Psyllid ID: psy2373

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MKTYLFPGQGSQYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVLDGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYKKDCVIKDDILEQSQEKKIEKWNNKYPIGTKVKVKGYKDILITKTKSMLLFENKAVIYIEGYNGYFLLDDVQPIQ
cEEEEcccccHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHccccHHHHcccccHHHHHHHHHHHHHHHHHHHccccccEEccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHcccHHHHHHHHHHcccccEEEEcccccccEEEEccHHHHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHHHHccccccccccEEEccccccccHHHHHHHHHHHccccccHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccEEEEEcccccccccccHHHHcccccEEEEEEcccEEEEcccccccc
cEEEEEcccccHcccHHHHHHHHcHHHHHHHHHHHcccHHHHHHHccHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHccccccEEEEEEccccEEEEEccHHHHHHHHHHHHHcccEEEEEEEEcccccHHHHHHHHHHHHHHHcccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHccccccHHHHHHHHHHHccccccccHHHHHcccccccccccHHHHcccccccccccccHHHcccccccccccccEEEcc
mktylfpgqgsqyvgmgqllfdkfpdIIEKSNNILGYSIKELCLKNsknqlnkteytqpaLYIVNALSYRDHIKNTGEYADFLVGHSLgeynalesagvfsfeDGLRLVQKRSKLMSQVLDGAMAAVIGINYKKILNILKennlntidiaNYNTLNQIIiagpkndinnAQIFfeknnaiyiplnvsgpfhsrymkpIYKKFNNFLLdfvfhspnipvisnfealpYSIEKITNNLsnhlinpvkwFDSIYYLLNKSknemefmeigpgTVLTKFIKSIKNEykkdcvikddILEQSQEKKIEKWnnkypigtkvkvkgYKDILITKTKSMLLFENKAVIYIEGYngyfllddvqpiq
mktylfpgqgsqyvGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVLDGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNeykkdcvikddileqsqekkiekwnnkypigtkvkvkgyKDILITKTKSMLLFENKAVIYIEGYNGYFLlddvqpiq
MKTYLFPGQGSQYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVLDGAMAAViginykkilnilkennlntiDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYKKDCVIKDDILEQSQEKKIEKWNNKYPIGTKVKVKGYKDILITKTKSMLLFENKAVIYIEGYNGYFLLDDVQPIQ
****LFPGQGSQYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVLDGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYKKDCVIKDDILEQSQEKKIEKWNNKYPIGTKVKVKGYKDILITKTKSMLLFENKAVIYIEGYNGYFLLDDV****
MKTYLFPGQGSQYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVLDGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYKKDCVIKDDILEQS****************KVKVKGYKDILITKTKSMLLFENKAVIYIEGYNGYFLLDDVQPI*
MKTYLFPGQGSQYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVLDGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYKKDCVIKDDILEQSQEKKIEKWNNKYPIGTKVKVKGYKDILITKTKSMLLFENKAVIYIEGYNGYFLLDDVQPIQ
MKTYLFPGQGSQYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVLDGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYKKDCVIKDDILEQSQEKKIEKWNNKYPIGTKVKVKGYKDILITKTKSMLLFENKAVIYIEGYNGYFLLDDVQPIQ
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKTYLFPGQGSQYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVLDGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYKKDCVIKDDILEQSQEKKIEKWNNKYPIGTKVKVKGYKDILITKTKSMLLFENKAVIYIEGYNGYFLLDDVQPIQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query358 2.2.26 [Sep-21-2011]
O34787 767 Polyketide biosynthesis p yes N/A 0.782 0.365 0.521 8e-81
A7Z4X8289 Polyketide biosynthesis m no N/A 0.782 0.968 0.514 5e-78
O34825288 Polyketide biosynthesis m no N/A 0.782 0.972 0.514 3e-76
A7Z4Y0 746 Polyketide biosynthesis p no N/A 0.798 0.383 0.488 5e-76
Q93QD4308 Malonyl CoA-acyl carrier yes N/A 0.759 0.883 0.368 8e-43
Q5HGK3308 Malonyl CoA-acyl carrier yes N/A 0.759 0.883 0.368 8e-43
Q6GHK5308 Malonyl CoA-acyl carrier yes N/A 0.759 0.883 0.365 2e-42
Q7A124308 Malonyl CoA-acyl carrier yes N/A 0.759 0.883 0.365 3e-42
Q7A5Z3308 Malonyl CoA-acyl carrier yes N/A 0.759 0.883 0.365 3e-42
Q99UN8308 Malonyl CoA-acyl carrier yes N/A 0.759 0.883 0.365 3e-42
>sp|O34787|PKSE_BACSU Polyketide biosynthesis protein PksE OS=Bacillus subtilis (strain 168) GN=pksE PE=1 SV=3 Back     alignment and function desciption
 Score =  300 bits (769), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 148/284 (52%), Positives = 196/284 (69%), Gaps = 4/284 (1%)

Query: 1   MKTYLFPGQGSQYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
           M TY+FPGQGSQ  GMGQ LF+++  + ++++ ILGYSI++LC + S   +N TEYTQPA
Sbjct: 1   MITYVFPGQGSQQKGMGQGLFEQYQHLTDQADQILGYSIEKLCTEKSYLDVNHTEYTQPA 60

Query: 61  LYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVL 120
           LY+VNALSY   ++ TG   DF  GHSLGEYNAL +AG F FE GLRLV+KR +LM ++ 
Sbjct: 61  LYVVNALSYLKRVEETGRKPDFAAGHSLGEYNALMAAGAFDFETGLRLVKKRGELMGRIT 120

Query: 121 DGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFE--KNN 178
            G MAAVIG++ +++  +L+E+ L  ID+AN NT  QI+I+GPK +I  A+  FE  K+ 
Sbjct: 121 GGGMAAVIGLSKEQVTAVLEEHRLYDIDVANENTPQQIVISGPKKEIEKARAVFENTKDV 180

Query: 179 AIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSN 238
            ++ PLNVSG FHSRYM    + F  ++  F F    IPVISN  A PY  +++ + LS 
Sbjct: 181 KLFHPLNVSGAFHSRYMNEAKQVFKQYIDSFQFAPLAIPVISNVYAEPYHQDRLKDTLSE 240

Query: 239 HLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNE 282
            + N VKW DSI +L+   + EMEF EIGPGTVLT  I  IKNE
Sbjct: 241 QMDNTVKWTDSIRFLMG--RGEMEFAEIGPGTVLTGLIHRIKNE 282
Probably involved in some intermediate steps for the synthesis of the antibiotic polyketide bacillaene which is involved in secondary metabolism. Probably has an acyl transferase activity and could also have a flavin mononucleotide-dependent oxidoreductase activity.
Bacillus subtilis (strain 168) (taxid: 224308)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 3EC: 9
>sp|A7Z4X8|BAEC_BACA2 Polyketide biosynthesis malonyl CoA-acyl carrier protein transacylase BaeC OS=Bacillus amyloliquefaciens (strain FZB42) GN=baeC PE=1 SV=1 Back     alignment and function description
>sp|O34825|PKSC_BACSU Polyketide biosynthesis malonyl CoA-acyl carrier protein transacylase PksC OS=Bacillus subtilis (strain 168) GN=pksC PE=1 SV=1 Back     alignment and function description
>sp|A7Z4Y0|BAEE_BACA2 Polyketide biosynthesis protein BaeE OS=Bacillus amyloliquefaciens (strain FZB42) GN=baeE PE=1 SV=1 Back     alignment and function description
>sp|Q93QD4|FABD_STAAU Malonyl CoA-acyl carrier protein transacylase OS=Staphylococcus aureus GN=fabD PE=3 SV=1 Back     alignment and function description
>sp|Q5HGK3|FABD_STAAC Malonyl CoA-acyl carrier protein transacylase OS=Staphylococcus aureus (strain COL) GN=fabD PE=3 SV=1 Back     alignment and function description
>sp|Q6GHK5|FABD_STAAR Malonyl CoA-acyl carrier protein transacylase OS=Staphylococcus aureus (strain MRSA252) GN=fabD PE=3 SV=1 Back     alignment and function description
>sp|Q7A124|FABD_STAAW Malonyl CoA-acyl carrier protein transacylase OS=Staphylococcus aureus (strain MW2) GN=fabD PE=3 SV=1 Back     alignment and function description
>sp|Q7A5Z3|FABD_STAAN Malonyl CoA-acyl carrier protein transacylase OS=Staphylococcus aureus (strain N315) GN=fabD PE=1 SV=1 Back     alignment and function description
>sp|Q99UN8|FABD_STAAM Malonyl CoA-acyl carrier protein transacylase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=fabD PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query358
44662945349 putative acyltransferase [symbiont bacte 0.944 0.968 0.511 1e-103
163756764372 malonyl CoA-acyl carrier protein transac 0.986 0.948 0.493 5e-98
148265125410 malonyl CoA-acyl carrier protein transac 0.991 0.865 0.456 1e-97
441497531393 Malonyl CoA-acyl carrier protein transac 0.991 0.903 0.469 3e-96
441501392415 Malonyl CoA-acyl carrier protein transac 0.986 0.850 0.459 2e-95
392547094358 malonyl CoA-acyl carrier protein transac 0.991 0.991 0.455 1e-91
392308548364 malonyl CoA-acyl carrier protein transac 0.991 0.975 0.467 2e-91
451817247362 polyketide biosynthesis protein BaeE [Cl 0.991 0.980 0.472 6e-90
281415844442 acyl transferase [Nostoc sp. 'Peltigera 0.974 0.789 0.435 2e-89
126444543437 malonyl CoA-acyl carrier protein transac 0.994 0.814 0.389 4e-88
>gi|44662945|gb|AAS47563.1| putative acyltransferase [symbiont bacterium of Paederus fuscipes] Back     alignment and taxonomy information
 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/342 (51%), Positives = 239/342 (69%), Gaps = 4/342 (1%)

