Psyllid ID: psy2408

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MNKIDTQKNKNKDIKDIKENKDIKENKGNKGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYMSKNLGYIIVTAKKI
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHccccccEEEEEccccccccccccEEEEEEEcccccccHHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHHcccccccHHHHHHHHHHcccEEEEEEEcccccHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHcccccHHHHccccHHHHHHHHHHHcccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccccEEEEEccHHccccccccccEEEEEEcccccccHHHHHHHHHHHccccEEEEEEEEccccccccccHHHHHHHHcccccccHHHHHHHHHHcccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcHccccEEEEEEEcc
Coil and Loop (DISEMBL)
mnkidtqknknkdikdikenkdikenkgnkgkktvatlydspegqigsvLFGGhmhwgywdesnskdnfaqgsdKLSRIMINktsitkgqrfidigcgfglsGIRLAKakgcrvdgitisKFQQESAMKTAKAEGLLDKVNFlhgdalnlpfdndsfdggwfFESIFHMNHSAALNEARRVLKSgsiltltdlpllsvskndNKFKEYVKKNIHSNFILVEHYpdllnksgfelikidditshvmpllvpkltEATLTYKKEIYksipnpeksiDNWLYLFKYMSKNLGYIIVTAKKI
Flexible Loop (DISEMBL)
mnkidtqknknkdikdikenkdikenkgnkgkktvatlydspegQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKtsitkgqrfidIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSiltltdlpllsvsknDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKeiyksipnpeksiDNWLYLFKYMSKNLGYIIVTAKKI
Low Complexity Region (SEG)
MnkidtqknknkdikdikenkdikenkgnkgkktVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYMSKNLGYIIVTAKKI
Disordered region (IsUnstruct)
************************************TLYDSPEGQIGSVLFGGHMHWGYWDE*************LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYMSKNLGYIIVT****
Disordered Region (DISOPRED)
**********************************VATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYMSKNLGYIIVTAKKI
Disordered Region (DISEMBL)
**********NKDIKDIKENKDIKENKGNKGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYMSKNLGYIIVTAKKI
Disordered Region (DISPRO)
MNKIDTQKNKNKDIKDIKENKDIKENKGNKGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYMSKNLGYIIVTAKKI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNKIDTxxxxxxxxxxxxxxxxxxxxxGNKGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYMSKNLGYIIVTAKKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	298	2.2.26 [Sep-21-2011]
Q8KZ94	283	Demethylrebeccamycin-D-gl	N/A	N/A	0.815	0.858	0.298	5e-30
Q6ZIK0	362	Probable tocopherol O-met	yes	N/A	0.748	0.616	0.285	3e-16
Q9ZSK1	348	Tocopherol O-methyltransf	yes	N/A	0.761	0.652	0.274	2e-14
Q5EN22	390	Sterol 24-C-methyltransfe	N/A	N/A	0.580	0.443	0.278	5e-14
Q83WC3	277	Sarcosine/dimethylglycine	N/A	N/A	0.617	0.664	0.308	6e-14
Q9KJ20	565	Glycine/sarcosine/dimethy	N/A	N/A	0.697	0.368	0.239	1e-12
Q94JS4	359	24-methylenesterol C-meth	no	N/A	0.620	0.515	0.275	1e-11
H2E7T8	389	Sterol methyltransferase-	N/A	N/A	0.466	0.357	0.321	1e-11
Q759S7	373	Sterol 24-C-methyltransfe	yes	N/A	0.580	0.463	0.251	2e-11
Q875K1	375	Sterol 24-C-methyltransfe	N/A	N/A	0.422	0.336	0.267	2e-10

>sp|Q8KZ94|REBMT_NOCAE Demethylrebeccamycin-D-glucose O-methyltransferase OS=Lechevalieria aerocolonigenes GN=rebM PE=1 SV=1

 Score =  132 bits (331), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 134/255 (52%), Gaps = 12/255 (4%)

Query: 50  LFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA 109
           ++G ++H+GYW+++ +  +    +D+L+  MI    +  G R +D+GCG G   +RLA A
Sbjct: 33  IWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATA 92

Query: 110 KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM 169
           +  RV GI+IS+ Q   A   A A GL ++V F + DA++LPF++ SFD  W  ES+ HM
Sbjct: 93  RDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHM 152

Query: 170 -NHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFIL----VEHYP 224
            +   AL E  RVL+ G  + + D  LL  +  +   KE V        +L    ++ Y 
Sbjct: 153 PDRGRALREMARVLRPGGTVAIADFVLL--APVEGAKKEAVDAFRAGGGVLSLGGIDEYE 210

Query: 225 DLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYM 284
             + ++   +    DI++   P LV K  EA    + ++   +    + +D  +  F+ +
Sbjct: 211 SDVRQAELVVTSTVDISAQARPSLV-KTAEAFENARSQVEPFMGA--EGLDRMIATFRGL 267

Query: 285 SK--NLGYIIVTAKK 297
           ++    GY+++ A+K
Sbjct: 268 AEVPEAGYVLIGARK 282

Glycosyl O-methyltransferase that catalyzes the final step in the biosynthesis of rebeccamycin, an indolocarbazole alkaloid that inhibits topoisomerase 1. Has broad substrate specificity and functions as glycosyl O-methyltransferase on a number of rebeccamycin analogs.
Lechevalieria aerocolonigenes (taxid: 68170)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q6ZIK0|GTOMC_ORYSJ Probable tocopherol O-methyltransferase, chloroplastic OS=Oryza sativa subsp. japonica GN=VTE4 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 113/249 (45%), Gaps = 26/249 (10%)

Query: 32  KKTVATLYDSPEGQIGSVLFGGHMHWGYWD--ESNSKDNFAQGS-----DKLSRIMINKT 84
           K+ +A LYD   G +   ++G HMH G++D  E+ S  +  +       + L+   +   
Sbjct: 75  KEGIAGLYDESSG-VWESIWGEHMHHGFYDAGEAASMSDHRRAQIRMIEESLAFAAVPDD 133

Query: 85  SITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
           +  K +  +D+GCG G S   LA   G +  GIT+S  Q E     A  +GL DKV+F  
Sbjct: 134 AEKKPKSVVDVGCGIGGSSRYLANKYGAQCYGITLSPVQAERGNALAAEQGLSDKVSFQV 193

Query: 145 GDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSILTLTDLPLLSVSKNDN 203
           GDAL  PF +  FD  W  ES  HM +    ++E  RV   G+ + +         +N  
Sbjct: 194 GDALEQPFPDGQFDLVWSMESGEHMPDKRQFVSELARVAAPGARIIIVTW----CHRNLE 249

Query: 204 KFKEYVKK---NIHSNFILVEHYPDLLNKSGF---------ELIKIDDITSHVMPLLVPK 251
             +E +K    N+        + PD  + S +         E I+  D + +V P   P 
Sbjct: 250 PSEESLKPDELNLLKRICDAYYLPDWCSPSDYVKIAESLSLEDIRTADWSENVAPFW-PA 308

Query: 252 LTEATLTYK 260
           + ++ LT+K
Sbjct: 309 VIKSALTWK 317

Involved in the synthesis of tocopherol (vitamin E). Methylates gamma- and delta-tocopherol to form beta- and alpha-tocopherol, respectively.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q9ZSK1|GTOMC_ARATH Tocopherol O-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=VTE4 PE=2 SV=2

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 107/248 (43%), Gaps = 21/248 (8%)

Query: 32  KKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKG-- 89
           +K +A  Y+   G +   ++G HMH G++D  +S      G  +    MI ++    G  
Sbjct: 61  RKGIAEFYNETSG-LWEEIWGDHMHHGFYDPDSSVQLSDSGHKEAQIRMIEESLRFAGVT 119

Query: 90  --------QRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVN 141
                   ++ +D+GCG G S   LA   G    GIT+S  Q + A   A A+ L  K +
Sbjct: 120 DEEEEKKIKKVVDVGCGIGGSSRYLASKFGAECIGITLSPVQAKRANDLAAAQSLAHKAS 179

Query: 142 FLHGDALNLPFDNDSFDGGWFFESIFHMNHSAA-LNEARRVLKSGSILTLTDLPLLSVSK 200
           F   DAL+ PF++  FD  W  ES  HM   A  + E  RV   G  + +      ++S 
Sbjct: 180 FQVADALDQPFEDGKFDLVWSMESGEHMPDKAKFVKELVRVAAPGGRIIIVTWCHRNLSA 239

Query: 201 NDNKFKEY---VKKNIHSNFIL-----VEHYPDLLNKSGFELIKIDDITSHVMPLLVPKL 252
            +   + +   +   I   F L      + Y +LL     + IK  D + +V P   P +
Sbjct: 240 GEEALQPWEQNILDKICKTFYLPAWCSTDDYVNLLQSHSLQDIKCADWSENVAPFW-PAV 298

Query: 253 TEATLTYK 260
               LT+K
Sbjct: 299 IRTALTWK 306

Involved in the synthesis of tocopherol (vitamin E). Methylates gamma- and delta-tocopherol to form beta- and alpha-tocopherol, respectively.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q5EN22|ERG6_MAGO7 Sterol 24-C-methyltransferase OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=ERG6 PE=2 SV=2

 Score = 78.6 bits (192), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 91/183 (49%), Gaps = 10/183 (5%)

Query: 67  DNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQES 126
           + FA    +    + ++  I KG + +DIGCG G    ++AK  G  + GITI+++Q E 
Sbjct: 113 ETFASAITRYEHTLAHRIGIKKGMKVLDIGCGVGGPARQIAKFTGANITGITINEYQVER 172

Query: 127 AMKTAKAEGL--LDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLK 183
           A + A+ EG    +++ F+ GD + LPF+ ++FD  +  E+  H         +   VLK
Sbjct: 173 ARRYAEMEGYGAGEQLKFVQGDFMALPFEKETFDAVYSIEATVHAPKLEDVYKQIFNVLK 232

Query: 184 SGSILTLTDLPLL-SVSKNDNKFKEYVKKNIH-----SNFILVEHYPDLLNKSGFELIKI 237
            G I  L +  +  +  +ND   KE ++  I      +N    +     +  +GFEL++ 
Sbjct: 233 PGGIFGLYEWVMTDAYDENDPHHKE-IRFGIEHGGGIANLQTAQTAIAAIKAAGFELLES 291

Query: 238 DDI 240
           +D+
Sbjct: 292 EDL 294

Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol.

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q83WC3|SDMT_APHHA Sarcosine/dimethylglycine N-methyltransferase OS=Aphanothece halophytica PE=1 SV=1

 Score = 78.2 bits (191), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 4/188 (2%)

Query: 76  LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG 135
           +SRI     +   G + +D+G G+G S   +AK  G  VD + IS  Q E   +  + +G
Sbjct: 53  VSRICDKIKNWPAGTKVLDLGAGYGGSARYMAKHHGFDVDCLNISLVQNERNRQMNQEQG 112

Query: 136 LLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSILTLTDLP 194
           L DK+    G    LPF+N S+D  W  +SI H  N    + EA RVLKSG     TD P
Sbjct: 113 LADKIRVFDGSFEELPFENKSYDVLWSQDSILHSGNRRKVMEEADRVLKSGGDFVFTD-P 171

Query: 195 LLSVSKNDNKFKEYVKKNIHSNFI-LVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLT 253
           + + +  +    E V   IH + +  V  Y  +  + G+E ++ D+ T  ++      L 
Sbjct: 172 MQTDNCPEGVL-EPVLARIHLDSLGSVGFYRQVAEELGWEFVEFDEQTHQLVNHYSRVLQ 230

Query: 254 EATLTYKK 261
           E    Y +
Sbjct: 231 ELEAHYDQ 238

Catalyzes the methylation of sarcosine and dimethylglycine to dimethylglycine and betaine, respectively, with S-adenosylmethionine (AdoMet) acting as the methyl donor.

Aphanothece halophytica (taxid: 72020)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|Q9KJ20|GSDMT_ACTHA Glycine/sarcosine/dimethylglycine N-methyltransferase OS=Actinopolyspora halophila PE=1 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 101/213 (47%), Gaps = 5/213 (2%)

Query: 52  GGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG 111
           G  +H G +     +++ A  S++  + M  K  I+   R +D+G G+G +   LA+  G
Sbjct: 320 GNDIHVGLY--QTPQEDIATASERTVQRMAGKVDISPETRILDLGAGYGGAARYLARTYG 377

Query: 112 CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-N 170
           C V  + +S+ + +   +  +AEGL   +    G   +LP+ +++FD  W  +S  H  +
Sbjct: 378 CHVTCLNLSEVENQRNREITRAEGLEHLIEVTDGSFEDLPYQDNAFDVVWSQDSFLHSGD 437

Query: 171 HSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKS 230
            S  + E  RVLK    +  TD P+ S S   N+    + +    +      Y   L + 
Sbjct: 438 RSRVMEEVTRVLKPKGSVLFTD-PMASDSAKKNELGPILDRLHLDSLGSPGFYRKELTRL 496

Query: 231 GFELIKIDDITSHVMPLLVPKLTEATLTYKKEI 263
           G + I+ +D++ + +P+   ++ E   + + E+
Sbjct: 497 GLQNIEFEDLSEY-LPVHYGRVLEVLESRENEL 528

Catalyzes the methylation of glycine, sarcosine and dimethylglycine to sarcosine, dimethylglycine and betaine, respectively, with S-adenosylmethionine (AdoMet) acting as the methyl donor.

Actinopolyspora halophila (taxid: 1850)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|Q94JS4|SMT3B_ARATH 24-methylenesterol C-methyltransferase 3 OS=Arabidopsis thaliana GN=SMT3 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 11/196 (5%)

Query: 57  WGYWDESNSKDNFAQGSDK-LSRI----MINKTSITKGQRFIDIGCGFGLSGIRLAKAKG 111
           WG+    +   +    SDK  +RI     ++   +  GQ+ +D GCG G     +A    
Sbjct: 87  WGWGQSFHFSPHVPGKSDKDATRIHEEMAVDLIKVKPGQKILDAGCGVGGPMRAIAAHSK 146

Query: 112 CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH 171
            +V GITI+++Q + A    K  GL    N + G+ L +PFD ++FDG +  E+  H   
Sbjct: 147 AQVTGITINEYQVQRAKLHNKKAGLDSLCNVVCGNFLKMPFDENTFDGAYSIEATCHAPK 206

Query: 172 -SAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFIL--VEHYPDL-- 226
                +E  RV+K GS+    +       ++D++  + V + I     L  +  Y D+  
Sbjct: 207 LEEVYSEIFRVMKPGSLFVSYEWVTTEKYRDDDEEHKDVIQGIERGDALPGLRSYADIAV 266

Query: 227 -LNKSGFELIKIDDIT 241
              K GFE++K  D+ 
Sbjct: 267 TAKKVGFEVVKEKDLA 282

Catalyzes the methyl transfer from S-adenosyl-methionine to the methylene group of 24-methylene lophenol to form 24-ethylidene lophenol.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 3

>sp|H2E7T8|SMTL1_BOTBR Sterol methyltransferase-like 1 OS=Botryococcus braunii GN=SMT-1 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 68  NFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESA 127
           NFAQ        + N   I  G + ID+G G G  G  +A   G  V G+TI+ +Q + A
Sbjct: 130 NFAQAQVLHECRIANLARIQPGMKVIDVGTGVGNPGRTIASLTGAHVTGVTINAYQIKRA 189

Query: 128 MKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGS 186
           +   K  GLLD    +  D  ++PF ++SFD  +  E+  H         E  RVLK G+
Sbjct: 190 LHHTKKAGLLDMYKPVQADFTDMPFADESFDAAFAIEATCHAPKLEQVYAEVYRVLKPGA 249

Query: 187 ILTLTDLPLLSVSKN--DNKFKEYVK 210
              + +    +VSK   D K K +V+
Sbjct: 250 YFAVYE----AVSKPNFDPKNKRHVE 271

Unable to convert squalene, botryococcene, cycloartenol, zymosterol or lanosterol to mono-, di-, tri- or tetramethylated derivatives.

Botryococcus braunii (taxid: 38881)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q759S7|ERG6_ASHGO Sterol 24-C-methyltransferase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ERG6 PE=3 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 6/179 (3%)

Query: 67  DNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQES 126
           ++FA    +    + ++  IT G   +D+GCG G     +A+  GCRV G+  + +Q   
Sbjct: 99  ESFAMSMARHEHYLAHRAGITSGDLVLDVGCGVGGPAREIARFTGCRVVGLNNNDYQIMK 158

Query: 127 AMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSG 185
               ++  GL D+V+++ GD +N+ F + +FD  +  E+  H  +      E  RVLK G
Sbjct: 159 GKHYSRKLGLGDQVSYVKGDFMNMDFPDATFDKVYAIEATCHAPSFEGVYGEIYRVLKPG 218

Query: 186 SILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP-----DLLNKSGFELIKIDD 239
            +  + +  +       N     +  +I     + + Y      D L K GFE++  +D
Sbjct: 219 GVFAVYEWVMTENYDETNPEHRRIAYDIELGDGIPKMYSVKVARDALAKVGFEILVDED 277

Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q875K1|ERG6_CLAL4 Sterol 24-C-methyltransferase OS=Clavispora lusitaniae (strain ATCC 42720) GN=ERG6 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 1/127 (0%)

Query: 67  DNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQES 126
           + F Q + +    + +K +I +  R +D+GCG G  G  + +   C + G+  + +Q E 
Sbjct: 101 EAFRQATARHEHFLAHKMNINENMRVLDVGCGVGGPGREICRFTDCTIVGLNNNDYQVER 160

Query: 127 AMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMN-HSAALNEARRVLKSG 185
           A   AK   L DK++++ GD + + F+ +SFD  +  E+  H        +E  +VLK G
Sbjct: 161 AQYYAKKYKLDDKLSYVKGDFMQMDFEPESFDAVYAIEATVHAPVLEGVYSEIYKVLKPG 220

Query: 186 SILTLTD 192
            +  + +
Sbjct: 221 GVFGVYE 227

Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol.

Clavispora lusitaniae (strain ATCC 42720) (taxid: 306902)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
44662942	273	putative methyltransferase [symbiont bac	0.879	0.959	0.6	4e-86
56553470	268	OnnH [symbiont bacterium of Theonella sw	0.875	0.973	0.498	2e-76
394333417	269	O-methyltransferase BonM, partial [Burkh	0.895	0.992	0.503	9e-74
330817036	269	putative methyltransferase [Burkholderia	0.895	0.992	0.496	3e-73
281415840	285	O-methyltrasferase [Nostoc sp. 'Peltiger	0.912	0.954	0.458	2e-71
156740638	278	type 11 methyltransferase [Roseiflexus c	0.812	0.870	0.303	1e-32
148657613	282	type 11 methyltransferase [Roseiflexus s	0.825	0.872	0.315	2e-31
261863836	281	O-methyl transferase [Streptomyces plate	0.627	0.665	0.361	4e-31
316305723	273	SnogM [Streptomyces tacrolimicus]	0.694	0.758	0.358	6e-31
398787729	281	type 11 methyltransferase [Streptomyces	0.627	0.665	0.356	2e-30

>gi|44662942|gb|AAS47560.1| putative methyltransferase [symbiont bacterium of Paederus fuscipes]

 Score =  323 bits (829), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 159/265 (60%), Positives = 203/265 (76%), Gaps = 3/265 (1%)

Query: 35  VATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFID 94
           VATLYDS EGQ+G +LFGGHMHWGYWDE   + NFA  +++L++IMI K  I  GQ+FID
Sbjct: 11  VATLYDSAEGQVGPILFGGHMHWGYWDEVTGEGNFANAAERLAQIMIAKAPIKAGQKFID 70

Query: 95  IGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN 154
           +GCGFG S ++LAKAKGC VDGITISK QQ SA+  A+AE L ++V F+HG ALN+P ++
Sbjct: 71  MGCGFGESALKLAKAKGCFVDGITISKEQQLSAITRAEAEQLQERVRFIHGSALNIPCED 130

Query: 155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIH 214
            S+DGGWFFESIFHM H  AL+EA RVLK GS L LTD  L  + ++   FKE+V ++IH
Sbjct: 131 QSYDGGWFFESIFHMGHRKALHEAARVLKPGSTLLLTD--LPLLPESTEAFKEFVWEHIH 188

Query: 215 SNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPN-PEKS 273
           S F+  E YP+LL ++ FELI+IDDIT +VMP L PKL EA   ++ ++   IPN  EK+
Sbjct: 189 SRFVSREDYPELLAEAEFELIEIDDITDNVMPWLEPKLKEAIELHRPQVEAIIPNDTEKA 248

Query: 274 IDNWLYLFKYMSKNLGYIIVTAKKI 298
           ID+WLYLF+YMS+NLGY+IV AKK+
Sbjct: 249 IDDWLYLFEYMSENLGYMIVMAKKL 273

Source: symbiont bacterium of Paederus fuscipes

Species: symbiont bacterium of Paederus fuscipes

Superkingdom: Bacteria

>gi|56553470|gb|AAV97876.1| OnnH [symbiont bacterium of Theonella swinhoei]

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 132/265 (49%), Positives = 194/265 (73%), Gaps = 4/265 (1%)

Query: 33  KTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRF 92
           + +A LYDS EG +G+++F G +HWGYWDE N+  + A+G+D+L++IMI+KT+I KGQ+F
Sbjct: 7   EEIAELYDSAEGHVGNLIFDGQVHWGYWDERNADASLAEGADRLTQIMIDKTTIEKGQKF 66

Query: 93  IDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF 152
            D+GCG+G   + LAKAKGC +DGIT S  QQ++A+K A+  G+ D +NF+HGDALN+P 
Sbjct: 67  CDLGCGWGGPAVALAKAKGCYIDGITCSGQQQQNAVKKAQELGMDDLLNFIHGDALNMPC 126

Query: 153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKN 212
            + ++DGGWFFESIFHM H  AL EA R+LK G+ L +TD  LLS +  D  FKE+  + 
Sbjct: 127 KDQTYDGGWFFESIFHMGHREALLEANRILKLGATLLITDAYLLSTASED--FKEHTSRR 184

Query: 213 IHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNPEK 272
           +HS F+  + YP +L ++GFE +++ D+T +VM  L  KL +A + Y++EI K +  PE+
Sbjct: 185 VHSRFMPKDIYPGVLEETGFEAVEVLDVTQYVMRPLAQKLKDACVAYREEILKLV--PEE 242

Query: 273 SIDNWLYLFKYMSKNLGYIIVTAKK 297
           +ID+WL+ F+    NLGY++VTA+K
Sbjct: 243 AIDDWLWGFEDFCANLGYLLVTARK 267

Source: symbiont bacterium of Theonella swinhoei

Species: symbiont bacterium of Theonella swinhoei

Superkingdom: Bacteria

>gi|394333417|gb|AFN27486.1| O-methyltransferase BonM, partial [Burkholderia gladioli]

