.+=|.+|.|++|+.|.++||.||=.+ .+.|+
T Consensus       262 g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~-V~NH~  340 (726)
T PRK05402        262 LSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW-VPAHF  340 (726)
T ss_pred             cCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE-CCCCC
Confidence            3455555 55799999999998762  121    1112111   224456689999999999999999998654 25666

>PRK12313 glycogen branching enzyme; Provisional

Probab=94.27  E-value=0.2  Score=44.35  Aligned_cols=106  Identities=14%  Similarity=0.068  Sum_probs=62.5

Q ss_pred             CCHHHHH-HHHHHHHHcCCCEEEEE--eec----cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          21 PSLTYLK-EILPILAYTGATSLLIE--WED----TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        21 ~~~~~lk-~~i~~la~~g~n~~~l~--~ed----~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      -+...+. ++||.|+.+|+|.+.|-  ++.    +..|...   .....+=|.+|.|++|+.|.++||.||=.+= +.|+
T Consensus       167 g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V-~nH~  245 (633)
T PRK12313        167 LSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWV-PGHF  245 (633)
T ss_pred             cCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCC
Confidence            3444444 66799999999998752  221    1122111   2233455799999999999999999997753 6676


Q ss_pred             HH---Hhcc----cccccc----ccc-CCCCceecCCChhHHHHHHHHH
Q psy2348          91 DF---VLKV----KEFAKM----RQN-FNDTRFICPNARSSLDLVFKMI  127 (131)
Q Consensus        91 ~~---~L~~----p~~~~l----~e~-~~~~~~lcp~~~~t~~f~~~ll  127 (131)
                      ..   .+.+    +.|...    ... ......++-.+|++.+++.+.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~  294 (633)
T PRK12313        246 PKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSA  294 (633)
T ss_pred             CCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHH
Confidence            42   1211    111100    000 0011256777899888887765

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=94.22  E-value=0.21  Score=44.20  Aligned_cols=105  Identities=11%  Similarity=0.063  Sum_probs=61.2

Q ss_pred             HHHHH-HHHHHHHHcCCCEEEEE--eec----cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHH
Q psy2348          23 LTYLK-EILPILAYTGATSLLIE--WED----TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDF   92 (131)
Q Consensus        23 ~~~lk-~~i~~la~~g~n~~~l~--~ed----~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~   92 (131)
                      ...+. +++|.|+.+|+|+++|-  +|.    +..|..-   ..++.+=|.+|.|++|+.|.++||.||=.+ .+.|+..
T Consensus       155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~-V~NH~~~  233 (613)
T TIGR01515       155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW-VPGHFPK  233 (613)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe-cccCcCC
Confidence            34433 55699999999998761  121    1112111   223334578999999999999999999765 3567642


Q ss_pred             ---Hhc----ccccccc--c--cc-CCCCceecCCChhHHHHHHHHHh
Q psy2348          93 ---VLK----VKEFAKM--R--QN-FNDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        93 ---~L~----~p~~~~l--~--e~-~~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                         .+.    .+.|...  .  .. ......++..+|++.+++.+.+.
T Consensus       234 ~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~  281 (613)
T TIGR01515       234 DDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANAL  281 (613)
T ss_pred             ccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHH
Confidence               221    1112110  0  00 00112467788888888877653

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=94.21  E-value=0.2  Score=44.68  Aligned_cols=70  Identities=16%  Similarity=0.110  Sum_probs=49.8

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCC---------CCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFD---------NTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDF   92 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~---------~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~   92 (131)
                      +.+...++++.|+++|+|.|.|-==-.||+.+.|.         ...+=|.||.|.+|+.|-++||-||=-+ .|||..-
T Consensus       163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~-V~~HF~~  241 (628)
T COG0296         163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDW-VPNHFPP  241 (628)
T ss_pred             HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEe-cCCcCCC
Confidence            45667799999999999997652212356554432         2234589999999999999999998443 4566543

>PLN00196 alpha-amylase; Provisional

Probab=94.17  E-value=0.35  Score=41.17  Aligned_cols=68  Identities=13%  Similarity=0.130  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC-------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG-------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~-------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~   91 (131)
                      .-..|.+-++.|+.+|++.++|-  ++. ..+.|+       +....+=|.+|.|++++-|.++||.||=-+ .+-|+.
T Consensus        42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s-~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv-V~NH~~  118 (428)
T PLN00196         42 WYNFLMGKVDDIAAAGITHVWLPPPSHS-VSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI-VINHRT  118 (428)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCC-CCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE-CccCcc
Confidence            35678889999999999998872  221 111222       211235589999999999999999998665 345554

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=94.16  E-value=0.29  Score=39.45  Aligned_cols=64  Identities=14%  Similarity=0.105  Sum_probs=44.4

Q ss_pred             eecCC-CCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348          14 LDLKG-APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI   81 (131)
Q Consensus        14 lD~~~-~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI   81 (131)
                      +.-.+ .-++++.|++.+.....+..+.-.+.+|.+--+-    +|..||.+|+++|.++|+++||-+.
T Consensus        98 l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~----GG~~~s~~el~ai~~~a~~~gl~lh  162 (290)
T PF01212_consen   98 LPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELA----GGTVYSLEELRAISELAREHGLPLH  162 (290)
T ss_dssp             EBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTT----TSB---HHHHHHHHHHHHHHT-EEE
T ss_pred             CCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCC----CCeeCCHHHHHHHHHHHHhCceEEE
Confidence            33345 7789999999988877755566667777654332    2568999999999999999998875

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase

Probab=94.14  E-value=0.26  Score=42.91  Aligned_cols=69  Identities=10%  Similarity=-0.009  Sum_probs=48.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCC----CC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYS----LG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD   89 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~----~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH   89 (131)
                      .=+...+.+-++.|+.+|+|++.|-  ..|+..    |+      -.+..+=|.+|++++++.|.++||.||-.+ .+-|
T Consensus        23 ~G~~~gi~~~l~yl~~lG~~~i~l~--Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~-v~NH   99 (543)
T TIGR02403        23 TGDLRGIIEKLDYLKKLGVDYIWLN--PFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM-VFNH   99 (543)
T ss_pred             ccCHHHHHHhHHHHHHcCCCEEEEC--CcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE-Cccc
Confidence            3467788888999999999998762  111111    11      112223489999999999999999999765 4555


Q ss_pred             HH
Q psy2348          90 MD   91 (131)
Q Consensus        90 ~~   91 (131)
                      +.
T Consensus       100 ~~  101 (543)
T TIGR02403       100 TS  101 (543)
T ss_pred             cc
Confidence            53

Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=93.87  E-value=0.28  Score=42.77  Aligned_cols=104  Identities=18%  Similarity=0.127  Sum_probs=61.6

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE----eecc--CCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE----WEDT--LPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDF   92 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~----~ed~--~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~   92 (131)
                      +...+.+-+|.|+.+|+|+++|-    +...  ..|...   ..++.+=|.+|.|++|+.|.++||.||=.+ .+.|+..
T Consensus       109 ~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~-V~NH~~~  187 (542)
T TIGR02402       109 TFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDV-VYNHFGP  187 (542)
T ss_pred             CHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEE-ccCCCCC
Confidence            55667777899999999998762    1111  111111   223345579999999999999999999665 4567642


Q ss_pred             H---h-c-ccccccccccCCCCceecCCCh---hHHHHHHHHH
Q psy2348          93 V---L-K-VKEFAKMRQNFNDTRFICPNAR---SSLDLVFKMI  127 (131)
Q Consensus        93 ~---L-~-~p~~~~l~e~~~~~~~lcp~~~---~t~~f~~~ll  127 (131)
                      -   + . .| |-.-.......+.++-.++   ++.+++-+.+
T Consensus       188 ~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~  229 (542)
T TIGR02402       188 EGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNA  229 (542)
T ss_pred             ccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHH
Confidence            1   1 1 12 2111111112235666666   7777766644

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>PRK14706 glycogen branching enzyme; Provisional

Probab=93.80  E-value=0.26  Score=44.02  Aligned_cols=107  Identities=10%  Similarity=0.021  Sum_probs=62.5

Q ss_pred             CCCHHHH-HHHHHHHHHcCCCEEEEEeeccCCCC---CC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2348          20 PPSLTYL-KEILPILAYTGATSLLIEWEDTLPYS---LG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD   89 (131)
Q Consensus        20 ~~~~~~l-k~~i~~la~~g~n~~~l~~ed~~p~~---~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH   89 (131)
                      +.+...+ .++++.|.++|+|.++|--=--+|+.   |+      .....+=|.+|.|++|+-|.++||.||-.+ .+.|
T Consensus       163 ~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~-v~nH  241 (639)
T PRK14706        163 FLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW-VPGH  241 (639)
T ss_pred             ccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe-cccc
Confidence            3343333 46679999999999875311112332   22      122334489999999999999999999775 3466


Q ss_pred             HH---HHhcc----ccc--cccc--ccCC-CCceecCCChhHHHHHHHHH
Q psy2348          90 MD---FVLKV----KEF--AKMR--QNFN-DTRFICPNARSSLDLVFKMI  127 (131)
Q Consensus        90 ~~---~~L~~----p~~--~~l~--e~~~-~~~~lcp~~~~t~~f~~~ll  127 (131)
                      +.   ..|.+    |-|  ..-.  .... ....++-++|++.+|+-+.+
T Consensus       242 ~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~  291 (639)
T PRK14706        242 FPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSA  291 (639)
T ss_pred             cCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHH
Confidence            42   22321    212  1100  0000 11246778899999887654

>PLN02784 alpha-amylase

Probab=93.64  E-value=0.47  Score=43.89  Aligned_cols=81  Identities=11%  Similarity=-0.068  Sum_probs=56.0

Q ss_pred             eeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC----C--CCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348          10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG----F--DNTNPFRETEIFIILAAAESNGLASI   81 (131)
Q Consensus        10 Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~----~--~~~~~YT~eeikeiv~yA~~~~IevI   81 (131)
                      .||++|.-+.----..|++-++.|+.+|+|.++|-  ++.. ...|+    +  -+..+=|.+|+|++++.|.++||.||
T Consensus       507 QgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~-s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVI  585 (894)
T PLN02784        507 QGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESV-SPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVL  585 (894)
T ss_pred             EeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCC-CCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence            57788873221225678899999999999998872  1111 11233    1  12334589999999999999999999


Q ss_pred             eccCCcchHHH
Q psy2348          82 PLVPLYSDMDF   92 (131)
Q Consensus        82 P~i~~~GH~~~   92 (131)
                      -.+ .+-|+..
T Consensus       586 lDi-ViNH~ag  595 (894)
T PLN02784        586 GDA-VLNHRCA  595 (894)
T ss_pred             EEE-Ccccccc
Confidence            876 5667653

>PLN02361 alpha-amylase

Probab=93.41  E-value=0.4  Score=40.56  Aligned_cols=77  Identities=14%  Similarity=0.016  Sum_probs=51.1

Q ss_pred             eEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348          11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIP   82 (131)
Q Consensus        11 g~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP   82 (131)
                      ||..|...+ ---..|++-++.|+.+|+|.++|-  ++ ...+.|+      --+..+=|++|.|++++-|.++||.||-
T Consensus        17 ~F~W~~~~~-~~w~~i~~kl~~l~~lG~t~iwl~P~~~-~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~   94 (401)
T PLN02361         17 AFNWESHKH-DWWRNLEGKVPDLAKSGFTSAWLPPPSQ-SLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMA   94 (401)
T ss_pred             EEeccCCcc-HHHHHHHHHHHHHHHcCCCEEEeCCCCc-CCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence            566665321 133567788889999999998772  11 1112233      1123345899999999999999999998


Q ss_pred             ccCCcchH
Q psy2348          83 LVPLYSDM   90 (131)
Q Consensus        83 ~i~~~GH~   90 (131)
                      .+= +-|+
T Consensus        95 D~V-~NH~  101 (401)
T PLN02361         95 DIV-INHR  101 (401)
T ss_pred             EEc-cccc
Confidence            763 4565

>smart00518 AP2Ec AP endonuclease family 2

Probab=93.31  E-value=0.63  Score=36.15  Aligned_cols=60  Identities=15%  Similarity=0.097  Sum_probs=42.5

Q ss_pred             eEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348          11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI   81 (131)
Q Consensus        11 g~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI   81 (131)
                      |+|..+++.      +.+-++.++++|++++.|.......+.     +..+|.++++++-+.++++||+|.
T Consensus         3 g~~~~~~~~------~~~~~~~~~~~G~~~vel~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~gl~ls   62 (273)
T smart00518        3 GAHVSAAGG------LYKAFIEAVDIGARSFQLFLGNPRSWK-----GVRLSEETAEKFKEALKENNIDVS   62 (273)
T ss_pred             eEEEcccCc------HhHHHHHHHHcCCCEEEEECCCCCCCC-----CCCCCHHHHHHHHHHHHHcCCCEE
Confidence            677777652      556788888888888888665433222     236788888888888888888765

These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites

>KOG0470|consensus

Probab=93.14  E-value=0.14  Score=46.28  Aligned_cols=112  Identities=14%  Similarity=0.052  Sum_probs=68.1

Q ss_pred             ecCCCCCCHHH-------HHHHHHHHHHcCCCEEEEE--eec--cCCCCCC------CCCCCCCCHH------HHHHHHH
Q psy2348          15 DLKGAPPSLTY-------LKEILPILAYTGATSLLIE--WED--TLPYSLG------FDNTNPFRET------EIFIILA   71 (131)
Q Consensus        15 D~~~~~~~~~~-------lk~~i~~la~~g~n~~~l~--~ed--~~p~~~~------~~~~~~YT~e------eikeiv~   71 (131)
                      +.+++=+++..       -++.++.|.++|+|.++|.  +|.  .+...|+      .+...+=|.+      |.|++|+
T Consensus       239 gfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd  318 (757)
T KOG0470|consen  239 GFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVD  318 (757)
T ss_pred             cccCCCCccccccchhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHH
Confidence            44566666655       4566888999999998763  343  1212233      2222234555      9999999


Q ss_pred             HHHHcCCeEeeccCCcchHHHHhcc----------cccccccc----cCCCCceecCCChhHHHHHHHHH
Q psy2348          72 AAESNGLASIPLVPLYSDMDFVLKV----------KEFAKMRQ----NFNDTRFICPNARSSLDLVFKMI  127 (131)
Q Consensus        72 yA~~~~IevIP~i~~~GH~~~~L~~----------p~~~~l~e----~~~~~~~lcp~~~~t~~f~~~ll  127 (131)
                      -|-+.||+|+=.| ..-|+..--+.          ..|-+...    +....+.++-+++.+.+||-+=+
T Consensus       319 ~aHs~GI~VlLDV-V~sHaa~n~~d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nL  387 (757)
T KOG0470|consen  319 KAHSLGIEVLLDV-VHSHAAKNSKDGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNL  387 (757)
T ss_pred             HHhhCCcEEehhh-hhhhcccCcCCcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHH
Confidence            9999999998666 44555541111          11222111    11234678888999999987543

>PRK09505 malS alpha-amylase; Reviewed

Probab=92.89  E-value=0.56  Score=42.29  Aligned_cols=69  Identities=22%  Similarity=0.241  Sum_probs=48.4

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eec-----------c---CCCCCCC------CCCCCCCHHHHHHHHHHHHHcCCe
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WED-----------T---LPYSLGF------DNTNPFRETEIFIILAAAESNGLA   79 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed-----------~---~p~~~~~------~~~~~YT~eeikeiv~yA~~~~Ie   79 (131)
                      ++..|.+-+|.|+.+|+|+++|-  ++.           .   +.|-|++      .+..+=|.+|.|++|+-|.+|||.
T Consensus       228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~  307 (683)
T PRK09505        228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR  307 (683)
T ss_pred             CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence            47778888999999999998862  221           1   1233331      123345899999999999999999


Q ss_pred             EeeccCCcchHH
Q psy2348          80 SIPLVPLYSDMD   91 (131)
Q Consensus        80 vIP~i~~~GH~~   91 (131)
                      ||=.+ .+-|+.
T Consensus       308 VilD~-V~NH~~  318 (683)
T PRK09505        308 ILFDV-VMNHTG  318 (683)
T ss_pred             EEEEE-CcCCCc
Confidence            88655 245554

>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A

Probab=92.77  E-value=0.32  Score=42.91  Aligned_cols=93  Identities=11%  Similarity=0.091  Sum_probs=63.8

Q ss_pred             CCCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEE---eeccCCCCCC-------CC--CCCCCCHHHHHHH
Q psy2348           2 VTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIE---WEDTLPYSLG-------FD--NTNPFRETEIFII   69 (131)
Q Consensus         2 ~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~---~ed~~p~~~~-------~~--~~~~YT~eeikei   69 (131)
                      +|+-+|+.-|+.=|.... .+.+..++-|+.|+.+-+|++++|   |.+.-|+.+.       |.  .+...+.+-||+.
T Consensus        97 sdW~~fPRYGfls~f~~~-~~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~y  175 (559)
T PF13199_consen   97 SDWTRFPRYGFLSDFDKS-KSAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDY  175 (559)
T ss_dssp             SSTTSS--EEEE---GGG-GGHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHH
T ss_pred             CCcccCCcceEecCCCCc-CCchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHH
Confidence            588899999998886322 566888999999999999999985   6666676544       21  1236788999999


Q ss_pred             HHHHHHcCCeEeeccCCcchHHHHhc
Q psy2348          70 LAAAESNGLASIPLVPLYSDMDFVLK   95 (131)
Q Consensus        70 v~yA~~~~IevIP~i~~~GH~~~~L~   95 (131)
                      |+.|.++|+..++-.-+.|=.+....
T Consensus       176 I~~ah~~Gmkam~Ynmiyaa~~~~~~  201 (559)
T PF13199_consen  176 INAAHKYGMKAMAYNMIYAANNNYEE  201 (559)
T ss_dssp             HHHHHHTT-EEEEEEESSEEETT--S
T ss_pred             HHHHHHcCcceehhHhhhccccCccc
Confidence            99999999999999988887776544

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=92.59  E-value=0.27  Score=44.21  Aligned_cols=99  Identities=14%  Similarity=0.202  Sum_probs=59.7

Q ss_pred             HHHHHHHcCCCEEEEE----eecc--------CCCCCC-----CCCCCCC----CHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348          29 ILPILAYTGATSLLIE----WEDT--------LPYSLG-----FDNTNPF----RETEIFIILAAAESNGLASIPLVPLY   87 (131)
Q Consensus        29 ~i~~la~~g~n~~~l~----~ed~--------~p~~~~-----~~~~~~Y----T~eeikeiv~yA~~~~IevIP~i~~~   87 (131)
                      .||.|+++|+|+++|-    +.+.        .-|.|+     ..-.+.|    |.+|.|++|+.|.++||.||=.+ .+
T Consensus       189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv-V~  267 (688)
T TIGR02100       189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV-VY  267 (688)
T ss_pred             hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE-Cc
Confidence            5899999999998652    2110        012333     1112244    78999999999999999999665 35


Q ss_pred             chHHHH--------hc---ccccccccc--------cCCCCceecCCChhHHHHHHHHHh
Q psy2348          88 SDMDFV--------LK---VKEFAKMRQ--------NFNDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        88 GH~~~~--------L~---~p~~~~l~e--------~~~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      .|+..-        ++   .+.|-....        .....+.++..+|.+.++|.+.+.
T Consensus       268 NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~  327 (688)
T TIGR02100       268 NHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLR  327 (688)
T ss_pred             CCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHH
Confidence            666432        11   111111110        111234677889999999887654

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases

Probab=92.27  E-value=0.77  Score=37.53  Aligned_cols=65  Identities=20%  Similarity=0.292  Sum_probs=38.7

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC-CCCCCCCCHHH---HHHHHHHHHHcCCeEeeccC
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG-FDNTNPFRETE---IFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~-~~~~~~YT~ee---ikeiv~yA~~~~IevIP~i~   85 (131)
                      |.+-+.+.=+.+++.|+.+|+|+.+ |=-..=||-.. |+  ..|+++|   +|+|++.|++.||++|=.|.
T Consensus         9 G~PWs~e~R~~l~~f~~~~kmN~Yi-YAPKdDpyhr~~Wr--e~Yp~~el~~l~~L~~~a~~~~V~Fv~ais   77 (306)
T PF07555_consen    9 GRPWSHEDRLDLIRFLGRYKMNTYI-YAPKDDPYHRSKWR--EPYPEEELAELKELADAAKANGVDFVYAIS   77 (306)
T ss_dssp             SS---HHHHHHHHHHHHHTT--EEE-E--TT-TTTTTTTT--S---HHHHHHHHHHHHHHHHTT-EEEEEEB
T ss_pred             CCCCCHHHHHHHHHHHHHcCCceEE-ECCCCChHHHhhhc--ccCCHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence            5677888889999999999999754 22211233222 66  6787764   67889999999999886553

Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....

>PRK12568 glycogen branching enzyme; Provisional

Probab=92.15  E-value=0.67  Score=42.13  Aligned_cols=70  Identities=14%  Similarity=0.098  Sum_probs=48.2

Q ss_pred             CCCHHHHH-HHHHHHHHcCCCEEEEE--eeccCCCC---CC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348          20 PPSLTYLK-EILPILAYTGATSLLIE--WEDTLPYS---LG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLY   87 (131)
Q Consensus        20 ~~~~~~lk-~~i~~la~~g~n~~~l~--~ed~~p~~---~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~   87 (131)
                      +.+-..+. ++|+.|+.+|+|.+.|-  +|  +|+.   |+      .....+=|.+|.|++|+.|.++||.||-.+- +
T Consensus       265 ~~~~~~la~~ll~ylk~LGvt~I~LmPi~e--~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V-~  341 (730)
T PRK12568        265 PLDWPTLAEQLIPYVQQLGFTHIELLPITE--HPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWV-S  341 (730)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCEEEECcccc--CCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEec-c
Confidence            33444454 56899999999998652  22  2322   22      1123345799999999999999999998774 6


Q ss_pred             chHHH
Q psy2348          88 SDMDF   92 (131)
Q Consensus        88 GH~~~   92 (131)
                      .|+..
T Consensus       342 nH~~~  346 (730)
T PRK12568        342 AHFPD  346 (730)
T ss_pred             ccCCc
Confidence            77653

>PRK10785 maltodextrin glucosidase; Provisional

Probab=92.10  E-value=0.73  Score=40.68  Aligned_cols=69  Identities=16%  Similarity=0.248  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eec--cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WED--TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed--~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~   91 (131)
                      ++..|.+-+|.|+.+|+|++.|-  ++.  ...|.-.   --++.+=|.+|.|++++-|.+|||.||=-+ ++.|+.
T Consensus       177 Dl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~-V~NH~~  252 (598)
T PRK10785        177 DLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG-VFNHTG  252 (598)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE-CCCcCC
Confidence            56788889999999999998762  111  1111110   112334488999999999999999998654 334443

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=92.02  E-value=0.66  Score=42.33  Aligned_cols=102  Identities=14%  Similarity=0.075  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHcCCCEEEEE--eeccC-CCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH---
Q psy2348          26 LKEILPILAYTGATSLLIE--WEDTL-PYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFV---   93 (131)
Q Consensus        26 lk~~i~~la~~g~n~~~l~--~ed~~-p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~---   93 (131)
                      ..+.++.|+.+|+|.++|-  +|..+ ...|+      ..+..+=|.+|+|++|+-|.++||.||=.+ .+.|+..-   
T Consensus       253 ~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDv-V~nH~~~~~~~  331 (758)
T PLN02447        253 ADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDV-VHSHASKNTLD  331 (758)
T ss_pred             HHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe-ccccccccccc
Confidence            3678999999999998763  22111 11222      112223478999999999999999998654 46666431   


Q ss_pred             -hc-----ccccccccccC----CCCceecCCChhHHHHHHHHHh
Q psy2348          94 -LK-----VKEFAKMRQNF----NDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        94 -L~-----~p~~~~l~e~~----~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                       |.     .+.|-+....+    .....++-+++++.+||.+.+.
T Consensus       332 gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~  376 (758)
T PLN02447        332 GLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLR  376 (758)
T ss_pred             cccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHH
Confidence             11     11221111100    0112577788899888877653

>PRK14511 maltooligosyl trehalose synthase; Provisional

Probab=91.99  E-value=0.99  Score=41.86  Aligned_cols=66  Identities=21%  Similarity=0.189  Sum_probs=45.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEE--eec----cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          19 APPSLTYLKEILPILAYTGATSLLIE--WED----TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        19 ~~~~~~~lk~~i~~la~~g~n~~~l~--~ed----~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      .-++.+.+.+.++.++.+|+|.+.+-  ++.    +..|.-.   ..+...=|.++.+++++-|+++||.||=.|
T Consensus        15 ~~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDi   89 (879)
T PRK14511         15 AGFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDI   89 (879)
T ss_pred             CCCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence            34788999999999999999997651  111    1111100   111222388999999999999999877554

>PRK15452 putative protease; Provisional

Probab=91.99  E-value=0.93  Score=38.81  Aligned_cols=63  Identities=14%  Similarity=0.166  Sum_probs=45.4

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCC-CCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDN-TNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFV   93 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~-~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~   93 (131)
                      +++.++..+    ..|++.+.+..+.   | + ++. .+.+|.+|+++.+++|.++|++|.-.++++=|-+.+
T Consensus        12 ~~e~l~aAi----~~GADaVY~G~~~---~-~-~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el   75 (443)
T PRK15452         12 TLKNMRYAF----AYGADAVYAGQPR---Y-S-LRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKL   75 (443)
T ss_pred             CHHHHHHHH----HCCCCEEEECCCc---c-c-hhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHH
Confidence            444444433    6799987775442   1 1 222 357899999999999999999998888888776554

>PRK14705 glycogen branching enzyme; Provisional

Probab=91.85  E-value=0.65  Score=44.44  Aligned_cols=99  Identities=10%  Similarity=0.055  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHcCCCEEEEE--eeccCCC---CCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH---H
Q psy2348          26 LKEILPILAYTGATSLLIE--WEDTLPY---SLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM---D   91 (131)
Q Consensus        26 lk~~i~~la~~g~n~~~l~--~ed~~p~---~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~---~   91 (131)
                      .+++||.|+.+|+|.+.|-  .|  +|+   .|+      ..+..+=|.+|.|++|+.|-++||.||=.+ .|+|+   .
T Consensus       768 ~~~lldYlk~LGvt~IeLmPv~e--~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~-V~nH~~~d~  844 (1224)
T PRK14705        768 AKELVDYVKWLGFTHVEFMPVAE--HPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW-VPAHFPKDS  844 (1224)
T ss_pred             HHHHHHHHHHhCCCEEEECcccc--CCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe-ccccCCcch
Confidence            3567899999999998652  22  232   222      222334489999999999999999999654 45666   2


Q ss_pred             HHhcc----cccccc----cccC-CCCceecCCChhHHHHHHHHH
Q psy2348          92 FVLKV----KEFAKM----RQNF-NDTRFICPNARSSLDLVFKMI  127 (131)
Q Consensus        92 ~~L~~----p~~~~l----~e~~-~~~~~lcp~~~~t~~f~~~ll  127 (131)
                      +.|+.    +-|.+-    .+.+ -....++-+++++.+|+-+.+
T Consensus       845 ~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a  889 (1224)
T PRK14705        845 WALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANA  889 (1224)
T ss_pred             hhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHH
Confidence            22321    112111    0100 012356778888888876543

>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase

Probab=91.62  E-value=1.1  Score=41.20  Aligned_cols=73  Identities=22%  Similarity=0.180  Sum_probs=50.7

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEE--eec----cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIE--WED----TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYS   88 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~--~ed----~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G   88 (131)
                      +.-++.+.+.+.++.|+.+|+|++.+-  ++.    +..|...   -.+..+=|.++.+++++-|.++||.||-.+ .|-
T Consensus        10 ~~~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDi-VpN   88 (825)
T TIGR02401        10 RAGFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDI-VPN   88 (825)
T ss_pred             CCCCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe-ccc
Confidence            345788999999999999999997651  110    1112110   112223389999999999999999998765 366


Q ss_pred             hHH
Q psy2348          89 DMD   91 (131)
Q Consensus        89 H~~   91 (131)
                      |+.
T Consensus        89 H~a   91 (825)
T TIGR02401        89 HMA   91 (825)
T ss_pred             ccc
Confidence            665

This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.

>TIGR02456 treS_nterm trehalose synthase

Probab=91.27  E-value=0.99  Score=39.20  Aligned_cols=68  Identities=12%  Similarity=-0.005  Sum_probs=46.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCC----CC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYS----LG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD   89 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~----~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH   89 (131)
                      .=+...|.+-+|.|+.+|+|+++|-  .-|+..    |+      -.+..+=|.+|.|++++-|.++||.||=.+ ++.|
T Consensus        24 ~Gdl~gi~~~Ldyl~~LGv~~i~L~--Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~-V~NH  100 (539)
T TIGR02456        24 IGDFPGLTSKLDYLKWLGVDALWLL--PFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL-VLNH  100 (539)
T ss_pred             ccCHHHHHHhHHHHHHCCCCEEEEC--CCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe-ccCc
Confidence            4467788889999999999998762  112111    11      112223478999999999999999988543 3444


Q ss_pred             H
Q psy2348          90 M   90 (131)
Q Consensus        90 ~   90 (131)
                      +
T Consensus       101 ~  101 (539)
T TIGR02456       101 T  101 (539)
T ss_pred             C
Confidence            4

Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).

>PRK10933 trehalose-6-phosphate hydrolase; Provisional

Probab=91.23  E-value=1  Score=39.38  Aligned_cols=70  Identities=14%  Similarity=0.161  Sum_probs=47.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEE--eec---cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIE--WED---TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~--~ed---~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~   91 (131)
                      =++..+.+-+|.|+.+|+|+++|-  ++.   ...|.-.   -.+..+=|.+|++++++-|.++||.||=.+ ++-|++
T Consensus        30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~-V~NH~s  107 (551)
T PRK10933         30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM-VFNHTS  107 (551)
T ss_pred             cCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE-CCCCcc
Confidence            367778888999999999998761  110   0112111   112334489999999999999999998665 345544

>TIGR02104 pulA_typeI pullulanase, type I

Probab=91.20  E-value=0.44  Score=42.01  Aligned_cols=104  Identities=13%  Similarity=0.076  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHcCCCEEEEE----eecc------CCC-CCC-----CCCCCCC---------CHHHHHHHHHHHHHcCC
Q psy2348          24 TYLKEILPILAYTGATSLLIE----WEDT------LPY-SLG-----FDNTNPF---------RETEIFIILAAAESNGL   78 (131)
Q Consensus        24 ~~lk~~i~~la~~g~n~~~l~----~ed~------~p~-~~~-----~~~~~~Y---------T~eeikeiv~yA~~~~I   78 (131)
                      ..+.+.||.|+.+|+|+++|-    +...      ..| .|+     ..-.+.|         +.+|.|++|+-|.++||
T Consensus       164 ~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi  243 (605)
T TIGR02104       164 NGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGI  243 (605)
T ss_pred             ccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCC
Confidence            345677999999999998651    2110      001 222     1000112         25999999999999999


Q ss_pred             eEeeccCCcchHHH----Hhc--cccccc-ccccC------CCCceecCCChhHHHHHHHHHh
Q psy2348          79 ASIPLVPLYSDMDF----VLK--VKEFAK-MRQNF------NDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        79 evIP~i~~~GH~~~----~L~--~p~~~~-l~e~~------~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      .||=.+ .+.|+..    .+.  .|.|-. ....+      ...+.++-.+|.+.+++.+.+.
T Consensus       244 ~VilDv-V~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~  305 (605)
T TIGR02104       244 RVIMDV-VYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVL  305 (605)
T ss_pred             EEEEEE-EcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHH
Confidence            999665 4566632    111  122211 11111      1123455568888888877653

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>PLN02591 tryptophan synthase

Probab=90.98  E-value=0.86  Score=36.15  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=28.7

Q ss_pred             CCHHHHHHHHHHHHHcCCeEeecc-CCcch--HHHHhc
Q psy2348          61 FRETEIFIILAAAESNGLASIPLV-PLYSD--MDFVLK   95 (131)
Q Consensus        61 YT~eeikeiv~yA~~~~IevIP~i-~~~GH--~~~~L~   95 (131)
                      +.-||..++.+.|+++||..|+++ .+.-.  +..+.+
T Consensus       115 LP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~  152 (250)
T PLN02591        115 LPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAE  152 (250)
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH
Confidence            556999999999999999999999 66544  556654

>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3

Probab=90.94  E-value=0.96  Score=38.19  Aligned_cols=109  Identities=16%  Similarity=0.089  Sum_probs=61.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEE--eec----cCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeE----eeccCCc
Q psy2348          19 APPSLTYLKEILPILAYTGATSLLIE--WED----TLPYSLG-FDNTNPFRETEIFIILAAAESNGLAS----IPLVPLY   87 (131)
Q Consensus        19 ~~~~~~~lk~~i~~la~~g~n~~~l~--~ed----~~p~~~~-~~~~~~YT~eeikeiv~yA~~~~Iev----IP~i~~~   87 (131)
                      .-++.+.++++++.++.+|++.++|-  |-.    ...--|+ ..+...+- .=++.|+++.++.|+..    -|+.=.+
T Consensus        53 ~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP-~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~  131 (394)
T PF02065_consen   53 FDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFP-NGLKPLADYIHSLGMKFGLWFEPEMVSP  131 (394)
T ss_dssp             TG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTST-THHHHHHHHHHHTT-EEEEEEETTEEES
T ss_pred             cCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhC-CcHHHHHHHHHHCCCeEEEEeccccccc
Confidence            34678999999999999999987772  210    0001123 12222222 23999999999999873    4554222


Q ss_pred             c------hHHHHhcccccccccccCCCCceecCCChhHHHHHHHHHhhh
Q psy2348          88 S------DMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        88 G------H~~~~L~~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      +      |-+++++.+.....  .+...-+||.++|++.+.+.+.++.+
T Consensus       132 ~S~l~~~hPdw~l~~~~~~~~--~~r~~~vLD~~~pev~~~l~~~i~~l  178 (394)
T PF02065_consen  132 DSDLYREHPDWVLRDPGRPPT--LGRNQYVLDLSNPEVRDYLFEVIDRL  178 (394)
T ss_dssp             SSCHCCSSBGGBTCCTTSE-E--CBTTBEEB-TTSHHHHHHHHHHHHHH
T ss_pred             hhHHHHhCccceeecCCCCCc--CcccceEEcCCCHHHHHHHHHHHHHH
Confidence            2      44444443322111  12222479999999999988887653

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....

>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []

Probab=90.89  E-value=0.52  Score=37.45  Aligned_cols=49  Identities=24%  Similarity=0.263  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        26 lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      ++++++.+..+|++.  +|+.+.         .-..+.++-.++++.|++.|.+|+||+-
T Consensus        86 ~~~yl~~~k~lGf~~--IEiSdG---------ti~l~~~~r~~~I~~~~~~Gf~v~~EvG  134 (244)
T PF02679_consen   86 FDEYLEECKELGFDA--IEISDG---------TIDLPEEERLRLIRKAKEEGFKVLSEVG  134 (244)
T ss_dssp             HHHHHHHHHHCT-SE--EEE--S---------SS---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred             HHHHHHHHHHcCCCE--EEecCC---------ceeCCHHHHHHHHHHHHHCCCEEeeccc
Confidence            445555555555555  333321         1368899999999999999999999986

Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.

>PF14488 DUF4434: Domain of unknown function (DUF4434)

Probab=90.87  E-value=2.9  Score=31.00  Aligned_cols=69  Identities=14%  Similarity=0.179  Sum_probs=48.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEEeecc--CC-CCCCCCCCCC--CCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348          19 APPSLTYLKEILPILAYTGATSLLIEWEDT--LP-YSLGFDNTNP--FRETEIFIILAAAESNGLASIPLVPLY   87 (131)
Q Consensus        19 ~~~~~~~lk~~i~~la~~g~n~~~l~~ed~--~p-~~~~~~~~~~--YT~eeikeiv~yA~~~~IevIP~i~~~   87 (131)
                      .-.+.+.=.+.+..|...|++++++.|..-  .. |+.....++.  =+.+=|..+++.|.+.|+.|..-+..-
T Consensus        15 ~~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~   88 (166)
T PF14488_consen   15 QNWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD   88 (166)
T ss_pred             cCCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence            367778889999999999999999988631  01 1111211111  134568899999999999999877654

>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]

Probab=90.85  E-value=1.8  Score=39.04  Aligned_cols=102  Identities=17%  Similarity=0.145  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHcCCCEEEE-Eee--ccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc-CCcchHHHHhc-ccc
Q psy2348          24 TYLKEILPILAYTGATSLLI-EWE--DTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV-PLYSDMDFVLK-VKE   98 (131)
Q Consensus        24 ~~lk~~i~~la~~g~n~~~l-~~e--d~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i-~~~GH~~~~L~-~p~   98 (131)
                      +..++-|++|...|.|++.+ ++-  -.-|=.|.    --+|.-|.. .++-|.+.||.||=.- .+.|+-+|..+ ||+
T Consensus        30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~----fdf~~~D~~-~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pe  104 (673)
T COG1874          30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGK----FDFTWLDEI-FLERAYKAGLYVILRTGPTGAPPAWLAKKYPE  104 (673)
T ss_pred             HHHHHHHHHHHHhCCCeeEeeeEEeeccCccccc----cCcccchHH-HHHHHHhcCceEEEecCCCCCCchHHhcCChh
Confidence            88899999999999999988 552  22232221    123333433 6999999999999666 58899999886 887


Q ss_pred             ccccccc-----CCCCceecCCChhHHHHHHHHHhhh
Q psy2348          99 FAKMRQN-----FNDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        99 ~~~l~e~-----~~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      .-...++     ......+||.++-=.+.+..|++++
T Consensus       105 iL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~i  141 (673)
T COG1874         105 ILAVDENGRVRSDGARENICPVSPVYREYLDRILQQI  141 (673)
T ss_pred             heEecCCCcccCCCcccccccccHHHHHHHHHHHHHH
Confidence            6543322     1234568999996556666665554

>PLN02960 alpha-amylase

Probab=90.83  E-value=1  Score=41.77  Aligned_cols=107  Identities=12%  Similarity=0.053  Sum_probs=63.5

Q ss_pred             CCCHHHHH-HHHHHHHHcCCCEEEEE--eecc-CCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2348          20 PPSLTYLK-EILPILAYTGATSLLIE--WEDT-LPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD   89 (131)
Q Consensus        20 ~~~~~~lk-~~i~~la~~g~n~~~l~--~ed~-~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH   89 (131)
                      +-+...+. +.|+.|+.+|+|.++|-  .|.. +...|+      ...+.+=|.+|.|++|+-|-++||.||-.+ .+.|
T Consensus       412 ~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv-V~NH  490 (897)
T PLN02960        412 ISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI-VHSY  490 (897)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe-cccc
Confidence            33555564 67999999999998762  1110 001122      223335578999999999999999999776 3555


Q ss_pred             HHH----Hhcc----c-cccccccc----CCCCceecCCChhHHHHHHHHH
Q psy2348          90 MDF----VLKV----K-EFAKMRQN----FNDTRFICPNARSSLDLVFKMI  127 (131)
Q Consensus        90 ~~~----~L~~----p-~~~~l~e~----~~~~~~lcp~~~~t~~f~~~ll  127 (131)
                      +..    -|..    + .|-.-...    .-....++-+++++.+|+-+.+
T Consensus       491 ~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna  541 (897)
T PLN02960        491 AAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNL  541 (897)
T ss_pred             cCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHH
Confidence            532    1211    1 11110000    0112356778899988887654

>TIGR03849 arch_ComA phosphosulfolactate synthase

Probab=90.72  E-value=1.1  Score=35.54  Aligned_cols=27  Identities=19%  Similarity=0.186  Sum_probs=24.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2348          60 PFRETEIFIILAAAESNGLASIPLVPL   86 (131)
Q Consensus        60 ~YT~eeikeiv~yA~~~~IevIP~i~~   86 (131)
                      ..+.++..++++.|+++|..|.||+-.
T Consensus        96 ~i~~~~~~rlI~~~~~~g~~v~~EvG~  122 (237)
T TIGR03849        96 EISLEERCNLIERAKDNGFMVLSEVGK  122 (237)
T ss_pred             CCCHHHHHHHHHHHHhCCCeEeccccc
Confidence            688999999999999999999999743

This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.

>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3

Probab=90.71  E-value=0.64  Score=36.91  Aligned_cols=58  Identities=14%  Similarity=0.117  Sum_probs=39.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348          17 KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        17 ~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~   91 (131)
                      .+..++.+.+++-+.+|..+|+|.++++.   +|..              .+..+.|.+.||-|+.|+...||..
T Consensus        29 ~g~a~~~~~~~~d~~l~k~~G~N~iR~~h---~p~~--------------~~~~~~cD~~GilV~~e~~~~~~~~   86 (298)
T PF02836_consen   29 LGRAMPDEAMERDLELMKEMGFNAIRTHH---YPPS--------------PRFYDLCDELGILVWQEIPLEGHGS   86 (298)
T ss_dssp             TBT---HHHHHHHHHHHHHTT-SEEEETT---S--S--------------HHHHHHHHHHT-EEEEE-S-BSCTS
T ss_pred             ccccCCHHHHHHHHHHHHhcCcceEEccc---ccCc--------------HHHHHHHhhcCCEEEEeccccccCc
Confidence            45667899999999999999999998821   2211              4678899999999999998866643

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=90.23  E-value=1  Score=35.77  Aligned_cols=25  Identities=36%  Similarity=0.309  Sum_probs=21.7

Q ss_pred             CCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          61 FRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        61 YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      +.-||++++++.|+++||+.|+.+-
T Consensus       126 Lp~ee~~~~~~~~~~~gl~~I~lva  150 (258)
T PRK13111        126 LPPEEAEELRAAAKKHGLDLIFLVA  150 (258)
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEEeC
Confidence            4559999999999999999999553

>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional

Probab=89.95  E-value=0.82  Score=43.74  Aligned_cols=100  Identities=15%  Similarity=0.119  Sum_probs=59.2

Q ss_pred             HHHHHHHHcCCCEEEE----EeeccC--------CCCCC-----CCCCCCC---CHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348          28 EILPILAYTGATSLLI----EWEDTL--------PYSLG-----FDNTNPF---RETEIFIILAAAESNGLASIPLVPLY   87 (131)
Q Consensus        28 ~~i~~la~~g~n~~~l----~~ed~~--------p~~~~-----~~~~~~Y---T~eeikeiv~yA~~~~IevIP~i~~~   87 (131)
                      +.|+.|.++|+|++.|    +..+..        .|.|+     ..-...|   |.+|.|++|+-|.++||+||=.+ .+
T Consensus       191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv-V~  269 (1221)
T PRK14510        191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV-VF  269 (1221)
T ss_pred             hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE-cc
Confidence            5678999999999865    221110        12333     1111234   89999999999999999999665 45


Q ss_pred             chHHHHhc-----------cccccccc--------ccCCCCceecCCChhHHHHHHHHHh
Q psy2348          88 SDMDFVLK-----------VKEFAKMR--------QNFNDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        88 GH~~~~L~-----------~p~~~~l~--------e~~~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      .|+..--.           ...|-...        ......+.++-.+|.+.+++.+.+.
T Consensus       270 NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr  329 (1221)
T PRK14510        270 NHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLR  329 (1221)
T ss_pred             ccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHH
Confidence            56543211           11111111        0111224556668888888887764

>TIGR00674 dapA dihydrodipicolinate synthase

Probab=89.57  E-value=4  Score=32.35  Aligned_cols=102  Identities=6%  Similarity=0.005  Sum_probs=59.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcchHHHHhcc
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYSDMDFVLKV   96 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~GH~~~~L~~   96 (131)
                      -...+.+.++++.+...|++++.+        -|.......+|.+|-+++++.+.+.   .+.||.-+-...--+.+-..
T Consensus        15 ~iD~~~~~~~i~~l~~~Gv~Gi~~--------~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a   86 (285)
T TIGR00674        15 SVDFAALEKLIDFQIENGTDAIVV--------VGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLT   86 (285)
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEE--------CccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHH
Confidence            367889999999999999999765        1112223478888888888776654   47777766544332322111


Q ss_pred             cccccccccC---CCCceecCCChhHHHHHHHHHhh
Q psy2348          97 KEFAKMRQNF---NDTRFICPNARSSLDLVFKMIGR  129 (131)
Q Consensus        97 p~~~~l~e~~---~~~~~lcp~~~~t~~f~~~ll~e  129 (131)
                      ......+-+.   ..|..+.+++++.+++.+++.+.
T Consensus        87 ~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~  122 (285)
T TIGR00674        87 KFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEE  122 (285)
T ss_pred             HHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhc
Confidence            1111221110   12233445566677777776654

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.

>PRK03170 dihydrodipicolinate synthase; Provisional

Probab=88.76  E-value=5  Score=31.83  Aligned_cols=61  Identities=13%  Similarity=0.113  Sum_probs=43.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcc
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYS   88 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~G   88 (131)
                      -...+.++++++.|...|++++.+-        |.......+|.+|-+++++.+.+.   .+.||.-+-..+
T Consensus        18 ~iD~~~l~~~i~~l~~~Gv~gi~~~--------Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~   81 (292)
T PRK03170         18 SVDFAALRKLVDYLIANGTDGLVVV--------GTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNS   81 (292)
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEEC--------CcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCch
Confidence            4678899999999999999997751        212233478888888888777664   366666655444

>KOG3698|consensus

Probab=88.70  E-value=0.42  Score=42.62  Aligned_cols=65  Identities=18%  Similarity=0.192  Sum_probs=46.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHH---HHHHHHHHHHcCCeEeecc
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETE---IFIILAAAESNGLASIPLV   84 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~ee---ikeiv~yA~~~~IevIP~i   84 (131)
                      |.+.+.+.=|.++++|..+|+|+.+--=.|.|.-+..||  .-||.||   ++.+++.|++++|+.|=-|
T Consensus        27 GRPWt~EQRK~LFrrl~~~gl~tYlYAPKDDyKHR~~WR--ElY~vEEa~~L~~Li~aAke~~i~F~YAi   94 (891)
T KOG3698|consen   27 GRPWTPEQRKHLFRRLNQLGLTTYLYAPKDDYKHRSLWR--ELYNVEEATYLRNLIEAAKENNINFVYAI   94 (891)
T ss_pred             CCCCCHHHHHHHHHHHHhcccceeeecccchhHHHHHHH--HHhhhHHHHHHHHHHHHHHhcCceEEEEc
Confidence            778899999999999999999964332222221111155  5688776   5678999999999988544

>PRK03705 glycogen debranching enzyme; Provisional

Probab=88.51  E-value=1.1  Score=40.32  Aligned_cols=99  Identities=14%  Similarity=0.178  Sum_probs=59.7

Q ss_pred             HHHHHHHcCCCEEEE----Eeecc--------CCCCCC-----CCCCCCCC------HHHHHHHHHHHHHcCCeEeeccC
Q psy2348          29 ILPILAYTGATSLLI----EWEDT--------LPYSLG-----FDNTNPFR------ETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        29 ~i~~la~~g~n~~~l----~~ed~--------~p~~~~-----~~~~~~YT------~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      .||.|+.+|+|+++|    ++...        -.|.|+     ..-.+.|.      .+|.|++|+-|.++||+||=.+ 
T Consensus       184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv-  262 (658)
T PRK03705        184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV-  262 (658)
T ss_pred             chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE-
Confidence            489999999999875    12110        012333     11112332      4799999999999999999776 


Q ss_pred             CcchHHHH--------hc---cccccccccc------CCCCceecCCChhHHHHHHHHHh
Q psy2348          86 LYSDMDFV--------LK---VKEFAKMRQN------FNDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        86 ~~GH~~~~--------L~---~p~~~~l~e~------~~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      .+.|+...        ++   .+.|-.+.+.      ....+.++-.+|.+.+++.+.+.
T Consensus       263 V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~  322 (658)
T PRK03705        263 VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLR  322 (658)
T ss_pred             cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHH
Confidence            45666532        11   1222211111      11234677789999999887764

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=88.51  E-value=5  Score=32.18  Aligned_cols=101  Identities=10%  Similarity=0.007  Sum_probs=63.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHH--c-CCeEeeccCCcchHHHHhccc
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAES--N-GLASIPLVPLYSDMDFVLKVK   97 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~--~-~IevIP~i~~~GH~~~~L~~p   97 (131)
                      ...+.++++++++...|++++.+        -|.......+|.+|-+++++.+.+  . .+.||.-+-....-+.+-...
T Consensus        18 iD~~~l~~lv~~~~~~Gv~gi~v--------~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~   89 (294)
T TIGR02313        18 IDEEALRELIEFQIEGGSHAISV--------GGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTK   89 (294)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEE--------CccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHH
Confidence            67889999999999999999765        121223347999999998886654  2 378887777766666653211


Q ss_pred             ccccccccC---CCCceecCCChhHHHHHHHHHhh
Q psy2348          98 EFAKMRQNF---NDTRFICPNARSSLDLVFKMIGR  129 (131)
Q Consensus        98 ~~~~l~e~~---~~~~~lcp~~~~t~~f~~~ll~e  129 (131)
                      ....++-+.   ..|.-+.|+.++.+++.+.+.+.
T Consensus        90 ~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a  124 (294)
T TIGR02313        90 FAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADA  124 (294)
T ss_pred             HHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHh
Confidence            122222111   12233455666677777777654

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

>PTZ00372 endonuclease 4-like protein; Provisional

Probab=88.46  E-value=4.4  Score=34.59  Aligned_cols=72  Identities=6%  Similarity=0.098  Sum_probs=54.2

Q ss_pred             ceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348           9 EVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYS   88 (131)
Q Consensus         9 ~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G   88 (131)
                      .-|.|+-+++.      +..-+.....+|+|++++.....-.    |. ...+|.++++++.+.++++||.+.|.   ..
T Consensus       132 ~iGaHvSiaGG------~~~a~~~a~~~g~~afqiF~~npr~----w~-~~~~~~~~~~~f~~~~~~~gi~~~~i---~~  197 (413)
T PTZ00372        132 YIGAHVSASGG------VDNSPINAYNIAGQAFALFLKNQRT----WN-SPPLSDETIDKFKENCKKYNYDPKFI---LP  197 (413)
T ss_pred             eEEEEEecccc------HHHHHHHHHHcCCCEEEEEcCCCcc----CC-CCCCCHHHHHHHHHHHHHcCCCcceE---Ee
Confidence            45788888764      4557888889999999997754322    33 24899999999999999999986553   33


Q ss_pred             hHHHHh
Q psy2348          89 DMDFVL   94 (131)
Q Consensus        89 H~~~~L   94 (131)
                      |+.+.+
T Consensus       198 HapYlI  203 (413)
T PTZ00372        198 HGSYLI  203 (413)
T ss_pred             ecCcee
Confidence            877764

>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=88.10  E-value=4.9  Score=32.01  Aligned_cols=76  Identities=13%  Similarity=0.048  Sum_probs=53.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK   95 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~   95 (131)
                      +-+.+.+++.++.+...|++.+.++......-.........+|.++++++++.|+++|+.|.--....+..+.+++
T Consensus       116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~  191 (342)
T cd01299         116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAIR  191 (342)
T ss_pred             ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            3457888999999999999999888753211011011223789999999999999999998866655555555554

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis

Probab=88.05  E-value=5.8  Score=31.25  Aligned_cols=58  Identities=10%  Similarity=0.114  Sum_probs=39.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccC
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVP   85 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~   85 (131)
                      =...+.++++++.|...|++++.+-        |.......+|.+|-+++++.+.+.   .+.||.-+-
T Consensus        17 ~iD~~~~~~~i~~l~~~Gv~gl~v~--------GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~   77 (284)
T cd00950          17 SVDFDALERLIEFQIENGTDGLVVC--------GTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG   77 (284)
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEEC--------CCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC
Confidence            3678899999999999999997651        212223467777777777776665   355554443

It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.

>PRK14582 pgaB outer membrane N-deacetylase; Provisional

Probab=87.36  E-value=14  Score=33.57  Aligned_cols=118  Identities=11%  Similarity=0.083  Sum_probs=71.4

Q ss_pred             CCceeEEeecCCCC-C----CHHHHHHHHHHHHHcCCCEEEEEe-ec----------cCCCCCCCC-CCCCCCHHHHHHH
Q psy2348           7 FKEVLVHLDLKGAP-P----SLTYLKEILPILAYTGATSLLIEW-ED----------TLPYSLGFD-NTNPFRETEIFII   69 (131)
Q Consensus         7 f~~Rg~mlD~~~~~-~----~~~~lk~~i~~la~~g~n~~~l~~-ed----------~~p~~~~~~-~~~~YT~eeikei   69 (131)
                      -..|.+|.|+---. +    ....|..+|+.|..+|+|++.|.- .|          -||+ .+++ ...-|+.-..  .
T Consensus       312 ~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp~r~d~f~~~aw--~  388 (671)
T PRK14582        312 SPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLPMRADLFNRVAW--Q  388 (671)
T ss_pred             CCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cccccccCCcCHHHH--H
Confidence            34799999884222 3    357899999999999999998876 11          1333 1111 1123443222  2


Q ss_pred             HHHHHHcCCeEeeccCCcchHHHHhccccccccc-------ccCCCCceecCCChhHHHHHHHHHhhh
Q psy2348          70 LAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMR-------QNFNDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        70 v~yA~~~~IevIP~i~~~GH~~~~L~~p~~~~l~-------e~~~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                        .|.++|++|---.++.+=.. --+.+.-..+.       -.+....-|.|.+|++.+.|.+++.|+
T Consensus       389 --l~~r~~v~v~AWmp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dl  453 (671)
T PRK14582        389 --LRTRAGVNVYAWMPVLSFDL-DPTLPRVKRLDTGEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDL  453 (671)
T ss_pred             --HHHhhCCEEEEeccceeecc-CCCcchhhhccccCCccccCCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence              28889999987777765211 00111111111       011112349999999999999999986

>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3

Probab=87.31  E-value=1.4  Score=36.03  Aligned_cols=58  Identities=21%  Similarity=0.159  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEe--eccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348          23 LTYLKEILPILAYTGATSLLIEW--EDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~~--ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      .++-...+++|...|+|++..|+  +..-|-+|...   +=-..|++.+++.|++.|+-||=-
T Consensus        23 ~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~d---f~g~~dl~~f~~~a~~~gl~vilr   82 (319)
T PF01301_consen   23 PEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFD---FTGNRDLDRFLDLAQENGLYVILR   82 (319)
T ss_dssp             GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB------SGGG-HHHHHHHHHHTT-EEEEE
T ss_pred             hhHHHHHHHHHHhCCcceEEEeccccccCCCCCccc---ccchhhHHHHHHHHHHcCcEEEec
Confidence            77888999999999999997764  43334444311   111379999999999999988843

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=87.20  E-value=7.8  Score=30.37  Aligned_cols=101  Identities=11%  Similarity=0.102  Sum_probs=59.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcchHHHHhcc
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYSDMDFVLKV   96 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~GH~~~~L~~   96 (131)
                      -...+.++++++.|...|++++.+        -|.......+|.+|-+++++.+.+.   .+.||--+-...=.+ .++.
T Consensus        14 ~iD~~~~~~~i~~l~~~Gv~gi~~--------~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~-~i~~   84 (281)
T cd00408          14 EVDLDALRRLVEFLIEAGVDGLVV--------LGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTRE-AIEL   84 (281)
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEE--------CCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHH-HHHH
Confidence            367788999999999999999765        1212234478999999998887764   366665553322211 2221


Q ss_pred             -cccccccccC---CCCceecCCChhHHHHHHHHHhh
Q psy2348          97 -KEFAKMRQNF---NDTRFICPNARSSLDLVFKMIGR  129 (131)
Q Consensus        97 -p~~~~l~e~~---~~~~~lcp~~~~t~~f~~~ll~e  129 (131)
                       ....+++-+.   ..|.-+.+++++.+++.+++.+.
T Consensus        85 a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~  121 (281)
T cd00408          85 ARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADA  121 (281)
T ss_pred             HHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhc
Confidence             1111221110   11223345667777777777654

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>PLN02417 dihydrodipicolinate synthase

Probab=86.96  E-value=7.3  Score=30.95  Aligned_cols=101  Identities=7%  Similarity=0.009  Sum_probs=58.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcchHHHHhcc
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYSDMDFVLKV   96 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~GH~~~~L~~   96 (131)
                      -...+.++++++++...|++++.+        -|.......+|.+|-+++++.+.+.   .+.||.-+-...=.+.+-..
T Consensus        18 ~iD~~~~~~~i~~l~~~Gv~Gi~~--------~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a   89 (280)
T PLN02417         18 RFDLEAYDSLVNMQIENGAEGLIV--------GGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHAT   89 (280)
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEE--------CccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHH
Confidence            367889999999999999999765        1212233478888888888776654   25555555443333333211


Q ss_pred             cccccccccC---CCCceecCCChhHHHHHHHHHh
Q psy2348          97 KEFAKMRQNF---NDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        97 p~~~~l~e~~---~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      .....++-+.   ..|.-..|+.++.+++.+++.+
T Consensus        90 ~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~  124 (280)
T PLN02417         90 EQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLD  124 (280)
T ss_pred             HHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHh
Confidence            1122222110   1122344566677777777654

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=86.84  E-value=2.1  Score=34.12  Aligned_cols=28  Identities=14%  Similarity=0.095  Sum_probs=23.7

Q ss_pred             CCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348          61 FRETEIFIILAAAESNGLASIPLVPLYS   88 (131)
Q Consensus        61 YT~eeikeiv~yA~~~~IevIP~i~~~G   88 (131)
                      +.-||..++.+.|+++||..|+.+.---
T Consensus       128 LP~ee~~~~~~~~~~~gi~~I~lv~PtT  155 (263)
T CHL00200        128 LPYEESDYLISVCNLYNIELILLIAPTS  155 (263)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            4458999999999999999999986433

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)

Probab=86.66  E-value=11  Score=30.01  Aligned_cols=100  Identities=12%  Similarity=0.019  Sum_probs=59.2

Q ss_pred             CCHHHHHHHHHHHHHc-CCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcchHHHHhcc
Q psy2348          21 PSLTYLKEILPILAYT-GATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYSDMDFVLKV   96 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~-g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~GH~~~~L~~   96 (131)
                      ...+.++++++.+... |++++.+        -|.......+|.+|-+++++.+.+.   .+.||--+-...--+ +++.
T Consensus        18 iD~~~~~~~i~~l~~~~Gv~gi~~--------~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~-ai~~   88 (288)
T cd00954          18 INEDVLRAIVDYLIEKQGVDGLYV--------NGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKE-SQEL   88 (288)
T ss_pred             CCHHHHHHHHHHHHhcCCCCEEEE--------CcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHH-HHHH
Confidence            6788999999999999 9999765        1212233478888888888877663   355665554433322 2221


Q ss_pred             -cccccccccC---CCCceecCCChhHHHHHHHHHhh
Q psy2348          97 -KEFAKMRQNF---NDTRFICPNARSSLDLVFKMIGR  129 (131)
Q Consensus        97 -p~~~~l~e~~---~~~~~lcp~~~~t~~f~~~ll~e  129 (131)
                       ....+.+-+.   ..|..+.|++++.+++.+++.+.
T Consensus        89 a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a  125 (288)
T cd00954          89 AKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAA  125 (288)
T ss_pred             HHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHh
Confidence             1111211110   11223346667788887777654

It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.

>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A

Probab=86.39  E-value=0.62  Score=30.27  Aligned_cols=41  Identities=20%  Similarity=0.233  Sum_probs=28.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHH-hcccccccc
Q psy2348          59 NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFV-LKVKEFAKM  102 (131)
Q Consensus        59 ~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~-L~~p~~~~l  102 (131)
                      .-+...=+++.++||+++|..|+|.=   .=.... -+||+|+.+
T Consensus        37 qGia~~L~~~~l~~a~~~~~kv~p~C---~y~~~~~~~hpey~dl   78 (78)
T PF14542_consen   37 QGIAKKLVEAALDYARENGLKVVPTC---SYVAKYFRRHPEYQDL   78 (78)
T ss_dssp             TTHHHHHHHHHHHHHHHTT-EEEETS---HHHHHHHHH-GGGTTT
T ss_pred             CcHHHHHHHHHHHHHHHCCCEEEEEC---HHHHHHHHhCcccccC
Confidence            46788889999999999999999962   222223 358888653

>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative

Probab=86.31  E-value=1.2  Score=34.85  Aligned_cols=60  Identities=10%  Similarity=0.031  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348          23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      ++.+++.++..+.+|++.+.+.-.+ .++.......-....+-+++++++|+++||++.=|
T Consensus        93 ~~~~~~~i~~a~~lG~~~v~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE  152 (279)
T TIGR00542        93 LEIMEKAIQLARDLGIRTIQLAGYD-VYYEEHDEETRRRFREGLKEAVELAARAQVTLAVE  152 (279)
T ss_pred             HHHHHHHHHHHHHhCCCEEEecCcc-cccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence            4578999999999999988763211 11111000001234577899999999999987655

This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.

>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea

Probab=86.17  E-value=2.4  Score=35.37  Aligned_cols=64  Identities=13%  Similarity=0.065  Sum_probs=42.9

Q ss_pred             eEEeecCCCCCCHHHHHHHHHHHHHcCCCEEE--EEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLL--IEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        11 g~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~--l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      |+.+-+...  +.+..+++|..++.+|++.+.  |++..         ....-..+++++|.++|+++|++||.-|+
T Consensus         3 GiSvY~~~~--~~~~~~~yi~~a~~~Gf~~iFTSL~ipe---------~~~~~~~~~~~~l~~~a~~~~~~v~~Dis   68 (357)
T PF05913_consen    3 GISVYPGQS--SFEENKAYIEKAAKYGFKRIFTSLHIPE---------DDPEDYLERLKELLKLAKELGMEVIADIS   68 (357)
T ss_dssp             EEEE-CCCS---HHHHHHHHHHHHCTTEEEEEEEE------------------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred             EEEEeCCCC--CHHHHHHHHHHHHHCCCCEEECCCCcCC---------CCHHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence            555555444  788999999999999998764  22211         11234578999999999999999999885

The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.