Query: 16  MGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPALYIVNALSYRDHIKN 75
           MG+ LFD+FP+IIE +N+ILGYSIK LCL++ + QL  T+YTQ ALY+VNAL+YR H++ 
Sbjct: 1   MGEQLFDRFPNIIEAANDILGYSIKTLCLEDPQRQLRLTQYTQVALYVVNALTYRQHLQQ 60

Query: 76  TGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVLDGAMAAVIGINYKKI 135
            G   DF+ GHSLGEYNALESAGVFSFEDGLRLVQKR  LMSQ   GAMAA++GI+   +
Sbjct: 61  GGGLPDFVAGHSLGEYNALESAGVFSFEDGLRLVQKRGDLMSQAPRGAMAAILGISADSV 120

Query: 136 LNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAIYIPLNVSGPFHSRYM 195
             IL E  L  IDIANYN   Q II+G + DI +AQ  FE   A+Y+PLN SG FHSRYM
Sbjct: 121 AGILAEQGLTRIDIANYNAPTQTIISGLEADIRDAQAVFESCQAMYVPLNTSGAFHSRYM 180

Query: 196 KPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHLINPVKWFDSIYYLLN 255
           +    +F  FL  F F  P IPV++N  A PY   ++   L++ L   V+W DS+ +LL+
Sbjct: 181 QSARDEFAQFLEAFEFRDPQIPVVANVTAKPYVGTEVVRTLADQLTGSVRWLDSMRFLLD 240

Query: 256 KSKNEMEFMEIGPGTVLTKFIKSIKNEYKKDCVIKDDILEQSQEKKIEKWNNKYPIGTKV 315
           +     EF E+GPG VL+K ++SI++      V   +   ++ ++ +++WN   PIG++V
Sbjct: 241 QGVT--EFRELGPGDVLSKLVESIRSSAMSKPV--SEFAAENSQQLVDEWNRTCPIGSRV 296

Query: 316 KVKGYKDILITKTKSMLLFENKAVIYIEGYNGYFLLDDVQPI 357
           +VKGY DIL+TK++++LLF ++A IY+E Y GYF L +V+P+
Sbjct: 297 RVKGYDDILVTKSRAVLLFGHRAAIYMENYQGYFALSEVEPL 338

Source: symbiont bacterium of Paederus fuscipes

Species: symbiont bacterium of Paederus fuscipes

Genus:

Family:

Order:

Class:

Phylum:

Superkingdom: Bacteria
>gi|163756764|ref|ZP_02163874.1| malonyl CoA-acyl carrier protein transacylase [Kordia algicida OT-1] gi|161323281|gb|EDP94620.1| malonyl CoA-acyl carrier protein transacylase [Kordia algicida OT-1] Back     alignment and taxonomy information
>gi|148265125|ref|YP_001231831.1| malonyl CoA-acyl carrier protein transacylase [Geobacter uraniireducens Rf4] gi|146398625|gb|ABQ27258.1| malonyl CoA-acyl carrier protein transacylase [Geobacter uraniireducens Rf4] Back     alignment and taxonomy information
>gi|441497531|ref|ZP_20979744.1| Malonyl CoA-acyl carrier protein transacylase [Fulvivirga imtechensis AK7] gi|441438741|gb|ELR72072.1| Malonyl CoA-acyl carrier protein transacylase [Fulvivirga imtechensis AK7] Back     alignment and taxonomy information
>gi|441501392|ref|ZP_20983506.1| Malonyl CoA-acyl carrier protein transacylase [Fulvivirga imtechensis AK7] gi|441434842|gb|ELR68272.1| Malonyl CoA-acyl carrier protein transacylase [Fulvivirga imtechensis AK7] Back     alignment and taxonomy information
>gi|392547094|ref|ZP_10294231.1| malonyl CoA-acyl carrier protein transacylase [Pseudoalteromonas rubra ATCC 29570] Back     alignment and taxonomy information
>gi|392308548|ref|ZP_10271082.1| malonyl CoA-acyl carrier protein transacylase [Pseudoalteromonas citrea NCIMB 1889] Back     alignment and taxonomy information
>gi|451817247|ref|YP_007453448.1| polyketide biosynthesis protein BaeE [Clostridium saccharoperbutylacetonicum N1-4(HMT)] gi|451783226|gb|AGF54194.1| polyketide biosynthesis protein BaeE [Clostridium saccharoperbutylacetonicum N1-4(HMT)] Back     alignment and taxonomy information
>gi|281415844|gb|ADA69247.1| acyl transferase [Nostoc sp. 'Peltigera membranacea cyanobiont'] Back     alignment and taxonomy information
>gi|126444543|ref|YP_001062471.1| malonyl CoA-acyl carrier protein transacylase [Burkholderia pseudomallei 668] gi|126224034|gb|ABN87539.1| [acyl-carrier-protein] S-malonyltransferase [Burkholderia pseudomallei 668] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query358
TIGR_CMR|BA_3990314 BA_3990 "malonyl CoA-acyl carr 0.812 0.926 0.358 4.6e-41
TIGR_CMR|CHY_1448312 CHY_1448 "malonyl CoA-acyl car 0.759 0.871 0.374 1.5e-37
TIGR_CMR|GSU_1602307 GSU_1602 "malonyl CoA-acyl car 0.779 0.908 0.355 2.4e-37
UNIPROTKB|P0AAI9309 fabD "malonyl-CoA-ACP transacy 0.765 0.886 0.336 3.2e-33
TIGR_CMR|DET_1276310 DET_1276 "malonyl CoA-acyl car 0.765 0.883 0.332 4.7e-32
TIGR_CMR|APH_0092319 APH_0092 "malonyl CoA-acyl car 0.840 0.943 0.295 3.3e-31
TIGR_CMR|SO_2777308 SO_2777 "malonyl CoA-acyl carr 0.790 0.918 0.316 3.3e-31
TAIR|locus:2060884393 EMB3147 "EMBRYO DEFECTIVE 3147 0.765 0.697 0.310 6.9e-31
UNIPROTKB|Q9KQH6312 VC_2022 "Malonyl CoA-acyl carr 0.762 0.875 0.320 2.3e-30
TIGR_CMR|VC_2022312 VC_2022 "malonyl CoA-acyl carr 0.762 0.875 0.320 2.3e-30
TIGR_CMR|BA_3990 BA_3990 "malonyl CoA-acyl carrier protein transacylase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 109/304 (35%), Positives = 163/304 (53%)

Query:     4 YLFPGQGSQYVGMGQLLFD---KFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
             +LFPGQGSQ VGMG+ L +   +  ++  K++ +L  S+ E+  + S+ +L  T   QPA
Sbjct:     6 FLFPGQGSQAVGMGKQLAENNKEVANVFAKADEVLQDSLSEVIFEGSQEKLTLTTNAQPA 65

Query:    61 LYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVL 120
             L +  + +    +K      DF+ GHSLGEY+AL +AG  +FED +  V+KR + M + +
Sbjct:    66 L-LTTSFAILTALKEYDITPDFVAGHSLGEYSALVAAGALTFEDAVYAVRKRGEYMEEAV 124

Query:   121 ---DGAMAAVXXXX--XXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFFE 175
                +GAMAA+                       IAN N+  QI+I+G K  +  A    +
Sbjct:   125 PGGEGAMAAILGADPHMLKRVTEEVTGEGYAVQIANMNSTKQIVISGTKQGVEIASQRAK 184

Query:   176 KNNAIY-IPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEA-LPYSIEKIT 233
             +N A   IPL VSGPFHS  MKP  +KF + L +      NIPVI+N  A +  S   I 
Sbjct:   185 ENGAKRAIPLKVSGPFHSALMKPAAEKFQSVLNEITIQDTNIPVIANVTADVITSGAHIQ 244

Query:   234 NNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYKKDCVIKDDI 293
               L   L +PV W+ SI Y++N+  +   F+EIGPG VL   +KSI +  K   +  ++ 
Sbjct:   245 EKLIEQLYSPVLWYPSIEYMVNQGVDT--FIEIGPGKVLAGLMKSIDSSVKAYAIYDEET 302