 Score =  283 bits (723), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 136/270 (50%), Positives = 195/270 (72%), Gaps = 3/270 (1%)

Query: 30  KGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKG 89
           K  +  A +YDS +GQ+G +LFGGHMHWGYWD++++  +FA  S++L++++I ++ I  G
Sbjct: 2   KAAERAAEVYDSLDGQVGPILFGGHMHWGYWDQASAGASFAAASERLAQMLIARSPIRAG 61

Query: 90  QRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN 149
           QRF+D+GCGFG SG+ LA+ KGC VDGITISK QQ  A + A+A+GL ++  F+HG AL 
Sbjct: 62  QRFVDLGCGFGRSGMLLAREKGCLVDGITISKVQQIGATQRAEADGLAERARFVHGSALE 121

Query: 150 LPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYV 209
           LPF + ++DGGWFFESIFHM H AAL EA RV+K G+ L LTD  L ++     +F EY 
Sbjct: 122 LPFADGTYDGGWFFESIFHMGHEAALAEAGRVMKPGATLLLTD--LPTLPHTTEQFMEYS 179

Query: 210 KKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPN 269
           +     +++  + +P LL  +GFEL++I DIT++VMP LVPKL EA   +K+EI    P 
Sbjct: 180 RDRFQCHYVPQDAWPKLLKDAGFELVEIQDITANVMPWLVPKLKEAFEAHKQEIRTIAPQ 239

Query: 270 PEKS-IDNWLYLFKYMSKNLGYIIVTAKKI 298
            +++ I  W++LF+YM++NLGYIIV A+K+
Sbjct: 240 ADETFIGRWVHLFRYMAENLGYIIVVARKL 269

Source: Burkholderia gladioli

Species: Burkholderia gladioli

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|330817036|ref|YP_004360741.1| putative methyltransferase [Burkholderia gladioli BSR3] gi|327369429|gb|AEA60785.1| putative methyltransferase [Burkholderia gladioli BSR3]

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 134/270 (49%), Positives = 194/270 (71%), Gaps = 3/270 (1%)

Query: 30  KGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKG 89
           K  +  A +YDS +GQ+G +LFGGHMHWGYWD++++  +FA  +++L++++I ++ I  G
Sbjct: 2   KAAERAAEVYDSLDGQVGPILFGGHMHWGYWDQASAGASFAAAAERLAQMLIARSPIRAG 61

Query: 90  QRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN 149
           QRF+D+GCGFG SG+ LA+ KGC VDGITISK QQ  A + A+A+GL ++  F+HG AL 
Sbjct: 62  QRFVDLGCGFGRSGMLLAREKGCLVDGITISKVQQIGATQRAEADGLAERARFVHGSALE 121

Query: 150 LPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYV 209
           LPF + ++DGGWFFESIFHM H AAL EA RV+K G+ L LTD  L ++     +F EY 
Sbjct: 122 LPFADGTYDGGWFFESIFHMGHEAALAEAGRVMKPGATLLLTD--LPTLPHTTEQFMEYS 179

Query: 210 KKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPN 269
           +     +++  + +P LL  +GFEL++I DIT +VMP LVPKL EA   +++EI    P 
Sbjct: 180 RDRFQCHYVPQDAWPKLLKDAGFELVEIQDITENVMPWLVPKLKEAFEAHEQEIRTIAPQ 239

Query: 270 PEKS-IDNWLYLFKYMSKNLGYIIVTAKKI 298
            +++ I  W++LF+YM++NLGYIIV A+K+
Sbjct: 240 ADETFIGRWVHLFRYMAENLGYIIVVARKL 269

Source: Burkholderia gladioli BSR3

Species: Burkholderia gladioli

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|281415840|gb|ADA69243.1| O-methyltrasferase [Nostoc sp. 'Peltigera membranacea cyanobiont']

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 128/279 (45%), Positives = 192/279 (68%), Gaps = 7/279 (2%)

Query: 22  DIKENKGNKGK---KTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSR 78
           DI+EN         + VA +Y++P GQ G ++F G  HWGYWDE N   + A+ +D+L++
Sbjct: 9   DIEENGATISSPIPEKVAEMYNAPGGQGGHLIFDGQFHWGYWDEKNPDASLAEAADRLTQ 68

Query: 79  IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD 138
           IMI+K+ I++G+RF D+GCG G+  +R+AKAK C VD ITISK+Q + A + A+  G+ D
Sbjct: 69  IMIDKSEISQGERFCDLGCGVGVPAMRIAKAKECFVDAITISKYQYDKAKQLAEEAGMSD 128

Query: 139 KVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSV 198
           +V F+ G+AL +P ++ ++DGGWFFE+IFHM H  AL EA R+LK G+ L + DLP  + 
Sbjct: 129 RVRFIQGNALEMPCEDATYDGGWFFETIFHMGHREALREAYRILKPGATLLIADLP--TR 186

Query: 199 SKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLT 258
           S    +FK + K+ IHS FI  E YP LL+++GF+LI+IDD+T  V+P LVPK+  A   
Sbjct: 187 SNITEEFKTFAKEKIHSVFIPKEDYPGLLDEAGFDLIEIDDVTEFVIPPLVPKVKVAFKQ 246

Query: 259 YKKEIYKSIPNPEKSIDNWLYLFKYMSKNLGYIIVTAKK 297
           Y+ EI + + +  ++I  W+ +F+ M +NLGY++V AK+
Sbjct: 247 YETEILQYVES--QAIGRWVGMFEDMCENLGYMLVKAKR 283

Source: Nostoc sp. 'Peltigera membranacea cyanobiont'

Species: Nostoc sp. 'Peltigera membranacea cyanobiont'

Genus: Nostoc

Family: Nostocaceae

Order: Nostocales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|156740638|ref|YP_001430767.1| type 11 methyltransferase [Roseiflexus castenholzii DSM 13941] gi|156231966|gb|ABU56749.1| Methyltransferase type 11 [Roseiflexus castenholzii DSM 13941]

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 135/267 (50%), Gaps = 25/267 (9%)

Query: 44  GQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSG 103
           G   + L+G ++H GYW   +   +  +  D+L+ ++I K ++T GQ  ID+GCG G   
Sbjct: 22  GPFYATLWGDNIHVGYWTGPDDMSSHVEAQDRLTDLLIEKVNLTTGQTLIDVGCGVGRPA 81

Query: 104 IRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF 163
           IRL++  G  V GIT+S  Q   A   A+  G+ D+V F   DA+ LPFD+++FD  W F
Sbjct: 82  IRLSRHSGASVVGITVSADQVARATMLAEQNGVTDRVRFERADAMALPFDDETFDAAWAF 141

Query: 164 ESIFHM-NHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFIL--- 219
           ES+ HM +    L E  RVL+ G    LTD+        +    +  +  ++ +F+L   
Sbjct: 142 ESLLHMPDRQHVLQEIWRVLRPGGKFALTDV------TEERPLSDEHRALLYGSFMLRSL 195

Query: 220 --VEHYPDLLNKSGFELIKIDDITSH-------VMPLLVPKLTEATLTYKKEIYKSIPNP 270
             +E YP L+  +GF + ++ DI++H       V   L+ K  +    Y  ++  ++   
Sbjct: 196 ETIERYPALVTAAGFVVDEVIDISAHTKRTLQFVSDALIQKRDDIRALYGDDLLATLEQ- 254

Query: 271 EKSIDNWLYLFKYMSKNLGYIIVTAKK 297
                 W  L      +LGY+++ A+K
Sbjct: 255 -----VWPQLAAIQRDHLGYVVLVAQK 276

Source: Roseiflexus castenholzii DSM 13941

Species: Roseiflexus castenholzii

Genus: Roseiflexus

Family: Chloroflexaceae

Order: Chloroflexales

Class: Chloroflexi

Phylum: Chloroflexi

Superkingdom: Bacteria

>gi|148657613|ref|YP_001277818.1| type 11 methyltransferase [Roseiflexus sp. RS-1] gi|148569723|gb|ABQ91868.1| Methyltransferase type 11 [Roseiflexus sp. RS-1]

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 131/263 (49%), Gaps = 17/263 (6%)

Query: 44  GQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSG 103
           G   + L+G + H GYW   +   +  +  D+L+ ++INK ++  GQ  +DIGCG G   
Sbjct: 22  GPFYATLWGDNFHVGYWTGPDDTSSNVEAQDRLTDLLINKVNLAPGQTLLDIGCGVGRPA 81

Query: 104 IRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF 163
           +RL++  G  V GIT+S  Q   A   A+  G+ D+V F   DA+ LPFD+ SFD  W F
Sbjct: 82  VRLSQQTGAAVVGITVSADQVARATALAERSGVADRVRFQRADAMALPFDDASFDAVWAF 141

Query: 164 ESIFHMNHSA-ALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFIL--- 219
           ES+ HM   A  L E  RVL+ G    LTD+        +       +  ++ +F+L   
Sbjct: 142 ESLLHMPDRAHVLREVWRVLRPGGRFILTDV------TEERPLSAEQRALLYGSFLLRSL 195

Query: 220 --VEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNPE--KSID 275
             +E YP L+  +GF +  + DI++     L  +     L  K+E  +++   E   +++
Sbjct: 196 ETIERYPMLVTATGFIVDDVIDISAQTKRTL--QYVSDALMEKRETIRTLYGAELLATLE 253

Query: 276 N-WLYLFKYMSKNLGYIIVTAKK 297
             W  L       LGYI++ A K
Sbjct: 254 QVWPILATIQRDYLGYIVLAAHK 276

Source: Roseiflexus sp. RS-1

Species: Roseiflexus sp. RS-1

Genus: Roseiflexus

Family: Chloroflexaceae

Order: Chloroflexales

Class: Chloroflexi

Phylum: Chloroflexi

Superkingdom: Bacteria

>gi|261863836|gb|ACY01395.1| O-methyl transferase [Streptomyces platensis subsp. rosaceus]

 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/199 (36%), Positives = 103/199 (51%), Gaps = 12/199 (6%)

Query: 52  GGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG 111
           GG +H GYWD  ++     + +D+L+  M ++  I +GQR +D+GCG G   +R+A+  G
Sbjct: 38  GGSLHLGYWDVDDNDTPLVEAADRLTDTMTDRLRIDQGQRVLDVGCGVGQPAMRIARRTG 97

Query: 112 CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-N 170
             V GI ISK Q   A   A+  GL D+V F H DA+ LPF +DSFD     ESIFHM +
Sbjct: 98  AHVTGIAISKDQIARATALAEGAGLSDRVEFRHADAMELPFPDDSFDAAIAIESIFHMPD 157

Query: 171 HSAALNEARRVLKSGSILTLTD------LPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP 224
               L E RRVL+ G  L LTD      +P       D   ++++           E Y 
Sbjct: 158 RGRVLAEIRRVLRPGGRLVLTDFFERGPVPAEKQPAVDRLLRDFIM-----TLARPEDYV 212

Query: 225 DLLNKSGFELIKIDDITSH 243
            +L  +G   +++ DIT  
Sbjct: 213 PMLRDAGLRFVELLDITEQ 231

Source: Streptomyces platensis subsp. rosaceus

Species: Streptomyces platensis

Genus: Streptomyces

Family: Streptomycetaceae

Order: Actinomycetales

Class: Actinobacteria

Phylum: Actinobacteria

Superkingdom: Bacteria

>gi|316305723|gb|ADU56368.1| SnogM [Streptomyces tacrolimicus]

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 116/215 (53%), Gaps = 8/215 (3%)

Query: 32  KKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQR 91
             TVA  Y+     I S   GG +H+GYW       +    S +++ +MI+K S+  GQR
Sbjct: 3   AATVAEYYNQATELI-SADLGGSLHFGYWHGLPENSSMQDASRQMTELMISKLSVGPGQR 61

Query: 92  FIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP 151
            +D+GCG G     L++A G  V G+ IS  Q E A   A+ EG+ DK++F   D ++LP
Sbjct: 62  VLDVGCGAGRPAADLSRATGASVVGVDISPRQIELATGLARTEGMEDKLSFQLADVMSLP 121

Query: 152 FDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSILTLTDL----PLLSVSKNDNKFK 206
           F+ D+ D  W FES+FHM + S  L E  RVL+ G  + + +L    PL    + +   +
Sbjct: 122 FEADTLDAAWLFESMFHMPDQSRVLEEIARVLRPGGRVAIANLVQRVPL--TEEQNAALE 179

Query: 207 EYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDIT 241
           EY K    +  + +E YP LL+ SG  L ++ DI+
Sbjct: 180 EYWKVGNVAALLPLEDYPKLLSDSGLVLTELADIS 214

Source: Streptomyces tacrolimicus

Species: Streptomyces tacrolimicus

Genus: Streptomyces

Family: Streptomycetaceae

Order: Actinomycetales

Class: Actinobacteria

Phylum: Actinobacteria

Superkingdom: Bacteria

>gi|398787729|ref|ZP_10550034.1| type 11 methyltransferase [Streptomyces auratus AGR0001] gi|396992692|gb|EJJ03790.1| type 11 methyltransferase [Streptomyces auratus AGR0001]

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 103/199 (51%), Gaps = 12/199 (6%)

Query: 52  GGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG 111
           GG +H GYWD  ++     + +D+L+  M ++  I +GQR +D+GCG G   +R+A+  G
Sbjct: 38  GGSLHLGYWDVDDNDTPLVEAADRLTDTMTDRLRIDRGQRVLDVGCGVGQPAMRIARRTG 97

Query: 112 CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-N 170
             V GI ISK Q   A   A+  GL D+V F H DA+ LPF ++SFD     ESIFHM +
Sbjct: 98  AHVTGIAISKDQIARATALAEGAGLGDRVEFRHADAMELPFPDNSFDAAIAIESIFHMPD 157

Query: 171 HSAALNEARRVLKSGSILTLTD------LPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP 224
               L E RRVL+ G  L LTD      +P       D   ++++           E Y 
Sbjct: 158 RGRVLAEIRRVLRPGGRLVLTDFFERGPIPAEKQPAVDRLLRDFIM-----TLARPEDYV 212

Query: 225 DLLNKSGFELIKIDDITSH 243
            +L  +G   +++ DIT  
Sbjct: 213 PMLRDAGLRFVELLDITEQ 231

Source: Streptomyces auratus AGR0001

Species: Streptomyces auratus

Genus: Streptomyces

Family: Streptomycetaceae

Order: Actinomycetales

Class: Actinobacteria

Phylum: Actinobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
UNIPROTKB|Q83WC3	277	Q83WC3 "Sarcosine/dimethylglyc	0.647	0.696	0.296	4.7e-16
DICTYBASE|DDB_G0275359	462	DDB_G0275359 [Dictyostelium di	0.446	0.287	0.323	1.6e-15
TAIR|locus:2010921	348	G-TMT "gamma-tocopherol methyl	0.751	0.643	0.285	1.8e-15
UNIPROTKB|G5EGY9	380	MGCH7_ch7g116 "Sterol 24-C-met	0.617	0.484	0.264	4.3e-15
UNIPROTKB|Q5EN22	390	ERG6 "Sterol 24-C-methyltransf	0.590	0.451	0.279	6e-15
UNIPROTKB|Q9KJ20	565	Q9KJ20 "Glycine/sarcosine/dime	0.697	0.368	0.256	6.8e-15
UNIPROTKB|G4N2S6	340	MGG_04901 "Methyltransferase"	0.285	0.25	0.402	2.8e-13
ASPGD|ASPL0000068274	377	AN7146 [Emericella nidulans (t	0.577	0.456	0.264	3.2e-13
TAIR|locus:2199777	359	SMT3 "sterol methyltransferase	0.614	0.509	0.290	6.1e-12
TIGR_CMR|CPS_3306	273	CPS_3306 "methyltransferase, U	0.577	0.630	0.267	7.8e-11

UNIPROTKB|Q83WC3 Q83WC3 "Sarcosine/dimethylglycine N-methyltransferase" [Aphanothece halophytica (taxid:72020)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 59/199 (29%), Positives = 97/199 (48%)

Query:    50 LFGGH-MHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAK 108
             ++GG  +H G ++  + +  +      +SRI     +   G + +D+G G+G S   +AK
Sbjct:    27 IWGGEDLHIGIYNTPD-EPIYDASVRTVSRICDKIKNWPAGTKVLDLGAGYGGSARYMAK 85

Query:   109 AKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFH 168
               G  VD + IS  Q E   +  + +GL DK+    G    LPF+N S+D  W  +SI H
Sbjct:    86 HHGFDVDCLNISLVQNERNRQMNQEQGLADKIRVFDGSFEELPFENKSYDVLWSQDSILH 145

Query:   169 M-NHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFI-LVEHYPDL 226
               N    + EA RVLKSG     TD P+ + +  +    E V   IH + +  V  Y  +
Sbjct:   146 SGNRRKVMEEADRVLKSGGDFVFTD-PMQTDNCPEGVL-EPVLARIHLDSLGSVGFYRQV 203

Query:   227 LNKSGFELIKIDDITSHVM 245
               + G+E ++ D+ T  ++
Sbjct:   204 AEELGWEFVEFDEQTHQLV 222

GO:0019286 "glycine betaine biosynthetic process from glycine" evidence=IDA

GO:0032259 "methylation" evidence=IDA

GO:0052729 "dimethylglycine N-methyltransferase activity" evidence=IDA

DICTYBASE|DDB_G0275359 DDB_G0275359 [Dictyostelium discoideum (taxid:44689)]

 Score = 202 (76.2 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 44/136 (32%), Positives = 72/136 (52%)

Query:    51 FGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK 110
             +G H H+  +      +       +L   + +   ITK    +D+GCG G   + + +  
Sbjct:   204 WGNHFHFAPF--KTDTEPLETAVKRLEHSVADSARITKDSLVLDVGCGVGGPTLEICQYT 261

Query:   111 GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM- 169
             GC++ G+ I+K Q   A + AK  G+ D+ +F HGDA+ +P+ +++FD   FFES  HM 
Sbjct:   262 GCKIRGLNINKKQVGIATQRAKDLGVSDRASFDHGDAMKMPYPDNTFDVVTFFESTCHMP 321

Query:   170 NHSAALNEARRVLKSG 185
             +  A + E  RVLK G
Sbjct:   322 DKQAFIKECYRVLKPG 337

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2010921 G-TMT "gamma-tocopherol methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.8e-15, P = 1.8e-15
 Identities = 70/245 (28%), Positives = 108/245 (44%)

Query:    35 VATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKT----SIT--- 87
             +A  Y+   G +   ++G HMH G++D  +S      G  +    MI ++     +T   
Sbjct:    64 IAEFYNETSG-LWEEIWGDHMHHGFYDPDSSVQLSDSGHKEAQIRMIEESLRFAGVTDEE 122

Query:    88 ---KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
                K ++ +D+GCG G S   LA   G    GIT+S  Q + A   A A+ L  K +F  
Sbjct:   123 EEKKIKKVVDVGCGIGGSSRYLASKFGAECIGITLSPVQAKRANDLAAAQSLAHKASFQV 182

Query:   145 GDALNLPFDNDSFDGGWFFESIFHMNHSAA-LNEARRVLKSGS---ILTLTDLPLLSVSK 200
              DAL+ PF++  FD  W  ES  HM   A  + E  RV   G    I+T     L +  +
Sbjct:   183 ADALDQPFEDGKFDLVWSMESGEHMPDKAKFVKELVRVAAPGGRIIIVTWCHRNLSAGEE 242

Query:   201 NDNKFKEYVKKNIHSNFIL-----VEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEA 255
                 +++ +   I   F L      + Y +LL     + IK  D + +V P   P +   
Sbjct:   243 ALQPWEQNILDKICKTFYLPAWCSTDDYVNLLQSHSLQDIKCADWSENVAPFW-PAVIRT 301

Query:   256 TLTYK 260
              LT+K
Sbjct:   302 ALTWK 306

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS

GO:0050342 "tocopherol O-methyltransferase activity" evidence=IDA

GO:0010189 "vitamin E biosynthetic process" evidence=IMP

UNIPROTKB|G5EGY9 MGCH7_ch7g116 "Sterol 24-C-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 196 (74.1 bits), Expect = 4.3e-15, P = 4.3e-15
 Identities = 51/193 (26%), Positives = 89/193 (46%)

Query:    57 WG---YWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR 113
             WG   ++   +  ++F Q   +    + ++  I +G   +D+GCG G     +AK  GC 
Sbjct:    95 WGQSFHFCRFSHNESFYQAIARHEHYLAHQIGIKEGMTVLDVGCGVGGPAREIAKFTGCN 154

Query:   114 VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-S 172
             V G+  + +Q + A   AK E L  ++ F+ GD + + F ++SFD  +  E+  H     
Sbjct:   155 VVGLNNNDYQIDRATHYAKQEKLDSQLQFVKGDFMQMSFPDESFDAVYAIEATVHAPKLE 214

Query:   173 AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIH-----SNFILVEHYPDLL 227
                +E  RVLK G    + +  +     NDN     ++  I      SN + +      +
Sbjct:   215 GVYSEIFRVLKPGGTFGVYEWLMTDDYDNDNLHHRDIRLKIELGNGISNMVPISEGEAAM 274

Query:   228 NKSGFELIKIDDI 240
               +GFE+IK DD+
Sbjct:   275 RAAGFEIIKTDDL 287

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5EN22 ERG6 "Sterol 24-C-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 195 (73.7 bits), Expect = 6.0e-15, P = 6.0e-15
 Identities = 52/186 (27%), Positives = 92/186 (49%)

Query:    67 DNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQES 126
             + FA    +    + ++  I KG + +DIGCG G    ++AK  G  + GITI+++Q E 
Sbjct:   113 ETFASAITRYEHTLAHRIGIKKGMKVLDIGCGVGGPARQIAKFTGANITGITINEYQVER 172

Query:   127 AMKTAKAEGLL--DKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLK 183
             A + A+ EG    +++ F+ GD + LPF+ ++FD  +  E+  H         +   VLK
Sbjct:   173 ARRYAEMEGYGAGEQLKFVQGDFMALPFEKETFDAVYSIEATVHAPKLEDVYKQIFNVLK 232

Query:   184 SGSILTLTDLPLLSV-SKNDNKFKEYVKKNI-H----SNFILVEHYPDLLNKSGFELIKI 237
              G I  L +  +     +ND   KE ++  I H    +N    +     +  +GFEL++ 
Sbjct:   233 PGGIFGLYEWVMTDAYDENDPHHKE-IRFGIEHGGGIANLQTAQTAIAAIKAAGFELLES 291