>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=86.12  E-value=2.3  Score=32.98  Aligned_cols=60  Identities=13%  Similarity=0.054  Sum_probs=44.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348          19 APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP   82 (131)
Q Consensus        19 ~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP   82 (131)
                      ++|.--.+.+.++.++.+|+.++.+...+.   .. ......+|.++++++.+.++++||+|.-
T Consensus        11 ~~~~~~~~~e~~~~~~~~G~~~iEl~~~~~---~~-~~~~~~~~~~~~~~l~~~l~~~Gl~i~~   70 (284)
T PRK13210         11 ALPKHLSWEERLVFAKELGFDFVEMSVDES---DE-RLARLDWSKEERLSLVKAIYETGVRIPS   70 (284)
T ss_pred             hcCCCCCHHHHHHHHHHcCCCeEEEecCCc---cc-ccccccCCHHHHHHHHHHHHHcCCCceE
Confidence            444444678999999999999988854321   11 1122357889999999999999999863

>PRK10076 pyruvate formate lyase II activase; Provisional

Probab=86.01  E-value=5.7  Score=30.62  Aligned_cols=61  Identities=13%  Similarity=0.099  Sum_probs=39.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEeeccC---CCC--C--C-CCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIEWEDTL---PYS--L--G-FDNTNPFRETEIFIILAAAESNGLASI   81 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~---p~~--~--~-~~~~~~YT~eeikeiv~yA~~~~IevI   81 (131)
                      -+.+.++++.+.++.++...+.|---+.+   .|.  |  + +.+-...|+++++++.+.|+++|+.++
T Consensus       142 d~~e~i~~ia~~l~~l~~~~~~llpyh~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~  210 (213)
T PRK10076        142 LSRENMQQALDVLIPLGIKQIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVT  210 (213)
T ss_pred             CCHHHHHHHHHHHHHcCCceEEEecCCccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEE
Confidence            35677888888888776654432111111   000  0  0 333447899999999999999999985

>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional

Probab=85.38  E-value=4.4  Score=40.24  Aligned_cols=73  Identities=21%  Similarity=0.175  Sum_probs=50.3

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEE--ee----ccCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIE--WE----DTLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYS   88 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~--~e----d~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G   88 (131)
                      +.-++.+.+.+.++.|+.+|+|.+.+-  ++    .+..|...   -.+..+=|.++.+++++-|.++||.||=.+ .|.
T Consensus       752 ~~~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDi-V~N  830 (1693)
T PRK14507        752 HKDFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDI-VPN  830 (1693)
T ss_pred             CCCCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEe-ccc
Confidence            346789999999999999999997651  11    01112110   112223379999999999999999887655 456


Q ss_pred             hHH
Q psy2348          89 DMD   91 (131)
Q Consensus        89 H~~   91 (131)
                      |+.
T Consensus       831 H~~  833 (1693)
T PRK14507        831 HMG  833 (1693)
T ss_pred             ccC
Confidence            665

>PRK15447 putative protease; Provisional

Probab=84.89  E-value=6.7  Score=31.66  Aligned_cols=66  Identities=5%  Similarity=-0.037  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeE---eeccC-CcchHHHHh
Q psy2348          22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLAS---IPLVP-LYSDMDFVL   94 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~Iev---IP~i~-~~GH~~~~L   94 (131)
                      +...+..+...++.-|+..+.+-. ..|   + .|  ..+|.+|+++++++|+++|.+|   +|-|- ..+.+..+.
T Consensus        13 p~~~~~~~~~~~~~~gaDaVY~g~-~~~---~-~R--~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~   82 (301)
T PRK15447         13 PKETVRDFYQRAADSPVDIVYLGE-TVC---S-KR--RELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELR   82 (301)
T ss_pred             CCCCHHHHHHHHHcCCCCEEEECC-ccC---C-Cc--cCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHH
Confidence            344566788888888999877752 222   2 33  2689999999999999999998   56664 355555554

>PRK04147 N-acetylneuraminate lyase; Provisional

Probab=84.85  E-value=11  Score=29.93  Aligned_cols=58  Identities=12%  Similarity=0.037  Sum_probs=38.9

Q ss_pred             CCHHHHHHHHHHHHH-cCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCC
Q psy2348          21 PSLTYLKEILPILAY-TGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPL   86 (131)
Q Consensus        21 ~~~~~lk~~i~~la~-~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~   86 (131)
                      ...+.++++++++.. .|++++.+        -|.......+|.+|-+++++.+.+.   .+.||.-+-.
T Consensus        21 iD~~~~~~li~~l~~~~Gv~gi~v--------~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~   82 (293)
T PRK04147         21 IDEQGLRRLVRFNIEKQGIDGLYV--------GGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS   82 (293)
T ss_pred             cCHHHHHHHHHHHHhcCCCCEEEE--------CCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC
Confidence            678899999999999 99999765        1111122367777777777665542   2555555533

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=84.57  E-value=3.9  Score=31.90  Aligned_cols=24  Identities=33%  Similarity=0.182  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHcCCeEeeccCC
Q psy2348          63 ETEIFIILAAAESNGLASIPLVPL   86 (131)
Q Consensus        63 ~eeikeiv~yA~~~~IevIP~i~~   86 (131)
                      -||+.++++.|+++|+..|+.+.-
T Consensus       115 ~ee~~~~~~~~~~~g~~~i~~i~P  138 (242)
T cd04724         115 PEEAEEFREAAKEYGLDLIFLVAP  138 (242)
T ss_pred             HHHHHHHHHHHHHcCCcEEEEeCC
Confidence            479999999999999999998763

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=84.33  E-value=6.1  Score=30.74  Aligned_cols=61  Identities=15%  Similarity=0.126  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc---hHHHHhc
Q psy2348          23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYS---DMDFVLK   95 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G---H~~~~L~   95 (131)
                      +....++++.++..|++++.++-   -|++         +-++.++++++|+++|++++++++.--   -++.+++
T Consensus        87 ~~~~~~~i~~~~~~Gadgvii~d---lp~e---------~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~  150 (244)
T PRK13125         87 VDSLDNFLNMARDVGADGVLFPD---LLID---------YPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK  150 (244)
T ss_pred             hhCHHHHHHHHHHcCCCEEEECC---CCCC---------cHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH
Confidence            44567788899999999988841   1121         136899999999999999999998833   4555555

>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E

Probab=84.30  E-value=3.1  Score=33.84  Aligned_cols=59  Identities=19%  Similarity=0.153  Sum_probs=44.4

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      +.-++.+.++++++.++.+|...+.+        .    +|.++-..++.+|+++|+++|+.+  .+.|=|.+
T Consensus        34 ~~~l~~e~~~~ii~~~~~~g~~~v~~--------~----GGEPll~~~~~~ii~~~~~~g~~~--~l~TNG~l   92 (358)
T TIGR02109        34 KAELTTEEWTDVLTQAAELGVLQLHF--------S----GGEPLARPDLVELVAHARRLGLYT--NLITSGVG   92 (358)
T ss_pred             cCCCCHHHHHHHHHHHHhcCCcEEEE--------e----CccccccccHHHHHHHHHHcCCeE--EEEeCCcc
Confidence            45688999999999999988754333        1    234555667999999999999754  67888863

This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.

>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase

Probab=84.19  E-value=5.8  Score=30.39  Aligned_cols=60  Identities=8%  Similarity=-0.040  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348          23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      .+.+++.|+..+.+|++.+.+.... -|.............+-++++.++|++.||.+.=|
T Consensus        83 ~~~~~~~i~~a~~lg~~~i~~~~g~-~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE  142 (254)
T TIGR03234        83 REGVALAIAYARALGCPQVNCLAGK-RPAGVSPEEARATLVENLRYAADALDRIGLTLLIE  142 (254)
T ss_pred             HHHHHHHHHHHHHhCCCEEEECcCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            5788999999999999987663311 01100000000122356899999999999998866

This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.

>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]

Probab=84.08  E-value=2.9  Score=34.44  Aligned_cols=54  Identities=22%  Similarity=0.186  Sum_probs=38.0

Q ss_pred             HHHHHHHHHcCCCEEEEEeeccCCCCCC---CCC---CCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348          27 KEILPILAYTGATSLLIEWEDTLPYSLG---FDN---TNPFRETEIFIILAAAESNGLASIP   82 (131)
Q Consensus        27 k~~i~~la~~g~n~~~l~~ed~~p~~~~---~~~---~~~YT~eeikeiv~yA~~~~IevIP   82 (131)
                      |.+++++|+.=-|.+.+-+  |+.|..+   +.+   ....|++|+.+..+||++.|++-+.
T Consensus       274 kpI~~wiae~~g~~~~vNi--M~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~gl~~~~  333 (335)
T COG1313         274 KPILRWIAENLGNDVRVNI--MFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKLGLTNIL  333 (335)
T ss_pred             HHHHHHHHHhCCCCeeEEe--hhhccchhhhhhchhhcccCCHHHHHHHHHHHHHcCCceee
Confidence            6788888887655544433  4444332   111   2489999999999999999998764

>TIGR00587 nfo apurinic endonuclease (APN1)

Probab=83.99  E-value=6.4  Score=31.01  Aligned_cols=69  Identities=20%  Similarity=0.121  Sum_probs=50.2

Q ss_pred             eeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2348          10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD   89 (131)
Q Consensus        10 Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH   89 (131)
                      -|.|+-+++      -+.+-++.++++|++++++..+...-    |. ...+|.++++++-+.++++++.+.+   +.-|
T Consensus         3 ~g~h~s~~g------~~~~a~~~~~~~G~~~~qif~~~P~~----w~-~~~~~~~~~~~~~~~~~~~~~~~~~---i~~H   68 (274)
T TIGR00587         3 LGAHVSAAG------GLQAAYNRAAEIGATAFMFFLKSPRW----WR-RPMLEEEVIDWFKAALETNKNLSQI---VLVH   68 (274)
T ss_pred             eEEEEeccC------CHHHHHHHHHHhCCCEEEEEecCccc----cC-CCCCCHHHHHHHHHHHHHcCCCCcc---eecc
Confidence            467777775      35678999999999999996654221    32 3478999999999999999987433   2445


Q ss_pred             HHH
Q psy2348          90 MDF   92 (131)
Q Consensus        90 ~~~   92 (131)
                      +-+
T Consensus        69 apy   71 (274)
T TIGR00587        69 APY   71 (274)
T ss_pred             CCe
Confidence            444

All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional

Probab=83.91  E-value=4  Score=33.52  Aligned_cols=59  Identities=22%  Similarity=0.134  Sum_probs=44.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      +..++.+.++++|+.++..|...+.+        .    +|.++...++.+|+++|+++|+.+  .+.|=|.+
T Consensus        43 ~~~~~~e~~~~ii~~~~~~g~~~v~~--------~----GGEPll~~~~~~il~~~~~~g~~~--~i~TNG~l  101 (378)
T PRK05301         43 GAELSTEEWIRVLREARALGALQLHF--------S----GGEPLLRKDLEELVAHARELGLYT--NLITSGVG  101 (378)
T ss_pred             cCCCCHHHHHHHHHHHHHcCCcEEEE--------E----CCccCCchhHHHHHHHHHHcCCcE--EEECCCcc
Confidence            45688999999999999988644332        1    245666778999999999999755  57888863

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3

Probab=83.45  E-value=1  Score=32.70  Aligned_cols=62  Identities=16%  Similarity=0.141  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC--CCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLG--FDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~--~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      ++.+++.++..+.+|+..+.+..-. ++....  ....-....+-++++.++|+++|++|.-|--
T Consensus        70 ~~~~~~~i~~a~~lg~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~  133 (213)
T PF01261_consen   70 LEYLKKAIDLAKRLGAKYIVVHSGR-YPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENH  133 (213)
T ss_dssp             HHHHHHHHHHHHHHTBSEEEEECTT-ESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-S
T ss_pred             HHHHHHHHHHHHHhCCCceeecCcc-cccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecc
Confidence            8899999999999999988886431 111110  0001134456889999999999999887743

1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=83.44  E-value=5  Score=38.28  Aligned_cols=107  Identities=15%  Similarity=0.155  Sum_probs=61.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEE--ee----cc--------------CCC-CCC-----CCCCCCC---------CHHH
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIE--WE----DT--------------LPY-SLG-----FDNTNPF---------RETE   65 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~--~e----d~--------------~p~-~~~-----~~~~~~Y---------T~ee   65 (131)
                      =+...|.+-|+.|+.+|+|.++|-  ++    +-              -.| .|+     ..-.+.|         +.+|
T Consensus       477 Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~E  556 (1111)
T TIGR02102       477 GTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAE  556 (1111)
T ss_pred             cCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHH
Confidence            355566667899999999998652  11    10              012 233     1111233         2589


Q ss_pred             HHHHHHHHHHcCCeEeeccCCcchHHHH--hc--ccccccccc-cCC-----CCceecCCChhHHHHHHHHHh
Q psy2348          66 IFIILAAAESNGLASIPLVPLYSDMDFV--LK--VKEFAKMRQ-NFN-----DTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        66 ikeiv~yA~~~~IevIP~i~~~GH~~~~--L~--~p~~~~l~e-~~~-----~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      .|++|+-|.++||.||=.+ .+-|+...  +.  .|.|-+... .+.     ..+.+...++.+.++|-+.+.
T Consensus       557 fK~LV~alH~~GI~VILDV-VyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~  628 (1111)
T TIGR02102       557 FKNLINEIHKRGMGVILDV-VYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIK  628 (1111)
T ss_pred             HHHHHHHHHHCCCEEEEec-ccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHH
Confidence            9999999999999999665 56776432  11  233332211 111     123344556777787776553

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=83.33  E-value=4.4  Score=32.02  Aligned_cols=28  Identities=25%  Similarity=0.200  Sum_probs=23.0

Q ss_pred             CCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348          61 FRETEIFIILAAAESNGLASIPLVPLYS   88 (131)
Q Consensus        61 YT~eeikeiv~yA~~~~IevIP~i~~~G   88 (131)
                      ..-+|..++++.|+++|+..|+.+.-=-
T Consensus       124 lp~ee~~~~~~~~~~~gl~~i~lv~P~T  151 (256)
T TIGR00262       124 LPLEESGDLVEAAKKHGVKPIFLVAPNA  151 (256)
T ss_pred             CChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            3448999999999999999998886433

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>TIGR00683 nanA N-acetylneuraminate lyase

Probab=82.76  E-value=15  Score=29.39  Aligned_cols=100  Identities=10%  Similarity=0.016  Sum_probs=55.3

Q ss_pred             CCHHHHHHHHHHHHHcC-CCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcchHHHHhcc
Q psy2348          21 PSLTYLKEILPILAYTG-ATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYSDMDFVLKV   96 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g-~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~GH~~~~L~~   96 (131)
                      ...+.++++++.+...| ++++.+        -|.......+|.||-+++++.+.+.   .+.||.-+-..+ +...++.
T Consensus        18 iD~~~~~~~i~~~i~~G~v~gi~~--------~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~-t~~~i~l   88 (290)
T TIGR00683        18 INEKGLRQIIRHNIDKMKVDGLYV--------GGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVN-LKEAVEL   88 (290)
T ss_pred             cCHHHHHHHHHHHHhCCCcCEEEE--------CCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCC-HHHHHHH
Confidence            67788999999999999 998765        1111223467777777777766554   355555443333 2222322


Q ss_pred             ccc-ccccccC---CCCceecCCChhHHHHHHHHHhh
Q psy2348          97 KEF-AKMRQNF---NDTRFICPNARSSLDLVFKMIGR  129 (131)
Q Consensus        97 p~~-~~l~e~~---~~~~~lcp~~~~t~~f~~~ll~e  129 (131)
                      -++ ..++-+.   ..|.-++++.++.+++.+++.+.
T Consensus        89 a~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~  125 (290)
T TIGR00683        89 GKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAE  125 (290)
T ss_pred             HHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhh
Confidence            111 1111110   12334455566677777666553

N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.

>PRK09856 fructoselysine 3-epimerase; Provisional

Probab=82.74  E-value=4.9  Score=31.09  Aligned_cols=51  Identities=18%  Similarity=0.125  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348          25 YLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI   81 (131)
Q Consensus        25 ~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI   81 (131)
                      -+.+.++.++++|++++.+....  |..  .  ..-.++.+++++-+.++++||+|+
T Consensus        14 ~l~~~l~~~~~~G~~~vEl~~~~--~~~--~--~~~~~~~~~~~l~~~~~~~gl~v~   64 (275)
T PRK09856         14 PIEHAFRDASELGYDGIEIWGGR--PHA--F--APDLKAGGIKQIKALAQTYQMPII   64 (275)
T ss_pred             CHHHHHHHHHHcCCCEEEEccCC--ccc--c--ccccCchHHHHHHHHHHHcCCeEE
Confidence            37899999999999998773211  100  1  113577899999999999999985

>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair

Probab=82.52  E-value=6.8  Score=30.51  Aligned_cols=53  Identities=13%  Similarity=0.093  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCeEe
Q psy2348          24 TYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN-GLASI   81 (131)
Q Consensus        24 ~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~-~IevI   81 (131)
                      ..+.+.++.++++|+.++.+.+.....+    .. ...|.++++++.+.++++ ++.+.
T Consensus        10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~i~   63 (279)
T cd00019          10 FGLENALKRAKEIGFDTVAMFLGNPRSW----LS-RPLKKERAEKFKAIAEEGPSICLS   63 (279)
T ss_pred             ccHHHHHHHHHHcCCCEEEEEcCCCCcc----CC-CCCCHHHHHHHHHHHHHcCCCcEE
Confidence            4467788888888888877765432211    11 234777777777777777 55554

Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=82.23  E-value=5.5  Score=31.68  Aligned_cols=60  Identities=15%  Similarity=0.061  Sum_probs=39.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348          17 KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI   81 (131)
Q Consensus        17 ~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI   81 (131)
                      .+.-+.++.|++.++....-+...-.+.+..  |+   -+.|..+|.+++++|++.|+++++-||
T Consensus       126 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~--p~---nPtG~~~~~~~l~~l~~~~~~~~~~ii  185 (363)
T PF00155_consen  126 NDFHLDPEALEEALDELPSKGPRPKAVLICN--PN---NPTGSVLSLEELRELAELAREYNIIII  185 (363)
T ss_dssp             TTTEETHHHHHHHHHTSHTTTETEEEEEEES--SB---TTTTBB--HHHHHHHHHHHHHTTSEEE
T ss_pred             ccccccccccccccccccccccccceeeecc--cc---cccccccccccccchhhhhccccccee
Confidence            4667778888877777665554222233332  22   234568999999999999999999988

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=81.93  E-value=2  Score=29.77  Aligned_cols=53  Identities=23%  Similarity=0.238  Sum_probs=37.4

Q ss_pred             EeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe-e
Q psy2348          13 HLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI-P   82 (131)
Q Consensus        13 mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI-P   82 (131)
                      -+|+.--+-+.+.+-++++.+...|...+++.-             |    ++-.+++++|++.||+++ |
T Consensus        55 ~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~-------------g----~~~~~~~~~a~~~gi~vigp  108 (116)
T PF13380_consen   55 PIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQP-------------G----AESEELIEAAREAGIRVIGP  108 (116)
T ss_dssp             T-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-T-------------T----S--HHHHHHHHHTT-EEEES
T ss_pred             CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEc-------------c----hHHHHHHHHHHHcCCEEEeC
Confidence            456666667788899999999999999988832             1    455789999999999999 6

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases

Probab=81.85  E-value=17  Score=28.89  Aligned_cols=66  Identities=12%  Similarity=0.049  Sum_probs=46.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcchHHHHhc
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYSDMDFVLK   95 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~GH~~~~L~   95 (131)
                      -...+.++++++.+...|++++.+        -|.......+|.||-+++++.+.+.   .+.||.-+-.  -+...++
T Consensus        17 ~iD~~~l~~l~~~l~~~Gv~gi~v--------~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~--~t~~~i~   85 (289)
T cd00951          17 SFDEDAYRAHVEWLLSYGAAALFA--------AGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY--GTATAIA   85 (289)
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEE--------CcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC--CHHHHHH
Confidence            467788999999999999999765        1212233478999999998877664   4778877743  3444443

The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.

>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3

Probab=81.73  E-value=5  Score=33.58  Aligned_cols=121  Identities=11%  Similarity=0.045  Sum_probs=67.4

Q ss_pred             CCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCC--CCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348           5 STFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLP--YSLGFDNTNPFRETEIFIILAAAESNGLASIP   82 (131)
Q Consensus         5 P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p--~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP   82 (131)
                      |+++. |+++ ++-...+-+.++++++.+...++--=.+.+++.+-  +...--+...+-  +.+++++..+++|+.+++
T Consensus        26 P~wal-G~~~-~~~~~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~f~~d~~~FP--d~~~~~~~l~~~G~~~~~  101 (441)
T PF01055_consen   26 PRWAL-GFWQ-SRWGYYNQDEVREVIDRYRSNGIPLDVIWIDDDYQDGYGDFTWDPERFP--DPKQMIDELHDQGIKVVL  101 (441)
T ss_dssp             -GGGG-SEEE-EESTBTSHHHHHHHHHHHHHTT--EEEEEE-GGGSBTTBTT-B-TTTTT--THHHHHHHHHHTT-EEEE
T ss_pred             chhhh-ceEe-ecCcCCCHHHHHHHHHHHHHcCCCccceecccccccccccccccccccc--chHHHHHhHhhCCcEEEE
Confidence            55555 8888 44455679999999999999998543333433221  111011222332  889999999999999987


Q ss_pred             ccCCcchHHHHhccccccccc--------c---------cCCCCceecCCChhHHHHHHHHHhhh
Q psy2348          83 LVPLYSDMDFVLKVKEFAKMR--------Q---------NFNDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        83 ~i~~~GH~~~~L~~p~~~~l~--------e---------~~~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      -++-.=+...- .++.|.+..        .         ++.....++.+||++.+...+.++++
T Consensus       102 ~~~P~v~~~~~-~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~  165 (441)
T PF01055_consen  102 WVHPFVSNDSP-DYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKEL  165 (441)
T ss_dssp             EEESEEETTTT-B-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHH
T ss_pred             EeecccCCCCC-cchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHH
Confidence            66542222211 011111111        0         11123568899999999997777654

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....

>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac)

Probab=81.33  E-value=6  Score=31.22  Aligned_cols=67  Identities=13%  Similarity=0.145  Sum_probs=41.9

Q ss_pred             HHHHHHHcCCCEEEEEeec----------cCCCCCC--CC--------CCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348          29 ILPILAYTGATSLLIEWED----------TLPYSLG--FD--------NTNPFRETEIFIILAAAESNGLASIPLVPLYS   88 (131)
Q Consensus        29 ~i~~la~~g~n~~~l~~ed----------~~p~~~~--~~--------~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G   88 (131)
                      +|+..++-|++.+-+.+-.          ..+|...  +.        ..-.+|.++.++|.+||+++||..+=..--+.
T Consensus         1 lI~~A~~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~gi~f~stpfd~~   80 (241)
T PF03102_consen    1 LIDAAAEAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKELGIDFFSTPFDEE   80 (241)
T ss_dssp             HHHHHHHHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHTT-EEEEEE-SHH
T ss_pred             CHHHHHHhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHcCCEEEECCCCHH
Confidence            5788889999987665521          1233221  01        11259999999999999999999988777777


Q ss_pred             hHHHHhc
Q psy2348          89 DMDFVLK   95 (131)
Q Consensus        89 H~~~~L~   95 (131)
                      =.+++.+
T Consensus        81 s~d~l~~   87 (241)
T PF03102_consen   81 SVDFLEE   87 (241)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777644

It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=81.26  E-value=1.9  Score=34.43  Aligned_cols=86  Identities=16%  Similarity=0.222  Sum_probs=61.4

Q ss_pred             eeEEeecCCCCCCHHHHH------HHHHHHHHcCCCEEEEEeeccCCCCCC---C-------------------------
Q psy2348          10 VLVHLDLKGAPPSLTYLK------EILPILAYTGATSLLIEWEDTLPYSLG---F-------------------------   55 (131)
Q Consensus        10 Rg~mlD~~~~~~~~~~lk------~~i~~la~~g~n~~~l~~ed~~p~~~~---~-------------------------   55 (131)
                      .++..-++++-|+..-+.      ++.......|+..+-+=.|..| |.|.   +                         
T Consensus        46 ~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~-F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQI~~  124 (254)
T COG0134          46 PAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVLTDPKY-FQGSFEDLRAVRAAVDLPVLRKDFIIDPYQIYE  124 (254)
T ss_pred             ceEEEEeecCCCCCCcccccCCHHHHHHHHHHhCCeEEEEecCccc-cCCCHHHHHHHHHhcCCCeeeccCCCCHHHHHH
Confidence            445555666656554333      3455667788888877666544 4444   0                         


Q ss_pred             -CC--C-------CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348          56 -DN--T-------NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV   96 (131)
Q Consensus        56 -~~--~-------~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~   96 (131)
                       +.  .       ..++++++++++++|.++|++++=|+..--+++.+++.
T Consensus       125 Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~  175 (254)
T COG0134         125 ARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKL  175 (254)
T ss_pred             HHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhC
Confidence             01  1       26999999999999999999999999999999999873

>PLN02877 alpha-amylase/limit dextrinase

Probab=81.10  E-value=4.7  Score=37.94  Aligned_cols=27  Identities=22%  Similarity=0.274  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          63 ETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        63 ~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      ..|.|++|+-|.++||+||-.+ .+-|+
T Consensus       465 I~efk~mV~~lH~~GI~VImDV-VyNHt  491 (970)
T PLN02877        465 IIEFRKMVQALNRIGLRVVLDV-VYNHL  491 (970)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEE-CCccc
Confidence            4699999999999999999765 56676

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=81.10  E-value=5.9  Score=32.08  Aligned_cols=62  Identities=23%  Similarity=0.233  Sum_probs=38.4

Q ss_pred             eeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348          10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLY   87 (131)
Q Consensus        10 Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~   87 (131)
                      -.+|||   |-.+.+.+++-|    ..|++++++-=. ..||+        -..+.-|+++++|..+|+.|=-|+=..
T Consensus        77 V~lHLD---H~~~~e~i~~Ai----~~GftSVM~DgS-~l~~e--------eNi~~T~~vve~Ah~~gv~VEaElG~v  138 (283)
T PRK07998         77 VSLHLD---HGKTFEDVKQAV----RAGFTSVMIDGA-ALPFE--------ENIAFTKEAVDFAKSYGVPVEAELGAI  138 (283)
T ss_pred             EEEECc---CCCCHHHHHHHH----HcCCCEEEEeCC-CCCHH--------HHHHHHHHHHHHHHHcCCEEEEEeccC
Confidence            356777   445666666655    347877776111 01211        245678999999999999885555444

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=81.03  E-value=6.1  Score=31.40  Aligned_cols=53  Identities=19%  Similarity=0.172  Sum_probs=42.9

Q ss_pred             HHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348          31 PILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV   96 (131)
Q Consensus        31 ~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~   96 (131)
                      ..-..+|++.+.|-.             ..++.+++++++++|.+.|++++=|+-+.--++.+++.
T Consensus       118 ~ea~~~GADavLLI~-------------~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~  170 (247)
T PRK13957        118 REARAFGASAILLIV-------------RILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDC  170 (247)
T ss_pred             HHHHHcCCCEEEeEH-------------hhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhC
Confidence            334446666665522             47899999999999999999999999999999999874

>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family

Probab=80.98  E-value=3.6  Score=32.07  Aligned_cols=64  Identities=16%  Similarity=0.114  Sum_probs=45.2

Q ss_pred             CCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348           7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI   81 (131)
Q Consensus         7 f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI   81 (131)
                      |+.-|+++|....- ..+-+-++++...++.-+.+.+-.       +   -+.++|.+|+.++.+|+....+.|+
T Consensus       132 ~Ka~gik~e~~~~~-~~eki~~~lki~~~l~~kki~ifv-------N---l~~YLt~eei~el~~~i~~~~~~vl  195 (216)
T TIGR01866       132 IKALGIKFETQSDT-LLEKCLEILQIFKELTKKKLFIFI-------N---SGAFLTKDELAELQKFISYTKLTVL  195 (216)
T ss_pred             HHhcCeeeeeccCc-HHHHHHHHHHHHHHHhcCcEEEEE-------c---HHHhCCHHHHHHHHHHHHHhcccEE
Confidence            34557788875443 556666666666666655544422       2   2479999999999999999999887

CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.

>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT)

Probab=80.62  E-value=8.7  Score=26.70  Aligned_cols=52  Identities=29%  Similarity=0.279  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      .+.++++|+.|+..|+.++.+...+.+   .+++          ++++++|.++++   |.|.+|-+.
T Consensus        58 ~~~~~~~i~~L~~~~~agL~i~~~~~~---~~iP----------~~~i~~A~~~~l---Pli~ip~~~  109 (123)
T PF07905_consen   58 EEELREFIRELAEKGAAGLGIKTGRYL---DEIP----------EEIIELADELGL---PLIEIPWEV  109 (123)
T ss_pred             HHHHHHHHHHHHHCCCeEEEEeccCcc---ccCC----------HHHHHHHHHcCC---CEEEeCCCC
Confidence            346999999999999999998775322   2233          689999999997   444555433

PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.

>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]

Probab=80.51  E-value=7.8  Score=32.24  Aligned_cols=74  Identities=15%  Similarity=0.009  Sum_probs=50.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEE-eecc-CCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeecc--CCcch
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIE-WEDT-LPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLV--PLYSD   89 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~-~ed~-~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i--~~~GH   89 (131)
                      .-++.-|.+-+|.+..+|++.+.|- +-.. ..+-|+      --+..+=|.+|.+++++-|.+|||.||--+  +..|.
T Consensus        25 ~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~  104 (505)
T COG0366          25 GGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSD  104 (505)
T ss_pred             cccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCC
Confidence            3566677799999999999997651 1111 112222      112456799999999999999999999877  44444


Q ss_pred             HHHH
Q psy2348          90 MDFV   93 (131)
Q Consensus        90 ~~~~   93 (131)
                      ...+
T Consensus       105 ~~~~  108 (505)
T COG0366         105 EHPW  108 (505)
T ss_pred             ccHH
Confidence            4443

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]

Probab=80.28  E-value=2.8  Score=34.85  Aligned_cols=37  Identities=16%  Similarity=0.025  Sum_probs=33.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc
Q psy2348          59 NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK   95 (131)
Q Consensus        59 ~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~   95 (131)
                      .-+|.+|++++++||.++|..+.=.++++=|....-.
T Consensus        44 ~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~   80 (347)
T COG0826          44 LNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELET   80 (347)
T ss_pred             ccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhH
Confidence            3699999999999999999999999999988776654

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=80.14  E-value=17  Score=30.80  Aligned_cols=56  Identities=9%  Similarity=-0.084  Sum_probs=39.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI   81 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI   81 (131)
                      ++++.+++.+.....-|.+.-.+.+  +.|  . -+-|.-||++++++|++.|++++|-||
T Consensus       182 ~~~~~le~a~~~a~~~~~~vk~lll--~nP--~-NPtG~~~s~e~l~~l~~~~~~~~i~lI  237 (447)
T PLN02607        182 VTPQALEAAYQEAEAANIRVRGVLI--TNP--S-NPLGATVQRSVLEDILDFVVRKNIHLV  237 (447)
T ss_pred             CCHHHHHHHHHHHHHhCCCeeEEEE--eCC--C-CCcCcccCHHHHHHHHHHHHHCCCEEE
Confidence            6888888887765555554322333  222  1 234568999999999999999999987

>KOG4175|consensus

Probab=80.03  E-value=6  Score=31.19  Aligned_cols=25  Identities=24%  Similarity=0.401  Sum_probs=20.6

Q ss_pred             CCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          61 FRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        61 YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      +-.||...+-.+|++.||++||++-
T Consensus       132 lPpEEa~~~Rne~~k~gislvpLva  156 (268)
T KOG4175|consen  132 LPPEEAETLRNEARKHGISLVPLVA  156 (268)
T ss_pred             CChHHHHHHHHHHHhcCceEEEeeC
Confidence            5578888888899999999998873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	131
2epl_X	627	N-acetyl-beta-D-glucosaminidase; glycoside hydrola	3e-11

>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A Length = 627

 Score = 58.5 bits (141), Expect = 3e-11
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 11/128 (8%)

Query: 7   FKEVLVHLDL-KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS----LGFDNTNPF 61
           ++++    D  + A  +L+  K+++ +LA  G ++  +  EDT         G+     +
Sbjct: 84  YEDLAYMADCSRNAVLNLSSAKKMIEVLALMGYSTFELYMEDTYEIENQPYFGYFR-GRY 142

Query: 62  RETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV--KEFAKMRQNFNDTRFICPNARSS 119
              E+  I   A    ++ +P +   + +   +K   KE  ++R   +    +       
Sbjct: 143 TVAELQEIEDYAADFDMSFVPCIQTLAHLSAFVKWGIKEVQELRDVED---ILLIGEEKV 199

Query: 120 LDLVFKMI 127
            DL+  M 
Sbjct: 200 YDLIEGMF 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
2epl_X	627	N-acetyl-beta-D-glucosaminidase; glycoside hydrola	100.0
3gh5_A	525	HEX1, beta-hexosaminidase; beta-N-acetylhexosamini	100.0
3rcn_A	543	Beta-N-acetylhexosaminidase; structural genomics,	100.0
1now_A	507	Beta-hexosaminidase beta chain; (beta/alpha)8-barr	100.0
1jak_A	512	Beta-N-acetylhexosaminidase; glycoside hydrolase,	100.0
1yht_A	367	DSPB; beta barrel, hydrolase; 2.00A {Aggregatibact	100.0
2gjx_A	507	Beta-hexosaminidase alpha chain; beta-hexosaminida	100.0
3ozo_A	572	N-acetylglucosaminidase; beta-N-acetyl-D-hexosamin	100.0
2yl6_A	434	Beta-N-acetylhexosaminidase; peptidoglycan-anchor,	100.0
2yl5_A	442	Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Str	100.0
1c7s_A	858	Beta-N-acetylhexosaminidase; glycosyl hydrolase, c	100.0
2v5c_A	594	O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrol	99.86
2v5d_A	737	O-GLCNACASE NAGJ; family 32 carbohydrate binding m	99.84
2cho_A	716	Glucosaminidase, hexosaminiase; O-GLCNACASE, hydro	99.82
3tty_A	675	Beta-GAL, beta-galactosidase; TIM barrel, glycosid	97.35
1kwg_A	645	Beta-galactosidase; TIM barrel, glycoside hydrolas	97.21
2d73_A	738	Alpha-glucosidase SUSB; glycoside hydrolase family	96.68
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	96.19
2whl_A	294	Beta-mannanase, baman5; glycoside hydrolase, hydro	96.05
3pzg_A	383	Mannan endo-1,4-beta-mannosidase. glycosyl hydrol	96.02
3dhu_A	449	Alpha-amylase; structural genomics, hydrolase, gly	95.85
2xn2_A	732	Alpha-galactosidase; hydrolase, glycosidase; HET:	95.76
1rh9_A	373	Endo-beta-mannanase; endo-beta-mannase, retaining,	95.74
3nco_A	320	Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1	95.57
3vup_A	351	Beta-1,4-mannanase; TIM barrel, digestive fluid, H	95.5
1uuq_A	440	Mannosyl-oligosaccharide glucosidase; hydrolase, m	95.44
1fob_A	334	Beta-1,4-galactanase; B/A barrel, glycosyl hydrola	95.44
3aof_A	317	Endoglucanase; glycosyl hydrolase family 5, cellul	95.39
3a24_A	641	Alpha-galactosidase; glycoside hydrolase family 97	95.36
1ht6_A	405	AMY1, alpha-amylase isozyme 1; barley, beta-alpha-	95.26
1lwj_A	441	4-alpha-glucanotransferase; alpha-amylase family,	95.25
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	95.14
3ayr_A	376	Endoglucanase; TIM barrel, hydrolase, carbohydrate	95.06
4aie_A	549	Glucan 1,6-alpha-glucosidase; hydrolase, glycoside	95.03
2yfo_A	720	Alpha-galactosidase-sucrose kinase agask; hydrolas	95.03
1vem_A	516	Beta-amylase; beta-alpha-barrels, optimum PH, hydr	94.99
1wky_A	464	Endo-beta-1,4-mannanase; TIM barrel, catalytic dom	94.99
3icg_A	515	Endoglucanase D; cellulase, xylanase, carbohydrate	94.92
4gqr_A	496	Pancreatic alpha-amylase; glycosyl hydrolase, diab	94.8
3ndz_A	345	Endoglucanase D; cellotriose, xylanase, carbohydra	94.77
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	94.63
2aaa_A	484	Alpha-amylase; glycosidase; 2.10A {Aspergillus nig	94.59
3mi6_A	745	Alpha-galactosidase; NESG, structural genomics, PS	94.56
2z1k_A	475	(NEO)pullulanase; hydrolase, structural genomics,	94.54
1jae_A	471	Alpha-amylase; glycosidase, carbohydrate metabolis	94.52
2guy_A	478	Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase;	94.48
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	94.47
2c0h_A	353	Mannan endo-1,4-beta-mannosidase; hydrolase, signa	94.35
3zss_A	695	Putative glucanohydrolase PEP1A; alpha-glucan bios	94.31
1ud2_A	480	Amylase, alpha-amylase; calcium-free, alkaline, hy	94.17
1ece_A	358	Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.	94.17
1wpc_A	485	Glucan 1,4-alpha-maltohexaosidase; maltohexaose-pr	94.16
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	94.15
3bh4_A	483	Alpha-amylase; calcium, carbohydrate metabolism, g	94.15
1ceo_A	343	Cellulase CELC; glycosyl hydrolase, family A/5 of	94.14
3qr3_A	340	Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A	94.03
2jep_A	395	Xyloglucanase; family 5, plant cell WALL, hydrolas	93.95
1bqc_A	302	Protein (beta-mannanase); glycosyl hydrolase, fami	93.88
1vjz_A	341	Endoglucanase; TM1752, structural genomics, JCSG,	93.85
2wc7_A	488	Alpha amylase, catalytic region; CD/PUL-hydrolyzin	93.81
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	93.78
1zja_A	557	Trehalulose synthase; sucrose isomerase, alpha-amy	93.74
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	93.67
3aj7_A	589	Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydro	93.65
3l55_A	353	B-1,4-endoglucanase/cellulase; putative beta-1,4-e	93.63
3edf_A	601	FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c	93.56
1h1n_A	305	Endo type cellulase ENGI; hydrolase, glycosyl hydr	93.55
1m53_A	570	Isomaltulose synthase; klebsiella SP. LX3, sucrose	93.54
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	93.51
3jug_A	345	Beta-mannanase; TIM-barrel, glycosidase, hydrolase	93.48
3civ_A	343	Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.	93.47
1hjs_A	332	Beta-1,4-galactanase; 4-galactanases, family 53 gl	93.47
4fnq_A	729	Alpha-galactosidase AGAB; glycoside hydrolase, hyd	93.46
1hvx_A	515	Alpha-amylase; hydrolase, glycosyltransferase, the	93.4
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	93.33
1qnr_A	344	Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt	93.25
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	93.22
2ze0_A	555	Alpha-glucosidase; TIM barrel, glucoside hydrolase	93.15
1g5a_A	628	Amylosucrase; glycosyltransferase, glycoside hydro	93.08
3czg_A	644	Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC;	92.98
2zic_A	543	Dextran glucosidase; TIM barrel, (beta/alpha)8-bar	92.94
1gjw_A	637	Maltodextrin glycosyltransferase; alpha-amylase, m	92.91
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	92.9
1uok_A	558	Oligo-1,6-glucosidase; sugar degradation, hydrolas	92.86
1wza_A	488	Alpha-amylase A; hydrolase, halophilic, thermophil	92.84
1g94_A	448	Alpha-amylase; beta-alpha-8-barrel, 3 domain struc	92.8
2dh2_A	424	4F2 cell-surface antigen heavy chain; TIM-barrel,	92.66
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	92.53
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	92.51
1mxg_A	435	Alpha amylase; hyperthermostable, family 13 glycos	92.46
1ua7_A	422	Alpha-amylase; beta-alpha-barrels, acarbose, greek	92.25
1h4p_A	408	Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca	92.15
3n9k_A	399	Glucan 1,3-beta-glucosidase; aromatic entranceway/	92.12
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	92.05
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	91.9
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	91.76
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	91.74
3bc9_A	599	AMYB, alpha amylase, catalytic region; acarbose, t	91.63
3k8k_A	669	Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, bet	91.48
2y8k_A	491	Arabinoxylanase, carbohydrate binding family 6; hy	91.44
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	91.4
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	91.36
3u7v_A	552	Beta-galactosidase; structural genomics, PSI-biolo	91.32
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	91.23
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	91.17
3ucq_A	655	Amylosucrase; thermostability, amylose synthesis,	91.09
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	91.01
1edg_A	380	Endoglucanase A; family A, cellulases, xylanases,	90.91
1tvn_A	293	Cellulase, endoglucanase G; glycoside hydrolase, C	90.53
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	90.49
1ur4_A	399	Galactanase; hydrolase, beta-1, glycoside hydrolas	90.45
2osx_A	481	Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel	90.14
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	90.0
1g01_A	364	Endoglucanase; alpha/beta barrel, TIM barrel, hydr	89.92
3aie_A	844	Glucosyltransferase-SI; beta-alpha-barrels; HET: M	89.9
3qho_A	458	Endoglucanase, 458AA long hypothetical endo-1,4-be	89.87
2xsa_A	447	Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION,	89.82
1x7f_A	385	Outer surface protein; structural genomics, unknow	89.68
2j78_A	468	Beta-glucosidase A; family 1, hydrolase, inhibitor	89.65
1vff_A	423	Beta-glucosidase; glycosyl hydrolase, membrane-bou	89.63
1egz_A	291	Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CL	89.47
7a3h_A	303	Endoglucanase; hydrolase, cellulose degradation, g	89.45
4awe_A	387	Endo-beta-D-1,4-mannanase; hydrolase, endo-mannana	89.44
1iv8_A	720	Maltooligosyl trehalose synthase; beta alpha barre	89.44
2ya1_A	1014	Putative alkaline amylopullulanase; hydrolase, gly	89.25
2p0o_A	372	Hypothetical protein DUF871; structural genomics,	89.03
1vli_A	385	Spore coat polysaccharide biosynthesis protein SP;	88.92
3pzt_A	327	Endoglucanase; alpha/beta barrel, glycosyl hydrola	88.73
1qtw_A	285	Endonuclease IV; DNA repair enzyme, TIM barrel, tr	88.66
3aam_A	270	Endonuclease IV, endoiv; DNA repair, base excision	88.64
4hz8_A	444	Beta-glucosidase; BGLB,BGL, hydrolase, glycosid ba	88.18
1qwg_A	251	PSL synthase;, (2R)-phospho-3-sulfolactate synthas	88.11
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	88.1
3d3a_A	612	Beta-galactosidase; protein structure initiative I	87.87
3ttq_A	1108	Dextransucrase; (beta/alpha)8 barrel, transferase;	87.77
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	87.76
2x7v_A	287	Probable endonuclease 4; DNA repair protein, metal	87.7
4e8d_A	595	Glycosyl hydrolase, family 35; TIM barrel, beta-pr	87.58
3fj0_A	465	Beta-glucosidase; BGLB,BGL, hydrolase, glycosidase	87.03
3gnh_A	403	L-lysine, L-arginine carboxypeptidase CC2672; N-me	86.74
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	86.24
3hje_A	704	704AA long hypothetical glycosyltransferase; treha	86.14
2w61_A	555	GAS2P, glycolipid-anchored surface protein 2; glyc	85.71
3cmg_A	667	Putative beta-galactosidase; structural genomics,	85.51
3klk_A	1039	Glucansucrase; native form, open conformation, mul	85.5
4hty_A	359	Cellulase; (alpha/beta)8 barrel, family 5 endogluc	85.26
3lpf_A	605	Beta-glucuronidase; alpha/beta barrel, sugar-bindi	85.23
3p6l_A	262	Sugar phosphate isomerase/epimerase; TIM barrel, s	84.95
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	84.94
1uhv_A	500	Beta-xylosidase; family 39 glycoside hydrolase, xy	84.83
1yq2_A	1024	Beta-galactosidase; glycosyl hydrolase family 2, T	84.56
3og2_A	1003	Beta-galactosidase; TIM barrel domain, glycoside h	84.45
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	84.3
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	83.64
3c8f_A	245	Pyruvate formate-lyase 1-activating enzyme; adoMet	83.64
3aal_A	303	Probable endonuclease 4; endoiv, DNA repair, base	83.6
1tg7_A	971	Beta-galactosidase; TIM barrel domain, glycoside h	83.18
3ahx_A	453	Beta-glucosidase A; cellulases, glycosyl hydrolase	83.15
1zy9_A	564	Alpha-galactosidase; TM1192, struc genomics, joint	83.11
3lmz_A	257	Putative sugar isomerase; structural genomics, joi	82.74
2qw5_A	335	Xylose isomerase-like TIM barrel; putative sugar p	82.57
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	82.4
1vs1_A	276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	82.38
3kws_A	287	Putative sugar isomerase; structural genomics, joi	82.37
3f5l_A	481	Beta-glucosidase; beta-alpha-barrels, glycosidase,	82.32
3ta9_A	458	Glycoside hydrolase family 1; TIM barrel, glucosid	82.21
1w91_A	503	Beta-xylosidase; MAD, seMet, tetramer, hydrolase;	81.99
3s5u_A	220	Putative uncharacterized protein; crispr, crispr a	81.87
3thd_A	654	Beta-galactosidase; TIM-barrel domain, glycosyl hy	81.66
1qox_A	449	Beta-glucosidase; hydrolase, cellulose degradation	81.64
2j6v_A	301	UV endonuclease, UVDE; plasmid, TIM barrel, DNA re	81.39
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	81.07
2o9p_A	454	Beta-glucosidase B; family 1 glycoside hydrolase;	81.03
3can_A	182	Pyruvate-formate lyase-activating enzyme; structur	80.44
3gnp_A	488	OS03G0212800 protein; beta-alpha barrel, glycosida	80.38
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	80.37
3feq_A	423	Putative amidohydrolase; unknown source, sargasso	80.26

>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A

Probab=100.00  E-value=2.4e-39  Score=280.18  Aligned_cols=128  Identities=16%  Similarity=0.192  Sum_probs=118.5

Q ss_pred             CCCCCCCCceeEEeecCCC-CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC---CCCCCCCCHHHHHHHHHHHHHc
Q psy2348           1 MVTPSTFKEVLVHLDLKGA-PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG---FDNTNPFRETEIFIILAAAESN   76 (131)
Q Consensus         1 ~~D~P~f~~Rg~mlD~~~~-~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~---~~~~~~YT~eeikeiv~yA~~~   76 (131)
                      ++|+|+|++||+|||++|| |+++++||++||.||.+|+|++.+|++|+|+++++   ...+++||++|+|+|++||++|
T Consensus        78 I~D~P~f~~RG~mlD~sR~~f~~~~~ik~~id~ma~~KlN~lh~Hl~D~~ei~~~P~l~~~~~~YT~~di~eiv~yA~~r  157 (627)
T 2epl_X           78 IEEEAAYEDLAYMADCSRNAVLNLSSAKKMIEVLALMGYSTFELYMEDTYEIENQPYFGYFRGRYTVAELQEIEDYAADF  157 (627)
T ss_dssp             EEECCSCSEEEEEEECSSSCCBCHHHHHHHHHHHHHHTCCEEEEECSSCBCCTTCTTTTTTTTCBCHHHHHHHHHHHHHT
T ss_pred             EEeCCCCCccceEEecCCCCCCCHHHHHHHHHHHHHcCCcEEEEEeecccccCCCcccCccCCCcCHHHHHHHHHHHHHc
Confidence            4799999999999999999 99999999999999999999999999999877665   3356899999999999999999


Q ss_pred             CCeEeeccCCcchHHHHhcc--cccccccccCCCCceecCCChhHHHHHHHHHhhhC
Q psy2348          77 GLASIPLVPLYSDMDFVLKV--KEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRLH  131 (131)
Q Consensus        77 ~IevIP~i~~~GH~~~~L~~--p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~ev~  131 (131)
                      ||+||||||||||+.+++++  +.|++|++.   +++|||++|+|++|+++|++||+
T Consensus       158 gI~VIPEID~PGH~~a~l~~g~~~yp~L~~~---~~~l~~~~~~t~~fl~~v~~Ev~  211 (627)
T 2epl_X          158 DMSFVPCIQTLAHLSAFVKWGIKEVQELRDV---EDILLIGEEKVYDLIEGMFQTMA  211 (627)
T ss_dssp             TCEEEEECCSSSCCHHHHTCCSHHHHTTEEE---TTEECTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeeccCCcHHHHHhhhhhhcccccCC---CCccCCCChhHHHHHHHHHHHHH
Confidence            99999999999999999998  678888773   47999999999999999999984

>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*

Probab=100.00  E-value=1.2e-38  Score=271.13  Aligned_cols=131  Identities=11%  Similarity=0.126  Sum_probs=112.6

Q ss_pred             CCCCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC---------C--------CCCCCCCH
Q psy2348           1 MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG---------F--------DNTNPFRE   63 (131)
Q Consensus         1 ~~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~---------~--------~~~~~YT~   63 (131)
                      ++|+|+|++||+|||++|||+++++||++||.||.+|+|.+.+|++|...|+-+         .        ..+++||+
T Consensus       176 I~D~Prf~~RG~mLDvsR~f~~~~~ik~~id~mA~~KlN~lH~HltDdqgwriei~~~P~Lt~~Ga~~~~~~~~~g~YT~  255 (525)
T 3gh5_A          176 ISDKPEYEYRGLMLDVARHFFTVDEVKRQIDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEIGSKGQVGGGPGGYYTQ  255 (525)
T ss_dssp             EEECCSCSEEEEEEECSSSCCCHHHHHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCH
T ss_pred             EeecCCcceeccccCCCCCCCCHHHHHHHHHHHHHcCCcEEEEEeccCCccccccccchhhhhccCccccCCCCCCCcCH
Confidence            469999999999999999999999999999999999999999999998544322         1        13679999


Q ss_pred             HHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-ccccccccc-------cCCCCceecCCChhHHHHHHHHHhhhC
Q psy2348          64 TEIFIILAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKMRQ-------NFNDTRFICPNARSSLDLVFKMIGRLH  131 (131)
Q Consensus        64 eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~e-------~~~~~~~lcp~~~~t~~f~~~ll~ev~  131 (131)
                      +|+|+|++||++|||+||||||||||+.++|+ ||++.+...       +....++|||++|+|++|+++|++||.
T Consensus       256 ~di~eIv~YA~~rgI~VIPEID~PGH~~a~l~~yp~L~~~~~~~~~~~~~~~~~~~l~~~~~~ty~fl~~vl~Ev~  331 (525)
T 3gh5_A          256 EQFKDIVSYAAERYIEVIPEIDMPGHTNAALASYGELNPDGKRKAMRTDTAVGYSTLMPRAEITYQFVEDVISELA  331 (525)
T ss_dssp             HHHHHHHHHHHTTTCEEEEECCCSSSCHHHHHHCGGGSTTSCCCCCCCSCCCSCCCCCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCEEEEEecccchHHHHHHhChhhccCCCCCcccccCCCCCcccCCCChhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999997 666654321       112346899999999999999999973

>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}

Probab=100.00  E-value=1.5e-38  Score=271.52  Aligned_cols=130  Identities=11%  Similarity=0.071  Sum_probs=111.1

Q ss_pred             CCCCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccC--CCC--CC----------------------
Q psy2348           1 MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTL--PYS--LG----------------------   54 (131)
Q Consensus         1 ~~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~--p~~--~~----------------------   54 (131)
                      ++|+|+|++||+|||++|||+++++||++||.||.+|+|.+.+|+.|..  ++.  ++                      
T Consensus       132 I~D~Prf~~RG~mLDvsRhf~~~~~ik~~ID~MA~~KlN~lH~HltDdqgwriei~~yP~Lt~~Ga~r~~t~~g~~~~~~  211 (543)
T 3rcn_A          132 VEDKPRFGYRGTMLDVARHFMPKDNVLRFIEVMAMHKLNVLHLHLTDDQGWRMQINRYPKLTETGAWRRESSLGSWRAGV  211 (543)
T ss_dssp             EEECCSCSEEEEEEETTTSCCCHHHHHHHHHHHHHTTCCEEEEECEETTEECBCCSSCTHHHHTTTEESCCBSSCGGGCC
T ss_pred             EEecCCCCccccccccCCCccCHHHHHHHHHHHHHcCCcEEEeecccccCcchhcccchhhhhhcccccccccccccccc
Confidence            4799999999999999999999999999999999999999999998763  221  11                      


Q ss_pred             ---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-cccccccc-----------ccCCCCceecCCChhH
Q psy2348          55 ---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKMR-----------QNFNDTRFICPNARSS  119 (131)
Q Consensus        55 ---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~-----------e~~~~~~~lcp~~~~t  119 (131)
                         .+++|+||++|||+|++||++|||+||||||||||+.++++ +|++.+..           ..+..+++||| +|+|
T Consensus       212 ~~~~~~~g~YT~~di~eIv~YA~~rgI~VIPEID~PGH~~a~l~aypeL~~~~~~d~~~~~~~~~~g~~~~~L~p-~~~t  290 (543)
T 3rcn_A          212 FDGRPHGGFYTQDDLREIVAFAADRHITVIPEIDVPGHSQAAIAAYPELGAGPADGSSPVEVWTRWGINETVLEV-SETS  290 (543)
T ss_dssp             BCCCCEECCBCHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHCGGGSCCC----CCCCCCCSCSCCSCCCCC-SHHH
T ss_pred             ccCCccCCCcCHHHHHHHHHHHHHcCCEEeeeeccchhHHHHHHhChhhccCccccCcccccccccCcCCCccCC-CHHH
Confidence               11267999999999999999999999999999999999998 77776531           01234578999 9999


Q ss_pred             HHHHHHHHhhhC
Q psy2348         120 LDLVFKMIGRLH  131 (131)
Q Consensus       120 ~~f~~~ll~ev~  131 (131)
                      ++|+++|++||.
T Consensus       291 y~fl~~v~~Ev~  302 (543)
T 3rcn_A          291 LEFYRNVLDEVV  302 (543)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999973

>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*

Probab=100.00  E-value=1.4e-38  Score=269.88  Aligned_cols=131  Identities=11%  Similarity=0.174  Sum_probs=113.1

Q ss_pred             CCCCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecc--CCCCCC----------CCCCCCCCHHHHHH
Q psy2348           1 MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYSLG----------FDNTNPFRETEIFI   68 (131)
Q Consensus         1 ~~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~--~p~~~~----------~~~~~~YT~eeike   68 (131)
                      ++|+|+|++||+|||++|||+++++||++||.||.+|+|.+.+|++|.  ||+...          .+.+++||++|+|+
T Consensus       145 I~D~P~f~~RG~mlD~aR~f~~~~~ik~~id~ma~~KlN~lh~HltDdq~wr~e~~~~P~Lt~~Ga~~~~~~YT~~di~e  224 (507)
T 1now_A          145 IIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRM  224 (507)
T ss_dssp             EEECCSCSEEEEEEESSSSCCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCBCCSSCHHHHHHHSSSTTSCBCHHHHHH
T ss_pred             EEecCccceeeeeeccCCCCCCHHHHHHHHHHHHHhCCcEEEEeeccCccceeeccchhhhhcccCcCCCCCCCHHHHHH
Confidence            479999999999999999999999999999999999999999999987  565432          33478999999999


Q ss_pred             HHHHHHHcCCeEeeccCCcchHHHHhc-cccccccccc----CCCCceecCCChhHHHHHHHHHhhhC
Q psy2348          69 ILAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKMRQN----FNDTRFICPNARSSLDLVFKMIGRLH  131 (131)
Q Consensus        69 iv~yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~e~----~~~~~~lcp~~~~t~~f~~~ll~ev~  131 (131)
                      |++||++|||+||||||||||+.++++ +|++.+....    ....++|||++|+|++|+++|++||.
T Consensus       225 iv~yA~~rgI~VIPEID~PGH~~a~~~~~p~L~~~~~~~~~~~~~~~~l~p~~~~t~~fl~~v~~Ev~  292 (507)
T 1now_A          225 VIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFLTTFFKEIS  292 (507)
T ss_dssp             HHHHHHHTTCEEEEEEEESSSCTTHHHHSTTCEEECCC----CCSEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCEEEEccCCchhHHHHHHhCHHhcccCCCCCCcCCCCcccCCCcHHHHHHHHHHHHHHH
Confidence            999999999999999999999999996 6776432111    11235899999999999999999973

>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*

Probab=100.00  E-value=4.2e-38  Score=267.18  Aligned_cols=131  Identities=15%  Similarity=0.137  Sum_probs=112.5

Q ss_pred             CCCCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC------------C-----CCCCCCCH
Q psy2348           1 MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG------------F-----DNTNPFRE   63 (131)
Q Consensus         1 ~~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~------------~-----~~~~~YT~   63 (131)
                      ++|+|+|++||+|||++|||+++++||++||.||.+|+|.+.+|++|...|+-+            .     ..+++||+
T Consensus       151 I~D~Prf~~RG~mLD~aR~f~~~~~ik~~id~ma~~KlN~lh~HltDdq~wriei~~~P~Lt~~ga~~~~~~~~~g~YT~  230 (512)
T 1jak_A          151 IEDTPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTK  230 (512)
T ss_dssp             EEECCSCSEEEEEEECSSSCCCHHHHHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCH
T ss_pred             EeecCCCCccceeeccCCCCCCHHHHHHHHHHHHHcCCcEEEEEeccCCCceehhhhhHHHHhhcCccccCCCCCCCCCH
Confidence            469999999999999999999999999999999999999999999997533211            1     12579999


Q ss_pred             HHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-cccccccccc-------CCCCceecCCChhHHHHHHHHHhhhC
Q psy2348          64 TEIFIILAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKMRQN-------FNDTRFICPNARSSLDLVFKMIGRLH  131 (131)
Q Consensus        64 eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~e~-------~~~~~~lcp~~~~t~~f~~~ll~ev~  131 (131)
                      +|+|+|++||++|||+||||||||||+.++++ +|++.+....       +...++|||++|+|++|+++|++||.
T Consensus       231 ~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~aypeL~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~Ev~  306 (512)
T 1jak_A          231 AEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELA  306 (512)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHCGGGSTTSCCCCCCCSCCCSCCCCCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCEEEEccCCCchHHHHHHhCHHhcCcCCCCccccccCcCCcccCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999997 7776553211       12357899999999999999999973

>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6

Probab=100.00  E-value=2.4e-38  Score=259.21  Aligned_cols=129  Identities=16%  Similarity=0.170  Sum_probs=105.1

Q ss_pred             CCCCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecc--CCCCCC----C----------------CCC
Q psy2348           1 MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYSLG----F----------------DNT   58 (131)
Q Consensus         1 ~~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~--~p~~~~----~----------------~~~   58 (131)
                      +.|+|| ++||+|||++|||+++++||++||.||.+|+|.+.+|++|.  ||+...    +                .++
T Consensus        11 I~D~Pr-~~RG~mLDvaR~f~~~~~ik~~id~mA~~KlN~lH~HltDdq~~rle~~~~~~~~~~~~~~~~g~~~~~~~~~   89 (367)
T 1yht_A           11 PQKTST-KQTGLMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKDGIYINPYTGK   89 (367)
T ss_dssp             -----C-CEEEEEEECSSSCCCHHHHHHHHHHHHHTTCCEEEEECBSSSCBCBCBTTTTBCGGGSEECTTSCEECTTTCC
T ss_pred             ecccCC-CceeEEEecCCCCCCHHHHHHHHHHHHHcCCcEEEEEEEcCCCceeeecchhhhhhhhccccCCCcCCCCCCC
Confidence            579999 99999999999999999999999999999999999999984  666421    1                123


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc-cc-----c-ccccccCCCCceecCCChhHHHHHHHHHhhhC
Q psy2348          59 NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV-KE-----F-AKMRQNFNDTRFICPNARSSLDLVFKMIGRLH  131 (131)
Q Consensus        59 ~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~-p~-----~-~~l~e~~~~~~~lcp~~~~t~~f~~~ll~ev~  131 (131)
                      |+||++|||+|++||++|||+||||||||||+.+++++ ++     | ..+.+ +...++|||++|+|++|+++|++||.
T Consensus        90 g~YT~~di~eiv~YA~~rgI~VIPEID~PGH~~a~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~t~~fl~~v~~Ev~  168 (367)
T 1yht_A           90 PFLSYRQLDDIKAYAKAKGIELIPELDSPNHMTAIFKLVQKDRGVKYLQGLKS-RQVDDEIDITNADSITFMQSLMSEVI  168 (367)
T ss_dssp             EEBCHHHHHHHHHHHHHTTCEEEEEEEESSSCHHHHHHHHHHHCHHHHHHHBC-SSCTTSBCTTCHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHcCCEEEEeccchHHHHHHHHhcccccCcccccccCC-CCCCceeCCCCHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999984 22     2 11222 22357899999999999999999973

>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*

Probab=100.00  E-value=6.1e-38  Score=265.92  Aligned_cols=131  Identities=11%  Similarity=0.099  Sum_probs=111.7

Q ss_pred             CCCCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecc--CCCCCC----------CC-CCCCCCHHHHH
Q psy2348           1 MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYSLG----------FD-NTNPFRETEIF   67 (131)
Q Consensus         1 ~~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~--~p~~~~----------~~-~~~~YT~eeik   67 (131)
                      ++|+|+|++||+|||++|||+++++||++||.||.+|+|.+.+|+.|.  ||+...          .+ .+++||++|+|
T Consensus       139 I~D~P~f~~RG~mlD~aR~f~~~~~ik~~id~mA~~KlN~lh~HltDdq~wr~ei~~~P~Lt~~Ga~~~~~~~YT~~di~  218 (507)
T 2gjx_A          139 IEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVK  218 (507)
T ss_dssp             EEECCSCSEEEEEEETTTSCCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCBCCSSCTHHHHHHSSCTTTSCBCHHHHH
T ss_pred             EeecCCcceeeeeeccCCCCCCHHHHHHHHHHHHHhCCceEEEEEecccCeeeeccccchhhhccccCCCCCCcCHHHHH
Confidence            479999999999999999999999999999999999999999999885  565432          22 26799999999


Q ss_pred             HHHHHHHHcCCeEeeccCCcchHHHHhc-ccccccccccCC----CCceecCCChhHHHHHHHHHhhhC
Q psy2348          68 IILAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKMRQNFN----DTRFICPNARSSLDLVFKMIGRLH  131 (131)
Q Consensus        68 eiv~yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~e~~~----~~~~lcp~~~~t~~f~~~ll~ev~  131 (131)
                      +|++||++|||+||||||||||+.++++ +|++........    ..++|||++|+|++|+++|++||.
T Consensus       219 eiv~yA~~rgI~VIPEID~PGH~~a~l~~~p~L~~~~~~~~~~~~~~~~l~p~~~~t~~fl~~v~~Ev~  287 (507)
T 2gjx_A          219 EVIEYARLRGIRVLAEFDTPGHTLSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEFMSTFFLEVS  287 (507)
T ss_dssp             HHHHHHHHTTCEEEEECCCSSSCTTTTTTSTTCEEEEESSSSEEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCEEEECCCCcchHHHHHHhCHhhcccCCCCCccCCCCCccCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999997 566542221111    135799999999999999999973

>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase, hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A* 3vtr_A*

Probab=100.00  E-value=1.5e-37  Score=266.65  Aligned_cols=131  Identities=8%  Similarity=0.085  Sum_probs=112.9

Q ss_pred             CCCCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecc--CCCCCC----------CCCCCCCCHHHHHH
Q psy2348           1 MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYSLG----------FDNTNPFRETEIFI   68 (131)
Q Consensus         1 ~~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~--~p~~~~----------~~~~~~YT~eeike   68 (131)
                      ++|+|+|++||+|||++|||+++++||++||.||.+|+|.+.+|++|.  ||+...          .+.+++||++|||+
T Consensus       181 I~D~Prf~~RG~mLDvsR~f~~~~~ik~~id~mA~~KlN~lH~HltDdqgwrlei~~~P~Lt~~Ga~~~~~~YT~~di~e  260 (572)
T 3ozo_A          181 ISDKPVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIRE  260 (572)
T ss_dssp             EEECCSCSEEEEEEECSSSCCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCBCCSSSHHHHHHHSSSSSSCBCHHHHHH
T ss_pred             EEecCCCccccceeccCCCCCCHHHHHHHHHHHHHcCCceEEEEeecCcCceeccccCcchhccCCcCCCCCcCHHHHHH
Confidence            479999999999999999999999999999999999999999999986  444322          34578999999999


Q ss_pred             HHHHHHHcCCeEeeccCCcchHHHHhcccccccccc--------cCCCCceecCCChhHHHHHHHHHhhhC
Q psy2348          69 ILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKMRQ--------NFNDTRFICPNARSSLDLVFKMIGRLH  131 (131)
Q Consensus        69 iv~yA~~~~IevIP~i~~~GH~~~~L~~p~~~~l~e--------~~~~~~~lcp~~~~t~~f~~~ll~ev~  131 (131)
                      |++||++|||+||||||||||+.+++++|++.....        .....++|||++|+|++|+++|++||.
T Consensus       261 iv~yA~~rgI~VIPEId~PGH~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~Ev~  331 (572)
T 3ozo_A          261 VVRFGLERGVRVLPEFDAPAHVGEGWQDTDLTVCFKAEPWKSYCVEPPCGQLNPTKDELYQYLEDIYSDMA  331 (572)
T ss_dssp             HHHHHHHTTCEEEEEEEESSSCCTTCTTTTCEECTTCSSGGGTCSSSSCCEECTTCTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCceeeeeccchHHHHHhcCchhhhccCcCCccccccCCCCcccCCCChhHHHHHHHHHHHHH
Confidence            999999999999999999999999998776543211        111247899999999999999999973

>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET: ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A* 2yl8_A* 3rpm_A*

Probab=100.00  E-value=4.8e-36  Score=250.06  Aligned_cols=129  Identities=20%  Similarity=0.177  Sum_probs=108.7

Q ss_pred             CCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec---cCCCCCC-------------------------
Q psy2348           3 TPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWED---TLPYSLG-------------------------   54 (131)
Q Consensus         3 D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed---~~p~~~~-------------------------   54 (131)
                      |.|-+.+||+|||++|||+++++||++||.||.+|+|.+.+|++|   .+++++.                         
T Consensus         1 ~~~l~~~RG~mLDvaR~f~~~~~ik~~ID~mA~~KlN~lH~HLtDdgwr~ei~~~pl~~~~~~~~~~~~~~~~~~g~~~~   80 (434)
T 2yl6_A            1 NEKLAKKKIVSIDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLDDMSITANGKTYASDDVKRAIEKGTNDY   80 (434)
T ss_dssp             CTTTTSEEEEEEETTTSCCCHHHHHHHHHHHHHHTCCEEEEEEESSSBCEECSCCCEEETTEEECHHHHHHHHHHHHHHH
T ss_pred             CCCccccceEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCcccccCCCceeeeeeccccccchhhhhcCCccc
Confidence            689999999999999999999999999999999999999999986   2222211                         