Query:   294 LEQS 297
             L+ +
Sbjct:   303 LKDT 306
GO:0004314 "[acyl-carrier-protein
GO:0006633 "fatty acid biosynthetic process" evidence=ISS
TIGR_CMR|CHY_1448 CHY_1448 "malonyl CoA-acyl carrier protein transacylase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1602 GSU_1602 "malonyl CoA-acyl carrier protein transacylase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P0AAI9 fabD "malonyl-CoA-ACP transacylase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1276 DET_1276 "malonyl CoA-acyl carrier protein transacylase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0092 APH_0092 "malonyl CoA-acyl carrier protein transacylase" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2777 SO_2777 "malonyl CoA-acyl carrier protein transacylase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TAIR|locus:2060884 EMB3147 "EMBRYO DEFECTIVE 3147" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQH6 VC_2022 "Malonyl CoA-acyl carrier protein transacylase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2022 VC_2022 "malonyl CoA-acyl carrier protein transacylase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q93QD4FABD_STAAU2, ., 3, ., 1, ., 3, 90.36860.75970.8831yesN/A
Q8T3L6FABD_DROME2, ., 3, ., 1, ., 3, 90.30030.74860.7071yesN/A
Q6GHK5FABD_STAAR2, ., 3, ., 1, ., 3, 90.36510.75970.8831yesN/A
Q5HGK3FABD_STAAC2, ., 3, ., 1, ., 3, 90.36860.75970.8831yesN/A
P0AAJ0FABD_ECOL62, ., 3, ., 1, ., 3, 90.34260.76810.8899yesN/A
Q6G9Y3FABD_STAAS2, ., 3, ., 1, ., 3, 90.36510.75970.8831yesN/A
O34787PKSE_BACSU2, ., 3, ., 1, ., 3, 90.52110.78210.3650yesN/A
O85140FABD_SALTY2, ., 3, ., 1, ., 3, 90.32860.76810.8899yesN/A
Q7A124FABD_STAAW2, ., 3, ., 1, ., 3, 90.36510.75970.8831yesN/A
Q8K9J6FABD_BUCAP2, ., 3, ., 1, ., 3, 90.32970.75690.8741yesN/A
Q7A5Z3FABD_STAAN2, ., 3, ., 1, ., 3, 90.36510.75970.8831yesN/A
Q99UN8FABD_STAAM2, ., 3, ., 1, ., 3, 90.36510.75970.8831yesN/A
P43712FABD_HAEIN2, ., 3, ., 1, ., 3, 90.33100.77650.8910yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.10.921
3rd Layer2.3.1.390.914

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query358
TIGR00128290 TIGR00128, fabD, malonyl CoA-acyl carrier protein 1e-104
COG0331310 COG0331, FabD, (acyl-carrier-protein) S-malonyltra 7e-96
smart00827298 smart00827, PKS_AT, Acyl transferase domain in pol 4e-57
PLN02752343 PLN02752, PLN02752, [acyl-carrier protein] S-malon 1e-55
TIGR03131295 TIGR03131, malonate_mdcH, malonate decarboxylase, 8e-41
COG3321 1061 COG3321, COG3321, Polyketide synthase modules and 8e-34
TIGR02813 2582 TIGR02813, omega_3_PfaA, polyketide-type polyunsat 2e-31
pfam00698319 pfam00698, Acyl_transf_1, Acyl transferase domain 5e-30
>gnl|CDD|232839 TIGR00128, fabD, malonyl CoA-acyl carrier protein transacylase Back     alignment and domain information 
 Score =  307 bits (788), Expect = e-104
 Identities = 128/290 (44%), Positives = 186/290 (64%), Gaps = 10/290 (3%)

Query: 1   MKTYLFPGQGSQYVGMGQLLFDKFPDIIEK---SNNILGYSIKELCLKNSKNQLNKTEYT 57
              Y+FPGQGSQ VGMG+ L++++P   E    ++  LGY +K+LC +    +LNKT+YT
Sbjct: 2   KIAYVFPGQGSQTVGMGKDLYEQYPIAKELFDQASEALGYDLKKLCQEGPAEELNKTQYT 61

Query: 58  QPALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMS 117
           QPALY+V+A+ Y    +  G   DF  GHSLGEY+AL +AG   FE  L+LV+KR +LM 
Sbjct: 62  QPALYVVSAILYLKLKEQGGLKPDFAAGHSLGEYSALVAAGALDFETALKLVKKRGELMQ 121

Query: 118 QVL---DGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFF 174
           + +    GAMAAVIG++ +++    +E   N +D+AN+N+  Q++I+G K+ +  A   F
Sbjct: 122 EAVPEGGGAMAAVIGLDEEQLAQACEEATENDVDLANFNSPGQVVISGTKDGVEAAAALF 181

Query: 175 EKNNA-IYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYS-IEKI 232
           ++  A   +PL VSG FHSR+MKP  +KF   L    F+ P +PVISN +A PY+  ++I
Sbjct: 182 KEMGAKRAVPLEVSGAFHSRFMKPAAEKFAETLEACQFNDPTVPVISNVDAKPYTNGDRI 241

Query: 233 TNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNE 282
              LS  L +PV+W DS+  L+  ++   EF E+GPG VLT  IK IKN+
Sbjct: 242 KEKLSEQLTSPVRWTDSVEKLM--ARGVTEFAEVGPGKVLTGLIKRIKND 289

This enzyme of fatty acid biosynthesis transfers the malonyl moeity from coenzyme A to acyl-carrier protein. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 290
>gnl|CDD|223408 COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|214838 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase (PKS) enzymes Back     alignment and domain information
>gnl|CDD|215401 PLN02752, PLN02752, [acyl-carrier protein] S-malonyltransferase Back     alignment and domain information
>gnl|CDD|132175 TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit Back     alignment and domain information
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA Back     alignment and domain information
>gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 358
PF00698318 Acyl_transf_1: Acyl transferase domain; InterPro: 100.0
TIGR00128290 fabD malonyl CoA-acyl carrier protein transacylase 100.0
COG0331310 FabD (acyl-carrier-protein) S-malonyltransferase [ 100.0
PLN02752343 [acyl-carrier protein] S-malonyltransferase 100.0
TIGR03131295 malonate_mdcH malonate decarboxylase, epsilon subu 100.0
smart00827298 PKS_AT Acyl transferase domain in polyketide synth 100.0
TIGR02816538 pfaB_fam PfaB family protein. The protein PfaB is 100.0
TIGR02813 2582 omega_3_PfaA polyketide-type polyunsaturated fatty 100.0
KOG2926|consensus386 100.0
COG3321 1061 Polyketide synthase modules and related proteins [ 100.0
KOG1202|consensus 2376 100.0
cd07198172 Patatin Patatin-like phospholipase. Patatin is a s 93.06
cd07205175 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholi 91.13
cd07207194 Pat_ExoU_VipD_like ExoU and VipD-like proteins; ho 90.7
COG1752306 RssA Predicted esterase of the alpha-beta hydrolas 90.56
cd07210221 Pat_hypo_W_succinogenes_WS1459_like Hypothetical p 90.21
cd07227269 Pat_Fungal_NTE1 Fungal patatin-like phospholipase 89.37
cd07209215 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin sim 89.24
cd07225306 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domai 89.19
cd07229391 Pat_TGL3_like Triacylglycerol lipase 3. Triacylgly 88.41
cd07228175 Pat_NTE_like_bacteria Bacterial patatin-like phosp 87.9
cd07224233 Pat_like Patatin-like phospholipase. Patatin-like 86.32
PRK10279300 hypothetical protein; Provisional 86.13
cd07218245 Pat_iPLA2 Calcium-independent phospholipase A2; Cl 84.64
cd07204243 Pat_PNPLA_like Patatin-like phospholipase domain c 82.7
cd07231323 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar 82.43
cd07220249 Pat_PNPLA2 Patatin-like phospholipase domain conta 81.76
cd07232407 Pat_PLPL Patain-like phospholipase. Patatin-like p 80.52
cd07230421 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TG 80.32
cd07221252 Pat_PNPLA3 Patatin-like phospholipase domain conta 80.26
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2 Back     alignment and domain information 
Probab=100.00  E-value=7.4e-59  Score=437.76  Aligned_cols=271  Identities=37%  Similarity=0.607  Sum_probs=241.2