Query:   238 DDITSH 243
             +D+  +
Sbjct:   292 EDLADN 297

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q9KJ20 Q9KJ20 "Glycine/sarcosine/dimethylglycine N-methyltransferase" [Actinopolyspora halophila (taxid:1850)]

 Score = 198 (74.8 bits), Expect = 6.8e-15, P = 6.8e-15
 Identities = 56/218 (25%), Positives = 111/218 (50%)

Query:    50 LFGGH-MHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAK 108
             ++GG+ +H G +     +++ A  S++  + M  K  I+   R +D+G G+G +   LA+
Sbjct:   317 VWGGNDIHVGLYQ--TPQEDIATASERTVQRMAGKVDISPETRILDLGAGYGGAARYLAR 374

Query:   109 AKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFH 168
               GC V  + +S+ + +   +  +AEGL   +    G   +LP+ +++FD  W  +S  H
Sbjct:   375 TYGCHVTCLNLSEVENQRNREITRAEGLEHLIEVTDGSFEDLPYQDNAFDVVWSQDSFLH 434

Query:   169 M-NHSAALNEARRVLK-SGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFI-LVEHYPD 225
               + S  + E  RVLK  GS+L  TD P+ S S   N+    + + +H + +     Y  
Sbjct:   435 SGDRSRVMEEVTRVLKPKGSVL-FTD-PMASDSAKKNELGPILDR-LHLDSLGSPGFYRK 491

Query:   226 LLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEI 263
              L + G + I+ +D++ + +P+   ++ E   + + E+
Sbjct:   492 ELTRLGLQNIEFEDLSEY-LPVHYGRVLEVLESRENEL 528

GO:0019286 "glycine betaine biosynthetic process from glycine" evidence=IDA

GO:0032259 "methylation" evidence=IDA

GO:0052729 "dimethylglycine N-methyltransferase activity" evidence=IDA

GO:0052730 "sarcosine N-methyltransferase activity" evidence=IDA

UNIPROTKB|G4N2S6 MGG_04901 "Methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 157 (60.3 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
 Identities = 35/87 (40%), Positives = 47/87 (54%)

Query:    50 LFGGHMHWGYW--DESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLA 107
             L+G H+H GYW  DES +KD        L  +++  + I +G   +D+GCG G +   LA
Sbjct:    53 LWGQHVHHGYWPTDESKAKDTKEVAQTNLIDLLLEISKIPEGGSVLDVGCGLGGTTRHLA 112

Query:   108 KAKGCRVDGITISKFQQESAMKTAKAE 134
                GC V GITIS  Q E A +  K E
Sbjct:   113 SKLGCSVTGITISGKQVEIAKRLTKTE 139

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000068274 AN7146 [Emericella nidulans (taxid:162425)]

 Score = 188 (71.2 bits), Expect = 3.2e-13, P = 3.2e-13
 Identities = 47/178 (26%), Positives = 83/178 (46%)

Query:    69 FAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAM 128
             F Q   +    + ++  I  G + +D+GCG G     + K     V G+  + +Q + A 
Sbjct:   108 FYQAIARHEHYLAHQMGIKPGMKVLDVGCGVGGPAREIVKFTDAHVTGLNNNDYQIQRAT 167

Query:   129 KTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAAL-NEARRVLKSGSI 187
             + A+ EGL  K+NF+ GD + + F ++SFD  +  E+  H    A +  E  RVLK G +
Sbjct:   168 RYAEREGLSHKLNFVKGDFMQMQFPDNSFDAVYAIEATVHAPELAGVYKEIMRVLKPGGV 227

Query:   188 LTLTDLPLLSVSKNDNKFKEYVKKNIH-----SNFILVEHYPDLLNKSGFELIKIDDI 240
               + +  +     NDN     ++  I      SN + V      + ++G EL+  +D+
Sbjct:   228 FGVYEWLMTDAYDNDNPEHRKIRLGIEQGDGISNMVKVSEGLAAIKEAGLELLHHEDL 285

GO:0016125 "sterol metabolic process" evidence=RCA

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=IEA;RCA

GO:0005634 "nucleus" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IEA

GO:0071210 "protein insertion into membrane raft" evidence=IEA

GO:0006696 "ergosterol biosynthetic process" evidence=IEA

TAIR|locus:2199777 SMT3 "sterol methyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 6.1e-12, P = 6.1e-12
 Identities = 57/196 (29%), Positives = 92/196 (46%)

Query:    57 WGYWDESNSKDNFAQG-SDK-LSRI----MINKTSITKGQRFIDIGCGFGLSGIRLAKAK 110
             WG W +S        G SDK  +RI     ++   +  GQ+ +D GCG G     +A   
Sbjct:    87 WG-WGQSFHFSPHVPGKSDKDATRIHEEMAVDLIKVKPGQKILDAGCGVGGPMRAIAAHS 145

Query:   111 GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMN 170
               +V GITI+++Q + A    K  GL    N + G+ L +PFD ++FDG +  E+  H  
Sbjct:   146 KAQVTGITINEYQVQRAKLHNKKAGLDSLCNVVCGNFLKMPFDENTFDGAYSIEATCHAP 205

Query:   171 H-SAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFIL--VEHYPDLL 227
                   +E  RV+K GS+    +       ++D++  + V + I     L  +  Y D+ 
Sbjct:   206 KLEEVYSEIFRVMKPGSLFVSYEWVTTEKYRDDDEEHKDVIQGIERGDALPGLRSYADIA 265

Query:   228 ---NKSGFELIKIDDI 240
                 K GFE++K  D+
Sbjct:   266 VTAKKVGFEVVKEKDL 281

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA;TAS

GO:0016126 "sterol biosynthetic process" evidence=RCA;TAS

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=TAS

TIGR_CMR|CPS_3306 CPS_3306 "methyltransferase, UbiE/COQ5 family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 167 (63.8 bits), Expect = 7.8e-11, P = 7.8e-11
 Identities = 47/176 (26%), Positives = 83/176 (47%)

Query:    61 DESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITIS 120
             D+    D F    D  ++ +I   + T     +D+GCG G S  RL+   GC V GI +S
Sbjct:    34 DDLQPVDEFHIRGDIATKELIELGNFTPDMHILDVGCGVGGSTRRLSHETGCHVTGIDLS 93

Query:   121 KFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAA-LNEAR 179
                 ++A +  +   +  +V F  G AL LP+ +++FDG W  +   ++      L E  
Sbjct:    94 DEYIDAAERLTQLLNMQARVKFNVGSALELPYADNTFDGAWSIQMNMNVEDKLGWLKEMY 153

Query:   180 RVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILV-EHYPDLLNKSGFEL 234
             RVLK G+   L ++      +    F     ++   +F++  E + DL+  +GF++
Sbjct:   154 RVLKPGARAVLYEV--CGHEEKTIYFPVPWAQDSSMSFLIPKEAFRDLIASTGFKI 207

GO:0008152 "metabolic process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	298
PLN02244	340	PLN02244, PLN02244, tocopherol O-methyltransferase	4e-29
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	3e-19
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	8e-18
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	5e-14
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	6e-14
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	2e-13
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	1e-12
COG2230	283	COG2230, Cfa, Cyclopropane fatty acid synthase and	2e-12
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	1e-11
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	1e-10
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	2e-10
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	3e-10
PRK11705	383	PRK11705, PRK11705, cyclopropane fatty acyl phosph	5e-10
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	4e-09
pfam02353	273	pfam02353, CMAS, Mycolic acid cyclopropane synthet	5e-09
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	6e-09
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	9e-09
smart00828	224	smart00828, PKS_MT, Methyltransferase in polyketid	3e-08
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	8e-08
TIGR02752	231	TIGR02752, MenG_heptapren, demethylmenaquinone met	1e-07
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	2e-07
TIGR02021	219	TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m	6e-07
PLN02233	261	PLN02233, PLN02233, ubiquinone biosynthesis methyl	7e-07
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	2e-06
PRK07580	230	PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr	3e-06
PTZ00098	263	PTZ00098, PTZ00098, phosphoethanolamine N-methyltr	4e-06
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	4e-06
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	9e-06
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	3e-05
TIGR04345	242	TIGR04345, ovoA_Cterm, putative 4-mercaptohistidin	5e-05
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	7e-05
pfam01170	172	pfam01170, UPF0020, Putative RNA methylase family	1e-04
PLN02336	475	PLN02336, PLN02336, phosphoethanolamine N-methyltr	1e-04
COG1041	347	COG1041, COG1041, Predicted DNA modification methy	2e-04
PRK10258	251	PRK10258, PRK10258, biotin biosynthesis protein Bi	3e-04
pfam13578	105	pfam13578, Methyltransf_24, Methyltransferase doma	9e-04
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	0.001
TIGR01177	329	TIGR01177, TIGR01177, TIGR01177 family protein	0.001
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	0.002
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	0.002
PLN02232	160	PLN02232, PLN02232, ubiquinone biosynthesis methyl	0.002
COG4976	287	COG4976, COG4976, Predicted methyltransferase (con	0.002
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	0.004

>gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase

 Score =  113 bits (284), Expect = 4e-29
 Identities = 80/250 (32%), Positives = 114/250 (45%), Gaps = 30/250 (12%)

Query: 32  KKTVATLYDSPEGQIGSVLF----GGHMHWGYWDESNSKDNFAQGS-----DKLSRIMIN 82
           K+ +A  YD       S ++    G HMH GY+D   S+ +  Q       + L+   + 
Sbjct: 58  KEGIAEFYDE-----SSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVP 112

Query: 83  KTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNF 142
                + +R +D+GCG G S   LA+  G  V GIT+S  Q   A   A A+GL DKV+F
Sbjct: 113 DDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSF 172

Query: 143 LHGDALNLPFDNDSFDGGWFFESIFHMNHSAAL-NEARRVLK-SGSILTLT----DL-PL 195
              DALN PF++  FD  W  ES  HM        E  RV    G I+ +T    DL P 
Sbjct: 173 QVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPG 232

Query: 196 LSVSKNDNKFKEYVKKNIHSNFIL-----VEHYPDLLNKSGFELIKIDDITSHVMPLLVP 250
            +  K D   ++ + K I + + L        Y  L    G + IK +D + HV P   P
Sbjct: 233 ETSLKPDE--QKLLDK-ICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAPFW-P 288

Query: 251 KLTEATLTYK 260
            + ++ LT K
Sbjct: 289 AVIKSALTLK 298

Length = 340

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 80.4 bits (199), Expect = 3e-19
 Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 93  IDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF 152
           +D+GCG GL    LA+  G RV G+ +S       +  A+         F+ GDA +LPF
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLS----PEMLALARKRA---PRKFVVGDAEDLPF 53

Query: 153 DNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSIL 188
            ++SFD       + H+ +   AL E  RVLK G  L
Sbjct: 54  PDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKL 90

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 77.1 bits (190), Expect = 8e-18
 Identities = 43/106 (40%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 91  RFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150
           R +D+GCG G   + LA   G RV G+ IS    E A K A A  L D V  L GDA  L
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAALLADNVEVLKGDAEEL 59

Query: 151 PFDND-SFDG--GWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193
           P + D SFD             + +  L EARR+LK G +L LT +
Sbjct: 60  PPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLV 105

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 67.8 bits (166), Expect = 5e-14
 Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 7/152 (4%)

Query: 86  ITKGQRFIDIGCGFGLSGIRLAK--AKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL 143
           +  G + +D+GCG G     LA+    G  V GI IS+   E A + AK  G  + V F+
Sbjct: 1   LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLG-YENVEFI 59

Query: 144 HGDALNLP---FDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSILTLTDLPLLSVS 199
            GD   LP    +++SFD     E + H+ +    L E  RVLK G +L ++D  LLS  
Sbjct: 60  QGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLSEL 119

Query: 200 KNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG 231
               +  E +   +    I  +    +L ++G
Sbjct: 120 PALLEDLERLYAGVLEGAIGKKKLLTILREAG 151

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 69.6 bits (171), Expect = 6e-14
 Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 15/147 (10%)

Query: 60  WDESNSKDNFAQGSDKLSRIM------------INKTSITKGQRFIDIGCGFGLSGIRLA 107
                  D  A+  D ++ +M            I+   I  G + +D+ CG G   + LA
Sbjct: 11  EKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLA 70

Query: 108 KAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI 166
           K+ G   V G+ IS+   E A +  K +G+ + V F+ GDA NLPF ++SFD       +
Sbjct: 71  KSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGL 129

Query: 167 FHMNH-SAALNEARRVLKSGSILTLTD 192
            ++     AL E  RVLK G  L + +
Sbjct: 130 RNVTDIDKALKEMYRVLKPGGRLLVLE 156

Length = 238

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 86  ITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL 143
           +  G R +D+GCG G     LA+      RV GI  S+     A    +A GL   V F+
Sbjct: 17  VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALA--KERAAGLGPNVEFV 74

Query: 144 HGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSG 185
            GDA  LPF + SFD       + H+ + + AL E  RVL+ G
Sbjct: 75  RGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPG 117

Length = 241

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 65.9 bits (162), Expect = 1e-12
 Identities = 38/121 (31%), Positives = 51/121 (42%), Gaps = 17/121 (14%)

Query: 78  RIMINKTSITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEG 135
           R  I    +  G + +D+ CG G   I LAKA  K   V G+  S+       +  +  G
Sbjct: 41  RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG 100

Query: 136 LLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM--------NHSAALNEARRVLKSGSI 187
           L   V F+ GDA  LPF ++SFD          +        +   AL E  RVLK G  
Sbjct: 101 LSGNVEFVQGDAEALPFPDNSFD-------AVTIAFGLRNVPDIDKALREMYRVLKPGGR 153

Query: 188 L 188
           L
Sbjct: 154 L 154

Length = 239

>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 47/176 (26%), Positives = 67/176 (38%), Gaps = 28/176 (15%)

Query: 75  KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE 134
           KL  I+  K  +  G   +DIGCG+G   I  A+  G  V G+T+S+ Q   A K   A 
Sbjct: 60  KLDLIL-EKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAAR 118

Query: 135 GLLDKVNFLHGDALNLPFDNDSFD-----GGWFFESIFHMNHSAALNEARRVLKSGSILT 189
           GL D V     D        + FD     G   FE +   N+     +   +LK G  + 
Sbjct: 119 GLEDNVEVRLQD---YRDFEEPFDRIVSVG--MFEHVGKENYDDFFKKVYALLKPGGRML 173

Query: 190 LTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVM 245
           L  +        D +F+ +        FI    +P      G EL  I +I     
Sbjct: 174 LHSIT-----GPDQEFRRFPD------FIDKYIFP------GGELPSISEILELAS 212

Length = 283

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 88  KGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD 146
            G R +DIGCG G   I LA+   G RV G+ +S    E A + AK   L  ++ F+ GD
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKL-ALGPRITFVQGD 59

Query: 147 ALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192
           A +     + FD    F      +    L+    +LK G  L L  
Sbjct: 60  APDALDLLEGFD--AVFIGGGGGDLLELLDALASLLKPGGRLVLNA 103

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 34/176 (19%)

Query: 20  NKDIKENKGNKGKKTVATLYDSPEGQIGSVL-FGGHMHWGYWDESNSKDNFAQGSDKLSR 78
              +KE +      +VA+ YD     +  V+ FG H  W                D   +
Sbjct: 1   MTVLKEQRVGDVFSSVASKYD----LMNDVISFGIHRLW---------------KDFTMK 41

Query: 79  IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR--VDGITISKFQQESAMKTAKAEGL 136
            M  K     G +F+D+  G G     L+ + G    V G+ I++   +   K AK EG 
Sbjct: 42  CMGVKR----GNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGK 97

Query: 137 LDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM----NHSAALNEARRVLKSGSIL 188
            + + FL G+A  LPF++DSFD        F +    ++   L EA RVLK G  +
Sbjct: 98  YN-IEFLQGNAEELPFEDDSFD---IVTISFGLRNFPDYLKVLKEAFRVLKPGGRV 149

Length = 233

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 17/151 (11%)

Query: 86  ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG 145
           +  G R +DIGCG G+  +RL + +G  V G+  S               +L    F   
Sbjct: 20  LKPGGRVLDIGCGTGIL-LRLLRERGFDVTGVDPS------------PAAVLIFSLFDAP 66

Query: 146 DALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNK 204
           D   L      +D    FE + H+ +  A L + R +LK G +L ++       ++    
Sbjct: 67  DPAVL---AGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVLLISTPLADDDARLFAN 123

Query: 205 FKEYVKKNIHSNFILVEHYPDLLNKSGFELI 235
           +     +N H +F   E    LL K+GFEL+
Sbjct: 124 WHYLRPRNTHISFYSEESLKRLLEKAGFELV 154

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 59.1 bits (140), Expect = 3e-10
 Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 5/162 (3%)

Query: 88  KGQRFIDIGCGFG-LSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD 146
            G   +DIGCG G L+ +     +G  V G+ +S      A   A+  GL   V+F+  D
Sbjct: 48  GGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVAD 106

Query: 147 ALNLPF---DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDN 203
           AL       D+ SFD       +  +  + AL E  RVLK G  L L+DL    + +   
Sbjct: 107 ALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRL 166

Query: 204 KFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVM 245
                    +     ++     LL     +L ++  +   + 
Sbjct: 167 AALLGFGDPVLERGDILLELEALLRLELLDLEELLGLLGELE 208

Length = 257

>gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase; Provisional

 Score = 59.5 bits (145), Expect = 5e-10
 Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 28/163 (17%)

Query: 39  YDSPEGQIGSVLF----GGHMHW--GYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRF 92
           YD     +G+ LF       M +  GYW ++++ +  AQ   KL  I   K  +  G R 
Sbjct: 120 YD-----LGNDLFEAMLDPRMQYSCGYWKDADTLEE-AQ-EAKLDLI-CRKLQLKPGMRV 171

Query: 93  IDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF 152
           +DIGCG+G      A+  G  V G+TIS  QQ+ A +  +  GL   V     D  +L  
Sbjct: 172 LDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQE--RCAGL--PVEIRLQDYRDL-- 225

Query: 153 DNDSFD-----GGWFFESIFHMNHSAALNEARRVLKSGSILTL 190
            N  FD     G   FE +   N+       RR LK   +  L
Sbjct: 226 -NGQFDRIVSVG--MFEHVGPKNYRTYFEVVRRCLKPDGLFLL 265

Length = 383

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 20/138 (14%)

Query: 67  DNFAQGSDKLSRIM------------INKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRV 114
           D  A   D L+ ++            +    + KGQ+ +D+ CG G   I LAK+   R 
Sbjct: 6   DRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRG 65

Query: 115 DGITISKFQQESAMKTAKAEGLLD-KVNFLHGDALNLPFDNDSFDG---GWFFESIFHMN 170
             +T   F  E  ++ AK +  L   + F+  DA  LPF+++SFD     +   ++  + 
Sbjct: 66  K-VTGVDFSSE-MLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQ 123

Query: 171 HSAALNEARRVLKSGSIL 188
              AL E  RVLK G  L
Sbjct: 124 --KALREMYRVLKPGGRL 139

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 6/123 (4%)

Query: 70  AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
           AQ   KL  I+ +K  +  G   +DIGCG+G    R A+     V G+T+SK Q + A +
Sbjct: 46  AQ-QAKLDLIL-DKLGLKPGMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYKHARQ 103

Query: 130 TAKAEGLLDKVNFLHGD--ALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSI 187
              AEGL  KV  L  D    + PFD     G   FE + H N+     +   +L  G +
Sbjct: 104 RVAAEGLQRKVEVLLQDYRDFDEPFDRIVSVG--MFEHVGHENYDTFFKKLYNLLPPGGL 161

Query: 188 LTL 190
           + L
Sbjct: 162 MLL 164

This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. Length = 273

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 92  FIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP 151
            +D+GCG G     LA+A    V G+ ISK   E A +  + +G   KV F+  DA +LP
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGP--KVRFVVADARDLP 58

Query: 152 FDNDSFD 158
           F+  SFD
Sbjct: 59  FEEGSFD 65

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 52.4 bits (126), Expect = 9e-09
 Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 21/118 (17%)

Query: 89  GQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA 147
           G R +D G G G   +  A+A    RV G+ +       A +     GL  +V  + GDA
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60

Query: 148 L---------------NLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTL 190
                           N P+   + D     +      +   L  A R+LK G +L +
Sbjct: 61  RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDL-----YDRFLAAALRLLKPGGVLVV 113

This family contains methyltransferase domains. Length = 117

>gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS) enzymes

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 12/163 (7%)

Query: 91  RFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN 149
           R +D GCG+G   I LA+     ++ G TIS  Q E   +  +A GL  ++   + D+  
Sbjct: 2   RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK 61

Query: 150 LPFDNDSFDGGWFFESIFHMNHSAAL--NEARRVLKSGSILTLTDLPLLSVSKNDNKFKE 207
            PF  D++D  + FE I H+     L  N +R  LK G  L L D     +S  ++    
Sbjct: 62  DPFP-DTYDLVFGFEVIHHIKDKMDLFSNISRH-LKDGGHLVLADFIANLLSAIEH---- 115

Query: 208 YVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVP 250
              +   S  +  E + +LL ++   +++  D +  +   L  
Sbjct: 116 ---EETTSYLVTREEWAELLARNNLRVVEGVDASLEIANFLYD 155

Length = 224

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 50.6 bits (122), Expect = 8e-08
 Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 22/136 (16%)

Query: 69  FAQGS-DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQES 126
           F+ G  D  SR++++      G + +D+GCG+G+ G  LAK      V  + I+    ES
Sbjct: 11  FSHGRLDIGSRLLLSHLPKPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALES 70

Query: 127 AMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI-----FH----MNHSAALN- 176
           A     A G L+       D  +   +   FD       I     FH     ++  A   
Sbjct: 71  ARANLAANG-LENGEVFWSDLYS-AVEPGKFD------LIISNPPFHAGKATDYDVAQRF 122

Query: 177 --EARRVLKSGSILTL 190
              A R LK G  L +
Sbjct: 123 IAGAARHLKPGGELWI 138

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 19/136 (13%)

Query: 60  WDESNSKDNFAQGS---DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRV 114
           +D  NS  +F +         + M    ++  G   +D+ CG     I LA+A G    V
Sbjct: 18  YDRMNSVISFQRHKKWRKDTMKRM----NVQAGTSALDVCCGTADWSIALAEAVGPEGHV 73

Query: 115 DGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI-FHM---- 169
            G+  S+       +  K  GL   V  +HG+A+ LPFD++SFD    + +I F +    
Sbjct: 74  IGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFD----YVTIGFGLRNVP 128

Query: 170 NHSAALNEARRVLKSG 185
           ++   L E  RV+K G
Sbjct: 129 DYMQVLREMYRVVKPG 144

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 6/100 (6%)