Q ss_pred             --CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-ccccccccc----cCC-CCceecCCChhHHHHHHHH
Q psy2348          55 --FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKMRQ----NFN-DTRFICPNARSSLDLVFKM  126 (131)
Q Consensus        55 --~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~e----~~~-~~~~lcp~~~~t~~f~~~l  126 (131)
                        .+++++||++|+|+||+||++|||+||||||||||+.++++ +|++.+-..    .+. ..++|||++|+|++|+++|
T Consensus        81 ~~~~~~~~YT~~di~eIv~YA~~rgI~VIPEID~PGH~~a~l~a~pel~~~~~~~~~~g~~~~~~L~p~~~~t~~fl~~v  160 (434)
T 2yl6_A           81 YNDPNGNHLTESQMTDLINYAKDKGIGLIPTVNSPGHMDAILNAMKELGIQNPNFSYFGKKSARTVDLDNEQAVAFTKAL  160 (434)
T ss_dssp             CCCTTCSCEEHHHHHHHHHHHHHTTCEEEEEEEESSSCHHHHHHHHHHTCCCCEEEETTEEEEEEECTTCHHHHHHHHHH
T ss_pred             cCCCCCCccCHHHHHHHHHHHHHcCCEEEEeccccchHHHHHHhCHHhcCCCCCCCcCCCCCCcccCCCCchHHHHHHHH
Confidence              12578999999999999999999999999999999999998 566643110    111 2468999999999999999


Q ss_pred             HhhhC
Q psy2348         127 IGRLH  131 (131)
Q Consensus       127 l~ev~  131 (131)
                      ++||.
T Consensus       161 ~~Ev~  165 (434)
T 2yl6_A          161 IDKYA  165 (434)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99973

>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*

Probab=100.00  E-value=7.3e-36  Score=249.52  Aligned_cols=127  Identities=15%  Similarity=0.177  Sum_probs=106.4

Q ss_pred             CCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecc--------CCCC--C------------------C--
Q psy2348           5 STFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--------LPYS--L------------------G--   54 (131)
Q Consensus         5 P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~--------~p~~--~------------------~--   54 (131)
                      |-|++||+|||++|||+++++||++||.||.+|+|.+.+|++|.        +|+.  |                  .  
T Consensus         6 ~l~~~RG~mLDvaR~f~~~~~ik~~ID~mA~~KlN~lH~HltDdgwriei~~~pl~~~g~~~~~~~~~~~~~~g~~~~~~   85 (442)
T 2yl5_A            6 KLAKNKVISIDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKKAIIEGTKAYYD   85 (442)
T ss_dssp             HHHSEEEEEEETTTSCCCHHHHHHHHHHHHHHTCCEEEEEEESSSBCBCCSCCCEEETTEEECHHHHHHHHHHHHHHHCC
T ss_pred             hhhhccceEEecCCCCCCHHHHHHHHHHHHHhCCcEEEEEEcCCCcceeccCCcceeceeecccccccccccCCcccccc
Confidence            45789999999999999999999999999999999999999873        2210  0                  0  


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-ccccccccc----cCCCCceecCCChhHHHHHHHHHhh
Q psy2348          55 FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKMRQ----NFNDTRFICPNARSSLDLVFKMIGR  129 (131)
Q Consensus        55 ~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~e----~~~~~~~lcp~~~~t~~f~~~ll~e  129 (131)
                      .+++++||++|||+|++||++|||+||||||||||+.++++ +|++.+...    .+...++|||++|+|++|+++|++|
T Consensus        86 ~~~~~~YT~~di~eIv~YA~~rgI~VIPEID~PGH~~a~l~~~p~l~~~~p~~~~~~~~~~~l~~~~~~t~~fl~~v~~E  165 (442)
T 2yl5_A           86 DPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIKNPQAHFDKVSKTTMDLKNEEAMNFVKALIGK  165 (442)
T ss_dssp             CTTCSCBCHHHHHHHHHHHHTTTCEEEEEEEESSSCHHHHHHHHHTTCCCCEEESSSEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHHHHHHHHcCCeeeeecccchhHHHHHHhChhhcCCCCccccCCCCCcccCCCChhHHHHHHHHHHH
Confidence            13578999999999999999999999999999999999998 666543211    1123468999999999999999999


Q ss_pred             hC
Q psy2348         130 LH  131 (131)
Q Consensus       130 v~  131 (131)
                      |.
T Consensus       166 v~  167 (442)
T 2yl5_A          166 YM  167 (442)
T ss_dssp             HH
T ss_pred             HH
Confidence            73

>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*

Probab=100.00  E-value=1.2e-35  Score=263.58  Aligned_cols=131  Identities=15%  Similarity=0.120  Sum_probs=108.1

Q ss_pred             CCCCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccC--CCC--CC--------C-------------
Q psy2348           1 MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTL--PYS--LG--------F-------------   55 (131)
Q Consensus         1 ~~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~--p~~--~~--------~-------------   55 (131)
                      ++|+|+|++||+|||++|||+++++||++||.||.+|+|.+.+|+.|..  ++.  +.        .             
T Consensus       305 I~D~Prf~~RG~mLDvsR~f~~~~~ik~~Id~mA~~KlN~lh~HltDdqgwriei~~yP~Lt~~Ga~r~~~~~~~~~~~p  384 (858)
T 1c7s_A          305 ASDAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLP  384 (858)
T ss_dssp             EEECCSCSEEEEEEECSSSCCCHHHHHHHHHHHHHTTCCEEEEECEETTEECBCCTTCTHHHHTTTEECSCTTCSSSBCC
T ss_pred             EEeCCCcceeeeeecCCCCCCCHHHHHHHHHHHHHhCCcEEEEEeccCccccccccCCchhhhccccccccccccccccc
Confidence            4799999999999999999999999999999999999999999998863  211  10        0             


Q ss_pred             -------CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc-c-cccccccc-------------CC------
Q psy2348          56 -------DNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV-K-EFAKMRQN-------------FN------  107 (131)
Q Consensus        56 -------~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~-p-~~~~l~e~-------------~~------  107 (131)
                             +++|+||++|||+|++||++|||+||||||||||+.++|++ + .|++|.+.             +.      
T Consensus       385 ~~g~~~~~~~g~YT~~direIv~YA~~rgI~VIPEID~PGH~~a~l~a~~~~YpeL~~~g~~~~~~~~~~~dp~d~s~~~  464 (858)
T 1c7s_A          385 QYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSMEARYKKLHAAGKEQEANEFRLVDQTDTSNTT  464 (858)
T ss_dssp             CTTCCSSCEECCBCHHHHHHHHHHHHTTTCEEEEEEEESSSCHHHHHHHHHHHHHHHHTTCHHHHHHTCCCCTTCCCCCC
T ss_pred             cccCCCCccCCCCCHHHHHHHHHHHHHcCCEEEEcccccchHHHHHHhccccChhhhhccCccccccccccCcccccccc
Confidence                   12579999999999999999999999999999999999974 1 24433211             10      


Q ss_pred             -----CCce-ecCCChhHHHHHHHHHhhhC
Q psy2348         108 -----DTRF-ICPNARSSLDLVFKMIGRLH  131 (131)
Q Consensus       108 -----~~~~-lcp~~~~t~~f~~~ll~ev~  131 (131)
                           .+++ |||++|+|++|+++|++||.
T Consensus       465 svq~y~~~~~L~p~~~~ty~Fl~~vl~Ev~  494 (858)
T 1c7s_A          465 SVQFFNRQSYLNPCLDSSQRFVDKVIGEIA  494 (858)
T ss_dssp             CTTSCCGGGSCCTTCHHHHHHHHHHHHHHH
T ss_pred             eecccCCcceecCCChHHHHHHHHHHHHHH
Confidence                 1234 99999999999999999973

>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil, family 84 glycoside hydrolase, carbohydrate binding module; 2.10A {Clostridium perfringens} PDB: 2cbj_A* 2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A* 2ydr_A* 2ydq_A*

Probab=99.86  E-value=1e-21  Score=169.20  Aligned_cols=89  Identities=12%  Similarity=0.122  Sum_probs=78.7

Q ss_pred             CCCCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHH---HHHHHHHHHHHcC
Q psy2348           1 MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRET---EIFIILAAAESNG   77 (131)
Q Consensus         1 ~~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~e---eikeiv~yA~~~~   77 (131)
                      ++|+|+|++||+|+|++|++++++.+|++||.||.+|+|.+.+|..|..-+.+.|+  +.||.+   |+|+|++||++||
T Consensus       143 I~D~P~f~~RG~mlD~~R~~~~~~~ik~~id~ma~~KlN~~h~Hl~DDq~~~~~wr--~~Yp~~~~~~i~elv~yA~~rg  220 (594)
T 2v5c_A          143 ITDYPTVSARGIVEGFYGTPWTHQDRLDQIKFYGENKLNTYIYAPKDDPYHREKWR--EPYPESEMQRMQELINASAENK  220 (594)
T ss_dssp             EEECCSSSEEEEECCCCSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCGGGTTTTT--SCCCGGGHHHHHHHHHHHHHTT
T ss_pred             EEECCCCCeeceeeeecCCCCCHHHHHHHHHHHHHhCCcEEEEecccCcccccccC--CCCCHHHHHHHHHHHHHHHHCC
Confidence            47999999999999999999999999999999999999999999866543334365  567754   9999999999999


Q ss_pred             CeEe----eccCCcchHH
Q psy2348          78 LASI----PLVPLYSDMD   91 (131)
Q Consensus        78 IevI----P~i~~~GH~~   91 (131)
                      |+||    |+++++||..
T Consensus       221 I~vv~~i~Pe~d~~~~~~  238 (594)
T 2v5c_A          221 VDFVFGISPGIDIRFDGD  238 (594)
T ss_dssp             CEEEEEECGGGTCCCSTH
T ss_pred             cEEEEecCCCccccCCCc
Confidence            9999    9999999973

>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}

Probab=99.84  E-value=1.5e-21  Score=171.37  Aligned_cols=88  Identities=11%  Similarity=0.100  Sum_probs=75.6

Q ss_pred             CCCCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCH---HHHHHHHHHHHHcC
Q psy2348           1 MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRE---TEIFIILAAAESNG   77 (131)
Q Consensus         1 ~~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~---eeikeiv~yA~~~~   77 (131)
                      ++|+|+|++||+|+|++|++++++.+|++||.||.+|+|.+.+|..|..-+.+.|+  +.||.   +|+|+|++||++||
T Consensus       143 I~D~P~f~~RG~m~d~~r~~~~~~~~~~~id~ma~~K~N~~h~hl~Dd~~~~~~wr--~~y~~~~~~~~~elv~ya~~rg  220 (737)
T 2v5d_A          143 ITDYPTVSARGIVEGFYGTPWTHQDRLDQIKFYGENKLNTYIYAPKDDPYHREKWR--EPYPESEMQRMQELINASAENK  220 (737)
T ss_dssp             EEECCSSSEEEEECCCSSSCCCHHHHHHHHHHHHHTTCCEEECCCSCCSTTTTTC-------CTTHHHHHHHHHHHHHTT
T ss_pred             EEECCCCceeeeecccCCCCCCHHHHHHHHHHHHHhCCeEEEEecccccchhhccC--cCCCHHHHHHHHHHHHHHHHCC
Confidence            47999999999999999999999999999999999999999999887644444465  45664   59999999999999


Q ss_pred             CeEe----eccCCcchH
Q psy2348          78 LASI----PLVPLYSDM   90 (131)
Q Consensus        78 IevI----P~i~~~GH~   90 (131)
                      |+||    |+++++||.
T Consensus       221 I~vv~~i~P~~~~~~~~  237 (737)
T 2v5d_A          221 VDFVFGISPGIDIRFDG  237 (737)
T ss_dssp             CEEEECCCCGGGCCCSS
T ss_pred             CEEEEecCCCccccCCC
Confidence            9999    999999997

>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A*

Probab=99.82  E-value=1.3e-20  Score=165.11  Aligned_cols=85  Identities=14%  Similarity=0.134  Sum_probs=75.1

Q ss_pred             CCCCCCCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCC-C-CCCCCCC---CHHHHHHHHHHHHH
Q psy2348           1 MVTPSTFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSL-G-FDNTNPF---RETEIFIILAAAES   75 (131)
Q Consensus         1 ~~D~P~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~-~-~~~~~~Y---T~eeikeiv~yA~~   75 (131)
                      ++|+|+|++||+|+|++|++.+++.+|++||.||.+|+|.+.+|..|. ||.+ . |+.  .|   |++|+|+|++||++
T Consensus       121 I~D~P~f~~RG~m~d~~r~~~s~~~ik~~id~ma~~KlN~~h~hl~Dd-p~~~~~~wr~--~yP~lt~~ei~elv~yA~~  197 (716)
T 2cho_A          121 IKDYPSVRYRGVVEGFYGTPWSHQARLSQLKFYGKNKMNTYIYGPKDD-PYHSAPNWRL--PYPDKEAAQLQELVAVANE  197 (716)
T ss_dssp             EEECCSSSEEEEEECCSSSCCCHHHHHHHHHHHHHTTCCEEEECCTTC-TTTSTTGGGS--CCCHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCcccccccCcCCCCCCHHHHHHHHHHHHHcCCcEEEEeeccC-cccccccccc--cCChhhHHHHHHHHHHHHH
Confidence            479999999999999999999999999999999999999999999875 4543 1 552  34   99999999999999


Q ss_pred             cCCeEeeccCCcch
Q psy2348          76 NGLASIPLVPLYSD   89 (131)
Q Consensus        76 ~~IevIP~i~~~GH   89 (131)
                      |||+|||||+ |||
T Consensus       198 rgI~vvpeI~-Pg~  210 (716)
T 2cho_A          198 NEVDFVWAIH-PGQ  210 (716)
T ss_dssp             TTCEEEEEEC-CTT
T ss_pred             cCCEEEEeec-ccc
Confidence            9999999996 553

>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*

Probab=97.35  E-value=0.00099  Score=57.89  Aligned_cols=103  Identities=11%  Similarity=0.134  Sum_probs=76.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE---eeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-cc
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE---WEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-VK   97 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~---~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-~p   97 (131)
                      +.+..++-|++|+.+|+|.+++.   |....|-+      |.|.-+.+.++++.|+++||.||-.+.+.++-.++.+ ||
T Consensus        21 ~~~~~~~Dl~~mk~~G~n~vr~~if~W~~~eP~~------g~~~f~~ld~~i~~~~~~Gi~vil~~~~~~~P~Wl~~~~P   94 (675)
T 3tty_A           21 DKATMEEDMRMFNLAGIDVATVNVFSWAKIQRDE------VSYDFTWLDDIIERLTKENIYLCLATSTGAHPAWMAKKYP   94 (675)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEECSSCHHHHBSSS------SCBCCHHHHHHHHHHHHTTCEEEEECCTTSCCHHHHHHCG
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeeechhhhCCcC------CccCHHHHHHHHHHHHHCCCEEEEeCCCCCCChhhhhcCC
Confidence            67889999999999999999974   33334433      4566689999999999999999988777776666664 77


Q ss_pred             ccccccccC-----CCCceecCCChhHHHHHHHHHhhh
Q psy2348          98 EFAKMRQNF-----NDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        98 ~~~~l~e~~-----~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      +.......+     ......|+++|...+.+.++++++
T Consensus        95 e~l~~d~~G~~~~~g~r~~~~~~~p~~~~~~~~~~~~l  132 (675)
T 3tty_A           95 DVLRVDYEGRKRKFGGRHNSCPNSPTYRKYAKILAGKL  132 (675)
T ss_dssp             GGBCBCTTSCBCCSCSSSCBCTTCHHHHHHHHHHHHHH
T ss_pred             ceeeecCCCcCcccCCccCCCCCCHHHHHHHHHHHHHH
Confidence            653322111     123578999999888877777654

>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*

Probab=97.21  E-value=0.0014  Score=56.38  Aligned_cols=103  Identities=14%  Similarity=0.133  Sum_probs=73.7

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE---eeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHh-ccc
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE---WEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVL-KVK   97 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~---~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L-~~p   97 (131)
                      +.+..++-++.|+.+|+|.+++.   |....|-      .|.|..+.+.++++.|+++||.||....+-+.-.++. ++|
T Consensus        12 ~~~~~~~dl~~mk~~G~N~vR~~if~W~~~eP~------~g~~d~~~ld~~ld~a~~~Gi~vil~~~~~~~P~Wl~~~~P   85 (645)
T 1kwg_A           12 PKERWKEDARRMREAGLSHVRIGEFAWALLEPE------PGRLEWGWLDEAIATLAAEGLKVVLGTPTATPPKWLVDRYP   85 (645)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEECTTCHHHHCSB------TTBCCCHHHHHHHHHHHTTTCEEEEECSTTSCCHHHHHHCG
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeeechhhcCCC------CCccChHHHHHHHHHHHHCCCEEEEeCCCCCCChhHhhcCC
Confidence            56889999999999999999983   4443343      3456778999999999999999998775555444544 366


Q ss_pred             ccccccccC-----CCCceecCCChhHHHHHHHHHhhh
Q psy2348          98 EFAKMRQNF-----NDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        98 ~~~~l~e~~-----~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      +.......+     ......|+.+|...+.++.+++++
T Consensus        86 ~~~~~~~~G~~~~~g~r~~~~~~~p~~~~~~~~~~~~l  123 (645)
T 1kwg_A           86 EILPVDREGRRRRFGGRRHYCFSSPVYREEARRIVTLL  123 (645)
T ss_dssp             GGSCBCTTSCBCCSSSSCCCCTTCHHHHHHHHHHHHHH
T ss_pred             ceeeeCCCCcCcccCccccCCCCCHHHHHHHHHHHHHH
Confidence            654322211     113468999998888888777664

>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A*

Probab=96.68  E-value=0.006  Score=53.81  Aligned_cols=109  Identities=18%  Similarity=0.208  Sum_probs=71.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEE-----eeccCC-CCCC-CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc--
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIE-----WEDTLP-YSLG-FDNTNPFRETEIFIILAAAESNGLASIPLVPLYS--   88 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~-----~ed~~p-~~~~-~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G--   88 (131)
                      +|-.+-+..|++||+-|++|+..+++|     |++.+. .++. +.--..|..=||++|++||+++||.||==.++-|  
T Consensus       365 ~~g~nte~~K~YIDFAA~~G~eyvLveGwD~GW~~~~~~~~~~~fd~~~p~pd~Dl~eL~~YA~sKGV~iilw~~t~~~~  444 (738)
T 2d73_A          365 KHSANTANVKRYIDFAAAHGFDAVLVEGWNEGWEDWFGNSKDYVFDFVTPYPDFDVKEIHRYAARKGIKMMMHHETSASV  444 (738)
T ss_dssp             CBCCCHHHHHHHHHHHHHTTCSEEEECSCBTTGGGCSSSCCSSCCCSSCBCTTCCHHHHHHHHHHTTCEEEEEEECTTBH
T ss_pred             ccCCCHHHHHHHHHHHHHcCCCEEEEEeccCCcccccCccccccccccccCCCCCHHHHHHHHHhCCCEEEEEEcCCCch
Confidence            345799999999999999999999883     443321 1221 1111345556899999999999999999999888  


Q ss_pred             -----hHHHHhccccccccccc----CCCCceecCCC-----hhHHHHHHHHHhh
Q psy2348          89 -----DMDFVLKVKEFAKMRQN----FNDTRFICPNA-----RSSLDLVFKMIGR  129 (131)
Q Consensus        89 -----H~~~~L~~p~~~~l~e~----~~~~~~lcp~~-----~~t~~f~~~ll~e  129 (131)
                           |++.++++  |..++-.    +...+.+ +.+     -...++..+++++
T Consensus       445 ~n~e~~~d~~f~~--~~~~Gv~GVKvdF~g~~~-~r~~~h~~Q~~v~~Y~~i~~~  496 (738)
T 2d73_A          445 RNYERHMDKAYQF--MADNGYNSVKSGYVGNII-PRGEHHYGQWMNNHYLYAVKK  496 (738)
T ss_dssp             HHHHHHHHHHHHH--HHHTTCCEEEEECCSSCB-STTCCTTSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHH--HHHcCCCEEEeCccccCc-CCcccccchHHHHHHHHHHHH
Confidence                 56666664  4443311    1121222 333     4477777777764

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=96.19  E-value=0.0084  Score=51.55  Aligned_cols=106  Identities=12%  Similarity=-0.012  Sum_probs=67.8

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeeccCCC---CCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH-
Q psy2348          22 SLTYLKEILPILAYTGATSLLIEWEDTLPY---SLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD-   91 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~---~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~-   91 (131)
                      +...+.+.++.|+.+|+|.++|-==..+|.   .|+      ..+..+=|.+|+|++|+-|.++||.||--+ .+.|+. 
T Consensus       152 ~~~~~~~~L~yl~~lGv~~v~l~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~~~~~lv~~~H~~Gi~VilD~-V~NH~~~  230 (618)
T 3m07_A          152 TFRAAIAKLPYLAELGVTVIEVMPVAQFGGERGWGYDGVLLYAPHSAYGTPDDFKAFIDAAHGYGLSVVLDI-VLNHFGP  230 (618)
T ss_dssp             SHHHHHTTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEE-CCSCCCS
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeCChhccCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEee-cCccCCC
Confidence            677788888999999999987620000111   122      112334489999999999999999999766 456653 


Q ss_pred             --HHhc--ccccccccccCCCCceecCCChhHHHHHHHHHh
Q psy2348          92 --FVLK--VKEFAKMRQNFNDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        92 --~~L~--~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                        .++.  .|.|-.-.......+.++..+|++.+++.+.+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~wg~~ln~~~p~V~~~i~~~~~  271 (618)
T 3m07_A          231 EGNYLPLLAPAFFHKERMTPWGNGIAYDVDAVRRYIIEAPL  271 (618)
T ss_dssp             SSCCHHHHCGGGEEEEEEETTEEEECTTSHHHHHHHHHHHH
T ss_pred             CcccccccCchhhcCCCCCCCCCCcCCCCHHHHHHHHHHHH
Confidence              1121  233322111112235689999999999888764

>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A

Probab=96.05  E-value=0.026  Score=43.25  Aligned_cols=72  Identities=17%  Similarity=0.099  Sum_probs=51.4

Q ss_pred             CCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348           6 TFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus         6 ~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      .|..||+-+  . +....++..+.|+.|+.+|+|.+++-+.+..+|..     +  ..+.+++++++|+++||.||-.+-
T Consensus        16 ~~~lrGvn~--~-~~w~~~~~~~~~~~i~~~G~N~VRi~~~~~~~~~~-----~--~~~~ld~~v~~a~~~Gi~Vild~H   85 (294)
T 2whl_A           16 PFVMRGINH--G-HAWYKDTASTAIPAIAEQGANTIRIVLSDGGQWEK-----D--DIDTIREVIELAEQNKMVAVVEVH   85 (294)
T ss_dssp             BCCCEEEEE--C-GGGCGGGHHHHHHHHHHTTCSEEEEEECCSSSSCC-----C--CHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             EEEEEEeec--c-cccCCcchHHHHHHHHHcCCCEEEEEecCCCccCc-----c--HHHHHHHHHHHHHHCCCEEEEEec
Confidence            466788875  1 22222335778999999999999997753222321     1  367899999999999999997765


Q ss_pred             Cc
Q psy2348          86 LY   87 (131)
Q Consensus        86 ~~   87 (131)
                      ..
T Consensus        86 ~~   87 (294)
T 2whl_A           86 DA   87 (294)
T ss_dssp             TT
T ss_pred             cC
Confidence            44

>3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A*

Probab=96.02  E-value=0.045  Score=44.58  Aligned_cols=103  Identities=14%  Similarity=-0.016  Sum_probs=64.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEe-eccC---CCCCC--CCCCCCCC-----------HHHHHHHHHHHHHcCCeEee
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIEW-EDTL---PYSLG--FDNTNPFR-----------ETEIFIILAAAESNGLASIP   82 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~~-ed~~---p~~~~--~~~~~~YT-----------~eeikeiv~yA~~~~IevIP   82 (131)
                      +++.+.+.+.++.|+..|+|.+++.. .+..   |..+.  -+..|.|.           -+.+..+++.|+++||.||.
T Consensus        39 ~~~~~~i~~~l~~~a~~G~N~VRv~~f~d~~~~~~~~~~~lqp~~G~yd~~~~~~~~~~~~~~LD~~i~~A~k~GI~viL  118 (383)
T 3pzg_A           39 YKSNRMIDSVLESARDMGIKVLRIWGFLDGESYCRDKNTYMHPEPGVFGVPEGISNAQNGFERLDYTIAKAKELGIKLII  118 (383)
T ss_dssp             TSCHHHHHHHHHHHHHHTCCEEEEECCCBSHHHHHHHTEESBSBTTBCSSCTTCSSCEEHHHHHHHHHHHHHHHTCEEEE
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccCCCcccccccccchHHHHHHHHHHHHHHHHCCCEEEE
Confidence            45778899999999999999999853 1110   00000  11345666           88999999999999999998


Q ss_pred             ccC----CcchHHHHhcccccccccccCCCCceecCCChhHHHHHHHHHhhh
Q psy2348          83 LVP----LYSDMDFVLKVKEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        83 ~i~----~~GH~~~~L~~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      .+-    .+|-....+.+.   .     ......+..+|+..+..++.+++|
T Consensus       119 ~l~~~w~~~GG~~~y~~~~---g-----~~~~~~f~~dp~~~~~~~~~~~~l  162 (383)
T 3pzg_A          119 VLVNNWDDFGGMNQYVRWF---G-----GTHHDDFYRDERIKEEYKKYVSFL  162 (383)
T ss_dssp             ECCBSSSTTSHHHHHHHHT---T-----CCSTTHHHHCHHHHHHHHHHHHHH
T ss_pred             EccccccccCCccchhhhc---C-----CCccccccCCHHHHHHHHHHHHHH
Confidence            872    345444433321   0     011223455677666665555543

>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}

Probab=95.85  E-value=0.038  Score=44.87  Aligned_cols=107  Identities=10%  Similarity=0.014  Sum_probs=67.8

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccC---------CCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTL---------PYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLY   87 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~---------p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~   87 (131)
                      +...|.+-+|.|+.+|+|+++|-  ++...         +|.-.   ..+..+=|.+|+|++++-|.++||.||--+ .+
T Consensus        28 ~~~~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~gY~~~dy~~i~~~~Gt~~~~~~lv~~~h~~Gi~vi~D~-V~  106 (449)
T 3dhu_A           28 NFAGVTADLQRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHELGMKVMLDI-VY  106 (449)
T ss_dssp             SHHHHHTTHHHHHHHTCSEEEECCCSCBCSTTCCTTTCCTTSBSCTTSCCGGGCCHHHHHHHHHHHHHTTCEEEEEE-CC
T ss_pred             CHHHHHHhHHHHHHcCCCEEEECCcccccccCCCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE-cc
Confidence            56778888899999999998762  11100         11100   011112289999999999999999999877 56


Q ss_pred             chHHH---Hh-cccccccccccCC---------CCceecCCChhHHHHHHHHHhh
Q psy2348          88 SDMDF---VL-KVKEFAKMRQNFN---------DTRFICPNARSSLDLVFKMIGR  129 (131)
Q Consensus        88 GH~~~---~L-~~p~~~~l~e~~~---------~~~~lcp~~~~t~~f~~~ll~e  129 (131)
                      .|+..   +. .+|.|-.....+.         .-..|+-.+|++.+.+.+++..
T Consensus       107 NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~dLn~~np~Vr~~l~~~l~~  161 (449)
T 3dhu_A          107 NHTSPDSVLATEHPEWFYHDADGQLTNKVGDWSDVKDLDYGHHELWQYQIDTLLY  161 (449)
T ss_dssp             SEECTTSHHHHHCGGGBCBCTTSCBCCSSTTCTTCEEBCTTSHHHHHHHHHHHHH
T ss_pred             CcCcCccchhhcCccceEECCCCCcCCCCCCCCCCCccCCCCHHHHHHHHHHHHH
Confidence            66653   11 3454332211110         1135788999999988887753

>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A*

Probab=95.76  E-value=0.045  Score=48.06  Aligned_cols=110  Identities=9%  Similarity=0.027  Sum_probs=66.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEE--eeccC-C---CCCCC-CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc---
Q psy2348          19 APPSLTYLKEILPILAYTGATSLLIE--WEDTL-P---YSLGF-DNTNPFRETEIFIILAAAESNGLASIPLVPLYS---   88 (131)
Q Consensus        19 ~~~~~~~lk~~i~~la~~g~n~~~l~--~ed~~-p---~~~~~-~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G---   88 (131)
                      .-++-+.+++++|.++.+|++.+.+-  |.... +   .-|++ .+...+- +.++.+++|++++|+.+.--++-..   
T Consensus       345 ~~~~ee~v~~~ad~~~~~G~~~~viDDGW~~~r~~~~~~~Gd~~~d~~kFP-~Glk~lv~~ih~~Glk~GlW~~P~~v~~  423 (732)
T 2xn2_A          345 FDFNEDKLKTIVDKAKKLGLEMFVLDDGWFGHRDDDNSSLGDWKVYKKKFP-NGLGHFADYVHEQGLKFGLWFEPEMISY  423 (732)
T ss_dssp             TCCCHHHHHHHHHHHHHTTCCEEEECSSSBTTCSSTTSCTTCCSBCTTTCT-TCHHHHHHHHHHTTCEEEEEECTTEECS
T ss_pred             cCCCHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCccccCceeeCchhcC-ccHHHHHHHHHHcCCEEEEEeCccccCC
Confidence            35688999999999999999988773  32110 0   00221 1111121 1499999999999999877665432   


Q ss_pred             hHHHHhccccccccc-----ccCCCCceecCCChhHHHHHHHHHhh
Q psy2348          89 DMDFVLKVKEFAKMR-----QNFNDTRFICPNARSSLDLVFKMIGR  129 (131)
Q Consensus        89 H~~~~L~~p~~~~l~-----e~~~~~~~lcp~~~~t~~f~~~ll~e  129 (131)
                      .+...-+||++.--.     ..+.....||+++|++.+++.+.+.+
T Consensus       424 ~S~l~~~hpdw~~~~~g~~~~~~~~~~~LD~t~Pev~~~i~~~l~~  469 (732)
T 2xn2_A          424 ESNLYKEHPDYLXHVPGRKPCPSRNQYVLELGRKEVRDNIFEQMVK  469 (732)
T ss_dssp             SSHHHHHCGGGBCCCTTSCCCCBTTBEEBCTTSHHHHHHHHHHHHH
T ss_pred             CCHHHHhCchheecCCCCCCccCCceEEEcCCCHHHHHHHHHHHHH
Confidence            111111244431100     01112247999999999987766654

>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3

Probab=95.74  E-value=0.09  Score=41.28  Aligned_cols=65  Identities=6%  Similarity=-0.053  Sum_probs=46.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEe-eccCCCCCCCCCCCCCC---HHHHHHHHHHHHHcCCeEeeccC
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIEW-EDTLPYSLGFDNTNPFR---ETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~~-ed~~p~~~~~~~~~~YT---~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      +.+.+.+++.++.|+.+|+|.+++.. .+. .+.......|.|.   -+-+.++++.|+++||.||..+-
T Consensus        38 ~~~~~~~~~dl~~~k~~G~N~vR~~~~~~~-~w~~~~~~~g~~~~~~~~~ld~~i~~a~~~Gi~vil~l~  106 (373)
T 1rh9_A           38 PSTRIKVTNTFQQASKYKMNVARTWAFSHG-GSRPLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLV  106 (373)
T ss_dssp             TTTTHHHHHHHHHHHHTTCCEEEEESSCSS-SSSCSEEETTEECHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CccHHHHHHHHHHHHHCCCCEEEECeecCC-CCccccCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence            35678899999999999999999853 110 0111012345777   45567888999999999998653

>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*

Probab=95.57  E-value=0.034  Score=43.01  Aligned_cols=56  Identities=20%  Similarity=0.218  Sum_probs=40.8

Q ss_pred             HHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCC-----HHHHHHHHHHHHHcCCeEeeccCC
Q psy2348          27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFR-----ETEIFIILAAAESNGLASIPLVPL   86 (131)
Q Consensus        27 k~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT-----~eeikeiv~yA~~~~IevIP~i~~   86 (131)
                      ++-|+.|+.+|+|.+++-+.    +......++.|+     .+-+++++++|+++||.||-.+-.
T Consensus        44 ~~d~~~l~~~G~n~vRi~i~----w~~~~~~~~~~~~~~~~~~~~d~~v~~a~~~Gi~vildlh~  104 (320)
T 3nco_A           44 DEYFKIIKERGFDSVRIPIR----WSAHISEKYPYEIDKFFLDRVKHVVDVALKNDLVVIINCHH  104 (320)
T ss_dssp             HHHHHHHHHHTCCEEEECCC----GGGSBCSSTTCCBCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             HHHHHHHHHCCCCEEEEeee----hHHhcCCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            77899999999999998432    222121223333     577899999999999999976654

>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}

Probab=95.50  E-value=0.039  Score=41.18  Aligned_cols=64  Identities=13%  Similarity=0.092  Sum_probs=42.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEeeccC---C-CCCC-CCCCC---CCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIEWEDTL---P-YSLG-FDNTN---PFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~---p-~~~~-~~~~~---~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      .+.+.+++.|+.|+.+|+|.+++..-...   | +... ...+.   .=--+.+.+++++|+++||-||..+
T Consensus        39 ~~~~~~~~~l~~~k~~G~N~vRv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~~Gi~vil~~  110 (351)
T 3vup_A           39 RNKNRIEPEFKKLHDAGGNSMRLWIHIQGETTPAFNDQGFVTGPDKQGTMLDDMKDLLDTAKKYNILVFPCL  110 (351)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSCEEESCSSSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEECcccccccCcccccccccccccccHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence            35677899999999999999998542111   1 1110 00011   1124668999999999999999765

>1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase, mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uz4_A*

Probab=95.44  E-value=0.094  Score=42.61  Aligned_cols=65  Identities=11%  Similarity=0.057  Sum_probs=47.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEeecc---CCCC---CCCCCCCCCCH---HHHHHHHHHHHHcCCeEeecc
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIEWEDT---LPYS---LGFDNTNPFRE---TEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~---~p~~---~~~~~~~~YT~---eeikeiv~yA~~~~IevIP~i   84 (131)
                      ..+.+.+++.|+.|+.+|+|.+++..-+.   +|+.   ......|.|..   +.+..+++.|+++||.||.++
T Consensus        58 ~~~~~~~~~dl~~~k~~G~N~vR~~~~d~~~~~~~~~~~~~~~~~g~~~e~~~~~lD~~l~~a~~~Gi~vil~l  131 (440)
T 1uuq_A           58 VGDRDRLAKELDNLKAIGVNNLRVLAVSEKSEINSAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVLYF  131 (440)
T ss_dssp             TCCHHHHHHHHHHHHHTTCCEEEEECCCBCCCSTTSCSSCSBSSTTCBCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEECcccCCCCCcccccccccCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence            45788999999999999999999973221   2221   11234567874   445689999999999999865

>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A

Probab=95.44  E-value=0.041  Score=43.67  Aligned_cols=52  Identities=13%  Similarity=0.096  Sum_probs=43.2

Q ss_pred             HHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        27 k~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      ++.+..|+.+|+|.+++.+. .-|.      +|.++.+.++++++.|+++||.|+-.+-
T Consensus        30 ~~~~~ilk~~G~n~vRlri~-v~P~------~g~~d~~~~~~~~~~ak~~Gl~v~ld~h   81 (334)
T 1fob_A           30 QALETILADAGINSIRQRVW-VNPS------DGSYDLDYNLELAKRVKAAGMSLYLDLH   81 (334)
T ss_dssp             CCHHHHHHHHTCCEEEEEEC-SCCT------TCTTCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             chHHHHHHHcCCCEEEEEEE-ECCC------CCccCHHHHHHHHHHHHHCCCEEEEEec
Confidence            45789999999999999763 1133      4688899999999999999999998754

>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A*

Probab=95.39  E-value=0.033  Score=42.75  Aligned_cols=58  Identities=19%  Similarity=0.245  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCC-----HHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348          26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFR-----ETEIFIILAAAESNGLASIPLVPLY   87 (131)
Q Consensus        26 lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT-----~eeikeiv~yA~~~~IevIP~i~~~   87 (131)
                      -++.++.|+.+|+|.+++.+.    +....+.++.|+     .+.+++++++|+++||.||-.+-..
T Consensus        35 ~~~d~~~l~~~G~n~vR~~i~----w~~~~~~~~~~~~~~~~~~~~d~~v~~a~~~Gi~vild~h~~   97 (317)
T 3aof_A           35 KDEFFDIIKEAGFSHVRIPIR----WSTHAYAFPPYKIMDRFFKRVDEVINGALKRGLAVVINIHHY   97 (317)
T ss_dssp             CTHHHHHHHHHTCSEEEECCC----GGGGBCSSTTCCBCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred             CHHHHHHHHHcCCCEEEEecc----HHHhcCCCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence            367889999999999999642    111111233455     5678999999999999999766443

>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron}

Probab=95.36  E-value=0.028  Score=48.92  Aligned_cols=104  Identities=11%  Similarity=0.110  Sum_probs=65.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCC--CCCCCHHHHHHHHHHHHHcCCeEeeccCCcc---hHHHH
Q psy2348          19 APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDN--TNPFRETEIFIILAAAESNGLASIPLVPLYS---DMDFV   93 (131)
Q Consensus        19 ~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~--~~~YT~eeikeiv~yA~~~~IevIP~i~~~G---H~~~~   93 (131)
                      +-.+-+..|++||+-|++|+..+++-.    .|.+..++  ..++-..+|++|++||+++||.|+==.++-|   |++.+
T Consensus       304 ~g~n~~~~k~yIDfAa~~G~~yvlvD~----gW~~~~~~d~~~~~p~~di~~l~~Ya~~kgV~i~lw~~~~~~~~~~~~~  379 (641)
T 3a24_A          304 TGVNNPTYKAYIDFASANGIEYVILDE----GWAVNLQADLMQVVKEIDLKELVDYAASKNVGIILWAGYHAFERDMENV  379 (641)
T ss_dssp             CSSSHHHHHHHHHHHHHTTCCEEEECT----TSBCTTSCCTTCBCTTCCHHHHHHHHHHTTCEEEEEEEHHHHHTSHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEec----ccccCCCCCccccCCcCCHHHHHHHHHhcCCEEEEEeeCcchHHHHHHH
Confidence            456999999999999999999988821    12211110  0123346899999999999999997766654   34444


Q ss_pred             hcccccccccccCCCCceecCCCh-hHHHHHHHHHhh
Q psy2348          94 LKVKEFAKMRQNFNDTRFICPNAR-SSLDLVFKMIGR  129 (131)
Q Consensus        94 L~~p~~~~l~e~~~~~~~lcp~~~-~t~~f~~~ll~e  129 (131)
                      +++  |.+.+-.+.- --+|+++. ++.++..+++++
T Consensus       380 ~~~--~~~~Gv~gvK-~Df~~~~~Q~~v~~y~~i~~~  413 (641)
T 3a24_A          380 CRH--YAEMGVKGFK-VDFMDRDDQEMTAFNYRAAEM  413 (641)
T ss_dssp             HHH--HHHHTCCEEE-EECCCCCSHHHHHHHHHHHHH
T ss_pred             HHH--HHHcCCCEEE-ECCCCCCcHHHHHHHHHHHHH
Confidence            443  4333211110 12455544 377777777764

>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*

Probab=95.26  E-value=0.031  Score=45.09  Aligned_cols=80  Identities=10%  Similarity=0.010  Sum_probs=52.3

Q ss_pred             eeEEeec-CCCCCCHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC------CCC-CCCCCHHHHHHHHHHHHHcCCe
Q psy2348          10 VLVHLDL-KGAPPSLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG------FDN-TNPFRETEIFIILAAAESNGLA   79 (131)
Q Consensus        10 Rg~mlD~-~~~~~~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~------~~~-~~~YT~eeikeiv~yA~~~~Ie   79 (131)
                      |+|+.|. +...=+...|.+-++.|+.+|+|+++|-  ++.. .+.|+      ..+ +.+=|.+|+|++++-|.++||.
T Consensus         6 ~~F~~d~~~d~~G~~~gi~~~ldyl~~lGv~~i~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~~Gi~   84 (405)
T 1ht6_A            6 QGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSV-SNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQ   84 (405)
T ss_dssp             ECCCTTGGGCTTCHHHHHHTTHHHHHHTTCCEEEECCCSCBS-STTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCE
T ss_pred             EeEEcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCccCC-CCCCCCccccccCCCccCCCHHHHHHHHHHHHHCCCE
Confidence            4444454 2222346778888999999999998762  1111 11222      123 4455899999999999999999


Q ss_pred             EeeccCCcchHH
Q psy2348          80 SIPLVPLYSDMD   91 (131)
Q Consensus        80 vIP~i~~~GH~~   91 (131)
                      ||--+ .+.|+.
T Consensus        85 VilD~-V~NH~~   95 (405)
T 1ht6_A           85 AIADI-VINHRC   95 (405)
T ss_dssp             EEEEE-CCSBCC
T ss_pred             EEEEE-CcCccc
Confidence            99765 344443

>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*

Probab=95.25  E-value=0.059  Score=43.69  Aligned_cols=63  Identities=13%  Similarity=0.070  Sum_probs=45.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      =+...|.+-+|.|+.+|+|+++|-  ++.. -+.|+      -.++.+=|.+|.|++|+-|.++||.||=-+
T Consensus        20 Gd~~gi~~~LdyL~~LGv~~I~L~Pi~~~~-~~~GY~~~dy~~idp~~Gt~~df~~lv~~aH~~Gi~VilD~   90 (441)
T 1lwj_A           20 GDFRGLKNAVSYLKELGIDFVWLMPVFSSI-SFHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIKVVLDL   90 (441)
T ss_dssp             CCHHHHHHTHHHHHHTTCCEEEECCCEECS-SSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCHHHHHHhhHHHHHcCCCEEEeCCCcCCC-CCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence            467788888999999999998762  1111 12222      112334489999999999999999998554

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=95.14  E-value=0.096  Score=44.70  Aligned_cols=106  Identities=16%  Similarity=0.041  Sum_probs=65.7

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eec----cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WED----TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDF   92 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed----~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~   92 (131)
                      +...|.+-++.|+.+|+|.++|-  ++.    ...|...   ..++.+=|.+|.|++|+-|.++||.||-.+ .+.|+..
T Consensus       142 ~~~gi~~~L~yl~~lGv~~I~L~Pi~~~~~~~~wGY~~~~y~~~~~~~Gt~~d~~~lv~~~H~~Gi~VilD~-V~NH~~~  220 (602)
T 2bhu_A          142 TYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLMALVDAAHRLGLGVFLDV-VYNHFGP  220 (602)
T ss_dssp             SHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEE-CCSCCCS
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECChhhccCCCCCCcccccCcccCcCCCCHHHHHHHHHHHHHCCCEEEEEe-ccccccc
Confidence            66777788899999999998762  111    0012111   112223479999999999999999999766 3455431


Q ss_pred             ---Hhc--ccccccccccCCCCceecCCChhHHHHHHHHHh
Q psy2348          93 ---VLK--VKEFAKMRQNFNDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        93 ---~L~--~p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                         .+.  .|.|-.-.........++..+|++.+++.+.+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~w~~~ln~~~~~v~~~i~~~~~  261 (602)
T 2bhu_A          221 SGNYLSSYAPSYFTDRFSSAWGMGLDYAEPHMRRYVTGNAR  261 (602)
T ss_dssp             SSCCHHHHCGGGEEEEEECSSSEEECTTSHHHHHHHHHHHH
T ss_pred             CCccccccCcccccCCCCCCCCCCccCCCHHHHHHHHHHHH
Confidence               111  132221111112234688889999999887654

>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A*

Probab=95.06  E-value=0.07  Score=42.49  Aligned_cols=57  Identities=12%  Similarity=0.091  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHcCCCEEEEEeeccCCCCCCCCC--CCCCC---HHHHHHHHHHHHHcCCeEeeccCC
Q psy2348          26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDN--TNPFR---ETEIFIILAAAESNGLASIPLVPL   86 (131)
Q Consensus        26 lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~--~~~YT---~eeikeiv~yA~~~~IevIP~i~~   86 (131)
                      .++.|+.|+.+|+|.+++-+.    +......  ++.+.   .+-++++|++|.++||.||-.+-.
T Consensus        64 ~~~di~~i~~~G~N~vRipi~----w~~~~~~~~~~~~~~~~l~~~~~vv~~a~~~Gi~vildlH~  125 (376)
T 3ayr_A           64 TEDMFKVLIDNQFNVFRIPTT----WSGHFGEAPDYKIDEKWLKRVHEVVDYPYKNGAFVILNLHH  125 (376)
T ss_dssp             CHHHHHHHHHTTCCEEEECCC----CTTSBCCTTTCCBCHHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred             cHHHHHHHHHcCCCEEEEeeE----ChhhcCCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence            467889999999999999442    2111111  22333   567899999999999999976543

>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}

Probab=95.03  E-value=0.053  Score=44.54  Aligned_cols=66  Identities=8%  Similarity=-0.001  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeeccCCC----CCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIEWEDTLPY----SLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~----~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      +...|.+-||.|+.+|+|+++|  -.-|++    .|+      ..++.+=|.+|.|++|+-|.++||.||=-+ ++.|+
T Consensus        30 dl~Gi~~kLdYLk~LGvt~I~L--~Pi~~~~~~~~GYd~~dy~~vdp~~Gt~~dfk~Lv~~aH~~Gi~VilD~-V~NHt  105 (549)
T 4aie_A           30 DLQGIISRLDYLEKLGIDAIWL--SPVYQSPGVDNGYDISDYEAIDPQYGTMADMDELISKAKEHHIKIVMDL-VVNHT  105 (549)
T ss_dssp             CHHHHHTTHHHHHHHTCSEEEE--CCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEE-CCSBC
T ss_pred             CHHHHHHhhHHHHHCCCCEEEe--CCCcCCCCCCCCcCccCCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE-CccCC
Confidence            5677778889999999999876  111222    222      112334489999999999999999998665 45564

>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A*

Probab=95.03  E-value=0.1  Score=45.71  Aligned_cols=109  Identities=12%  Similarity=0.077  Sum_probs=65.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEeeccC--CCCCCCCCCCCCCHHH------HHHHHHHHHHcCCeEeeccCCcc---
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIEWEDTL--PYSLGFDNTNPFRETE------IFIILAAAESNGLASIPLVPLYS---   88 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~--p~~~~~~~~~~YT~ee------ikeiv~yA~~~~IevIP~i~~~G---   88 (131)
                      -++-+.++++++.++.+|++.+.+-  |-.  +..+...+-|.++.+.      ++.++++++++|+++--=++-..   
T Consensus       342 ~~~e~~i~~~ad~~~~~G~~~~viD--DgW~~~r~~~~~~~Gdw~~d~~kFP~Glk~lvd~ih~~Glk~GlW~~P~~v~~  419 (720)
T 2yfo_A          342 DFTGDTIVDLAKEAASLGIDMVVMD--DGWFGKRNDDNSSLGDWQVNETKLGGSLAELITRVHEQGMKFGIWIEPEMINE  419 (720)
T ss_dssp             CCCHHHHHHHHHHHHHHTCCEEEEC--SSSBTTCSSTTSCTTCCSBCHHHHTSCHHHHHHHHHHTTCEEEEEECTTEECS
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEC--cccccCCCcccccCCCCeeChhhcCccHHHHHHHHHHCCCEEEEEecccccCC
Confidence            3578899999999999999987763  211  0000011112222222      99999999999999866555321   


Q ss_pred             hHHHHhccccccccccc-----CCCCceecCCChhHHHHHHHHHhhh
Q psy2348          89 DMDFVLKVKEFAKMRQN-----FNDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        89 H~~~~L~~p~~~~l~e~-----~~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      .+...-+||++---...     ......||+++|++.+++.+.++++
T Consensus       420 ~S~l~~~hpdw~~~~~~~~~~~~~~~~~LD~t~Pea~~~~~~~l~~l  466 (720)
T 2yfo_A          420 DSDLYRAHPDWAIRIQGKKPVRSRNQLLLDFSRKEVRDCVFDQICVV  466 (720)
T ss_dssp             SSHHHHHCGGGBCCCTTSCCCCBTTBEEBCTTSHHHHHHHHHHHHHH
T ss_pred             CCHHHHhCcceEEECCCcCcccCCceEEECCCCHHHHHHHHHHHHHH
Confidence            11112235543211110     1112369999999999998888653

>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A

Probab=94.99  E-value=0.022  Score=48.22  Aligned_cols=70  Identities=10%  Similarity=0.125  Sum_probs=53.7

Q ss_pred             EEe--ecCCCCCCHHHHHHHHHHHHHcCCCEEEEEe--eccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2348          12 VHL--DLKGAPPSLTYLKEILPILAYTGATSLLIEW--EDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPL   86 (131)
Q Consensus        12 ~ml--D~~~~~~~~~~lk~~i~~la~~g~n~~~l~~--ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~   86 (131)
                      |||  |+-+...+.+..++-+++|+.+|+|++++.+  ....|-     +.|.|.-+-++++++.|+++||.||+.+.+
T Consensus        15 vmlp~~~v~~~~~~~~w~~dl~~mk~~Gln~Vr~~V~W~~iEP~-----g~G~ydf~~~d~~id~a~~~GL~viv~L~~   88 (516)
T 1vem_A           15 LMAPLKKIPEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKN-----GDQQFDFSYAQRFAQSVKNAGMKMIPIIST   88 (516)
T ss_dssp             EECCSSCGGGTSCHHHHHHHHHHHHHTTEEEEEEEEEHHHHTCS-----STTCCCCHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             EEecccccCCCCCHHHHHHHHHHHHHcCCCEEEEecchhhccCC-----CCCccchHHHHHHHHHHHHCCCEEEEEecc
Confidence            555  5544467889999999999999999998854  433332     135677888999999999999999954444

>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3

Probab=94.99  E-value=0.093  Score=43.38  Aligned_cols=72  Identities=17%  Similarity=0.080  Sum_probs=50.9

Q ss_pred             CCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348           6 TFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus         6 ~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      .|..||+-+-   +.......++.|+.|+.+|+|.+++-+.+..+|..     +  ..+.+++++++|+++||-||-.+-
T Consensus        24 ~v~lrGvN~~---~~W~~~~~~~di~~ik~~G~N~VRipv~~g~~~~~-----~--~l~~ld~vv~~a~~~Gl~VIlDlH   93 (464)
T 1wky_A           24 PFVMRGINHG---HAWYKDQATTAIEGIANTGANTVRIVLSDGGQWTK-----D--DIQTVRNLISLAEDNNLVAVLEVH   93 (464)
T ss_dssp             BCCCEEEEEC---GGGCGGGHHHHHHHHHTTTCSEEEEEECCSSSSCC-----C--CHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEEEEEeC---cccCCcchHHHHHHHHHCCCCEEEEEcCCCCccCH-----H--HHHHHHHHHHHHHHCCCEEEEEec
Confidence            4667888762   21223346788999999999999997753222221     1  367899999999999999997665


Q ss_pred             Cc
Q psy2348          86 LY   87 (131)
Q Consensus        86 ~~   87 (131)
                      ..
T Consensus        94 ~~   95 (464)
T 1wky_A           94 DA   95 (464)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...

Probab=94.80  E-value=0.044  Score=44.05  Aligned_cols=78  Identities=15%  Similarity=0.055  Sum_probs=49.0

Q ss_pred             ceeEEeec-CCCCCCHHHH-HHHHHHHHHcCCCEEEEE--eeccC---CC----CCCC-----CCCCCCCHHHHHHHHHH
Q psy2348           9 EVLVHLDL-KGAPPSLTYL-KEILPILAYTGATSLLIE--WEDTL---PY----SLGF-----DNTNPFRETEIFIILAA   72 (131)
Q Consensus         9 ~Rg~mlD~-~~~~~~~~~l-k~~i~~la~~g~n~~~l~--~ed~~---p~----~~~~-----~~~~~YT~eeikeiv~y   72 (131)
                      -|++|+=+ .=   +=..| +++.+.|+.+|++.++|-  .|...   ++    .|+.     .+..+=|.+|.|++|+-
T Consensus         9 g~~~i~~~f~W---~w~~ia~e~~~yl~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~dy~i~~~~Gt~~df~~lv~~   85 (496)
T 4gqr_A            9 GRTSIVHLFEW---RWVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVSYKLCTRSGNEDEFRNMVTR   85 (496)
T ss_dssp             TCCEEEEETTC---CHHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHHHHHHH
T ss_pred             CCcEEEEecCC---CHHHHHHHHHHHHHHhCCCEEEeCccccCccCCCCCCCcccccCccCceeCCCCCCHHHHHHHHHH
Confidence            35666654 22   23344 466688999999999872  22211   11    1221     11223489999999999


Q ss_pred             HHHcCCeEeeccCCcchH
Q psy2348          73 AESNGLASIPLVPLYSDM   90 (131)
Q Consensus        73 A~~~~IevIP~i~~~GH~   90 (131)
                      |.++||.||=-+ .+-|+
T Consensus        86 aH~~Gi~VilD~-V~NH~  102 (496)
T 4gqr_A           86 CNNVGVRIYVDA-VINHM  102 (496)
T ss_dssp             HHHTTCEEEEEE-CCSEE
T ss_pred             HHHCCCEEEEEE-ccCcC
Confidence            999999998654 45554

>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A*

Probab=94.77  E-value=0.087  Score=41.67  Aligned_cols=59  Identities=10%  Similarity=0.015  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHcCCCEEEEEeeccCCCCCCCCC--CCCCC---HHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348          26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDN--TNPFR---ETEIFIILAAAESNGLASIPLVPLYS   88 (131)
Q Consensus        26 lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~--~~~YT---~eeikeiv~yA~~~~IevIP~i~~~G   88 (131)
                      -++.|+.|+.+|+|.+++-+.    |......  ++.+.   .+-++++|++|.++||.||-.+-..+
T Consensus        44 t~~di~~i~~~G~n~vRipi~----w~~~~~~~~~~~~~~~~l~~l~~~v~~a~~~Gi~vildlH~~~  107 (345)
T 3ndz_A           44 THAMINKIKEAGFNTLRLPVT----WDGHMGAAPEYTIDQTWMKRVEEIANYAFDNDMYVIINLHHEN  107 (345)
T ss_dssp             CHHHHHHHHHHTCCEEEECCC----CTTSBCCTTTCCBCHHHHHHHHHHHHHHHTTTCEEEECCCSCT
T ss_pred             cHHHHHHHHHCCCCEEEEeee----hHHhCCCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEecCCcc
Confidence            478899999999999998442    2221111  23444   47889999999999999997765443

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=94.63  E-value=0.093  Score=44.38  Aligned_cols=68  Identities=9%  Similarity=0.094  Sum_probs=48.4

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~   91 (131)
                      +...|.+-+|.|+.+|+|.++|-  ++... +.|+      ..++.+=|.+|.|++|+.|.++||.||--+ .+.|+.
T Consensus       174 ~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~-V~NH~~  249 (588)
T 1j0h_A          174 DLQGIIDHLDYLVDLGITGIYLTPIFRSPS-NHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDA-VFNHCG  249 (588)
T ss_dssp             CHHHHHHTHHHHHHHTCCEEEECCCEECSS-SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEE-CCSBCC
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCcccCCC-CCCcCccccCccCccCCCHHHHHHHHHHHHHCCCEEEEEE-CcCcCc
Confidence            67778788899999999998763  22211 1222      112334489999999999999999999765 455554

>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1

Probab=94.59  E-value=0.085  Score=43.29  Aligned_cols=70  Identities=19%  Similarity=0.060  Sum_probs=48.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEE--eecc-------CCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIE--WEDT-------LPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~--~ed~-------~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      =+...|.+-++.|+.+|+|.++|-  ++..       ..|.|+      ..++.+=|.+|.|++|+-|.++||.||=-+ 
T Consensus        40 G~~~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~~~~~~~~~GY~~~dy~~id~~~Gt~~df~~lv~~~H~~Gi~VilD~-  118 (484)
T 2aaa_A           40 GSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDV-  118 (484)
T ss_dssp             CCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEE-
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEeCccccCcccccccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE-
Confidence            367778888899999999998762  2211       012233      123345589999999999999999998655 


Q ss_pred             CcchHH
Q psy2348          86 LYSDMD   91 (131)
Q Consensus        86 ~~GH~~   91 (131)
                      .+.|+.
T Consensus       119 V~NH~~  124 (484)
T 2aaa_A          119 VPDHMG  124 (484)
T ss_dssp             CCSBCC
T ss_pred             CcCCcC
Confidence            345554

>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}

Probab=94.56  E-value=0.23  Score=43.81  Aligned_cols=110  Identities=12%  Similarity=0.080  Sum_probs=68.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEE--eeccC----CCCCCC-CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCc--ch-
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIE--WEDTL----PYSLGF-DNTNPFRETEIFIILAAAESNGLASIPLVPLY--SD-   89 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~--~ed~~----p~~~~~-~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~--GH-   89 (131)
                      -++-+.++++++.++.+|++.+.|-  |....    ...|+| .+...+- +-++.++++++++|+.+.--++-.  +- 
T Consensus       343 d~tee~il~~ad~~~~~G~e~fviDDGW~~~r~~d~~~~Gdw~~d~~kFP-~Gl~~lv~~ih~~Glk~glW~~Pe~v~~d  421 (745)
T 3mi6_A          343 DFNEAKLMTIVNQAKRLGIEMFVLDDGWFGHRDDDTTSLGDWFVDQRKFP-DGIEHFSQAVHQQGMKFGLWFEPEMVSVD  421 (745)
T ss_dssp             CCCHHHHHHHHHHHHHHTCCEEEECTTCBTTCSSTTSCTTCCSBCTTTCT-THHHHHHHHHHHTTCEEEEEECTTEECSS
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEECcccccCCCCCcccCCCceeChhhcC-ccHHHHHHHHHHCCCEEEEEEcccccCCC
Confidence            4788999999999999999976652  22110    011221 1222222 349999999999999988766642  11 


Q ss_pred             HHHHhccccccccccc-----CCCCceecCCChhHHHHHHHHHhhh
Q psy2348          90 MDFVLKVKEFAKMRQN-----FNDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        90 ~~~~L~~p~~~~l~e~-----~~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      +...-+||++.--...     ......|++++|++.+++.+.++++
T Consensus       422 S~l~~~hPdw~l~~~~g~~~~~r~~~vLD~tnPevr~~i~~~l~~l  467 (745)
T 3mi6_A          422 SDLYQQHPDWLIHAPKSTPTPGRHQFVLDMARPEVVDYLFKLMSQM  467 (745)
T ss_dssp             SSHHHHCGGGBCCCTTCCCCCSSSCEEBCTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHhCcceEEEcCCCceeecCCeEEECCCCHHHHHHHHHHHHHH
Confidence            1112235554211111     1123479999999999999998764

>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}

Probab=94.54  E-value=0.061  Score=43.93  Aligned_cols=67  Identities=16%  Similarity=0.135  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      +...|.+-+|.|+.+|+|+++|-  ++... +.|+      ..++.+=|.+|.|++|+-|.++||.||=-+ .+.|+
T Consensus        48 ~~~gi~~~LdyL~~LGv~~I~l~Pi~~~~~-~~gY~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~VilD~-V~NH~  122 (475)
T 2z1k_A           48 TLWGVAEKLPYLLDLGVEAIYLNPVFASTA-NHRYHTVDYFQVDPILGGNEALRHLLEVAHAHGVRVILDG-VFNHT  122 (475)
T ss_dssp             CHHHHHHTHHHHHHHTCCEEEECCCEEESS-TTCCSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEEE-CCSBC
T ss_pred             CHHHHHHHhHHHHHcCCCEEEECCCcCCCC-CCCcCCCCcCccCcccCCHHHHHHHHHHHHHCCCEEEEEE-ecccc
Confidence            57788888999999999998762  22111 1222      112223389999999999999999998655 34443

>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*

Probab=94.52  E-value=0.099  Score=42.89  Aligned_cols=77  Identities=12%  Similarity=-0.027  Sum_probs=51.7

Q ss_pred             CCCCCCceeEEeec-CCCCCCHHHHHH-HHHHHHHcCCCEEEEEeeccCCCC---------CC-----CCCCCCCCHHHH
Q psy2348           3 TPSTFKEVLVHLDL-KGAPPSLTYLKE-ILPILAYTGATSLLIEWEDTLPYS---------LG-----FDNTNPFRETEI   66 (131)
Q Consensus         3 D~P~f~~Rg~mlD~-~~~~~~~~~lk~-~i~~la~~g~n~~~l~~ed~~p~~---------~~-----~~~~~~YT~eei   66 (131)
                      |.+--..+++|+.+ ...   ...|.+ ++|.|+.+|+|.++|-  ..++..         |+     -.+..+=|.+|.
T Consensus         3 ~~~~~~~~~~i~~~F~w~---~~gi~~~~ldyL~~LGv~~I~l~--Pi~~~~~~~~~~~~~gYd~~dy~idp~~Gt~~d~   77 (471)
T 1jae_A            3 DANFASGRNSIVHLFEWK---WNDIADECERFLQPQGFGGVQIS--PPNEYLVADGRPWWERYQPVSYIINTRSGDESAF   77 (471)
T ss_dssp             CCCCCTTCEEEEEETTCC---HHHHHHHHHHTTTTTTEEEEECC--CCSCBBCCTTCCGGGGGSBCCSCSEETTEEHHHH
T ss_pred             CCCCCCCCCeEEEEecCC---HHHHHHHHHHHHHHcCCCEEEeC--ccccccCCCCCCcccccccccccccCCCCCHHHH
Confidence            45556678999998 454   555554 4688999999998762  111111         11     011123379999


Q ss_pred             HHHHHHHHHcCCeEeecc
Q psy2348          67 FIILAAAESNGLASIPLV   84 (131)
Q Consensus        67 keiv~yA~~~~IevIP~i   84 (131)
                      |++++-|.++||.||=-+
T Consensus        78 ~~lv~~~h~~Gi~VilD~   95 (471)
T 1jae_A           78 TDMTRRCNDAGVRIYVDA   95 (471)
T ss_dssp             HHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHCCCEEEEEE
Confidence            999999999999998544

>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A

Probab=94.48  E-value=0.1  Score=42.63  Aligned_cols=70  Identities=16%  Similarity=0.053  Sum_probs=48.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEE--eecc-------CCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIE--WEDT-------LPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~--~ed~-------~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      =+...|.+-+|.|+.+|+|+++|-  ++..       ..|.|+      ..+..+=|.+|.|++|+-|.++||.||=-+ 
T Consensus        40 G~~~gi~~~LdyL~~lGvt~I~l~Pi~~~~~~~~~~~~~~~GY~~~d~~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~-  118 (478)
T 2guy_A           40 GTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDV-  118 (478)
T ss_dssp             BCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTTSCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEE-
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEeCCcccCCccccCCCCCCCCCCcccccccCccCCCHHHHHHHHHHHHHCCCEEEEEE-
Confidence            367788888899999999998762  2211       012233      112233489999999999999999998655 


Q ss_pred             CcchHH
Q psy2348          86 LYSDMD   91 (131)
Q Consensus        86 ~~GH~~   91 (131)
                      .+.|+.
T Consensus       119 V~NH~~  124 (478)
T 2guy_A          119 VANHMG  124 (478)
T ss_dssp             CCSBCC
T ss_pred             CcccCC
Confidence            455554

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=94.47  E-value=0.094  Score=44.31  Aligned_cols=68  Identities=15%  Similarity=0.102  Sum_probs=48.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~   91 (131)
                      +...+.+-+|.|+.+|+|.++|-  ++... ..|+      ..++.+=|.+|.|++|+.|.++||.||=-+ .+.|+.
T Consensus       171 ~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H~~Gi~VilD~-V~NH~~  246 (585)
T 1wzl_A          171 DLKGVIDRLPYLEELGVTALYFTPIFASPS-HHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA-VFNHAG  246 (585)
T ss_dssp             CHHHHHHTHHHHHHHTCCEEEECCCEECSS-SSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEE-CCSBCC
T ss_pred             CHHHHHHHhHHHHHcCCCEEEECCcccCCC-CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE-cCCcCC
Confidence            67777777899999999998763  22211 1232      112334489999999999999999998665 555554