Q ss_pred             EEEecCCCcchHHHHHHHHhhcHHHHHH---HHHH----hCCCHHHHhccccc-ccccCCchhHHHHHHHHHHHHHHHHH
Q psy2373           3 TYLFPGQGSQYVGMGQLLFDKFPDIIEK---SNNI----LGYSIKELCLKNSK-NQLNKTEYTQPALYIVNALSYRDHIK   74 (358)
Q Consensus         3 ~fvF~Gqg~~~~~~~~~L~~~~~~~~~~---~~~~----lg~~l~~~~~~~~~-~~~~~~~~~~~~l~~~q~~a~~~~l~   74 (358)
                      +|+|||||+||+|||++||+.+|.|.+.   |+++    +|+++.+++..++. ..+.++.++||++|++| ++++++|+
T Consensus         1 vFlFpGQGsq~~gMg~~L~~~~p~f~~~~~~~~~~l~~~~g~~l~~~l~~~~~~~~l~~~~~~qpai~~~~-~al~~~l~   79 (318)
T PF00698_consen    1 VFLFPGQGSQYPGMGRDLYENNPVFRETIDRCDEILKELLGFSLLELLFEGPESEDLNDTEYAQPAIFAIQ-VALARLLR   79 (318)
T ss_dssp             EEEE--TTS--TTTTHHHHHH-HHHHHHHHHHHHHHTSHHTS-HHHHHHHTTHCHHHTSHHHHHHHHHHHH-HHHHHHHH
T ss_pred             cEEECCcchhhHhHHHHHHHcChhhHHHHHhhhhhhhcccccchhhhhhcccccccccchheecchhhhhh-hhhhhhhc
Confidence            6999999999999999999997766554   5544    48999988887664 67889999999999999 89999999


Q ss_pred             HhCCCcCEEeecChHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcC-CCCceEEEcCCCHHHHHHHHHhcCCCceEEeccc
Q psy2373          75 NTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQV-LDGAMAAVIGINYKKILNILKENNLNTIDIANYN  153 (358)
Q Consensus        75 ~~Gv~P~~v~GhS~GE~aAa~~aG~ls~~da~~l~~~r~~~~~~~-~~g~m~aV~~~~~~~~~~~l~~~~~~~v~ia~~n  153 (358)
                      ++|++|++++|||+||++|+++||++|++|+++++..|+++|.+. ..|.|++|..   ++.+..+..  .++++||++|
T Consensus        80 ~~Gi~P~~v~GhSlGE~aA~~aaG~ls~e~a~~lv~~R~~~m~~~~~~g~m~av~~---~~~~~~~~~--~~~v~ia~~N  154 (318)
T PF00698_consen   80 SWGIKPDAVIGHSLGEYAALVAAGALSLEDALRLVYERARLMDEAAPPGAMLAVRG---EEEEEKLAL--PPDVEIANIN  154 (318)
T ss_dssp             HTTHCESEEEESTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHSTSEEEEEEES---HHHHHHHHT--TTTEEEEEEE
T ss_pred             ccccccceeeccchhhHHHHHHCCccchhhhhhhHHHHHHHHHHhhhcccccchhh---hHHhhhccc--cccceeeeec
Confidence            999999999999999999999999999999999999999999875 5689999954   333334332  2789999999


Q ss_pred             CCCcEEEEcchhhHHHHHHHHHhCCcEEEEccCCCCCccccchHHHHHHHHHhccCCCCCCCccEEeCCCCcccChh-HH
Q psy2373         154 TLNQIIIAGPKNDINNAQIFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIE-KI  232 (358)
Q Consensus       154 sp~~~visG~~~~l~~l~~~l~~~g~~~~~L~v~~~fHs~~~~~~~~~~~~~l~~~~~~~p~ip~~S~~~g~~~~~~-~~  232 (358)
                      +|+++||||+.++++++.+.+++.|+.++.|++++|||||+|+++.+++.+.+..+.+++|++|+||+++|+.++++ ..
T Consensus       155 s~~q~visG~~~~l~~~~~~l~~~~~~~~~l~v~~afHs~~m~~~~~~~~~~l~~~~~~~p~ip~~S~~~g~~~~~~~~~  234 (318)
T PF00698_consen  155 SPRQVVISGEREALEALVERLKAEGIKAKRLPVSYAFHSPLMEPAADEFREALESIEFRPPKIPVYSNVTGRPYDDPELI  234 (318)
T ss_dssp             ETTEEEEEEEHHHHHHHHHHHHHTTSEEEEESSSSETTSGGGHHHHHHHHHHHHTSCSCCCSSEEEETTTSSBEHSHHHH
T ss_pred             cccccccCCCHHHHHHHHHHhhccceeEEEeeeeccccCchhhhhHHHHHhhhhccccccccccceeecccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988554 44


Q ss_pred             HHHHHHhcCCcccHHHHHHHHHhcCCCCcEEEEECCchHHHHHHHHHHh
Q psy2373         233 TNNLSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKN  281 (358)
Q Consensus       233 ~~~~~~~~~~pv~f~~~v~~~~~~~~g~~~~veiGP~~~l~~~~~~~l~  281 (358)
                      .+||.+|+++||+|.++++++.++  |.++||||||+++|+.+++++++
T Consensus       235 ~~~~~~~l~~pV~f~~~v~~l~~~--g~~~fiEiGP~~~L~~~~~~~l~  281 (318)
T PF00698_consen  235 AEYWARQLRSPVRFREAVEALYED--GVRVFIEIGPGSVLTSLVKRILK  281 (318)
T ss_dssp             HHHHHHHHHSHEEHHHHHHHHHHT--TEEEEEEESSSSHHHHHHHHHST
T ss_pred             hhHHHhccCCcCChHHHHHHHHhc--CCCEEEEeCchHHHHHHHHHHHh
Confidence            689999999999999999999988  99999999999999999999998

3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase Back     alignment and domain information
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism] Back     alignment and domain information
>PLN02752 [acyl-carrier protein] S-malonyltransferase Back     alignment and domain information
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit Back     alignment and domain information
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes Back     alignment and domain information
>TIGR02816 pfaB_fam PfaB family protein Back     alignment and domain information
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA Back     alignment and domain information
>KOG2926|consensus Back     alignment and domain information
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG1202|consensus Back     alignment and domain information
>cd07198 Patatin Patatin-like phospholipase Back     alignment and domain information
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1 Back     alignment and domain information
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2 Back     alignment and domain information
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes Back     alignment and domain information
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli Back     alignment and domain information
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7 Back     alignment and domain information
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3 Back     alignment and domain information
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>cd07224 Pat_like Patatin-like phospholipase Back     alignment and domain information
>PRK10279 hypothetical protein; Provisional Back     alignment and domain information
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2 Back     alignment and domain information
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family Back     alignment and domain information
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase Back     alignment and domain information
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2 Back     alignment and domain information
>cd07232 Pat_PLPL Patain-like phospholipase Back     alignment and domain information
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5 Back     alignment and domain information
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query358
3g87_A394 Crystal Structure Of Malonyl Coa-Acyl Carrier Prote 1e-85
3sbm_A281 Trans-Acting Transferase From Disorazole Synthase I 9e-67
3rgi_A286 Trans-Acting Transferase From Disorazole Synthase L 9e-67
3im8_A307 Crystal Structure Of Mcat From Streptococcus Pneumo 9e-41
3im9_A316 Crystal Structure Of Mcat From Staphylococcus Aureu 1e-37
2g1h_A308 Structure Of E.Coli Fabd Complexed With Glycerol Le 6e-37
1mla_A309 The Escherichia Coli Malonyl-Coa:acyl Carrier Prote 6e-37
3ptw_A336 Crystal Structure Of Malonyl Coa-Acyl Carrier Prote 2e-35
3k89_A314 Structure Of X. Oryzae Pv. Oryzae Kacc10331, Xoo088 3e-35
3ezo_A318 Crystal Structure Of Acyl-Carrier-Protein S- Malony 6e-35
2cuy_A305 Crystal Structure Of Malonyl Coa-acyl Carrier Prote 5e-33
3h0p_A312 2.0 Angstrom Crystal Structure Of An Acyl Carrier P 6e-32
3qat_A318 Crystal Structure Of Acyl-Carrier-Protein-S-Malonyl 7e-32
3hjv_A312 1.7 Angstrom Resolution Crystal Structure Of An Acy 4e-31
3tqe_A316 Structure Of The Malonyl Coa-Acyl Carrier Protein T 1e-26
2h1y_A321 Crystal Structure Of Malonyl-Coa:acyl Carrier Prote 2e-23
2c2n_A339 Structure Of Human Mitochondrial Malonyltransferase 1e-22
2cdh_4305 Architecture Of The Thermomyces Lanuginosus Fungal 2e-16
2cf2_B304 Architecture Of Mammalian Fatty Acid Synthase Lengt 2e-16
1nm2_A317 "malonyl-Coa:acp Transacylase" Length = 317 5e-15
2hg4_A917 Structure Of The Ketosynthase-acyltransferase Didom 5e-12
4amn_A421 Crystal Structure Of The Acyltransferase Domain Of 4e-11
4amm_A401 Crystal Structure Of The Acyltransferase Domain Of 4e-11
4amo_A421 Crystal Structure Of The Acyltransferase Domain Of 6e-11
2qo3_A915 Crystal Structure Of [ks3][at3] Didomain From Modul 7e-11
2qc3_A303 Crystal Structure Of Mcat From Mycobacterium Tuberc 5e-09
2qj3_A322 Mycobacterium Tuberculosis Fabd Length = 322 6e-09
2jfd_A425 Structure Of The Mat Domain Of Human Fas Length = 4 2e-07
3hhd_A 965 Structure Of The Human Fatty Acid Synthase Ks-Mat D 2e-07
2jfk_A433 Structure Of The Mat Domain Of Human Fas With Malon 2e-07
2vz8_A 2512 Crystal Structure Of Mammalian Fatty Acid Synthase 2e-04
2vkz_G2051 Structure Of The Cerulenin-Inhibited Fungal Fatty A 3e-04
3zen_D 3089 Cryo-em Structure Of The Mycobacterial Fatty Acid S 3e-04
2pff_B2006 Structural Insights Of Yeast Fatty Acid Synthase Le 4e-04
>pdb|3G87|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein Transacylase From Burkholderia Pseudomallei Using Dried Seaweed As Nucleant Or Protease Length = 394 Back     alignment and structure 
Iteration: 1