Query: 93  IDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLD--KVNFLHGDALN 149
           +DIGCG G     L +A  G    G+ IS    E+A +   A GLLD  +V     DA++
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 150 LPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSIL 188
           L     SFD       + H+    A L   RR+LK G +L
Sbjct: 61  LDP--GSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 14/112 (12%)

Query: 80  MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK 139
            + K  + KG+R +D GCG GL  I LAK +G  V  + IS+   + A   A+   +   
Sbjct: 48  WLPKDPL-KGKRVLDAGCGTGLLSIELAK-RGAIVKAVDISEQMVQMARNRAQGRDVAGN 105

Query: 140 VNFLHGDALNLPFDNDSFDGGWFFESIFH---------MNHSAALNEARRVL 182
           V F   D L+L      FD     + + H         + H A+L + R + 
Sbjct: 106 VEFEVNDLLSL---CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIF 154

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219

>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase

 Score = 49.1 bits (117), Expect = 7e-07
 Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 9/122 (7%)

Query: 78  RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC--RVDGITISKFQQESAM--KTAKA 133
           R+ ++ +    G R +D+ CG G     L++  G   +V G+  S  Q   A   +  KA
Sbjct: 63  RMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKA 122

Query: 134 EGLLDKVNFLHGDALNLPFDNDSFDG---GWFFESIFHMNHSAALNEARRVLKSGSILTL 190
           +     + ++ GDA +LPFD+  FD    G+   ++  ++   A+ E  RVLK GS +++
Sbjct: 123 KSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNV--VDRLKAMQEMYRVLKPGSRVSI 180

Query: 191 TD 192
            D
Sbjct: 181 LD 182

Length = 261

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 77  SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL 136
           S ++       KG R +++G G G+  I  AK  G +V G+ I+ +  E A   AK   +
Sbjct: 12  SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAK-NGKKVVGVDINPYAVECAKCNAKLNNI 70

Query: 137 -LDKVNFLHGDALNLPFDNDSFD 158
             + V  +  D L  PF  D FD
Sbjct: 71  RNNGVEVIRSD-LFEPFRGDKFD 92

Length = 188

>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 88  KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD 146
            G R +D GCG G   I LA+  G +V    IS    E A + A   GL   + F  GD
Sbjct: 63  TGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD 120

Length = 230

>gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase; Provisional

 Score = 46.9 bits (111), Expect = 4e-06
 Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 12/176 (6%)

Query: 76  LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG 135
           LS I +N+ S     + +DIG G G     + +  G  V G+ I +     A      + 
Sbjct: 45  LSDIELNENS-----KVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK- 98

Query: 136 LLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM---NHSAALNEARRVLKSGSILTLTD 192
             +K+ F   D L   F  ++FD  +  ++I H+   +      +  + LK   IL +TD
Sbjct: 99  --NKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITD 156

Query: 193 LPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLL 248
                +   D +FK Y+KK  ++  I ++ Y DL+    F+ +   DI+ + + LL
Sbjct: 157 YCADKIENWDEEFKAYIKKRKYT-LIPIQEYGDLIKSCNFQNVVAKDISDYWLELL 211

Length = 263

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 46.7 bits (112), Expect = 4e-06
 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 88  KGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAK--AEGL-LDKVNFL 143
              R +D+G G G   + LAK     RV  + IS      A+  A+  A  L LD V FL
Sbjct: 87  GPLRVLDLGTGSGAIALALAKERPDARVTAVDIS----PEALAVARKNAARLGLDNVEFL 142

Query: 144 HGDALNLPFDNDSFD 158
             D    P     FD
Sbjct: 143 QSDWFE-PLPGGKFD 156

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 82  NKTSITKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKV 140
               + K  R +D+G G G  G+ LA+     ++ G+ I +   E A +      L +++
Sbjct: 38  AFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERI 97

Query: 141 NFLHGDALNL--PFDNDSFD 158
             +  D           SFD
Sbjct: 98  QVIEADIKEFLKALVFASFD 117

Length = 248

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 15/78 (19%)

Query: 88  KGQRFIDIGCGFGLSG---IRLAKA-KGCRVDGITISKFQQESAMKTAK---AEGLLDKV 140
           +  R +D+G G   SG   + LAK      V  + IS      A+  A+     GL  +V
Sbjct: 108 EPLRVLDLGTG---SGAIALALAKERPDAEVTAVDIS----PEALAVARRNAKHGLGARV 160

Query: 141 NFLHGDALNLPFDNDSFD 158
            FL GD    P     FD
Sbjct: 161 EFLQGDWFE-PLPGGRFD 177

Length = 275

>gnl|CDD|234556 TIGR04345, ovoA_Cterm, putative 4-mercaptohistidine N1-methyltranferase

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 32/131 (24%)

Query: 54  HMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR 113
             H+G  +E     NF     KL+ + + +      +R +DIGC  G +   LA+     
Sbjct: 12  EAHYG--EEYFGVPNFPV---KLAELALAQFRNKSRKRALDIGCAVGRASFELARYFD-E 65

Query: 114 VDGITIS--------KFQQESAM-------------KTAKAEGL-----LDKVNFLHGDA 147
           VDGI  S          ++  ++             K      L      D+V+F  GDA
Sbjct: 66  VDGIDFSARFIRPAVALKERGSLRYALKEEGELVSFKEVTLSDLGLDEVRDRVSFFQGDA 125

Query: 148 LNLPFDNDSFD 158
            NL      +D
Sbjct: 126 CNLKPHFTGYD 136

Ovothiol A is N1-methyl-4-mercaptohistidine. In the absence of S-adenosylmethione, a methyl donor, the intermediate produced is 4-mercaptohistidine. In both Erwinia tasmaniensis and Trypanosoma cruzi, a protein occurs with 5-histidylcysteine sulfoxide synthase activity, but these two enzymes and most homologs share an additional C-terminal methyltransferase domain. Thus OvoA may be a bifunctional enzyme with 5-histidylcysteine sulfoxide synthase and 4-mercaptohistidine N1-methyltranferase activity. This model describes C-terminal putative 4-mercaptohistidine N1-methyltranferase domain [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 242

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 89  GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD--KVNFLHGD 146
           G R +D+GCG G+    LA+  G  V GI  S    E  ++ AK   L     +++    
Sbjct: 60  GLRVLDVGCGGGILSEPLARL-GASVTGIDAS----EKPIEVAKLHALESGVNIDYRQAT 114

Query: 147 ALNLPFDNDSFD 158
             +L      FD
Sbjct: 115 VEDLASAGGQFD 126

Length = 243

>gnl|CDD|216342 pfam01170, UPF0020, Putative RNA methylase family UPF0020

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 38/160 (23%), Positives = 59/160 (36%), Gaps = 27/160 (16%)

Query: 75  KLSRIMINKTSITKGQRFIDIGCGFG-------LSGIRLAKAKGCRVDGITISKFQQESA 127
            L+R M+N      G   +D  CG G       L G  +A   G  +D   +       A
Sbjct: 15  TLARAMVNLAGWKPGDPLLDPMCGSGTILIEAALMGANIAPLYGSDIDWRMVQG-----A 69

Query: 128 MKTAKAEGLLDKVNFLHGDALNLPFDNDSFDG-------GWFFESIFH--MN---HSAAL 175
              A+  G+ DK+ F+  DA  LP  N S D        G     I         + A L
Sbjct: 70  RINAENAGVGDKIEFVQADAAKLPLLNGSVDAIVTNPPYG---IRIGSKGALEKLYPAFL 126

Query: 176 NEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHS 215
            EA+RVL+   +    +      +  +   ++  + N+H 
Sbjct: 127 REAKRVLRGRLVFATPEKKDFEKAAEERGLRKKHEFNVHL 166

This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. Length = 172

>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 11/172 (6%)

Query: 81  INKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKV 140
           ++K  +  GQ+ +D+GCG G     +A+     V GI +S      A++  +A G    V
Sbjct: 259 VDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALE--RAIGRKCSV 316

Query: 141 NFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEA-RRVLKSGSILTLTDLPLLSVS 199
            F   D     + ++SFD  +  ++I H+    AL  +  + LK G  + ++D    S  
Sbjct: 317 EFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY-CRSPG 375

Query: 200 KNDNKFKEYVKK---NIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLL 248
               +F EY+K+   ++H     V+ Y  +L  +GF+ +  +D T   + +L
Sbjct: 376 TPSPEFAEYIKQRGYDLHD----VQAYGQMLKDAGFDDVIAEDRTDQFLQVL 423

Length = 475

>gnl|CDD|223971 COG1041, COG1041, Predicted DNA modification methylase [DNA replication, recombination, and repair]

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 75  KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAK 132
           +L+R M+N   + +G+  +D  CG G  GI L +A   G RV G  I +     A    +
Sbjct: 184 RLARAMVNLARVKRGELVLDPFCGTG--GI-LIEAGLMGARVIGSDIDERMVRGAKINLE 240

Query: 133 AEGLLDKVNFLHGDALNLPFDNDSFDG 159
             G+ D       DA NLP  ++S D 
Sbjct: 241 YYGIEDYPVLKVLDATNLPLRDNSVDA 267

Length = 347

>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 11/109 (10%)

Query: 89  GQRF---IDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG 145
            ++F   +D GCG G    R  + +G +V  + +S      A +   A+      ++L G
Sbjct: 40  QRKFTHVLDAGCGPG-WMSRYWRERGSQVTALDLSPPMLAQARQKDAAD------HYLAG 92

Query: 146 DALNLPFDNDSFDGGWFFESI-FHMNHSAALNEARRVLKSGSILTLTDL 193
           D  +LP    +FD  W   ++ +  N S AL E  RV++ G ++  T L
Sbjct: 93  DIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTL 141

Length = 251

>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain

 Score = 37.6 bits (88), Expect = 9e-04
 Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 22/107 (20%)

Query: 95  IGCGFGLSGIRLAKA----KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL 150
           IG   G+S + LA+A       R+  I    +    A    +  GL D+V  L GD+L  
Sbjct: 3   IGVYSGVSTLWLAQALKDNGLGRLYSIDP--WPGAEAGANLRKAGLADRVRLLRGDSLEA 60

Query: 151 --PFDNDSFDGGWFFESIFHM--NHSAA-----LNEARRVLKSGSIL 188
                + S D       +  +  +H+       L     +L  G I+
Sbjct: 61  LARLPDGSID-------LLFIDGDHTYEAVLADLELWLPLLAPGGII 100

This family appears to be a methyltransferase domain. Length = 105

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 20/184 (10%)

Query: 63  SNSKDNFA----QGSDKLSRIMINKTSITKGQRFIDIGCGFG-LSGIRLAKAKGCRVDGI 117
           + + D  A    + + +L  ++  K         +DIGCG G L+   L +         
Sbjct: 6   AKTYDRHAKIQREMAKRLLALLKEKGIFIPA-SVLDIGCGTGYLTRALLKRFPQAEFIAN 64

Query: 118 TISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI--FHMNHSAAL 175
            IS      A            V F+ GDA  LP ++ SFD      ++     + S AL
Sbjct: 65  DISAGMLAQAKTKLSE-----NVQFICGDAEKLPLEDSSFDLIVSNLALQWCD-DLSQAL 118

Query: 176 NEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI 235
           +E  RVLK G +L  +     ++ +    F ++        ++ ++    LL  S FEL+
Sbjct: 119 SELARVLKPGGLLAFSTFGPGTLHELRQSFGQHG-----LRYLSLDELKALLKNS-FELL 172

Query: 236 KIDD 239
            +++
Sbjct: 173 TLEE 176

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|233303 TIGR01177, TIGR01177, TIGR01177 family protein

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 29/167 (17%)

Query: 75  KLSRIMINKTSITKGQRFIDIGCGFGLSGIRL-AKAKGCRVDGITISKFQQESAMKTAKA 133
           KL+R M+N   +T+G R +D  CG G  G  + A   G +V G  I       A    + 
Sbjct: 169 KLARAMVNLARVTEGDRVLDPFCGTG--GFLIEAGLMGAKVIGCDIDWKMVAGARINLEH 226

Query: 134 EGLLDKVNFLHGDALNLPFDNDSFDG--------------GWFFESIFHMNHSAALNEAR 179
            G+ D      GDA  LP  ++S D               G   ES++      +L E  
Sbjct: 227 YGIEDFF-VKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLY----ERSLEEFH 281

Query: 180 RVLKSGS---ILTLTDLPLLSVSKN----DNKFKEYVKKNIHSNFIL 219
            VLKS         T + L S++++      +F+  V +++  +  +
Sbjct: 282 EVLKSEGWIVYAVPTRIDLESLAEDAFRVVKRFEVRVHRSLTRHIYV 328

This family is found exclusively in the Archaea [Hypothetical proteins, Conserved]. Length = 329

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 79  IMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLL 137
           + ++K     G R  DIG G G   I  A A    RV  I   +   E   + A   G +
Sbjct: 25  LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-V 83

Query: 138 DKVNFLHGDALNLPFDNDSFD 158
           D +  + GDA     D  S D
Sbjct: 84  DNLEVVEGDAPEALPDLPSPD 104

Length = 187

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 88  KGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAK--AEGL-LDKVNFL 143
             +R +D+G G G   I LAK      V  + IS      A+  A+  AE   L +V  +
Sbjct: 110 LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDIS----PDALALARENAERNGLVRVLVV 165

Query: 144 HGD---ALNLPFD 153
             D    L   FD
Sbjct: 166 QSDLFEPLRGKFD 178

Length = 280

>gnl|CDD|165876 PLN02232, PLN02232, ubiquinone biosynthesis methyltransferase

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 129 KTAKAEGLLDKVNFLHGDALNLPFDNDSFDG---GWFFESIFHMNHSAALNEARRVLKSG 185
           ++ KA      + ++ GDA++LPFD+  FD    G+   ++  ++   A+ E  RVLK G
Sbjct: 17  QSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV--VDRLRAMKEMYRVLKPG 74

Query: 186 SILTLTDL 193
           S +++ D 
Sbjct: 75  SRVSILDF 82

Length = 160

>gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only]

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 78  RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLL 137
             MI K  +   +R +D+GCG GL+G  L +    R+ G+ IS    E+ +  A  +GL 
Sbjct: 115 AEMIGKADLGPFRRMLDLGCGTGLTGEAL-RDMADRLTGVDIS----ENMLAKAHEKGLY 169

Query: 138 DKVNFLHGDALNLPFDND 155
           D +     +A+    D  
Sbjct: 170 DTL--YVAEAVLFLEDLT 185

Length = 287

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 81  INKTSITKGQRFIDIGC-GFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
           + K ++  G+    +G  G G   ++ AKA G  V  IT S+ + E A K
Sbjct: 159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK 208

Length = 339

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	298
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	100.0
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	100.0
PLN02244	340	tocopherol O-methyltransferase	100.0
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.97
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.97
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.96
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.96
PLN02336	475	phosphoethanolamine N-methyltransferase	99.96
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.95
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.93
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.92
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.92
KOG1540|consensus	296		99.91
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.9
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.9
PRK08317	241	hypothetical protein; Provisional	99.89
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.89
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.88
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.88
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.87
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.87
PLN02490	340	MPBQ/MSBQ methyltransferase	99.87
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.86
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.85
PRK05785	226	hypothetical protein; Provisional	99.85
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.85
PRK11207	197	tellurite resistance protein TehB; Provisional	99.85
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.85
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.84
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.84
KOG1270|consensus	282		99.84
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.84
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.84
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.83
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.83
KOG4300|consensus	252		99.83
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.82
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.82
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.82
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.81
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.8
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.79
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.78
PRK12335	287	tellurite resistance protein TehB; Provisional	99.78
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.78
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.78
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.76
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.76
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.75
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.74
KOG1271|consensus	227		99.73
PRK06202	232	hypothetical protein; Provisional	99.73
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.73
PLN02336	475	phosphoethanolamine N-methyltransferase	99.73
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.73
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.72
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.71
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.71
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.71
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.71
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.7
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.7
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.69
PRK04266	226	fibrillarin; Provisional	99.69
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.69
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.69
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.68
PRK06922	677	hypothetical protein; Provisional	99.68
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.68
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.67
PRK14967	223	putative methyltransferase; Provisional	99.67
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.67
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.66
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.66
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.65
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.65
PLN03075	296	nicotianamine synthase; Provisional	99.65
PRK14968	188	putative methyltransferase; Provisional	99.65
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.64
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.64
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.63
TIGR03438	301	probable methyltransferase. This model represents	99.63
PTZ00146	293	fibrillarin; Provisional	99.63
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.62
KOG2361|consensus	264		99.61
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.61
KOG1541|consensus	270		99.6
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.59
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.59
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.58
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.58
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.58
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.58
COG4123	248	Predicted O-methyltransferase [General function pr	99.57
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.57
PRK07402	196	precorrin-6B methylase; Provisional	99.56
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.56
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.55
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.55
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.55
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.54
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.54
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.54
PHA03411	279	putative methyltransferase; Provisional	99.53
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.53
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.53
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.53
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.53
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.52
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.52
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.5
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.5
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.5
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.5
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.49
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.48
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.47
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.47
KOG1269|consensus	364		99.46
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.45
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.45
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.45
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.44
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.44
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.44
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.43
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.43
KOG3010|consensus	261		99.43
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.42
PRK04457	262	spermidine synthase; Provisional	99.4
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.4
COG2890	280	HemK Methylase of polypeptide chain release factor	99.39
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.39
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.37
TIGR00438	188	rrmJ cell division protein FtsJ.	99.36
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	99.35
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.35
KOG1975|consensus	389		99.34
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.33
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.33
PRK00811	283	spermidine synthase; Provisional	99.33
COG4122	219	Predicted O-methyltransferase [General function pr	99.33
KOG3045|consensus	325		99.31
KOG2899|consensus	288		99.3
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.29
PRK03612	521	spermidine synthase; Provisional	99.29
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.29
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.28
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.28
PLN02476	278	O-methyltransferase	99.27
PRK01581	374	speE spermidine synthase; Validated	99.27
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	99.26
PLN02366	308	spermidine synthase	99.25
KOG2940|consensus	325		99.25
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.24
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.23
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.22
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.21
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.21
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.2
PHA03412	241	putative methyltransferase; Provisional	99.19
PLN02672	1082	methionine S-methyltransferase	99.19
KOG1499|consensus	346		99.18
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.17
KOG2904|consensus	328		99.16
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.16
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.15
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.15
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.14
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.13
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.12
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	99.11
COG2521	287	Predicted archaeal methyltransferase [General func	99.1
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.1
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	99.1
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.09
KOG2915|consensus	314		99.08
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.07
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	99.06
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	99.05
KOG3178|consensus	342		99.04
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.02
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.99
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.99
KOG1500|consensus	517		98.98
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.98
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.98
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.97
KOG1661|consensus	237		98.93
PLN02823	336	spermine synthase	98.92
PRK04148	134	hypothetical protein; Provisional	98.91
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.91
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.9
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.89
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.89
KOG0820|consensus	315		98.88
KOG1663|consensus	237		98.88
KOG1331|consensus	293		98.87
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.86
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.85
KOG3191|consensus	209		98.85
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.84
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.82
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.82
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.81
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.79
KOG3420|consensus	185		98.78
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.78
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.78
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.75
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.74
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.74
COG2520	341	Predicted methyltransferase [General function pred	98.74
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.73
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.7
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.69
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.68
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.67
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.67
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.64
KOG3201|consensus	201		98.62
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.62
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.61
COG3897	218	Predicted methyltransferase [General function pred	98.6
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.6
PRK00536	262	speE spermidine synthase; Provisional	98.59
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.56
COG4798	238	Predicted methyltransferase [General function pred	98.55
KOG3987|consensus	288		98.54
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.53
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.51
PF13679	141	Methyltransf_32: Methyltransferase domain	98.51
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.46
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.46
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.4
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.37
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.36
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.36
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.32
KOG2730|consensus	263		98.3
KOG1709|consensus	271		98.22
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.18
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	98.17
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.17
KOG2187|consensus	534		98.15
COG4076	252	Predicted RNA methylase [General function predicti	98.13
KOG2352|consensus	482		98.1
KOG2798|consensus	369		98.07
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.07
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.04
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.04
PRK10742	250	putative methyltransferase; Provisional	98.04
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.01
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.98
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.97
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.94
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.92
KOG1122|consensus	460		97.88
PLN02668	386	indole-3-acetate carboxyl methyltransferase	97.85
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.83
KOG4058|consensus	199		97.83
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.79
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	97.63
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.61
KOG4589|consensus	232		97.53
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.49
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	97.44
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.42
KOG1501|consensus	636		97.39
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.36
KOG3115|consensus	249		97.36
COG0286	489	HsdM Type I restriction-modification system methyl	97.33
KOG0024|consensus	354		97.32
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.32
COG4301	321	Uncharacterized conserved protein [Function unknow	97.3
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.3
COG3129	292	Predicted SAM-dependent methyltransferase [General	97.28
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.27
KOG0822|consensus	649		97.22
KOG2198|consensus	375		97.22
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	97.16
KOG2793|consensus	248		97.13
KOG2671|consensus	421		97.11
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.04
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	97.01
KOG2918|consensus	335		96.97
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	96.9
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.88
PRK11524	284	putative methyltransferase; Provisional	96.88
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	96.77
KOG1596|consensus	317		96.75
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.72
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.64
PRK13699	227	putative methylase; Provisional	96.57
COG1565	370	Uncharacterized conserved protein [Function unknow	96.56
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	96.45
KOG1253|consensus	525		96.43
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	96.37
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.37
KOG2920|consensus	282		96.26
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	96.25
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	96.22
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	96.21
KOG1562|consensus	337		96.19
KOG0022|consensus	375		96.16
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	96.14
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	96.14
PF03269	177	DUF268: Caenorhabditis protein of unknown function	96.12
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	96.1
PHA01634	156	hypothetical protein	96.08
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	96.02
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	95.86
KOG2539|consensus	491		95.79
PTZ00357	1072	methyltransferase; Provisional	95.72
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.72
KOG3924|consensus	419		95.71
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.7
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	95.69
KOG2078|consensus	495		95.64
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	95.62
KOG1099|consensus	294		95.61
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.61
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	95.5
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.41
KOG2651|consensus	476		95.36
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.34
PLN02740	381	Alcohol dehydrogenase-like	95.33
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	95.28
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	95.24
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	95.23
COG1568	354	Predicted methyltransferases [General function pre	95.22
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	95.18
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	95.12
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.12
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.12
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	95.11
KOG1227|consensus	351		95.08
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	95.01
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	95.01
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	94.93
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	94.85
PRK13699	227	putative methylase; Provisional	94.74
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	94.68
PLN02827	378	Alcohol dehydrogenase-like	94.52
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	94.4
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	94.4
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	94.38
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	94.19
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	94.11
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	94.01
COG3315	297	O-Methyltransferase involved in polyketide biosynt	93.97
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	93.93
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	93.9
PLN02586	360	probable cinnamyl alcohol dehydrogenase	93.88
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	93.75
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	93.73
KOG0821|consensus	326		93.71
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	93.62
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	93.6
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	93.59
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.59
TIGR00497	501	hsdM type I restriction system adenine methylase (	93.59
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	93.49
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	93.42
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	93.41
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	93.37
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.27
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	93.06
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	93.04
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	93.02
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	93.0
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	92.94
PLN02514	357	cinnamyl-alcohol dehydrogenase	92.84
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	92.84
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	92.83
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	92.65
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	92.59
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	92.49
PLN02178	375	cinnamyl-alcohol dehydrogenase	92.07
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	92.0
PRK10458	467	DNA cytosine methylase; Provisional	91.97
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	91.95
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	91.89
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	91.87
PRK11524	284	putative methyltransferase; Provisional	91.82
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	91.75
KOG0023|consensus	360		91.49
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	91.48
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	91.44
KOG2352|consensus	482		91.27
PLN02494	477	adenosylhomocysteinase	91.27
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	91.26
PRK08306	296	dipicolinate synthase subunit A; Reviewed	91.2
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.77
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	90.74
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	90.72
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	90.7
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.47
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	90.22
PRK11730	715	fadB multifunctional fatty acid oxidation complex	90.04
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	89.88
PRK10083	339	putative oxidoreductase; Provisional	89.86
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	89.76
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	89.51
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	89.41
KOG2912|consensus	419		89.17
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	89.15
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	89.09
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	89.01
PRK08324	681	short chain dehydrogenase; Validated	88.96
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	88.85
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	88.45
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	88.32
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	88.25
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	88.15
COG2933	358	Predicted SAM-dependent methyltransferase [General	88.06
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	87.98
PLN02702	364	L-idonate 5-dehydrogenase	87.94
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	87.94
COG0863	302	DNA modification methylase [DNA replication, recom	87.91
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	87.89
KOG1201|consensus	300		87.83
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	87.8
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	87.73
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	87.73
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	87.7
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	87.5
PRK08265	261	short chain dehydrogenase; Provisional	87.29
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	87.19
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	87.05
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	86.92
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	86.82
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	86.8
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	86.8
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	86.74
PRK12939	250	short chain dehydrogenase; Provisional	86.57
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.57
PRK13771	334	putative alcohol dehydrogenase; Provisional	86.36
PRK07806	248	short chain dehydrogenase; Provisional	86.3
KOG1197|consensus	336		86.19
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	86.17
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.94
PRK07109	334	short chain dehydrogenase; Provisional	85.89
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	85.8
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	85.8
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	85.6
PTZ00354	334	alcohol dehydrogenase; Provisional	85.41
KOG2782|consensus	303		85.35
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	85.29
KOG1209|consensus	289		85.28
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	85.15
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.99
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	84.73
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	84.48
COG4017	254	Uncharacterized protein conserved in archaea [Func	84.27
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	83.91
PTZ00075	476	Adenosylhomocysteinase; Provisional	83.84
PRK07417	279	arogenate dehydrogenase; Reviewed	83.7
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.67
KOG1098|consensus	780		83.61
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	83.42
PRK06701	290	short chain dehydrogenase; Provisional	83.32
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	83.31
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	83.29
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	83.06
PRK03562	621	glutathione-regulated potassium-efflux system prot	83.0
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	82.84
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	82.83
PRK10669	558	putative cation:proton antiport protein; Provision	82.72
KOG1269|consensus	364		82.52
PRK06940	275	short chain dehydrogenase; Provisional	82.5
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	82.43
PLN03209	576	translocon at the inner envelope of chloroplast su	82.21
PRK03659	601	glutathione-regulated potassium-efflux system prot	82.01
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	82.01
COG0569	225	TrkA K+ transport systems, NAD-binding component [	81.96
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	81.89
PF14740	289	DUF4471: Domain of unknown function (DUF4471)	81.8
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	81.74
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	81.56
PRK06914	280	short chain dehydrogenase; Provisional	81.54
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	81.28
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	80.83
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	80.66
PRK07454	241	short chain dehydrogenase; Provisional	80.61
PRK06128	300	oxidoreductase; Provisional	80.6
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	80.59
PRK08213	259	gluconate 5-dehydrogenase; Provisional	80.51
PRK09548	602	PTS system ascorbate-specific transporter subunits	80.49
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	80.45
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	80.34
PRK06124	256	gluconate 5-dehydrogenase; Provisional	80.34
KOG1198|consensus	347		80.21
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	80.18
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	80.12
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	80.05