>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3

Probab=94.35  E-value=0.088  Score=40.73  Aligned_cols=62  Identities=11%  Similarity=0.098  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEee--cc-CC-C--CCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          23 LTYLKEILPILAYTGATSLLIEWE--DT-LP-Y--SLGFDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~~e--d~-~p-~--~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      .+.+++-++.|+.+|+|.+++...  .. -| +  .|.....+...-+.+.++++.|+++||.||..+
T Consensus        44 ~~~~~~d~~~~k~~G~N~vR~~~~~~~~~~p~~~~~g~~~~~~~~~~~~ld~~~~~a~~~Gi~vil~l  111 (353)
T 2c0h_A           44 KSTFESTLSDMQSHGGNSVRVWLHIEGESTPEFDNNGYVTGIDNTLISDMRAYLHAAQRHNILIFFTL  111 (353)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSCEEECCTTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             hHHHHHHHHHHHHcCCCEEEEceecCCccCccccCCCccccCCHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence            677899999999999999998532  11 01 1  111001122456789999999999999999865

>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*

Probab=94.31  E-value=0.33  Score=42.34  Aligned_cols=107  Identities=13%  Similarity=0.020  Sum_probs=64.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEE--eeccC-------------------CCC-C-----C-CCCCCCCCHHHHHHHHHH
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIE--WEDTL-------------------PYS-L-----G-FDNTNPFRETEIFIILAA   72 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~--~ed~~-------------------p~~-~-----~-~~~~~~YT~eeikeiv~y   72 (131)
                      =+...+.+-+|.|+.+|+|.++|-  ++...                   ||. +     + ..+..+=|.+|.|++++-
T Consensus       250 Gd~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~g~~n~~~~~~~d~GspY~i~d~~~~y~~idp~~Gt~edfk~LV~~  329 (695)
T 3zss_A          250 GTFRTAARRLPAIAAMGFDVVYLPPIHPIGTTHRKGRNNTLSATGDDVGVPWAIGSPEGGHDSIHPALGTLDDFDHFVTE  329 (695)
T ss_dssp             CCHHHHGGGHHHHHHTTCCEEEECCCSCBCCTTCCCGGGCSSCCTTCCCCTTSBCBTTBCTTSCCTTTCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEECCcccCCccccccccccccccccCCCCcccccCCCCCccccCcccCCHHHHHHHHHH
Confidence            467788889999999999998762  11100                   010 0     1 111223378999999999


Q ss_pred             HHHcCCeEeeccCCcchH---HHHhcccccccccccCC----------C--CceecCCC--hhHHHHHHHHHh
Q psy2348          73 AESNGLASIPLVPLYSDM---DFVLKVKEFAKMRQNFN----------D--TRFICPNA--RSSLDLVFKMIG  128 (131)
Q Consensus        73 A~~~~IevIP~i~~~GH~---~~~L~~p~~~~l~e~~~----------~--~~~lcp~~--~~t~~f~~~ll~  128 (131)
                      |.++||.||=-+= +.|+   .+.-.+|.|-.....+.          +  ...|+-.+  |++.+++.+++.
T Consensus       330 aH~~GI~VilD~V-~Nhs~~~~~~~~~~dwf~~~~dg~~~~~~~~~~~~~~~~dLn~~n~~p~V~~~l~~~l~  401 (695)
T 3zss_A          330 AGKLGLEIALDFA-LQCSPDHPWVHKHPEWFHHRPDGTIAHAENPPKKYQDIYPIAFDADPDGLATETVRILR  401 (695)
T ss_dssp             HHHTTCEEEEEEC-CEECTTSTHHHHCGGGSCCCTTSCCCCEEETTEEETTCEECCCSSCHHHHHHHHHHHHH
T ss_pred             HHHCCCEEEEEee-ccCCccchhhhcccceeeecCCCCcccCCCCCccccccccccccCCcHHHHHHHHHHHH
Confidence            9999999985442 2232   22223554433322111          0  01266667  888888887765

>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A

Probab=94.17  E-value=0.15  Score=41.75  Aligned_cols=68  Identities=13%  Similarity=0.081  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccCC-CCCC-----C----------CCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTLP-YSLG-----F----------DNTNPFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~p-~~~~-----~----------~~~~~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      +...|.+-+|.|+.+|+|.++|-  ++...+ +.|+     .          .+..+=|.+|.|++|+-|.++||.||=-
T Consensus        21 ~~~gi~~~LdyL~~LGvt~I~l~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~idp~~Gt~~df~~lv~~aH~~Gi~VilD  100 (480)
T 1ud2_A           21 HWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGD  100 (480)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             cHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCcCccchhhcccccccCccCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence            46778888899999999998762  221111 1222     1          2233458999999999999999999854


Q ss_pred             cCCcchH
Q psy2348          84 VPLYSDM   90 (131)
Q Consensus        84 i~~~GH~   90 (131)
                      + .+-|+
T Consensus       101 ~-V~NH~  106 (480)
T 1ud2_A          101 V-VMNHK  106 (480)
T ss_dssp             E-CCSEE
T ss_pred             E-ccCcc
Confidence            4 45555

>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A

Probab=94.17  E-value=0.2  Score=38.92  Aligned_cols=62  Identities=18%  Similarity=0.092  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHcCCCEEEEEeec--cCCC--CCCCCC--CCC-----CCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348          26 LKEILPILAYTGATSLLIEWED--TLPY--SLGFDN--TNP-----FRETEIFIILAAAESNGLASIPLVPLY   87 (131)
Q Consensus        26 lk~~i~~la~~g~n~~~l~~ed--~~p~--~~~~~~--~~~-----YT~eeikeiv~yA~~~~IevIP~i~~~   87 (131)
                      +++.++.|+.+|+|.+++-+.-  ..|-  .+.+..  .++     -..+-+++++++|+++||.||-.+-.|
T Consensus        46 ~~~~~~~~~~~G~n~vRi~~~~~~~~~~~~~~~~~~~~~np~~~g~~~~~~ld~~v~~a~~~Gi~vild~h~~  118 (358)
T 1ece_A           46 YRSMLDQIKSLGYNTIRLPYSDDILKPGTMPNSINFYQMNQDLQGLTSLQVMDKIVAYAGQIGLRIILDRHRP  118 (358)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEGGGGSTTCCCCSCCCSSSCTTTTTCCHHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             HHHHHHHHHHcCCCEEEeeccHHHhcCCCCCccccccccCccccCccHHHHHHHHHHHHHHCCCEEEEecCCC
Confidence            5899999999999999986641  1111  111100  111     256889999999999999999766544

>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*

Probab=94.16  E-value=0.14  Score=42.06  Aligned_cols=68  Identities=15%  Similarity=0.136  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccCC-CCCC-----C----------CCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTLP-YSLG-----F----------DNTNPFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~p-~~~~-----~----------~~~~~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      +...|.+-+|.|+.+|+|.++|-  ++...| +.|+     .          .+..+=|.+|.|++|+-|.++||.||=-
T Consensus        23 ~~~gi~~~LdyL~~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~~~~~~q~~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD  102 (485)
T 1wpc_A           23 HWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGD  102 (485)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             cHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCCCeecccccccccccCccCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence            36777888899999999998773  221111 1122     1          2233458999999999999999999855


Q ss_pred             cCCcchH
Q psy2348          84 VPLYSDM   90 (131)
Q Consensus        84 i~~~GH~   90 (131)
                      + .+-|+
T Consensus       103 ~-V~NH~  108 (485)
T 1wpc_A          103 V-VMNHK  108 (485)
T ss_dssp             E-CCSEE
T ss_pred             E-ecccc
Confidence            4 45555

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*

Probab=94.15  E-value=0.2  Score=41.69  Aligned_cols=104  Identities=13%  Similarity=0.079  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHcCCCEEEEE--eec--------c----CCCCCCCCC--CCCCCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348          24 TYLKEILPILAYTGATSLLIE--WED--------T----LPYSLGFDN--TNPFRETEIFIILAAAESNGLASIPLVPLY   87 (131)
Q Consensus        24 ~~lk~~i~~la~~g~n~~~l~--~ed--------~----~p~~~~~~~--~~~YT~eeikeiv~yA~~~~IevIP~i~~~   87 (131)
                      ..+.+-+|.|+.+|+|.++|-  +|.        .    ..|.-.-.+  ..+=|.+|.|++++-|.++||.||=-+ .+
T Consensus        37 ~gi~~~LdyLk~LGvt~IwL~Pi~e~~~~~~~~~~~~~~~GY~~~~id~~p~~Gt~~dfk~Lv~~aH~~GI~VilD~-V~  115 (527)
T 1gcy_A           37 NILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDV-VP  115 (527)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTCSSSCSCSSSCCHHHHHHHHHHHHHTTCEEEEEE-CC
T ss_pred             HHHHHHHHHHHhcCCCEEEeCCccccccccccCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE-ee
Confidence            677888999999999998762  210        0    112200112  334489999999999999999998654 34


Q ss_pred             chHHHH-------hccc-cccccc--cc----------C---CCCceecCCChhHHHHHHHHHh
Q psy2348          88 SDMDFV-------LKVK-EFAKMR--QN----------F---NDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        88 GH~~~~-------L~~p-~~~~l~--e~----------~---~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      .|+..-       +.+. .|-.-.  +.          .   ..-..|+-.||++.+++.+++.
T Consensus       116 NHt~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~f~~~~~dLn~~np~Vr~~i~~~~~  179 (527)
T 1gcy_A          116 NHMNRGYPDKEINLPAGQGFWRNDCADPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFT  179 (527)
T ss_dssp             SBCCTTCSSCSCCCCSSSSCBGGGSCCCSSSCBTTBSSCCSTTSTTBBCTTSHHHHHHHHHHHH
T ss_pred             cCcCCCCCCccccCCCcchhcccccCCCCCcccCcccCccccccCCccccCCHHHHHHHHHHHH
Confidence            444321       1111 121100  00          0   1124578889999999888765

>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A

Probab=94.15  E-value=0.15  Score=41.72  Aligned_cols=68  Identities=13%  Similarity=0.044  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccCC-CCCC-----C----------CCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTLP-YSLG-----F----------DNTNPFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~p-~~~~-----~----------~~~~~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      +...|.+-+|.|+.+|+|.++|-  ++...+ +.|+     .          .+..+=|.+|.|++|+-|.++||.||=-
T Consensus        19 ~~~gi~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~id~~~Gt~~df~~lv~~aH~~Gi~VilD   98 (483)
T 3bh4_A           19 HWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGD   98 (483)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEECCCSEESSTTSCSSSEEETTCSSCSCCSSCSSCSSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CHHHHHHHHHHHHhcCCCEEEcCccccCCCCCCCCcccccccccccccccCccCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence            46678888899999999998772  221111 1122     1          2233458999999999999999999854


Q ss_pred             cCCcchH
Q psy2348          84 VPLYSDM   90 (131)
Q Consensus        84 i~~~GH~   90 (131)
                      + .+.|+
T Consensus        99 ~-V~NH~  104 (483)
T 3bh4_A           99 V-VLNHK  104 (483)
T ss_dssp             E-CCSEE
T ss_pred             E-ccCcc
Confidence            4 45555

>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A

Probab=94.14  E-value=0.15  Score=39.56  Aligned_cols=55  Identities=11%  Similarity=0.069  Sum_probs=40.1

Q ss_pred             HHHHHHHHHcCCCEEEEEee--ccCCCCCCCCCCCCCC---HHHHHHHHHHHHHcCCeEeeccC
Q psy2348          27 KEILPILAYTGATSLLIEWE--DTLPYSLGFDNTNPFR---ETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        27 k~~i~~la~~g~n~~~l~~e--d~~p~~~~~~~~~~YT---~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      ++-|+.|+.+|+|.+++-+.  ...|-.    ..+.|.   .+.+++++++|+++||.||-.+-
T Consensus        31 ~~d~~~i~~~G~n~vRi~i~~~~~~~~~----~~g~~~~~~~~~l~~~v~~a~~~Gi~vildlh   90 (343)
T 1ceo_A           31 EKDIETIAEAGFDHVRLPFDYPIIESDD----NVGEYKEDGLSYIDRCLEWCKKYNLGLVLDMH   90 (343)
T ss_dssp             HHHHHHHHHHTCCEEEEEEEGGGTBCSS----STTCBCHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHcCCCEEEecCCHHHhcccc----CCCcccHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence            67889999999999998653  211211    123454   46789999999999999997654

>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina}

Probab=94.03  E-value=0.1  Score=41.56  Aligned_cols=60  Identities=8%  Similarity=-0.036  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEe--eccCCCCCCCCCCCCCC---HHHHHHHHHHHHHcCCeEeeccCC
Q psy2348          23 LTYLKEILPILAYTGATSLLIEW--EDTLPYSLGFDNTNPFR---ETEIFIILAAAESNGLASIPLVPL   86 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~~--ed~~p~~~~~~~~~~YT---~eeikeiv~yA~~~~IevIP~i~~   86 (131)
                      ++..|++++.|+.+|+|.+++-+  +.-.|-.    .++.+.   .+-++++|++|.++||.||=.+-.
T Consensus        42 ~~~t~~m~~~i~~~G~N~vRipi~w~~~~~~~----~~g~~~~~~l~~ld~vV~~a~~~Gi~vIlDlH~  106 (340)
T 3qr3_A           42 PDGIGQMQHFVNEDGMTIFRLPVGWQYLVNNN----LGGNLDSTSISKYDQLVQGCLSLGAYCIVDIHN  106 (340)
T ss_dssp             CCHHHHHHHHHHHHCCCEEEEEECHHHHTTTC----TTCCCCHHHHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CccHHHHHHHHHHCCCCEEEEEeeHHHhCCCC----CCCccCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            44569999999999999999854  3222210    123444   466889999999999999966543

>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A*

Probab=93.95  E-value=0.15  Score=40.53  Aligned_cols=58  Identities=17%  Similarity=0.109  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHcCCCEEEEEeeccCCCCCCCC--CCCCCC---HHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348          26 LKEILPILAYTGATSLLIEWEDTLPYSLGFD--NTNPFR---ETEIFIILAAAESNGLASIPLVPLY   87 (131)
Q Consensus        26 lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~--~~~~YT---~eeikeiv~yA~~~~IevIP~i~~~   87 (131)
                      .++.|+.|+.+|+|.+++-+.    +...+.  .++.+.   .+-+++++++|+++||.||-.+-..
T Consensus        71 ~~~d~~~l~~~G~n~vRl~i~----w~~~~~~~~~~~~~~~~l~~~d~~v~~a~~~Gi~vild~h~~  133 (395)
T 2jep_A           71 TPELIKKVKAAGFKSIRIPVS----YLNNIGSAPNYTINAAWLNRIQQVVDYAYNEGLYVIINIHGD  133 (395)
T ss_dssp             CHHHHHHHHHTTCCEEEECCC----CGGGBCCTTTCCBCHHHHHHHHHHHHHHHTTTCEEEECCCGG
T ss_pred             cHHHHHHHHHcCCCEEEEeee----eccccCCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEECCCc
Confidence            467899999999999998542    111111  122344   3569999999999999999765543

>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*

Probab=93.88  E-value=0.15  Score=38.93  Aligned_cols=51  Identities=12%  Similarity=0.210  Sum_probs=39.2

Q ss_pred             HHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          28 EILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        28 ~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      +.|+.|+.+|+|.+++-+.....|..    .   ..+.+++++++|+++||-||-.+-
T Consensus        36 ~~~~~lk~~G~N~VRi~~~~~~~w~~----~---~~~~ld~~v~~a~~~Gi~Vild~h   86 (302)
T 1bqc_A           36 QAFADIKSHGANTVRVVLSNGVRWSK----N---GPSDVANVISLCKQNRLICMLEVH   86 (302)
T ss_dssp             THHHHHHHTTCSEEEEEECCSSSSCC----C---CHHHHHHHHHHHHHTTCEEEEEEG
T ss_pred             HHHHHHHHcCCCEEEEEccCCcccCC----C---CHHHHHHHHHHHHHCCCEEEEEec
Confidence            67889999999999997642111211    1   368899999999999999997764

>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3

Probab=93.85  E-value=0.17  Score=39.31  Aligned_cols=58  Identities=16%  Similarity=-0.051  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCC---CHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          26 LKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPF---RETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        26 lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~Y---T~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      .++.++.|+.+|+|.+++-+.-.. +... ...+.+   ..+.+++++++|+++||.||-.+-
T Consensus        38 ~~~d~~~i~~~G~n~vRi~i~~~~-~~~~-~~p~~~~~~~~~~ld~~v~~a~~~Gi~vildlh   98 (341)
T 1vjz_A           38 KEEDFLWMAQWDFNFVRIPMCHLL-WSDR-GNPFIIREDFFEKIDRVIFWGEKYGIHICISLH   98 (341)
T ss_dssp             CHHHHHHHHHTTCCEEEEEEEGGG-TSCS-SCTTCCCGGGHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CHHHHHHHHHcCCCEEEeeCCHHH-hcCC-CCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence            477889999999999998653110 1110 001122   567889999999999999997653

>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A

Probab=93.81  E-value=0.085  Score=43.32  Aligned_cols=68  Identities=10%  Similarity=0.017  Sum_probs=47.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      =+...|.+-+|.|+.+|+|.++|-  ++... +.|+      ..++.+=|.+|.|++|+-|.++||.||=-+ .+.|+
T Consensus        53 Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~-~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~-V~NH~  128 (488)
T 2wc7_A           53 GDLWGIMEDLDYIQNLGINAIYFTPIFQSAS-NHRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNIKVVLDG-VFNHS  128 (488)
T ss_dssp             CCHHHHHHTHHHHHHHTCCEEEESCCEEECT-TCTTSEEEEEEECGGGTHHHHHHHHHHHHHHTTCEEEEEE-CCSBC
T ss_pred             cCHHHHHHhhHHHHHcCCCEEEECCCCCCCC-CCCCCCcCccccCcccCCHHHHHHHHHHHHHCCCEEEEEe-CCCcC
Confidence            356778888999999999998762  22111 1232      112223379999999999999999998665 44454

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=93.78  E-value=0.17  Score=42.75  Aligned_cols=68  Identities=9%  Similarity=0.071  Sum_probs=47.6

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~   91 (131)
                      +...+.+-+|.|+.+|+|.++|-  ++... ..|+      ..++.+=|.+|.|++|+.|.++||.||=-+ .+.|+.
T Consensus       170 d~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~-V~NH~~  245 (583)
T 1ea9_C          170 DLQGVIDHLDHLSKLGVNAVYFTPLFKATT-NHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDA-VFNHSG  245 (583)
T ss_dssp             CHHHHHHTHHHHHHHTCSEEEECCCSSCSS-SSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEEC-CCSBCC
T ss_pred             CHHHHHHhhHHHHHcCCCEEEECCCccCCC-CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE-ccccCC
Confidence            66778778899999999998763  22111 1122      112333489999999999999999998765 455554

>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*

Probab=93.74  E-value=0.18  Score=42.33  Aligned_cols=71  Identities=14%  Similarity=0.102  Sum_probs=48.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEE--eecc---CCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIE--WEDT---LPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~--~ed~---~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~   91 (131)
                      .=+...|.+-+|.|+.+|+|.++|-  ++..   ..|...   ..++.+=|.+|.+++++-|.++||.||=-+ .+.|+.
T Consensus        28 ~Gdl~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~-V~NHts  106 (557)
T 1zja_A           28 IGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDV-VINHSS  106 (557)
T ss_dssp             SCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEE-CCSBCC
T ss_pred             ccCHHHHHHHHHHHHHcCCCEEEECCCccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE-eccccc
Confidence            3467788888899999999998762  2211   122211   112334489999999999999999998554 345543

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=93.67  E-value=0.13  Score=43.45  Aligned_cols=105  Identities=11%  Similarity=0.037  Sum_probs=61.3

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE----eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE----WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~----~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~   91 (131)
                      +...+.+.++.|+.+|+|.++|-    +... .+.|+      ..+..+=|.+|.|++|+-|.++||.||=.+ .+.|+.
T Consensus       117 ~~~~~~~~l~~l~~lG~~~v~l~Pi~~~~~~-~~~GY~~~~~~~~~~~~Gt~~d~~~lv~~~h~~Gi~VilD~-V~NH~~  194 (558)
T 3vgf_A          117 TFEGVIRKLDYLKDLGITAIEIMPIAQFPGK-RDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDV-VYNHVG  194 (558)
T ss_dssp             SHHHHHHTHHHHHHHTCCEEEECCCEECSSS-CCCSTTCCEEEEECGGGTHHHHHHHHHHHHHHTTCEEEEEE-CCSCCC
T ss_pred             CHHHHHHHHHHHHHcCCcEEEECCcccCCCC-CCcCcccccccccccccCCHHHHHHHHHHHHHcCCEEEEEE-eecccc
Confidence            66778888999999999998762    1111 11122      111222378999999999999999999876 455553


Q ss_pred             H---Hh-cccccccccccCCCCceec---CCChhHHHHHHHHHh
Q psy2348          92 F---VL-KVKEFAKMRQNFNDTRFIC---PNARSSLDLVFKMIG  128 (131)
Q Consensus        92 ~---~L-~~p~~~~l~e~~~~~~~lc---p~~~~t~~f~~~ll~  128 (131)
                      .   ++ .++.|-.-+......+.++   +++|++.+++.+.+.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~g~~~n~~~~~~~~v~~~l~~~~~  238 (558)
T 3vgf_A          195 PEGNYMVKLGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVE  238 (558)
T ss_dssp             SSSCCGGGTSCCEEEEEEETTEEEECSSSTTHHHHHHHHHHHHH
T ss_pred             CCCCcccccCCccCCCCCCCCCCcccCCCCCCHHHHHHHHHHHH
Confidence            1   12 1222211110001111222   356788888776654

>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A*

Probab=93.65  E-value=0.18  Score=42.69  Aligned_cols=70  Identities=11%  Similarity=0.168  Sum_probs=48.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEE--eecc---CCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIE--WEDT---LPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~--~ed~---~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      .=+...|.+-+|.|+.+|+|+++|-  ++..   .+|.-.   ..++.+=|.+|.|++|+-|.++||.||=-+ .+.|+
T Consensus        36 ~Gdl~gi~~~Ldyl~~LGv~~i~l~Pi~~~~~~~~GY~~~dy~~id~~~Gt~~df~~lv~~~h~~Gi~VilD~-V~NH~  113 (589)
T 3aj7_A           36 WGDMKGIASKLEYIKELGADAIWISPFYDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKFITDL-VINHC  113 (589)
T ss_dssp             SCCHHHHHHTHHHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEE-CCSBC
T ss_pred             ccCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe-ccccc
Confidence            3467888888999999999998762  2211   122211   113345589999999999999999998554 34444

>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A

Probab=93.56  E-value=0.2  Score=42.44  Aligned_cols=70  Identities=17%  Similarity=0.080  Sum_probs=48.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEE--eeccC---CCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIE--WEDTL---PYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYS   88 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~--~ed~~---p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G   88 (131)
                      -=+...|.+-+|.|+.+|+|+++|-  ++...   .|.|+      ..++.+=|.+|.|++|+-|.++||.||=-+ .+-
T Consensus       144 gGdl~gi~~~Ldyl~~LGv~aI~l~Pi~~~~~~~~~~~GY~~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~-V~N  222 (601)
T 3edf_A          144 GGDIRGTIDHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDV-VLS  222 (601)
T ss_dssp             CCCHHHHHHTHHHHHHTTCCEEEESCCEECCCSSSGGGCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEE-CCS
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCcCccccccccccCCCHHHHHHHHHHHHHcCCEEEEEE-CCc
Confidence            3457888899999999999998762  22110   11222      113445589999999999999999998554 344


Q ss_pred             hH
Q psy2348          89 DM   90 (131)
Q Consensus        89 H~   90 (131)
                      |+
T Consensus       223 H~  224 (601)
T 3edf_A          223 HI  224 (601)
T ss_dssp             BC
T ss_pred             cc
Confidence            44

>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A

Probab=93.55  E-value=0.14  Score=39.41  Aligned_cols=57  Identities=12%  Similarity=0.164  Sum_probs=40.7

Q ss_pred             HHHHHHHHHcCCCEEEEEee--ccCCCCCCCCCCCCCCHH---HHHHHHHHHHHcCCeEeeccCCc
Q psy2348          27 KEILPILAYTGATSLLIEWE--DTLPYSLGFDNTNPFRET---EIFIILAAAESNGLASIPLVPLY   87 (131)
Q Consensus        27 k~~i~~la~~g~n~~~l~~e--d~~p~~~~~~~~~~YT~e---eikeiv~yA~~~~IevIP~i~~~   87 (131)
                      ++-|+.|+.+|+|.+++-+.  ...|-    ..++.+.++   -+++++++|+++||.||-.+-..
T Consensus        34 ~~di~~~~~~G~n~vRi~i~w~~~~~~----~~~~~~~~~~l~~~~~~v~~~~~~gi~vild~h~~   95 (305)
T 1h1n_A           34 PNTIDTLISKGMNIFRVPFMMERLVPN----SMTGSPDPNYLADLIATVNAITQKGAYAVVDPHNY   95 (305)
T ss_dssp             HHHHHHHHHTTCCEEEEEECHHHHSCS----STTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             HHHHHHHHHCCCCEEEecccHHHcCCC----CCCCCcCHHHHHHHHHHHHHHHHCCCEEEEecccc
Confidence            67889999999999998552  21220    012455554   48999999999999999766543

>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1

Probab=93.54  E-value=0.14  Score=43.11  Aligned_cols=70  Identities=10%  Similarity=0.005  Sum_probs=47.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC-C-----CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG-F-----DNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~-~-----~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      .=+...|.+-+|.|+.+|+|.++|-  ++......|+ .     .+..+=|.+|.+++|+-|.++||.||=-+ .+.|+
T Consensus        41 ~Gdl~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~aH~~Gi~VilD~-V~NH~  118 (570)
T 1m53_A           41 IGDIRGIIEKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDV-VINHT  118 (570)
T ss_dssp             SCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEE-CCSBC
T ss_pred             ccCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE-ecccc
Confidence            3467778888899999999998762  2221111222 1     12223489999999999999999998655 34444

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=93.51  E-value=0.12  Score=44.14  Aligned_cols=67  Identities=12%  Similarity=0.097  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      ++..|.+-||.|+.+|+|+++|-  ++.. .+.|+      ..++.+=|.+|.|++|+-|.++||.||=-+ .+.|+
T Consensus       237 dl~Gi~~kLdYLk~LGvt~I~L~Pif~s~-~~~GYd~~dy~~idp~~Gt~~df~~LV~~aH~~GI~VIlD~-V~NHt  311 (645)
T 4aef_A          237 DLIGIKEKIDHLVNLGINAIYLTPIFSSL-TYHGYDIVDYFHVARRLGGDRAFVDLLSELKRFDIKVILDG-VFHHT  311 (645)
T ss_dssp             CHHHHHHTHHHHHHHTCCEEEECCCEEES-STTCSSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEEE-CCSBC
T ss_pred             CHHHHHHhhHHHHHcCCCEEEECCCCCCC-CCCCcCccCCCccCcccCCHHHHHHHHHHhhhcCCEEEEEe-ccccc
Confidence            56678888999999999998762  1211 12233      112334489999999999999999998554 45664

>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}

Probab=93.48  E-value=0.22  Score=39.81  Aligned_cols=56  Identities=18%  Similarity=0.215  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2348          24 TYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPL   86 (131)
Q Consensus        24 ~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~   86 (131)
                      +.+.+.|+.|+.+|+|.+++.+.+.-+|    ..  . ..+.+++++++|.++||-||=.+-.
T Consensus        54 ~~~~~~i~~lk~~G~N~VRip~~~~~~~----~~--~-~l~~ld~~v~~a~~~GiyVIlDlH~  109 (345)
T 3jug_A           54 DTASTAIPAIAEQGANTIRIVLSDGGQW----EK--D-DIDTVREVIELAEQNKMVAVVEVHD  109 (345)
T ss_dssp             GGHHHHHHHHHHTTCSEEEEEECCSSSS----CC--C-CHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred             hHHHHHHHHHHHcCCCEEEEEecCCCcc----CH--H-HHHHHHHHHHHHHHCCCEEEEEecc
Confidence            3456789999999999999987432122    11  1 3789999999999999999965543

>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius}

Probab=93.47  E-value=0.43  Score=38.05  Aligned_cols=76  Identities=11%  Similarity=-0.050  Sum_probs=51.6

Q ss_pred             CCceeEEee--cCCCCCCHHHHHHHHHHHHHcCCCEEEEEe--eccCCCCCC--CCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2348           7 FKEVLVHLD--LKGAPPSLTYLKEILPILAYTGATSLLIEW--EDTLPYSLG--FDNTNPFRETEIFIILAAAESNGLAS   80 (131)
Q Consensus         7 f~~Rg~mlD--~~~~~~~~~~lk~~i~~la~~g~n~~~l~~--ed~~p~~~~--~~~~~~YT~eeikeiv~yA~~~~Iev   80 (131)
                      ..-||+-+-  .+|...+.+.....++.|+..|+|.++|-.  ...-+..+.  +.+++-=|.+++.++++.|+++|+.|
T Consensus        34 ~~i~Gis~~~~~~~~~~~~~~~~~~l~~lk~~g~N~VrL~v~~~~~~~~~~~~~~~~~~t~~~~~v~~~~~~Ak~~GL~V  113 (343)
T 3civ_A           34 GFIRGMTFGFVGQHGTWGTDEARASMRALAEQPFNWVTLAFAGLMEHPGDPAIAYGPPVTVSDDEIASMAELAHALGLKV  113 (343)
T ss_dssp             CCEEEEEESTTCBTTGGGSHHHHHHHHHHHHSSCSEEEEEEEEEESSTTCCCCBCSTTTBCCHHHHHHHHHHHHHTTCEE
T ss_pred             cceeeEEeccccCCCCcCchhHHHHHHHHHHcCCCEEEEEeeecCCCCCCCcccccCCCCCCHHHHHHHHHHHHHCCCEE
Confidence            346777763  244545556668999999999999988743  211122222  22222348999999999999999999


Q ss_pred             ee
Q psy2348          81 IP   82 (131)
Q Consensus        81 IP   82 (131)
                      +-
T Consensus       114 ~l  115 (343)
T 3civ_A          114 CL  115 (343)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*

Probab=93.47  E-value=0.16  Score=40.18  Aligned_cols=51  Identities=18%  Similarity=0.096  Sum_probs=42.6

Q ss_pred             HHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          28 EILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        28 ~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      ..+..|+..|+|.+++.+- .-|+      +|.++.+.+.++++.|++.|+.|+-.+-
T Consensus        31 d~~~ilk~~G~N~VRi~~w-~~P~------~g~~~~~~~~~~~~~A~~~GlkV~ld~H   81 (332)
T 1hjs_A           31 PLENILAANGVNTVRQRVW-VNPA------DGNYNLDYNIAIAKRAKAAGLGVYIDFH   81 (332)
T ss_dssp             CHHHHHHHTTCCEEEEEEC-SSCT------TCTTSHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             cHHHHHHHCCCCEEEEeee-eCCC------CCcCCHHHHHHHHHHHHHCCCEEEEEec
Confidence            4688999999999999852 2244      4688999999999999999999998763

>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*

Probab=93.46  E-value=0.24  Score=43.34  Aligned_cols=108  Identities=10%  Similarity=0.040  Sum_probs=65.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEE--eeccC----CCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeE----eeccCCcc
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIE--WEDTL----PYSLG-FDNTNPFRETEIFIILAAAESNGLAS----IPLVPLYS   88 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~--~ed~~----p~~~~-~~~~~~YT~eeikeiv~yA~~~~Iev----IP~i~~~G   88 (131)
                      =++-+.++++++.++.+|+..+.|-  |-...    .--|+ ..+...+- .-+|.+++|++++|+..    -|++-+++
T Consensus       342 d~~e~~i~~~ad~aa~lG~e~fviDDGWf~~r~~d~~~lGdW~~d~~kFP-~Glk~Lad~vh~~GmkfGLW~epe~v~~~  420 (729)
T 4fnq_A          342 DFNEEKLVNIAKTEAELGIELFVLDDGWFGKRDDDRRSLGDWIVNRRKLP-NGLDGLAKQVNELGMQFGLWVEPEMVSPN  420 (729)
T ss_dssp             CCCHHHHHHHHHHHHHHTCCEEEECSCCBTTCCSTTSCTTCCSBCTTTCT-THHHHHHHHHHHTTCEEEEEECTTEECSS
T ss_pred             cCCHHHHHHHHHHHHhcCccEEEEcceeecCCCCCcccCCcEEEChhhcC-ccHHHHHHHHHHCCCEEEEEeeccccCCC
Confidence            3688999999999999999987772  21000    00011 11111121 25999999999999875    57765554


Q ss_pred             hHHHHhcccccccccc-----cCCCCceecCCChhHHHHHHHHHhh
Q psy2348          89 DMDFVLKVKEFAKMRQ-----NFNDTRFICPNARSSLDLVFKMIGR  129 (131)
Q Consensus        89 H~~~~L~~p~~~~l~e-----~~~~~~~lcp~~~~t~~f~~~ll~e  129 (131)
                      - ...=+||++.-...     ......+||+++|++.+.+.+.++.
T Consensus       421 S-~l~~~hPdw~~~~~~~~~~~~r~q~~LD~~~P~v~~y~~~~i~~  465 (729)
T 4fnq_A          421 S-ELYRKHPDWCLHVPNRPRSEGRNQLVLDYSREDVCDYIIETISN  465 (729)
T ss_dssp             S-HHHHHCGGGBCCCTTSCCCCBTTBEEBCTTSHHHHHHHHHHHHH
T ss_pred             c-HHHHhCchheeccCccCCccCCccccccCCChhHHHHHHHHHHH
Confidence            1 12223444322111     1122358999999999998776654

>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1

Probab=93.40  E-value=0.26  Score=40.84  Aligned_cols=67  Identities=16%  Similarity=0.129  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEE--eeccCC-CCCC-----C----------CCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          23 LTYLKEILPILAYTGATSLLIE--WEDTLP-YSLG-----F----------DNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~--~ed~~p-~~~~-----~----------~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      ...|.+-+|.|+.+|+|.++|-  ++...+ +.|+     .          .+..+=|.+|.|++|+-|.++||.||=-+
T Consensus        23 ~~gi~~~LdyLk~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~l~~f~~~~~idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~  102 (515)
T 1hvx_A           23 WTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADV  102 (515)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCcccCCCCCCCCcCeecccccccccccCccCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence            6677788899999999998773  232111 1122     1          22334589999999999999999998554


Q ss_pred             CCcchH
Q psy2348          85 PLYSDM   90 (131)
Q Consensus        85 ~~~GH~   90 (131)
                       .+.|+
T Consensus       103 -V~NH~  107 (515)
T 1hvx_A          103 -VFDHK  107 (515)
T ss_dssp             -CCSEE
T ss_pred             -ecCCc
Confidence             45565

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=93.33  E-value=0.16  Score=43.24  Aligned_cols=108  Identities=15%  Similarity=0.039  Sum_probs=64.3

Q ss_pred             CCCHHHHHH-HHHHHHHcCCCEEEEE--eeccC-CCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2348          20 PPSLTYLKE-ILPILAYTGATSLLIE--WEDTL-PYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD   89 (131)
Q Consensus        20 ~~~~~~lk~-~i~~la~~g~n~~~l~--~ed~~-p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH   89 (131)
                      +-+...+.+ +++.|+.+|+|.++|-  ++... .+.|+      ..++.+=|.+|.|++|+-|.++||.||--+ .+.|
T Consensus       151 ~g~~~~i~~~ll~yl~~lGv~~i~l~Pi~~~~~~~~~GY~~~~y~~~~~~~Gt~~~~~~lv~~~H~~Gi~VilD~-V~NH  229 (617)
T 1m7x_A          151 WLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDW-VPGH  229 (617)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEEE-CTTS
T ss_pred             ccCHHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcccccCCccCccCCCHHHHHHHHHHHHHCCCEEEEEE-ecCc
Confidence            446666655 4699999999998762  22111 01222      123334579999999999999999998765 3556


Q ss_pred             HHH---Hhc----ccccccc--cc--cC-CCCceecCCChhHHHHHHHHHh
Q psy2348          90 MDF---VLK----VKEFAKM--RQ--NF-NDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        90 ~~~---~L~----~p~~~~l--~e--~~-~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      +..   .+.    .+-|...  +.  .+ -....|+..+|++.+++.+++.
T Consensus       230 ~~~~~~~~~~~d~~~~y~~~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~~~  280 (617)
T 1m7x_A          230 FPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNAL  280 (617)
T ss_dssp             CCCSTTSSTTGGGSCSSBCC-----------CCCBCTTSHHHHHHHHHHHH
T ss_pred             ccCccchhhhcCCCccccccCcccCCcCCCCCceecCCCHHHHHHHHHHHH
Confidence            521   111    1112110  00  00 0112478899999999888764

>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A*

Probab=93.25  E-value=0.14  Score=39.41  Aligned_cols=63  Identities=13%  Similarity=0.094  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEEe--ec-cCCCCCC-----CCCC-CCC-----CHHHHHHHHHHHHHcCCeEeecc
Q psy2348          22 SLTYLKEILPILAYTGATSLLIEW--ED-TLPYSLG-----FDNT-NPF-----RETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~~--ed-~~p~~~~-----~~~~-~~Y-----T~eeikeiv~yA~~~~IevIP~i   84 (131)
                      +.+.+++.++.|+.+|+|.+++..  +. ..|-.+.     ..++ ..|     +.+.+.++++.|+++||.||..+
T Consensus        34 ~~~~~~~~l~~~k~~G~N~vR~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~i~~a~~~Gi~vild~  110 (344)
T 1qnr_A           34 NHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPF  110 (344)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEECCCCCEESSCCSTTCCCSEECCTTCCEECCSTTTTHHHHHHHHHHHHHTCEEEEES
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCCceeeeecCCCCcccccCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence            688999999999999999999842  21 1122210     1111 113     37889999999999999999887

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=93.22  E-value=0.73  Score=41.29  Aligned_cols=106  Identities=12%  Similarity=0.097  Sum_probs=65.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEE--ee----c-------------cCCC-CCC------CCCCCCC-C--------HHH
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIE--WE----D-------------TLPY-SLG------FDNTNPF-R--------ETE   65 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~--~e----d-------------~~p~-~~~------~~~~~~Y-T--------~ee   65 (131)
                      =+...+.+-|+.|+.+|+|.++|-  ++    +             .-.| .|+      ... +.| |        .+|
T Consensus       293 Gt~~gl~~~L~yLk~LGvtaV~L~Pi~~~~~~~e~~~~~~~~~~~~~~~ynwGY~~~~~~a~~-~~yGt~p~~~~~~~~e  371 (877)
T 3faw_A          293 GTFAAFSEKLDYLQKLGVTHIQLLPVLSYFYVNEMDKSRSTAYTSSDNNYNWGYDPQSYFALS-GMYSEKPKDPSARIAE  371 (877)
T ss_dssp             TSHHHHGGGHHHHHHHTCSEEEESCCBCBSSCBTTCCCCCCSCCSSSCSCCCSCSBSCSSSBC-STTCSCTTSTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEcchhcccccccccccccccccCCCCCCccCcCcCcccccc-ccccCCCCCcchHHHH
Confidence            456677788899999999998761  11    0             0011 222      111 122 2        699


Q ss_pred             HHHHHHHHHHcCCeEeeccCCcchHH---HHh-ccccccccc-ccCC-----CCceecCCChhHHHHHHHHHh
Q psy2348          66 IFIILAAAESNGLASIPLVPLYSDMD---FVL-KVKEFAKMR-QNFN-----DTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        66 ikeiv~yA~~~~IevIP~i~~~GH~~---~~L-~~p~~~~l~-e~~~-----~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      .|++|+-|.++||+||=-+ .+.|+.   .+. .+|.|-... .++.     ..+.++..+|.+.+++.+.+.
T Consensus       372 fk~lV~~~H~~GI~VILDv-V~NH~a~~~~~~~~~p~yy~~~~~dg~~~~~~~g~~ln~~~p~Vr~~i~d~l~  443 (877)
T 3faw_A          372 LKQLIHDIHKRGMGVILDV-VYNHTAKTYLFEDIEPNYYHFMNEDGSPRESFGGGRLGTTHAMSRRVLVDSIK  443 (877)
T ss_dssp             HHHHHHHHHHTTCEEEEEE-CTTCCSCTHHHHTTSTTTSBCBCTTSCBCEETTEECBCTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCEEEEEE-eeccccCccccccCCCceeeeeCCCCCeeccCCCcccccCCHHHHHHHHHHHH
Confidence            9999999999999999765 233332   122 256654432 1111     124578888999888887764

>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP}

Probab=93.15  E-value=0.18  Score=42.31  Aligned_cols=65  Identities=20%  Similarity=0.097  Sum_probs=44.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEE--eecc---CCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIE--WEDT---LPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~--~ed~---~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      .=+...|.+-+|.|+.+|+|.++|-  ++..   .+|.-.   -.+..+=|.+|+|++++-|.++||.||=-+
T Consensus        27 ~Gd~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~~gY~~~dy~~id~~~Gt~~d~~~lv~~~h~~Gi~vilD~   99 (555)
T 2ze0_A           27 IGDLRGIIEKLDYLVELGVDIVWICPIYRSPNADNGYDISDYYAIMDEFGTMDDFDELLAQAHRRGLKVILDL   99 (555)
T ss_dssp             SCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence            3467888888999999999998762  2211   122111   112223389999999999999999998443

>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A*

Probab=93.08  E-value=0.24  Score=42.40  Aligned_cols=63  Identities=17%  Similarity=0.089  Sum_probs=43.7

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccC--CCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTL--PYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~--p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      +...|.+.++.|+.+|+|+++|-  ++...  .+.|+      ..++.+=|.+|++++++-|.++||.||=-+
T Consensus       111 dl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~~~GY~v~dy~~vdp~~Gt~~d~~~Lv~~ah~~GI~VilD~  183 (628)
T 1g5a_A          111 DLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAGISAVVDF  183 (628)
T ss_dssp             SHHHHHTTHHHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBCTTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCcCCcccCCcCccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence            46777788899999999998762  11100  01222      112334489999999999999999998444

>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A

Probab=92.98  E-value=0.22  Score=42.77  Aligned_cols=63  Identities=11%  Similarity=0.036  Sum_probs=43.4

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccC--CCCCC-C-----CCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTL--PYSLG-F-----DNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~--p~~~~-~-----~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      +...|.+.++.|+.+|+|.++|-  ++...  .+.|+ .     .++.+=|.+|++++++-|.++||.||=-+
T Consensus       104 dl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~~~GY~~~dy~~vdp~~Gt~~df~~Lv~~aH~~GI~VilD~  176 (644)
T 3czg_A          104 TLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCADF  176 (644)
T ss_dssp             SHHHHHHTHHHHHHHTCCEEEECCCBCBCSSCCTTTTSBSCTTSBCGGGCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence            46777778899999999998762  11110  11222 1     12223389999999999999999998544

>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A*

Probab=92.94  E-value=0.18  Score=42.22  Aligned_cols=69  Identities=13%  Similarity=0.128  Sum_probs=46.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEE--eecc---CCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIE--WEDT---LPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~--~ed~---~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      =+...|.+-+|.|+.+|+|+++|-  ++..   .+|.-.   ..+..+=|.+|.+++++-|.++||.||=-+ .+.|+
T Consensus        28 Gdl~gi~~~Ldyl~~LGv~~I~l~Pi~~~~~~~~GY~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~VilD~-V~NH~  104 (543)
T 2zic_A           28 GDLKGITSKLDYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRGIKIIMDL-VVNHT  104 (543)
T ss_dssp             CCHHHHHHTHHHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHTTTCEEEEEE-CCSBC
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE-ecCcc
Confidence            467778888899999999998762  2211   122111   112223489999999999999999998655 33443

>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*

Probab=92.91  E-value=0.14  Score=43.76  Aligned_cols=63  Identities=14%  Similarity=0.041  Sum_probs=43.0

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccCC------CCCC------CCCCCCCC--------HHHHHHHHHHHHHcCCe
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTLP------YSLG------FDNTNPFR--------ETEIFIILAAAESNGLA   79 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~p------~~~~------~~~~~~YT--------~eeikeiv~yA~~~~Ie   79 (131)
                      +...+.+.++.|+.+|+|.++|-  ++....      +.|+      ..++.+=|        .+|+|++|+.|.++||+
T Consensus       118 ~~~g~~~~l~~l~~lG~~~v~l~Pi~~~~~~~~~g~~~~gY~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~H~~Gi~  197 (637)
T 1gjw_A          118 TFFKMMLLLPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILGIR  197 (637)
T ss_dssp             CHHHHHHTHHHHHHHTCCEEEECCCEEECCSSCSSSSCCTTSEEEEEEECGGGSCGGGTTSCHHHHHHHHHHHHHHTTCE
T ss_pred             cHHHHHHHHHHHHHcCCCEEEeCCCeecccccccCCCCCccCCCCcCCcCcccCCCcccccchHHHHHHHHHHHHHCCCE
Confidence            56778889999999999998762  111110      1122      11121223        69999999999999999


Q ss_pred             Eeecc
Q psy2348          80 SIPLV   84 (131)
Q Consensus        80 vIP~i   84 (131)
                      ||-.+
T Consensus       198 VilD~  202 (637)
T 1gjw_A          198 VILDF  202 (637)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98765

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=92.90  E-value=0.14  Score=44.31  Aligned_cols=68  Identities=9%  Similarity=0.047  Sum_probs=47.7

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~   91 (131)
                      +...|.+-+|.|+.+|+|+++|-  ++... +.|+      ..++.+=|.+|.|++++-|.++||.||=-+ .+.|+.
T Consensus       263 dl~Gi~~kLdyLk~LGvt~IwL~Pi~~s~~-~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~GikVilD~-V~NHts  338 (696)
T 4aee_A          263 DLAGIMKHIDHLEDLGVETIYLTPIFSSTS-YHRYDTIDYKSIDKYLGTMEDFEKLVQVLHSRKIKIVLDI-TMHHTN  338 (696)
T ss_dssp             CHHHHHTTHHHHHHHTCCEEEECCCEEESS-SSCCSEEEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEE-CSSEEC
T ss_pred             CHHHHHHHhHHHHHcCCCEEEECCcccCCC-CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEec-cccccC
Confidence            57788888999999999998762  22111 1222      112234489999999999999999999655 445553

>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1

Probab=92.86  E-value=0.17  Score=42.43  Aligned_cols=69  Identities=9%  Similarity=-0.051  Sum_probs=47.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC-C-----CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG-F-----DNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~-~-----~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      =+...|.+-+|.|+.+|+|+++|-  ++......|+ .     .++.+=|.+|.+++|+-|.++||.||=-+ .+.|+
T Consensus        28 Gdl~gi~~~ldyl~~LGv~~I~l~Pi~~~~~~~~GYd~~dy~~id~~~Gt~~df~~lv~~~h~~Gi~VilD~-V~NH~  104 (558)
T 1uok_A           28 GDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMKLMMDL-VVNHT  104 (558)
T ss_dssp             CCHHHHHTTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEE-CCSBC
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE-ecccc
Confidence            467778888899999999998762  2211101222 1     12233489999999999999999998655 34444

>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1

Probab=92.84  E-value=0.16  Score=41.60  Aligned_cols=68  Identities=18%  Similarity=0.152  Sum_probs=47.0

Q ss_pred             CCHHHHHHHHHHH--------HHcCCCEEEEE--eeccCCCCCC-CC-----CCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          21 PSLTYLKEILPIL--------AYTGATSLLIE--WEDTLPYSLG-FD-----NTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        21 ~~~~~lk~~i~~l--------a~~g~n~~~l~--~ed~~p~~~~-~~-----~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      =+...+.+-+|.|        +.+|+|+++|-  ++. -.+.|+ ..     ++.+=|.+|+|++|+-|.++||.||=-+
T Consensus        24 Gdl~gi~~~LdyL~~~~~~~~~~LGv~~I~L~Pi~~~-~~~~GYd~~dy~~idp~~Gt~~d~~~Lv~~aH~~Gi~VilD~  102 (488)
T 1wza_A           24 GDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKS-PSYHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDL  102 (488)
T ss_dssp             CCHHHHHHTHHHHCCSCTTCCSSCCCSEEEECCCEEC-SSSSCCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCHHHHHHhhhhhhccccchhhhcCccEEEECCcccC-CCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence            4677788889999        99999998762  121 112333 11     1223389999999999999999998655


Q ss_pred             CCcchH
Q psy2348          85 PLYSDM   90 (131)
Q Consensus        85 ~~~GH~   90 (131)
                       .+.|+
T Consensus       103 -V~NH~  107 (488)
T 1wza_A          103 -PINHT  107 (488)
T ss_dssp             -CCSBC
T ss_pred             -ccccc
Confidence             34444

>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*

Probab=92.80  E-value=0.24  Score=40.30  Aligned_cols=62  Identities=8%  Similarity=-0.009  Sum_probs=41.2

Q ss_pred             HHHHH-HHHHHHHHcCCCEEEEE--eec--cCCC-CCC-----CCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          23 LTYLK-EILPILAYTGATSLLIE--WED--TLPY-SLG-----FDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        23 ~~~lk-~~i~~la~~g~n~~~l~--~ed--~~p~-~~~-----~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      ...|. +++|.|+.+|+|.++|-  ++.  .-++ .|+     -.+..+=|.+|.|++|+-|.++||.||=-+
T Consensus        13 ~~gi~~~lldyL~~LGv~~I~l~Pi~~~~~~~~~~~gY~~~~y~idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~   85 (448)
T 1g94_A           13 WQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVDIYVDT   85 (448)
T ss_dssp             HHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCcccccccccccCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence            55565 56799999999998772  111  0000 121     112334489999999999999999998543

>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A

Probab=92.66  E-value=0.15  Score=41.45  Aligned_cols=72  Identities=14%  Similarity=0.031  Sum_probs=50.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEE--eec-cCCCCCC---CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348          19 APPSLTYLKEILPILAYTGATSLLIE--WED-TLPYSLG---FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        19 ~~~~~~~lk~~i~~la~~g~n~~~l~--~ed-~~p~~~~---~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~   91 (131)
                      +.=+...+.+-+|.|+.+|+|.++|-  ++. +..|...   -.++.+=|.+|++++++-|.++||.||=-+ .+.|++
T Consensus        31 g~Gdl~gi~~~Ldyl~~LGv~~i~l~Pi~~~~~~~y~~~dy~~idp~~Gt~~d~~~lv~~ah~~Gi~vilD~-V~NH~s  108 (424)
T 2dh2_A           31 GAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQKDDVAQTDLLQIDPNFGSKEDFDSLLQSAKKKSIRVILDL-TPNYRG  108 (424)
T ss_dssp             TCCSHHHHHTTHHHHHHTTCSEEEECCCEEECTTCSTTEEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEC-CTTTTS
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCcccccccCccCCCHHHHHHHHHHHHHCCCEEEEEE-CCCcCC
Confidence            34477888888999999999998762  111 0011110   112223389999999999999999999766 467776

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=92.53  E-value=0.28  Score=41.78  Aligned_cols=68  Identities=10%  Similarity=0.044  Sum_probs=47.0

Q ss_pred             CHHHHHHHHHHHHH-cCCCEEEEE--eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcC--C--eEeeccCCcc
Q psy2348          22 SLTYLKEILPILAY-TGATSLLIE--WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNG--L--ASIPLVPLYS   88 (131)
Q Consensus        22 ~~~~lk~~i~~la~-~g~n~~~l~--~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~--I--evIP~i~~~G   88 (131)
                      +...|.+-||.|+. +|+|.++|-  ++... +.|+      ..+..+=|.+|.|++|+-|.++|  |  .||=-+ .+.
T Consensus       189 ~~~gi~~~LdyLk~~LGvt~I~L~Pi~~~~~-~~GYd~~dy~~id~~~Gt~~dfk~LV~~~H~~G~~I~~~VIlD~-V~N  266 (637)
T 1ji1_A          189 DLAGIDQKLGYIKKTLGANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILDG-VFN  266 (637)
T ss_dssp             CHHHHHHTHHHHHTTTCCCEEEESCCEECSS-SSCCSCSEEEEECTTTCCHHHHHHHHHHHHCSSSSSCCEEEEEE-CCS
T ss_pred             CHHHHHHhHHHHHhccCCCEEEECCCccCCC-CCCcCccchhhhccccCCHHHHHHHHHHHHhCCCCccceEEEEE-Ccc
Confidence            67778888899999 999998762  12111 2233      12333458999999999999999  9  887544 344


Q ss_pred             hHH
Q psy2348          89 DMD   91 (131)
Q Consensus        89 H~~   91 (131)
                      |+.
T Consensus       267 H~~  269 (637)
T 1ji1_A          267 HTG  269 (637)
T ss_dssp             BCC
T ss_pred             cCC
Confidence            543

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*

Probab=92.51  E-value=0.23  Score=42.72  Aligned_cols=70  Identities=17%  Similarity=0.126  Sum_probs=48.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEE--eecc--------CCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIE--WEDT--------LPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~--~ed~--------~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      =+...|.+-+|.|+.+|+|.++|-  ++..        ..|.|+      ..++.+=|.+|.|++++-|.++||.||=-+
T Consensus        49 Gdl~gi~~kLdyLk~LGv~aIwL~Pi~~~~~~~~~~g~~~~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~GikVilD~  128 (686)
T 1qho_A           49 GDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDF  128 (686)
T ss_dssp             CCHHHHHHTHHHHHHHTCCEEEECCCEEECSSCSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCHHHHHHhhHHHHhcCCCEEEECccccCCcccccCCCCCcCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence            357788888999999999998862  2210        112233      113445589999999999999999998654


Q ss_pred             CCcchHH
Q psy2348          85 PLYSDMD   91 (131)
Q Consensus        85 ~~~GH~~   91 (131)
                       .+-|+.
T Consensus       129 -V~NHts  134 (686)
T 1qho_A          129 -VPNHST  134 (686)
T ss_dssp             -CTTEEE
T ss_pred             -cccccc
Confidence             344543

>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*

Probab=92.46  E-value=0.4  Score=38.91  Aligned_cols=68  Identities=12%  Similarity=0.104  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEE--eeccCC--CCCC----C-----------CCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348          23 LTYLKEILPILAYTGATSLLIE--WEDTLP--YSLG----F-----------DNTNPFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~--~ed~~p--~~~~----~-----------~~~~~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      ...|.+-+|.|+.+|+|.++|-  ++....  +.|+    .           .+..+=|.+|.|++++-|.++||.||=-
T Consensus        27 ~~gi~~~Ldyl~~lGvt~I~l~Pi~~~~~~~~~~gY~~~dy~~lg~~~~~~~id~~~Gt~~df~~lv~~~H~~Gi~VilD  106 (435)
T 1mxg_A           27 WDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIAD  106 (435)
T ss_dssp             HHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCCcCcccccccccccccCcCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence            5667788899999999998762  221110  1122    1           1122338999999999999999999865


Q ss_pred             cCCcchHH
Q psy2348          84 VPLYSDMD   91 (131)
Q Consensus        84 i~~~GH~~   91 (131)
                      + .+.|+.
T Consensus       107 ~-V~NH~~  113 (435)
T 1mxg_A          107 V-VINHRA  113 (435)
T ss_dssp             E-CCSBCC
T ss_pred             E-Cccccc
Confidence            5 455554

>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A

Probab=92.25  E-value=0.18  Score=40.76  Aligned_cols=116  Identities=19%  Similarity=0.080  Sum_probs=69.6

Q ss_pred             eeEEeec-CCCCCCHHHHHHHHHHHHHcCCCEEEEE----e-eccC-------CCCCC------CCCCCCCCHHHHHHHH
Q psy2348          10 VLVHLDL-KGAPPSLTYLKEILPILAYTGATSLLIE----W-EDTL-------PYSLG------FDNTNPFRETEIFIIL   70 (131)
Q Consensus        10 Rg~mlD~-~~~~~~~~~lk~~i~~la~~g~n~~~l~----~-ed~~-------p~~~~------~~~~~~YT~eeikeiv   70 (131)
                      .++++.+ .+   +...|.+-++.|+.+|+|.++|-    . +...       .|.|+      ..+..+=|.+|.|++|
T Consensus         5 ~~~~~q~f~~---~~~~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~~~~~gY~~~~y~~~~~~~G~~~d~~~lv   81 (422)
T 1ua7_A            5 SGTILHAWNW---SFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEFKEMC   81 (422)
T ss_dssp             TSCEEECTTB---CHHHHHHTHHHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEETTTEEHHHHHHHH
T ss_pred             CcEEEEEecC---CHHHHHHHHHHHHHcCCCEEEeCCccccccCCcCcCccCCccccccceeeeccCCCCCCHHHHHHHH
Confidence            3445555 33   56778888899999999998762    1 1110       02222      1112223899999999


Q ss_pred             HHHHHcCCeEeeccCCcchHHH-------Hh-ccccccccc-ccCCC-------------CceecCCChhHHHHHHHHHh
Q psy2348          71 AAAESNGLASIPLVPLYSDMDF-------VL-KVKEFAKMR-QNFND-------------TRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        71 ~yA~~~~IevIP~i~~~GH~~~-------~L-~~p~~~~l~-e~~~~-------------~~~lcp~~~~t~~f~~~ll~  128 (131)
                      +-|.++||.||--+ .+.|+..       .+ .++.|-+-. ....+             ...|+-.+|++.+++.+.+.
T Consensus        82 ~~~h~~Gi~VilD~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~  160 (422)
T 1ua7_A           82 AAAEEYGIKVIVDA-VINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLE  160 (422)
T ss_dssp             HHHHTTTCEEEEEE-CCSBCCSCTTTSCHHHHTSTTCEEECCBCCCTTCHHHHHHSBBTTBCEECTTSHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEEe-ccCcccCCccccCccccCCcccccCCCCCCCcCchhcccccccCCCCccccCCHHHHHHHHHHHH
Confidence            99999999998665 3455421       11 122221110 00001             13688899999999988775


Q ss_pred             h
Q psy2348         129 R  129 (131)
Q Consensus       129 e  129 (131)
                      .
T Consensus       161 ~  161 (422)
T 1ua7_A          161 R  161 (422)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3

Probab=92.15  E-value=0.45  Score=38.56  Aligned_cols=57  Identities=12%  Similarity=0.025  Sum_probs=39.2

Q ss_pred             HHHHHHHHHcCCCEEEEEee--ccCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          27 KEILPILAYTGATSLLIEWE--DTLPYSLG-FDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        27 k~~i~~la~~g~n~~~l~~e--d~~p~~~~-~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      ++-++.|+.+|+|.+++-+.  ...|..+. .. .+ -..+-++++|++|+++||.||-.+-
T Consensus        76 e~d~~~i~~~G~N~VRipi~~~~~~~~~~~py~-~~-~~l~~ld~vv~~a~~~Gi~VilDlH  135 (408)
T 1h4p_A           76 EQDFANIASQGFNLVRIPIGYWAFQILDDDPYV-SG-LQESYLDQAIGWARNNSLKVWVDLH  135 (408)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEGGGTCCCTTCCCC-CS-SHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHCCCCEEEccCCHHHcccCCCCCCc-cc-cHHHHHHHHHHHHHHCCCEEEEECC
Confidence            56778899999999998653  21122221 00 01 2467899999999999999996554

>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A

Probab=92.12  E-value=0.5  Score=38.45  Aligned_cols=53  Identities=11%  Similarity=0.058  Sum_probs=38.3

Q ss_pred             HHHHHHHHHcCCCEEEEEeec-cC-CCCCCCCCCCCC---CHHHHHHHHHHHHHcCCeEeecc
Q psy2348          27 KEILPILAYTGATSLLIEWED-TL-PYSLGFDNTNPF---RETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        27 k~~i~~la~~g~n~~~l~~ed-~~-p~~~~~~~~~~Y---T~eeikeiv~yA~~~~IevIP~i   84 (131)
                      ++-|+.|+.+|+|.++|-+.- .+ |..+     ..|   ..+-++++|++|+++||.||-.+
T Consensus        76 e~D~~~ik~~G~N~VRipi~~~~~~~~~~-----~py~~~~~~~ld~vV~~a~~~Gl~VILDl  133 (399)
T 3n9k_A           76 EQDFKQISNLGLNFVRIPIGYWAFQLLDN-----DPYVQGQVQYLEKALGWARKNNIRVWIDL  133 (399)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEGGGTCCCTT-----CCCCCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHcCCCEEEEcccHHHccCCCC-----CccchhHHHHHHHHHHHHHHCCCEEEEEe
Confidence            345678999999999986531 11 1112     233   47899999999999999998765

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=92.05  E-value=0.35  Score=42.50  Aligned_cols=107  Identities=12%  Similarity=0.108  Sum_probs=64.8

Q ss_pred             CCHHHHHH-HHHHHHHcCCCEEEEE--eeccC-CCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          21 PSLTYLKE-ILPILAYTGATSLLIE--WEDTL-PYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        21 ~~~~~lk~-~i~~la~~g~n~~~l~--~ed~~-p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      -+...|.+ .++.|+.+|+|.++|-  ++..+ .+.|+      ..+..+=|.+|.|++|+.|.++||.||=-+ .+.|+
T Consensus       198 Gt~~~l~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~dy~a~~~~~Gt~~df~~lv~~~H~~Gi~VilD~-V~NH~  276 (755)
T 3aml_A          198 STYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDV-VHSHA  276 (755)
T ss_dssp             CCHHHHHHHTHHHHHHTTCCEEEEESCEECSCGGGTTCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEE-CCSCB
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEECchhcCCCCCCCCCccCCCCccCCCCCCHHHHHHHHHHHHHCCCEEEEEE-ecccc
Confidence            46666654 7999999999998773  22211 12233      112223489999999999999999998665 35554


Q ss_pred             HH----Hhc--------ccccccccc----cCCCCceecCCChhHHHHHHHHHh
Q psy2348          91 DF----VLK--------VKEFAKMRQ----NFNDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        91 ~~----~L~--------~p~~~~l~e----~~~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      ..    .++        ++.|-+...    ..-....|+-.+|++.+++.+.+.
T Consensus       277 ~~~~~~g~~~fd~~~~~~~~yf~~~~~g~~~~w~~~~lN~~~p~V~~~l~~~l~  330 (755)
T 3aml_A          277 SNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLR  330 (755)
T ss_dssp             CCCTTTSGGGGCSSCCGGGSSBCCGGGGEETTTTEECBCTTSHHHHHHHHHHHH
T ss_pred             ccccccchhccccCCCCCcceeecCCCCccCCCCCceeccCCHHHHHHHHHHHH
Confidence            21    111        112211100    001123578889999999887764

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=91.90  E-value=0.75  Score=37.09  Aligned_cols=85  Identities=13%  Similarity=0.053  Sum_probs=65.3

Q ss_pred             EEeec-CCCCCCHHHHHHHHHHHHHcCCCEEEEEe--ecc--CCCCCC--CCCCC----------CCCHHHHHHHHHHHH
Q psy2348          12 VHLDL-KGAPPSLTYLKEILPILAYTGATSLLIEW--EDT--LPYSLG--FDNTN----------PFRETEIFIILAAAE   74 (131)
Q Consensus        12 ~mlD~-~~~~~~~~~lk~~i~~la~~g~n~~~l~~--ed~--~p~~~~--~~~~~----------~YT~eeikeiv~yA~   74 (131)
                      ++-.+ ++|.-+++..+++++..+..|++.+.+..  -++  .||.+.  .++++          .++.|+.++|.+||+
T Consensus        22 iIAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~~~  101 (349)
T 2wqp_A           22 IICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVE  101 (349)
T ss_dssp             EEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             EEEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHHHH
Confidence            34444 58999999999999999999999987764  223  243211  11112          479999999999999


Q ss_pred             HcCCeEeeccCCcchHHHHhcc
Q psy2348          75 SNGLASIPLVPLYSDMDFVLKV   96 (131)
Q Consensus        75 ~~~IevIP~i~~~GH~~~~L~~   96 (131)
                      +.||.++=++=-+.+.+.+..+
T Consensus       102 ~~Gi~~~st~~d~~svd~l~~~  123 (349)
T 2wqp_A          102 SKGMIFISTLFSRAAALRLQRM  123 (349)
T ss_dssp             HTTCEEEEEECSHHHHHHHHHH
T ss_pred             HhCCeEEEeeCCHHHHHHHHhc
Confidence            9999999999999999988553

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=91.76  E-value=0.21  Score=34.29  Aligned_cols=58  Identities=7%  Similarity=-0.077  Sum_probs=44.7