 Score =  313 bits (802), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 149/388 (38%), Positives = 226/388 (58%), Gaps = 32/388 (8%)
Query: 1   MKTYLFPGQGSQYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
           + T++FPGQGSQ  GMG  LFD+F D+  +++ +LGYSI+ LC+ + +++L +T++TQPA
Sbjct: 6   LNTFMFPGQGSQAKGMGGALFDRFADLTAQADAVLGYSIRALCVDDPRDELGRTQFTQPA 65
Query: 61  LYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVL 120
           LY+VNAL+Y    +++GE  DFL GHSLGE+NAL +AG F FE GL+LV +R++LMSQ  
Sbjct: 66  LYVVNALTYYAKCEDSGETPDFLAGHSLGEFNALLAAGCFDFETGLKLVARRAELMSQAR 125
Query: 121 DGAMAAVXXXXXXXXXXXXXXXXXXXXDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAI 180
           DGAMAA+                     IAN NT +Q++I+GP ++I  A+  F+ +   
Sbjct: 126 DGAMAAIVNASREQIERTLDEHGLVDTAIANDNTPSQLVISGPAHEIARAEALFQHDRVR 185
Query: 181 YIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHL 240
           Y+ LN SG FHS++M+P  + F   L  F    P IPVISN  A PY   +++  L+  +
Sbjct: 186 YLRLNTSGAFHSKFMRPAQQAFAAHLQSFRLADPAIPVISNVSARPYENGRVSEGLAQQI 245
Query: 241 INPVKWFDSIYYLL---NKSKNEMEFMEIGPGTVLTKFIKSIKNEY-------------- 283
            +PV+W +SI YLL    +    +EF E+G G VLT+ + +I+ +               
Sbjct: 246 ASPVRWCESIRYLLALAAERGEAIEFTELGHGDVLTRLVHTIRRQTPAPAAAATSARARP 305
Query: 284 ------------KKDCVIKDDILEQS--QEKKIEKWNNKYPIGTKVKVKG-YKDILITKT 328
                               D    S    +++  WN  YP+GT+V+    + D+L T+T
Sbjct: 306 TPPGEPERPAQQTAAAPRASDSASASLGAAERVAAWNRDYPVGTRVRSSLIHDDVLETRT 365
Query: 329 KSMLLFENKAVIYIEGYNGYFLLDDVQP 356
            + +LF ++A +Y++GYNGYF L +V P
Sbjct: 366 PATVLFGHRAAVYMKGYNGYFDLAEVTP 393
>pdb|3SBM|A Chain A, Trans-Acting Transferase From Disorazole Synthase In Complex With Acetate Length = 281 Back     alignment and structure
>pdb|3RGI|A Chain A, Trans-Acting Transferase From Disorazole Synthase Length = 286 Back     alignment and structure
>pdb|3IM8|A Chain A, Crystal Structure Of Mcat From Streptococcus Pneumoniae Length = 307 Back     alignment and structure
>pdb|3IM9|A Chain A, Crystal Structure Of Mcat From Staphylococcus Aureus Length = 316 Back     alignment and structure
>pdb|2G1H|A Chain A, Structure Of E.Coli Fabd Complexed With Glycerol Length = 308 Back     alignment and structure
>pdb|1MLA|A Chain A, The Escherichia Coli Malonyl-Coa:acyl Carrier Protein Transacylase At 1.5-Angstroms Resolution. Crystal Structure Of A Fatty Acid Synthase Component Length = 309 Back     alignment and structure
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein Transacylase From Clostridium Perfringens Atcc 13124 Length = 336 Back     alignment and structure
>pdb|3K89|A Chain A, Structure Of X. Oryzae Pv. Oryzae Kacc10331, Xoo0880(Fabd) Complexed With Glycerol Length = 314 Back     alignment and structure
>pdb|3EZO|A Chain A, Crystal Structure Of Acyl-Carrier-Protein S- Malonyltransferase From Burkholderia Pseudomallei 1710b Length = 318 Back     alignment and structure
>pdb|2CUY|A Chain A, Crystal Structure Of Malonyl Coa-acyl Carrier Protein Transacylase From Thermus Thermophilus Hb8 Length = 305 Back     alignment and structure
>pdb|3H0P|A Chain A, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein S- Malonyltransferase From Salmonella Typhimurium. Length = 312 Back     alignment and structure
>pdb|3QAT|A Chain A, Crystal Structure Of Acyl-Carrier-Protein-S-Malonyltransferase From Bartonella Henselae Length = 318 Back     alignment and structure
>pdb|3HJV|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of An Acyl Carrier Protein S-Malonyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 Length = 312 Back     alignment and structure
>pdb|3TQE|A Chain A, Structure Of The Malonyl Coa-Acyl Carrier Protein Transacylase (Fabd) From Coxiella Burnetii Length = 316 Back     alignment and structure
>pdb|2H1Y|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein Transacylase (Mcat) From Helicobacter Pylori Length = 321 Back     alignment and structure
>pdb|2C2N|A Chain A, Structure Of Human Mitochondrial Malonyltransferase Length = 339 Back     alignment and structure
>pdb|2CDH|4 Chain 4, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 305 Back     alignment and structure
>pdb|2CF2|B Chain B, Architecture Of Mammalian Fatty Acid Synthase Length = 304 Back     alignment and structure
>pdb|1NM2|A Chain A, "malonyl-Coa:acp Transacylase" Length = 317 Back     alignment and structure
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of Module 5 From Debs. Length = 917 Back     alignment and structure
>pdb|4AMN|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The Iterative Polyketide Synthase In Enediyne Biosynthesis Reveals The Molecular Basis Of Substrate Specificity Length = 421 Back     alignment and structure
>pdb|4AMM|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The Iterative Polyketide Synthase In Enediyne Biosynthesis Reveals The Molecular Basis Of Substrate Specificity Length = 401 Back     alignment and structure
>pdb|4AMO|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The Iterative Polyketide Synthase In Enediyne Biosynthesis Reveals The Molecular Basis Of Substrate Specificity Length = 421 Back     alignment and structure
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of 6- Deoxyerthronolide B Synthase Length = 915 Back     alignment and structure
>pdb|2QC3|A Chain A, Crystal Structure Of Mcat From Mycobacterium Tuberculosis Length = 303 Back     alignment and structure
>pdb|2QJ3|A Chain A, Mycobacterium Tuberculosis Fabd Length = 322 Back     alignment and structure
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas Length = 425 Back     alignment and structure
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain As A Framework For Inhibitor Design. Length = 965 Back     alignment and structure
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa Length = 433 Back     alignment and structure
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase Length = 2512 Back     alignment and structure
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid Synthase Type I Multienzyme Complex Length = 2051 Back     alignment and structure
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase Length = 3089 Back     alignment and structure
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase Length = 2006 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query358
3g87_A394 Malonyl COA-acyl carrier protein transacylase; ssg 1e-150
3sbm_A281 DISD protein, DSZD; transferase; HET: P6G; 1.35A { 1e-127
3ptw_A336 Malonyl COA-acyl carrier protein transacylase; str 3e-98
2h1y_A321 Malonyl coenzyme A-acyl carrier protein transacyl; 2e-97
2cuy_A305 Malonyl COA-[acyl carrier protein] transacylase; t 2e-96
1mla_A309 Malonyl-coenzyme A acyl carrier protein transacyla 3e-96
3tqe_A316 Malonyl-COA-[acyl-carrier-protein] transacylase; f 4e-96
3im8_A307 Malonyl acyl carrier protein transacylase; fatty a 4e-96
3k89_A314 Malonyl COA-ACP transacylase; bacterial blight, XO 1e-95
3qat_A318 Malonyl COA-acyl carrier protein transacylase; sea 1e-95
3im9_A316 MCAT, MCT, malonyl COA-acyl carrier protein transa 3e-95
3ezo_A318 Malonyl COA-acyl carrier protein transacylase; ssg 2e-94
2c2n_A339 Malonyl COA-acyl carrier protein transacylase; fat 4e-91
1nm2_A317 Malonyl COA:acyl carrier protein malonyltransfera; 1e-89
2qc3_A303 MCT, malonyl COA-acyl carrier protein transacylase 4e-89
4amm_A401 DYNE8; transferase; 1.40A {Micromonospora chersina 1e-55
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 2e-45
2uva_G 2060 Fatty acid synthase beta subunits; fungal, dehydra 1e-43
2uva_G2060 Fatty acid synthase beta subunits; fungal, dehydra 3e-43
2uv8_G2051 Fatty acid synthase subunit beta (FAS1); fatty aci 6e-43
2uv8_G 2051 Fatty acid synthase subunit beta (FAS1); fatty aci 3e-39
3hhd_A 965 Fatty acid synthase; transferase, multienzyme, meg 5e-41
2qo3_A915 Eryaii erythromycin polyketide synthase modules 3; 2e-36
2hg4_A917 DEBS, 6-deoxyerythronolide B synthase; ketosynthas 3e-36
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid, decode biostructures, dried seaweed, acyltran transferase; 2.30A {Burkholderia pseudomallei} Length = 394 Back     alignment and structure
 Score =  428 bits (1102), Expect = e-150
 Identities = 151/388 (38%), Positives = 232/388 (59%), Gaps = 32/388 (8%)

Query: 1   MKTYLFPGQGSQYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPA 60
           + T++FPGQGSQ  GMG  LFD+F D+  +++ +LGYSI+ LC+ + +++L +T++TQPA
Sbjct: 6   LNTFMFPGQGSQAKGMGGALFDRFADLTAQADAVLGYSIRALCVDDPRDELGRTQFTQPA 65

Query: 61  LYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVL 120
           LY+VNAL+Y    +++GE  DFL GHSLGE+NAL +AG F FE GL+LV +R++LMSQ  
Sbjct: 66  LYVVNALTYYAKCEDSGETPDFLAGHSLGEFNALLAAGCFDFETGLKLVARRAELMSQAR 125

Query: 121 DGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFEKNNAI 180
           DGAMAA++  + ++I   L E+ L    IAN NT +Q++I+GP ++I  A+  F+ +   
Sbjct: 126 DGAMAAIVNASREQIERTLDEHGLVDTAIANDNTPSQLVISGPAHEIARAEALFQHDRVR 185

Query: 181 YIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHL 240
           Y+ LN SG FHS++M+P  + F   L  F    P IPVISN  A PY   +++  L+  +
Sbjct: 186 YLRLNTSGAFHSKFMRPAQQAFAAHLQSFRLADPAIPVISNVSARPYENGRVSEGLAQQI 245

Query: 241 INPVKWFDSIYYLLNK---SKNEMEFMEIGPGTVLTKFIKSIKNEYKKDCVIKDDILEQS 297
            +PV+W +SI YLL         +EF E+G G VLT+ + +I+ +             + 
Sbjct: 246 ASPVRWCESIRYLLALAAERGEAIEFTELGHGDVLTRLVHTIRRQTPAPAAAATSARARP 305

Query: 298 QEK----------------------------KIEKWNNKYPIGTKVKVKG-YKDILITKT 328
                                          ++  WN  YP+GT+V+    + D+L T+T
Sbjct: 306 TPPGEPERPAQQTAAAPRASDSASASLGAAERVAAWNRDYPVGTRVRSSLIHDDVLETRT 365

Query: 329 KSMLLFENKAVIYIEGYNGYFLLDDVQP 356
            + +LF ++A +Y++GYNGYF L +V P
Sbjct: 366 PATVLFGHRAAVYMKGYNGYFDLAEVTP 393
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium cellulosum} PDB: 3rgi_A Length = 281 Back     alignment and structure
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics, protein structure initiative; 2.10A {Clostridium perfringens} Length = 336 Back     alignment and structure
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT, transferase; 2.50A {Helicobacter pylori} Length = 321 Back     alignment and structure
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} Length = 305 Back     alignment and structure
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase; acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1 d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A 3hjv_A* Length = 309 Back     alignment and structure
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty acid/phospholipid metabolism, transferase; HET: MSE; 1.50A {Coxiella burnetii} Length = 316 Back     alignment and structure
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA, acyl carrier protein TRAN (MCAT), FABD, acyltransferase; 2.10A {Streptococcus pneumoniae} Length = 307 Back     alignment and structure
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. ORYZ KACC10331, transferase; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A* Length = 314 Back     alignment and structure
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural genomics center for infectious disease, S bartonella, CAT-scratch disease; 1.60A {Bartonella henselae} Length = 318 Back     alignment and structure
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus} Length = 316 Back     alignment and structure
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B} Length = 318 Back     alignment and structure
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase, lipid synthesis, mitochondrion transfer transferase; HET: AE4; 1.55A {Homo sapiens} Length = 339 Back     alignment and structure
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta hydrolase-like core; 2.00A {Streptomyces coelicolor} SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B Length = 317 Back     alignment and structure
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP transacylase, , nucleophili fatty acids biosynthesis; 2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A Length = 303 Back     alignment and structure
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A 4amp_A 4amo_A Length = 401 Back     alignment and structure
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Length = 2060 Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Length = 2060 Back     alignment and structure
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* Length = 2051 Back     alignment and structure
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* Length = 2051 Back     alignment and structure
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 Back     alignment and structure
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Length = 915 Back     alignment and structure
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Length = 917 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query358
3g87_A394 Malonyl COA-acyl carrier protein transacylase; ssg 100.0
3sbm_A281 DISD protein, DSZD; transferase; HET: P6G; 1.35A { 100.0
3ptw_A336 Malonyl COA-acyl carrier protein transacylase; str 100.0
3tzy_A491 Polyketide synthase PKS13; acyltransferase, long f 100.0
3im8_A307 Malonyl acyl carrier protein transacylase; fatty a 100.0
3ezo_A318 Malonyl COA-acyl carrier protein transacylase; ssg 100.0
3k89_A314 Malonyl COA-ACP transacylase; bacterial blight, XO 100.0
2cuy_A305 Malonyl COA-[acyl carrier protein] transacylase; t 100.0
1mla_A309 Malonyl-coenzyme A acyl carrier protein transacyla 100.0
3tqe_A316 Malonyl-COA-[acyl-carrier-protein] transacylase; f 100.0
3qat_A318 Malonyl COA-acyl carrier protein transacylase; sea 100.0
2qc3_A303 MCT, malonyl COA-acyl carrier protein transacylase 100.0
2h1y_A321 Malonyl coenzyme A-acyl carrier protein transacyl; 100.0
1nm2_A317 Malonyl COA:acyl carrier protein malonyltransfera; 100.0
3im9_A316 MCAT, MCT, malonyl COA-acyl carrier protein transa 100.0
2hg4_A917 DEBS, 6-deoxyerythronolide B synthase; ketosynthas 100.0
2qo3_A915 Eryaii erythromycin polyketide synthase modules 3; 100.0
4amm_A401 DYNE8; transferase; 1.40A {Micromonospora chersina 100.0
2c2n_A339 Malonyl COA-acyl carrier protein transacylase; fat 100.0
3hhd_A965 Fatty acid synthase; transferase, multienzyme, meg 100.0
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 100.0
2uv8_G 2051 Fatty acid synthase subunit beta (FAS1); fatty aci 100.0
3zen_D 3089 Fatty acid synthase; transferase, mycolic acid bio 100.0
2uva_G 2060 Fatty acid synthase beta subunits; fungal, dehydra 100.0
3zen_D 3089 Fatty acid synthase; transferase, mycolic acid bio 100.0
2uv8_G2051 Fatty acid synthase subunit beta (FAS1); fatty aci 100.0
2uva_G2060 Fatty acid synthase beta subunits; fungal, dehydra 100.0
2uv8_A 1887 Fatty acid synthase subunit alpha (FAS2); fatty ac 97.34
2uv9_A 1878 Fatty acid synthase alpha subunits; fungal, dehydr 94.07
1tqh_A247 Carboxylesterase precursor; tetrahedral intermedia 82.95
2wj6_A276 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid 81.82
1ehy_A294 Protein (soluble epoxide hydrolase); alpha/beta hy 81.48
3bf7_A255 Esterase YBFF; thioesterase, helical CAP, hydrolas 81.41
3om8_A266 Probable hydrolase; structural genomics, PSI-2, pr 80.9
1tht_A305 Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. 80.53
3v48_A268 Aminohydrolase, putative aminoacrylate hydrolase R 80.11
3bwx_A285 Alpha/beta hydrolase; YP_496220.1, joint center fo 80.01
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid, decode biostructures, dried seaweed, acyltran transferase; 2.30A {Burkholderia pseudomallei} Back     alignment and structure
Probab=100.00  E-value=6.5e-76  Score=564.02  Aligned_cols=355  Identities=43%  Similarity=0.814  Sum_probs=271.9