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=100.00  E-value=1.3e-36  Score=252.79  Aligned_cols=250  Identities=23%  Similarity=0.396  Sum_probs=193.0

Q ss_pred             CCCchhhHHhhhcCCcccccccccCCceeEe--eccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Q psy2408          28 GNKGKKTVATLYDSPEGQIGSVLFGGHMHWG--YWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIR  105 (298)
Q Consensus        28 ~~~~~~~~~~~yd~~~~~~y~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~  105 (298)
                      ...+.++++.|||.. ++||..++|..++++  +|.+  +...+.+++.+..+.+++++++++|.+|||||||.|.++..
T Consensus         3 ~~~~~~~i~~hYDl~-ndfy~l~Ld~~m~YS~~~~~~--~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~   79 (273)
T PF02353_consen    3 KKQSRENISAHYDLG-NDFYRLFLDPTMKYSCAYFDE--GDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIY   79 (273)
T ss_dssp             S---HHHHHHHHTS--HHHHTTTS-TT---S----SS--TT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHH
T ss_pred             cchHHHHHHHHcCCc-HHHHHHhcCCCCCCCCeecCC--chhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHH
Confidence            456788999999999 999999999999866  9987  67789999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhcc
Q psy2408         106 LAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVL  182 (298)
Q Consensus       106 l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~L  182 (298)
                      +++++|++|+|+++|+++.+.+++++...|+.+++.+...|..+++   .+||.|++.++++|+...   .+++++.++|
T Consensus        80 ~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~L  156 (273)
T PF02353_consen   80 AAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLL  156 (273)
T ss_dssp             HHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHS
T ss_pred             HHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhc
Confidence            9998899999999999999999999999999999999999998875   389999999999999643   9999999999


Q ss_pred             cCCcEEEEEeCCCCCCCCCh------hHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccchHHHHHHHH
Q psy2408         183 KSGSILTLTDLPLLSVSKND------NKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEAT  256 (298)
Q Consensus       183 kpgG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~  256 (298)
                      +|||++++..+.........      .......  ++...+++.+++...++++||++.+..+++.++.. +++.|.+++
T Consensus       157 kpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyi--FPgg~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~-Tl~~W~~~f  233 (273)
T PF02353_consen  157 KPGGRLVLQTITHRDPPYHAERRSSSDFIRKYI--FPGGYLPSLSEILRAAEDAGLEVEDVENLGRHYAR-TLRAWRENF  233 (273)
T ss_dssp             ETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHT--STTS---BHHHHHHHHHHTT-EEEEEEE-HHHHHH-HHHHHHHHH
T ss_pred             CCCcEEEEEecccccccchhhcCCCceEEEEee--CCCCCCCCHHHHHHHHhcCCEEEEEEEEcCcCHHH-HHHHHHHHH
Confidence            99999999877654421100      1111111  23445667888888899999999999999999999 999999999


Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHhhccccc
Q psy2408         257 LTYKKEIYKSIPNPEKSIDNWLYLFKYMSKNL  288 (298)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (298)
                      .+.++++.+.++  +.+.+.|..++..|+..|
T Consensus       234 ~~~~~~i~~~~~--~~f~r~w~~yl~~~~~~F  263 (273)
T PF02353_consen  234 DANREEIIALFD--EEFYRMWRYYLAYCAAGF  263 (273)
T ss_dssp             HHTHHHHHHHSH--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--HHHHHHHHHHHHHHHHHH
Confidence            999999999986  799999999999886644

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.3e-34  Score=235.18  Aligned_cols=253  Identities=18%  Similarity=0.304  Sum_probs=219.5

Q ss_pred             ccCCCCchhhHHhhhcCCcccccccccCCceeE--eeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHH
Q psy2408          25 ENKGNKGKKTVATLYDSPEGQIGSVLFGGHMHW--GYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLS  102 (298)
Q Consensus        25 ~~~~~~~~~~~~~~yd~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~  102 (298)
                      ..+.....++++.|||.. ++||..+++.++.+  +||.+  +...+.+++....+.+++.+++.||++|||||||.|.+
T Consensus        10 ~~~~~~~~~~i~~HYDl~-n~fy~l~Ld~~~~Yscayf~~--~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l   86 (283)
T COG2230          10 RHSKRRAAENIQAHYDLS-NDFYRLFLDPSMTYSCAYFED--PDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGL   86 (283)
T ss_pred             cccccchhhhhhhHhhcc-hHHHHHhcCCCCceeeEEeCC--CCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHH
Confidence            345557788999999999 99999999998864  58876  44589999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHh
Q psy2408         103 GIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEAR  179 (298)
Q Consensus       103 ~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~  179 (298)
                      ++++|+.++++|+|+++|+++.+.+++++...|+..++++...|..++.   +.||.|++.++++|+...   .+++.+.
T Consensus        87 ~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~  163 (283)
T COG2230          87 AIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVY  163 (283)
T ss_pred             HHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHH
Confidence            9999998899999999999999999999999999989999999998874   459999999999999884   9999999


Q ss_pred             hcccCCcEEEEEeCCCCCCCCChhHHHHHHHh--hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccchHHHHHHHHH
Q psy2408         180 RVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK--NIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATL  257 (298)
Q Consensus       180 r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~  257 (298)
                      ++|+|||.+++..+........  ....+...  ++...+.+.+++....+++||.+.+...+..++.. +++.|.++|+
T Consensus       164 ~~L~~~G~~llh~I~~~~~~~~--~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~-Tl~~W~~~f~  240 (283)
T COG2230         164 ALLKPGGRMLLHSITGPDQEFR--RFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYAR-TLRLWRERFE  240 (283)
T ss_pred             hhcCCCceEEEEEecCCCcccc--cchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHH-HHHHHHHHHH
Confidence            9999999999998876653320  11111111  22345567788888899999999999999999999 9999999999


Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHhhccccc
Q psy2408         258 TYKKEIYKSIPNPEKSIDNWLYLFKYMSKNL  288 (298)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (298)
                      ..++++.+.++  +.+.+.|..++..|+..+
T Consensus       241 ~~~~~a~~~~~--e~~~r~w~~yl~~~~~~F  269 (283)
T COG2230         241 ANRDEAIALYD--ERFYRMWELYLAACAAAF  269 (283)
T ss_pred             HHHHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence            99999999976  799999999999986654

>PLN02244 tocopherol O-methyltransferase

Probab=100.00  E-value=5.1e-34  Score=246.43  Aligned_cols=267  Identities=26%  Similarity=0.407  Sum_probs=207.1

Q ss_pred             cCCCCchhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCC-----CCCCeEEEeCCCCC
Q psy2408          26 NKGNKGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSI-----TKGQRFIDIGCGFG  100 (298)
Q Consensus        26 ~~~~~~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~vLDiGcG~G  100 (298)
                      .......+.++.|||.. +.+|+.+++..+|.|||........+.+++.++.+.+++.+.+     .++.+|||||||+|
T Consensus        52 ~~~~~~~~~i~~~Yd~~-~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G  130 (340)
T PLN02244         52 AATADLKEGIAEFYDES-SGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIG  130 (340)
T ss_pred             cchhhHHHHHHHHHccc-hHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCC
Confidence            44455678899999998 9999999999999999987544677899999999999999987     67889999999999


Q ss_pred             HHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHh
Q psy2408         101 LSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEAR  179 (298)
Q Consensus       101 ~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~  179 (298)
                      ..+..+++..+++|+|+|+|+.+++.++++....++.+++.++++|+.++|+++++||+|++..+++|++++ .+++++.
T Consensus       131 ~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~  210 (340)
T PLN02244        131 GSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELA  210 (340)
T ss_pred             HHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHH
Confidence            999999987788999999999999999999988888778999999999999989999999999999999999 9999999


Q ss_pred             hcccCCcEEEEEeCCCCCCCCC----hhHHH----HHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccchHHH
Q psy2408         180 RVLKSGSILTLTDLPLLSVSKN----DNKFK----EYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPK  251 (298)
Q Consensus       180 r~LkpgG~l~i~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~  251 (298)
                      |+|||||++++.++......+.    .....    ........+.+.+.+++..+++++||..+...+++..+.+ +...
T Consensus       211 rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v~~-~~~~  289 (340)
T PLN02244        211 RVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAP-FWPA  289 (340)
T ss_pred             HHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHHHH-HHHH
Confidence            9999999999988654321110    01111    1122223445668999999999999999999999988777 4444


Q ss_pred             HHHHHHHHHHHHHhhCCChHHHHHHHHHHH-------hhccccccEEEEEEEeC
Q psy2408         252 LTEATLTYKKEIYKSIPNPEKSIDNWLYLF-------KYMSKNLGYIIVTAKKI  298 (298)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~k~  298 (298)
                      ..+...... .+...   .....+.|+..+       ....+.+.|.+|+|+||
T Consensus       290 ~~~~~~~~~-~~~~~---~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~kp  339 (340)
T PLN02244        290 VIKSALTLK-GLFGL---LTSGWATIRGALVMPLMIKGFKKGLIKFAVITCRKP  339 (340)
T ss_pred             HHHHhcCHH-HHHHH---HHHHHHHHhhhhHHHHHHHHHhcCCceeeEEEEeCC
Confidence            332221111 11111   111122232221       12378899999999998

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.97  E-value=2.9e-30  Score=225.38  Aligned_cols=258  Identities=19%  Similarity=0.229  Sum_probs=211.1

Q ss_pred             ccCCCCchhhHHhhhcCCcccccccccCCcee--EeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHH
Q psy2408          25 ENKGNKGKKTVATLYDSPEGQIGSVLFGGHMH--WGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLS  102 (298)
Q Consensus        25 ~~~~~~~~~~~~~~yd~~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~  102 (298)
                      ..+..+..++++.|||.. +++|..+++..+.  .+||..   ...+..++.+....+++.+.+.++.+|||||||+|.+
T Consensus       106 ~n~~~~~~~~i~~hYd~~-n~~y~l~ld~~m~ys~g~~~~---~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~  181 (383)
T PRK11705        106 LQSKKRAWIVGKEHYDLG-NDLFEAMLDPRMQYSCGYWKD---ADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGL  181 (383)
T ss_pred             cCChhhHHHhhhhhcCCc-HHHHHHhcCCCCcccccccCC---CCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHH
Confidence            446677889999999999 9999999998775  478964   5689999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHh
Q psy2408         103 GIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEAR  179 (298)
Q Consensus       103 ~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~  179 (298)
                      +..+++..+++|+|+|+|+++++.++++..  ++  .+++...|+..+   +++||+|++..+++|++..   .+++++.
T Consensus       182 a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~  254 (383)
T PRK11705        182 ARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVR  254 (383)
T ss_pred             HHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHH
Confidence            999998778899999999999999999874  32  378888888765   3789999999999999653   8999999


Q ss_pred             hcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccchHHHHHHHHHHH
Q psy2408         180 RVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTY  259 (298)
Q Consensus       180 r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (298)
                      ++|+|||++++.++...........+...+ -++...+.+.+++...++ .||.+.++..++.++.. ++..|.+.++..
T Consensus       255 r~LkpGG~lvl~~i~~~~~~~~~~~~i~~y-ifp~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~-TL~~W~~~f~~~  331 (383)
T PRK11705        255 RCLKPDGLFLLHTIGSNKTDTNVDPWINKY-IFPNGCLPSVRQIAQASE-GLFVMEDWHNFGADYDR-TLMAWHENFEAA  331 (383)
T ss_pred             HHcCCCcEEEEEEccCCCCCCCCCCCceee-ecCCCcCCCHHHHHHHHH-CCcEEEEEecChhhHHH-HHHHHHHHHHHH
Confidence            999999999998776443221111111000 011234556777777655 69999999999999988 999999999999


Q ss_pred             HHHHHhhCCChHHHHHHHHHHHhhccc-----cccEEEEEEEeC
Q psy2408         260 KKEIYKSIPNPEKSIDNWLYLFKYMSK-----NLGYIIVTAKKI  298 (298)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~a~k~  298 (298)
                      ++++.+.++  +.+.+.|..++..|+.     .++.+.+++.|+
T Consensus       332 ~~~~~~~~~--~~~~r~w~~yl~~~~~~F~~~~~~~~q~~~~~~  373 (383)
T PRK11705        332 WPELADNYS--ERFYRMWRYYLLSCAGAFRARDIQLWQVVFSPR  373 (383)
T ss_pred             HHHHHHhCC--HHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeC
Confidence            999999887  7999999999998844     567788888774

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.97  E-value=1.6e-29  Score=210.98  Aligned_cols=243  Identities=21%  Similarity=0.323  Sum_probs=187.3

Q ss_pred             hhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEE
Q psy2408          38 LYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGI  117 (298)
Q Consensus        38 ~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~v  117 (298)
                      .|+...-..|+.++|...    +.         ..-......++..+.+.++.+|||||||+|..+..++...+++|+++
T Consensus        15 ~y~~~~~~~~e~~~g~~~----~~---------~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~gi   81 (263)
T PTZ00098         15 QYSDEGIKAYEFIFGEDY----IS---------SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGV   81 (263)
T ss_pred             ccccccchhHHHHhCCCC----CC---------CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEE
Confidence            344443566777766432    11         11233367788888889999999999999999999987667899999


Q ss_pred             eCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccC--hH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         118 TISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMN--HS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       118 D~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      |+|+.+++.+++++..   ..++.+++.|+.+.++++++||+|++..+++|++  ++ .++++++++|||||++++.++.
T Consensus        82 D~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~  158 (263)
T PTZ00098         82 DICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC  158 (263)
T ss_pred             ECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            9999999999988654   2469999999998888889999999999999987  55 9999999999999999999886


Q ss_pred             CCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccchHHHHHHHHHHHHHHHHhhCCC--hHH
Q psy2408         195 LLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPN--PEK  272 (298)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  272 (298)
                      ................. ....+.+.+++.++|+++||+++...+++..+.. .+....+.+.+.++++...+++  .+.
T Consensus       159 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (263)
T PTZ00098        159 ADKIENWDEEFKAYIKK-RKYTLIPIQEYGDLIKSCNFQNVVAKDISDYWLE-LLQVELKKLEEKKEEFLKLYSEKEYNS  236 (263)
T ss_pred             cccccCcHHHHHHHHHh-cCCCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHH-HHHHHHHHHHHhHHHHHHhcCHHHHHH
Confidence            54422211222221111 1234678899999999999999999999888777 6666778888899999998886  444


Q ss_pred             HHHHHHHHHhhc-cccccEEEEEEEeC
Q psy2408         273 SIDNWLYLFKYM-SKNLGYIIVTAKKI  298 (298)
Q Consensus       273 ~~~~~~~~~~~~-~~~~~~~~~~a~k~  298 (298)
                      ....|......+ .+.+.|+++.|+||
T Consensus       237 ~~~~~~~~~~~~~~~~~~wg~~~~~~~  263 (263)
T PTZ00098        237 LKDGWTRKIKDTKRKLQKWGYFKAQKM  263 (263)
T ss_pred             HHHHHHHHHHHhhccccccceEeecCC
Confidence            555666555555 67799999999996

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.96  E-value=1.8e-28  Score=197.45  Aligned_cols=199  Identities=27%  Similarity=0.386  Sum_probs=158.8

Q ss_pred             chhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc
Q psy2408          31 GKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK  110 (298)
Q Consensus        31 ~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~  110 (298)
                      ....++..|++. ++.||.+. ..+.++             ....+.+.++..+...+|.+|||+|||||.++..+++..
T Consensus         9 k~~~v~~vF~~i-a~~YD~~n-~~~S~g-------------~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~   73 (238)
T COG2226           9 KQEKVQKVFDKV-AKKYDLMN-DLMSFG-------------LHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSV   73 (238)
T ss_pred             cHHHHHHHHHhh-HHHHHhhc-ccccCc-------------chHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhc
Confidence            356788899999 99998763 111111             224455667777777789999999999999999999974


Q ss_pred             -CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEE
Q psy2408         111 -GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSIL  188 (298)
Q Consensus       111 -~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l  188 (298)
                       .++|+++|+|+.|++.++++..+.++.. ++++++|+.++||++++||+|.+.+.|.++++. .+|++++|+|||||++
T Consensus        74 g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~  152 (238)
T COG2226          74 GTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRL  152 (238)
T ss_pred             CCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEE
Confidence             4799999999999999999999888765 999999999999999999999999999999999 9999999999999999


Q ss_pred             EEEeCCCCCCCCChhHHHHHHHh---------------------hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcc
Q psy2408         189 TLTDLPLLSVSKNDNKFKEYVKK---------------------NIHSNFILVEHYPDLLNKSGFELIKIDDITSHVM  245 (298)
Q Consensus       189 ~i~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~  245 (298)
                      ++.++..+........+..+...                     .....+.+.+++..+++++||..+..+.+..+..
T Consensus       153 ~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~  230 (238)
T COG2226         153 LVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIV  230 (238)
T ss_pred             EEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeE
Confidence            99999876644322222222111                     0112467788999999999999888777666543

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.96  E-value=9.9e-29  Score=201.40  Aligned_cols=198  Identities=26%  Similarity=0.359  Sum_probs=94.4

Q ss_pred             hhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-
Q psy2408          32 KKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-  110 (298)
Q Consensus        32 ~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-  110 (298)
                      .+.+++.||.. ++.||.+. ..+.++..             ..+.+.+++.+...++.+|||+|||||.++..+++.. 
T Consensus         6 ~~~v~~~Fd~i-a~~YD~~n-~~ls~g~~-------------~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~   70 (233)
T PF01209_consen    6 EQYVRKMFDRI-APRYDRMN-DLLSFGQD-------------RRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVG   70 (233)
T ss_dssp             ----------------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS
T ss_pred             HHHHHHHHHHH-HHHhCCCc-cccCCcHH-------------HHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCC
Confidence            34688999999 99998763 22222211             1222345555567789999999999999999999864 