Q ss_pred             eecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          14 LDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        14 lD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      .|+.-=+-+.+.+...++.+...|...+++.             .|+..    +++.+.|++.||+|||  +++|=+
T Consensus        59 vDlavi~~p~~~v~~~v~e~~~~g~k~v~~~-------------~G~~~----~e~~~~a~~~Girvv~--nC~gv~  116 (122)
T 3ff4_A           59 VDTVTLYINPQNQLSEYNYILSLKPKRVIFN-------------PGTEN----EELEEILSENGIEPVI--GCTLVM  116 (122)
T ss_dssp             CCEEEECSCHHHHGGGHHHHHHHCCSEEEEC-------------TTCCC----HHHHHHHHHTTCEEEE--SCHHHH
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhcCCCEEEEC-------------CCCCh----HHHHHHHHHcCCeEEC--CcCeEE
Confidence            5776666778889999999999999876551             13332    4899999999999997  887743

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=91.74  E-value=0.5  Score=40.98  Aligned_cols=107  Identities=16%  Similarity=0.154  Sum_probs=64.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEE--eec----cC--------------CC-CCC-----CCCCCCCC---------HHH
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIE--WED----TL--------------PY-SLG-----FDNTNPFR---------ETE   65 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~--~ed----~~--------------p~-~~~-----~~~~~~YT---------~ee   65 (131)
                      =+...|.+-|+.|+.+|+|.++|-  ++.    -+              .| .|+     ..-.+.|.         .+|
T Consensus       177 Gt~~gi~~~L~yLk~LGvt~I~L~Pi~~~~~~~e~~~~~~~~~~~~~~~~~~wGY~~~~~~a~~~~yg~~~~~~~~~~~e  256 (714)
T 2ya0_A          177 GTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAE  256 (714)
T ss_dssp             TSHHHHHTTHHHHHHHTCSEEEESCCBCBSSCBGGGTTSCCCSCCSSSCSCCCSCSBSCSSSBCSTTSSCTTSTTHHHHH
T ss_pred             cCHHHHHHHhHHHHHcCCCEEEECCcccccccCcccccccccccccCcCcCccCCCCccCcccChhhccCCCCccchHHH
Confidence            466777777899999999998762  110    00              01 222     11112232         699


Q ss_pred             HHHHHHHHHHcCCeEeeccCCcchHHHH--hc--ccccccccc-cCC-----CCceecCCChhHHHHHHHHHh
Q psy2348          66 IFIILAAAESNGLASIPLVPLYSDMDFV--LK--VKEFAKMRQ-NFN-----DTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        66 ikeiv~yA~~~~IevIP~i~~~GH~~~~--L~--~p~~~~l~e-~~~-----~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      .|++|+.|.++||+||=-+ .+.|+..-  +.  +|.|-.... .+.     ..+.++..+|.+.+++.+.+.
T Consensus       257 fk~lV~~~H~~Gi~VilDv-V~NH~~~~~~~~~~~~~yy~~~~~~g~~~~~~~~~~l~~~~~~v~~~i~d~l~  328 (714)
T 2ya0_A          257 FKNLINEIHKRGMGAILDV-VYNHTAKVDLFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHHMTKRLLIDSIK  328 (714)
T ss_dssp             HHHHHHHHHHTTCEEEEEE-CTTBCSCHHHHHTTSTTTSBCBCTTCCBCEETTEEBBCTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCEEEEEe-ccCcccCcccccccCCCeeEEeCCCCCCccccCCCCcccCCHHHHHHHHHHHH
Confidence            9999999999999998765 34554321  11  344433321 111     113467778888888777653

>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A

Probab=91.63  E-value=0.36  Score=41.17  Aligned_cols=67  Identities=16%  Similarity=0.023  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEE--eeccCC--CCCC-----C----------CCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348          23 LTYLKEILPILAYTGATSLLIE--WEDTLP--YSLG-----F----------DNTNPFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~--~ed~~p--~~~~-----~----------~~~~~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      ...|.+-+|.|+.+|+|+++|-  ++...+  +.|+     .          .+..+=|.+|.|++++-|.++||.||=-
T Consensus       149 ~~gi~~~LdyLk~LGvtaIwL~Pi~~~~s~~~~~GYd~~dy~~l~e~~q~g~idp~~Gt~~dfk~Lv~~aH~~GI~VilD  228 (599)
T 3bc9_A          149 WNLLAERAPELAEAGFTAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFD  228 (599)
T ss_dssp             HHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSCSEEETTCSSCSCBTTBSSBTTBCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCChhhcccccccccccccCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence            5667788899999999998762  221111  1122     1          1223448999999999999999999865


Q ss_pred             cCCcchH
Q psy2348          84 VPLYSDM   90 (131)
Q Consensus        84 i~~~GH~   90 (131)
                      + .+-|+
T Consensus       229 ~-V~NH~  234 (599)
T 3bc9_A          229 A-VLNHR  234 (599)
T ss_dssp             E-CCSEE
T ss_pred             E-CcCCC
Confidence            4 45554

>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A*

Probab=91.48  E-value=0.52  Score=40.80  Aligned_cols=67  Identities=15%  Similarity=0.086  Sum_probs=49.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEeeccCCC---CCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIEWEDTLPY---SLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~---~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      =+...+.+.++.|+.+|+|+++|-  ..++.   .|+      ..+..+=|.+|++++++-|.++||.||-.+ .+.|+
T Consensus        57 G~~~g~~~~l~yl~~lGv~~i~l~--Pi~~~~~~~gY~~~dy~~i~~~~Gt~~d~~~lv~~~h~~gi~vi~D~-V~NH~  132 (669)
T 3k8k_A           57 GDLNGVTQKLDYLNQLGVKALWLS--PIHPCMSYHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKIYLDY-VMNHT  132 (669)
T ss_dssp             CCHHHHHTTHHHHHTTTCSEEEEC--CCSSBSSTTCCSBSCTTSCCTTTCCHHHHHHHHHHHHHTTCEEEEEE-CCSEE
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEec--ccccCCCCCCCCcccccccccccCCHHHHHHHHHHHHHcCCEEEEEE-CcccC
Confidence            468888999999999999998772  11221   222      112334589999999999999999999776 45555

>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum}

Probab=91.44  E-value=0.43  Score=39.47  Aligned_cols=72  Identities=13%  Similarity=-0.007  Sum_probs=46.8

Q ss_pred             ceeEEeecC-CCCCCHHHHHHHHHHHHHcCCCEEEEEeecc-CCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348           9 EVLVHLDLK-GAPPSLTYLKEILPILAYTGATSLLIEWEDT-LPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus         9 ~Rg~mlD~~-~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~-~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      .||+.+..- ..+++    ++-++.|+.+|+|.+++.+.-. ..|...-.....+..+.++++|++|+++||-||=.+
T Consensus        27 lrGv~~~~~w~~~~~----~~d~~~i~~~G~N~VRipv~~~~~~~~~~~~~~~~~~l~~ld~vv~~a~~~Gl~VIlD~  100 (491)
T 2y8k_A           27 LRGPYTSTEWTAAAP----YDQIARVKELGFNAVHLYAECFDPRYPAPGSKAPGYAVNEIDKIVERTRELGLYLVITI  100 (491)
T ss_dssp             CEEEEEECSSSCCCC----HHHHGGGGGGTCCEEEEEEEECCTTTTSTTCCCTTTTHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             eecccccCCcCCCCC----HHHHHHHHHcCCCEEEECceeecccccCCCccChhHHHHHHHHHHHHHHHCCCEEEEEC
Confidence            678855442 23333    3567888999999999865310 012111011124678999999999999999998554

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A

Probab=91.40  E-value=0.31  Score=41.90  Aligned_cols=68  Identities=15%  Similarity=0.047  Sum_probs=47.5

Q ss_pred             CHHHHHHHHH--HHHHcCCCEEEEE--eec------------cCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCe
Q psy2348          22 SLTYLKEILP--ILAYTGATSLLIE--WED------------TLPYSLG------FDNTNPFRETEIFIILAAAESNGLA   79 (131)
Q Consensus        22 ~~~~lk~~i~--~la~~g~n~~~l~--~ed------------~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~Ie   79 (131)
                      +...|.+-+|  .|+.+|+|.++|-  ++.            ...|.|+      ..++.+=|.+|.|++++-|.++||.
T Consensus        53 dl~gi~~kLd~~yLk~LGvtaIwL~Pi~~~~~~~~~~~g~~g~~~~~GYd~~dy~~idp~~Gt~~dfk~Lv~~aH~~Gik  132 (683)
T 3bmv_A           53 DWQGIINKINDGYLTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAHNIK  132 (683)
T ss_dssp             CHHHHHHHHHTSTTGGGTCCEEEECCCEEECCCCEEETTTEEECSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCE
T ss_pred             CHHHHHHhcCHHHHHHcCCCEEEeCccccCcccccccccccCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCE
Confidence            5777888899  9999999998762  221            0112233      1134455899999999999999999


Q ss_pred             EeeccCCcchH
Q psy2348          80 SIPLVPLYSDM   90 (131)
Q Consensus        80 vIP~i~~~GH~   90 (131)
                      ||=-+ .+-|+
T Consensus       133 VilD~-V~NHt  142 (683)
T 3bmv_A          133 VIIDF-APNHT  142 (683)
T ss_dssp             EEEEE-CTTEE
T ss_pred             EEEEE-ccccc
Confidence            98654 34444

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=91.36  E-value=0.26  Score=43.27  Aligned_cols=107  Identities=9%  Similarity=-0.028  Sum_probs=64.3

Q ss_pred             CCHHHHHH-HHHHHHHcCCCEEEEE--eeccC-CCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          21 PSLTYLKE-ILPILAYTGATSLLIE--WEDTL-PYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        21 ~~~~~lk~-~i~~la~~g~n~~~l~--~ed~~-p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      -+...|.+ +++.|+.+|+|.++|-  ++..+ ...|+      ..+..+=|.+|.|++|+.|.++||.||=-+ .+.|+
T Consensus       260 G~~~~l~~~l~~yLk~lG~t~I~L~Pi~e~~~~~~wGY~~~~y~a~~~~yGt~~dfk~lV~~~H~~GI~VilD~-V~NH~  338 (722)
T 3k1d_A          260 LSYRQLARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVTSYYAPTSRFGTPDDFRALVDALHQAGIGVIVDW-VPAHF  338 (722)
T ss_dssp             CCHHHHHHHHHHHHHHHTCSEEEESCCEECSCGGGTTCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEE-CTTCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCeEEECCcccCCCCCCCCCCcccCcCccccCCCHHHHHHHHHHHHHcCCEEEEEE-Eeecc
Confidence            34566554 4599999999998752  22111 01122      112224489999999999999999999776 46665


Q ss_pred             H---HHhcc----cccccc----cccC-CCCceecCCChhHHHHHHHHHh
Q psy2348          91 D---FVLKV----KEFAKM----RQNF-NDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        91 ~---~~L~~----p~~~~l----~e~~-~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      .   +.++.    +.|..-    ...+ -....++.++|++.+++.+.+.
T Consensus       339 ~~~~~~~~~fdg~~~y~~~d~~~~~~~~Wg~~~ln~~~p~Vr~~l~~~~~  388 (722)
T 3k1d_A          339 PKDAWALGRFDGTPLYEHSDPKRGEQLDWGTYVFDFGRPEVRNFLVANAL  388 (722)
T ss_dssp             CCCTTTTTTTTSSCCSBCCCCCSSSTTCCCCCCBCTTSHHHHHHHHHHHH
T ss_pred             CCccchhhcCCCCcccccCCcccCccCCCCCeeecCCCHHHHHHHHHHHH
Confidence            2   22221    112110    0000 0123578899999999887654

>3u7v_A Beta-galactosidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel, glyco_hydro_42; HET: MSE; 1.80A {Caulobacter crescentus}

Probab=91.32  E-value=0.51  Score=40.36  Aligned_cols=93  Identities=18%  Similarity=0.245  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEe--eccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC----Ccc---hHHHH
Q psy2348          23 LTYLKEILPILAYTGATSLLIEW--EDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP----LYS---DMDFV   93 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~~--ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~----~~G---H~~~~   93 (131)
                      .....+..+.|+..|+|+++++.  ...-|      ..|.|.-+.+.++++.|+++||.||-.+.    .-|   -=.|+
T Consensus        72 ~r~~~~~W~~mKa~G~NtVr~~V~W~~hEP------~~G~yDF~~LD~~ldla~e~GL~VIL~i~aeW~~ggta~~P~WL  145 (552)
T 3u7v_A           72 PSQMAKVWPAIEKVGANTVQVPIAWEQIEP------VEGQFDFSYLDLLLEQARERKVRLVLLWFGTWKNSSPSYAPEWV  145 (552)
T ss_dssp             GGGHHHHHHHHHHHTCSEEEEEEEHHHHCS------BTTBCCCHHHHHHHHHHHHTTCEEEEEEEEEEETTBCTTSCHHH
T ss_pred             hhhhHHHHHHHHHhCCCEEEEEehhhccCC------CCCccChhhHHHHHHHHHHCCCEEEEEeccccccCCCcCCCchh
Confidence            34457888899999999999874  22223      23566667799999999999999998622    122   22344


Q ss_pred             hccc-ccccccc-cCCCCceecCCChhHHH
Q psy2348          94 LKVK-EFAKMRQ-NFNDTRFICPNARSSLD  121 (131)
Q Consensus        94 L~~p-~~~~l~e-~~~~~~~lcp~~~~t~~  121 (131)
                      .+.| .|..++. ++...+.+||.+|...+
T Consensus       146 ~~d~~~~P~vrt~dG~~~~~~sp~~p~yl~  175 (552)
T 3u7v_A          146 KLDDKRFPRLIKDDGERSYSMSPLAKSTLD  175 (552)
T ss_dssp             HTCTTTSCEEECTTSCEEEEECTTCHHHHH
T ss_pred             hcCcccCceeECCCCcEeecCCCCcHHHHH
Confidence            4332 2333332 22233568998876533

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...

Probab=91.23  E-value=0.33  Score=41.75  Aligned_cols=69  Identities=16%  Similarity=0.066  Sum_probs=47.9

Q ss_pred             CHHHHHHHHH--HHHHcCCCEEEEE--eecc-----------CCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2348          22 SLTYLKEILP--ILAYTGATSLLIE--WEDT-----------LPYSLG------FDNTNPFRETEIFIILAAAESNGLAS   80 (131)
Q Consensus        22 ~~~~lk~~i~--~la~~g~n~~~l~--~ed~-----------~p~~~~------~~~~~~YT~eeikeiv~yA~~~~Iev   80 (131)
                      +...|.+-+|  .|+.+|+|.++|-  ++..           ..|.|+      ..++.+=|.+|.|++++-|.++||.|
T Consensus        53 dl~gi~~kLd~~yLk~LGvt~IwL~Pi~~~~~~~~~~~g~~~~~~~GYd~~dy~~idp~~Gt~~dfk~Lv~~aH~~GI~V  132 (686)
T 1d3c_A           53 DWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKV  132 (686)
T ss_dssp             CHHHHHHHHHTTTTGGGTCCEEEECCCEEECCCCEESSSCEECCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEE
T ss_pred             CHHHHHHhcCHHHHHhcCCCEEEeCCcccCCcccccccCccCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEE
Confidence            5777888889  9999999998762  2210           112233      11233458999999999999999999


Q ss_pred             eeccCCcchHH
Q psy2348          81 IPLVPLYSDMD   91 (131)
Q Consensus        81 IP~i~~~GH~~   91 (131)
                      |=-+ .+-|+.
T Consensus       133 ilD~-V~NHts  142 (686)
T 1d3c_A          133 IIDF-APNHTS  142 (686)
T ss_dssp             EEEE-CTTEEE
T ss_pred             EEEe-CcCccc
Confidence            8654 345553

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=91.17  E-value=0.44  Score=41.70  Aligned_cols=107  Identities=12%  Similarity=-0.010  Sum_probs=63.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEE--eeccC-------------CCCCC------CCCCCCCC-------HHHHHHHHHH
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIE--WEDTL-------------PYSLG------FDNTNPFR-------ETEIFIILAA   72 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~--~ed~~-------------p~~~~------~~~~~~YT-------~eeikeiv~y   72 (131)
                      =+...|.+-|+.|+.+|+|.++|-  ++...             .|.|+      ..++.+=|       .+|+|++|+-
T Consensus       202 Gt~~gl~~~l~yLk~LGvt~V~L~Pi~~~~~~~~~~~~~~~g~~~~wGY~~~dy~~~~~~yGt~~~~~~~~~efk~lV~~  281 (750)
T 1bf2_A          202 GTYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQA  281 (750)
T ss_dssp             TSHHHHHHTHHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCBSCSSCBCGGGCSCCSTTHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECCcccCccccccccccccccccccCcCcccccccCccccCCCCCccHHHHHHHHHHH
Confidence            356677777899999999998762  11100             12233      11121225       8999999999


Q ss_pred             HHHcCCeEeeccCCcchHHHHhc--------ccc----------cccccc-------cCCCCceecCCChhHHHHHHHHH
Q psy2348          73 AESNGLASIPLVPLYSDMDFVLK--------VKE----------FAKMRQ-------NFNDTRFICPNARSSLDLVFKMI  127 (131)
Q Consensus        73 A~~~~IevIP~i~~~GH~~~~L~--------~p~----------~~~l~e-------~~~~~~~lcp~~~~t~~f~~~ll  127 (131)
                      |.++||+||=-+ .+.|+..--.        +|.          |-....       .......|+..+|++.+++.+.+
T Consensus       282 ~H~~Gi~VilDv-V~NH~~~~~~~~~~d~~~~p~~~~~~~d~~~~y~~~~~~~~~~~~~g~~~~ln~~~p~V~~~i~d~l  360 (750)
T 1bf2_A          282 FHNAGIKVYMDV-VYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDSL  360 (750)
T ss_dssp             HHHTTCEEEEEE-CCSSCTTCSBSSSSCSSCBBCSSHHHHHHHHHBCBCTTSSSBCCSSSSSCCBCTTSHHHHHHHHHHH
T ss_pred             HHHCCCEEEEEE-ecccccCcccccccccccCCCcccccCCCCcceEECCCCCceecCCCcCCccccCCHHHHHHHHHHH
Confidence            999999998544 3344331100        010          101110       11112578899999999998876


Q ss_pred             h
Q psy2348         128 G  128 (131)
Q Consensus       128 ~  128 (131)
                      .
T Consensus       361 ~  361 (750)
T 1bf2_A          361 A  361 (750)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A*

Probab=91.09  E-value=0.3  Score=42.01  Aligned_cols=68  Identities=12%  Similarity=0.021  Sum_probs=47.4

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eecc--CCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDT--LPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~--~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      +...|.+.++.|+.+|+|+++|-  ++..  ....|+      ..+..+=|.+|++++++-|.++||.||=.+ ++-|+
T Consensus       109 ~~~gl~~~LdyL~~lGv~~v~l~P~~~~~~~~~~~GY~~~dy~~i~~~~Gt~~d~~~lv~~~h~~Gi~Vi~D~-V~NH~  186 (655)
T 3ucq_A          109 TLKGVEERLDYLEGLGVKYLHLMPLLRPREGENDGGYAVQDYRAVRPDLGTMDDLSALARALRGRGISLVLDL-VLNHV  186 (655)
T ss_dssp             SHHHHHTTHHHHHHTTCCEEEECCCEEECSSCCGGGTSEEEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEE-CCSEE
T ss_pred             CHHHHHHhhHHHHHcCCCEEEECCCcCCCCCCCCCCcCCcCcCccCccCCCHHHHHHHHHHHHHCCCEEEEEe-ecccc
Confidence            67788889999999999998772  2211  001222      112223489999999999999999998765 34554

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=91.01  E-value=0.33  Score=42.23  Aligned_cols=106  Identities=9%  Similarity=0.044  Sum_probs=62.6

Q ss_pred             CHHHHHHH--HHHHHHcCCCEEEEE--eeccC----------CCCCC------CCCCCCCC-------HHHHHHHHHHHH
Q psy2348          22 SLTYLKEI--LPILAYTGATSLLIE--WEDTL----------PYSLG------FDNTNPFR-------ETEIFIILAAAE   74 (131)
Q Consensus        22 ~~~~lk~~--i~~la~~g~n~~~l~--~ed~~----------p~~~~------~~~~~~YT-------~eeikeiv~yA~   74 (131)
                      +...|.+-  ++.|+.+|+|.++|-  ++...          .|.|+      ..++.+=|       .+|+|++|+-|.
T Consensus       198 t~~gi~~~~~l~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~~wGY~~~~y~~~~~~yGt~~~~~~~~~dfk~lv~~~H  277 (718)
T 2vr5_A          198 TYEGLASEQMISYLKDLGITTVELMPVFHFIDQRFLTDKGLTNYWGYDPINFFSPECRYSSTGCLGGQVLSFKKMVNELH  277 (718)
T ss_dssp             SHHHHTSHHHHHHHHHHTCCEEEECCCBCBCCCHHHHTTTCCCSSCCCBSCSSSBCGGGCSSCTTTHHHHHHHHHHHHHH
T ss_pred             CHHHHhcchhhHHHHHcCCCeEEEeCCEecCccccccccCCcCccCcCcccCcccChhhcCCCCCCchHHHHHHHHHHHH
Confidence            55566555  999999999998763  11100          12233      11122225       699999999999


Q ss_pred             HcCCeEeeccCCcchHHHH-----------hccccccccccc--------CCCCceecCCChhHHHHHHHHHh
Q psy2348          75 SNGLASIPLVPLYSDMDFV-----------LKVKEFAKMRQN--------FNDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        75 ~~~IevIP~i~~~GH~~~~-----------L~~p~~~~l~e~--------~~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      ++||+||=-+ .+.|+..-           +..+.|-.....        ......|+-.+|++.+++.+.+.
T Consensus       278 ~~Gi~VilDv-V~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~d~l~  349 (718)
T 2vr5_A          278 NAGIEVIIDV-VYNHTAEGNHLGPTLSFRGIDNTAYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLR  349 (718)
T ss_dssp             TTTCEEEEEE-CCSCCSSCSTTSCCSSHHHHHSTTTBCBCTTTSSSBCCSSSSSCCBCTTSHHHHHHHHHHHH
T ss_pred             HCCCEEEEEe-ccCcccCccccCccccccCCCCCcceEeCCCCCceeecCCCccCeecCCCHHHHHHHHHHHH
Confidence            9999998554 33444211           111222222110        01124688999999999888764

>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3

Probab=90.91  E-value=0.28  Score=38.91  Aligned_cols=56  Identities=9%  Similarity=0.046  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHcCCCEEEEEe--eccCCCCCCCCCCCCCC---HHHHHHHHHHHHHcCCeEeeccCC
Q psy2348          26 LKEILPILAYTGATSLLIEW--EDTLPYSLGFDNTNPFR---ETEIFIILAAAESNGLASIPLVPL   86 (131)
Q Consensus        26 lk~~i~~la~~g~n~~~l~~--ed~~p~~~~~~~~~~YT---~eeikeiv~yA~~~~IevIP~i~~   86 (131)
                      .++.|+.|+.+|+|.+++-+  +...|  +   ..+.+.   .+.++++|++|+++||.||-.+-.
T Consensus        63 ~~~di~~i~~~G~n~vRipv~w~~~~~--~---~~~~~~~~~l~~l~~~v~~a~~~Gi~vild~H~  123 (380)
T 1edg_A           63 TKQMIDAIKQKGFNTVRIPVSWHPHVS--G---SDYKISDVWMNRVQEVVNYCIDNKMYVILNTHH  123 (380)
T ss_dssp             CHHHHHHHHHHTCCEEEECCCCGGGEE--T---TTTEECHHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred             cHHHHHHHHHcCCCEEEecccHHhhcC--C---CCCcCCHHHHHHHHHHHHHHHHCCCEEEEeCCC
Confidence            47789999999999999854  22122  0   122333   467899999999999999966543

>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A*

Probab=90.53  E-value=1  Score=34.11  Aligned_cols=53  Identities=11%  Similarity=0.002  Sum_probs=37.1

Q ss_pred             HHHHHHHH-HcCCCEEEEEeeccCCCCCCCCCCCCC------CHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          27 KEILPILA-YTGATSLLIEWEDTLPYSLGFDNTNPF------RETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        27 k~~i~~la-~~g~n~~~l~~ed~~p~~~~~~~~~~Y------T~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      ++-|+.|+ .+|+|.+++-+.-. |-.     +++.      ..+-+++++++|+++||.||-.+-
T Consensus        41 ~~di~~~~~~~G~N~vRi~~~~~-~~~-----~~~~~~~p~~~~~~ld~~v~~a~~~Gi~vild~h  100 (293)
T 1tvn_A           41 AETVAKAKTEFNATLIRAAIGHG-TST-----GGSLNFDWEGNMSRLDTVVNAAIAEDMYVIIDFH  100 (293)
T ss_dssp             HHHHHHHHHHHCCSEEEEEEECC-TTS-----TTSTTTCHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHhcCCCEEEEecccc-CCC-----CCccccChHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence            56778899 59999999865311 111     1222      136788999999999999996553

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1

Probab=90.49  E-value=0.52  Score=40.49  Aligned_cols=69  Identities=16%  Similarity=0.073  Sum_probs=47.9

Q ss_pred             CHHHHHHHHH--HHHHcCCCEEEEE--eec---c-------CCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348          22 SLTYLKEILP--ILAYTGATSLLIE--WED---T-------LPYSLG------FDNTNPFRETEIFIILAAAESNGLASI   81 (131)
Q Consensus        22 ~~~~lk~~i~--~la~~g~n~~~l~--~ed---~-------~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevI   81 (131)
                      +...|.+-+|  .|+.+|+|.++|-  ++.   .       ..|.|+      ..++.+=|.+|.|++++-|.++||.||
T Consensus        50 dl~gi~~kLd~~yLk~LGv~aIwL~Pi~~~~~~~~~~~~g~~~~~GY~~~Dy~~idp~~Gt~~df~~Lv~~aH~~GIkVi  129 (680)
T 1cyg_A           50 DWQGIINKINDGYLTDMGVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFFGTLSDFQRLVDAAHAKGIKVI  129 (680)
T ss_dssp             CHHHHHHHHHTSTTTTTTCCEEEECCCEEECCCCCSSSSCCCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred             CHHHHHhhcCHHHHHhCCCCEEEeCccccCccccccccCCCCCCCCcCchhccccCcccCCHHHHHHHHHHHHHCCCEEE
Confidence            5777888899  9999999998762  221   0       012233      113445589999999999999999998


Q ss_pred             eccCCcchHH
Q psy2348          82 PLVPLYSDMD   91 (131)
Q Consensus        82 P~i~~~GH~~   91 (131)
                      =-+ .+-|+.
T Consensus       130 lD~-V~NHts  138 (680)
T 1cyg_A          130 IDF-APNHTS  138 (680)
T ss_dssp             EEE-CTTEEE
T ss_pred             EEe-CCCCCC
Confidence            554 344543

>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*

Probab=90.45  E-value=0.64  Score=38.00  Aligned_cols=58  Identities=16%  Similarity=0.097  Sum_probs=44.1

Q ss_pred             HHHHHHHHHcCCCEEEEEeeccCCC--CCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          27 KEILPILAYTGATSLLIEWEDTLPY--SLGFDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        27 k~~i~~la~~g~n~~~l~~ed~~p~--~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      +..+..|+..|+|.+++.+- .-|.  .|.--.+|.++.+.+.++++.|+++|+.|+..+-
T Consensus        51 ~d~~~ilk~~G~N~VRlrvw-v~p~~~~g~~y~~g~~d~~~~~~~a~~Ak~~GLkVlldfH  110 (399)
T 1ur4_A           51 QDIFKTLKEAGVNYVRVRIW-NDPYDANGNGYGGGNNDLEKAIQIGKRATANGMKLLADFH  110 (399)
T ss_dssp             CCHHHHHHHTTCCEEEEEEC-SCCBCTTCCBCSTTCCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             chHHHHHHHCCCCEEEEeee-cCCcccccCccCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence            46789999999999998662 2233  2211123568999999999999999999999754

>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A*

Probab=90.14  E-value=0.37  Score=39.58  Aligned_cols=53  Identities=9%  Similarity=-0.007  Sum_probs=38.8

Q ss_pred             HHHHH-HHHHHcCCCEEEEEe--eccCCCCCCCCCCCCCCH---HHHHHHHHHHHHcCCeEeecc
Q psy2348          26 LKEIL-PILAYTGATSLLIEW--EDTLPYSLGFDNTNPFRE---TEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        26 lk~~i-~~la~~g~n~~~l~~--ed~~p~~~~~~~~~~YT~---eeikeiv~yA~~~~IevIP~i   84 (131)
                      .++-| +.|+.+|+|.+++.+  +...|-      .|.|..   +.++++++.|+++||.||-.+
T Consensus        67 ~~~di~~~l~~~G~N~VRl~v~w~~~~p~------~g~~~~~~l~~l~~~v~~a~~~Gi~vildl  125 (481)
T 2osx_A           67 TEADLAREYADMGTNFVRFLISWRSVEPA------PGVYDQQYLDRVEDRVGWYAERGYKVMLDM  125 (481)
T ss_dssp             CHHHHHHHHHHHCCCEEEEEECHHHHCSB------TTBCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cHHHHHHHHHHCCCCEEEEeCcHHHcCCC------CCCcCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence            45677 899999999999864  222222      245554   456779999999999999664

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=90.00  E-value=0.39  Score=41.31  Aligned_cols=106  Identities=13%  Similarity=0.088  Sum_probs=62.5

Q ss_pred             CHHHHHHH--HHHHHHcCCCEEEEE----eecc--------CCCCCC-----CCCCCCC------CHHHHHHHHHHHHHc
Q psy2348          22 SLTYLKEI--LPILAYTGATSLLIE----WEDT--------LPYSLG-----FDNTNPF------RETEIFIILAAAESN   76 (131)
Q Consensus        22 ~~~~lk~~--i~~la~~g~n~~~l~----~ed~--------~p~~~~-----~~~~~~Y------T~eeikeiv~yA~~~   76 (131)
                      +...|.+-  ++.|+.+|+|.++|-    ....        ..|.|+     ..-...|      |.+|.|++|+-|.++
T Consensus       175 ~~~gi~~~~~l~yL~~LGvt~i~L~Pi~~~~~~~~~~~~g~~~~wGY~~~~y~~~~~~~G~~p~~~~~d~~~lv~~~H~~  254 (657)
T 2wsk_A          175 TYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAMFALHPAYACSPETALDEFRDAIKALHKA  254 (657)
T ss_dssp             SHHHHTSHHHHHHHHHHTCCEEEESCCEEECCCHHHHTTTCCCSSCCCEEEEEEECGGGCSSGGGHHHHHHHHHHHHHHT
T ss_pred             CHHHHhcccchHHHHHcCCCEEEECCccccCccccccccccccccCcCcccCCCCCHHHcCCCCcCHHHHHHHHHHHHHC
Confidence            45555544  999999999998762    2110        012233     0001234      489999999999999


Q ss_pred             CCeEeeccCCcchHHHH--------h---cccccccccc------cCCCCceecCCChhHHHHHHHHHh
Q psy2348          77 GLASIPLVPLYSDMDFV--------L---KVKEFAKMRQ------NFNDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        77 ~IevIP~i~~~GH~~~~--------L---~~p~~~~l~e------~~~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      ||.||=-+ .+.|+..-        +   ..+.|-....      .......|+-.+|++.+++.+.+.
T Consensus       255 Gi~VilD~-V~NH~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~d~~~  322 (657)
T 2wsk_A          255 GIEVILDI-VLNHSAELDLDGPLFSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLR  322 (657)
T ss_dssp             TCEEEEEE-CCSCCTTCSTTSBCCSHHHHHHHHHBCBCTTSSBCCSSSSSCCBCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEEE-eecccccccccCccccccCCCCccceEECCCCCeeCCCCcCCcccCCCHHHHHHHHHHHH
Confidence            99998654 34454321        1   0111111111      011124688999999999888764

>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*

Probab=89.92  E-value=0.8  Score=36.10  Aligned_cols=73  Identities=8%  Similarity=-0.105  Sum_probs=44.8

Q ss_pred             CCCceeEEeec---CCCCCCHHHHHHHHHHHH-HcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348           6 TFKEVLVHLDL---KGAPPSLTYLKEILPILA-YTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI   81 (131)
Q Consensus         6 ~f~~Rg~mlD~---~~~~~~~~~lk~~i~~la-~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI   81 (131)
                      .|..||+.+--   ...+.+    ++-|+.|+ .+|+|.+++-+.-  +-.+...+...  .+.+++++++|+++||-||
T Consensus        36 ~~~lrGvn~~~~~~~~~~~~----~~d~~~l~~~~G~N~VRip~~~--~~~~~~~~~~~--l~~ld~~v~~a~~~Gi~VI  107 (364)
T 1g01_A           36 PVQLRGMSTHGLQWFGEIVN----ENAFVALSNDWGSNMIRLAMYI--GENGYATNPEV--KDLVYEGIELAFEHDMYVI  107 (364)
T ss_dssp             BCCCEEEEESCHHHHGGGCS----HHHHHHHHTTSCCSEEEEEEES--SSSSTTTCTTH--HHHHHHHHHHHHHTTCEEE
T ss_pred             EEEEEEEecCcccccCCccC----HHHHHHHHHHCCCCEEEEEeee--CCCCCccCHHH--HHHHHHHHHHHHHCCCEEE
Confidence            35667776510   112223    45677886 9999999985431  10111111112  4789999999999999999


Q ss_pred             eccCC
Q psy2348          82 PLVPL   86 (131)
Q Consensus        82 P~i~~   86 (131)
                      -.+-.
T Consensus       108 ld~H~  112 (364)
T 1g01_A          108 VDWHV  112 (364)
T ss_dssp             EEEEC
T ss_pred             EEecc
Confidence            66553

>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A*

Probab=89.90  E-value=0.68  Score=41.42  Aligned_cols=66  Identities=12%  Similarity=0.102  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHcCCCEEEEE--eeccCC--------CCCC-CC-----C----CCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348          24 TYLKEILPILAYTGATSLLIE--WEDTLP--------YSLG-FD-----N----TNPFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus        24 ~~lk~~i~~la~~g~n~~~l~--~ed~~p--------~~~~-~~-----~----~~~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      ..|.+.++.|+.+|++.++|-  ++....        +.|+ ..     +    ..+=|.+|.+++|+.|.++||.||=-
T Consensus       633 ~gi~~~l~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~GY~~~d~~~i~es~~~~~Gt~~df~~lv~~~H~~GI~VilD  712 (844)
T 3aie_A          633 VVIAKNVDKFAEWGVTDFEMAPQYVSSTDGSFLDSVIQNGYAFTDRYDLGISKPNKYGTADDLVKAIKALHSKGIKVMAD  712 (844)
T ss_dssp             HHHHHTHHHHHHTTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSCSSCBTTBCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHCCCCeEEECCcccCCCCCccccccCCCCCccccCccCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence            567788999999999998762  221111        2233 11     1    23448999999999999999999865


Q ss_pred             cCCcchH
Q psy2348          84 VPLYSDM   90 (131)
Q Consensus        84 i~~~GH~   90 (131)
                      + .|.|+
T Consensus       713 ~-V~NH~  718 (844)
T 3aie_A          713 W-VPDQM  718 (844)
T ss_dssp             E-CCSEE
T ss_pred             E-ccCcc
Confidence            5 56676

>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A*

Probab=89.87  E-value=1.4  Score=36.37  Aligned_cols=63  Identities=13%  Similarity=0.087  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHcCCCEEEEEee--ccCCCC--CC---CCCC---CCCCHHHHHHHHHHHHHcCCeEeeccCCcc
Q psy2348          26 LKEILPILAYTGATSLLIEWE--DTLPYS--LG---FDNT---NPFRETEIFIILAAAESNGLASIPLVPLYS   88 (131)
Q Consensus        26 lk~~i~~la~~g~n~~~l~~e--d~~p~~--~~---~~~~---~~YT~eeikeiv~yA~~~~IevIP~i~~~G   88 (131)
                      +++.++.|+.+|+|.+++-+.  .-.|-.  +.   ..++   +.-..+-+++++++|+++||.||-.+-..+
T Consensus        86 ~~~~i~~ik~~G~N~VRipi~~~~l~~~~~p~~~~~~~np~~~~~~~l~~ld~vV~~a~~~Gi~VIldlH~~~  158 (458)
T 3qho_A           86 WEDMLLQIKSLGFNAIRLPFCTESVKPGTQPIGIDYSKNPDLRGLDSLQIMEKIIKKAGDLGIFVLLDYHRIG  158 (458)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEETGGGSTTCCCCCCCTTTCGGGTTCCHHHHHHHHHHHHHHTTCEEEEEEEESS
T ss_pred             HHHHHHHHHHcCCCEEEEeeeHHHhCCCCCccccccccCccccchHHHHHHHHHHHHHHHCCCEEEEecccCC
Confidence            689999999999999998643  211110  00   1111   123578899999999999999998775543

>2xsa_A Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION, O-GLCNACASE, glycosyl hydrolase, hydrolase; 2.00A {Oceanicola granulosus} PDB: 2xsb_A*

Probab=89.82  E-value=1.6  Score=36.42  Aligned_cols=61  Identities=13%  Similarity=0.126  Sum_probs=45.4

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC-CCCCCCCCHHH---HHHHHHHHHHcCCeEe
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG-FDNTNPFRETE---IFIILAAAESNGLASI   81 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~-~~~~~~YT~ee---ikeiv~yA~~~~IevI   81 (131)
                      |.+-+-+.=++++++|+.+|+|+.+--=.| =||-.. |+  ..|+.+|   +++|++-|++.||+.+
T Consensus        11 G~PWS~e~R~~l~~f~g~~kmNtYiYAPKD-Dpyhr~~WR--e~Yp~eel~~l~eLv~~a~~~~V~Fv   75 (447)
T 2xsa_A           11 GRDWRRDERATVMDWIAAAGMNTYIYGPKD-DVHVRARWR--VPYDAAGLARLTELRDAAAARGMVFY   75 (447)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTCCEEEECCTT-CTTTTTTTT--SCCCHHHHHHHHHHHHHHHTTTCEEE
T ss_pred             CCCCCHHHHHHHHHHHHHcCCceEEEccCC-ChHHHHhhc--ccCCHHHHHHHHHHHHHHHHcCCEEE
Confidence            677888889999999999999985421111 133222 66  6788775   6888999999999876

>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12

Probab=89.68  E-value=0.7  Score=37.82  Aligned_cols=64  Identities=13%  Similarity=0.062  Sum_probs=40.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC--CcchHHH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP--LYSDMDF   92 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~--~~GH~~~   92 (131)
                      +.+..+++|+.++.+|++.+.--+-  .| .+    ...-..+++++|+++|+++|++||.-|+  ++.++..
T Consensus        39 ~~~~~~~Yi~~a~~~Gf~~IFTSL~--~~-e~----~~~~~~~~~~~l~~~a~~~g~~vi~DVsp~~~~~Lg~  104 (385)
T 1x7f_A           39 TKEKDMAYISAAARHGFSRIFTCLL--SV-NR----PKEEIVAEFKEIINHAKDNNMEVILDVAPAVFDQLGI  104 (385)
T ss_dssp             CHHHHHHHHHHHHTTTEEEEEEEEC--CC-------------HHHHHHHHHHHHTTCEEEEEECTTCC-----
T ss_pred             CHHHHHHHHHHHHHCCCCEEEccCC--cc-CC----ChHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCC
Confidence            4667789999999999987642221  01 11    1234578999999999999999999885  4555443

>2j78_A Beta-glucosidase A; family 1, hydrolase, inhibitor, glycosidase, polysaccharide degradation, transition state mimic, carbohydrate metabolism; HET: GOX; 1.65A {Thermotoga maritima} SCOP: c.1.8.4 PDB: 1oif_A* 1oim_A* 1oin_A* 1od0_A* 1w3j_A* 1uz1_A* 2cbv_A* 2ces_A* 2cet_A* 2j75_A* 2j77_A* 2cbu_A* 2j79_A* 2j7b_A* 2j7c_A* 2j7d_A* 2j7e_A* 2j7f_A* 2j7g_A* 2j7h_A* ...

Probab=89.65  E-value=0.85  Score=38.04  Aligned_cols=61  Identities=18%  Similarity=0.219  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHcCCCEEEEE--eeccCCCCCCCCCCCCCCH---HHHHHHHHHHHHcCCeEeecc---CCcchH
Q psy2348          25 YLKEILPILAYTGATSLLIE--WEDTLPYSLGFDNTNPFRE---TEIFIILAAAESNGLASIPLV---PLYSDM   90 (131)
Q Consensus        25 ~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~~~~~~~YT~---eeikeiv~yA~~~~IevIP~i---~~~GH~   90 (131)
                      ..++=|++|+++|+|.+++-  |..-+|- |    .|.+.+   +=.+++++.|.++||++|..+   ++|-.+
T Consensus        82 ~~~eDi~lm~~~G~~~~R~si~W~Ri~P~-G----~g~~n~~gl~~yd~lid~l~~~GI~pivtL~H~d~P~~l  150 (468)
T 2j78_A           82 RWKEDIEIIEKLGVKAYRFSISWPRILPE-G----TGRVNQKGLDFYNRIIDTLLEKGITPFVTIYHWDLPFAL  150 (468)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCHHHHSTT-S----SSCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBHHH
T ss_pred             cCHHHHHHHHHcCCCEEEeccCHHHhCCC-C----CCCcCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCchhh
Confidence            46789999999999998874  4455552 1    357888   556899999999999999987   677665

>1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme, thermostability, TIM barrel, alkylglucosides; 2.50A {Pyrococcus horikoshii} SCOP: c.1.8.4

Probab=89.63  E-value=0.48  Score=38.95  Aligned_cols=62  Identities=11%  Similarity=0.162  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEe--eccCCCCCCCCCCCCCCHHHH---HHHHHHHHHcCCeEeecc---CCcchHH
Q psy2348          24 TYLKEILPILAYTGATSLLIEW--EDTLPYSLGFDNTNPFRETEI---FIILAAAESNGLASIPLV---PLYSDMD   91 (131)
Q Consensus        24 ~~lk~~i~~la~~g~n~~~l~~--ed~~p~~~~~~~~~~YT~eei---keiv~yA~~~~IevIP~i---~~~GH~~   91 (131)
                      ...++=|++|+++|+|.+++-+  +.-+|      .+|.+.++-+   +++++.|.++||++|..+   ++|-++.
T Consensus        50 ~~~~eDi~lm~~~G~~~~R~si~W~ri~P------~~g~~n~~gl~~yd~lid~l~~~GI~pivtL~H~d~P~~l~  119 (423)
T 1vff_A           50 ELYRDDIQLMTSLGYNAYRFSIEWSRLFP------EENKFNEDAFMKYREIIDLLLTRGITPLVTLHHFTSPLWFM  119 (423)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCHHHHCS------BTTBCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBHHHH
T ss_pred             hccHHHHHHHHHcCCCEEEeecCHHHhCC------CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEccCCcccHHHH
Confidence            3457889999999999988754  44444      3368889877   999999999999999765   4555553

>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3

Probab=89.47  E-value=1.3  Score=33.45  Aligned_cols=54  Identities=9%  Similarity=-0.074  Sum_probs=38.8

Q ss_pred             HHHHHHHH-HcCCCEEEEEeeccCCCCCCCCCCCC-C----CHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348          27 KEILPILA-YTGATSLLIEWEDTLPYSLGFDNTNP-F----RETEIFIILAAAESNGLASIPLVPLY   87 (131)
Q Consensus        27 k~~i~~la-~~g~n~~~l~~ed~~p~~~~~~~~~~-Y----T~eeikeiv~yA~~~~IevIP~i~~~   87 (131)
                      ++-|+.|+ .+|+|.+++-+.-    ..   .++. .    ..+.+++++++|.++||.||-.+-..
T Consensus        41 ~~d~~~l~~~~G~N~vR~~~~~----~~---~~~~~~~~~~~~~~ld~~v~~a~~~Gi~vild~h~~  100 (291)
T 1egz_A           41 ADTVASLKKDWKSSIVRAAMGV----QE---SGGYLQDPAGNKAKVERVVDAAIANDMYAIIGWHSH  100 (291)
T ss_dssp             HHHHHHHHHTTCCCEEEEEEEC----SS---TTSTTTCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred             HHHHHHHHHHcCCCEEEEeccc----cc---cCCCcCCHHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            57788899 8999999986531    11   1111 1    24678899999999999999876443

>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A

Probab=89.45  E-value=1.2  Score=34.24  Aligned_cols=71  Identities=13%  Similarity=-0.059  Sum_probs=44.1

Q ss_pred             CCCceeEEee-c--CCCCCCHHHHHHHHHHHH-HcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348           6 TFKEVLVHLD-L--KGAPPSLTYLKEILPILA-YTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI   81 (131)
Q Consensus         6 ~f~~Rg~mlD-~--~~~~~~~~~lk~~i~~la-~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI   81 (131)
                      .+.-|||-+- .  .+.+.+    ++-++.|+ .+|+|.+++-+-..  -.+...+..  ..+.+++++++|.++||-||
T Consensus        26 ~v~lrGvn~~~~~~~~~~~~----~~~~~~l~~~~G~N~VRip~~~~--~~~~~~~~~--~~~~ld~~v~~a~~~Gi~Vi   97 (303)
T 7a3h_A           26 QVQLKGMSSHGLQWYGQFVN----YESMKWLRDDWGINVFRAAMYTS--SGGYIDDPS--VKEKVKEAVEAAIDLDIYVI   97 (303)
T ss_dssp             BCCCEEEEESCHHHHGGGCS----HHHHHHHHHHTCCCEEEEEEESS--TTSTTTCTT--HHHHHHHHHHHHHHHTCEEE
T ss_pred             EEEEEEeccCccccccccCC----HHHHHHHHHhcCCCEEEEEEEeC--CCCccCCHH--HHHHHHHHHHHHHHCCCEEE
Confidence            3566777432 1  123344    34556676 79999999866321  011111111  36889999999999999999


Q ss_pred             ecc
Q psy2348          82 PLV   84 (131)
Q Consensus        82 P~i   84 (131)
                      =.+
T Consensus        98 ld~  100 (303)
T 7a3h_A           98 IDW  100 (303)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            544

>4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila}

Probab=89.44  E-value=1  Score=33.55  Aligned_cols=68  Identities=12%  Similarity=0.019  Sum_probs=44.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEEe--e------ccCCCCCC----CC---------CCC---CCCHHHHHHHHHHHH
Q psy2348          19 APPSLTYLKEILPILAYTGATSLLIEW--E------DTLPYSLG----FD---------NTN---PFRETEIFIILAAAE   74 (131)
Q Consensus        19 ~~~~~~~lk~~i~~la~~g~n~~~l~~--e------d~~p~~~~----~~---------~~~---~YT~eeikeiv~yA~   74 (131)
                      ++.+.+.+.+.++.|+.+|+|.+++..  +      +.+.....    ..         ...   .-.-+-+.++++.|+
T Consensus        32 ~~~~~~~~~~~l~~~~~~G~N~iR~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~  111 (387)
T 4awe_A           32 PFNDQPDIEKGMTAARAAGLTVFRTWGFNDKNRTYIPTGLPQYGNEGAGDPTNTVFQWFEADGTQTIDVSPFDKVVDSAT  111 (387)
T ss_dssp             GGSCHHHHHHHHHHHHHTTCCEEEEECCCEEESSCCTTCSSCCCCCTTCCTTCCCSEEECTTSCEEECCGGGHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEeCcccCCCccCccccchhhhccccccccchhhhhcccCccchhhhhhHHHHHHHHH
Confidence            346788999999999999999999842  1      11110000    00         000   011244688999999


Q ss_pred             HcCCeEeeccCC
Q psy2348          75 SNGLASIPLVPL   86 (131)
Q Consensus        75 ~~~IevIP~i~~   86 (131)
                      ++||.||..+-.
T Consensus       112 ~~gi~v~~~~~~  123 (387)
T 4awe_A          112 KTGIKLIVALTN  123 (387)
T ss_dssp             HHTCEEEEECCB
T ss_pred             HcCCEEEEeecc
Confidence            999999987754

>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1

Probab=89.44  E-value=0.76  Score=40.43  Aligned_cols=65  Identities=15%  Similarity=-0.002  Sum_probs=46.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEE--eecc-CCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIE--WEDT-LPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~--~ed~-~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      -.+...+.+.++.|+.+|+|.++|-  ++.. --+.|+      -.+..+=|.+|.+++++-|.++||.||=-|
T Consensus        13 gGtf~gi~~~LdYLk~LGVtaIwLsPi~~~~~gs~hGYdv~Dy~~Idp~lGt~edfk~LV~aaH~~GIkVIlDv   86 (720)
T 1iv8_A           13 NFNFGDVIDNLWYFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQDI   86 (720)
T ss_dssp             TBCHHHHHHTHHHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEECTTTTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCHHHHHHHHHHHHhCCCCEEEECCcccCCCCCCCCCCCccCCCcCccCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence            3577888899999999999998762  2210 012233      113334589999999999999999998544

>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}

Probab=89.25  E-value=0.92  Score=41.17  Aligned_cols=107  Identities=15%  Similarity=0.149  Sum_probs=63.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEE--eec----cC--------------CC-CCC-----CCCCCCCC---------HHH
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIE--WED----TL--------------PY-SLG-----FDNTNPFR---------ETE   65 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~--~ed----~~--------------p~-~~~-----~~~~~~YT---------~ee   65 (131)
                      =+...|.+-|+.|+.+|+|.++|-  ++.    -+              .| .|+     ..-.+.|.         .+|
T Consensus       484 Gt~~gl~~~LdyLk~LGvtaV~L~Pv~~~~~~~e~~~~~~~~~y~~~~~~ynwGY~~~~y~a~~~~ygt~p~~~~~~~~e  563 (1014)
T 2ya1_A          484 GTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAE  563 (1014)
T ss_dssp             TSHHHHHTTHHHHHHHTCSEEEESCCBCBSSCBGGGTTSCCCSCCSSSCSCCCSCSBSCSSSBCSTTCSCTTCTTHHHHH
T ss_pred             cCHHHHHHHhHHHHHcCCCeEEecCcccccccccccccccccccccCcCCcccCCCcCcCccccccccCCCccccchHHH
Confidence            466777777899999999998762  220    00              01 222     11012232         699


Q ss_pred             HHHHHHHHHHcCCeEeeccCCcchHHH--Hhc--ccccccccc-cCC-----CCceecCCChhHHHHHHHHHh
Q psy2348          66 IFIILAAAESNGLASIPLVPLYSDMDF--VLK--VKEFAKMRQ-NFN-----DTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        66 ikeiv~yA~~~~IevIP~i~~~GH~~~--~L~--~p~~~~l~e-~~~-----~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      .|++|+.|.++||+||=-+ .+.|+..  .+.  +|.|-+... ++.     ..+.++..+|.+.+++.+.+.
T Consensus       564 fk~lV~~~H~~GI~VIlDv-V~NHt~~~~~~~~~~~~yy~~~~~~g~~~~~~~~~~l~~~~~~vr~~i~d~l~  635 (1014)
T 2ya1_A          564 FKNLINEIHKRGMGAILDV-VYNHTAKVDLFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHHMTKRLLIDSIK  635 (1014)
T ss_dssp             HHHHHHHHHTTTCEEEEEE-CTTCCSCHHHHHTTSTTTSBCBCTTCCBCEETTEECBCTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCEEEEEE-eccccccccccccCCCCeeEEeCCCCCcccCCCCCCcCcCCHHHHHHHHHHHH
Confidence            9999999999999998655 3445432  121  344443321 111     113466778888888776543

>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}

Probab=89.03  E-value=1.1  Score=36.59  Aligned_cols=57  Identities=7%  Similarity=0.075  Sum_probs=41.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      ..+..+++|+.++.+|++.+.--+-  .| .    ....-..+++++|.++|+++|++||.-|+
T Consensus        15 ~~~~~~~yi~~a~~~Gf~~IFTSL~--~~-e----~~~~~~~~~~~~l~~~a~~~g~~vi~DIs   71 (372)
T 2p0o_A           15 ITNDTIIYIKKMKALGFDGIFTSLH--IP-E----DDTSLYRQRLTDLGAIAKAEKMKIMVDIS   71 (372)
T ss_dssp             CCHHHHHHHHHHHHTTCCEEEEEEC--CC----------CHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHHCCCCEEEccCC--cc-C----CChHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence            4566789999999999988643220  01 1    11233479999999999999999999886

>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6

Probab=88.92  E-value=1.5  Score=35.86  Aligned_cols=84  Identities=11%  Similarity=0.010  Sum_probs=63.8

Q ss_pred             Eeec-CCCCCCHHHHHHHHHHHHHcCCCEEEEEe--ecc--CCCCCC--CCC-CC----------CCCHHHHHHHHHHHH
Q psy2348          13 HLDL-KGAPPSLTYLKEILPILAYTGATSLLIEW--EDT--LPYSLG--FDN-TN----------PFRETEIFIILAAAE   74 (131)
Q Consensus        13 mlD~-~~~~~~~~~lk~~i~~la~~g~n~~~l~~--ed~--~p~~~~--~~~-~~----------~YT~eeikeiv~yA~   74 (131)
                      .-.+ .+|.=+++..+++|+..+.-|++.+.+..  -++  .|+...  ..+ .+          .++.|+.++|.+||+
T Consensus        32 IAEiG~NH~Gsle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~  111 (385)
T 1vli_A           32 IAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCR  111 (385)
T ss_dssp             EEEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHH
T ss_pred             EEeecCcccccHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHH
Confidence            3344 38999999999999999999999987754  233  343311  110 01          478999999999999


Q ss_pred             HcCCeEeeccCCcchHHHHhcc
Q psy2348          75 SNGLASIPLVPLYSDMDFVLKV   96 (131)
Q Consensus        75 ~~~IevIP~i~~~GH~~~~L~~   96 (131)
                      +.||.++=++=-+.+.+.+..+
T Consensus       112 ~~Gi~~~stpfD~~svd~l~~~  133 (385)
T 1vli_A          112 EKQVIFLSTVCDEGSADLLQST  133 (385)
T ss_dssp             HTTCEEECBCCSHHHHHHHHTT
T ss_pred             HcCCcEEEccCCHHHHHHHHhc
Confidence            9999999999999999988554

>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A

Probab=88.73  E-value=1  Score=35.21  Aligned_cols=51  Identities=20%  Similarity=0.001  Sum_probs=35.0

Q ss_pred             HHHHH-HHcCCCEEEEEeeccCCCCC-CCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          29 ILPIL-AYTGATSLLIEWEDTLPYSL-GFDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        29 ~i~~l-a~~g~n~~~l~~ed~~p~~~-~~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      -++.| +.+|+|.+++-+-   +-.+ ...+.  -..+.+++++++|.++||-||-++
T Consensus        73 ~~~~l~~~~G~N~VRi~~~---~~~~~~~~~~--~~~~~ld~~v~~a~~~Gi~VilD~  125 (327)
T 3pzt_A           73 SLKWLRDDWGITVFRAAMY---TADGGYIDNP--SVKNKVKEAVEAAKELGIYVIIDW  125 (327)
T ss_dssp             HHHHHHHHTCCSEEEEEEE---SSTTSTTTCG--GGHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHHHHHHhcCCCEEEEEeE---ECCCCcccCH--HHHHHHHHHHHHHHHCCCEEEEEe
Confidence            34556 6899999998653   1111 11111  137899999999999999999544

>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*

Probab=88.66  E-value=1.4  Score=32.54  Aligned_cols=60  Identities=20%  Similarity=0.139  Sum_probs=43.4

Q ss_pred             eeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2348          10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLAS   80 (131)
Q Consensus        10 Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~Iev   80 (131)
                      -|+|+-+.+      .+.+.++.++.+|++++.+...+  | .. +. ...++.++++++.+.++++||+|
T Consensus         4 ~G~~~~~~~------~l~~~l~~~~~~G~~~vEl~~~~--~-~~-~~-~~~~~~~~~~~~~~~l~~~gl~~   63 (285)
T 1qtw_A            4 IGAHVSAAG------GLANAAIRAAEIDATAFALFTKN--Q-RQ-WR-AAPLTTQTIDEFKAACEKYHYTS   63 (285)
T ss_dssp             EEEECCCTT------CHHHHHHHHHHTTCSEEECCSSC--S-SC-SS-CCCCCHHHHHHHHHHHHHTTCCG
T ss_pred             eeEEecccc------CHHHHHHHHHHcCCCEEEeeCCC--C-Cc-Cc-CCCCCHHHHHHHHHHHHHcCCCc
Confidence            466666652      27889999999999998772111  1 11 22 23578999999999999999995

>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}

Probab=88.64  E-value=2.1  Score=31.53  Aligned_cols=49  Identities=16%  Similarity=0.116  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q psy2348          25 YLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGL   78 (131)
Q Consensus        25 ~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~I   78 (131)
                      .+.+.++.++.+|++++.+....  |. + +. ...+|.++++++.+.++++||
T Consensus        15 ~~~~~~~~~~~~G~~~vEl~~~~--~~-~-~~-~~~~~~~~~~~~~~~~~~~gl   63 (270)
T 3aam_A           15 GVAGAVEEATALGLTAFQIFAKS--PR-S-WR-PRALSPAEVEAFRALREASGG   63 (270)
T ss_dssp             HHHHHHHHHHHHTCSCEEEESSC--TT-C-CS-CCCCCHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHcCCCEEEEeCCC--CC-c-Cc-CCCCCHHHHHHHHHHHHHcCC
Confidence            57889999999999998882222  21 1 22 236788999999999999999

>4hz8_A Beta-glucosidase; BGLB,BGL, hydrolase, glycosid barrel, carbohydrate/sugar binding; HET: BGC; 1.14A {Uncultured bacterium} PDB: 4hz7_A* 4hz6_A* 3fj0_A* 3cmj_A 3fiz_A* 3fiy_A*

Probab=88.18  E-value=1.1  Score=37.18  Aligned_cols=64  Identities=8%  Similarity=0.150  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHcCCCEEEE--EeeccCCCCCCCCCCCCCCHHHH---HHHHHHHHHcCCeEeecc---CCcchHHH
Q psy2348          24 TYLKEILPILAYTGATSLLI--EWEDTLPYSLGFDNTNPFRETEI---FIILAAAESNGLASIPLV---PLYSDMDF   92 (131)
Q Consensus        24 ~~lk~~i~~la~~g~n~~~l--~~ed~~p~~~~~~~~~~YT~eei---keiv~yA~~~~IevIP~i---~~~GH~~~   92 (131)
                      ...++=|++|+++|+|.+++  .|..-+|- |    .|...++.+   +++++.+.++||++|..+   ++|-+++.
T Consensus        58 hry~eDi~l~~~lG~~~~R~si~W~Ri~P~-g----~g~~N~~gl~~Y~~lid~l~~~GI~p~vtL~H~dlP~~L~~  129 (444)
T 4hz8_A           58 HRYEQDLDLMRQLGLKTYRFSIAWARIQPD-S----SRQINQRGLDFYRRLVEGLHKRDILPMATLYHWDLPQWVED  129 (444)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEECCHHHHSCS-T----TCCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBHHHHH
T ss_pred             hhHHHHHHHHHhcCCCEEEEeccHHHcCcC-C----CCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCCHHHhh
Confidence            34678899999999999876  45555553 1    146677666   899999999999999988   78988874

>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1

Probab=88.11  E-value=1.4  Score=34.11  Aligned_cols=26  Identities=19%  Similarity=0.133  Sum_probs=24.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          60 PFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        60 ~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      ..+.++..+++..|++.|.+|++|+-
T Consensus       110 ~l~~~~~~~~I~~~~~~G~~v~~EvG  135 (251)
T 1qwg_A          110 DISLEERNNAIKRAKDNGFMVLTEVG  135 (251)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             cCCHHHHHHHHHHHHHCCCEEeeecc
Confidence            68899999999999999999999983

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=88.10  E-value=0.18  Score=45.26  Aligned_cols=102  Identities=12%  Similarity=-0.001  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHcCCCEEEEE--eecc-C-------CCCCC-----CCCCCCC------C--HHHHHHHHHHHHHcCCeEee
Q psy2348          26 LKEILPILAYTGATSLLIE--WEDT-L-------PYSLG-----FDNTNPF------R--ETEIFIILAAAESNGLASIP   82 (131)
Q Consensus        26 lk~~i~~la~~g~n~~~l~--~ed~-~-------p~~~~-----~~~~~~Y------T--~eeikeiv~yA~~~~IevIP   82 (131)
                      +.+.++.|+.+|+|.++|-  ++.. .       -+.|+     ..-.+.|      |  .+|.|++|+.|.++||.||=
T Consensus       471 i~~~LdyLk~LGvtaI~L~Pi~e~~~~de~~~~~~~wGYd~~dy~ap~~~y~~dp~Gt~~~~dfk~LV~~aH~~GI~VIL  550 (921)
T 2wan_A          471 VKTGIDSLKELGITTVQLQPVEEFNSIDETQPDTYNWGYDPRNYNVPEGAYATTPEGTARITELKQLIQSLHQQRIGVNM  550 (921)
T ss_dssp             CBCHHHHHHHHTCCEEEESCCEEESSSCTTSTTSCCCCCSEEEEEEECGGGSSCSSTTHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             cchhhHHHHHcCCCEEEeCCccccCcccccccCcCCcCCCCcCCCCCCcccccCCCCCccHHHHHHHHHHHHHcCCEEEE
Confidence            3456899999999998762  1111 0       01232     0000112      2  69999999999999999986


Q ss_pred             ccCCcchHH-----HHh-ccccccc-ccccC------CCCceecCCChhHHHHHHHHHh
Q psy2348          83 LVPLYSDMD-----FVL-KVKEFAK-MRQNF------NDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        83 ~i~~~GH~~-----~~L-~~p~~~~-l~e~~------~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      -+ .+.|+.     +.- ..|.|-. ....+      ...+.|+-.+|++.+++.+.+.
T Consensus       551 Dv-V~NHt~~~~~~~f~~~~p~y~~~~~~~g~~~~~~g~~~dln~~~p~Vr~~i~d~l~  608 (921)
T 2wan_A          551 DV-VYNHTFDVMVSDFDKIVPQYYYRTDSNGNYTNGSGCGNEFATEHPMAQKFVLDSVN  608 (921)
T ss_dssp             EE-CTTCCSCSSSSHHHHHSTTTTBCBCTTSCBCCTTSSSCCBCTTSHHHHHHHHHHHH
T ss_pred             EE-ccccccccccccccCCCCCeEEEcCCCCcccCCCCcccccccCCHHHHHHHHHHHH
Confidence            54 344442     221 1343321 11111      1123588889999999887754

>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482}

Probab=87.87  E-value=0.61  Score=40.21  Aligned_cols=61  Identities=16%  Similarity=0.204  Sum_probs=45.3

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      +.+...+.+++|+.+|+|+++++  |....|-+|...   +=-.+++.++++.|+++||.||-...
T Consensus        35 ~~e~w~~dl~~mK~~G~N~Vrt~v~W~~hEP~~G~yd---f~gl~~l~~fl~la~e~GL~VIl~~g   97 (612)
T 3d3a_A           35 PKEYWEHRIKMCKALGMNTICLYVFWNFHEPEEGRYD---FAGQKDIAAFCRLAQENGMYVIVRPG   97 (612)
T ss_dssp             CGGGHHHHHHHHHHHTCCEEEEECCHHHHCSSTTCCC---CSGGGCHHHHHHHHHHTTCEEEEECC
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEcChHHhcCCCCCccC---hhHHHHHHHHHHHHHHCCCEEEEecC
Confidence            57899999999999999999987  333334444211   11136678889999999999998764

>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A*

Probab=87.77  E-value=1.1  Score=41.31  Aligned_cols=78  Identities=9%  Similarity=0.024  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHcCCCEEEEE--eeccCC--------CCCC-C---------CCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348          24 TYLKEILPILAYTGATSLLIE--WEDTLP--------YSLG-F---------DNTNPFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus        24 ~~lk~~i~~la~~g~n~~~l~--~ed~~p--------~~~~-~---------~~~~~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      ..|.+-||.|+.+|++.++|-  ++....        ..|+ +         .+..+=|.+|.|++|+-|.++||+||=-
T Consensus       853 ~~I~~kLdYLk~LGITaIwL~Pi~~s~~~~~~~~~~~d~GYdi~D~y~lGf~i~~~yGt~edfk~LV~alH~~GI~VIlD  932 (1108)
T 3ttq_A          853 VVIAKNADVFNNWGITSFEMAPQYRSSGDHTFLDSTIDNGYAFTDRYDLGFNTPTKYGTDGDLRATIQALHHANMQVMAD  932 (1108)
T ss_dssp             HHHHHTHHHHHHHTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSSSSCCSSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEECCCccCCCccccccccccCCcccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence            368899999999999997652  111000        1121 1         1233448999999999999999999955