Q ss_pred             CEEEEecCCCcchHHHHHHHHhhcHHHHHHHHHHhCCCHHHHhcccccccccCCchhHHHHHHHHHHHHHHHHHHhCCCc
Q psy2373           1 MKTYLFPGQGSQYVGMGQLLFDKFPDIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQPALYIVNALSYRDHIKNTGEYA   80 (358)
Q Consensus         1 ~i~fvF~Gqg~~~~~~~~~L~~~~~~~~~~~~~~lg~~l~~~~~~~~~~~~~~~~~~~~~l~~~q~~a~~~~l~~~Gv~P   80 (358)
                      +++|+|||||+||+|||++||+.||.+++++++++|+++.+++.+++.+.+.++.++||++|++|+++++++|+++|++|
T Consensus         6 ~~afvFpGQGsQ~~gMg~~L~~~~~~~~~~~d~~lg~~l~~l~~~~~~~~l~~t~~~QPalfav~~lal~~ll~~~Gi~P   85 (394)
T 3g87_A            6 LNTFMFPGQGSQAKGMGGALFDRFADLTAQADAVLGYSIRALCVDDPRDELGRTQFTQPALYVVNALTYYAKCEDSGETP   85 (394)
T ss_dssp             EEEEEECCTTCCCTTCSTTHHHHTHHHHHHHHHHHSSCHHHHHHTCTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             cEEEEECCcchhhHhHHHHHHHHCHHHHHHHHHHhCCCHHHHhccCchhhhccchHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            48999999999999999999999999999999999999999888777778899999999999999678999999999999


Q ss_pred             CEEeecChHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcCCCCceEEEcCCCHHHHHHHHHhcCCCceEEecccCCCcEEE
Q psy2373          81 DFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVLDGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIII  160 (358)
Q Consensus        81 ~~v~GhS~GE~aAa~~aG~ls~~da~~l~~~r~~~~~~~~~g~m~aV~~~~~~~~~~~l~~~~~~~v~ia~~nsp~~~vi  160 (358)
                      ++++|||+|||+|+|+||++|++|++++++.|+++|++..+|+|++|++++.++++++|++.+.++++|||+|+|+++||
T Consensus        86 ~av~GHSlGE~aAa~aAG~ls~edal~lv~~Rg~lm~~~~~G~M~AV~~~~~~~v~~~l~~~~~~~v~IA~~Nsp~~~Vi  165 (394)
T 3g87_A           86 DFLAGHSLGEFNALLAAGCFDFETGLKLVARRAELMSQARDGAMAAIVNASREQIERTLDEHGLVDTAIANDNTPSQLVI  165 (394)
T ss_dssp             SEEEECTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCCSEEEEEEESCCHHHHHHHHHHTTCTTCEEEEEEETTEEEE
T ss_pred             ceeeecCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCCceEEEECCCHHHHHHHHHhcCCCcEEEEEEcCCCceEe
Confidence            99999999999999999999999999999999999999989999999999999999999987556799999999999999


Q ss_pred             EcchhhHHHHHHHHHhCCcEEEEccCCCCCccccchHHHHHHHHHhccCCCCCCCccEEeCCCCcccChhHHHHHHHHhc
Q psy2373         161 AGPKNDINNAQIFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEKITNNLSNHL  240 (358)
Q Consensus       161 sG~~~~l~~l~~~l~~~g~~~~~L~v~~~fHs~~~~~~~~~~~~~l~~~~~~~p~ip~~S~~~g~~~~~~~~~~~~~~~~  240 (358)
                      ||+.++++++.+.+++.|+++++|+|++|||||+|+++.+++.+.+..+.+++|++|+|||++|++++++++.+||.+|+
T Consensus       166 SG~~~al~~l~~~l~~~g~~~~~L~V~~afHS~~m~~~~~~~~~~l~~~~~~~p~ipv~S~vtg~~~~~~~~~~~~~~~l  245 (394)
T 3g87_A          166 SGPAHEIARAEALFQHDRVRYLRLNTSGAFHSKFMRPAQQAFAAHLQSFRLADPAIPVISNVSARPYENGRVSEGLAQQI  245 (394)
T ss_dssp             EEEHHHHHHHGGGSCSSSCEEEECSCSSCTTSGGGHHHHHHHHHHHTTSCCCCCSSCEECTTTSSBCCTTCHHHHHHHGG
T ss_pred             cCCHHHHHHHHHHHHhCCCeEEECCCCCCcCChhhhhhHHHHHHHHhcCCCCCCCceEEECCCCcCCCchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998777889999999


Q ss_pred             CCcccHHHHHHHHHhcCCCC-----cEEEEECCchHHHHHHHHHHhhccCCccchhhH----------------------
Q psy2373         241 INPVKWFDSIYYLLNKSKNE-----MEFMEIGPGTVLTKFIKSIKNEYKKDCVIKDDI----------------------  293 (358)
Q Consensus       241 ~~pv~f~~~v~~~~~~~~g~-----~~~veiGP~~~l~~~~~~~l~~~~~~~~~~~~~----------------------  293 (358)
                      ++||+|.++++.+.++  |.     ++||||||+++|++++++++++.++........                      
T Consensus       246 ~~pV~f~~av~~l~~~--g~~~~~~~~fvEiGP~~~L~~li~~il~~~~~~a~~~~~~~~~~~~~~~p~~~~~w~~~aP~  323 (394)
T 3g87_A          246 ASPVRWCESIRYLLAL--AAERGEAIEFTELGHGDVLTRLVHTIRRQTPAPAAAATSARARPTPPGEPERPAQQTAAAPR  323 (394)
T ss_dssp             GSCBCHHHHHHHHHHH--HHHTTCCEEEEECSSSSHHHHHHHHHHHSSCC------------------------------
T ss_pred             hCceeHHHHHHHHHhc--CCCcCCCCEEEEeCCcHHHHHHHHHHhccCCccceeccccccccCCccccccccchHhhCCc
Confidence            9999999999999988  87     899999999999999999999887664433222                      


Q ss_pred             ------HHHhhhhhhccccccCCCCccccccCCC-ccccccchhhhccccccccccccccceeecCCCCcC
Q psy2373         294 ------LEQSQEKKIEKWNNKYPIGTKVKVKGYK-DILITKTKSMLLFENKAVIYIEGYNGYFLLDDVQPI  357 (358)
Q Consensus       294 ------~~l~~~~~~~~w~~~~~~~~~~~lp~y~-~~~~~~~~~~~~~~~~~~~~llg~r~~~~~~~~~~~  357 (358)
                            ..+-......+|++.|+.|.+|+.+.|. +..++++++..+|+|++.+++-||++||+|+||.|.
T Consensus       324 ~~~~~~~~~~~~~~~~~w~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (394)
T 3g87_A          324 ASDSASASLGAAERVAAWNRDYPVGTRVRSSLIHDDVLETRTPATVLFGHRAAVYMKGYNGYFDLAEVTPA  394 (394)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             cccccCcccchHHHHHHHHhcCCCceEEEecccCCcceeecchhhhhcCCceeeeeccccceEEhhhcccC
Confidence                  1122334567999999999999999986 567889999999999999999999999999999983
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium cellulosum} PDB: 3rgi_A Back     alignment and structure
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics, protein structure initiative; 2.10A {Clostridium perfringens} Back     alignment and structure
>3tzy_A Polyketide synthase PKS13; acyltransferase, long fatty acid chain transferase, acyl CAR protein, transferase; HET: PLM; 2.20A {Mycobacterium tuberculosis} PDB: 3tzw_A 3tzx_A* 3tzz_A* Back     alignment and structure
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA, acyl carrier protein TRAN (MCAT), FABD, acyltransferase; 2.10A {Streptococcus pneumoniae} Back     alignment and structure
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. ORYZ KACC10331, transferase; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A* Back     alignment and structure
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} Back     alignment and structure
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase; acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1 d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A 3hjv_A* Back     alignment and structure
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty acid/phospholipid metabolism, transferase; HET: MSE; 1.50A {Coxiella burnetii} Back     alignment and structure
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural genomics center for infectious disease, S bartonella, CAT-scratch disease; 1.60A {Bartonella henselae} Back     alignment and structure
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP transacylase, , nucleophili fatty acids biosynthesis; 2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A Back     alignment and structure
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT, transferase; 2.50A {Helicobacter pylori} Back     alignment and structure
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta hydrolase-like core; 2.00A {Streptomyces coelicolor} SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B Back     alignment and structure
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus} Back     alignment and structure
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Back     alignment and structure
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Back     alignment and structure
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A 4amp_A 4amo_A Back     alignment and structure
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase, lipid synthesis, mitochondrion transfer transferase; HET: AE4; 1.55A {Homo sapiens} Back     alignment and structure
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Back     alignment and structure
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Back     alignment and structure
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* Back     alignment and structure
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Back     alignment and structure
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* Back     alignment and structure
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* Back     alignment and structure
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Back     alignment and structure
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Back     alignment and structure
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Back     alignment and structure
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A Back     alignment and structure
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* Back     alignment and structure
>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 Back     alignment and structure
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A Back     alignment and structure
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 Back     alignment and structure
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 Back     alignment and structure
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} Back     alignment and structure
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 358
d1nm2a1253 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of m 1e-25
d1mlaa1235 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of m 7e-25
d1mlaa1235 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of m 4e-18
d1mlaa270 d.58.23.1 (A:128-197) Probable ACP-binding domain 1e-11
d1nm2a262 d.58.23.1 (A:134-195) Probable ACP-binding domain 1e-10
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of malonyl-CoA ACP transacylase FabD {Streptomyces coelicolor A3(2) [TaxId: 100226]} Length = 253 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: FabD-like
domain: Catalytic domain of malonyl-CoA ACP transacylase FabD
species: Streptomyces coelicolor A3(2) [TaxId: 100226]