Q ss_pred             -CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEE
Q psy2408         111 -GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSIL  188 (298)
Q Consensus       111 -~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l  188 (298)
                       .++|+|+|+|+.|++.|+++....+.. +++++++|+.++|+++++||+|++.+.+++++++ .++++++|+|||||++
T Consensus        71 ~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l  149 (233)
T PF01209_consen   71 PNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRL  149 (233)
T ss_dssp             ---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEE
T ss_pred             CccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEE
Confidence             469999999999999999999987765 7999999999999999999999999999999999 9999999999999999


Q ss_pred             EEEeCCCCCCCCChhHHHHHHHh---------------------hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCccc
Q psy2408         189 TLTDLPLLSVSKNDNKFKEYVKK---------------------NIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMP  246 (298)
Q Consensus       189 ~i~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~  246 (298)
                      ++.++..+.... ......++..                     .....+.+.+++.++|+++||+.++.+.+..++..
T Consensus       150 ~ile~~~p~~~~-~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~  227 (233)
T PF01209_consen  150 VILEFSKPRNPL-LRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVT  227 (233)
T ss_dssp             EEEEEEB-SSHH-HHHHHHH-----------------------------------------------------------
T ss_pred             EEeeccCCCCch-hhceeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999987655321 1111111100                     01234677899999999999999988887776543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.96  E-value=1e-26  Score=210.98  Aligned_cols=216  Identities=22%  Similarity=0.345  Sum_probs=174.9

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS  156 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  156 (298)
                      .+.+++.+.+.++.+|||||||+|..+..++...+++|+|+|+|+.+++.|+++..  +...++.+.++|+...++++++
T Consensus       255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~  332 (475)
T PLN02336        255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNS  332 (475)
T ss_pred             HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCC
Confidence            45566777777889999999999999999998778899999999999999988765  3335799999999988888889


Q ss_pred             eeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEE
Q psy2408         157 FDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI  235 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  235 (298)
                      ||+|++..+++|++++ .++++++++|+|||++++.++......+ ...+...... ......+..++.++++++||.++
T Consensus       333 fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~-~g~~~~~~~~~~~~l~~aGF~~i  410 (475)
T PLN02336        333 FDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTP-SPEFAEYIKQ-RGYDLHDVQAYGQMLKDAGFDDV  410 (475)
T ss_pred             EEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCC-cHHHHHHHHh-cCCCCCCHHHHHHHHHHCCCeee
Confidence            9999999999999999 9999999999999999999887654333 1222222222 12356788999999999999999


Q ss_pred             EEEeCCCCcccchHHHHHHHHHHHHHHHHhhCCC--hHHHHHHHHHHHhhc-cccccEEEEEEEe
Q psy2408         236 KIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPN--PEKSIDNWLYLFKYM-SKNLGYIIVTAKK  297 (298)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~a~k  297 (298)
                      ..++++..+.. ++..|...+.....++...++.  .......|......+ ++.++|++++|||
T Consensus       411 ~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wg~~~a~k  474 (475)
T PLN02336        411 IAEDRTDQFLQ-VLQRELDAVEKEKDEFISDFSEEDYNDIVGGWKAKLVRSSSGEQKWGLFIAKK  474 (475)
T ss_pred             eeecchHHHHH-HHHHHHHHHHhCHHHHHHhcCHHHHHHHHHhHHHHHhhhcCCceeeEEEEEec
Confidence            99999999888 7777888888888888887775  334455666655544 5678999999998

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.95  E-value=4.6e-26  Score=190.00  Aligned_cols=198  Identities=21%  Similarity=0.301  Sum_probs=148.2

Q ss_pred             chhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc
Q psy2408          31 GKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK  110 (298)
Q Consensus        31 ~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~  110 (298)
                      -.+.++++||.. ++.||.+... +..+             ....+.+.+++.+.+.++.+|||+|||+|.++..+++..
T Consensus        31 ~~~~v~~~f~~~-A~~YD~~~~~-~s~g-------------~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~   95 (261)
T PLN02233         31 CANERQALFNRI-APVYDNLNDL-LSLG-------------QHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKV   95 (261)
T ss_pred             hHHHHHHHHHHh-hhHHHHhhhh-hcCC-------------hhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHh
Confidence            356788999999 9999975321 1000             011223344556667788999999999999999998864


Q ss_pred             --CCeEEEEeCCHHHHHHHHHHHHh--cCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCC
Q psy2408         111 --GCRVDGITISKFQQESAMKTAKA--EGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSG  185 (298)
Q Consensus       111 --~~~v~~vD~s~~~l~~a~~~~~~--~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~Lkpg  185 (298)
                        .++|+|+|+|++|++.|+++...  .....+++++++|+.++|+++++||+|++..++++++++ .+++++.|+||||
T Consensus        96 ~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpG  175 (261)
T PLN02233         96 GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPG  175 (261)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcC
Confidence              36999999999999999887542  122347999999999999999999999999999999999 9999999999999


Q ss_pred             cEEEEEeCCCCCCCCChhHHHHHHHh--------------------hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCc
Q psy2408         186 SILTLTDLPLLSVSKNDNKFKEYVKK--------------------NIHSNFILVEHYPDLLNKSGFELIKIDDITSHV  244 (298)
Q Consensus       186 G~l~i~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~  244 (298)
                      |++++.++....... ......+...                    .....+++.+++.++++++||+++....+..+.
T Consensus       176 G~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~  253 (261)
T PLN02233        176 SRVSILDFNKSTQPF-TTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGL  253 (261)
T ss_pred             cEEEEEECCCCCcHH-HHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCe
Confidence            999999887544211 0111110000                    112357899999999999999999888776554

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.93  E-value=4.2e-25  Score=181.22  Aligned_cols=196  Identities=22%  Similarity=0.355  Sum_probs=159.5

Q ss_pred             CeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccc
Q psy2408          90 QRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFH  168 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~  168 (298)
                      .+|||||||+|..+..+++.. +++++|+|+|+.+++.+++++...++.++++++..|+...+++ ++||+|++..+++|
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~   79 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH   79 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence            379999999999999999875 5799999999999999999999888888899999999766654 58999999999999


Q ss_pred             cChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccc
Q psy2408         169 MNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPL  247 (298)
Q Consensus       169 ~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~  247 (298)
                      +++. .+++++.++|+|||++++.++.......       ...........+..+|.++++++||.+++..+++.++.. 
T Consensus        80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~-  151 (224)
T smart00828       80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSA-------IEHEETTSYLVTREEWAELLARNNLRVVEGVDASLEIAN-  151 (224)
T ss_pred             CCCHHHHHHHHHHHcCCCCEEEEEEcccccCcc-------ccccccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhh-
Confidence            9999 9999999999999999998875322111       001111233667889999999999999999999998866 


Q ss_pred             hHHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHHhhc----cccccEEEEEEEeC
Q psy2408         248 LVPKLTEATLTYKKEIYKS-IPNPEKSIDNWLYLFKYM----SKNLGYIIVTAKKI  298 (298)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~k~  298 (298)
                      +.  |...+...++++.+. ++  +.+.+.|..+...+    ++.++|.+++++|+
T Consensus       152 ~l--~~~~f~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  203 (224)
T smart00828      152 FL--YDPGFEDNLERLYQDDLD--EVTKRHFRGIANLGKLLEKGLASYALLIVQKD  203 (224)
T ss_pred             hc--cChhHHHHHHHhccccch--HHHHHHHhhHHHHHHHHHhchHhhEEEEEecc
Confidence            32  667788888777773 43  56888888776653    66789999999985

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.92  E-value=8e-24  Score=174.45  Aligned_cols=198  Identities=20%  Similarity=0.306  Sum_probs=151.8

Q ss_pred             hhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-
Q psy2408          32 KKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-  110 (298)
Q Consensus        32 ~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-  110 (298)
                      .+.++.+|+.. +..||.+..- +  ++.           ......+.++..+.+.++.+|||+|||+|.++..+++.. 
T Consensus         4 ~~~~~~~f~~~-a~~yd~~~~~-~--~~~-----------~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~   68 (231)
T TIGR02752         4 EERVHKVFEKI-YKKYDRMNSV-I--SFQ-----------RHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVG   68 (231)
T ss_pred             HHHHHHHHHHh-hhHHhHHHHH-h--cCC-----------chHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhC
Confidence            46788999999 9999875211 1  011           113344667778888889999999999999999999863 


Q ss_pred             -CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEE
Q psy2408         111 -GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSIL  188 (298)
Q Consensus       111 -~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l  188 (298)
                       +.+|+|+|+|+.+++.+++++...++ +++.++++|+..+++++++||+|++..++++++++ .+++++.++|+|||++
T Consensus        69 ~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l  147 (231)
T TIGR02752        69 PEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKV  147 (231)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEE
Confidence             46999999999999999999887776 47999999999888888899999999999999999 9999999999999999


Q ss_pred             EEEeCCCCCCCCChhHHHHH--------------------HHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcc
Q psy2408         189 TLTDLPLLSVSKNDNKFKEY--------------------VKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVM  245 (298)
Q Consensus       189 ~i~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~  245 (298)
                      ++.+................                    ........+++.+++.++|+++||.++++..+..+..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~  224 (231)
T TIGR02752       148 VCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVA  224 (231)
T ss_pred             EEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceE
Confidence            99876543321100000000                    0001223567889999999999999999888776543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.92  E-value=3e-24  Score=179.16  Aligned_cols=161  Identities=20%  Similarity=0.244  Sum_probs=126.5

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-CCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-FDND  155 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~  155 (298)
                      ...+++.+. .++.+|||+|||+|..+..+++ .+.+|+++|+|+.|++.|+++....++..+++++++|+.+++ ++++
T Consensus        34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~-~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~  111 (255)
T PRK11036         34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAE-LGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET  111 (255)
T ss_pred             HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence            455666665 4567999999999999999998 588999999999999999999998888778999999998763 5568


Q ss_pred             CeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChh----HHHHHHH--------hhcccCCCCcch
Q psy2408         156 SFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDN----KFKEYVK--------KNIHSNFILVEH  222 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~----~~~~~~~--------~~~~~~~~~~~~  222 (298)
                      +||+|++..+++|+.++ .+++++.++|||||++++..++...... ..    .+.....        .......+++++
T Consensus       112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  190 (255)
T PRK11036        112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLM-HNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQ  190 (255)
T ss_pred             CCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHH-HHHHccChHHHHhcCccccccCCCCCCCCCHHH
Confidence            99999999999999999 9999999999999999988666432100 00    0000000        011124567899


Q ss_pred             HHHHHHhCCCcEEEEEeC
Q psy2408         223 YPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       223 ~~~~l~~~Gf~~~~~~~~  240 (298)
                      +.++|+++||+++....+
T Consensus       191 l~~~l~~aGf~~~~~~gi  208 (255)
T PRK11036        191 VYQWLEEAGWQIMGKTGV  208 (255)
T ss_pred             HHHHHHHCCCeEeeeeeE
Confidence            999999999999876654

>KOG1540|consensus

Probab=99.91  E-value=6.5e-24  Score=167.65  Aligned_cols=196  Identities=23%  Similarity=0.369  Sum_probs=150.2

Q ss_pred             hHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHH-HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-C
Q psy2408          34 TVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDK-LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-G  111 (298)
Q Consensus        34 ~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~  111 (298)
                      .+.+-|... +..||.+.+- +              ....++ +.+..+..+.+.+++++||++||||.++..+.+.. .
T Consensus        61 ~V~~vF~~v-A~~YD~mND~-m--------------SlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s  124 (296)
T KOG1540|consen   61 LVHHVFESV-AKKYDIMNDA-M--------------SLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKS  124 (296)
T ss_pred             HHHHHHHHH-HHHHHHHHHH-h--------------hcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhcc
Confidence            455666666 6666655322 1              112233 23456788888899999999999999999998863 2


Q ss_pred             ------CeEEEEeCCHHHHHHHHHHHHhcCCCCc--eEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcc
Q psy2408         112 ------CRVDGITISKFQQESAMKTAKAEGLLDK--VNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVL  182 (298)
Q Consensus       112 ------~~v~~vD~s~~~l~~a~~~~~~~~~~~~--i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~L  182 (298)
                            .+|+++|+|++|+..++++..+.++...  +.++++|++++||++++||+.++.+.+.+++++ +.|++++|+|
T Consensus       125 ~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVL  204 (296)
T KOG1540|consen  125 QFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVL  204 (296)
T ss_pred             ccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhc
Confidence                  6899999999999999999988777655  899999999999999999999999999999999 9999999999


Q ss_pred             cCCcEEEEEeCCCCCCCCChhHHHHHHHh--------------------hcccCCCCcchHHHHHHhCCCcEEE-EEeCC
Q psy2408         183 KSGSILTLTDLPLLSVSKNDNKFKEYVKK--------------------NIHSNFILVEHYPDLLNKSGFELIK-IDDIT  241 (298)
Q Consensus       183 kpgG~l~i~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~l~~~Gf~~~~-~~~~~  241 (298)
                      ||||++.+.+++..+..+....+......                    .....+.+.+++..+.+++||..+. .+.+.
T Consensus       205 KpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~~ye~lt  284 (296)
T KOG1540|consen  205 KPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVNGYENLT  284 (296)
T ss_pred             CCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCccccccccce
Confidence            99999999999876632211222111111                    0124577889999999999999886 66655


Q ss_pred             CCcc
Q psy2408         242 SHVM  245 (298)
Q Consensus       242 ~~~~  245 (298)
                      .++.
T Consensus       285 ~Gv~  288 (296)
T KOG1540|consen  285 FGVV  288 (296)
T ss_pred             eeee
Confidence            5543

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.90  E-value=5.3e-23  Score=174.82  Aligned_cols=157  Identities=20%  Similarity=0.281  Sum_probs=125.0

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      .++.+|||||||+|.++..+++ .+++|+|+|+|+.+++.|+.++...+...++.++++|+.++++++++||+|++.+++
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL  208 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI  208 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence            4677999999999999999987 688999999999999999988765554457999999999888777899999999999


Q ss_pred             cccChH-HHHHHHhhcccCCcEEEEEeCCCCCC-----CCChhHHHHHHHhhc--ccCCCCcchHHHHHHhCCCcEEEEE
Q psy2408         167 FHMNHS-AALNEARRVLKSGSILTLTDLPLLSV-----SKNDNKFKEYVKKNI--HSNFILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                      +|+.++ .+++++.++|||||.+++.+++....     .........+.....  ...+++++++..+|+++||++++..
T Consensus       209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~  288 (322)
T PLN02396        209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA  288 (322)
T ss_pred             HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence            999999 99999999999999999998764321     000000011111111  2347889999999999999999987


Q ss_pred             eCCCCc
Q psy2408         239 DITSHV  244 (298)
Q Consensus       239 ~~~~~~  244 (298)
                      .+....
T Consensus       289 G~~~~p  294 (322)
T PLN02396        289 GFVYNP  294 (322)
T ss_pred             eeEEcC
Confidence            766543

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.90  E-value=1.5e-21  Score=163.10  Aligned_cols=154  Identities=16%  Similarity=0.169  Sum_probs=118.0

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      +....+++.+...++.+|||+|||+|.++..+++.. +++|+|+|+|+.|++.+++.        +++++++|+.+++ +
T Consensus        16 ~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~   86 (255)
T PRK14103         16 RPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-P   86 (255)
T ss_pred             CHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-C
Confidence            445677888888888999999999999999999863 67999999999999999753        4789999998874 4


Q ss_pred             CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHH------H---hh---cccCCCCc
Q psy2408         154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYV------K---KN---IHSNFILV  220 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~------~---~~---~~~~~~~~  220 (298)
                      +++||+|+++.+++|++++ .+++++.++|+|||++++..+....... ........      .   ..   ....+.+.
T Consensus        87 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  165 (255)
T PRK14103         87 KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPS-HAAVRALARREPWAKLLRDIPFRVGAVVQTP  165 (255)
T ss_pred             CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChh-HHHHHHHhccCchhHHhcccccccCcCCCCH
Confidence            6799999999999999999 9999999999999999987543211111 01111110      0   00   11235678


Q ss_pred             chHHHHHHhCCCcEEEEE
Q psy2408         221 EHYPDLLNKSGFELIKID  238 (298)
Q Consensus       221 ~~~~~~l~~~Gf~~~~~~  238 (298)
                      +++.++|+++||++....
T Consensus       166 ~~~~~~l~~aGf~v~~~~  183 (255)
T PRK14103        166 AGYAELLTDAGCKVDAWE  183 (255)
T ss_pred             HHHHHHHHhCCCeEEEEe
Confidence            999999999999865433

>PRK08317 hypothetical protein; Provisional

Probab=99.89  E-value=1.6e-20  Score=155.70  Aligned_cols=167  Identities=26%  Similarity=0.357  Sum_probs=128.2

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ....+.+++.+.+.++.+|||+|||+|.++..++...  .++++++|+|+.+++.++++...  ...++++...|+..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~   82 (241)
T PRK08317          5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLP   82 (241)
T ss_pred             HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCC
Confidence            3455667788888899999999999999999999864  46999999999999999988332  2357999999998888


Q ss_pred             CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCC---CChhHHHHHHHhh--cccCCCCcchHHH
Q psy2408         152 FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVS---KNDNKFKEYVKKN--IHSNFILVEHYPD  225 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~  225 (298)
                      +++++||+|++..+++|++++ .+++++.++|+|||++++.++.+....   .............  ..........+.+
T Consensus        83 ~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (241)
T PRK08317         83 FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPG  162 (241)
T ss_pred             CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            878899999999999999999 999999999999999999886543211   1111222222111  1223445568999


Q ss_pred             HHHhCCCcEEEEEeCCC
Q psy2408         226 LLNKSGFELIKIDDITS  242 (298)
Q Consensus       226 ~l~~~Gf~~~~~~~~~~  242 (298)
                      +|+++||..+.......
T Consensus       163 ~l~~aGf~~~~~~~~~~  179 (241)
T PRK08317        163 LFREAGLTDIEVEPYTL  179 (241)
T ss_pred             HHHHcCCCceeEEEEEE
Confidence            99999999887665443

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.89  E-value=6.4e-22  Score=165.04  Aligned_cols=184  Identities=20%  Similarity=0.284  Sum_probs=139.9

Q ss_pred             chhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc
Q psy2408          31 GKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK  110 (298)
Q Consensus        31 ~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~  110 (298)
                      .++.++..|+.. +..|+..                   ...+....+.+++.+...++.+|||+|||+|.++..++. .
T Consensus         5 ~k~~i~~~F~~a-a~~Y~~~-------------------~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~   63 (251)
T PRK10258          5 NKQAIAAAFGRA-AAHYEQH-------------------AELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRE-R   63 (251)
T ss_pred             CHHHHHHHHHHH-HHhHhHH-------------------HHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHH-c
Confidence            356788888887 7777753                   234567777788888766678999999999999998887 5


Q ss_pred             CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEE
Q psy2408         111 GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILT  189 (298)
Q Consensus       111 ~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~  189 (298)
                      +.+++++|+|+.|++.++++..      ...++++|+..+|+++++||+|+++.++++++++ .++.++.++|+|||.++
T Consensus        64 ~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~  137 (251)
T PRK10258         64 GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVA  137 (251)
T ss_pred             CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEE
Confidence            7899999999999999987742      2568999999988888899999999999999999 99999999999999999


Q ss_pred             EEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCC
Q psy2408         190 LTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITS  242 (298)
Q Consensus       190 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  242 (298)
                      ++.+...........+...........+.+.+++.+++...|+.. +.+.+..
T Consensus       138 ~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~  189 (251)
T PRK10258        138 FTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH-HIQPITL  189 (251)
T ss_pred             EEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee-eeeEEEE
Confidence            988764321110011111111223345788999999999888864 3343333

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.88  E-value=2.4e-21  Score=165.83  Aligned_cols=166  Identities=22%  Similarity=0.236  Sum_probs=123.9

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS  156 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  156 (298)
                      ...++..+...++.+|||||||+|..+..++......|+|+|+|+.++..++......+...++.++.+|+.++|+ .++
T Consensus       111 ~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~  189 (322)
T PRK15068        111 WDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKA  189 (322)
T ss_pred             HHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCC
Confidence            4455666655578899999999999999999854457999999999988765543333333579999999999987 689


Q ss_pred             eeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChh-HHHHHHHhhcccCCCCcchHHHHHHhCCCcE
Q psy2408         157 FDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDN-KFKEYVKKNIHSNFILVEHYPDLLNKSGFEL  234 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  234 (298)
                      ||+|++..+++|..++ .++++++++|+|||.+++.++.......... ....+..........+.+++..+|+++||++
T Consensus       190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~  269 (322)
T PRK15068        190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKD  269 (322)
T ss_pred             cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCce
Confidence            9999999999999999 9999999999999999998665433221000 0011111111112357889999999999999


Q ss_pred             EEEEeCCCC
Q psy2408         235 IKIDDITSH  243 (298)
Q Consensus       235 ~~~~~~~~~  243 (298)
                      ++..+.+..
T Consensus       270 i~~~~~~~t  278 (322)
T PRK15068        270 VRIVDVSVT  278 (322)
T ss_pred             EEEEeCCCC
Confidence            998877654

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.88  E-value=9.9e-23  Score=161.18  Aligned_cols=153  Identities=24%  Similarity=0.310  Sum_probs=123.4

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      -++.+|||+|||-|.++..+|+ .|+.|+|+|+++.+++.|+..+.+.++.  +.+.+..+.++....++||+|+|++++
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr-~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEVl  134 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLAR-LGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEVL  134 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHH-CCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhHH
Confidence            3789999999999999999999 7899999999999999999999988864  778888887775445899999999999


Q ss_pred             cccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHH--------HHHhhc--ccCCCCcchHHHHHHhCCCcEE
Q psy2408         167 FHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKE--------YVKKNI--HSNFILVEHYPDLLNKSGFELI  235 (298)
Q Consensus       167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~l~~~Gf~~~  235 (298)
                      +|++++ .+++.+.+++||||.+++++++......   ...-        +.....  ...+..++++..++..+|+.+.
T Consensus       135 EHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~---~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~  211 (243)
T COG2227         135 EHVPDPESFLRACAKLVKPGGILFLSTINRTLKAY---LLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKII  211 (243)
T ss_pred             HccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHH---HHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEE
Confidence            999999 9999999999999999999988433111   1110        111111  1346678899999999999988


Q ss_pred             EEEeCCCCcc
Q psy2408         236 KIDDITSHVM  245 (298)
Q Consensus       236 ~~~~~~~~~~  245 (298)
                      +...+.....
T Consensus       212 ~~~g~~y~p~  221 (243)
T COG2227         212 DRKGLTYNPL  221 (243)
T ss_pred             eecceEeccc
Confidence            8877665543