Q ss_pred             cCCcchHHHHhcccccccc
Q psy2348          84 VPLYSDMDFVLKVKEFAKM  102 (131)
Q Consensus        84 i~~~GH~~~~L~~p~~~~l  102 (131)
                      + .+-|+...=.++.|...
T Consensus       933 v-V~NHta~~de~e~f~~~  950 (1108)
T 3ttq_A          933 V-VDNQVYNLPGKEVVSAT  950 (1108)
T ss_dssp             E-CCSEECCCCEEEEEEEE
T ss_pred             e-ccccccCCCCcceeEEE
Confidence            4 56676533334444433

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=87.76  E-value=0.79  Score=39.74  Aligned_cols=100  Identities=16%  Similarity=0.167  Sum_probs=58.6

Q ss_pred             HHHHHHHHcCCCEEEEE----eec---cCC---C-CCC-----CCCCCCC---------CHHHHHHHHHHHHHcCCeEee
Q psy2348          28 EILPILAYTGATSLLIE----WED---TLP---Y-SLG-----FDNTNPF---------RETEIFIILAAAESNGLASIP   82 (131)
Q Consensus        28 ~~i~~la~~g~n~~~l~----~ed---~~p---~-~~~-----~~~~~~Y---------T~eeikeiv~yA~~~~IevIP   82 (131)
                      +.+|.|+.+|+|.++|-    ...   ..|   | .|+     ..-.+.|         |.+|.|++|+-|.++||.||=
T Consensus       255 ~~LdyLk~LGvtaI~L~Pi~~~~~~de~~~~~~~~wGYd~~dy~a~~~~yg~~p~~g~~~~~dfk~LV~~aH~~GI~VIl  334 (718)
T 2e8y_A          255 SGLAYVKELGVTHVELLPVNDFAGVDEEKPLDAYNWGYNPLHFFAPEGSYASNPHDPQTRKTELKQMINTLHQHGLRVIL  334 (718)
T ss_dssp             CHHHHHHHHTCSEEEESCCEEESSSCTTSGGGCCCCCCSEEEEEEECSTTSSCSSSHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             hhhHHHHHcCCCEEEECCccccCccccccccccCcCCCCccCCCCcCcccccCCCCccccHHHHHHHHHHHHHCCCEEEE
Confidence            47899999999998762    111   011   1 232     0001123         369999999999999999986


Q ss_pred             ccCCcchHHH----Hhc--cccccc-ccccC------CCCceecCCChhHHHHHHHHHh
Q psy2348          83 LVPLYSDMDF----VLK--VKEFAK-MRQNF------NDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        83 ~i~~~GH~~~----~L~--~p~~~~-l~e~~------~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      -+ .+.|+..    ++.  .|.|-. ....+      ...+.|+-.+|++.+++.+.+.
T Consensus       335 Dv-V~NHt~~~~~~~f~~~~p~y~~~~~~~g~~~n~~~~g~dln~~np~Vr~~i~d~~~  392 (718)
T 2e8y_A          335 DV-VFNHVYKRENSPFEKTVPGYFFRHDECGKPSNGTGVGNDIASERRMARKFIADCVV  392 (718)
T ss_dssp             EE-CTTCCSSGGGSHHHHHSTTTSBCBCTTSSBCCTTSSSCCBCTTSHHHHHHHHHHHH
T ss_pred             EE-ecccccCcccccccccCCCeEEecCCCCcccCCCCcccccccCCHHHHHHHHHHHH
Confidence            54 3444321    221  343321 11111      1123578889999999888754

>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*

Probab=87.70  E-value=0.91  Score=33.61  Aligned_cols=60  Identities=8%  Similarity=0.047  Sum_probs=43.8

Q ss_pred             eeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeE
Q psy2348          10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLAS   80 (131)
Q Consensus        10 Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~Iev   80 (131)
                      -|+|+-+.+      .+.+.++.++++|++++.+...+  |. . +. ....+.++++++.+.++++||++
T Consensus         4 ~G~~~~~~~------~~~~~l~~~~~~G~~~iEl~~~~--~~-~-~~-~~~~~~~~~~~~~~~l~~~gl~~   63 (287)
T 2x7v_A            4 IGAHMPISK------GFDRVPQDTVNIGGNSFQIFPHN--AR-S-WS-AKLPSDEAATKFKREMKKHGIDW   63 (287)
T ss_dssp             EEEECCCTT------CGGGHHHHHHHTTCSEEEECSCC--CS-S-SC-CCCCCHHHHHHHHHHHHHHTCCG
T ss_pred             eeeeecccc------CHHHHHHHHHHcCCCEEEEeCCC--cc-c-cc-ccCCCHHHHHHHHHHHHHcCCCc
Confidence            467776654      26778999999999998883322  11 0 22 23578899999999999999994

>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A

Probab=87.58  E-value=0.67  Score=39.97  Aligned_cols=60  Identities=17%  Similarity=-0.012  Sum_probs=43.7

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEEe--eccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          22 SLTYLKEILPILAYTGATSLLIEW--EDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~~--ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      +.++..+.+.+|...|+|++.+++  ...-|-+|...   +=-..|+.++++.|++.||-||-..
T Consensus        30 p~~~W~d~l~kmKa~G~NtV~~yv~W~~hEP~~G~fd---F~g~~dL~~fl~~a~~~Gl~Vilrp   91 (595)
T 4e8d_A           30 PPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFH---FEGDLDLEKFLQIAQDLGLYAIVRP   91 (595)
T ss_dssp             CGGGHHHHHHHHHHTTCCEEEEECCHHHHCSBTTBCC---CSGGGCHHHHHHHHHHTTCEEEEEC
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeccHHHcCCCCCeec---ccchhhHHHHHHHHHHcCCEEEEec
Confidence            478899999999999999998864  22223333210   1013479999999999999999873

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=86.24  E-value=0.96  Score=39.28  Aligned_cols=27  Identities=22%  Similarity=0.255  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          63 ETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        63 ~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      .+|.|++|+.|.++||.||=-+ .+.|+
T Consensus       378 ~~efk~LV~~aH~~GIkVIlDv-V~NHt  404 (884)
T 4aio_A          378 IIEYRQMVQALNRIGLRVVMDV-VYNHL  404 (884)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEE-CCSBC
T ss_pred             HHHHHHHHHHHHhcCCceeeee-ccccc
Confidence            5789999999999999998654 34555

>3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str}

Probab=86.14  E-value=1  Score=39.57  Aligned_cols=70  Identities=19%  Similarity=0.135  Sum_probs=48.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEE--eecc-CCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIE--WEDT-LPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~--~ed~-~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~   91 (131)
                      .+...+.+.++.|+.+|+|++++-  ++.. -.+.|+      ..+..+=|.+|++++++-|.++||.||=.+ .+-|+.
T Consensus        12 Gtf~~i~~~LdyL~~LGvt~V~LsPi~e~~~~s~~GYd~~Dy~~vdp~lGt~edfk~LV~~aH~~GI~VilDv-V~NH~s   90 (704)
T 3hje_A           12 MKFSEIRNRLDYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNTINDELGGEEEYIRLIDEAKSKGLGIIQDI-VPNHMA   90 (704)
T ss_dssp             CCHHHHHTTHHHHHHHTCSEEEECCCEEESTTCSSSCSEEEEEEECGGGTHHHHHHHHHHHHHHHTCEEEEEE-CCSEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCccCCCCCCCCCCCcCCCCcCccCCCHHHHHHHHHHHHHCCCEEEEee-cccccc
Confidence            567888899999999999998762  1211 011222      112234479999999999999999998665 355554

>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A*

Probab=85.71  E-value=2.1  Score=36.45  Aligned_cols=55  Identities=13%  Similarity=0.072  Sum_probs=43.7

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      +.+..++=+++|+.+|+|.++++  +   ++.   ..+.      .++.+.|++.||-||=++++|+|.
T Consensus        85 ~~e~~~rDi~LmK~~GiN~VRvy--~---~~P---~~~~------d~~ldl~~~~GIyVIle~~~p~~~  139 (555)
T 2w61_A           85 DPKICLRDIPFLKMLGVNTLRVY--A---IDP---TKSH------DICMEALSAEGMYVLLDLSEPDIS  139 (555)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEC--C---CCT---TSCC------HHHHHHHHHTTCEEEEESCBTTBS
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEe--c---cCC---CCCh------HHHHHHHHhcCCEEEEeCCCCCcc
Confidence            67888999999999999999994  1   221   1112      578888999999999999999875

>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis}

Probab=85.51  E-value=1.8  Score=37.14  Aligned_cols=65  Identities=11%  Similarity=0.134  Sum_probs=48.8

Q ss_pred             CceeEEeec----CCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348           8 KEVLVHLDL----KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus         8 ~~Rg~mlD~----~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      .-||+-++-    .+..++.+.+++.+..|+.+|+|.+++.   .+|.          +    .++.+.|.++||-|+.+
T Consensus       284 ~l~G~n~h~~~~~~G~~~~~~~~~~dl~~~k~~G~N~vR~~---h~p~----------~----~~~~~~cD~~Gl~V~~e  346 (667)
T 3cmg_A          284 PLHGVCRHQDRAEVGNALRPQHHEEDVALMREMGVNAIRLA---HYPQ----------A----TYMYDLMDKHGIVTWAE  346 (667)
T ss_dssp             CCEEEECCSCBTTTBTCCCHHHHHHHHHHHHHTTCCEEEET---TSCC----------C----HHHHHHHHHHTCEEEEE
T ss_pred             EEEEEEcCcCccccccCCCHHHHHHHHHHHHHCCCCEEEec---CCCC----------C----HHHHHHHHHCCCEEEEc
Confidence            356654422    2457789999999999999999999983   1221          1    57899999999999998


Q ss_pred             cCCcch
Q psy2348          84 VPLYSD   89 (131)
Q Consensus        84 i~~~GH   89 (131)
                      +..-+|
T Consensus       347 ~~~~~~  352 (667)
T 3cmg_A          347 IPFVGP  352 (667)
T ss_dssp             CCCBCC
T ss_pred             ccccCc
Confidence            875554

>3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A

Probab=85.50  E-value=2.2  Score=39.10  Aligned_cols=69  Identities=12%  Similarity=0.090  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eecc--------CCCCCC-CC---------CCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDT--------LPYSLG-FD---------NTNPFRETEIFIILAAAESNGLASI   81 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~--------~p~~~~-~~---------~~~~YT~eeikeiv~yA~~~~IevI   81 (131)
                      +-..|.+-|+.|+.+|++.++|-  ++..        ..+.|+ ..         ...+=|.+|.|++|+-|.++||+||
T Consensus       684 t~~gi~~kldyLk~LGVtaIwL~Pi~~~~~~~~~~~~~~~~GYd~~d~~~~~~~i~~~~Gt~~efk~lV~alH~~GI~VI  763 (1039)
T 3klk_A          684 TNVRIAQNADLFKSWGITTFELAPQYNSSKDGTFLDSIIDNGYAFTDRYDLGMSTPNKYGSDEDLRNALQALHKAGLQAI  763 (1039)
T ss_dssp             HHHHHHHTHHHHHHTTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSCSSCBTTBCHHHHHHHHHHHHHTTCEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECccccCCcccccccCcCCCCCCcccccccccCCCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence            56678888999999999997651  1110        011122 10         1123379999999999999999999


Q ss_pred             eccCCcchHH
Q psy2348          82 PLVPLYSDMD   91 (131)
Q Consensus        82 P~i~~~GH~~   91 (131)
                      =-+ .+-|+.
T Consensus       764 lDv-V~NHta  772 (1039)
T 3klk_A          764 ADW-VPDQIY  772 (1039)
T ss_dssp             EEE-CCSEEC
T ss_pred             EEE-ccCCcC
Confidence            544 466764

>4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A*

Probab=85.26  E-value=0.25  Score=39.00  Aligned_cols=57  Identities=11%  Similarity=-0.039  Sum_probs=39.9

Q ss_pred             HHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348          27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLY   87 (131)
Q Consensus        27 k~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~   87 (131)
                      ++.|+.|+.+|+|.+++-+.... +..   .++....+.+.++++.|+++||-||-.+-.+
T Consensus        88 ~~di~~ik~~G~N~VRi~~~~~~-~~~---~~~~~~l~~ld~~v~~a~~~Gi~Vild~H~~  144 (359)
T 4hty_A           88 KKHFEVIRSWGANVVRVPVHPRA-WKE---RGVKGYLELLDQVVAWNNELGIYTILDWHSI  144 (359)
T ss_dssp             HHHHHHHHHTTCSEEEEEECHHH-HHH---HHHHHHHHHHHHHHHHHHHTTCEEEEEECCE
T ss_pred             HHHHHHHHhcCCCEEEEeccHHH-hhc---cCCHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            56788999999999999653110 000   0112235678999999999999999776554

>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A

Probab=85.23  E-value=1.5  Score=37.37  Aligned_cols=55  Identities=18%  Similarity=0.207  Sum_probs=44.2

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD   89 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH   89 (131)
                      +..++.+.+.+-+..|..+|+|.+++.   .+|..              .++.+.|.+.||-||.|+...|+
T Consensus       305 g~~~~~~~~~~di~l~k~~g~N~vR~~---hyp~~--------------~~~~~lcD~~Gi~V~~E~~~~g~  359 (605)
T 3lpf_A          305 GKGFDNVLMVHDHALMDWIGANSYRTS---HYPYA--------------EEMLDWADEHGIVVIDETAAVGF  359 (605)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTCCEEEEC---SSCCC--------------HHHHHHHHHHTCEEEEECSCBCC
T ss_pred             cccCCHHHHHHHHHHHHHCCCcEEEec---CCCCc--------------HHHHHHHHhcCCEEEEecccccc
Confidence            556788889999999999999999972   12221              36889999999999999987654

>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}

Probab=84.95  E-value=2.2  Score=31.24  Aligned_cols=54  Identities=20%  Similarity=0.114  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHcCCCEEEEEeeccC--CCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348          26 LKEILPILAYTGATSLLIEWEDTL--PYSLG-FDNTNPFRETEIFIILAAAESNGLASI   81 (131)
Q Consensus        26 lk~~i~~la~~g~n~~~l~~ed~~--p~~~~-~~~~~~YT~eeikeiv~yA~~~~IevI   81 (131)
                      +.+.++.++.+|++++.+-.....  +|.|. +  ...+|.++++++.+.++++||+++
T Consensus        24 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~i~   80 (262)
T 3p6l_A           24 LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVF--DFNLDAQTQKEIKELAASKGIKIV   80 (262)
T ss_dssp             HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEE--STTCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHcCCCEEeecCCcccccccccccc--cccCCHHHHHHHHHHHHHcCCeEE
Confidence            788999999999999877543211  11111 1  134678888888888888888764

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=84.94  E-value=2.3  Score=32.93  Aligned_cols=60  Identities=12%  Similarity=0.079  Sum_probs=44.9

Q ss_pred             eecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe-eccCCcc
Q psy2348          14 LDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI-PLVPLYS   88 (131)
Q Consensus        14 lD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI-P~i~~~G   88 (131)
                      .|+.-=+-+.+...+.++.+.+.|...+++-       .      ..++.+|.++|.++|++.|+.|| |.  ++|
T Consensus        71 ~Dv~ii~vp~~~~~~~v~ea~~~Gi~~vVi~-------t------~G~~~~~~~~l~~~A~~~gi~viGPN--c~G  131 (294)
T 2yv1_A           71 ANASVIFVPAPFAKDAVFEAIDAGIELIVVI-------T------EHIPVHDTMEFVNYAEDVGVKIIGPN--TPG  131 (294)
T ss_dssp             CCEEEECCCHHHHHHHHHHHHHTTCSEEEEC-------C------SCCCHHHHHHHHHHHHHHTCEEECSS--CCE
T ss_pred             CCEEEEccCHHHHHHHHHHHHHCCCCEEEEE-------C------CCCCHHHHHHHHHHHHHcCCEEEcCC--Cce
Confidence            3555445667788888889999998876651       1      13477889999999999999999 75  544

>1uhv_A Beta-xylosidase; family 39 glycoside hydrolase, xylan, xylose, covalent glycosyl-enzyme intermediate; 2.10A {Thermoanaerobacterium saccharolyticum} SCOP: b.71.1.2 c.1.8.3 PDB: 1px8_A

Probab=84.83  E-value=0.29  Score=40.21  Aligned_cols=74  Identities=14%  Similarity=-0.046  Sum_probs=49.8

Q ss_pred             eEEeecCCCCCCHHHHHHHHHHHH-HcCCCEEEEE--eec-cCCCCCCC-CCCC--CCCHHHHHHHHHHHHHcCCeEeec
Q psy2348          11 LVHLDLKGAPPSLTYLKEILPILA-YTGATSLLIE--WED-TLPYSLGF-DNTN--PFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus        11 g~mlD~~~~~~~~~~lk~~i~~la-~~g~n~~~l~--~ed-~~p~~~~~-~~~~--~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      .+-.+-....++. ..++.++.|+ ++|+|.+++.  |++ +.+|.-.- ...|  .|..+-+.++++.|+++||+++..
T Consensus        21 ~~g~~~~~~~~~~-~~~e~l~~~~~~~G~~~vR~~~~w~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~~~~~~Gi~p~v~   99 (500)
T 1uhv_A           21 CVGTGRLGLALQK-EYIETLKYVKENIDFKYIRGHGLLCDDVGIYREDVVGDEVKPFYNFTYIDRIFDSFLEIGIRPFVE   99 (500)
T ss_dssp             EEECSCGGGGGBH-HHHHHHHHHHTTSCCCEEECSCTTSTTTCCEEEEEETTEEEEEECCHHHHHHHHHHHHHTCEECEE
T ss_pred             hcccccchhhhCH-HHHHHHHHHHHhcCceEEEEecCcCCCceeeecccccCCCceEEehhHHHHHHHHHHHCCCEEEEE
Confidence            3333333334444 4578899998 9999999987  664 22332100 0123  677889999999999999999987


Q ss_pred             cC
Q psy2348          84 VP   85 (131)
Q Consensus        84 i~   85 (131)
                      +.
T Consensus       100 l~  101 (500)
T 1uhv_A          100 IG  101 (500)
T ss_dssp             EC
T ss_pred             Ec
Confidence            74

>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3

Probab=84.56  E-value=2.3  Score=38.71  Aligned_cols=56  Identities=16%  Similarity=0.061  Sum_probs=46.0

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      +..++.+.+++-|..|+.+|+|.++..   .+|.              -.++.+.|.++||-|+.+.++..|.
T Consensus       343 G~~~~~e~~~~dl~lmK~~G~N~VR~~---hyp~--------------~~~fydlcDe~Gi~V~~E~~~~~~g  398 (1024)
T 1yq2_A          343 GRVFDEAGAREDLALMKRFNVNAIRTS---HYPP--------------HPRLLDLADEMGFWVILECDLETHG  398 (1024)
T ss_dssp             TTCCCHHHHHHHHHHHHHTTCCEEEET---TSCC--------------CHHHHHHHHHHTCEEEEECSCBCGG
T ss_pred             ccCCCHHHHHHHHHHHHHcCCCEEEec---CCCC--------------CHHHHHHHHHCCCEEEEcCCcccCC
Confidence            555799999999999999999999984   2221              1578899999999999999877665

>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A*

Probab=84.45  E-value=0.69  Score=42.17  Aligned_cols=101  Identities=9%  Similarity=0.022  Sum_probs=60.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEe--eccCCCCCCCCCCCCCC-HHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-c
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIEW--EDTLPYSLGFDNTNPFR-ETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-V   96 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~~--ed~~p~~~~~~~~~~YT-~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-~   96 (131)
                      |+.++.++.+.+|...|+|++.+++  .-.-|-+|..    -++ ..++.++++.|++.||-||=-.--.=+.|+-.. .
T Consensus        53 p~pe~W~d~l~kmKa~GlNtV~tYV~Wn~hEP~eG~f----dFsg~~dL~~fl~la~e~GL~VILRpGPYi~aEw~~GG~  128 (1003)
T 3og2_A           53 PVPSLYLDVFHKIKALGFNTVSFYVDWALLEGKPGRF----RADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGF  128 (1003)
T ss_dssp             CCGGGHHHHHHHHHTTTCCEEEEECCHHHHCSBTTBC----CCCGGGCSHHHHHHHHHHTCEEEEEEESCCCTTBGGGGC
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEecchhhcCCCCCEe----cccchhhHHHHHHHHHHcCCEEEecCCcceeeecCCCCc
Confidence            3468899999999999999998875  2222323321    011 347999999999999999964322223332221 2


Q ss_pred             cccccccccCCCCceecCCChhHHHHHHHHHhhh
Q psy2348          97 KEFAKMRQNFNDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        97 p~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      |.+-.  ..   +..++..+|.-.+-++..+++|
T Consensus       129 P~WL~--~~---~~~lRt~~p~yl~~~~~~~~~l  157 (1003)
T 3og2_A          129 PGWLQ--RV---KGKLRTDAPDYLHATDNYVAHI  157 (1003)
T ss_dssp             CGGGG--GC---CSCTTSCCHHHHHHHHHHHHHH
T ss_pred             cchhc--cC---CCeecCCCHHHHHHHHHHHHHH
Confidence            22211  11   1356777777655555555443

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=84.30  E-value=2.1  Score=33.28  Aligned_cols=57  Identities=9%  Similarity=0.063  Sum_probs=42.7

Q ss_pred             eecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe-ec
Q psy2348          14 LDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI-PL   83 (131)
Q Consensus        14 lD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI-P~   83 (131)
                      .|+.-=+-+.+...+.++.+.+.|...+++-.             .-++.+|.++|.++|++.++.|| |.
T Consensus        72 ~DvaIi~vp~~~~~~~v~ea~~~Gi~~vVi~t-------------~G~~~~~~~~l~~~A~~~gi~viGPN  129 (297)
T 2yv2_A           72 INTSIVFVPAPFAPDAVYEAVDAGIRLVVVIT-------------EGIPVHDTMRFVNYARQKGATIIGPN  129 (297)
T ss_dssp             CCEEEECCCGGGHHHHHHHHHHTTCSEEEECC-------------CCCCHHHHHHHHHHHHHHTCEEECSS
T ss_pred             CCEEEEecCHHHHHHHHHHHHHCCCCEEEEEC-------------CCCCHHHHHHHHHHHHHcCCEEEcCC
Confidence            34443445567788888889999988766511             13477889999999999999999 65

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=83.64  E-value=2.8  Score=32.36  Aligned_cols=63  Identities=8%  Similarity=-0.067  Sum_probs=47.1

Q ss_pred             eecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe-eccCCcchHH
Q psy2348          14 LDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI-PLVPLYSDMD   91 (131)
Q Consensus        14 lD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI-P~i~~~GH~~   91 (131)
                      .|+.--+-+.+...+.++.+.+.|...+++-.             .-++.+|.+++.++|++.++.|| |.  ++|-..
T Consensus        65 ~Dv~Ii~vp~~~~~~~~~ea~~~Gi~~vVi~t-------------~G~~~~~~~~l~~~a~~~gi~vigPN--c~Gii~  128 (288)
T 1oi7_A           65 VDASIIFVPAPAAADAALEAAHAGIPLIVLIT-------------EGIPTLDMVRAVEEIKALGSRLIGGN--CPGIIS  128 (288)
T ss_dssp             CSEEEECCCHHHHHHHHHHHHHTTCSEEEECC-------------SCCCHHHHHHHHHHHHHHTCEEEESS--SCEEEE
T ss_pred             CCEEEEecCHHHHHHHHHHHHHCCCCEEEEEC-------------CCCCHHHHHHHHHHHHHcCCEEEeCC--CCeEEc
Confidence            35544456677888899999999988666511             13577889999999999999999 76  666544

>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*

Probab=83.64  E-value=5.1  Score=28.59  Aligned_cols=63  Identities=13%  Similarity=0.036  Sum_probs=42.0

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC----------CCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLG----------FDNTNPFRETEIFIILAAAESNGLASI   81 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~----------~~~~~~YT~eeikeiv~yA~~~~IevI   81 (131)
                      +..-+.+.+.++++.++.+|. ...+++-...|..+.          ...-...|.++++++.+++++.|+.|+
T Consensus       172 g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~  244 (245)
T 3c8f_A          172 GWSDDDDSAHRLGEFTRDMGN-VEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKVM  244 (245)
T ss_dssp             TTTCCHHHHHHHHHHHHHHCC-EEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHHHTTTCCBC
T ss_pred             CCCCCHHHHHHHHHHHHhcCC-CceeEEEeccccChhHHHhhCcccccccCCCCCHHHHHHHHHHHHhcCCeec
Confidence            334568899999999999986 222333222222110          112236899999999999999999876

>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A

Probab=83.60  E-value=3  Score=31.42  Aligned_cols=61  Identities=18%  Similarity=0.176  Sum_probs=42.6

Q ss_pred             eeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCe
Q psy2348          10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLA   79 (131)
Q Consensus        10 Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~Ie   79 (131)
                      -|++.-..+.    ..+.+.++.++.+|++++.+....  |. . +. ...++.++++++.+.++++||+
T Consensus         8 lG~~~~~~~~----~~~~~~l~~~~~~G~~~vEl~~~~--~~-~-~~-~~~~~~~~~~~~~~~l~~~gl~   68 (303)
T 3aal_A            8 IGSHVSMSGK----KMLLAASEEAASYGANTFMIYTGA--PQ-N-TK-RKSIEELNIEAGRQHMQAHGIE   68 (303)
T ss_dssp             EEEECCCCTT----TTHHHHHHHHHHTTCSEEEEESSC--TT-C-CC-CCCSGGGCHHHHHHHHHHTTCC
T ss_pred             eceeeecCCC----ccHHHHHHHHHHcCCCEEEEcCCC--CC-c-cC-CCCCCHHHHHHHHHHHHHcCCc
Confidence            4556555432    257889999999999998883222  11 1 21 2357788999999999999995

>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A*

Probab=83.18  E-value=2  Score=39.00  Aligned_cols=61  Identities=10%  Similarity=0.018  Sum_probs=44.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEe--eccCCCCCCCCCCCCCC-HHHHHHHHHHHHHcCCeEeeccC
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIEW--EDTLPYSLGFDNTNPFR-ETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~~--ed~~p~~~~~~~~~~YT-~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      |+.+...+.+.+|...|+|++.++.  .-.-|-+|..    -+| ..++.++++.|++.||-||=..-
T Consensus        33 p~~~~W~d~l~kmka~G~NtV~~yvfW~~hEP~~G~f----dF~g~~dL~~fl~~a~e~Gl~ViLr~G   96 (971)
T 1tg7_A           33 PVASLYIDIFEKVKALGFNCVSFYVDWALLEGNPGHY----SAEGIFDLQPFFDAAKEAGIYLLARPG   96 (971)
T ss_dssp             CCGGGHHHHHHHHHTTTCCEEEEECCHHHHCSBTTBC----CCCGGGCSHHHHHHHHHHTCEEEEECC
T ss_pred             CchHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCee----cccchHHHHHHHHHHHHcCCEEEEecC
Confidence            3468899999999999999998864  3333444421    111 24689999999999999996543

>3ahx_A Beta-glucosidase A; cellulases, glycosyl hydrolase, manganese enhancement, hydro; HET: 7PE; 1.90A {Clostridium cellulovorans}

Probab=83.15  E-value=3  Score=34.53  Aligned_cols=63  Identities=16%  Similarity=0.199  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHcCCCEEEEE--eeccCCCCCCCCCCCCCCHHHH---HHHHHHHHHcCCeEeecc---CCcchHH
Q psy2348          24 TYLKEILPILAYTGATSLLIE--WEDTLPYSLGFDNTNPFRETEI---FIILAAAESNGLASIPLV---PLYSDMD   91 (131)
Q Consensus        24 ~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~~~~~~~YT~eei---keiv~yA~~~~IevIP~i---~~~GH~~   91 (131)
                      ...++=|++|+++|+|.+++-  |..-+|- |    .|.+.++-+   +++++.+.++||++|..+   ++|-.+.
T Consensus        59 ~~~~eDi~lm~~~G~~~~R~si~Wsri~P~-G----~g~~n~~G~~~y~~lid~l~~~GI~p~vtL~h~d~P~~l~  129 (453)
T 3ahx_A           59 HRYKEDVQLLKSLGIKSYRFSIAWPRIFPK-G----FGEINQKGIQFYRDLIDELIKNDIEPAITIYHWDLPQKLQ  129 (453)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCHHHHCTT-S----SSSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBHHHH
T ss_pred             HHHHHHHHHHHHhCCCeEecccCHHHhccC-C----CCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCCccHhHh
Confidence            346788999999999998864  4455553 1    357885554   899999999999999876   5665543

>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13

Probab=83.11  E-value=3.4  Score=35.10  Aligned_cols=106  Identities=10%  Similarity=0.052  Sum_probs=66.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEeeccC-CCCCCC-CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcc---hHHHHhc
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIEWEDTL-PYSLGF-DNTNPFRETEIFIILAAAESNGLASIPLVPLYS---DMDFVLK   95 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~-p~~~~~-~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~G---H~~~~L~   95 (131)
                      .+-+.+++.++.++.+|++.+.|  .+-. ...|++ .+...+-.  ++.++++++++|+.+..-++-..   -+...-+
T Consensus       209 ~te~~v~~~ad~~~~~G~~~~~I--DdgW~~~~Gdw~~d~~kFP~--lk~lvd~lh~~Glk~Giw~~P~~v~~~S~ly~~  284 (564)
T 1zy9_A          209 LTWEETLKNLKLAKNFPFEVFQI--DDAYEKDIGDWLVTRGDFPS--VEEMAKVIAENGFIPGIWTAPFSVSETSDVFNE  284 (564)
T ss_dssp             CCHHHHHHHHHHGGGTTCSEEEE--CTTSEEETTEEEEECTTCCC--HHHHHHHHHHTTCEEEEEECTTEEETTCHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCcEEEE--CcccccccCCcccCcccCCC--HHHHHHHHHHCCCEEEEEeCCCccCCCChhHHh
Confidence            48899999999999999998777  2211 011221 22333443  99999999999999876654321   1111112


Q ss_pred             cccccccc---------ccCCCCceecCCChhHHHHHHHHHhhh
Q psy2348          96 VKEFAKMR---------QNFNDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        96 ~p~~~~l~---------e~~~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      +|.+---.         .++.....+++++|++.+++.+.++++
T Consensus       285 ~pdw~v~~~G~~~~~~~~W~~~~~~lD~t~P~a~~~~~~~~~~~  328 (564)
T 1zy9_A          285 HPDWVVKENGEPKMAYRNWNKKIYALDLSKDEVLNWLFDLFSSL  328 (564)
T ss_dssp             CGGGBCEETTEECEEEEETTEEEEEBCTTCHHHHHHHHHHHHHH
T ss_pred             CCCeEEecCCeeeeeecccCCceeecCCCCHHHHHHHHHHHHHH
Confidence            45432111         011112468899999999999888764

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}

Probab=82.74  E-value=5.3  Score=29.19  Aligned_cols=48  Identities=17%  Similarity=0.106  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348          25 YLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI   81 (131)
Q Consensus        25 ~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI   81 (131)
                      .+.+.++.++.+|++++.+-..+ +|+        .++.++++++.+.++++||+++
T Consensus        31 ~~~~~l~~~~~~G~~~vEl~~~~-~~~--------~~~~~~~~~~~~~l~~~gl~i~   78 (257)
T 3lmz_A           31 DLDTTLKTLERLDIHYLCIKDFH-LPL--------NSTDEQIRAFHDKCAAHKVTGY   78 (257)
T ss_dssp             CHHHHHHHHHHTTCCEEEECTTT-SCT--------TCCHHHHHHHHHHHHHTTCEEE
T ss_pred             CHHHHHHHHHHhCCCEEEEeccc-CCC--------CCCHHHHHHHHHHHHHcCCeEE
Confidence            46789999999999998774431 121        2455566666666666666554

>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}

Probab=82.57  E-value=2  Score=32.94  Aligned_cols=75  Identities=12%  Similarity=0.069  Sum_probs=45.7

Q ss_pred             CCCCCCCCceeEEeec-CCCCCCHHHHH------HHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy2348           1 MVTPSTFKEVLVHLDL-KGAPPSLTYLK------EILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAA   73 (131)
Q Consensus         1 ~~D~P~f~~Rg~mlD~-~~~~~~~~~lk------~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA   73 (131)
                      |++.|+--.-|++.-. +... ....+.      +.++.++.+|++++.+-..+...+.      ...+.++++++.+.+
T Consensus         2 ~~~~~~~mklg~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~------~~~~~~~~~~l~~~l   74 (335)
T 2qw5_A            2 MTKLPATSDIYISFFMFTTNL-QPDNLDYRRIVVAHIKKLQRFGYSGFEFPIAPGLPEN------YAQDLENYTNLRHYL   74 (335)
T ss_dssp             -----CCCCEEEEGGGTCSCC-CTTCHHHHHHHHHHHHHHHHTTCCEEEEECCCCCGGG------HHHHHHHHHHHHHHH
T ss_pred             cccchhhcceeEEEeeecCCC-ChhhhhccchHHHHHHHHHHhCCCEEEEecCCCcccc------cccchHHHHHHHHHH
Confidence            3444444445666655 3322 122344      8999999999999888553321111      123458999999999


Q ss_pred             HHcCCe---Eee
Q psy2348          74 ESNGLA---SIP   82 (131)
Q Consensus        74 ~~~~Ie---vIP   82 (131)
                      +++||+   |.-
T Consensus        75 ~~~gL~~~~i~~   86 (335)
T 2qw5_A           75 DSEGLENVKIST   86 (335)
T ss_dssp             HHTTCTTCEEEE
T ss_pred             HHCCCCcceeEE
Confidence            999999   764

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=82.40  E-value=3.4  Score=31.99  Aligned_cols=54  Identities=19%  Similarity=0.096  Sum_probs=42.0

Q ss_pred             HHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348          30 LPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV   96 (131)
Q Consensus        30 i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~   96 (131)
                      +......|++.+.|-             ...++.+++++++++|++.|++++-|+.+.--++.+++.
T Consensus       135 i~ea~~~GAD~VlLi-------------~a~L~~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~  188 (272)
T 3tsm_A          135 VYEARSWGADCILII-------------MASVDDDLAKELEDTAFALGMDALIEVHDEAEMERALKL  188 (272)
T ss_dssp             HHHHHHTTCSEEEEE-------------TTTSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHTTS
T ss_pred             HHHHHHcCCCEEEEc-------------ccccCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc
Confidence            444555666665551             136789999999999999999999999988888888763

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}

Probab=82.38  E-value=7.3  Score=30.11  Aligned_cols=73  Identities=21%  Similarity=0.178  Sum_probs=59.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEEeec--cCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348          19 APPSLTYLKEILPILAYTGATSLLIEWED--TLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV   96 (131)
Q Consensus        19 ~~~~~~~lk~~i~~la~~g~n~~~l~~ed--~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~   96 (131)
                      |.-+.+..+++++.+++.|+..+.+++..  |.||.  +++   ...+.++.+.++|++.||.++=++=-+-+.+++..+
T Consensus        47 ~~~~~e~a~~~a~~~k~~ga~~~k~~~~kprts~~~--f~g---~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~  121 (276)
T 1vs1_A           47 SVESWEQVREAALAVKEAGAHMLRGGAFKPRTSPYS--FQG---LGLEGLKLLRRAGDEAGLPVVTEVLDPRHVETVSRY  121 (276)
T ss_dssp             BCCCHHHHHHHHHHHHHHTCSEEECBSSCCCSSTTS--CCC---CTHHHHHHHHHHHHHHTCCEEEECCCGGGHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCCEEEeEEEeCCCChhh--hcC---CCHHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHHh
Confidence            67799999999999999999988776643  33321  221   138999999999999999999999999999998554

>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}

Probab=82.37  E-value=7.8  Score=28.62  Aligned_cols=60  Identities=18%  Similarity=0.097  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCC---CCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348          23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNT---NPFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~---~~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      ++.+++.|+..+.+|+..+.++... .++.+..+..   -....+-++++.++|+++||++.=|
T Consensus       103 ~~~~~~~i~~a~~lGa~~v~~~~g~-~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE  165 (287)
T 3kws_A          103 MDTMKEIIAAAGELGSTGVIIVPAF-NGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTSVIFE  165 (287)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECSCC-TTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred             HHHHHHHHHHHHHcCCCEEEEecCc-CCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            4788999999999999988774210 0111000000   0123577889999999999998876

>3f5l_A Beta-glucosidase; beta-alpha-barrels, glycosidase, hydrolase; HET: LB2 MES; 1.37A {Oryza sativa japonica group} PDB: 3aht_A* 3ahv_A* 3f5i_A* 3f5j_A* 3f5k_A* 3f4v_A* 2rgm_A* 2rgl_A* 3scr_A* 3scs_A* 3scp_A* 3scq_A* 3scu_A* 3scn_A* 3sco_A* 3sct_A* 3scv_A* 3scw_A*

Probab=82.32  E-value=2.8  Score=35.03  Aligned_cols=64  Identities=9%  Similarity=0.144  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHcCCCEEEE--EeeccCCCCCCCCCCCCCCHHHH---HHHHHHHHHcCCeEeecc---CCcchHHH
Q psy2348          24 TYLKEILPILAYTGATSLLI--EWEDTLPYSLGFDNTNPFRETEI---FIILAAAESNGLASIPLV---PLYSDMDF   92 (131)
Q Consensus        24 ~~lk~~i~~la~~g~n~~~l--~~ed~~p~~~~~~~~~~YT~eei---keiv~yA~~~~IevIP~i---~~~GH~~~   92 (131)
                      ...|+=|++|+++|+|.+++  .|..-+|-.     .|.+.++-+   +++++.+.++||+.|..+   ++|-+++.
T Consensus        73 hrykeDi~lm~elG~~~yRfsIsWsRI~P~g-----~g~~n~~Gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~  144 (481)
T 3f5l_A           73 HRYKEDVNLMKSLNFDAYRFSISWSRIFPDG-----EGRVNQEGVAYYNNLINYLLQKGITPYVNLYHYDLPLALEK  144 (481)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCHHHHCTTS-----SSCCCHHHHHHHHHHHHHHHHTTCEEEEESCSSCCBHHHHH
T ss_pred             hhHHHHHHHHHHcCCCEEEecCcHHHhCcCC-----CCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            45678899999999999876  455555532     145786666   899999999999999876   68877764

>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A {Halothermothrix orenii}

Probab=82.21  E-value=3  Score=34.60  Aligned_cols=63  Identities=11%  Similarity=0.216  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHcCCCEEEE--EeeccCCCCCCCCCCCCCCHHHH---HHHHHHHHHcCCeEeecc---CCcchHH
Q psy2348          24 TYLKEILPILAYTGATSLLI--EWEDTLPYSLGFDNTNPFRETEI---FIILAAAESNGLASIPLV---PLYSDMD   91 (131)
Q Consensus        24 ~~lk~~i~~la~~g~n~~~l--~~ed~~p~~~~~~~~~~YT~eei---keiv~yA~~~~IevIP~i---~~~GH~~   91 (131)
                      ...|+=|++|+++|+|.+++  .|..-+|-.     .|...++-+   +++++.+.++||+.+.-+   ++|-+++
T Consensus        66 hry~eDi~Lm~elG~~~yRfSIsWsRI~P~g-----~g~~N~~Gl~fY~~lid~l~~~GIeP~vTL~H~dlP~~L~  136 (458)
T 3ta9_A           66 HLYREDIELMKEIGIRSYRFSTSWPRILPEG-----KGRVNQKGLDFYKRLVDNLLKANIRPMITLYHWDLPQALQ  136 (458)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEECCHHHHSTTS-----SSCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBHHHH
T ss_pred             HhHHHHHHHHHHcCCCEEEecCcHHHhCcCC-----CCCcCHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCHhHH
Confidence            44678899999999999876  455555532     156777666   799999999999999887   7888876

>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A 2bfg_A*

Probab=81.99  E-value=0.88  Score=37.29  Aligned_cols=74  Identities=14%  Similarity=-0.025  Sum_probs=50.2

Q ss_pred             eEEeecCCCCCCHHHHHHHHHHHH-HcCCCEEEEE--eeccC-CCCCCC-CCCC--CCCHHHHHHHHHHHHHcCCeEeec
Q psy2348          11 LVHLDLKGAPPSLTYLKEILPILA-YTGATSLLIE--WEDTL-PYSLGF-DNTN--PFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus        11 g~mlD~~~~~~~~~~lk~~i~~la-~~g~n~~~l~--~ed~~-p~~~~~-~~~~--~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      .+-+.-....++.+ .++.|+.|+ .+|+|.+++.  |+|.. .|+-.- ...|  .|..+-+.++++.|+++||+++..
T Consensus        21 ~~g~g~~~~~~r~~-~~e~l~~~~~~~G~~~vR~~~~w~D~~~~~~~~~~~~~g~~~~n~~~~D~~~~~~~~~Gi~p~v~   99 (503)
T 1w91_A           21 CVGTGRLGLALQKE-YLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIE   99 (503)
T ss_dssp             EEECSCGGGGGBHH-HHHHHHHHHHHTCCSEEECSCTTSTTTCCEEEEESSSSEEEEECCHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccccccchhhhCHH-HHHHHHHHHHhcCCeEEEeccCcCCCceEeecccccCCCceeeccHHHHHHHHHHHHCCCEEEEE
Confidence            44444444555544 567888887 8999999987  55421 221100 0123  677789999999999999999987


Q ss_pred             cC
Q psy2348          84 VP   85 (131)
Q Consensus        84 i~   85 (131)
                      +.
T Consensus       100 l~  101 (503)
T 1w91_A          100 FG  101 (503)
T ss_dssp             EC
T ss_pred             Ec
Confidence            65

>3s5u_A Putative uncharacterized protein; crispr, crispr adaptation mechanism, NEW spacer aquisition, binding, DNA binding protein; 2.70A {Enterococcus faecalis}

Probab=81.87  E-value=1.7  Score=32.67  Aligned_cols=62  Identities=15%  Similarity=0.167  Sum_probs=46.8

Q ss_pred             ceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348           9 EVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI   81 (131)
Q Consensus         9 ~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI   81 (131)
                      .-|+++|.. .--..+-+.++++..+++.-+.+.+-.       + +  ..++|.+|+.++.+|+...++.|+
T Consensus       133 ~~gikie~~-~~~~~e~i~~~lki~~el~~kkllvfv-------N-l--~~YLt~eEl~~L~e~i~~~~i~vL  194 (220)
T 3s5u_A          133 ALGIKIETT-SDTIFEKVMEITQVHRYLSKKKLLIFI-------N-A--CTYLTEDEVQQVVEYISLNNVDVL  194 (220)
T ss_dssp             HTTCEECCT-TCCHHHHHHHHHHHHHHCTTCCEEEEE-------S-G--GGGCCHHHHHHHHHHHHHTTCCEE
T ss_pred             HcCeEeccc-CCCHHHHHHHHHHHHHHhcCCCEEEEE-------C-h--HHhCCHHHHHHHHHHHHHhCCeEE
Confidence            456777776 555567777888888887776655522       1 2  379999999999999999999986

>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A*

Probab=81.66  E-value=2.1  Score=37.33  Aligned_cols=60  Identities=17%  Similarity=0.135  Sum_probs=43.4

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEEe--eccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          22 SLTYLKEILPILAYTGATSLLIEW--EDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~~--ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      +.++.++.+.+|...|+|++.+|+  ...-|-+|...   |=-..|+.++++.|++.||-||=..
T Consensus        38 p~~~W~d~l~kmKa~G~NtV~~yv~W~~hEP~~G~fd---F~g~~DL~~fl~~a~~~GL~ViLr~   99 (654)
T 3thd_A           38 PRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQ---FSEDHDVEYFLRLAHELGLLVILRP   99 (654)
T ss_dssp             CGGGHHHHHHHHHHTTCSEEEEECCHHHHCSBTTBCC---CSGGGCHHHHHHHHHHTTCEEEEEC
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEEechhhcCCCCCccC---ccchHHHHHHHHHHHHcCCEEEecc
Confidence            378899999999999999998864  22223333211   1012469999999999999999765

>1qox_A Beta-glucosidase; hydrolase, cellulose degradation; 2.7A {Bacillus circulans} SCOP: c.1.8.4

Probab=81.64  E-value=3.1  Score=34.42  Aligned_cols=61  Identities=16%  Similarity=0.250  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHcCCCEEEEE--eeccCCCCCCCCCCCCCCHH---HHHHHHHHHHHcCCeEeecc---CCcchHH
Q psy2348          26 LKEILPILAYTGATSLLIE--WEDTLPYSLGFDNTNPFRET---EIFIILAAAESNGLASIPLV---PLYSDMD   91 (131)
Q Consensus        26 lk~~i~~la~~g~n~~~l~--~ed~~p~~~~~~~~~~YT~e---eikeiv~yA~~~~IevIP~i---~~~GH~~   91 (131)
                      .++=|++|+++|+|.+++-  |...+|- |    .|.+.++   =.+++++.+.++||++|..+   ++|-+++
T Consensus        60 ~~eDi~lm~~~G~~~~R~si~W~ri~P~-G----~g~~n~~Gl~~y~~~id~l~~~gI~p~vtL~h~d~P~~l~  128 (449)
T 1qox_A           60 VEEDVQLLKDLGVKVYRFSISWPRVLPQ-G----TGEVNRAGLDYYHRLVDELLANGIEPFCTLYHWDLPQALQ  128 (449)
T ss_dssp             HHHHHHHHHHHTCSEEEEECCHHHHSTT-S----SSSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBHHHH
T ss_pred             hHHHHHHHHhcCCCeEEecCcHHHhCcC-C----CCCcCHHHHHHHHHHHHHHHHcCCeEEEEeCCCcccHHHH
Confidence            5788999999999998864  4555553 1    3578884   45899999999999999866   5665543

>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A

Probab=81.39  E-value=1.6  Score=33.92  Aligned_cols=59  Identities=22%  Similarity=0.139  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCC-CCCC--CCCCHHHHHHHHHHHHHcCCeEee
Q psy2348          23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLG-FDNT--NPFRETEIFIILAAAESNGLASIP   82 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~-~~~~--~~YT~eeikeiv~yA~~~~IevIP   82 (131)
                      ++.+.+.++..+..|+..+++- .++||+... -++.  -.++.++++++-+.|+++||.|++
T Consensus        60 l~~l~~~l~~~~~~gi~~~ri~-s~~f~~ft~~~~~w~~~~~~~~~~~~~~~~~~~~gi~i~~  121 (301)
T 2j6v_A           60 LRDLERILRFNADHGFALFRIG-QHLIPFASHPLFPYDWEGAYEEELARLGALARAFGQRLSM  121 (301)
T ss_dssp             HHHHHHHHHHHHHHTCCEEECC-GGGSTTTTSTTCCSCHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEec-cCcccccCCCcccCCcCCCCHHHHHHHHHHHHHcCCeEEE
Confidence            4667777888888898887662 356787543 1111  145679999999999999998764

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=81.07  E-value=11  Score=28.81  Aligned_cols=74  Identities=24%  Similarity=0.243  Sum_probs=58.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEEee--ccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIEWE--DTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK   95 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~e--d~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~   95 (131)
                      .+.-+.+..+++++.+++.|+.-+....-  +|.||.  ++  | ...+.++.+-++|++.||.++=++=-+-+.+++..
T Consensus        31 c~~~~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~--~~--g-~~~egl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~  105 (262)
T 1zco_A           31 CSIESREQIMKVAEFLAEVGIKVLRGGAFKPRTSPYS--FQ--G-YGEKALRWMREAADEYGLVTVTEVMDTRHVELVAK  105 (262)
T ss_dssp             SBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTS--CC--C-CTHHHHHHHHHHHHHHTCEEEEECCCGGGHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEEecccCCCccc--cc--C-ccHHHHHHHHHHHHHcCCcEEEeeCCHHhHHHHHh
Confidence            56778999999999999999987766442  222332  33  2 24999999999999999999999999999998855


Q ss_pred             c
Q psy2348          96 V   96 (131)
Q Consensus        96 ~   96 (131)
                      +
T Consensus       106 ~  106 (262)
T 1zco_A          106 Y  106 (262)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2o9p_A Beta-glucosidase B; family 1 glycoside hydrolase; 2.10A {Paenibacillus polymyxa} PDB: 2o9t_A* 2z1s_A* 2jie_A* 2o9r_A*

Probab=81.03  E-value=2.9  Score=34.65  Aligned_cols=61  Identities=18%  Similarity=0.214  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHcCCCEEEEE--eeccCCCCCCCCCCCCCCH---HHHHHHHHHHHHcCCeEeecc---CCcchHH
Q psy2348          25 YLKEILPILAYTGATSLLIE--WEDTLPYSLGFDNTNPFRE---TEIFIILAAAESNGLASIPLV---PLYSDMD   91 (131)
Q Consensus        25 ~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~~~~~~~YT~---eeikeiv~yA~~~~IevIP~i---~~~GH~~   91 (131)
                      ..++=|++|+++|+|.+++-  |..-+|-      .|.+.+   +=.+++++.+.++||++|..+   ++|-+++
T Consensus        68 ~~~eDi~lm~~~G~~~~R~sisWsRi~P~------~g~~n~~Gl~~y~~lid~l~~~GI~p~vtL~H~d~P~~L~  136 (454)
T 2o9p_A           68 HFKEDVQLMKQLGFLHYRFSVAWPRIMPA------AGIINEEGLLFYEHLLDEIELAGLIPMLTLYHWDLPQWIE  136 (454)
T ss_dssp             HHHHHHHHHHTTTCCEEEEECCHHHHCSS------TTCCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCCBHHHH
T ss_pred             HHHHHHHHHHhcCCceEEecccHHhhCCC------CCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCCccHHHH
Confidence            46888999999999998864  4555554      356777   557999999999999999866   5665554

>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}

Probab=80.44  E-value=4.5  Score=28.16  Aligned_cols=59  Identities=12%  Similarity=-0.056  Sum_probs=38.5

Q ss_pred             CCHHHHHHHHHHHHHc-CC-CEEEEEeeccCCCCCC----------CCCCCCCCHHH--HHHHHHHHHHcCCeEe
Q psy2348          21 PSLTYLKEILPILAYT-GA-TSLLIEWEDTLPYSLG----------FDNTNPFRETE--IFIILAAAESNGLASI   81 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~-g~-n~~~l~~ed~~p~~~~----------~~~~~~YT~ee--ikeiv~yA~~~~IevI   81 (131)
                      -+.+.+.++++.++.+ |+ ..+.+--  ..|....          +.+-...|.++  +.++.++|+++|+.++
T Consensus       107 ~n~~~~~~~~~~~~~~~g~~~~~~l~~--~~p~g~~~~~~l~~~y~~~~~~~~~~e~~~l~~~~~~~~~~g~~~~  179 (182)
T 3can_A          107 ADEKNIKLSAEFLASLPRHPEIINLLP--YHDIGKGKHAKLGSIYNPKGYKMQTPSEEVQQQCIQILTDYGLKAT  179 (182)
T ss_dssp             CSHHHHHHHHHHHHHSSSCCSEEEEEE--CCC------------------CCBCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             CCHHHHHHHHHHHHhCcCccceEEEec--CcccCHHHHHHhCCcCcccCCCCCCHHHHHHHHHHHHHHHcCCceE
Confidence            4678899999999998 87 6655421  1222110          11123567777  9999999999999875

>3gnp_A OS03G0212800 protein; beta-alpha barrel, glycosidase, hydrolase; HET: SOG; 1.80A {Oryza sativa subsp} PDB: 3gno_A* 3gnr_A*

Probab=80.38  E-value=3.4  Score=34.56  Aligned_cols=64  Identities=14%  Similarity=0.258  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHcCCCEEEE--EeeccCCCCCCCCCCCCCCHHHH---HHHHHHHHHcCCeEeecc---CCcchHHH
Q psy2348          24 TYLKEILPILAYTGATSLLI--EWEDTLPYSLGFDNTNPFRETEI---FIILAAAESNGLASIPLV---PLYSDMDF   92 (131)
Q Consensus        24 ~~lk~~i~~la~~g~n~~~l--~~ed~~p~~~~~~~~~~YT~eei---keiv~yA~~~~IevIP~i---~~~GH~~~   92 (131)
                      ...|+=|++|+++|+|.+++  .|..-+|-.     .|.+.++-|   +++++.+.++||+.|.-+   ++|-+++.
T Consensus        70 hrY~eDi~lm~elG~~~yRfsI~WsRI~P~g-----~g~~N~~Gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~  141 (488)
T 3gnp_A           70 HRFEEDIQLMADMGMDAYRFSIAWSRIYPNG-----VGQVNQAGIDHYNKLIDALLAKGIQPYVTLYHWDLPQALED  141 (488)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCHHHHCTTS-----SSSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBHHHHH
T ss_pred             hhHHHHHHHHHHcCCCEEEecccHHHeeeCC-----CCCcCHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHH
Confidence            44678899999999999876  455555532     157788664   599999999999998876   78877764

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=80.37  E-value=13  Score=30.21  Aligned_cols=59  Identities=14%  Similarity=0.065  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348          19 APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP   82 (131)
Q Consensus        19 ~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP   82 (131)
                      .-+.++.|++.+......|.+.-.+.+..  |  + -+.|..||.+++++|++.|+++++-||=
T Consensus       217 ~~~d~~~l~~~l~~~~~~~~~~k~ivl~~--p--~-NPtG~~~s~~~l~~i~~la~~~~~~li~  275 (500)
T 3tcm_A          217 WGLETSDVKKQLEDARSRGINVRALVVIN--P--G-NPTGQVLAEENQYDIVKFCKNEGLVLLA  275 (500)
T ss_dssp             SBCCHHHHHHHHHHHHHTTCEEEEEEEES--S--C-TTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCHHHHHHHHHHHHhcCCCceEEEEEC--C--C-CCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence            36789999998887666555443344432  2  1 2345789999999999999999988774

>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A*

Probab=80.26  E-value=9.6  Score=29.38  Aligned_cols=74  Identities=14%  Similarity=0.034  Sum_probs=50.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHh
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVL   94 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L   94 (131)
                      .+.+.+.+.++.+...|+..+.+...........-.....+|.++++++++.|+++|+.|.--.....-...++
T Consensus       169 ~~~~~~~~~v~~~~~~g~~~ik~~~~g~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l  242 (423)
T 3feq_A          169 DGVEGVRLAVREEIQKGATQIKIMASGGVASPTDPIANTQYSEDEIRAIVDEAEAANTYVMAHAYTGRAIARAV  242 (423)
T ss_dssp             CSHHHHHHHHHHHHHTTCSSEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCCEEEEEEEHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeccCCcCCCCCCcccccCCHHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence            46788888999888899988877665432111111122368999999999999999998876555333333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	131
d1jaka1	356	beta-N-acetylhexosaminidase {Streptomyces plicatus	100.0
d1nowa1	353	beta-hexosaminidase B {Human (Homo sapiens) [TaxId	100.0
d1qbaa3	443	Bacterial chitobiase (beta-N-acetylhexosaminidase)	100.0
d2gjxa1	362	beta-hexosaminidase A {Human (Homo sapiens) [TaxId	100.0
d1yhta1	344	Dispersin B, DspB {Actinobacillus actinomycetemcom	100.0
d1rh9a1	370	Beta-mannanase {Tomato (Lycopersicon esculentum) [	97.26
d1kwga2	393	A4 beta-galactosidase {Thermus thermophilus [TaxId	96.79
d1wkya2	297	Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449	96.74
d2bhua3	420	Glycosyltrehalose trehalohydrolase, central domain	96.63
d1uuqa_	410	Exomannosidase {Cellvibrio mixtus [TaxId: 39650]}	96.57
d1eh9a3	400	Glycosyltrehalose trehalohydrolase, central domain	96.56
d1m7xa3	396	1,4-alpha-glucan branching enzyme, central domain	96.52
d1ud2a2	390	Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta	96.38
d1gcya2	357	G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase	96.31
d1bf2a3	475	Isoamylase, central domain {Pseudomonas amyloderam	96.22
d2c0ha1	350	endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed	96.16
d2aaaa2	381	Fungal alpha-amylases {Aspergillus niger, acid amy	96.07
d1lwha2	391	4-alpha-glucanotransferase {Thermotoga maritima [T	96.04
d1j0ha3	382	Neopullulanase, central domain {Bacillus stearothe	96.0
d2d3na2	394	Bacterial alpha-amylase {Bacillus sp. 707 [TaxId:	95.99
d1ht6a2	347	Plant alpha-amylase {Barley (Hordeum vulgare), AMY	95.9
d1hjsa_	332	Beta-1,4-galactanase {Thielavia heterothallica, ak	95.8
d1qnra_	344	Beta-mannanase {Trichoderma reesei [TaxId: 51453]}	95.78
d1ea9c3	382	Maltogenic amylase, central domain {Bacillus sp.,	95.56
d2guya2	381	Fungal alpha-amylases {Aspergillus oryzae, Taka-am	95.55
d1edga_	380	Endoglucanase CelA {Clostridium cellulolyticum [Ta	95.51
d1vjza_	325	Endoglucanase homologue TM1752 {Thermotoga maritim	95.51
d3bmva4	406	Cyclodextrin glycosyltransferase {Thermoanaerobact	95.42
d1hvxa2	393	Bacterial alpha-amylase {Bacillus stearothermophil	95.42
d1ur4a_	387	Beta-1,4-galactanase {Bacillus licheniformis [TaxI	95.21
d1mxga2	361	Bacterial alpha-amylase {Archaeon Pyrococcus woese	95.17
d1wzla3	382	Maltogenic amylase, central domain {Thermoactinomy	95.16
d1h3ga3	422	Cyclomaltodextrinase, central domain {Flavobacteri	95.14
d1uoka2	479	Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 13	95.12
d1ua7a2	344	Bacterial alpha-amylase {Bacillus subtilis [TaxId:	95.02
d1tg7a5	354	Beta-galactosidase LacA, N-terminal domain {Penici	94.88
d1qhoa4	407	Cyclodextrin glycosyltransferase {Bacillus stearot	94.84
d1m53a2	478	Isomaltulose synthase PalI {Klebsiella sp., lx3 [T	94.83
d1g94a2	354	Bacterial alpha-amylase {Pseudoalteromonas halopla	94.71
d1e43a2	393	Bacterial alpha-amylase {Chimera (Bacillus amyloli	94.68
d1g5aa2	554	Amylosucrase {Neisseria polysaccharea [TaxId: 489]	94.64
d1gjwa2	572	Maltosyltransferase {Thermotoga maritima [TaxId: 2	94.44
d1ecea_	358	Endocellulase E1 {Acidothermus cellulolyticus [Tax	94.34
d1wzaa2	409	Bacterial alpha-amylase {Halothermothrix orenii [T	94.21
d1bqca_	302	Beta-mannanase {Thermomonospora fusca [TaxId: 2021	94.09
d1hx0a2	403	Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982	93.84
d1qwga_	251	(2r)-phospho-3-sulfolactate synthase ComA {Archaeo	93.78
d1ceoa_	340	Endoglucanase CelC {Clostridium thermocellum [TaxI	93.73
d1jaea2	378	Animal alpha-amylase {Yellow mealworm (Tenebrio mo	93.55
d1zy9a2	348	Alpha-galactosidase GalA catalytic domain {Thermot	93.5
d2pb1a1	394	Exo-beta-(1,3)-glucanase {Yeast (Candida albicans)	93.41
d1qtwa_	285	Endonuclease IV {Escherichia coli [TaxId: 562]}	93.01
d1h4pa_	408	Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom	92.87
d2vzsa5	339	Exochitosanase CsxA {Amycolatopsis orientalis [Tax	92.84
d1foba_	334	Beta-1,4-galactanase {Fungus (Aspergillus aculeatu	92.74
d1tvna1	293	Endoglucanase Cel5a {Pseudoalteromonas haloplankti	92.19
d1h1na_	305	Endocellulase EngI {Thermoascus aurantiacus [TaxId	92.08
d1yq2a5	297	beta-Galactosidase, domain 3 {Arthrobacter sp. c2-	91.89
d7a3ha_	300	Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId	91.84
d1x7fa2	244	Outer surface protein, N-terminal domain {Bacillus	91.79
d1bhga3	304	beta-Glucuronidase, domain 3 {Human (Homo sapiens)	91.14
d2choa2	310	Glucosaminidase GH84, catalytic domain {Bacteroide	91.14
d1ji1a3	432	Maltogenic amylase, central domain {Thermoactinomy	90.98
d2fhfa5	563	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	90.45
d2je8a5	348	Five-domain beta-mannosidase, domain 3 {Bacteroide	90.4
d1iv8a2	653	Maltooligosyl trehalose synthase {Archaeon Sulfolo	89.97
d1g01a_	357	Alkaline cellulase K catalytic domain {Bacillus sp	89.95
d1jz8a5	292	beta-Galactosidase, domain 3 {Escherichia coli [Ta	89.81
d1vlia2	295	Spore coat polysaccharide biosynthesis protein Sps	89.52
d2cbia2	317	Hyaluronidase catalytic domain {Clostridium perfri	89.46
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	89.04
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	88.34
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	87.74
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	87.48
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	86.7
d1r57a_	102	Hypothetical protein SA2309 {Staphylococcus aureus	86.61
d1hl2a_	295	N-acetylneuraminate lyase {Escherichia coli [TaxId	86.34
d1vema2	417	Bacterial beta-amylase {Bacillus cereus [TaxId: 13	86.27
d1w3ia_	293	2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus	85.36
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	85.12
d2q02a1	271	Putative cytoplasmic protein STM4435 {Salmonella t	84.91
d1vffa1	423	Beta-glucosidase A {Archaeon Pyrococcus horikoshii	84.89
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	84.72
d1r7aa2	434	Sucrose phosphorylase {Bifidobacterium adolescenti	84.55
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	83.92
d2j78a1	443	Beta-glucosidase A {Thermotoga maritima [TaxId: 23	83.38
d1e4ia_	447	Beta-glucosidase A {Bacillus polymyxa [TaxId: 1406	82.82
d1egza_	291	Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId:	82.32
d1e8ga2	268	Vanillyl-alcohol oxidase {Fungus (Penicillium simp	81.91
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	81.5
d1i60a_	278	Hypothetical protein IolI {Bacillus subtilis [TaxI	80.47

>d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase {Streptomyces plicatus [TaxId: 1922]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: beta-N-acetylhexosaminidase
species: Streptomyces plicatus [TaxId: 1922]

Probab=100.00  E-value=1.7e-36  Score=244.56  Aligned_cols=124  Identities=16%  Similarity=0.140  Sum_probs=106.5

Q ss_pred             CCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCC--CCC---------------CCCCCCCCHHHHHHH
Q psy2348           7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPY--SLG---------------FDNTNPFRETEIFII   69 (131)
Q Consensus         7 f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~--~~~---------------~~~~~~YT~eeikei   69 (131)
                      |++||+|||++|||+++++||++||.||.+|+|.+++|+.|...|  ...               ...+++||++|||+|
T Consensus         1 f~~RG~mlD~aR~f~~~~~i~~~id~ma~~K~N~lh~Hl~D~~~~r~e~~~~p~l~~~ga~~~~~~~~~~~yT~~di~~i   80 (356)
T d1jaka1           1 YAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEI   80 (356)
T ss_dssp             CSEEEEEEECSSSCCCHHHHHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHH
T ss_pred             CCccCeEEEcCCCCcCHHHHHHHHHHHHHcCCeEEEEEEecCCCcceeecCCchhhhccCccccCCCCCCccCHHHHHHH
Confidence            899999999999999999999999999999999999999986433  221               123678999999999


Q ss_pred             HHHHHHcCCeEeeccCCcchHHHHhc-cccccccccc-------CCCCceecCCChhHHHHHHHHHhhh
Q psy2348          70 LAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKMRQN-------FNDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        70 v~yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~e~-------~~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      ++||++|||+||||||+|||+.++++ +|++.+-...       ....+.|||++|+|++|+++|++|+
T Consensus        81 v~ya~~rgI~viPEid~PgH~~~~~~~~pel~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~E~  149 (356)
T d1jaka1          81 VRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGEL  149 (356)
T ss_dssp             HHHHHHTTCEEEEECCCSSSCHHHHHHCGGGSTTSCCCCCCCSCCCSCCCCCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCeEeecCCCcchhHHHHHhCccccccCCCCccccccCCCCcccccCchHHHHHHHHHHHHH
Confidence            99999999999999999999999997 7777653221       1234689999999999999999997