 Score =  101 bits (253), Expect = 1e-25
 Identities = 43/282 (15%), Positives = 75/282 (26%), Gaps = 59/282 (20%)

Query: 1   MKTYLFPGQGSQYVGMGQLLFDKFP--DIIEKSNNILGYSIKELCLKNSKNQLNKTEYTQ 58
           M   + PGQG+Q  G            D +   ++ +G  +     K   +++  T   Q
Sbjct: 2   MLVLVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQ 61

Query: 59  PALYIVNALSYRDHIKNTGEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQ 118
           P                         G       AL +    +   G          ++ 
Sbjct: 62  P--------------------LLVAAGILS--AAALGTQTSVADATGPGF---TPGAVAG 96

Query: 119 VLDGAMAAVIGINYKKILNILKENNLNTIDIANYNTLNQIIIAGPKNDINNAQIFFEKNN 178
              G + A +                     A                  +         
Sbjct: 97  HSVGEITAAV--------------------FAGVLDDT---------AALSLVRRRGLAM 127

Query: 179 AIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSIEK-ITNNLS 237
           A    + V+G FH+R+M P   K            P +  +SN +    +    + + L 
Sbjct: 128 AEAAAVTVAGAFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVASGTEVLDRLV 187

Query: 238 NHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSI 279
             + NPV+W   +             +E+ PG  LT   K  
Sbjct: 188 GQVANPVRWDLCMETFKEL--GVTAIIEVCPGGTLTGLAKRA 227
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]} Length = 235 Back     information, alignment and structure
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]} Length = 235 Back     information, alignment and structure
>d1mlaa2 d.58.23.1 (A:128-197) Probable ACP-binding domain of malonyl-CoA ACP transacylase {Escherichia coli [TaxId: 562]} Length = 70 Back     information, alignment and structure
>d1nm2a2 d.58.23.1 (A:134-195) Probable ACP-binding domain of malonyl-CoA ACP transacylase {Streptomyces coelicolor A3(2) [TaxId: 100226]} Length = 62 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query358
d1mlaa1235 Catalytic domain of malonyl-CoA ACP transacylase F 100.0
d1nm2a1253 Catalytic domain of malonyl-CoA ACP transacylase F 100.0
d1mlaa270 Probable ACP-binding domain of malonyl-CoA ACP tra 99.37
d1nm2a262 Probable ACP-binding domain of malonyl-CoA ACP tra 99.2
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: FabD-like
domain: Catalytic domain of malonyl-CoA ACP transacylase FabD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.7e-50  Score=357.55  Aligned_cols=218  Identities=34%  Similarity=0.577  Sum_probs=199.2

Q ss_pred             CEEEEecCCCcchHHHHHHHHhhcHHH---HHHHHHHhCCCHHHHhcccccccccCCchhHHHHHHHHHHHHHHHHHHh-
Q psy2373           1 MKTYLFPGQGSQYVGMGQLLFDKFPDI---IEKSNNILGYSIKELCLKNSKNQLNKTEYTQPALYIVNALSYRDHIKNT-   76 (358)
Q Consensus         1 ~i~fvF~Gqg~~~~~~~~~L~~~~~~~---~~~~~~~lg~~l~~~~~~~~~~~~~~~~~~~~~l~~~q~~a~~~~l~~~-   76 (358)
                      ..+|+|||||+||+|||++||+++|.|   ++++++++|+++.+.+...+...+.++.+.||++|++| ++++++|+++ 
T Consensus         1 q~AfvFpGQGsQ~~gMg~~L~~~~p~~r~~~~~~~~~l~~~l~~~~~~~~~~~~~~t~~~qpai~~~~-~al~~~l~~~~   79 (235)
T d1mlaa1           1 QFAFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQPALLTAS-VALYRVWQQQG   79 (235)
T ss_dssp             CEEEEECCTTCCCTTTTHHHHHHCHHHHHHHHHHHHHHTSCHHHHHHHCCHHHHTSHHHHHHHHHHHH-HHHHHHHHHTT
T ss_pred             CEEEEeCChhhhHHHHHHHHHHCCHHHHHHHHHHHHHhCCCHHHHHhcCcccccccHHHHHHHHHHHH-HHHHHHHHHhc
Confidence            369999999999999999999998865   45677789999988888777778889999999999999 8999999986 


Q ss_pred             CCCcCEEeecChHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcCCCCceEEEcCCCHHHHHHHHHhcCCCceEEecccCCC
Q psy2373          77 GEYADFLVGHSLGEYNALESAGVFSFEDGLRLVQKRSKLMSQVLDGAMAAVIGINYKKILNILKENNLNTIDIANYNTLN  156 (358)
Q Consensus        77 Gv~P~~v~GhS~GE~aAa~~aG~ls~~da~~l~~~r~~~~~~~~~g~m~aV~~~~~~~~~~~l~~~~~~~v~ia~~nsp~  156 (358)
                      |++|++++|||+|||+|+++||++|++|+++++..|+.+|+....                                   
T Consensus        80 g~~p~~v~GhSlGE~aAl~~aG~ls~e~~~~lv~~Rg~~m~~~~~-----------------------------------  124 (235)
T d1mlaa1          80 GKAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKFMQEAVP-----------------------------------  124 (235)
T ss_dssp             CCCCSEEEESTHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHSC-----------------------------------
T ss_pred             CCCceeeeeccchHHHHHHHcCCcccccHHHHHHHHHHHHHHcCC-----------------------------------
Confidence            999999999999999999999999999999999999998864211                                   


Q ss_pred             cEEEEcchhhHHHHHHHHHhCCcEEEEccCCCCCccccchHHHHHHHHHhccCCCCCCCccEEeCCCCcccCh-hHHHHH
Q psy2373         157 QIIIAGPKNDINNAQIFFEKNNAIYIPLNVSGPFHSRYMKPIYKKFNNFLLDFVFHSPNIPVISNFEALPYSI-EKITNN  235 (358)
Q Consensus       157 ~~visG~~~~l~~l~~~l~~~g~~~~~L~v~~~fHs~~~~~~~~~~~~~l~~~~~~~p~ip~~S~~~g~~~~~-~~~~~~  235 (358)
                                                    ..||||++|+++.+++.+.++++.++.|++|+|||++|+++++ +.+++|
T Consensus       125 ------------------------------~~pfHs~~m~~~~~~~~~~l~~v~~~~p~~pviS~~tg~~~~~~~~~~~~  174 (235)
T d1mlaa1         125 ------------------------------EVPSHCALMKPAADKLAVELAKITFNAPTVPVVNNVDVKCETNGDAIRDA  174 (235)
T ss_dssp             ------------------------------TSCTTSGGGHHHHHHHHHHHHTSCCCCCSSCBBCTTTCCBCCSHHHHHHH
T ss_pred             ------------------------------CCcchhHHhhhhHHHHHHHHhcCCCCCCcceEEeCCCCCCCCCHHHHHHH
Confidence                                          2489999999999999999999999999999999999999875 667899


Q ss_pred             HHHhcCCcccHHHHHHHHHhcCCCCcEEEEECCchHHHHHHHHHHhhccCC
Q psy2373         236 LSNHLINPVKWFDSIYYLLNKSKNEMEFMEIGPGTVLTKFIKSIKNEYKKD  286 (358)
Q Consensus       236 ~~~~~~~pv~f~~~v~~~~~~~~g~~~~veiGP~~~l~~~~~~~l~~~~~~  286 (358)
                      |.+|+++||+|.++++++.++  |+++||||||+++|++++++++++.+..
T Consensus       175 l~~ql~~pV~f~~~i~~l~~~--g~~~fiEiGP~~~Lt~l~~~i~~~~~~~  223 (235)
T d1mlaa1         175 LVRQLYNPVQWTKSVEYMAAQ--GVEHLYEVGPGKVLTGLTKRIVDTLTAS  223 (235)
T ss_dssp             HHHHHHSCEEHHHHHHHHHHT--TCCEEEECSSSSHHHHHHHHHCTTCEEE
T ss_pred             HHHhccCCccHHHHHHHHHHC--CCCEEEEeCCcHHHHHHHHHHcCCCCce
Confidence            999999999999999999999  9999999999999999999999876544
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of malonyl-CoA ACP transacylase FabD {Streptomyces coelicolor A3(2) [TaxId: 100226]} Back     information, alignment and structure
>d1mlaa2 d.58.23.1 (A:128-197) Probable ACP-binding domain of malonyl-CoA ACP transacylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nm2a2 d.58.23.1 (A:134-195) Probable ACP-binding domain of malonyl-CoA ACP transacylase {Streptomyces coelicolor A3(2) [TaxId: 100226]} Back     information, alignment and structure