>TIGR00452 methyltransferase, putative

Probab=99.87  E-value=7.9e-21  Score=160.87  Aligned_cols=169  Identities=19%  Similarity=0.138  Sum_probs=123.8

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      +-....++..+...++.+|||+|||+|..+..++......|+|+|+|+.|+.+++......+...++.+...++.+++..
T Consensus       107 ~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~  186 (314)
T TIGR00452       107 DIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL  186 (314)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC
Confidence            34445677777767889999999999999988887433479999999999987644333222234688889999888753


Q ss_pred             CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChh-HHHHHHHhhcccCCCCcchHHHHHHhCC
Q psy2408         154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDN-KFKEYVKKNIHSNFILVEHYPDLLNKSG  231 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~G  231 (298)
                       ++||+|+++.+++|.+++ .+|++++++|+|||.|++.+........... ...............+..++..+|+++|
T Consensus       187 -~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aG  265 (314)
T TIGR00452       187 -YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVG  265 (314)
T ss_pred             -CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCC
Confidence             589999999999999999 9999999999999999998765433221000 0001111111123457889999999999


Q ss_pred             CcEEEEEeCCCC
Q psy2408         232 FELIKIDDITSH  243 (298)
Q Consensus       232 f~~~~~~~~~~~  243 (298)
                      |+.+++.+....
T Consensus       266 F~~V~i~~~~~t  277 (314)
T TIGR00452       266 FENFRILDVLKT  277 (314)
T ss_pred             CeEEEEEeccCC
Confidence            999988776554

Known examples to date are restricted to the proteobacteria.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.87  E-value=1.1e-20  Score=156.66  Aligned_cols=200  Identities=26%  Similarity=0.356  Sum_probs=148.7

Q ss_pred             CchhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh
Q psy2408          30 KGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA  109 (298)
Q Consensus        30 ~~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~  109 (298)
                      ...+.++++|+.. +..|+.+.. ...+  .           ........++..+...++.+|||+|||+|..+..++..
T Consensus         8 ~~~~~~~~~~~~~-~~~y~~~~~-~~~~--~-----------~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~   72 (239)
T PRK00216          8 EKQEKVAEMFDSI-APKYDLMND-LLSF--G-----------LHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKA   72 (239)
T ss_pred             cchHHHHHHHHHh-hhhHHHHHH-HHhc--C-----------CcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHH
Confidence            3466888999998 888875311 0000  0           11233445566666667889999999999999999887


Q ss_pred             cC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCc
Q psy2408         110 KG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGS  186 (298)
Q Consensus       110 ~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG  186 (298)
                      .+  .+++++|+++.+++.+++++...++..++.++..|+.+.+++.++||+|++..+++++.++ .+++++.++|+|||
T Consensus        73 ~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG  152 (239)
T PRK00216         73 VGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGG  152 (239)
T ss_pred             cCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCc
Confidence            53  8999999999999999999877666667999999999887777899999999999999999 99999999999999


Q ss_pred             EEEEEeCCCCCCCCChhHHHHHH--------Hh-------------hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcc
Q psy2408         187 ILTLTDLPLLSVSKNDNKFKEYV--------KK-------------NIHSNFILVEHYPDLLNKSGFELIKIDDITSHVM  245 (298)
Q Consensus       187 ~l~i~~~~~~~~~~~~~~~~~~~--------~~-------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~  245 (298)
                      .+++.+........ ........        ..             .....+++.+++.++|+++||.++.......+..
T Consensus       153 ~li~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~  231 (239)
T PRK00216        153 RLVILEFSKPTNPP-LKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIV  231 (239)
T ss_pred             EEEEEEecCCCchH-HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcE
Confidence            99998775433211 00000000        00             0012356788999999999999999887766544

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.87  E-value=1e-20  Score=161.37  Aligned_cols=160  Identities=22%  Similarity=0.288  Sum_probs=124.5

Q ss_pred             HHHHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          75 KLSRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        75 ~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      .+...+++.+.+ .++.+|||+|||+|..+..+++.. +.+|+++|+|+.|++.++++...    .+++++.+|+.++++
T Consensus        99 ~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~  174 (340)
T PLN02490         99 DMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPF  174 (340)
T ss_pred             HHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCC
Confidence            344445565544 467899999999999999888764 57999999999999999987542    358899999999888


Q ss_pred             CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCC
Q psy2408         153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG  231 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  231 (298)
                      ++++||+|++..++++++++ .+++++.++|+|||++++.+......     ........ ....+.+.+++.++|+++|
T Consensus       175 ~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~-----~~~r~~~~-~~~~~~t~eEl~~lL~~aG  248 (340)
T PLN02490        175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTF-----WLSRFFAD-VWMLFPKEEEYIEWFTKAG  248 (340)
T ss_pred             CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcch-----hHHHHhhh-hhccCCCHHHHHHHHHHCC
Confidence            88899999999999999999 99999999999999998876543211     11111111 1122457899999999999


Q ss_pred             CcEEEEEeCCCCc
Q psy2408         232 FELIKIDDITSHV  244 (298)
Q Consensus       232 f~~~~~~~~~~~~  244 (298)
                      |+.++..++....
T Consensus       249 F~~V~i~~i~~~~  261 (340)
T PLN02490        249 FKDVKLKRIGPKW  261 (340)
T ss_pred             CeEEEEEEcChhh
Confidence            9999988765543

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.86  E-value=4.2e-20  Score=155.90  Aligned_cols=153  Identities=24%  Similarity=0.313  Sum_probs=123.7

Q ss_pred             CCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEE
Q psy2408          84 TSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGW  161 (298)
Q Consensus        84 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~  161 (298)
                      ..+.++.+|||+|||+|..+..+++..+  .+|+++|+|+.+++.|+++....++. +++++.+|+.++++++++||+|+
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi  151 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVII  151 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEE
Confidence            3567899999999999998887777543  47999999999999999998887764 78999999999888888999999


Q ss_pred             ecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh--hcccCCCCcchHHHHHHhCCCcEEEEE
Q psy2408         162 FFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK--NIHSNFILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       162 ~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                      +..++++.++. .+++++.++|+|||++++.++......+  .........  .......+..++.++|+++||..+.+.
T Consensus       152 ~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~  229 (272)
T PRK11873        152 SNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELP--EEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ  229 (272)
T ss_pred             EcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCC--HHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence            99999999998 9999999999999999999877655433  222111111  112345678899999999999988765


Q ss_pred             e
Q psy2408         239 D  239 (298)
Q Consensus       239 ~  239 (298)
                      .
T Consensus       230 ~  230 (272)
T PRK11873        230 P  230 (272)
T ss_pred             e
Confidence            4

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.85  E-value=2.3e-21  Score=150.75  Aligned_cols=137  Identities=32%  Similarity=0.477  Sum_probs=106.9

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      ..++.+|||+|||+|.++..+++ .+.+++|+|+|+.+++.           .+......+....+.++++||+|+++.+
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~   87 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAK-RGFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDV   87 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHH-TTSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHH-hCCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence            46788999999999999999977 57799999999999988           1244444444444456789999999999


Q ss_pred             ccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHH-Hh--hcccCCCCcchHHHHHHhCCCcEEE
Q psy2408         166 IFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYV-KK--NIHSNFILVEHYPDLLNKSGFELIK  236 (298)
Q Consensus       166 l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~~Gf~~~~  236 (298)
                      ++|++++ .+|+++.++|||||++++.++.......  ..+..+. ..  ..+..+++.+++..+++++||++++
T Consensus        88 l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~  160 (161)
T PF13489_consen   88 LEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSP--RSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE  160 (161)
T ss_dssp             GGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHH--HHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred             HhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhh--hHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence            9999999 9999999999999999999887532111  1111111 11  1355788999999999999999886

...

>PRK05785 hypothetical protein; Provisional

Probab=99.85  E-value=2.8e-20  Score=151.79  Aligned_cols=189  Identities=11%  Similarity=0.117  Sum_probs=129.0

Q ss_pred             chhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc
Q psy2408          31 GKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK  110 (298)
Q Consensus        31 ~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~  110 (298)
                      ..+.+++.||.. ++.||.... .+.++  .    ...   -...+.+.+....  .++.+|||+|||+|..+..+++..
T Consensus         7 ~~~~v~~~f~~i-A~~YD~~n~-~~s~g--~----~~~---wr~~~~~~l~~~~--~~~~~VLDlGcGtG~~~~~l~~~~   73 (226)
T PRK05785          7 TWEELQEAYNKI-PKAYDRANR-FISFN--Q----DVR---WRAELVKTILKYC--GRPKKVLDVAAGKGELSYHFKKVF   73 (226)
T ss_pred             cHHHHHHHHHhh-hHHHHHhhh-hccCC--C----cHH---HHHHHHHHHHHhc--CCCCeEEEEcCCCCHHHHHHHHhc
Confidence            456788999999 999987521 11110  0    000   1122333333332  246799999999999999998865


Q ss_pred             CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEE
Q psy2408         111 GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILT  189 (298)
Q Consensus       111 ~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~  189 (298)
                      +.+|+|+|+|++|++.|++.         ..++++|+.++|+++++||+|++..+++|++++ .++++++|+|||.  ++
T Consensus        74 ~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~--~~  142 (226)
T PRK05785         74 KYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ--VG  142 (226)
T ss_pred             CCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc--eE
Confidence            67999999999999999764         235789999999999999999999999999999 9999999999994  22


Q ss_pred             EEeCCCCCCCCChhHHHHHHHh---------------------hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcc
Q psy2408         190 LTDLPLLSVSKNDNKFKEYVKK---------------------NIHSNFILVEHYPDLLNKSGFELIKIDDITSHVM  245 (298)
Q Consensus       190 i~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~  245 (298)
                      +.++..+.... ...+..++..                     .....+.+.+++.++++++| ..+..+.++.++.
T Consensus       143 ile~~~p~~~~-~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~  217 (226)
T PRK05785        143 FIAMGKPDNVI-KRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLV  217 (226)
T ss_pred             EEEeCCCCcHH-HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEE
Confidence            33443222111 0111111000                     01234677899999999974 6677777776654

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.85  E-value=7.8e-20  Score=151.69  Aligned_cols=108  Identities=19%  Similarity=0.301  Sum_probs=95.3

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF  163 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~  163 (298)
                      .++.+|||+|||+|..+..+++.   .+++++|+|+|+.|++.|++++...+...+++++++|+.+++++  .+|+|+++
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~  132 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN  132 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence            57789999999999999888873   46899999999999999999998877777899999999988754  59999999


Q ss_pred             ccccccChH---HHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         164 ESIFHMNHS---AALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       164 ~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      .+++|+++.   .++++++++|+|||.+++.+....
T Consensus       133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~  168 (247)
T PRK15451        133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF  168 (247)
T ss_pred             hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence            999999754   899999999999999999985543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.85  E-value=6.3e-20  Score=146.93  Aligned_cols=147  Identities=17%  Similarity=0.204  Sum_probs=113.8

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD  158 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  158 (298)
                      .+++.+...++.+|||+|||+|..+..+++ .+.+|+|+|+|+.+++.+++.....++. ++++.+.|+.+++++ ++||
T Consensus        21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~-~g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD   97 (197)
T PRK11207         21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAA-NGFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFD-GEYD   97 (197)
T ss_pred             HHHHhcccCCCCcEEEECCCCCHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcC-CCcC
Confidence            344555556778999999999999999998 4789999999999999999998887774 588999999887664 6799


Q ss_pred             EEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEE
Q psy2408         159 GGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI  235 (298)
Q Consensus       159 ~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  235 (298)
                      +|++..++++++..   .+++++.++|+|||++++.........+.         ....+..++.+++.+.++  ||+++
T Consensus        98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~---------~~~~~~~~~~~el~~~~~--~~~~~  166 (197)
T PRK11207         98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC---------TVGFPFAFKEGELRRYYE--GWEMV  166 (197)
T ss_pred             EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC---------CCCCCCccCHHHHHHHhC--CCeEE
Confidence            99999999888743   99999999999999976654332221110         001234467788888887  89887


Q ss_pred             EEEe
Q psy2408         236 KIDD  239 (298)
Q Consensus       236 ~~~~  239 (298)
                      ...+
T Consensus       167 ~~~~  170 (197)
T PRK11207        167 KYNE  170 (197)
T ss_pred             EeeC
Confidence            7643

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.85  E-value=3.5e-19  Score=149.19  Aligned_cols=157  Identities=16%  Similarity=0.194  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      .+....+.++..+.+.++.+|||||||+|.++..+++.. +++|+|+|+|+.|++.++++.      .++.++.+|+..+
T Consensus        15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~   88 (258)
T PRK01683         15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASW   88 (258)
T ss_pred             HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhcc
Confidence            345567788888888889999999999999999999864 679999999999999998774      3588999999876


Q ss_pred             CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHH---------HHHhh--cccCCC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKE---------YVKKN--IHSNFI  218 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~  218 (298)
                      . +.++||+|+++.+++|++++ .+++++.++|+|||.+++..+....... ......         .....  ....+.
T Consensus        89 ~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~  166 (258)
T PRK01683         89 Q-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPS-HVLMREVAENGPWEQNLPDRGARRAPLP  166 (258)
T ss_pred             C-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHH-HHHHHHHHccCchHHHhccccccCcCCC
Confidence            4 45699999999999999999 9999999999999999987433211111 011111         11100  112345


Q ss_pred             CcchHHHHHHhCCCcEEE
Q psy2408         219 LVEHYPDLLNKSGFELIK  236 (298)
Q Consensus       219 ~~~~~~~~l~~~Gf~~~~  236 (298)
                      +..++.+++.++|+.+..
T Consensus       167 ~~~~~~~~l~~~g~~v~~  184 (258)
T PRK01683        167 PPHAYYDALAPAACRVDI  184 (258)
T ss_pred             CHHHHHHHHHhCCCceee
Confidence            667888999999987543

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.84  E-value=1.8e-20  Score=144.28  Aligned_cols=141  Identities=29%  Similarity=0.455  Sum_probs=110.9

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCCeeEEEe
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDSFDGGWF  162 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~  162 (298)
                      ..+.+|||+|||+|..+..+++.  .+.+++|+|+|+.|++.|+..++..+++ +++|+++|+.+++  ++ ++||+|++
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~   79 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIIS   79 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEE
Confidence            46789999999999999999953  3689999999999999999999998886 8999999999976  55 79999999


Q ss_pred             cccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHH--hhcccCCC---CcchHHHHHHhCC
Q psy2408         163 FESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVK--KNIHSNFI---LVEHYPDLLNKSG  231 (298)
Q Consensus       163 ~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~l~~~G  231 (298)
                      ..+++++.++ .+++++.++|+++|.+++.++.......  ........  ........   ..+++..+|+++|
T Consensus        80 ~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag  152 (152)
T PF13847_consen   80 NGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDELP--EQLEELMNLYSEVWSMIYIGNDKEEWKYILEEAG  152 (152)
T ss_dssp             ESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHHHH--HHHHHHHHHHHHHHHHCC---CCCGHHHHHHHTT
T ss_pred             cCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHHHH--HHHHHHHHHHHHHhhhhhcccCHHHHHHHHHhcC
Confidence            9999999999 9999999999999999998877222111  11111110  00011111   7888999999887

...

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.84  E-value=7.8e-20  Score=149.88  Aligned_cols=167  Identities=29%  Similarity=0.407  Sum_probs=128.2

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      .....++..+...++.+|||+|||+|..+..+++..+  .+++++|+++.+++.++++..   ...+++++.+|+.+.++
T Consensus        26 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~  102 (223)
T TIGR01934        26 LWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF  102 (223)
T ss_pred             HHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC
Confidence            3445566666666889999999999999999998754  599999999999999998875   33568999999998887


Q ss_pred             CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHH-------h-------------
Q psy2408         153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVK-------K-------------  211 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-------~-------------  211 (298)
                      +.++||+|++..++++++++ .+++++.++|+|||++++.+..................       .             
T Consensus       103 ~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (223)
T TIGR01934       103 EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLP  182 (223)
T ss_pred             CCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHH
Confidence            77899999999999999999 99999999999999999987754332110000000000       0             


Q ss_pred             hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCc
Q psy2408         212 NIHSNFILVEHYPDLLNKSGFELIKIDDITSHV  244 (298)
Q Consensus       212 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~  244 (298)
                      .....+.+.++|..+|+++||+++....+..+.
T Consensus       183 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~  215 (223)
T TIGR01934       183 ESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGV  215 (223)
T ss_pred             HHHHhCCCHHHHHHHHHHcCCccceeeeeecce
Confidence            001235678899999999999999888776653

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>KOG1270|consensus

Probab=99.84  E-value=4.7e-21  Score=152.57  Aligned_cols=151  Identities=26%  Similarity=0.328  Sum_probs=116.4

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCC-----ceEEEECCCCCCCCCCCCeeEEEec
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD-----KVNFLHGDALNLPFDNDSFDGGWFF  163 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~~fD~V~~~  163 (298)
                      |++|||+|||+|.++..|++ .|+.|+|+|+++.|++.|++......+..     ++++.+.|++...   +.||+|+|+
T Consensus        90 g~~ilDvGCGgGLLSepLAr-lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs  165 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLAR-LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS  165 (282)
T ss_pred             CceEEEeccCccccchhhHh-hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence            58899999999999999999 79999999999999999999944332222     3667777877763   559999999


Q ss_pred             ccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCC-----ChhHHHHHHHhh--cccCCCCcchHHHHHHhCCCcEE
Q psy2408         164 ESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSK-----NDNKFKEYVKKN--IHSNFILVEHYPDLLNKSGFELI  235 (298)
Q Consensus       164 ~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gf~~~  235 (298)
                      .+++|+.++ .++..+.+.|+|||++++++.+..-...     ..+....+.+..  ....+.++.++..+++.+|+++.
T Consensus       166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~  245 (282)
T KOG1270|consen  166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVN  245 (282)
T ss_pred             HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchh
Confidence            999999999 9999999999999999999887543111     001111111111  12357889999999999999988


Q ss_pred             EEEeCCCC
Q psy2408         236 KIDDITSH  243 (298)
Q Consensus       236 ~~~~~~~~  243 (298)
                      .+......
T Consensus       246 ~v~G~~y~  253 (282)
T KOG1270|consen  246 DVVGEVYN  253 (282)
T ss_pred             hhhccccc
Confidence            77655444

>TIGR00740 methyltransferase, putative

Probab=99.84  E-value=9.7e-20  Score=150.70  Aligned_cols=147  Identities=16%  Similarity=0.141  Sum_probs=114.2

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF  163 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~  163 (298)
                      .++.+|||+|||+|..+..+++.   ++++++|+|+|+.|++.|++++...+...+++++++|+.+++++  .+|+|++.
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~  129 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN  129 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence            47789999999999999999875   36799999999999999999988766656799999999988764  58999999


Q ss_pred             ccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh-------------------hcccCCCCcc
Q psy2408         164 ESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK-------------------NIHSNFILVE  221 (298)
Q Consensus       164 ~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~  221 (298)
                      .+++|+++.   .++++++++|+|||.+++.+...................                   .....+.+.+
T Consensus       130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~  209 (239)
T TIGR00740       130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIE  209 (239)
T ss_pred             cchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHH
Confidence            999999754   999999999999999999987543322111111111100                   0123467888


Q ss_pred             hHHHHHHhCCCcEE
Q psy2408         222 HYPDLLNKSGFELI  235 (298)
Q Consensus       222 ~~~~~l~~~Gf~~~  235 (298)
                      ++.++++++||..+
T Consensus       210 ~~~~~l~~aGF~~~  223 (239)
T TIGR00740       210 THKARLKNVGFSHV  223 (239)
T ss_pred             HHHHHHHHcCCchH
Confidence            99999999999743

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.84  E-value=2e-20  Score=132.10  Aligned_cols=94  Identities=45%  Similarity=0.626  Sum_probs=83.3

Q ss_pred             EEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH
Q psy2408          93 IDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS  172 (298)
Q Consensus        93 LDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~  172 (298)
                      ||+|||+|..+..+++..+.+|+++|+|+.+++.++++....    ++.++++|+.++|+++++||+|++..+++|++++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~   76 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP   76 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeeccCH
Confidence            899999999999999965789999999999999999987653    3669999999999999999999999999999888


Q ss_pred             -HHHHHHhhcccCCcEEEE
Q psy2408         173 -AALNEARRVLKSGSILTL  190 (298)
Q Consensus       173 -~~l~~~~r~LkpgG~l~i  190 (298)
                       .+++++.|+|||||+++|
T Consensus        77 ~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   77 EAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHcCcCeEEeC
Confidence             999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.83  E-value=8.1e-20  Score=149.19  Aligned_cols=167  Identities=23%  Similarity=0.318  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHhCC--CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC
Q psy2408          71 QGSDKLSRIMINKTS--ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL  148 (298)
Q Consensus        71 ~~~~~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~  148 (298)
                      .....+...+++.+.  ..++.+|||+|||+|.++..++. .+.+++|+|+|+.++..|++++...+...++.+.+.|+.
T Consensus        36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~  114 (219)
T TIGR02021        36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAK-RGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL  114 (219)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence            445566777777776  56788999999999999999988 477999999999999999999987776567999999998


Q ss_pred             CCCCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh------hcccCCCC
Q psy2408         149 NLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK------NIHSNFIL  219 (298)
Q Consensus       149 ~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  219 (298)
                      .++   ++||+|++..+++|++..   .+++++.+++++++.+.+....  ...   .....+...      .....+++
T Consensus       115 ~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~  186 (219)
T TIGR02021       115 SLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKT--AWL---AFLKMIGELFPGSSRATSAYLHP  186 (219)
T ss_pred             hCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc--hHH---HHHHHHHhhCcCcccccceEEec
Confidence            865   789999999999998754   8899999999877655543211  100   111111111      11124568


Q ss_pred             cchHHHHHHhCCCcEEEEEeCCCCccc
Q psy2408         220 VEHYPDLLNKSGFELIKIDDITSHVMP  246 (298)
Q Consensus       220 ~~~~~~~l~~~Gf~~~~~~~~~~~~~~  246 (298)
                      .+++.++++++||.++.......+...
T Consensus       187 ~~~~~~~l~~~Gf~v~~~~~~~~~~~~  213 (219)
T TIGR02021       187 MTDLERALGELGWKIVREGLVSTGFYN  213 (219)
T ss_pred             HHHHHHHHHHcCceeeeeecccccchh
Confidence            899999999999999998877666544

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.83  E-value=3.2e-19  Score=142.60  Aligned_cols=147  Identities=12%  Similarity=0.120  Sum_probs=112.9