>d1nowa1 c.1.8.6 (A:200-552) beta-hexosaminidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: beta-hexosaminidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-36  Score=240.59  Aligned_cols=124  Identities=12%  Similarity=0.167  Sum_probs=106.7

Q ss_pred             CCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecc--CCCCCC----------CCCCCCCCHHHHHHHHHHHH
Q psy2348           7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYSLG----------FDNTNPFRETEIFIILAAAE   74 (131)
Q Consensus         7 f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~--~p~~~~----------~~~~~~YT~eeikeiv~yA~   74 (131)
                      |++||+|||++|+++++++||++||.||.+|+|.+++|+.|+  |++...          .+.+++||++|+|+|++||+
T Consensus         1 f~~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~~e~~~~P~l~~~g~~~~~~~yT~~d~~~lv~yA~   80 (353)
T d1nowa1           1 FSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYAR   80 (353)
T ss_dssp             CSEEEEEEESSSSCCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCBCCSSCHHHHHHHSSSTTSCBCHHHHHHHHHHHH
T ss_pred             CCccCeEEEcCCCCcCHHHHHHHHHHHHHcCCcEEEEEEecCCCceeccCCCcchhhcCCCCCCCCcCHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999886  444322          34568999999999999999


Q ss_pred             HcCCeEeeccCCcchHHHHhc-ccccccccc----cCCCCceecCCChhHHHHHHHHHhhh
Q psy2348          75 SNGLASIPLVPLYSDMDFVLK-VKEFAKMRQ----NFNDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        75 ~~~IevIP~i~~~GH~~~~L~-~p~~~~l~e----~~~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      +|||+||||||+|||+.++++ +|++..-..    .....++|||++|+|++|+++|++|+
T Consensus        81 ~rgI~iiPEid~PGH~~~~~~~~pel~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~v~~e~  141 (353)
T d1nowa1          81 LRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFLTTFFKEI  141 (353)
T ss_dssp             HTTCEEEEEEEESSSCTTHHHHSTTCEEECCC----CCSEEEECTTCHHHHHHHHHHHHHH
T ss_pred             HCCCEEEecccchhhHHHHHHHhhhhcCCccccCCcCCCccccCCCchhhHHHHHHHHHHH
Confidence            999999999999999999998 677643211    11234689999999999999999997

>d1qbaa3 c.1.8.6 (A:338-780) Bacterial chitobiase (beta-N-acetylhexosaminidase) {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: Bacterial chitobiase (beta-N-acetylhexosaminidase)
species: Serratia marcescens [TaxId: 615]

Probab=100.00  E-value=6.1e-36  Score=245.59  Aligned_cols=124  Identities=17%  Similarity=0.209  Sum_probs=103.1

Q ss_pred             CCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCC--CCC------------------------------
Q psy2348           7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPY--SLG------------------------------   54 (131)
Q Consensus         7 f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~--~~~------------------------------   54 (131)
                      |++||+|||++|||+++++||++||.||.+|+|.+.+|+.|...|  ...                              
T Consensus         1 f~~RG~mlD~aR~f~~~~~ik~~id~ma~~KlN~lH~HltD~qg~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~   80 (443)
T d1qbaa3           1 FPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLPQYGQGP   80 (443)
T ss_dssp             CSEEEEEEECSSSCCCHHHHHHHHHHHHHTTCCEEEEECBCSSCBCBCCTTCTHHHHTTTEECSCTTCSSSBCCCTTSCS
T ss_pred             CCccCEEEEcCCCCcCHHHHHHHHHHHHHcCCcEEEEEEecCCCceeeeCCcchhhhhcccccccccccccccccccCCC
Confidence            899999999999999999999999999999999999999887432  111                              


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc-cc-ccccccc-------------------------CC
Q psy2348          55 FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV-KE-FAKMRQN-------------------------FN  107 (131)
Q Consensus        55 ~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~-p~-~~~l~e~-------------------------~~  107 (131)
                      ...+++||++|||+||+||++|||+||||||+|||+.++++. |+ |.++...                         ..
T Consensus        81 ~~~~~~YT~~ei~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~p~~y~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  160 (443)
T d1qbaa3          81 DVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSMEARYKKLHAAGKEQEANEFRLVDPTDTSNTTSVQFFN  160 (443)
T ss_dssp             SCEECCBCHHHHHHHHHHHHHTTCEEEEEEEESSSCHHHHHHHHHHHHHHHHTTCHHHHHTTCCCCTTCCCCCCCTTSCC
T ss_pred             CCCCCccCHHHHHHHHHHHHHcCCEEeeccchHHHHHHHHHhChhhccccccccCccccccccccCcccCCCCCcceecc
Confidence            123568999999999999999999999999999999999973 32 2222110                         01


Q ss_pred             CCceecCCChhHHHHHHHHHhhh
Q psy2348         108 DTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus       108 ~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      ..+.|||++|+|++|+++|++||
T Consensus       161 ~~~~L~~~~~~t~~f~~~vl~E~  183 (443)
T d1qbaa3         161 RQSYLNPCLDSSQRFVDKVIGEI  183 (443)
T ss_dssp             GGGSCCTTCHHHHHHHHHHHHHH
T ss_pred             CCccccCCchHHHHHHHHHHHHH
Confidence            23679999999999999999997

>d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: beta-hexosaminidase A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=238.40  Aligned_cols=124  Identities=11%  Similarity=0.104  Sum_probs=105.4

Q ss_pred             CCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecc--CCCCCC----------C-CCCCCCCHHHHHHHHHHH
Q psy2348           7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYSLG----------F-DNTNPFRETEIFIILAAA   73 (131)
Q Consensus         7 f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~--~p~~~~----------~-~~~~~YT~eeikeiv~yA   73 (131)
                      |++||+|||++|+++++++||++||.||.+|+|.+.+|+.|.  |++...          . +.+++||++|||+||+||
T Consensus         1 f~~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHltD~~~~r~e~~~~p~l~~~ga~~~~~~~yT~~d~~elv~yA   80 (362)
T d2gjxa1           1 FPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYA   80 (362)
T ss_dssp             CSEEEEEEETTTSCCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCBCCSSCTHHHHHHSSCTTTSCBCHHHHHHHHHHH
T ss_pred             CCccCeEEecCCCCcCHHHHHHHHHHHHHcCCcEEEEEEEcCCCceeccCCCchhhhcCCcCCCCCccCHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999886  444321          1 136799999999999999


Q ss_pred             HHcCCeEeeccCCcchHHHHhc-ccccccccccC----CCCceecCCChhHHHHHHHHHhhh
Q psy2348          74 ESNGLASIPLVPLYSDMDFVLK-VKEFAKMRQNF----NDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        74 ~~~~IevIP~i~~~GH~~~~L~-~p~~~~l~e~~----~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      ++|||+||||||+|||+.++++ +|++..-....    ...+++||++|+|++|+++|++|+
T Consensus        81 ~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~E~  142 (362)
T d2gjxa1          81 RLRGIRVLAEFDTPGHTLSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEFMSTFFLEV  142 (362)
T ss_dssp             HHTTCEEEEECCCSSSCTTTTTTSTTCEEEEESSSSEEEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCEEEecccccchhHHHHHhChhhcCcccCCCCCCCcccccCCCcHHHHHHHHHHHHHH
Confidence            9999999999999999999997 66654322211    113579999999999999999997

>d1yhta1 c.1.8.6 (A:16-359) Dispersin B, DspB {Actinobacillus actinomycetemcomitans [TaxId: 714]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: Dispersin B, DspB
species: Actinobacillus actinomycetemcomitans [TaxId: 714]

Probab=100.00  E-value=1.4e-34  Score=231.41  Aligned_cols=123  Identities=15%  Similarity=0.171  Sum_probs=103.6

Q ss_pred             CceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeecc--CCCCCC--------------------CCCCCCCCHHH
Q psy2348           8 KEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDT--LPYSLG--------------------FDNTNPFRETE   65 (131)
Q Consensus         8 ~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~--~p~~~~--------------------~~~~~~YT~ee   65 (131)
                      ++||+|||++|+++++++||++||.||.+|+|.+++|+.|.  ||+...                    ..++++||++|
T Consensus         2 k~rG~mlD~aR~~~~~~~ik~~id~ma~~K~N~lhlHltDdq~~~le~~~~p~l~~~~~~~~~~~~~~~~~~~~~yt~~e   81 (344)
T d1yhta1           2 KQTGLMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKDGIYINPYTGKPFLSYRQ   81 (344)
T ss_dssp             CEEEEEEECSSSCCCHHHHHHHHHHHHHTTCCEEEEECBSSSCBCBCBTTTTBCGGGSEECTTSCEECTTTCCEEBCHHH
T ss_pred             CcccEEEECCCCCcCHHHHHHHHHHHHHcCCcEEEEEeecCCCceecccCCchhhhhccccCCCCCCCCCCCCcccCHHH
Confidence            58999999999999999999999999999999999999876  333211                    12345799999


Q ss_pred             HHHHHHHHHHcCCeEeeccCCcchHHHHhc-ccccccc-----cccCCCCceecCCChhHHHHHHHHHhhh
Q psy2348          66 IFIILAAAESNGLASIPLVPLYSDMDFVLK-VKEFAKM-----RQNFNDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        66 ikeiv~yA~~~~IevIP~i~~~GH~~~~L~-~p~~~~l-----~e~~~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      +|+|++||++|||+||||||+|||+.++++ +|+....     ......+++|||++|+|++|+++|++|+
T Consensus        82 ~~~lv~yA~~rgI~viPeiD~PGH~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~  152 (344)
T d1yhta1          82 LDDIKAYAKAKGIELIPELDSPNHMTAIFKLVQKDRGVKYLQGLKSRQVDDEIDITNADSITFMQSLMSEV  152 (344)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEESSSCHHHHHHHHHHHCHHHHHHHBCSSCTTSBCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCEEEeccchhhHHHHHHHhchhhcCCCCccCCCCCCCCCcccCCCchhHHHHHHHHHHH
Confidence            999999999999999999999999999998 4544322     1223345799999999999999999997

>d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-mannanase
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=97.26  E-value=0.00046  Score=51.07  Aligned_cols=66  Identities=6%  Similarity=-0.083  Sum_probs=46.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCC---HHHHHHHHHHHHHcCCeEeecc
Q psy2348          19 APPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFR---ETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        19 ~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT---~eeikeiv~yA~~~~IevIP~i   84 (131)
                      ..++.+.+++.++.|+.+|+|.+++..-....+....+..|.|.   -++++++++.|+++||.||..+
T Consensus        34 ~~~~~~~~~~~l~~~k~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vi~~l  102 (370)
T d1rh9a1          34 DPSTRIKVTNTFQQASKYKMNVARTWAFSHGGSRPLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSL  102 (370)
T ss_dssp             STTTTHHHHHHHHHHHHTTCCEEEEESSCSSSSSCSEEETTEECHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHCCCeEEEECCccCccCcccCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEec
Confidence            35677889999999999999999985311111111112234454   4556788999999999999876

>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: A4 beta-galactosidase
species: Thermus thermophilus [TaxId: 274]

Probab=96.79  E-value=0.0026  Score=46.01  Aligned_cols=103  Identities=15%  Similarity=0.165  Sum_probs=70.4

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE---eeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhc-cc
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE---WEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLK-VK   97 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~---~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~-~p   97 (131)
                      ..+..++=|++|+.+|+|.+++.   |....|=      .|.|.-+.+.++++-|+++||++|-.+.-..+=+++.. +|
T Consensus        12 ~~~~~~~D~~~~~~~G~n~vR~~i~~W~~iep~------~G~~~~~~~d~~i~~~~~~Gi~~iv~l~~~~~P~w~~~~~~   85 (393)
T d1kwga2          12 PKERWKEDARRMREAGLSHVRIGEFAWALLEPE------PGRLEWGWLDEAIATLAAEGLKVVLGTPTATPPKWLVDRYP   85 (393)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEECTTCHHHHCSB------TTBCCCHHHHHHHHHHHTTTCEEEEECSTTSCCHHHHHHCG
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecccchhhcCCC------CCccCHHHHHHHHHHHHHCCCEEEEEcCCCCCchhhhccCc
Confidence            45677888999999999999864   4454442      35666789999999999999999877654444445543 45


Q ss_pred             cccccccc-----CCCCceecCCChhHHHHHHHHHhhh
Q psy2348          98 EFAKMRQN-----FNDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        98 ~~~~l~e~-----~~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      .+......     .......|..+|...+.+...++.+
T Consensus        86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (393)
T d1kwga2          86 EILPVDREGRRRRFGGRRHYCFSSPVYREEARRIVTLL  123 (393)
T ss_dssp             GGSCBCTTSCBCCSSSSCCCCTTCHHHHHHHHHHHHHH
T ss_pred             ccccccCCCcccccccccccCCCCHHHHHHHHHHHHHH
Confidence            44321111     1123457788888888877776654

>d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-mannanase
species: Bacillus sp. JAMB-602 [TaxId: 244966]

Probab=96.74  E-value=0.0028  Score=46.23  Aligned_cols=71  Identities=18%  Similarity=0.122  Sum_probs=52.1

Q ss_pred             CCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348           6 TFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus         6 ~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      .|.-|||-.   ++....+...+.++.|+.+|+|.+++.+....+|..     +  -.+.++++++.|.++||-||-.+-
T Consensus        17 ~~~l~Gvn~---~~~~~~~~~~~d~~~~~~~G~N~VRl~~~~~~~~~~-----~--~~~~ld~~v~~a~~~Gi~vildlh   86 (297)
T d1wkya2          17 PFVMRGINH---GHAWYKDQATTAIEGIANTGANTVRIVLSDGGQWTK-----D--DIQTVRNLISLAEDNNLVAVLEVH   86 (297)
T ss_dssp             BCCCEEEEE---CGGGCGGGHHHHHHHHHTTTCSEEEEEECCSSSSCC-----C--CHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEEEecc---CcccCchHHHHHHHHHHHCCCcEEEEeccCCCccCc-----c--HHHHHHHHHHHHHHCCCceEeecc
Confidence            355677765   233345667889999999999999998754333321     1  258899999999999999998764


Q ss_pred             C
Q psy2348          86 L   86 (131)
Q Consensus        86 ~   86 (131)
                      .
T Consensus        87 ~   87 (297)
T d1wkya2          87 D   87 (297)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.63  E-value=0.0048  Score=47.12  Aligned_cols=106  Identities=17%  Similarity=0.003  Sum_probs=67.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEE--ee-ccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIE--WE-DTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~--~e-d~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~   91 (131)
                      =+...|.+-||.|+.+|+|+++|-  ++ ....+.|+      -.++.+=|.+|+|++|+-|.++||.||=.+- +.|+.
T Consensus        31 Gd~~g~~~~ldyl~~LGv~~i~L~Pv~~~~~~~~~GY~~~d~~~vdp~~G~~~d~~~lv~~aH~~gi~VilD~V-~NH~~  109 (420)
T d2bhua3          31 GTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLMALVDAAHRLGLGVFLDVV-YNHFG  109 (420)
T ss_dssp             CSHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEEC-CSCCC
T ss_pred             CCHHHHHHhHHHHHHcCCCEEEeCCCCcCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHhcccccccccc-ccccC
Confidence            367888888999999999999872  11 01112232      1123344899999999999999999997763 35543


Q ss_pred             HH---h-cc-c-ccccccccCCCCceecCCChhHHHHHHHHHh
Q psy2348          92 FV---L-KV-K-EFAKMRQNFNDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        92 ~~---L-~~-p-~~~~l~e~~~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      .-   + .+ | .|.. .........|+-.||++.+.+.+++.
T Consensus       110 ~~~~~~~~~~~~~~~~-~~~~~~~~dlN~~np~v~~~~~~~~~  151 (420)
T d2bhua3         110 PSGNYLSSYAPSYFTD-RFSSAWGMGLDYAEPHMRRYVTGNAR  151 (420)
T ss_dssp             SSSCCHHHHCGGGEEE-EEECSSSEEECTTSHHHHHHHHHHHH
T ss_pred             CCCccccccccccccc-cccccccccccccChHHHHHHHHHhh
Confidence            21   1 11 1 1111 11122335789999999998888764

>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Exomannosidase
species: Cellvibrio mixtus [TaxId: 39650]

Probab=96.57  E-value=0.0074  Score=44.47  Aligned_cols=69  Identities=12%  Similarity=0.032  Sum_probs=50.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCEEEEEee--ccC----CCCCCCCCCCCCCHH---HHHHHHHHHHHcCCeEeeccC
Q psy2348          17 KGAPPSLTYLKEILPILAYTGATSLLIEWE--DTL----PYSLGFDNTNPFRET---EIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        17 ~~~~~~~~~lk~~i~~la~~g~n~~~l~~e--d~~----p~~~~~~~~~~YT~e---eikeiv~yA~~~~IevIP~i~   85 (131)
                      .+...+.+.+.+.++.|+.+|+|.+++..-  ...    .+...-+..|.|.++   .+.++++.|+++||.||..+-
T Consensus        34 ~~~~~~~~~~~~~l~~~k~~G~N~iR~~~~~~~~~~~~~~~~~~~~~~g~~de~gl~~~d~~l~~a~~~Gi~vi~~l~  111 (410)
T d1uuqa_          34 PNEVGDRDRLAKELDNLKAIGVNNLRVLAVSEKSEINSAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVLYFN  111 (410)
T ss_dssp             SSTTCCHHHHHHHHHHHHHTTCCEEEEECCCBCCCSTTSCSSCSBSSTTCBCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             cCCCCCHHHHHHHHHHHHHCCCcEEEeCCcccccccccccCCCcccccccccHHHHHHHHHHHHHHHHcCCeeEEecc
Confidence            356778899999999999999999998542  111    111113345677654   567899999999999998774

>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=96.56  E-value=0.0037  Score=47.10  Aligned_cols=104  Identities=13%  Similarity=0.071  Sum_probs=65.9

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeeccC--CC---CCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIEWEDTL--PY---SLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~--p~---~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      +...|++-||.|+.+|+|+++|-  .-+  |.   .|+      ..+..+=|.+|+|++++.|.++||.||=.+ .+.|+
T Consensus        27 d~~gi~~~ldyi~~LGv~~i~l~--Pv~~~~~~~~~GY~~~d~~~vd~~~Gt~~dlk~lv~~~h~~gi~VilD~-V~NH~  103 (400)
T d1eh9a3          27 TFEGVIRKLDYLKDLGITAIEIM--PIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDV-VYNHV  103 (400)
T ss_dssp             SHHHHHHTHHHHHHHTCCEEEEC--CCBCCSSSCCCSTTCCCTTCBCSTTCCHHHHHHHHHHHHHTTCEEEEEE-CCSCC
T ss_pred             CHHHHHHHhHHHHHcCCCEEEeC--CcCcCCCCCCCCCCCCCCCCcCcccCCHHHHHHHHHHHHhcCCceeeec-ccccc
Confidence            68889999999999999998882  111  21   122      112334489999999999999999998766 35675


Q ss_pred             HH----Hhccccccccc-cc--CCCCceecCCChhHHHHHHHHHh
Q psy2348          91 DF----VLKVKEFAKMR-QN--FNDTRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        91 ~~----~L~~p~~~~l~-e~--~~~~~~lcp~~~~t~~f~~~ll~  128 (131)
                      ..    ..+++.|..-. ..  ....+..+-.+|++.+++.+++.
T Consensus       104 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~v~~~l~d~~~  148 (400)
T d1eh9a3         104 GPEGNYMVKLGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVE  148 (400)
T ss_dssp             CSSSCCHHHHSCCSCSSCCCSSSCCCCSSSTTHHHHHHHHHHHHH
T ss_pred             cCCCcchhhhccccccccccccccccccccccccHHHHHHHHHHH
Confidence            42    11222221111 11  11224455567888888877664

>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 1,4-alpha-glucan branching enzyme, central domain
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.0024  Score=47.11  Aligned_cols=106  Identities=13%  Similarity=-0.066  Sum_probs=60.8

Q ss_pred             CCHHHHH-HHHHHHHHcCCCEEEEE--eec-cCCCCCC-C-----CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          21 PSLTYLK-EILPILAYTGATSLLIE--WED-TLPYSLG-F-----DNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        21 ~~~~~lk-~~i~~la~~g~n~~~l~--~ed-~~p~~~~-~-----~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      -+...|. ++||.|+.+|+|+++|-  ++. ...+-|+ .     .++.+=|.+|+|++|+-|.++||.||=-+- +.|+
T Consensus        37 g~~~gi~~klidyl~~LGv~~iwl~Pi~~~~~~~~hGY~~~d~~~vdp~~Gt~~d~~~LV~~aH~~gi~VilD~V-~NH~  115 (396)
T d1m7xa3          37 LSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWV-PGHF  115 (396)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEEEC-TTSC
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcCcCcCCCcCcccCCHHHHHHHHHHHhhhhhhhhhccc-cccc
Confidence            3445544 56799999999998871  111 0112233 1     133355899999999999999999886542 3454


Q ss_pred             HHHhcc----cccc--ccccc------CCCCceecCCChhHHHHHHHHH
Q psy2348          91 DFVLKV----KEFA--KMRQN------FNDTRFICPNARSSLDLVFKMI  127 (131)
Q Consensus        91 ~~~L~~----p~~~--~l~e~------~~~~~~lcp~~~~t~~f~~~ll  127 (131)
                      ..--.+    +.+.  ...+.      ......++..+|++...+.+.+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (396)
T d1m7xa3         116 PTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNA  164 (396)
T ss_dssp             CCSTTSSTTGGGSCSSBCC-----------CCCBCTTSHHHHHHHHHHH
T ss_pred             CCcccccccccCCccccccCCCCCCCCCCCCccccCCCchhHHHHHHHH
Confidence            432211    1110  00000      0112357788888888877754

>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus sp., ksm-k38 [TaxId: 1409]

Probab=96.38  E-value=0.0041  Score=45.60  Aligned_cols=67  Identities=12%  Similarity=0.061  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeeccCCCC-----CCCC-------------C-CCCC-CHHHHHHHHHHHHHcCCeEe
Q psy2348          22 SLTYLKEILPILAYTGATSLLIEWEDTLPYS-----LGFD-------------N-TNPF-RETEIFIILAAAESNGLASI   81 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~-----~~~~-------------~-~~~Y-T~eeikeiv~yA~~~~IevI   81 (131)
                      +-+.|.+-||.|+++|+|+|+|-  .-+++.     |+..             . ...| |.+|.|++|+-|.++||.||
T Consensus        21 ~~~~i~~kLdyLk~LGvt~I~l~--Pi~~~~~~~~~gY~~~d~~~~~~~~~~~~vd~~~Gt~~efk~lV~~~H~~GI~Vi   98 (390)
T d1ud2a2          21 HWNRLHDDAAALSDAGITAIWIP--PAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSNDINVY   98 (390)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEC--CCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeC--CCccCCCCCCCCCCccCCcccccccccCCcCCCCCCHHHHHHHHHHHHhcCCceE
Confidence            46778888999999999998761  111111     1100             0 0023 89999999999999999999


Q ss_pred             eccCCcchHH
Q psy2348          82 PLVPLYSDMD   91 (131)
Q Consensus        82 P~i~~~GH~~   91 (131)
                      --+ ++.|+.
T Consensus        99 lDv-V~NHt~  107 (390)
T d1ud2a2          99 GDV-VMNHKM  107 (390)
T ss_dssp             EEE-CCSEEC
T ss_pred             EEE-cccccc
Confidence            887 456765

>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase)
species: Pseudomonas stutzeri [TaxId: 316]

Probab=96.31  E-value=0.0083  Score=44.37  Aligned_cols=70  Identities=14%  Similarity=0.099  Sum_probs=49.6

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccC---------CCCCC-----CCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTL---------PYSLG-----FDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~---------p~~~~-----~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      .-+.|++-+|.|+.+|+|.++|-  ++...         .|.|+     -.+..+=|.+|.|++|+.|.++||.||--+ 
T Consensus        35 ~~~~i~~kl~yl~~lGv~aIwl~P~~~~~~~~~~~~~~~~~hgY~~~dy~vd~~~Gt~~df~~LV~~aH~~GI~VIlD~-  113 (357)
T d1gcya2          35 WYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDV-  113 (357)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTCSSSCSCSSSCCHHHHHHHHHHHHHTTCEEEEEE-
T ss_pred             HHHHHHHHHHHHHHcCCCEEEeCcCeeCCccCCCCCCCCCCCCcChhhcccCccCCCHHHHHHHHHHHHhcCCeEEEEE-
Confidence            35779999999999999999872  11000         01121     112234488999999999999999999887 


Q ss_pred             CcchHHH
Q psy2348          86 LYSDMDF   92 (131)
Q Consensus        86 ~~GH~~~   92 (131)
                      ++.|+..
T Consensus       114 V~NH~~~  120 (357)
T d1gcya2         114 VPNHMNR  120 (357)
T ss_dssp             CCSBCCT
T ss_pred             eccccCC
Confidence            6777754

>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Isoamylase, central domain
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=96.22  E-value=0.0035  Score=48.43  Aligned_cols=70  Identities=16%  Similarity=0.065  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eec-------------cCCCCCC-CC----CCCCC--------CHHHHHHHHHHH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WED-------------TLPYSLG-FD----NTNPF--------RETEIFIILAAA   73 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed-------------~~p~~~~-~~----~~~~Y--------T~eeikeiv~yA   73 (131)
                      +..-|.+-+|.|+.+|+|.|+|-  ++.             ..+|.|+ ..    -...|        |.+|.|++|+-|
T Consensus        41 d~~Gi~~kLdyl~~LGvnaiwl~Pi~~~~~~~~~~~~~~~~~~~y~GY~~~d~~~vdp~y~~~~~~~Gt~~d~~~LV~~a  120 (475)
T d1bf2a3          41 TYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAF  120 (475)
T ss_dssp             SHHHHHHTHHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCBSCSSCBCGGGCSCCSTTHHHHHHHHHHHHH
T ss_pred             CHHHHHhhhHHHHHcCCCEEEeCCCCcCCCcccccccccccCcCCCCCCcccCCCcCcccccCCCCCCCHHHHHHHHHHH
Confidence            67778888999999999998872  110             0112333 11    01123        889999999999


Q ss_pred             HHcCCeEeeccCCcchHHH
Q psy2348          74 ESNGLASIPLVPLYSDMDF   92 (131)
Q Consensus        74 ~~~~IevIP~i~~~GH~~~   92 (131)
                      .++||.||=.+ ++.|+..
T Consensus       121 H~~GIrVilD~-V~NH~~~  138 (475)
T d1bf2a3         121 HNAGIKVYMDV-VYNHTAE  138 (475)
T ss_dssp             HHTTCEEEEEE-CCSSCTT
T ss_pred             HhcCcEEEEEe-ccccccC
Confidence            99999999555 5677764

>d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: endo-1,4-beta-mannosidase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=96.16  E-value=0.0061  Score=43.82  Aligned_cols=63  Identities=11%  Similarity=0.010  Sum_probs=44.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeeccC---CCCCCCC---CCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          22 SLTYLKEILPILAYTGATSLLIEWEDTL---PYSLGFD---NTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~---p~~~~~~---~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      ..+..++.++.|+.+|+|.+++..-...   |......   .-+.-..+++.++++.|+++||.||..+
T Consensus        40 ~~~~~~~~l~~~~~~G~N~vRv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~~gi~vi~d~  108 (350)
T d2c0ha1          40 GKSTFESTLSDMQSHGGNSVRVWLHIEGESTPEFDNNGYVTGIDNTLISDMRAYLHAAQRHNILIFFTL  108 (350)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSCEEECCTTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECcccCccCCcccccCCCCCccChhhhHHHHHHHHHHHHCCCEEEEEe
Confidence            4677899999999999999997432111   1111100   0122346899999999999999999876

>d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus niger, acid amylase [TaxId: 5061]

Probab=96.07  E-value=0.0073  Score=45.94  Aligned_cols=69  Identities=20%  Similarity=0.088  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--ee----c---cCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WE----D---TLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPL   86 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~e----d---~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~   86 (131)
                      +...|.+-||.|+.+|+|+++|-  ++    +   ..+|.|+      ..+...=|.+|+|++|+.|.++||.||=.+ .
T Consensus        41 ~~~g~~~kLdyL~~LGv~~I~L~Pi~~~~~~~~~~~~~~~gY~~~d~~~id~~~Gt~~~~k~lv~~aH~~Gi~VilD~-V  119 (381)
T d2aaaa2          41 SWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDV-V  119 (381)
T ss_dssp             CHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEE-C
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCccCCccCCCCCCCCcccccccccccccccCCHHHHHHHHHHHhhhhhcccccc-c
Confidence            47888888999999999998752  12    1   1122232      112334489999999999999999999666 4


Q ss_pred             cchHH
Q psy2348          87 YSDMD   91 (131)
Q Consensus        87 ~GH~~   91 (131)
                      +-|+.
T Consensus       120 ~NH~~  124 (381)
T d2aaaa2         120 PDHMG  124 (381)
T ss_dssp             CSBCC
T ss_pred             ccccc
Confidence            55653

>d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 4-alpha-glucanotransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.04  E-value=0.0063  Score=45.71  Aligned_cols=68  Identities=13%  Similarity=0.122  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~   91 (131)
                      +...|.+-||.|+.+|+|+++|-  ++. ..+.|+      -.++.+=|.+|+|++++.|.++||.||-.+- +.|+.
T Consensus        21 d~~gi~~kLdyl~~LGv~~I~l~Pi~~~-~~~~GY~~~d~~~vd~~~Gt~~d~~~lv~~~h~~gi~VilD~V-~NH~~   96 (391)
T d1lwha2          21 DFRGLKNAVSYLKELGIDFVWLMPVFSS-ISFHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIKVVLDLP-IHHTG   96 (391)
T ss_dssp             CHHHHHHTHHHHHHTTCSEEEECCCEEC-SSSSCCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEEC-TTBCC
T ss_pred             CHHHHHHhhHHHHHcCCCEEEECCCCCC-CCCCCCCccCCCCcCcccCCHHHHHHHHHHHHhcCCEEeeccc-ccccc
Confidence            68888888999999999998761  111 112333      1134456899999999999999999998874 35554

>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Neopullulanase, central domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.00  E-value=0.0088  Score=44.82  Aligned_cols=69  Identities=9%  Similarity=0.050  Sum_probs=49.0

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE-eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE-WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~-~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~   91 (131)
                      +...|.+-||.|+.+|+|+++|- +-..-.+.|+      ..+..+=|.+|.|++|+-|.++||.||=.+ .+.|+.
T Consensus        51 ~~~gi~~kldyl~~LGv~~i~L~Pi~~~~~~~gy~~~d~~~vd~~~Gt~~~~~~lv~~aH~~Gi~VilD~-V~NH~~  126 (382)
T d1j0ha3          51 DLQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDA-VFNHCG  126 (382)
T ss_dssp             CHHHHHHTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEE-CCSBCC
T ss_pred             CHHHHHHhHHHHHHcCCCEEEeCCCCcCCcccCCCcccccccCCCCCCHHHHHHHHHHhhhccceEEEEe-eecccc
Confidence            47778888899999999998762 1111112232      123446699999999999999999998776 445554

>d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus sp. 707 [TaxId: 1416]

Probab=95.99  E-value=0.01  Score=44.79  Aligned_cols=68  Identities=16%  Similarity=0.196  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEE--eec-cC---CCCCC----C--------CCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          23 LTYLKEILPILAYTGATSLLIE--WED-TL---PYSLG----F--------DNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~--~ed-~~---p~~~~----~--------~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      -..|.+-||.|+.+|+|+|+|-  ++. +.   .|.+.    +        ....+=|.+|.|++|+-|.++||.||--+
T Consensus        20 ~~~i~~kLdyL~~LGv~aIwL~Pi~~~~~~~~~gY~~~~~yd~~~~~~~~~vd~~~Gt~~df~~Lv~~aH~~GIkVilDv   99 (394)
T d2d3na2          20 WNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDV   99 (394)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSBTTBCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEECcCccCCCCCCCCCCcccCcccccccccCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence            3689999999999999998862  111 10   11110    0        11112289999999999999999998766


Q ss_pred             CCcchHH
Q psy2348          85 PLYSDMD   91 (131)
Q Consensus        85 ~~~GH~~   91 (131)
                       ++.|+.
T Consensus       100 -V~NH~~  105 (394)
T d2d3na2         100 -VMNHKG  105 (394)
T ss_dssp             -CCSEEC
T ss_pred             -eccccc
Confidence             456654

>d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Plant alpha-amylase
species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]

Probab=95.90  E-value=0.0059  Score=44.59  Aligned_cols=79  Identities=10%  Similarity=0.008  Sum_probs=54.1

Q ss_pred             eEEeec-CCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCC---CC-CC-----CC-CCCCHHHHHHHHHHHHHcCCe
Q psy2348          11 LVHLDL-KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS---LG-FD-----NT-NPFRETEIFIILAAAESNGLA   79 (131)
Q Consensus        11 g~mlD~-~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~---~~-~~-----~~-~~YT~eeikeiv~yA~~~~Ie   79 (131)
                      +|..|. +.+.=.-..|.+-||.|+.+|+|+++|  -.-++..   |+ ..     +. .+=|.+|.|++|+-|.++||.
T Consensus         7 ~f~~~~~~~~~g~~~~i~~kLdyl~~lGv~~i~L--~Pi~~~~~~~gY~~~d~~~id~~~~G~~~~f~~lv~~~H~~gi~   84 (347)
T d1ht6a2           7 GFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWL--PPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQ   84 (347)
T ss_dssp             CCCTTGGGCTTCHHHHHHTTHHHHHHTTCCEEEE--CCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCE
T ss_pred             ccccCcCCCCCCCHHHHHHhHHHHHHcCCCEEEE--CCCCcCCCCCCCCccCcCcCCcccCCCHHHHHHHHHHHhhcceE
Confidence            344444 334445678888899999999999877  2222222   22 00     11 133679999999999999999


Q ss_pred             EeeccCCcchHHH
Q psy2348          80 SIPLVPLYSDMDF   92 (131)
Q Consensus        80 vIP~i~~~GH~~~   92 (131)
                      ||-.+ .+.|+..
T Consensus        85 VilD~-V~NH~~~   96 (347)
T d1ht6a2          85 AIADI-VINHRCA   96 (347)
T ss_dssp             EEEEE-CCSBCCC
T ss_pred             Eeeec-cccccCC
Confidence            99988 6777753

>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-1,4-galactanase
species: Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]

Probab=95.80  E-value=0.013  Score=43.03  Aligned_cols=51  Identities=18%  Similarity=0.117  Sum_probs=42.1

Q ss_pred             HHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        27 k~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      +.+++.|+..|+|.+++..- +-|..      |.++.+++++++++|+++|+.||..+
T Consensus        30 ~~~~~~lk~~G~n~VRi~vW-~~p~~------g~~~~~~~~~~v~~a~~~gl~vil~~   80 (332)
T d1hjsa_          30 QPLENILAANGVNTVRQRVW-VNPAD------GNYNLDYNIAIAKRAKAAGLGVYIDF   80 (332)
T ss_dssp             CCHHHHHHHTTCCEEEEEEC-SSCTT------CTTSHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccHHHHHHHcCCCEEEeeee-ecCCC------CccCHHHHHHHHHHHHHCCCEEEEEe
Confidence            45788999999999998631 22333      57899999999999999999999887

>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-mannanase
species: Trichoderma reesei [TaxId: 51453]

Probab=95.78  E-value=0.0062  Score=44.68  Aligned_cols=78  Identities=9%  Similarity=-0.081  Sum_probs=52.4

Q ss_pred             CCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeec---cCCCCCC-----C-CCC-----CCCCHHHHHHHHHH
Q psy2348           7 FKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWED---TLPYSLG-----F-DNT-----NPFRETEIFIILAA   72 (131)
Q Consensus         7 f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed---~~p~~~~-----~-~~~-----~~YT~eeikeiv~y   72 (131)
                      |-.+|+=..-.+..++.+.+++.++.|+.+|+|.+++..-.   .-+..+.     . ...     +.-..+.+..+++.
T Consensus        19 ~~~~G~N~~~~~~~~~~~~~~~~l~~~~~~G~N~iR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~   98 (344)
T d1qnra_          19 GYFAGTNCYWCSFLTNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQIWFQKLSATGSTINTGADGLQTLDYVVQS   98 (344)
T ss_dssp             SCEEEEECGGGGGCCCHHHHHHHHHHHHHTTCCEEECCCCCEESSCCSTTCCCSEECCTTCCEECCSTTTTHHHHHHHHH
T ss_pred             EEEEEEccCCCCcCCCHHHHHHHHHHHHhcCCCEEEECCcccccccCCCCccchhhcccccCccccCHHHHHHHHHHHHH
Confidence            44566644334567788999999999999999999985311   1111111     0 011     12234669999999


Q ss_pred             HHHcCCeEeecc
Q psy2348          73 AESNGLASIPLV   84 (131)
Q Consensus        73 A~~~~IevIP~i   84 (131)
                      |+++||.||..+
T Consensus        99 a~~~Gi~vi~~l  110 (344)
T d1qnra_          99 AEQHNLKLIIPF  110 (344)
T ss_dssp             HHHHTCEEEEES
T ss_pred             HHHcCCeeEeec
Confidence            999999999876

>d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]

Probab=95.56  E-value=0.018  Score=42.80  Aligned_cols=66  Identities=8%  Similarity=0.023  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeeccCC---CCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIEWEDTLP---YSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p---~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      +...|.+-||.|+.+|+|+++|-  .-++   +.|+      ..+..+=|.+|.|++|+-|.++||.||=.+- +.|+
T Consensus        49 d~~gi~~kLdylk~LGv~~i~l~--Pi~~~~~~~gY~~~~~~~id~~~Gt~~df~~lv~~~h~~gi~VilD~V-~NH~  123 (382)
T d1ea9c3          49 DLQGVIDHLDHLSKLGVNAVYFT--PLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAV-FNHS  123 (382)
T ss_dssp             CHHHHHHTHHHHHHHTCSEEEEC--CCSSCSSSSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECC-CSBC
T ss_pred             CHHHHHHhhHHHHhCCCCEEEeC--CCccCCCCCCCCcccccccccccCCHHHHHHHHHHHHhhcceEEEeee-cccc
Confidence            57888888999999999998761  1111   1222      1122234899999999999999999997763 4443

>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]

Probab=95.55  E-value=0.015  Score=44.00  Aligned_cols=69  Identities=16%  Similarity=0.062  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eec-------cCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WED-------TLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPL   86 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed-------~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~   86 (131)
                      +...|.+-||.|+++|+|+++|-  ++.       ..++.|+      ..+..+=|.+|.|++|+-|.++||.||=.+ .
T Consensus        41 d~~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~~gY~~~d~~~vd~~~Gt~~dfk~lv~~~H~~Gi~VilD~-V  119 (381)
T d2guya2          41 TWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDV-V  119 (381)
T ss_dssp             CHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTTSCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEE-C
T ss_pred             CHHHHHHhHHHHHHCCCCEEEeCCCCCCCcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHhhccceeeec-c
Confidence            68888888999999999998862  110       0122233      112334489999999999999999999776 4


Q ss_pred             cchHH
Q psy2348          87 YSDMD   91 (131)
Q Consensus        87 ~GH~~   91 (131)
                      +-|++
T Consensus       120 ~NH~s  124 (381)
T d2guya2         120 ANHMG  124 (381)
T ss_dssp             CSBCC
T ss_pred             ccccc
Confidence            55654

>d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase CelA
species: Clostridium cellulolyticum [TaxId: 1521]

Probab=95.51  E-value=0.0089  Score=45.61  Aligned_cols=53  Identities=9%  Similarity=0.144  Sum_probs=38.3

Q ss_pred             HHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCC-----HHHHHHHHHHHHHcCCeEeecc
Q psy2348          27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFR-----ETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        27 k~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT-----~eeikeiv~yA~~~~IevIP~i   84 (131)
                      +++|+.|+..|+|.++|-+.    |..++. +..|+     .+.++++|++|.++||.||=.+
T Consensus        64 ~~~i~~ik~~Gfn~vRiPv~----w~~~~~-~~~~~i~~~~l~~v~~vV~~a~~~Gl~VIldl  121 (380)
T d1edga_          64 KQMIDAIKQKGFNTVRIPVS----WHPHVS-GSDYKISDVWMNRVQEVVNYCIDNKMYVILNT  121 (380)
T ss_dssp             HHHHHHHHHHTCCEEEECCC----CGGGEE-TTTTEECHHHHHHHHHHHHHHHTTTCEEEEEC
T ss_pred             HHHHHHHHHcCCCEEEEccc----HHHhcC-CCCCccCHHHHHHHHHHHHHHHHcCCEEEEec
Confidence            78999999999999999432    222111 11233     3569999999999999999433

>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase homologue TM1752
species: Thermotoga maritima [TaxId: 2336]

Probab=95.51  E-value=0.019  Score=41.87  Aligned_cols=74  Identities=9%  Similarity=-0.145  Sum_probs=44.7

Q ss_pred             CceeEEe-ecCCCCCCHHHHHHHHHHHHHcCCCEEEEEee--ccCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348           8 KEVLVHL-DLKGAPPSLTYLKEILPILAYTGATSLLIEWE--DTLPYSLG-FDNTNPFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus         8 ~~Rg~ml-D~~~~~~~~~~lk~~i~~la~~g~n~~~l~~e--d~~p~~~~-~~~~~~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      .|||+=+ +.-.+...-.+.++-++.|+.+|+|.++|-+.  .--|..+. ..+..  ..+-++++++.|+++||.||-.
T Consensus         3 ~~~G~n~~~~~~~~~~~~~~e~d~~~l~~~G~n~vRlpv~~~~~~~~~~~~~~~~~--~l~~ld~~v~~~~~~gi~vild   80 (325)
T d1vjza_           3 RWRGFNLLEAFSIKSTGNFKEEDFLWMAQWDFNFVRIPMCHLLWSDRGNPFIIRED--FFEKIDRVIFWGEKYGIHICIS   80 (325)
T ss_dssp             CCEEEECCTTSSTTCCCCCCHHHHHHHHHTTCCEEEEEEEGGGTSCSSCTTCCCGG--GHHHHHHHHHHHHHHTCEEEEE
T ss_pred             cccceehhhhhhhcccCCCCHHHHHHHHHcCCCEEEecccHHHccCCCCCCccCHH--HHHHHHHHHHHHHHcCCcEEEe
Confidence            3566532 22122233344567788999999999998543  21221111 00111  2466999999999999999953

>d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Thermoanaerobacterium [TaxId: 28895]

Probab=95.42  E-value=0.015  Score=43.98  Aligned_cols=69  Identities=14%  Similarity=0.049  Sum_probs=47.2

Q ss_pred             CHHHHHHHHH--HHHHcCCCEEEE--Eeec------------cCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCe
Q psy2348          22 SLTYLKEILP--ILAYTGATSLLI--EWED------------TLPYSLG------FDNTNPFRETEIFIILAAAESNGLA   79 (131)
Q Consensus        22 ~~~~lk~~i~--~la~~g~n~~~l--~~ed------------~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~Ie   79 (131)
                      +..-|.+-||  .|+.+|+|+++|  =++.            ...|.|+      ..++.+=|.+|+|++|+-|.++||.
T Consensus        53 dl~Gi~~kLd~~YLk~LGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~~gY~~~d~~~vdp~~Gt~~dfk~LV~~aH~~Gi~  132 (406)
T d3bmva4          53 DWQGIINKINDGYLTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAHNIK  132 (406)
T ss_dssp             CHHHHHHHHHTSTTGGGTCCEEEECCCEEECCCCEEETTTEEECSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCE
T ss_pred             CHHHHHHhcCHHHHHHcCCCEEEECCcccccccccCCCCCCCChhhcCcccccccccCcccccHHHHHHHHHHHHhcccc
Confidence            5666777788  789999999987  1221            0112233      1123345899999999999999999


Q ss_pred             EeeccCCcchHH
Q psy2348          80 SIPLVPLYSDMD   91 (131)
Q Consensus        80 vIP~i~~~GH~~   91 (131)
                      ||=-+ ++.|+.
T Consensus       133 VilD~-V~NH~~  143 (406)
T d3bmva4         133 VIIDF-APNHTS  143 (406)
T ss_dssp             EEEEE-CTTEEE
T ss_pred             ceeee-eccccc
Confidence            98665 345653

>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.42  E-value=0.03  Score=42.18  Aligned_cols=68  Identities=16%  Similarity=0.204  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEE--eec--c--CCCCCC-C-----------CCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          23 LTYLKEILPILAYTGATSLLIE--WED--T--LPYSLG-F-----------DNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~--~ed--~--~p~~~~-~-----------~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      -+.|++-||.|+.+|+|+|+|-  ++.  .  ..|.+. .           .+..+=|.+|+|++|+.|.++||.||=-+
T Consensus        23 ~~~i~~kLdyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd~~~Gt~~df~~LV~~aH~~GIkVIlDv  102 (393)
T d1hvxa2          23 WTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADV  102 (393)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCccCccccccccccCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence            4678999999999999998762  110  0  001110 0           11223378999999999999999999776


Q ss_pred             CCcchHH
Q psy2348          85 PLYSDMD   91 (131)
Q Consensus        85 ~~~GH~~   91 (131)
                       ++-|+.
T Consensus       103 -V~NHt~  108 (393)
T d1hvxa2         103 -VFDHKG  108 (393)
T ss_dssp             -CCSEEC
T ss_pred             -eccccc
Confidence             466663

>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-1,4-galactanase
species: Bacillus licheniformis [TaxId: 1402]

Probab=95.21  E-value=0.019  Score=44.13  Aligned_cols=58  Identities=14%  Similarity=0.046  Sum_probs=43.8

Q ss_pred             HHHHHHHHHcCCCEEEEEee-ccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          27 KEILPILAYTGATSLLIEWE-DTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        27 k~~i~~la~~g~n~~~l~~e-d~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      +.+++.|+..|+|.++|-+- +.....+.-...|.+..+.+++++++|+++|+.|+..+
T Consensus        41 ~d~~~~lk~~G~n~VRl~vw~~~~~~~~~~~~~g~~~l~~~~~~~~~a~~~Gl~v~ldl   99 (387)
T d1ur4a_          41 QDIFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEKAIQIGKRATANGMKLLADF   99 (387)
T ss_dssp             CCHHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccHHHHHHHcCCCEEEeecccCCcccccCcCCCccccHHHHHHHHHHHHHCCCEEEEEe
Confidence            34789999999999998652 21222222223467889999999999999999999976

>d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=95.17  E-value=0.013  Score=43.97  Aligned_cols=67  Identities=12%  Similarity=0.109  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHcCCCEEEEE--eeccCC--CCCC----C-----------CCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          24 TYLKEILPILAYTGATSLLIE--WEDTLP--YSLG----F-----------DNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        24 ~~lk~~i~~la~~g~n~~~l~--~ed~~p--~~~~----~-----------~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      ..|.+-||.|+.+|+|.++|-  ++..-+  ..|+    .           .+..+=|.+|+|++|+-|.+|||.||=-+
T Consensus        28 ~gi~~kLdylk~LGv~~Iwl~Pv~~~~~~~~~~gY~~~dy~~~~~~~~~~~vd~~~Gt~~d~~~LV~~aH~~GikVIlD~  107 (361)
T d1mxga2          28 DHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADV  107 (361)
T ss_dssp             HHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCEEEeCcCeeCCCCCCCCCCCcccccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence            678889999999999998762  221111  1111    0           12224489999999999999999999766


Q ss_pred             CCcchHH
Q psy2348          85 PLYSDMD   91 (131)
Q Consensus        85 ~~~GH~~   91 (131)
                       ++-|+.
T Consensus       108 -V~NH~~  113 (361)
T d1mxga2         108 -VINHRA  113 (361)
T ss_dssp             -CCSBCC
T ss_pred             -eecccc
Confidence             566654

>d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]

Probab=95.16  E-value=0.019  Score=42.80  Aligned_cols=67  Identities=15%  Similarity=0.091  Sum_probs=47.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEeeccCCC---CCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIEWEDTLPY---SLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~---~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      =+...|.+-||.|+.+|+|+++|-  .-++.   .|+      ..+..+=|.+|.|++|+.|.++||.||=.+ .+.|+
T Consensus        50 G~~~gi~~kLdyl~~lGi~~I~l~--Pv~~~~~~~gY~~~~~~~vd~~~Gt~~d~~~lv~~~H~~Gi~vilD~-V~NH~  125 (382)
T d1wzla3          50 GDLKGVIDRLPYLEELGVTALYFT--PIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDA-VFNHA  125 (382)
T ss_dssp             CCHHHHHHTHHHHHHHTCCEEEEC--CCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEE-CCSBC
T ss_pred             cCHHHHHHhhHHHHHCCCCEEEEC--CcCCCCcccCCccccccccccCCCCHHHHHHHHHHHHhcccceEeee-eeccc
Confidence            348888888999999999998772  11221   222      112223389999999999999999998653 34554

>d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclomaltodextrinase, central domain
species: Flavobacterium sp. 92 [TaxId: 197856]

Probab=95.14  E-value=0.027  Score=42.54  Aligned_cols=69  Identities=17%  Similarity=0.103  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eecc---CCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDT---LPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~---~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      +...|.+-||.|+.+|+|+++|-  ++..   ..+.|+      ..+..+=|.+|+|++|+-|.++||.||=.+ ++.|+
T Consensus        51 d~~Gl~~kLdyl~~LGv~~I~l~Pi~~~~~~~~~~~GY~~~d~~~vd~~~Gt~~df~~lv~~~H~~Gi~VilD~-V~NH~  129 (422)
T d1h3ga3          51 DIRGTIDHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDV-VLSHI  129 (422)
T ss_dssp             CHHHHHHTHHHHHHHTCCEEEECCCEECCCSSCGGGCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEE-CCSBC
T ss_pred             CHHHHHHhHHHHHHCCCCEEEeCCcccCCCCCCCCCCCCccccCCcccccCCHHHHHHHHHHHHHhCccccccC-ccccc
Confidence            67778888899999999998762  1211   112233      112334589999999999999999999877 57776


Q ss_pred             H
Q psy2348          91 D   91 (131)
Q Consensus        91 ~   91 (131)
                      .
T Consensus       130 ~  130 (422)
T d1h3ga3         130 G  130 (422)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Oligo-1,6, glucosidase
species: Bacillus cereus [TaxId: 1396]

Probab=95.12  E-value=0.017  Score=44.41  Aligned_cols=69  Identities=9%  Similarity=-0.079  Sum_probs=47.8

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~   91 (131)
                      +...|.+-||.|+.+|+|+|+|-  ++..-.+.|+      .....+=|.+|.|++|+.|.++||.||=-+- +-|+.
T Consensus        29 d~~gi~~kLdYLk~LGv~~I~l~Pi~~~~~~~~GY~~~d~~~vd~~~Gt~~df~~Lv~~aH~~Gi~VilD~V-~NH~~  105 (479)
T d1uoka2          29 DLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMKLMMDLV-VNHTS  105 (479)
T ss_dssp             CHHHHHTTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEEC-CSBCC
T ss_pred             CHHHHHHhhHHHHHcCCCEEEECCCcCCCCCCCCcCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEeccc-ccccc
Confidence            57788888899999999998771  1110112232      1122233899999999999999999998773 55543

>d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus subtilis [TaxId: 1423]

Probab=95.02  E-value=0.014  Score=44.06  Aligned_cols=106  Identities=18%  Similarity=0.046  Sum_probs=63.6

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eecc---C-------CCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDT---L-------PYSLG------FDNTNPFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~---~-------p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      +-..|.+-+|.|+.+|+|+++|-  +|..   .       .|.|+      ..+..+=|.+|+|++|+-|.+|||.||--
T Consensus        15 ~f~~i~~~ldyl~~lGv~aIwl~Pi~~~~~~~~~~~~~~~~y~gY~~~dy~~vd~~~Gt~~df~~LV~~aH~~Gi~VilD   94 (344)
T d1ua7a2          15 SFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEFKEMCAAAEEYGIKVIVD   94 (344)
T ss_dssp             CHHHHHHTHHHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEETTTEEHHHHHHHHHHHHTTTCEEEEE
T ss_pred             cHHHHHHhHHHHHHcCCCEEEeCCCeeCCCcCCCCCCCCCCccccccccCCCCCCCCCCHHHHHHHHHHhcccceeEeec
Confidence            46677788899999999999861  1110   0       02222      11233459999999999999999999966


Q ss_pred             cCCcchHH--------HHhccccccccc-ccCCC-------------CceecCCChhHHHHHHHHHh
Q psy2348          84 VPLYSDMD--------FVLKVKEFAKMR-QNFND-------------TRFICPNARSSLDLVFKMIG  128 (131)
Q Consensus        84 i~~~GH~~--------~~L~~p~~~~l~-e~~~~-------------~~~lcp~~~~t~~f~~~ll~  128 (131)
                      + ++.|+.        ..-.+|.+.+-. .....             -..|+-.+|++.+.+.++++
T Consensus        95 ~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dln~~np~Vr~~l~~~~~  160 (344)
T d1ua7a2          95 A-VINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLE  160 (344)
T ss_dssp             E-CCSBCCSCTTTSCHHHHTSTTCEEECCBCCCTTCHHHHHHSBBTTBCEECTTSHHHHHHHHHHHH
T ss_pred             c-ceeeecCCCchhhccccCCcccccCCCCCCCCCCCcCcccCccccCCccccCChHHHHHHHHHHH
Confidence            5 344432        111122221110 00000             01367789999998888765

>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Glycosyl hydrolases family 35 catalytic domain
domain: Beta-galactosidase LacA, N-terminal domain
species: Penicillium sp. [TaxId: 5081]

Probab=94.88  E-value=0.024  Score=43.10  Aligned_cols=76  Identities=9%  Similarity=0.020  Sum_probs=52.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEe--eccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHh-ccc
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIEW--EDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVL-KVK   97 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~~--ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L-~~p   97 (131)
                      ++.+...+.+++|+.+|+|.+++++  ....|-+|...   +=...++.++++.|+++||.||=+....-|.++.. .+|
T Consensus        33 ~~~~~w~~~l~~mk~~G~n~vr~~~~W~~~ep~~g~~d---f~~~~~l~~~l~~a~~~Gl~vil~~g~~~~~~w~~~~~p  109 (354)
T d1tg7a5          33 PVASLYIDIFEKVKALGFNCVSFYVDWALLEGNPGHYS---AEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFP  109 (354)
T ss_dssp             CCGGGHHHHHHHHHTTTCCEEEEECCHHHHCSBTTBCC---CCGGGCSHHHHHHHHHHTCEEEEECCSCCCTTBGGGGCC
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEecchhccCCCCCccc---ccchhhHHHHHHHHHHcCCEEEEcCCCCcCcccccCCCC
Confidence            4567788999999999999999863  33334444211   11135789999999999999998777666655544 255


Q ss_pred             cc
Q psy2348          98 EF   99 (131)
Q Consensus        98 ~~   99 (131)
                      .+
T Consensus       110 ~~  111 (354)
T d1tg7a5         110 GW  111 (354)
T ss_dssp             GG
T ss_pred             cc
Confidence            44

>d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=94.84  E-value=0.024  Score=42.91  Aligned_cols=69  Identities=17%  Similarity=0.122  Sum_probs=47.3

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEE--eeccC--------CCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          22 SLTYLKEILPILAYTGATSLLIE--WEDTL--------PYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~--~ed~~--------p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      +...|.+-||.|+.+|+|+++|-  ++...        .|.|+      .....+=|.+|+|++|+.|.++||.||=.+ 
T Consensus        50 d~~gi~~kLdyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~~~gY~~~d~~~id~~~Gt~~d~k~Lv~~~H~~Gi~VilD~-  128 (407)
T d1qhoa4          50 DLEGVRQKLPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDF-  128 (407)
T ss_dssp             CHHHHHHTHHHHHHHTCCEEEECCCEEECSSCSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEE-
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeCccccCCcccCCCCCCCCCceeeeecCCCCCCCCCHHHHHHHHHHhhhcccceeecc-
Confidence            56777888999999999998762  11110        11222      112234489999999999999999999665 


Q ss_pred             CcchHH
Q psy2348          86 LYSDMD   91 (131)
Q Consensus        86 ~~GH~~   91 (131)
                      .+.|+.
T Consensus       129 V~NH~s  134 (407)
T d1qhoa4         129 VPNHST  134 (407)
T ss_dssp             CTTEEE
T ss_pred             cccccc
Confidence            355653

>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Isomaltulose synthase PalI
species: Klebsiella sp., lx3 [TaxId: 576]

Probab=94.83  E-value=0.027  Score=43.13  Aligned_cols=67  Identities=10%  Similarity=0.002  Sum_probs=47.3

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeeccCCC----CCC-C-----CCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIEWEDTLPY----SLG-F-----DNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~----~~~-~-----~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~   91 (131)
                      +...|.+-||.|+.+|+|+|+|-  .-+++    .|+ .     .+..+=|.+|.|++|+-|.++||.||=-+ ++.|+.
T Consensus        29 d~~Gi~~kLdyLk~LGv~~I~L~--Pi~~~~~~~~GY~~~d~~~vd~~~Gt~~df~~Lv~~aH~~Gi~VilD~-V~NH~~  105 (478)
T d1m53a2          29 DIRGIIEKLDYLKSLGIDAIWIN--PHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDV-VINHTS  105 (478)
T ss_dssp             CHHHHHHTHHHHHHHTCCEEEEC--CCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEE-CCSBCC
T ss_pred             CHHHHHHhhHHHHHcCCCEEEEC--CCCCCCCCCCCcCccCCCCcCcccCCHHHHHHHHHHHHHCCCEEEecc-cccccc
Confidence            57788888999999999998761  11211    222 1     11223389999999999999999999776 344543

>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]

Probab=94.71  E-value=0.031  Score=41.57  Aligned_cols=63  Identities=11%  Similarity=0.057  Sum_probs=42.9

Q ss_pred             HHHHHHHHHcCCCEEEEE--eeccCC---CCCC-----CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          27 KEILPILAYTGATSLLIE--WEDTLP---YSLG-----FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        27 k~~i~~la~~g~n~~~l~--~ed~~p---~~~~-----~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      +++.+.|+.+|+|.|+|-  .|....   |-|+     -.+..+=|.+|.|++|+.|.++||.||--+ ++.|+
T Consensus        18 ~~~~dyl~~lG~tai~l~P~~~~~~~~~~y~gY~~~dy~vd~~~Gt~~dfk~LV~~aH~~GI~VilDv-V~NH~   90 (354)
T d1g94a2          18 QECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVDIYVDT-LINHM   90 (354)
T ss_dssp             HHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEE-ECSEE
T ss_pred             HHHHHHHHHcCCCEEEeCcCccCCCCCCCcccCCCCcceeCCCCCCHHHHHHHHHHHhccCceeEEEe-ecccc
Confidence            567788999999998872  111100   1122     112224489999999999999999999766 45565

>d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]

Probab=94.68  E-value=0.058  Score=40.62  Aligned_cols=67  Identities=15%  Similarity=0.087  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHcCCCEEEEE--eec----cCCCCCC----C--------CCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          24 TYLKEILPILAYTGATSLLIE--WED----TLPYSLG----F--------DNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        24 ~~lk~~i~~la~~g~n~~~l~--~ed----~~p~~~~----~--------~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      ..|.+-||.|+.+|+|+++|-  ++.    ..+|...    +        .+..+=|.+|.|++|+-|.++||.||=-+ 
T Consensus        21 ~gi~~kLdylk~LGvtaI~L~Pi~~~~~~~~~gy~~~~~Y~~~~~~~~~~vd~~~Gt~~df~~Lv~~~H~~Gi~VilD~-   99 (393)
T d1e43a2          21 KRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDV-   99 (393)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEE-
T ss_pred             HHHHHHHHHHHHcCCCEEEeCcCccCCCCCCCCCCcccCcccccccccCccCCCCCCHHHHHHHHHHHHHcCCEEEEEE-
Confidence            567888999999999998771  110    1111110    0        12223368999999999999999999887 


Q ss_pred             CcchHH
Q psy2348          86 LYSDMD   91 (131)
Q Consensus        86 ~~GH~~   91 (131)
                      ++.|+.
T Consensus       100 V~NH~~  105 (393)
T d1e43a2         100 VLNHKA  105 (393)
T ss_dssp             CCSEEC
T ss_pred             eecccc
Confidence            677775

>d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Amylosucrase
species: Neisseria polysaccharea [TaxId: 489]

Probab=94.64  E-value=0.039  Score=44.44  Aligned_cols=79  Identities=15%  Similarity=0.071  Sum_probs=53.7

Q ss_pred             eeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCC------CCC-C-----CCCCCCCHHHHHHHHHHHHHcC
Q psy2348          10 VLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPY------SLG-F-----DNTNPFRETEIFIILAAAESNG   77 (131)
Q Consensus        10 Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~------~~~-~-----~~~~~YT~eeikeiv~yA~~~~   77 (131)
                      -|+++.+.+.-=++.-|.+-||.|+.+|+|.++|-  ..++.      .|+ .     .+..+=|.+|+|++|+-|.++|
T Consensus        99 ~~~~~y~~~fgGDl~Gi~~kLdYLk~LGVt~I~L~--Pi~~~p~~~sd~GY~v~dy~~Vdp~lGt~edl~~Lv~~aH~rG  176 (554)
T d1g5aa2          99 VGGVCYVDLFAGDLKGLKDKIPYFQELGLTYLHLM--PLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAG  176 (554)
T ss_dssp             CEEEECHHHHHSSHHHHHTTHHHHHHHTCSEEEEC--CCBCCCSSCSTTTTSCSCSSSBCTTTCCHHHHHHHHHHHHHTT
T ss_pred             eeEEEeccccCcCHHHHHHhhHHHHHcCCCEEEEC--CCCCCCCCCCCCCcCcccCCCCCcccCCHHHHHHHHHHHHHCC
Confidence            34555543222367888888999999999998771  11111      122 1     1222238999999999999999


Q ss_pred             CeEeeccCCcchHH
Q psy2348          78 LASIPLVPLYSDMD   91 (131)
Q Consensus        78 IevIP~i~~~GH~~   91 (131)
                      |.||=-+ ++.|++
T Consensus       177 I~VilD~-V~NHts  189 (554)
T d1g5aa2         177 ISAVVDF-IFNHTS  189 (554)
T ss_dssp             CEEEEEE-CCSEEE
T ss_pred             CEEEEEE-CcCCCC
Confidence            9998776 677763

>d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltosyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.44  E-value=0.033  Score=43.61  Aligned_cols=69  Identities=14%  Similarity=0.119  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEE----Eeecc--CC--CCCC-----CC-C--------CCCCCHHHHHHHHHHHHHcCCe
Q psy2348          22 SLTYLKEILPILAYTGATSLLI----EWEDT--LP--YSLG-----FD-N--------TNPFRETEIFIILAAAESNGLA   79 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l----~~ed~--~p--~~~~-----~~-~--------~~~YT~eeikeiv~yA~~~~Ie   79 (131)
                      +...+.+-||.|+.+|+|+++|    ++...  .+  +.|+     .. .        ..+=|.+|.|++|+-|.++||+
T Consensus       118 d~~Gi~~kLdYLk~LGvtaI~L~Pi~~~~~~~~~~~~~~GY~~~dy~~~dp~~~~~~~~~~Gt~~dfk~lV~~~H~~GI~  197 (572)
T d1gjwa2         118 TFFKMMLLLPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILGIR  197 (572)
T ss_dssp             CHHHHHHTHHHHHHHTCCEEEECCCEEECCSSCSSSSCCTTSEEEEEEECGGGSCGGGTTSCHHHHHHHHHHHHHHTTCE
T ss_pred             CHHHHHHhhHHHHHcCCCEEEeCCcccCccccCCCCCCCCCCccCCCCCCcccccccccCCCCHHHHHHHHHHHHhcCcE
Confidence            6778888899999999999876    22111  01  1122     00 0        1122789999999999999999


Q ss_pred             EeeccCCcchHH
Q psy2348          80 SIPLVPLYSDMD   91 (131)
Q Consensus        80 vIP~i~~~GH~~   91 (131)
                      ||=-+ ++.|+.
T Consensus       198 VIlDv-V~NHts  208 (572)
T d1gjwa2         198 VILDF-IPRTAA  208 (572)
T ss_dssp             EEEEE-CTTEEE
T ss_pred             EEEEe-eecccc
Confidence            99765 455653

>d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endocellulase E1
species: Acidothermus cellulolyticus [TaxId: 28049]

Probab=94.34  E-value=0.099  Score=38.24  Aligned_cols=63  Identities=19%  Similarity=0.111  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEee--c----cCCCCCC--CCCC---CCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          23 LTYLKEILPILAYTGATSLLIEWE--D----TLPYSLG--FDNT---NPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~~e--d----~~p~~~~--~~~~---~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      -..+.+.++.|+.+|+|.++|-+.  .    ..+....  -.+.   +.-..+-+++++++|+++||-||-..-
T Consensus        43 ~~~~~~~~~~i~~~G~N~VRlpv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~Gl~Vildlh  116 (358)
T d1ecea_          43 SRDYRSMLDQIKSLGYNTIRLPYSDDILKPGTMPNSINFYQMNQDLQGLTSLQVMDKIVAYAGQIGLRIILDRH  116 (358)
T ss_dssp             TSCHHHHHHHHHHTTCCEEEEEEEGGGGSTTCCCCSCCCSSSCTTTTTCCHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ccHHHHHHHHHHHcCCCEEEecCcHHHccCCCCCCCccccccChhhhchhHHHHHHHHHHHHHHCCCceeeecc
Confidence            344789999999999999998542  1    1111100  0011   123367799999999999999998764

>d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Halothermothrix orenii [TaxId: 31909]

Probab=94.21  E-value=0.041  Score=40.83  Aligned_cols=68  Identities=18%  Similarity=0.127  Sum_probs=45.5

Q ss_pred             CHHHHHHHHHHH--------HHcCCCEEEEE--eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          22 SLTYLKEILPIL--------AYTGATSLLIE--WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        22 ~~~~lk~~i~~l--------a~~g~n~~~l~--~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      +...|.+-+|.|        +.+|+|+++|-  ++... +.|+      -.+..+=|.+|+|++|+.|.++||.||=.+ 
T Consensus        25 d~~g~~~kLdyl~~~~~~~i~~LGv~~i~l~Pi~~~~~-~~GY~~~d~~~vd~~~G~~~dlk~lv~~~H~~Gi~VilD~-  102 (409)
T d1wzaa2          25 DLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPS-YHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDL-  102 (409)
T ss_dssp             CHHHHHHTHHHHCCSCTTCCSSCCCSEEEECCCEECSS-SSCCSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEC-
T ss_pred             CHHHHHHhccccccccccHHhhcCccEEEECCCCCCCC-CCCcCcccCCCcCcccCCHHHHHHHHHHHHhcCCEEEEec-
Confidence            455555556665        78999998772  12111 2222      112223389999999999999999999988 


Q ss_pred             CcchHH
Q psy2348          86 LYSDMD   91 (131)
Q Consensus        86 ~~GH~~   91 (131)
                      .+.|+.
T Consensus       103 V~NH~~  108 (409)
T d1wzaa2         103 PINHTS  108 (409)
T ss_dssp             CCSBCC
T ss_pred             cccccc
Confidence            677763

>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-mannanase
species: Thermomonospora fusca [TaxId: 2021]

Probab=94.09  E-value=0.073  Score=38.43  Aligned_cols=68  Identities=13%  Similarity=0.124  Sum_probs=45.2

Q ss_pred             CCCceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348           6 TFKEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus         6 ~f~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      +|.-||+-..-.- ++.   ..+-|+.|+++|+|++++-+-...+|.       .-..+.++++++.|.++||-||-.+
T Consensus        18 ~~~lrGvn~~~~~-~~~---~~~~~~~i~~~G~N~VRl~~~~~~~~~-------~~~~~~~~~~v~~a~~~Gi~vildl   85 (302)
T d1bqca_          18 EFIIRGVSHPHNW-YPQ---HTQAFADIKSHGANTVRVVLSNGVRWS-------KNGPSDVANVISLCKQNRLICMLEV   85 (302)
T ss_dssp             BCCCEEEEECTTT-CTT---CTTHHHHHHHTTCSEEEEEECCSSSSC-------CCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEEEeecCccc-ccc---hHHHHHHHHhcCCCEEEEecccccccC-------cchHHHHHHHHHHHHHCCCEEEEEe
Confidence            3556677653211 111   134578899999999999664322221       1236789999999999999999655

>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.84  E-value=0.046  Score=41.22  Aligned_cols=63  Identities=17%  Similarity=0.074  Sum_probs=42.9

Q ss_pred             HHHHHHHHHcCCCEEEEE--eec---cCC----CCCC-----CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          27 KEILPILAYTGATSLLIE--WED---TLP----YSLG-----FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        27 k~~i~~la~~g~n~~~l~--~ed---~~p----~~~~-----~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      .++.+.|+.+|+|.|+|-  .|.   ..+    |.|+     -.+..+=|.+|.|++|+-|.++||.||=-+ .+-|+
T Consensus        26 ~e~~~yL~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~dY~v~~~~Gt~~dfk~Lv~~aH~~GI~VIlDv-V~NH~  102 (403)
T d1hx0a2          26 LECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDMVTRCNNVGVRIYVDA-VINHM  102 (403)
T ss_dssp             HHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEE-CCSEE
T ss_pred             HHHHHHHHHhCCCEEEeCcCccCccCCCCCCCCceeecCCCCccCCCCCCHHHHHHHHHHHHhcCCEEEEEE-ecccc
Confidence            466778999999998772  111   111    1222     112345689999999999999999999665 44554

>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (2r)-phospho-3-sulfolactate synthase ComA
family: (2r)-phospho-3-sulfolactate synthase ComA
domain: (2r)-phospho-3-sulfolactate synthase ComA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.78  E-value=0.076  Score=39.30  Aligned_cols=27  Identities=19%  Similarity=0.139  Sum_probs=25.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          59 NPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        59 ~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      ...+.++..+++..|+++|++|+||+=
T Consensus       109 ~~i~~~~~~~~I~~~~~~G~~V~~EvG  135 (251)
T d1qwga_         109 SDISLEERNNAIKRAKDNGFMVLTEVG  135 (251)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             cCCCHHHHHHHHHHHHhCCCEEeeccc
Confidence            368999999999999999999999995

>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase CelC
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.73  E-value=0.097  Score=38.79  Aligned_cols=57  Identities=12%  Similarity=0.075  Sum_probs=39.7

Q ss_pred             HHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCC---HHHHHHHHHHHHHcCCeEeeccC
Q psy2348          27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFR---ETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        27 k~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT---~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      ++-|+.|+.+|+|.++|-+.-. .+.. -.+.+.|.   -+.++++++.|+++||.||-.+-
T Consensus        31 e~d~~~i~~~G~n~vRlpi~~~-~~~~-~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~H   90 (340)
T d1ceoa_          31 EKDIETIAEAGFDHVRLPFDYP-IIES-DDNVGEYKEDGLSYIDRCLEWCKKYNLGLVLDMH   90 (340)
T ss_dssp             HHHHHHHHHHTCCEEEEEEEGG-GTBC-SSSTTCBCHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHcCCCEEEeecCHH-Hhcc-CCCCCccCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence            4568999999999999854210 0111 11233455   35689999999999999998763

>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]

Probab=93.55  E-value=0.037  Score=41.48  Aligned_cols=83  Identities=13%  Similarity=0.055  Sum_probs=51.0

Q ss_pred             CCCCc-eeEEeec-CCCCCCHHHHHHHHH-HHHHcCCCEEEEE--eeccCC-----CCCCCC-----CCCCCCHHHHHHH
Q psy2348           5 STFKE-VLVHLDL-KGAPPSLTYLKEILP-ILAYTGATSLLIE--WEDTLP-----YSLGFD-----NTNPFRETEIFII   69 (131)
Q Consensus         5 P~f~~-Rg~mlD~-~~~~~~~~~lk~~i~-~la~~g~n~~~l~--~ed~~p-----~~~~~~-----~~~~YT~eeikei   69 (131)
                      |.+.. +.+||-. .-   +-..|.+-++ .|+.+|+|.++|-  .|...+     |.++.+     +..+=|.+|.|++
T Consensus         4 ~~~~~~~~~i~~~f~W---~~~~i~~~~~~yl~~lG~tai~l~P~~e~~~~~~~~~~~~Y~~~dY~id~~~Gt~~df~~L   80 (378)
T d1jaea2           4 ANFASGRNSIVHLFEW---KWNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGDESAFTDM   80 (378)
T ss_dssp             CCCCTTCEEEEEETTC---CHHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCSCSEETTEEHHHHHHH
T ss_pred             CCCCCCCceEEEeccC---cHHHHHHHHHHHHHHhCCCEEEeCcccccCCCCCCCCccccCCccceeCCCCCCHHHHHHH
Confidence            34443 5677665 22   3555665555 5999999998761  111110     111111     1112389999999


Q ss_pred             HHHHHHcCCeEeeccCCcchHH
Q psy2348          70 LAAAESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        70 v~yA~~~~IevIP~i~~~GH~~   91 (131)
                      |+-|.++||.||=-+ .+.|+.
T Consensus        81 V~~aH~~GI~VilDv-V~NH~~  101 (378)
T d1jaea2          81 TRRCNDAGVRIYVDA-VINHMT  101 (378)
T ss_dssp             HHHHHHTTCEEEEEE-CCSBCC
T ss_pred             HHHHHhcCceeeeee-cccccc
Confidence            999999999999765 566753

>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: YicI catalytic domain-like
domain: Alpha-galactosidase GalA catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.50  E-value=0.1  Score=39.25  Aligned_cols=104  Identities=10%  Similarity=0.041  Sum_probs=67.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEE--eeccCCCCCC-CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCC----cchHHHH
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIE--WEDTLPYSLG-FDNTNPFRETEIFIILAAAESNGLASIPLVPL----YSDMDFV   93 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~--~ed~~p~~~~-~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~----~GH~~~~   93 (131)
                      .+-+.+++.++.|+++|++.+.+-  |.+.   .|+ ..+...+-  .+|.++++++++|+.+..-+.-    ++ +...
T Consensus        20 i~e~~i~~~a~~~~~~g~~~i~iDdgW~~~---~gd~~~d~~~FP--glk~l~~~~h~~G~k~gl~~~p~~~~~~-s~~~   93 (348)
T d1zy9a2          20 LTWEETLKNLKLAKNFPFEVFQIDDAYEKD---IGDWLVTRGDFP--SVEEMAKVIAENGFIPGIWTAPFSVSET-SDVF   93 (348)
T ss_dssp             CCHHHHHHHHHHGGGTTCSEEEECTTSEEE---TTEEEEECTTCC--CHHHHHHHHHHTTCEEEEEECTTEEETT-CHHH
T ss_pred             CCHHHHHHHHHHHHcCCCcEEEECcccccC---CCCceECcccCc--CHHHHHHHHHhcCCEEEEEeeeccccCC-cHHH
Confidence            477889999999999999987663  2211   122 22333454  6999999999999998866542    22 1222


Q ss_pred             hcccccccccc---------cCCCCceecCCChhHHHHHHHHHhhh
Q psy2348          94 LKVKEFAKMRQ---------NFNDTRFICPNARSSLDLVFKMIGRL  130 (131)
Q Consensus        94 L~~p~~~~l~e---------~~~~~~~lcp~~~~t~~f~~~ll~ev  130 (131)
                      -++|++.....         .......+|+++|++.+++++.++.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~~p~~~~~~~~~~~~~  139 (348)
T d1zy9a2          94 NEHPDWVVKENGEPKMAYRNWNKKIYALDLSKDEVLNWLFDLFSSL  139 (348)
T ss_dssp             HHCGGGBCEETTEECEEEEETTEEEEEBCTTCHHHHHHHHHHHHHH
T ss_pred             HhCccceeccCCCCccccccCCCCeeccCCCcHHHHHHHHHHHHHH
Confidence            23554432111         11122478999999999999988754

>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Exo-beta-(1,3)-glucanase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=93.41  E-value=0.13  Score=39.37  Aligned_cols=52  Identities=13%  Similarity=0.105  Sum_probs=37.0

Q ss_pred             HHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCC---HHHHHHHHHHHHHcCCeEeecc
Q psy2348          30 LPILAYTGATSLLIEWEDTLPYSLGFDNTNPFR---ETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        30 i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT---~eeikeiv~yA~~~~IevIP~i   84 (131)
                      |+.|+.+|+|.++|-+.- ..+..  ..++.|.   .+-++++++.|+++||-||.-+
T Consensus        74 ~~~i~~~G~N~VRiPv~~-~~~~~--~~~~~~~~~~~~~ld~~i~~a~~~gl~VilDl  128 (394)
T d2pb1a1          74 FKQISNLGLNFVRIPIGY-WAFQL--LDNDPYVQGQVQYLEKALGWARKNNIRVWIDL  128 (394)
T ss_dssp             HHHHHHTTCCEEEEEEEG-GGTCC--CTTCCCCCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHCCCCEEEEEecH-HHhcC--CCCCccchhHHHHHHHHHHHHHHCCcEEEEEe
Confidence            778999999999996531 11111  1123333   5778999999999999999765

>d1qtwa_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Endonuclease IV
domain: Endonuclease IV
species: Escherichia coli [TaxId: 562]

Probab=93.01  E-value=0.1  Score=37.15  Aligned_cols=64  Identities=20%  Similarity=0.126  Sum_probs=49.2

Q ss_pred             CceeEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348           8 KEVLVHLDLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP   82 (131)
Q Consensus         8 ~~Rg~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP   82 (131)
                      .+-|+|+.+++      .|..-+...+++|++++++...+.-.    |. ....+.++++++-+.+++.|+.+..
T Consensus         2 ~~~~~h~s~~~------~l~~a~~~a~e~G~~~ieif~~~P~~----w~-~~~~~~~~~~~~k~~~~~~gl~~~~   65 (285)
T d1qtwa_           2 KYIGAHVSAAG------GLANAAIRAAEIDATAFALFTKNQRQ----WR-AAPLTTQTIDEFKAACEKYHYTSAQ   65 (285)
T ss_dssp             CEEEEECCCTT------CHHHHHHHHHHTTCSEEECCSSCSSC----SS-CCCCCHHHHHHHHHHHHHTTCCGGG
T ss_pred             CcEEEEecccc------CHHHHHHHHHHcCCCEEEEECCCCCC----CC-CCCCCHHHHHHHHHHHHHcCCCcce
Confidence            46788888875      46778889999999998884433111    32 2378999999999999999998665

>d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Exo-beta-(1,3)-glucanase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.87  E-value=0.12  Score=39.99  Aligned_cols=54  Identities=13%  Similarity=0.020  Sum_probs=36.4

Q ss_pred             HHHHHHcCCCEEEEEeec-cC-CCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          30 LPILAYTGATSLLIEWED-TL-PYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        30 i~~la~~g~n~~~l~~ed-~~-p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      |+.|+.+|+|.++|-+.- .| +..+. ..-.....+-++++|++|+++||-||-.+
T Consensus        79 ~~~i~~~G~N~VRiPi~~~~~~~~~~~-~~~~~~~~~~ld~~v~~a~~~gl~VilDl  134 (408)
T d1h4pa_          79 FANIASQGFNLVRIPIGYWAFQILDDD-PYVSGLQESYLDQAIGWARNNSLKVWVDL  134 (408)
T ss_dssp             HHHHHHTTCCEEEEEEEGGGTCCCTTC-CCCCSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHCCCCEEEEeccHHHhcCCCCC-CCcChhHHHHHHHHHHHHHHCCCEEEEEe
Confidence            678999999999996531 11 11111 00112234669999999999999999655

>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Exochitosanase CsxA
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=92.84  E-value=0.18  Score=36.53  Aligned_cols=53  Identities=13%  Similarity=0.078  Sum_probs=42.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD   89 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH   89 (131)
                      ..+.+..++.|.+|.++|+|.++++  +. +     .     +    .++.+.|.+.||-|+.+..++|+
T Consensus        35 ~~~~~~~~~~l~~~k~~G~N~iR~~--~~-~-----~-----~----~~f~d~~D~~Gi~V~~e~~~~~~   87 (339)
T d2vzsa5          35 RWNETAAADKLKYVLNLGLNTVRLE--GH-I-----E-----P----DEFFDIADDLGVLTMPGWECCDK   87 (339)
T ss_dssp             CCCHHHHHHHHHHHHHTTCCEEEEE--SC-C-----C-----C----HHHHHHHHHHTCEEEEECCSSSG
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEec--CC-C-----C-----C----HHHHHHHHHCCCeEecccccCcc
Confidence            4688999999999999999999984  11 1     0     1    45889999999999999887764

>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-1,4-galactanase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=92.74  E-value=0.14  Score=38.68  Aligned_cols=51  Identities=14%  Similarity=0.105  Sum_probs=42.2

Q ss_pred             HHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          27 KEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        27 k~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      +.+++.|+..|+|.+++..- .-|.      .|.++.++++++++.|+++|+.|+..+
T Consensus        30 ~d~~~~lk~~G~n~VRlrvW-~~p~------~g~~~~~~~~~~~~~a~~~Gm~vll~~   80 (334)
T d1foba_          30 QALETILADAGINSIRQRVW-VNPS------DGSYDLDYNLELAKRVKAAGMSLYLDL   80 (334)
T ss_dssp             CCHHHHHHHHTCCEEEEEEC-SCCT------TCTTCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccHHHHHHHcCCCEEEeeee-eCCC------CCcCcHHHHHHHHHHHHHCCCEEEEEe
Confidence            35778899999999999751 1133      368899999999999999999999887

>d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas haloplanktis [TaxId: 228]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase Cel5a
species: Pseudoalteromonas haloplanktis [TaxId: 228]

Probab=92.19  E-value=0.12  Score=37.56  Aligned_cols=66  Identities=9%  Similarity=-0.183  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCC-CCCCCCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFD-NTNPFRETEIFIILAAAESNGLASIPLVPLY   87 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~-~~~~YT~eeikeiv~yA~~~~IevIP~i~~~   87 (131)
                      .++.+.+.++.+   ++.+|+|.+++-+.. .++.+... .......+.++++++.|+++||-||=.+-.+
T Consensus        36 ~~~~~~~~~~~l---~~~~g~N~VR~~~~~-~~~~~~~~~~~~~~~l~~ld~~v~~a~~~gi~vild~h~~  102 (293)
T d1tvna1          36 EKFYTAETVAKA---KTEFNATLIRAAIGH-GTSTGGSLNFDWEGNMSRLDTVVNAAIAEDMYVIIDFHSH  102 (293)
T ss_dssp             GGGCSHHHHHHH---HHHHCCSEEEEEEEC-CTTSTTSTTTCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred             CcccCHHHHHHH---HHhCCCcEEEEeccc-ccccccccccCcHHHHHHHHHHHHHHHHcCCEEEecCccC
Confidence            356666665543   346899999995432 12222111 1112345678999999999999998655333

>d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus [TaxId: 5087]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endocellulase EngI
species: Thermoascus aurantiacus [TaxId: 5087]

Probab=92.08  E-value=0.15  Score=37.56  Aligned_cols=57  Identities=14%  Similarity=0.161  Sum_probs=40.5

Q ss_pred             HHHHHHHHHcCCCEEEEEee--ccCCCCCCCCCCCCCC---HHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348          27 KEILPILAYTGATSLLIEWE--DTLPYSLGFDNTNPFR---ETEIFIILAAAESNGLASIPLVPLY   87 (131)
Q Consensus        27 k~~i~~la~~g~n~~~l~~e--d~~p~~~~~~~~~~YT---~eeikeiv~yA~~~~IevIP~i~~~   87 (131)
                      +.-|+.|+..|+|.++|-+.  ...|..    ..+.+.   .+.++++|++|.++|+-||-.+-..
T Consensus        34 ~~di~~l~~~G~N~VRlPv~~~~~~~~~----~~~~~~~~~~~~l~~~v~~a~~~gl~vIlD~H~~   95 (305)
T d1h1na_          34 PNTIDTLISKGMNIFRVPFMMERLVPNS----MTGSPDPNYLADLIATVNAITQKGAYAVVDPHNY   95 (305)
T ss_dssp             HHHHHHHHHTTCCEEEEEECHHHHSCSS----TTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             HHHHHHHHHCCCCEEEeeeeHHHhccCC----CCCccCHHHHHHHHHHHHHHHhcCCeEEEecccC
Confidence            56688899999999998652  211211    123344   4589999999999999999876544

>d1yq2a5 c.1.8.3 (A:313-609) beta-Galactosidase, domain 3 {Arthrobacter sp. c2-2 [TaxId: 192168]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: beta-Galactosidase, domain 3
species: Arthrobacter sp. c2-2 [TaxId: 192168]

Probab=91.89  E-value=0.18  Score=36.55  Aligned_cols=58  Identities=16%  Similarity=0.024  Sum_probs=47.2

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHH
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDF   92 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~   92 (131)
                      +..++.+.+++-|..|.++|+|.++++.   +|.          +    .++.+.|.+.||-|+.++...+|...
T Consensus        30 G~a~~~~~~~~di~l~k~~G~N~iR~~h---~p~----------~----~~~~d~cD~~Gilv~~e~~~~~~~~~   87 (297)
T d1yq2a5          30 GRVFDEAGAREDLALMKRFNVNAIRTSH---YPP----------H----PRLLDLADEMGFWVILECDLETHGFE   87 (297)
T ss_dssp             TTCCCHHHHHHHHHHHHHTTCCEEEETT---SCC----------C----HHHHHHHHHHTCEEEEECSCBCGGGT
T ss_pred             CcCCCHHHHHHHHHHHHHCCCCEEEccC---CCC----------h----HHHHHHHHhcCCEEEEeecccccccc
Confidence            6678899999999999999999999832   221          1    47999999999999999988777543

>d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId: 76935]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase Cel5a
species: Bacillus agaradhaerens [TaxId: 76935]

Probab=91.84  E-value=0.21  Score=36.18  Aligned_cols=51  Identities=14%  Similarity=-0.102  Sum_probs=33.8

Q ss_pred             HHHHH-HHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348          29 ILPIL-AYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus        29 ~i~~l-a~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      -++.| +.+|+|.+++-+.   |-.+ ....+....+.++++|+.|+++||-||=.
T Consensus        45 ~~~~l~~~~G~N~VR~~~~---~~~~-~~~~~~~~~~~ld~~v~~a~~~Gl~Vild   96 (300)
T d7a3ha_          45 SMKWLRDDWGINVFRAAMY---TSSG-GYIDDPSVKEKVKEAVEAAIDLDIYVIID   96 (300)
T ss_dssp             HHHHHHHHTCCCEEEEEEE---SSTT-STTTCTTHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHcCCCEEEEeeE---cCcc-CcccCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence            34444 4799999998542   1111 11113444778999999999999999943

>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Outer surface protein, N-terminal domain
domain: Outer surface protein, N-terminal domain
species: Bacillus cereus [TaxId: 1396]

Probab=91.79  E-value=0.19  Score=36.92  Aligned_cols=68  Identities=13%  Similarity=0.074  Sum_probs=45.1

Q ss_pred             eEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEEE---eeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC--
Q psy2348          11 LVHLDLKGAPPSLTYLKEILPILAYTGATSLLIE---WEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP--   85 (131)
Q Consensus        11 g~mlD~~~~~~~~~~lk~~i~~la~~g~n~~~l~---~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~--   85 (131)
                      |+.+-...  .+.+..+++|+.++.+|++.+.--   .|+          ...-..+++++|+++|+++|++||--|+  
T Consensus         6 GiSvY~~~--~~~e~~~~yi~~a~~~Gf~~iFTSL~~~e~----------~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~   73 (244)
T d1x7fa2           6 GISLYPEH--STKEKDMAYISAAARHGFSRIFTCLLSVNR----------PKEEIVAEFKEIINHAKDNNMEVILDVAPA   73 (244)
T ss_dssp             EEEECGGG--SCHHHHHHHHHHHHTTTEEEEEEEECCC------------------HHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             EEEEccCC--CCHHHHHHHHHHHHHCCCCEEEecCccCCC----------CHHHHHHHHHHHHHHHHHCCCEEEEEcCHH
Confidence            55554442  478889999999999999876432   221          1122367799999999999999998875  


Q ss_pred             CcchH
Q psy2348          86 LYSDM   90 (131)
Q Consensus        86 ~~GH~   90 (131)
                      ++.++
T Consensus        74 ~l~~l   78 (244)
T d1x7fa2          74 VFDQL   78 (244)
T ss_dssp             CC---
T ss_pred             HHHHh
Confidence            34443

>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: beta-Glucuronidase, domain 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.14  E-value=0.23  Score=35.24  Aligned_cols=65  Identities=18%  Similarity=0.221  Sum_probs=47.1

Q ss_pred             CceeEEe----ecCCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348           8 KEVLVHL----DLKGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus         8 ~~Rg~ml----D~~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      --||+-.    ...+.-++.+.+++-|.+|+.+|+|.+++.   ..|.          +    .++.+.|.++||-|+.+
T Consensus        16 ~lrG~~~~~~~~~~g~~~~~~~~~~d~~~~k~~G~N~iR~~---~~~~----------~----~~~~~~cD~~Gilv~~e   78 (304)
T d1bhga3          16 YFHGVNKHEDADIRGKGFDWPLLVKDFNLLRWLGANAFRTS---HYPY----------A----EEVMQMCDRYGIVVIDE   78 (304)
T ss_dssp             CEEEEECCSCBTTTBTCCCHHHHHHHHHHHHHHTCCEEECT---TSCC----------S----STHHHHHSTTCCEEEEC
T ss_pred             EEEeEEcCCCCCccCCCCCHHHHHHHHHHHHHcCCCEEEec---CCCC----------h----HHHHHHHHhcCCeeeec
Confidence            3466532    233555689999999999999999999872   1111          1    24788999999999998


Q ss_pred             cCCcch
Q psy2348          84 VPLYSD   89 (131)
Q Consensus        84 i~~~GH   89 (131)
                      +...++
T Consensus        79 ~~~~~~   84 (304)
T d1bhga3          79 CPGVGL   84 (304)
T ss_dssp             CSCCCT
T ss_pred             cccccc
Confidence            865544

>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: alpha-D-glucuronidase/Hyaluronidase catalytic domain
domain: Glucosaminidase GH84, catalytic domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=91.14  E-value=0.41  Score=36.04  Aligned_cols=62  Identities=18%  Similarity=0.200  Sum_probs=45.0

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCC-CCC-CCCCCCCCHH---HHHHHHHHHHHcCCeEee
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPY-SLG-FDNTNPFRET---EIFIILAAAESNGLASIP   82 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~-~~~-~~~~~~YT~e---eikeiv~yA~~~~IevIP   82 (131)
                      |.+.+-+.=+++++.|+.+|+|+.+ |=-..=|| +.. |+  ..|+++   +++++++.|++.||++|=
T Consensus        12 G~pws~~~R~~l~~~l~~~~mn~Y~-YaPKdD~~hR~~~Wr--~~yp~~~~~~~~~l~~~a~~~~i~f~~   78 (310)
T d2choa2          12 GTPWSHQARLSQLKFYGKNKMNTYI-YGPKDDPYHSAPNWR--LPYPDKEAAQLQELVAVANENEVDFVW   78 (310)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTCCEEE-ECCTTCTTTSTTGGG--SCCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHcCCcEEE-EccCCChhhChhhhc--ccCCHHHHHHHHHHHHHHHHcCCeEEE
Confidence            6778889999999999999999733 22111133 222 55  689855   556799999999999983

>d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]

Probab=90.98  E-value=0.27  Score=36.82  Aligned_cols=68  Identities=10%  Similarity=0.033  Sum_probs=45.5

Q ss_pred             CHHHHHHHHHHHHH-cCCCEEEEE--eeccCCCCCC------CCCCCCCCHHHHHHHHHHHHHcC----CeEeeccCCcc
Q psy2348          22 SLTYLKEILPILAY-TGATSLLIE--WEDTLPYSLG------FDNTNPFRETEIFIILAAAESNG----LASIPLVPLYS   88 (131)
Q Consensus        22 ~~~~lk~~i~~la~-~g~n~~~l~--~ed~~p~~~~------~~~~~~YT~eeikeiv~yA~~~~----IevIP~i~~~G   88 (131)
                      +..-|.+-||.|++ +|+|+++|-  ++ ...+.|+      ..+..+=|.+|.|++|+-|.+||    |.||=.+ ++.
T Consensus        67 dl~Gi~~kLdYl~~~LGv~~I~L~Pi~~-~~~~~GY~~~d~~~id~~~Gt~~d~~~lv~~~H~~g~~~~I~VilD~-V~N  144 (432)
T d1ji1a3          67 DLAGIDQKLGYIKKTLGANILYLNPIFK-APTNHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILDG-VFN  144 (432)
T ss_dssp             CHHHHHHTHHHHHTTTCCCEEEESCCEE-CSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHCSSSSSCCEEEEEE-CCS
T ss_pred             CHHHHHHHhhHHHhhcCCCEEEeCCCCc-CCCCCCcccccccccCcccCCHHHHHHHHHHHHHhhhhcceeEeccc-ccc
Confidence            46677888899986 999998872  11 1112333      11233448999999999999987    7777653 355


Q ss_pred             hHH
Q psy2348          89 DMD   91 (131)
Q Consensus        89 H~~   91 (131)
                      |+.
T Consensus       145 H~s  147 (432)
T d1ji1a3         145 HTG  147 (432)
T ss_dssp             BCC
T ss_pred             ccC
Confidence            543

>d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.45  E-value=0.34  Score=37.11  Aligned_cols=28  Identities=21%  Similarity=0.307  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHH-HHcCCeEeeccCCcchHH
Q psy2348          63 ETEIFIILAAA-ESNGLASIPLVPLYSDMD   91 (131)
Q Consensus        63 ~eeikeiv~yA-~~~~IevIP~i~~~GH~~   91 (131)
                      .+|.|++|+-| .+|||.||=-+ .+.|++
T Consensus       179 l~Efk~lV~a~~H~rGIkVIlD~-V~NHts  207 (563)
T d2fhfa5         179 IKEFRTMIQAIKQDLGMNVIMDV-VYNHTN  207 (563)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEEE-CTTEES
T ss_pred             HHHHHHHHHHHhhccCceeeecC-cccccC
Confidence            78999999876 78999999332 467764

>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Five-domain beta-mannosidase, domain 3
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=90.40  E-value=0.32  Score=34.89  Aligned_cols=53  Identities=9%  Similarity=0.023  Sum_probs=41.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCc
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLY   87 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~   87 (131)
                      ..+.+.+++.|.++.++|+|.++++--+..      .     +    +++.+.|.+.||-|+-++...
T Consensus        41 ~~~~e~~~~di~l~ke~G~N~IR~~~~~~~------p-----~----~~f~d~cD~~GilV~~e~~~~   93 (348)
T d2je8a5          41 NVTTERYQTLFRDMKEANMNMVRIWGGGTY------E-----N----NLFYDLADENGILVWQDFMFA   93 (348)
T ss_dssp             GCCHHHHHHHHHHHHHTTCCEEEECTTSCC------C-----C----HHHHHHHHHHTCEEEEECSCB
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEecCCCCCC------C-----C----HHHHHHHHHCCCEEEeccchh
Confidence            469999999999999999999998321111      1     1    578999999999999998543

>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltooligosyl trehalose synthase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=89.97  E-value=0.38  Score=39.74  Aligned_cols=71  Identities=15%  Similarity=0.018  Sum_probs=50.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEE--eecc-CCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIE--WEDT-LPYSLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~--~ed~-~p~~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      =++...+.+.+|.|+.+|+|.+.+-  ++.. --+-|+      --++.+=|.+|.+++++-|.++||.||=-| .|-|+
T Consensus        13 gftF~~~~~~LpYL~~LGVs~IyLsPi~~a~~gS~HGYDv~D~~~Vdp~lGt~edf~~LV~aaH~~Gm~VIlDi-VpNH~   91 (653)
T d1iv8a2          13 NFNFGDVIDNLWYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQDI-VPNHM   91 (653)
T ss_dssp             TBCHHHHHHTHHHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEECTTTTHHHHHHHHHHHHHHTTCEEEEEE-CCSEE
T ss_pred             CCCHHHHHHhhHHHHHCCCCEEEECccCCCCCCCCCCccccCccccchhcCCHHHHHHHHHHHHHCCCEEEEEE-CCCcc
Confidence            3588899999999999999998761  1110 001122      112334589999999999999999998665 56676


Q ss_pred             H
Q psy2348          91 D   91 (131)
Q Consensus        91 ~   91 (131)
                      .
T Consensus        92 g   92 (653)
T d1iv8a2          92 A   92 (653)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Alkaline cellulase K catalytic domain
species: Bacillus sp. [TaxId: 1409]

Probab=89.95  E-value=0.44  Score=35.20  Aligned_cols=52  Identities=12%  Similarity=0.021  Sum_probs=35.2

Q ss_pred             HHHHHHH-HcCCCEEEEEeec-cCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          28 EILPILA-YTGATSLLIEWED-TLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        28 ~~i~~la-~~g~n~~~l~~ed-~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      +-++.|+ .+|+|.+++-+.- ..+|   ..++. | .+.++++|++|.++||-||-.+
T Consensus        55 ~~~~~l~~~~G~N~VRlp~~~~~~~~---~~~~~-~-~~~ld~~V~~a~~~GiyVIlD~  108 (357)
T d1g01a_          55 NAFVALSNDWGSNMIRLAMYIGENGY---ATNPE-V-KDLVYEGIELAFEHDMYVIVDW  108 (357)
T ss_dssp             HHHHHHHTTSCCSEEEEEEESSSSST---TTCTT-H-HHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHhcCCCEEEEeeeecCCCC---ccCHH-H-HHHHHHHHHHHHHCCCEEEEee
Confidence            4566676 4899999985421 1112   11222 2 5789999999999999999554

>d1jz8a5 c.1.8.3 (A:334-625) beta-Galactosidase, domain 3 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: beta-Galactosidase, domain 3
species: Escherichia coli [TaxId: 562]

Probab=89.81  E-value=0.48  Score=33.75  Aligned_cols=56  Identities=7%  Similarity=0.069  Sum_probs=44.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcch
Q psy2348          17 KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSD   89 (131)
Q Consensus        17 ~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH   89 (131)
                      .+..++.+.+++-|.+|.++|+|+++++.   +|          .+    .++.+.|.+.||-|+-++...+|
T Consensus        30 ~g~~~~~~~~~~di~l~k~~G~N~iR~~~---~p----------~~----~~~~~~~D~~Gilv~~e~~~~~~   85 (292)
T d1jz8a5          30 HGQVMDEQTMVQDILLMKQNNFNAVRCSH---YP----------NH----PLWYTLCDRYGLYVVDEANIETH   85 (292)
T ss_dssp             TBTCCCHHHHHHHHHHHHHTTCCEEECTT---SC----------CC----HHHHHHHHHHTCEEEEECSCBCT
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCCEEEecC---CC----------Ch----HHHHHHHhhcCCeEEeeeeeccc
Confidence            35568899999999999999999998732   11          11    35899999999999999966554

>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: NeuB-like
domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.52  E-value=0.36  Score=35.67  Aligned_cols=83  Identities=10%  Similarity=0.028  Sum_probs=61.8

Q ss_pred             eecC-CCCCCHHHHHHHHHHHHHcCCCEEEEEeec--cC-----CCCCC----------CCCCCCCCHHHHHHHHHHHHH
Q psy2348          14 LDLK-GAPPSLTYLKEILPILAYTGATSLLIEWED--TL-----PYSLG----------FDNTNPFRETEIFIILAAAES   75 (131)
Q Consensus        14 lD~~-~~~~~~~~lk~~i~~la~~g~n~~~l~~ed--~~-----p~~~~----------~~~~~~YT~eeikeiv~yA~~   75 (131)
                      -.++ +|-=+++..+++|+..+.-|++.+-+.+-+  ..     ++...          +...--+|.+++++|.+||++
T Consensus        20 AEig~nH~G~~~~ak~lI~~A~~sGAdaVKFQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~els~~~~~~l~~~~k~   99 (295)
T d1vlia2          20 AEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCRE   99 (295)
T ss_dssp             EEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHH
T ss_pred             EEecCCcCccHHHHHHHHHHHHHcCCCEEEEeeecchhceecccccccccCcccccccccchheecCHHHhhhHHHHhhh
Confidence            3453 777799999999999999999987766522  11     00000          111225899999999999999


Q ss_pred             cCCeEeeccCCcchHHHHhcc
Q psy2348          76 NGLASIPLVPLYSDMDFVLKV   96 (131)
Q Consensus        76 ~~IevIP~i~~~GH~~~~L~~   96 (131)
                      .||.++-.+-...-.+++.+.
T Consensus       100 ~gi~~~~s~fd~~s~~~l~~l  120 (295)
T d1vlia2         100 KQVIFLSTVCDEGSADLLQST  120 (295)
T ss_dssp             TTCEEECBCCSHHHHHHHHTT
T ss_pred             cccceeeecccceeeeeeccc
Confidence            999999999999988887663

>d2cbia2 c.1.8.10 (A:179-495) Hyaluronidase catalytic domain {Clostridium perfringens [TaxId: 1502]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: alpha-D-glucuronidase/Hyaluronidase catalytic domain
domain: Hyaluronidase catalytic domain
species: Clostridium perfringens [TaxId: 1502]

Probab=89.46  E-value=0.51  Score=35.64  Aligned_cols=64  Identities=13%  Similarity=0.185  Sum_probs=45.4

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCC-CCCCCCCCCCHH---HHHHHHHHHHHcCCeEeecc
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYS-LGFDNTNPFRET---EIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~-~~~~~~~~YT~e---eikeiv~yA~~~~IevIP~i   84 (131)
                      |.+.+-+.=+++++.|+.+|+|+.+ |=-..=||- ..|+  ..|+++   +++++++.|++.||++|=-|
T Consensus        12 G~pws~e~R~~l~~~l~~~~mn~Yi-YAPKdD~~hR~~Wr--~~Yp~~~l~~~~~l~~~a~~~~v~fv~~i   79 (317)
T d2cbia2          12 GTPWTHQDRLDQIKFYGENKLNTYI-YAPKDDPYHREKWR--EPYPESEMQRMQELINASAENKVDFVFGI   79 (317)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTCCEEE-ECCTTCGGGTTTTT--SCCCGGGHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHcCCcEEE-EecCCCHHHHHHhC--ccCCHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            6678889999999999999999743 111001221 1155  567764   67888999999999988444

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=89.04  E-value=0.92  Score=34.26  Aligned_cols=60  Identities=17%  Similarity=0.167  Sum_probs=46.7

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEee
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIP   82 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP   82 (131)
                      +--++++.+++.++.....+.+...+-+-.  |  . -+.|..||.+++++|++.|+++++-||=
T Consensus       168 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~n--P--~-NPtG~~~s~~~l~~i~~~a~~~~~~vI~  227 (431)
T d1m7ya_         168 GFQITETALEEAYQEAEKRNLRVKGVLVTN--P--S-NPLGTTMTRNELYLLLSFVEDKGIHLIS  227 (431)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTCCEEEEEEES--S--C-TTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred             cccccHHHhhhhhhhhhhccCcceEEEecC--c--c-ccccccccccccccccccccccCcceee
Confidence            345789999999999988888766555432  2  1 2345789999999999999999998773

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=88.34  E-value=0.47  Score=34.85  Aligned_cols=54  Identities=28%  Similarity=0.348  Sum_probs=43.3

Q ss_pred             HHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348          30 LPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV   96 (131)
Q Consensus        30 i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~   96 (131)
                      |..-..+|+..+.|           +.  ..+++++++++.++|.+.|++++=|+-+...++.++..
T Consensus       116 I~ea~~~GADaiLL-----------I~--~~L~~~~l~~l~~~a~~lgle~LvEvh~~~El~~al~~  169 (251)
T d1i4na_         116 VKLASSVGADAILI-----------IA--RILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSV  169 (251)
T ss_dssp             HHHHHHTTCSEEEE-----------EG--GGSCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTT
T ss_pred             HHHHHhhccceEEe-----------ec--ccccHHHHHHHHHHHHHhCCeeecccCCHHHHHHHhcc
Confidence            34444566666555           22  47899999999999999999999999999999999853

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=87.74  E-value=1.8  Score=32.45  Aligned_cols=59  Identities=7%  Similarity=-0.001  Sum_probs=45.4

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEe
Q psy2348          18 GAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASI   81 (131)
Q Consensus        18 ~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevI   81 (131)
                      +--++++.+++.++.....+.+...+-+-.  |  . -+.|..||.+++++|++.|+++++-||
T Consensus       167 ~~~~d~~~~~~~~~~~~~~~~~~~~~~l~n--P--~-NPtG~~~s~~~~~~i~~~a~~~~~~vI  225 (428)
T d1iaya_         167 NFKITSKAVKEAYENAQKSNIKVKGLILTN--P--S-NPLGTTLDKDTLKSVLSFTNQHNIHLV  225 (428)
T ss_dssp             TTCCCHHHHHHHHHHHHHTTCCEEEEEEES--S--C-TTTCCCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             ccccccccccchhhhhhccCCCceEEEEcc--C--C-CcccccccccccchhheeeccCcEEEE
Confidence            445788889998888888877665554432  2  1 234579999999999999999999998

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=87.48  E-value=1.1  Score=32.15  Aligned_cols=102  Identities=8%  Similarity=0.025  Sum_probs=62.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcchHHHHhcc
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYSDMDFVLKV   96 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~GH~~~~L~~   96 (131)
                      =...+.++++++.+...|++++.+        -|.......+|.+|-+++++.+.+.   .+.||.-+....-.+.+=..
T Consensus        20 ~iD~~~~~~~i~~l~~~Gv~gl~~--------~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a   91 (292)
T d1xkya1          20 NIDFAKTTKLVNYLIDNGTTAIVV--------GGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLT   91 (292)
T ss_dssp             SBCHHHHHHHHHHHHHTTCCEEEE--------SSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHCCCCEEEE--------CeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHH
Confidence            367889999999999999999777        1212233478899988888777553   46777777666655554211


Q ss_pred             cccccccccC---CCCceecCCChhHHHHHHHHHhh
Q psy2348          97 KEFAKMRQNF---NDTRFICPNARSSLDLVFKMIGR  129 (131)
Q Consensus        97 p~~~~l~e~~---~~~~~lcp~~~~t~~f~~~ll~e  129 (131)
                      ....+++-+.   ..|.-+-+++++.+++.+++.+.
T Consensus        92 ~~a~~~Gad~ilv~pP~~~~~s~~~i~~~~~~v~~~  127 (292)
T d1xkya1          92 KKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAES  127 (292)
T ss_dssp             HHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHhcc
Confidence            1122222110   01222345667788888777664

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=86.70  E-value=0.94  Score=33.20  Aligned_cols=55  Identities=13%  Similarity=0.129  Sum_probs=45.3

Q ss_pred             HHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348          29 ILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV   96 (131)
Q Consensus        29 ~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~   96 (131)
                      +|..-..+|+..+.|           +.  ..++.++++++.++|.+.|++++-|+-+.-.++.+++.
T Consensus       122 QI~ear~~GADavLL-----------I~--~~L~~~~l~~l~~~a~~lgl~~LVEvh~~~El~~a~~~  176 (254)
T d1piia2         122 QIYLARYYQADACLL-----------ML--SVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIAL  176 (254)
T ss_dssp             HHHHHHHTTCSEEEE-----------ET--TTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHT
T ss_pred             HHHHHHhhccchhhh-----------hH--hhhcccHHHHHHHHHHHHhhhHHHhhccHHHHHHHHhh
Confidence            344455567776666           22  58999999999999999999999999999999999874

>d1r57a_ d.108.1.1 (A:) Hypothetical protein SA2309 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-acetyl transferase, NAT
domain: Hypothetical protein SA2309
species: Staphylococcus aureus [TaxId: 1280]

Probab=86.61  E-value=0.15  Score=32.09  Aligned_cols=42  Identities=12%  Similarity=0.157  Sum_probs=32.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcccccccc
Q psy2348          59 NPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKVKEFAKM  102 (131)
Q Consensus        59 ~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~p~~~~l  102 (131)
                      .-+-..=++.++++|+++|+.|||.-.--  ..++-|+|+|.++
T Consensus        50 ~Gig~~Lv~~~l~~Ar~~g~kvvp~c~y~--~~~~~k~pey~dv   91 (102)
T d1r57a_          50 QGVGKKLLKAVVEHARENNLKIIASCSFA--KHMLEKEDSYQDV   91 (102)
T ss_dssp             TCTHHHHHHHHHHHHHHHTCEEEESSHHH--HHHHHHCGGGTTT
T ss_pred             ccHHHHHHHHHHHHHHHCCCEEEEecHhH--HHHHHhCccHHHH
Confidence            46788899999999999999999986311  1233468999886

>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Escherichia coli [TaxId: 562]

Probab=86.34  E-value=1.4  Score=31.73  Aligned_cols=101  Identities=10%  Similarity=-0.024  Sum_probs=58.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcchHHHHhccc
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYSDMDFVLKVK   97 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~GH~~~~L~~p   97 (131)
                      ...+.++++++.+...|++++.+        -|.......+|.+|-+++++.+.+.   .+-||.-+-...--+.+-...
T Consensus        20 iD~~~l~~~i~~l~~~Gv~gi~~--------~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~   91 (295)
T d1hl2a_          20 LDKASLRRLVQFNIQQGIDGLYV--------GGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAA   91 (295)
T ss_dssp             BCHHHHHHHHHHHHHHTCSEEEE--------SSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEE--------CeEccchhhCCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHH
Confidence            67889999999999999999766        1211223368888888877766433   466666665555333332111


Q ss_pred             ccccccccC---CCCceecCCChhHHHHHHHHHhh
Q psy2348          98 EFAKMRQNF---NDTRFICPNARSSLDLVFKMIGR  129 (131)
Q Consensus        98 ~~~~l~e~~---~~~~~lcp~~~~t~~f~~~ll~e  129 (131)
                      ...+++-+.   ..+..+.+++++.+++.++++++
T Consensus        92 ~a~~~Gad~~~v~~p~~~~~~~~~~~~~~~~~~~~  126 (295)
T d1hl2a_          92 SAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDS  126 (295)
T ss_dssp             HHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCceeeeeeccccCCChHHHHHHHHHHhcc
Confidence            122222110   01122345667777777777654

>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=86.27  E-value=0.39  Score=37.78  Aligned_cols=68  Identities=10%  Similarity=0.142  Sum_probs=52.6

Q ss_pred             eEEeec--CCCCCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCC-C-CCCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348          11 LVHLDL--KGAPPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGF-D-NTNPFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus        11 g~mlD~--~~~~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~-~-~~~~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      -|||=+  -...-+.+.+++-++.|+..|+|++++..     |.|-+ + ..+.|.-+-.+++++.+++.|+.|++.
T Consensus        14 ~VmlPLd~v~~~~~~~~~~~~L~~LK~aGV~gV~vdV-----wWGivE~~~Pg~Ydws~yd~l~~mv~~~GLKi~vv   85 (417)
T d1vema2          14 YLMAPLKKIPEVTNWETFENDLRWAKQNGFYAITVDF-----WWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPI   85 (417)
T ss_dssp             EEECCSSCGGGTSCHHHHHHHHHHHHHTTEEEEEEEE-----EHHHHTCSSTTCCCCHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEeecccccccCCHHHHHHHHHHHHHcCCCEEEEee-----eeeeeecCCCCccCcHHHHHHHHHHHHcCCeEEEE
Confidence            456544  35567899999999999999999998854     23331 1 357899999999999999999887443

>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: 2-keto-3-deoxy gluconate aldolase Eda
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=85.36  E-value=3.6  Score=29.38  Aligned_cols=100  Identities=12%  Similarity=-0.057  Sum_probs=65.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc-ccc
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV-KEF   99 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~-p~~   99 (131)
                      ...+.+++++++|..-|++++.+        -|.......+|.+|-+++++.+.+....+||-|-..+ ++.++.. ...
T Consensus        17 iD~~~~~~~i~~l~~~Gv~gi~~--------~GttGE~~~Ls~~Er~~~~~~~~~~~~~~i~gv~~~s-t~~~i~~a~~a   87 (293)
T d1w3ia_          17 IDKEKLKIHAENLIRKGIDKLFV--------NGTTGLGPSLSPEEKLENLKAVYDVTNKIIFQVGGLN-LDDAIRLAKLS   87 (293)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEE--------SSTTTTGGGSCHHHHHHHHHHHHTTCSCEEEECCCSC-HHHHHHHHHHG
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEE--------CeechhhhhCCHHHHHHHHHHHHhhccccccccccch-hhhhhhhhhhh
Confidence            67889999999999999999765        1212233489999999999999999989999877765 3333321 112


Q ss_pred             ccccccC---CCCc-eecCCChhHHHHHHHHHhh
Q psy2348         100 AKMRQNF---NDTR-FICPNARSSLDLVFKMIGR  129 (131)
Q Consensus       100 ~~l~e~~---~~~~-~lcp~~~~t~~f~~~ll~e  129 (131)
                      ..++-+.   ..+. ...+++++.+++.+.+.+.
T Consensus        88 ~~~Ga~~~~~~~P~~~~~~~~~~i~~~f~~Ia~a  121 (293)
T d1w3ia_          88 KDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEV  121 (293)
T ss_dssp             GGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHH
T ss_pred             hhhccccccccccchhccchHHHHHHHHHHHHHh
Confidence            2222111   0111 2245566788888877654

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.12  E-value=0.87  Score=33.18  Aligned_cols=55  Identities=22%  Similarity=0.263  Sum_probs=45.2

Q ss_pred             HHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchHHHHhcc
Q psy2348          29 ILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDMDFVLKV   96 (131)
Q Consensus        29 ~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~~~~L~~   96 (131)
                      +|..-..+|+..+.|=.             ..++.+++++++++|.+.|++++-|+-+.-.++.++..
T Consensus       117 QI~ea~~~GADaiLLI~-------------~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~  171 (247)
T d1a53a_         117 QIDDAYNLGADTVLLIV-------------KILTERELESLLEYARSYGMEPLIEINDENDLDIALRI  171 (247)
T ss_dssp             HHHHHHHHTCSEEEEEG-------------GGSCHHHHHHHHHHHHTTTCCCEEEECSHHHHHHHHHT
T ss_pred             HHHHHHHhhcchhhhhh-------------hhccHHHHHHHHHHHHHHhhhHHhhcCCHHHHHHHHhC
Confidence            45555567777766622             47899999999999999999999999999999999874

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Putative cytoplasmic protein STM4435
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.91  E-value=0.77  Score=32.34  Aligned_cols=57  Identities=12%  Similarity=0.024  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      .+.++++++..+.+|+..+.+.     |.........--+.+-++++.++|+++||++.-|-
T Consensus        83 ~~~~~~~i~~a~~lG~~~v~~~-----~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~  139 (271)
T d2q02a1          83 VKKTEGLLRDAQGVGARALVLC-----PLNDGTIVPPEVTVEAIKRLSDLFARYDIQGLVEP  139 (271)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEC-----CCCSSBCCCHHHHHHHHHHHHHHHHTTTCEEEECC
T ss_pred             HHHHHHHHHHHHHcCCcEEEEe-----cCCCCccchHHHHHHHHHHHHHHhccCCeEEEEee
Confidence            5667788888888888877662     11110111112357888999999999999998763

>d1vffa1 c.1.8.4 (A:1-423) Beta-glucosidase A {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Beta-glucosidase A
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=84.89  E-value=0.63  Score=35.87  Aligned_cols=60  Identities=15%  Similarity=0.373  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHcCCCEEEE--EeeccCCCCCCCCCCCCCCHHHH---HHHHHHHHHcCCeEeeccCCcch
Q psy2348          24 TYLKEILPILAYTGATSLLI--EWEDTLPYSLGFDNTNPFRETEI---FIILAAAESNGLASIPLVPLYSD   89 (131)
Q Consensus        24 ~~lk~~i~~la~~g~n~~~l--~~ed~~p~~~~~~~~~~YT~eei---keiv~yA~~~~IevIP~i~~~GH   89 (131)
                      ...++=|++|+++|+|..++  .|..-+|      .+|.+.++-|   +++++-++++||+.+-.+-=+.+
T Consensus        50 ~ry~eDi~ll~~lG~~~yRfSisWsRI~P------~~g~~n~~gl~~Y~~~i~~l~~~gI~P~VTL~H~d~  114 (423)
T d1vffa1          50 ELYRDDIQLMTSLGYNAYRFSIEWSRLFP------EENKFNEDAFMKYREIIDLLLTRGITPLVTLHHFTS  114 (423)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCHHHHCS------BTTBCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred             HhhHHHHHHHHHhCCCEEEecCcHHHeec------CCCccChHHHHHHHHHHHHHHhcCCeeEEeecCCcc
Confidence            45567799999999999875  5556666      2467889988   99999999999999987643333

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.72  E-value=1.8  Score=30.98  Aligned_cols=65  Identities=11%  Similarity=0.036  Sum_probs=40.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcchHHHH
Q psy2348          21 PSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYSDMDFV   93 (131)
Q Consensus        21 ~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~GH~~~~   93 (131)
                      ...+.++++++.+...|++++.+-  .   -.|   ....+|.+|-+++++.+.+.   .+.||.-+-.....+.+
T Consensus        19 iD~~~~~~~i~~l~~~Gv~Gi~v~--G---stG---E~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai   86 (295)
T d1o5ka_          19 LDLESYERLVRYQLENGVNALIVL--G---TTG---ESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTL   86 (295)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEEES--S---GGG---TGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEC--e---ecc---chhhCCHHHHHHHhhhhccccccCCceEeecccccHHHHH
Confidence            567889999999999999997651  0   111   12256666666665554443   34555555555554444

>d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Sucrose phosphorylase
species: Bifidobacterium adolescentis [TaxId: 1680]

Probab=84.55  E-value=0.86  Score=32.47  Aligned_cols=61  Identities=8%  Similarity=-0.109  Sum_probs=41.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeeccCCC-----CCC------CCCCCCCCHHHHHHHHHHHHHcCCeEeeccCCcchH
Q psy2348          22 SLTYLKEILPILAYTGATSLLIEWEDTLPY-----SLG------FDNTNPFRETEIFIILAAAESNGLASIPLVPLYSDM   90 (131)
Q Consensus        22 ~~~~lk~~i~~la~~g~n~~~l~~ed~~p~-----~~~------~~~~~~YT~eeikeiv~yA~~~~IevIP~i~~~GH~   90 (131)
                      ++..|.+-+|.|..+|+|+|.|  -..|++     .|+      -.++.+=|.+|+|++     .|||.||=-+ ++.|+
T Consensus        18 dl~g~~~~Ldyl~~LGv~~I~L--~Pi~~~~~~~d~GY~~~Dy~~vdp~~Gt~~d~k~L-----~rGi~VIlDv-V~NHt   89 (434)
T d1r7aa2          18 TIKSMTDILRTRFDGVYDGVHI--LPFFTPFDGADAGFDPIDHTKVDERLGSWDDVAEL-----SKTHNIMVDA-IVNHM   89 (434)
T ss_dssp             SHHHHHHHHHHHSTTTCCEEEE--CCCEECSSSSSTTSSCSEEEEECTTTCCHHHHHHH-----HTTSEEEEEE-ECSEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEE--CCCCCCCCCCCCCcCcccccccCcccCCHHHHHHH-----HhCCeeeEEe-ccccc
Confidence            5778889999999999999876  222221     122      112333389999999     3799998655 46675

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=83.92  E-value=2.4  Score=30.33  Aligned_cols=102  Identities=7%  Similarity=0.006  Sum_probs=61.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHc---CCeEeeccCCcchHHHHhcc
Q psy2348          20 PPSLTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESN---GLASIPLVPLYSDMDFVLKV   96 (131)
Q Consensus        20 ~~~~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~---~IevIP~i~~~GH~~~~L~~   96 (131)
                      -...+.++++++.+...|++++.+        -|.......+|.+|-+++++.+.+.   .+.||.-+...+=.+.+-..
T Consensus        18 ~iD~~~~~~~i~~l~~~Gv~Gl~~--------~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~   89 (292)
T d2a6na1          18 NVCRASLKKLIDYHVASGTSAIVS--------VGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLT   89 (292)
T ss_dssp             SBCHHHHHHHHHHHHHHTCCEEEE--------SSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEE--------CeeccchhhCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHh
Confidence            467889999999999999999665        1211223368999988777655543   36677766655544444222


Q ss_pred             cccccccccC---CCCceecCCChhHHHHHHHHHhh
Q psy2348          97 KEFAKMRQNF---NDTRFICPNARSSLDLVFKMIGR  129 (131)
Q Consensus        97 p~~~~l~e~~---~~~~~lcp~~~~t~~f~~~ll~e  129 (131)
                      ....+++-+.   ..|.-.-+++++.+++.+.+.+.
T Consensus        90 ~~a~~~Gad~~~~~pP~~~~~~~~~i~~~f~~v~~~  125 (292)
T d2a6na1          90 QRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH  125 (292)
T ss_dssp             HTTTTSSCCEEEEECCCSSCCCHHHHHHHHHHHHHT
T ss_pred             ccHHhcCCcceeccCCCCCCCCHHHHHHHHHHHhhc
Confidence            2222332111   01222335677788888887664

>d2j78a1 c.1.8.4 (A:3-445) Beta-glucosidase A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Beta-glucosidase A
species: Thermotoga maritima [TaxId: 2336]

Probab=83.38  E-value=1.3  Score=34.00  Aligned_cols=66  Identities=15%  Similarity=0.165  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHcCCCEEEE--EeeccCCCCCCCCCCCCCCHHHHH---HHHHHHHHcCCeEeeccCCcchHHHHh
Q psy2348          24 TYLKEILPILAYTGATSLLI--EWEDTLPYSLGFDNTNPFRETEIF---IILAAAESNGLASIPLVPLYSDMDFVL   94 (131)
Q Consensus        24 ~~lk~~i~~la~~g~n~~~l--~~ed~~p~~~~~~~~~~YT~eeik---eiv~yA~~~~IevIP~i~~~GH~~~~L   94 (131)
                      +..++=|++|+++|+|..++  +|..-+|- |    .|.+.++.|.   ++++.++++||+.+.-+-=+.+=.++-
T Consensus        57 ~~y~eDi~l~~~lG~~~yRfsi~WsRi~P~-g----~g~~n~~~~~~Y~~~i~~l~~~GI~P~VTL~Hf~~P~wl~  127 (443)
T d2j78a1          57 NRWKEDIEIIEKLGVKAYRFSISWPRILPE-G----TGRVNQKGLDFYNRIIDTLLEKGITPFVTIYHWDLPFALQ  127 (443)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCHHHHSTT-S----SSCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBHHHH
T ss_pred             hhhHHHHHHHHHcCCCEEEccCCHHHceeC-C----CCCcCHHHHHHHHHHHHHHHHcCCeeeEeecCccchhhhh
Confidence            45678899999999998875  56666663 1    2578877776   999999999999998876666666543

>d1e4ia_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus polymyxa [TaxId: 1406]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Beta-glucosidase A
species: Bacillus polymyxa [TaxId: 1406]

Probab=82.82  E-value=1.3  Score=34.19  Aligned_cols=66  Identities=9%  Similarity=0.183  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHcCCCEEEE--EeeccCCCCCCCCCCCCCCHHHHH---HHHHHHHHcCCeEeeccCCcchHHHH
Q psy2348          23 LTYLKEILPILAYTGATSLLI--EWEDTLPYSLGFDNTNPFRETEIF---IILAAAESNGLASIPLVPLYSDMDFV   93 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l--~~ed~~p~~~~~~~~~~YT~eeik---eiv~yA~~~~IevIP~i~~~GH~~~~   93 (131)
                      -...++=|++|+.+|+|+.++  +|..-+|-.     .|...++-|.   ++++-++++||+.|-.+-=+++=.++
T Consensus        57 y~~y~eDi~l~~~lG~~~yRfSi~WsRI~P~g-----~g~~n~~gl~~Y~~~i~~l~~~gI~P~VTL~H~dlP~~l  127 (447)
T d1e4ia_          57 YHRYEEDIRLMKELGIRTYRFSVSWPRIFPNG-----DGEVNQKGLDYYHRVVDLLNDNGIEPFCTLYHWDLPQAL  127 (447)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCHHHHSTTS-----SSCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBHHH
T ss_pred             hHhhHHHHHHHHHhCCCEEEccCCHHHcccCC-----CCCcCHHHHHHHHHHHHHHHHhCCeEEEEeeccccchhh
Confidence            456788899999999999875  666666641     2577877776   99999999999998876555544443

>d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase Cel5a
species: Erwinia chrysanthemi [TaxId: 556]

Probab=82.32  E-value=1.1  Score=32.19  Aligned_cols=61  Identities=8%  Similarity=-0.109  Sum_probs=37.5

Q ss_pred             CCCCHHHHHHHHHHHH-HcCCCEEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEeeccC
Q psy2348          19 APPSLTYLKEILPILA-YTGATSLLIEWEDTLPYSLGFDNTNPFRETEIFIILAAAESNGLASIPLVP   85 (131)
Q Consensus        19 ~~~~~~~lk~~i~~la-~~g~n~~~l~~ed~~p~~~~~~~~~~YT~eeikeiv~yA~~~~IevIP~i~   85 (131)
                      ++.+.+.++.    |+ .+|+|.+++-+--. +..+.... .....+-++++|+.|.++||-||-.+-
T Consensus        37 ~~~~~~~~~~----l~~~~G~N~vR~~~~~~-~~~~~~~~-~~~~~~~ld~vv~~a~~~Giyvild~h   98 (291)
T d1egza_          37 KFYTADTVAS----LKKDWKSSIVRAAMGVQ-ESGGYLQD-PAGNKAKVERVVDAAIANDMYAIIGWH   98 (291)
T ss_dssp             GGCSHHHHHH----HHHTTCCCEEEEEEECS-STTSTTTC-HHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             cccCHHHHHH----HHHhcCCCEEEEecccc-ccCCcccC-cHHHHHHHHHHHHHHHHCCCeEeeeec
Confidence            3455555554    44 58999999865311 11111000 012357788999999999999986554

>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Vanillyl-alcohol oxidase
species: Fungus (Penicillium simplicissimum) [TaxId: 69488]

Probab=81.91  E-value=0.41  Score=34.79  Aligned_cols=25  Identities=16%  Similarity=0.247  Sum_probs=22.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCeEeecc
Q psy2348          60 PFRETEIFIILAAAESNGLASIPLV   84 (131)
Q Consensus        60 ~YT~eeikeiv~yA~~~~IevIP~i   84 (131)
                      +=|.+||.+++++|++++|.|+|-=
T Consensus        72 P~s~~eV~~iv~~a~~~~~~v~~~g   96 (268)
T d1e8ga2          72 PRNVADVQSIVGLANKFSFPLWPIS   96 (268)
T ss_dssp             CSSHHHHHHHHHHHHHHTCCEEEES
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEecc
Confidence            3499999999999999999999963

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.50  E-value=0.46  Score=33.99  Aligned_cols=34  Identities=18%  Similarity=0.345  Sum_probs=25.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCeE-------------eeccCCcchHHHH
Q psy2348          60 PFRETEIFIILAAAESNGLAS-------------IPLVPLYSDMDFV   93 (131)
Q Consensus        60 ~YT~eeikeiv~yA~~~~Iev-------------IP~i~~~GH~~~~   93 (131)
                      ...-+-+-+-..--++|||+|             |=.||+|||..++
T Consensus        52 ~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~iiDtPGH~df~   98 (239)
T d1f60a3          52 SFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFI   98 (239)
T ss_dssp             CCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEECCCCTTHH
T ss_pred             ccceeeecccchhhhcceeccccceeEeccCCEEEEEEECCCcHHHH
Confidence            333344445555568899999             8899999999997

>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein IolI
species: Bacillus subtilis [TaxId: 1423]

Probab=80.47  E-value=2.8  Score=29.22  Aligned_cols=58  Identities=12%  Similarity=-0.022  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEeeccCCCCCCCCC--CCCCCHHHHHHHHHHHHHcCCeEeec
Q psy2348          23 LTYLKEILPILAYTGATSLLIEWEDTLPYSLGFDN--TNPFRETEIFIILAAAESNGLASIPL   83 (131)
Q Consensus        23 ~~~lk~~i~~la~~g~n~~~l~~ed~~p~~~~~~~--~~~YT~eeikeiv~yA~~~~IevIP~   83 (131)
                      ++.+++.|+..+.+|+..+++..-..   ......  .-....+.++++.++|+++||.+.=|
T Consensus        83 ~~~~~~~i~~a~~lG~~~i~~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE  142 (278)
T d1i60a_          83 ITEFKGMMETCKTLGVKYVVAVPLVT---EQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALE  142 (278)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCBC---SSCCCHHHHHHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCccccccccC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCeeeee
Confidence            57788899999999999877643210   000000  00234466889999999999998754