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD  158 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  158 (298)
                      .+++.+...++.+|||+|||+|..+..+++ .+.+|+|+|+|+.+++.+++++...++.  +.+...|+...+++ ++||
T Consensus        21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~-~g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~-~~fD   96 (195)
T TIGR00477        21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSL-AGYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN-EDYD   96 (195)
T ss_pred             HHHHHhccCCCCcEEEeCCCCCHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc-CCCC
Confidence            344445555667999999999999999998 5789999999999999999998877763  77888888766654 6899


Q ss_pred             EEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEE
Q psy2408         159 GGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI  235 (298)
Q Consensus       159 ~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  235 (298)
                      +|+++.++++++..   .+++++.++|+|||++++.+.......+  .       ....+..++.+++.+.+.  +|+++
T Consensus        97 ~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~--~-------~~~~~~~~~~~el~~~f~--~~~~~  165 (195)
T TIGR00477        97 FIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYP--C-------HMPFSFTFKEDELRQYYA--DWELL  165 (195)
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCC--C-------CCCcCccCCHHHHHHHhC--CCeEE
Confidence            99999999988643   9999999999999997766543322211  0       011234577888988886  58888


Q ss_pred             EEEeC
Q psy2408         236 KIDDI  240 (298)
Q Consensus       236 ~~~~~  240 (298)
                      ...+.
T Consensus       166 ~~~e~  170 (195)
T TIGR00477       166 KYNEA  170 (195)
T ss_pred             Eeecc
Confidence            77643

Part of a tellurite-reducing operon tehA and tehB

>KOG4300|consensus

Probab=99.83  E-value=1.5e-19  Score=138.50  Aligned_cols=166  Identities=17%  Similarity=0.174  Sum_probs=124.6

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceE-EEECCCCCCC-CC
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVN-FLHGDALNLP-FD  153 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~-~~~~d~~~~~-~~  153 (298)
                      +...+...+.......|||+|||||..-.+.--.++++||++|+++.|-+.+..++.+.. +.++. |++++.+++| ++
T Consensus        64 lFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l~  142 (252)
T KOG4300|consen   64 LFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADGENLPQLA  142 (252)
T ss_pred             HHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeechhcCcccc
Confidence            333333344444455789999999999888776578999999999999999999998874 45666 9999999997 78


Q ss_pred             CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh----hcccCCCCcchHHHHHH
Q psy2408         154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK----NIHSNFILVEHYPDLLN  228 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~  228 (298)
                      +++||.|++..+++...++ +.|+++.|+|+|||++++.+............+......    ......++++.+ +.|+
T Consensus       143 d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~-e~Le  221 (252)
T KOG4300|consen  143 DGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTG-ELLE  221 (252)
T ss_pred             cCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHH-HHhh
Confidence            9999999999999999999 999999999999999999998866544322222222222    111234555544 5678


Q ss_pred             hCCCcEEEEEeCCCC
Q psy2408         229 KSGFELIKIDDITSH  243 (298)
Q Consensus       229 ~~Gf~~~~~~~~~~~  243 (298)
                      .+-|...+......+
T Consensus       222 da~f~~~~~kr~~~~  236 (252)
T KOG4300|consen  222 DAEFSIDSCKRFNFG  236 (252)
T ss_pred             hcccccchhhcccCC
Confidence            888988776654433

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.82  E-value=2.7e-19  Score=130.45  Aligned_cols=104  Identities=36%  Similarity=0.559  Sum_probs=89.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC-CCCCCCCCCeeEEEecc-
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA-LNLPFDNDSFDGGWFFE-  164 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~fD~V~~~~-  164 (298)
                      |+.+|||+|||+|..+..+++. .+++++|+|+|+.+++.+++++...+..+++++++.|+ ..... .+.||+|++.. 
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~   79 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF   79 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence            5789999999999999999995 68899999999999999999997778888999999999 34333 36799999998 


Q ss_pred             cccccC---hH-HHHHHHhhcccCCcEEEEEe
Q psy2408         165 SIFHMN---HS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       165 ~l~~~~---~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +++++.   +. .+++++.+.|+|||++++.+
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            554333   33 99999999999999999975

...

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.82  E-value=2.8e-18  Score=142.16  Aligned_cols=157  Identities=23%  Similarity=0.336  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHhCCC---CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC
Q psy2408          72 GSDKLSRIMINKTSI---TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA  147 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~  147 (298)
                      .+..+...+++.+..   ..+.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++....     .++.++.+|+
T Consensus        15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~   89 (240)
T TIGR02072        15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDA   89 (240)
T ss_pred             HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecch
Confidence            344444555544432   345799999999999999998864 4679999999999999987754     3688999999


Q ss_pred             CCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHH
Q psy2408         148 LNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDL  226 (298)
Q Consensus       148 ~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (298)
                      .+.++++++||+|++..+++|+.++ .++.++.++|+|||.+++.++.....    ......... ....+.+.+++.++
T Consensus        90 ~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~  164 (240)
T TIGR02072        90 EKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTL----HELRQSFGQ-HGLRYLSLDELKAL  164 (240)
T ss_pred             hhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCH----HHHHHHHHH-hccCCCCHHHHHHH
Confidence            9988888899999999999999999 99999999999999999987654321    111221211 23467788899999


Q ss_pred             HHhCCCcEEEEEe
Q psy2408         227 LNKSGFELIKIDD  239 (298)
Q Consensus       227 l~~~Gf~~~~~~~  239 (298)
                      +.++ |..+....
T Consensus       165 l~~~-f~~~~~~~  176 (240)
T TIGR02072       165 LKNS-FELLTLEE  176 (240)
T ss_pred             HHHh-cCCcEEEE
Confidence            9988 87665543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.82  E-value=1.6e-18  Score=148.60  Aligned_cols=159  Identities=14%  Similarity=0.253  Sum_probs=124.0

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      ....+++.+.++++.+|||||||+|.++..+++.. +.+++++|. +.+++.+++++...++.++++++.+|+.+.+++ 
T Consensus       137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-  214 (306)
T TIGR02716       137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-  214 (306)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-
Confidence            45567777778888999999999999999999874 679999997 789999999999999888999999999876554 


Q ss_pred             CCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCCh-hHHHHHHHhh----cccCCCCcchHHHH
Q psy2408         155 DSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKND-NKFKEYVKKN----IHSNFILVEHYPDL  226 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~  226 (298)
                       .+|+|++..+++++.+.   .+++++++.|+|||++++.++......... ..........    ....+.+.+++.++
T Consensus       215 -~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l  293 (306)
T TIGR02716       215 -EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEI  293 (306)
T ss_pred             -CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHH
Confidence             37999999999988765   799999999999999999998665433211 1111111100    11134457899999


Q ss_pred             HHhCCCcEEEE
Q psy2408         227 LNKSGFELIKI  237 (298)
Q Consensus       227 l~~~Gf~~~~~  237 (298)
                      |+++||+.+..
T Consensus       294 l~~aGf~~v~~  304 (306)
T TIGR02716       294 LESLGYKDVTM  304 (306)
T ss_pred             HHHcCCCeeEe
Confidence            99999997754

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.81  E-value=1.2e-18  Score=147.87  Aligned_cols=204  Identities=17%  Similarity=0.185  Sum_probs=127.5

Q ss_pred             ccccCCCCchhhHHhhhcCCcc-cccccccCCceeE--eeccCCCCCCcHHHHHHHHHHHHHHhCCC---CCCCeEEEeC
Q psy2408          23 IKENKGNKGKKTVATLYDSPEG-QIGSVLFGGHMHW--GYWDESNSKDNFAQGSDKLSRIMINKTSI---TKGQRFIDIG   96 (298)
Q Consensus        23 ~~~~~~~~~~~~~~~~yd~~~~-~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~vLDiG   96 (298)
                      ...+......+.++++||.. + +.|..+++.....  ..+..   ..    ......+.+++.+..   .++.+|||+|
T Consensus        81 ~~~~~~~~~~~~V~~~Fd~~-a~~~w~~iy~~~d~v~~~~l~~---~~----~~~~~v~~~l~~l~~~~~~~~~~VLDlG  152 (315)
T PLN02585         81 QAEEVGGDDKEVVREYFNTT-GFERWRKIYGETDEVNKVQLDI---RL----GHAQTVEKVLLWLAEDGSLAGVTVCDAG  152 (315)
T ss_pred             hhhhhHHHHHHHHHHHhccc-chhhHHHhcCCccccCceeeec---cc----ChHHHHHHHHHHHHhcCCCCCCEEEEec
Confidence            33444566788999999986 3 2232333321110  01110   00    112233334444322   2578999999


Q ss_pred             CCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC----CCceEEEECCCCCCCCCCCCeeEEEecccccccChH
Q psy2408          97 CGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL----LDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS  172 (298)
Q Consensus        97 cG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~  172 (298)
                      ||+|.++..+++ .+.+|+|+|+|+.|++.+++++...+.    ..++.+...|+..+   +++||+|++..+++|+++.
T Consensus       153 cGtG~~a~~la~-~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~  228 (315)
T PLN02585        153 CGTGSLAIPLAL-EGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQD  228 (315)
T ss_pred             CCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHH
Confidence            999999999998 578999999999999999999876421    13578888887654   4789999999999999876


Q ss_pred             ---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhc------ccCCCCcchHHHHHHhCCCcEEEEEeCCCC
Q psy2408         173 ---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNI------HSNFILVEHYPDLLNKSGFELIKIDDITSH  243 (298)
Q Consensus       173 ---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  243 (298)
                         .+++.+.+ +.++|. ++..... . .. ......+.....      ...+++.+++.++|+++||++...+.....
T Consensus       229 ~~~~ll~~l~~-l~~g~l-iIs~~p~-~-~~-~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~~~~~  303 (315)
T PLN02585        229 KADGMIAHLAS-LAEKRL-IISFAPK-T-LY-YDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARREMTATQ  303 (315)
T ss_pred             HHHHHHHHHHh-hcCCEE-EEEeCCc-c-hH-HHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEEeecc
Confidence               56677765 455544 4443221 1 10 011111111111      123457899999999999998876654433

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.80  E-value=1.3e-18  Score=143.43  Aligned_cols=200  Identities=19%  Similarity=0.255  Sum_probs=130.6

Q ss_pred             CchhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCC---CCCCCeEEEeCCCCCHHHHHH
Q psy2408          30 KGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTS---ITKGQRFIDIGCGFGLSGIRL  106 (298)
Q Consensus        30 ~~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~vLDiGcG~G~~~~~l  106 (298)
                      .....+.++||......++..++...    +..  -...+..........++..+.   ..++.+|||+|||+|..+..+
T Consensus         8 ~~~~~v~~~~~~~~~~~w~~~y~~~~----~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l   81 (230)
T PRK07580          8 EHKSEVRTYFNRTGFDRWARIYSDAP----VSK--VRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPL   81 (230)
T ss_pred             hchhhhhHHHhhhccchHHHhhCcCc----hhH--HHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHH
Confidence            44567888998763355555443311    000  000111122333334444332   356789999999999999999


Q ss_pred             HHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhccc
Q psy2408         107 AKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLK  183 (298)
Q Consensus       107 ~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~Lk  183 (298)
                      ++ .+.+|+|+|+|+.+++.|++++...+...++++..+|+..   .+++||+|++..+++|++++   .+++++.+.++
T Consensus        82 ~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~  157 (230)
T PRK07580         82 AR-RGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTR  157 (230)
T ss_pred             HH-cCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcC
Confidence            88 4678999999999999999999887765679999999433   35789999999999998766   78888888765


Q ss_pred             CCcEEEEEeCCCCCCCCChhHHHHHHHh------hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCc
Q psy2408         184 SGSILTLTDLPLLSVSKNDNKFKEYVKK------NIHSNFILVEHYPDLLNKSGFELIKIDDITSHV  244 (298)
Q Consensus       184 pgG~l~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~  244 (298)
                      +++.+.+  ......   ......+...      .....+.+..++.++++++||++.....+..+.
T Consensus       158 ~~~~i~~--~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~  219 (230)
T PRK07580        158 GSLIFTF--APYTPL---LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERISSGF  219 (230)
T ss_pred             CeEEEEE--CCccHH---HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeeccchh
Confidence            4443322  111110   0111111110      111235677889999999999999988877663

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.79  E-value=5.7e-18  Score=132.47  Aligned_cols=144  Identities=17%  Similarity=0.257  Sum_probs=105.9

Q ss_pred             HHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEE
Q psy2408          81 INKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGG  160 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V  160 (298)
                      ++.+..-++.++||+|||.|+.+.+|++ .|..|+++|.|+..++.+++.+...+++  ++..+.|+.+..++ +.||+|
T Consensus        23 ~~a~~~~~~g~~LDlgcG~GRNalyLA~-~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~I   98 (192)
T PF03848_consen   23 LEAVPLLKPGKALDLGCGEGRNALYLAS-QGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDFI   98 (192)
T ss_dssp             HHHCTTS-SSEEEEES-TTSHHHHHHHH-TT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEEE
T ss_pred             HHHHhhcCCCcEEEcCCCCcHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCEE
Confidence            3334444567999999999999999999 6999999999999999999999888875  99999999887765 689999


Q ss_pred             EecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEE
Q psy2408         161 WFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKI  237 (298)
Q Consensus       161 ~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  237 (298)
                      ++..++++++.+   .+++++...++|||++++..+......+  .       .......+...++...+.  ||+++..
T Consensus        99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p--~-------~~~~~f~~~~~EL~~~y~--dW~il~y  167 (192)
T PF03848_consen   99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYP--C-------PSPFPFLLKPGELREYYA--DWEILKY  167 (192)
T ss_dssp             EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS-----------SS--S--B-TTHHHHHTT--TSEEEEE
T ss_pred             EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCC--C-------CCCCCcccCHHHHHHHhC--CCeEEEE
Confidence            999999999876   8999999999999999987665333222  0       011233456677877775  7998875


Q ss_pred             Ee
Q psy2408         238 DD  239 (298)
Q Consensus       238 ~~  239 (298)
                      .+
T Consensus       168 ~E  169 (192)
T PF03848_consen  168 NE  169 (192)
T ss_dssp             EE
T ss_pred             Ec
Confidence            44

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.78  E-value=3.8e-18  Score=140.10  Aligned_cols=167  Identities=20%  Similarity=0.227  Sum_probs=121.9

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS  156 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  156 (298)
                      .+.+...+..-.|.+|||||||.|..+..++......|+|+|++.....+.+..-.-.+....+.+....+.++|. .+.
T Consensus       104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~  182 (315)
T PF08003_consen  104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGA  182 (315)
T ss_pred             HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCC
Confidence            4445555544478999999999999999999854457999999998877755444433433334455457777776 689


Q ss_pred             eeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHH-H-HHHHhhcccCCCCcchHHHHHHhCCCc
Q psy2408         157 FDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKF-K-EYVKKNIHSNFILVEHYPDLLNKSGFE  233 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~~Gf~  233 (298)
                      ||+|+|++||+|..+| ..|.+++..|+|||.+++.+....+... .... . .+......-...+...+..+|+++||.
T Consensus       183 FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~-~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~  261 (315)
T PF08003_consen  183 FDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDEN-TVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFK  261 (315)
T ss_pred             cCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCc-eEEccCCcccCCCceEEeCCHHHHHHHHHHcCCc
Confidence            9999999999999999 9999999999999999998877665333 0000 0 111111112245788899999999999


Q ss_pred             EEEEEeCCCCcc
Q psy2408         234 LIKIDDITSHVM  245 (298)
Q Consensus       234 ~~~~~~~~~~~~  245 (298)
                      .+++.+......
T Consensus       262 ~v~~v~~~~Tt~  273 (315)
T PF08003_consen  262 DVRCVDVSPTTI  273 (315)
T ss_pred             eEEEecCccCCH
Confidence            999888775543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.78  E-value=6.4e-18  Score=143.26  Aligned_cols=137  Identities=18%  Similarity=0.185  Sum_probs=109.0

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccc
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIF  167 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~  167 (298)
                      ++.+|||+|||+|..+.++++ .+.+|+|+|+|+.+++.+++++...++  ++++...|+...++ +++||+|++..+++
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~-~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~~~vl~  195 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLAL-LGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILSTVVLM  195 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEEcchhh
Confidence            445999999999999999998 578999999999999999999988776  58888999877655 57899999999999


Q ss_pred             ccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEe
Q psy2408         168 HMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDD  239 (298)
Q Consensus       168 ~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  239 (298)
                      +++..   .+++++.++|+|||++++.........+         ........++..++.+.+.  +|+++...+
T Consensus       196 ~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~---------~~~p~~~~~~~~el~~~~~--~~~i~~~~e  259 (287)
T PRK12335        196 FLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP---------CPMPFSFTFKEGELKDYYQ--DWEIVKYNE  259 (287)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC---------CCCCCCcccCHHHHHHHhC--CCEEEEEec
Confidence            98743   9999999999999997775443222211         0011234577888988886  498888754

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.78  E-value=1.2e-17  Score=137.91  Aligned_cols=162  Identities=23%  Similarity=0.312  Sum_probs=121.4

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-CCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-FDND  155 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~  155 (298)
                      ...+...+...++.+|||+|||+|.++..+++ .+++++++|+++.+++.+++++...+.  ++.+...|+.+++ ...+
T Consensus        37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~  113 (233)
T PRK05134         37 LNYIREHAGGLFGKRVLDVGCGGGILSESMAR-LGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPG  113 (233)
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHH-cCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCC
Confidence            34555555556788999999999999998888 578999999999999999998876554  4788888887764 2457


Q ss_pred             CeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHH-HHHHHh------hcccCCCCcchHHHHH
Q psy2408         156 SFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKF-KEYVKK------NIHSNFILVEHYPDLL  227 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~l  227 (298)
                      +||+|++..+++|++++ .+++.+.++|+|||.+++..+............ ......      .....+++.+++.+++
T Consensus       114 ~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  193 (233)
T PRK05134        114 QFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWL  193 (233)
T ss_pred             CccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHH
Confidence            89999999999999999 999999999999999998866422110000000 000000      1123467888999999


Q ss_pred             HhCCCcEEEEEeCC
Q psy2408         228 NKSGFELIKIDDIT  241 (298)
Q Consensus       228 ~~~Gf~~~~~~~~~  241 (298)
                      +++||.++....+.
T Consensus       194 ~~~Gf~~v~~~~~~  207 (233)
T PRK05134        194 RQAGLEVQDITGLH  207 (233)
T ss_pred             HHCCCeEeeeeeEE
Confidence            99999999876544

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.78  E-value=9.4e-18  Score=132.21  Aligned_cols=126  Identities=21%  Similarity=0.225  Sum_probs=103.5

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecc
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE  164 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~  164 (298)
                      ++++.+|||+|||+|..+..++.. .+++|+++|+|+.+++.+++++...++++ ++++++|+.+++. .++||+|++..
T Consensus        43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-~~~fDlV~~~~  120 (187)
T PRK00107         43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-EEKFDVVTSRA  120 (187)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-CCCccEEEEcc
Confidence            345889999999999999999875 46899999999999999999999988854 9999999998865 67999999864


Q ss_pred             cccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeC
Q psy2408         165 SIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       165 ~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  240 (298)
                          +.+. .+++.+.++|+|||++++.....                       ...++.++.+..|+.+.....+
T Consensus       121 ----~~~~~~~l~~~~~~LkpGG~lv~~~~~~-----------------------~~~~l~~~~~~~~~~~~~~~~~  170 (187)
T PRK00107        121 ----VASLSDLVELCLPLLKPGGRFLALKGRD-----------------------PEEEIAELPKALGGKVEEVIEL  170 (187)
T ss_pred             ----ccCHHHHHHHHHHhcCCCeEEEEEeCCC-----------------------hHHHHHHHHHhcCceEeeeEEE
Confidence                3456 99999999999999999875331                       1234666777779887766554

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.76  E-value=1.3e-17  Score=128.49  Aligned_cols=153  Identities=19%  Similarity=0.224  Sum_probs=115.4

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-C-CCCCCC
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-L-PFDNDS  156 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~  156 (298)
                      .|.+..  +|+.+|||+|||.|.+...|.+..+++..|+|++++.+..|.++    |    ++++++|+.+ + .+++++
T Consensus         6 ~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~d~s   75 (193)
T PF07021_consen    6 IIAEWI--EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFPDQS   75 (193)
T ss_pred             HHHHHc--CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCCCCC
Confidence            344444  68999999999999999999987789999999999998888765    3    6799999976 3 588999


Q ss_pred             eeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCC-----------CCCChhHHHHHHHhhcccCCCCcchHH
Q psy2408         157 FDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLS-----------VSKNDNKFKEYVKKNIHSNFILVEHYP  224 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (298)
                      ||.|+++.+++++..| .+|+++.|+   |...+++-++...           .++....+..-+-..+..++.|..+++
T Consensus        76 FD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe  152 (193)
T PF07021_consen   76 FDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFE  152 (193)
T ss_pred             ccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHH
Confidence            9999999999999999 999999877   4455665554211           111001111001112234578899999


Q ss_pred             HHHHhCCCcEEEEEeCCCCc
Q psy2408         225 DLLNKSGFELIKIDDITSHV  244 (298)
Q Consensus       225 ~~l~~~Gf~~~~~~~~~~~~  244 (298)
                      +++++.|+++++...+....
T Consensus       153 ~lc~~~~i~I~~~~~~~~~~  172 (193)
T PF07021_consen  153 DLCRELGIRIEERVFLDGGR  172 (193)
T ss_pred             HHHHHCCCEEEEEEEEcCCC
Confidence            99999999999988777665

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.76  E-value=1.5e-17  Score=128.68  Aligned_cols=157  Identities=17%  Similarity=0.170  Sum_probs=123.8

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      =...++..+.+.+..+|.|+|||+|..+..|+++ +++.++|+|-|++|++.|+++.      .+++|..+|+..+. +.
T Consensus        18 Pa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~-p~   90 (257)
T COG4106          18 PARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWK-PE   90 (257)
T ss_pred             cHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcC-CC
Confidence            3567788888888999999999999999999998 5789999999999999998774      46899999999985 46


Q ss_pred             CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHH---------Hh--hcccCCCCcch
Q psy2408         155 DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYV---------KK--NIHSNFILVEH  222 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~  222 (298)
                      ...|+++++.+++++++- .+|..+...|.|||.|.+.-+......+ -.......         ..  .......++..
T Consensus        91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~deps-H~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~  169 (257)
T COG4106          91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPS-HRLMRETADEAPFAQELGGRGLTRAPLPSPAA  169 (257)
T ss_pred             CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchh-HHHHHHHHhcCchhhhhCccccccCCCCCHHH
Confidence            789999999999999999 9999999999999999998666544332 11111111         11  11345667888


Q ss_pred             HHHHHHhCCCcEEEEEeC
Q psy2408         223 YPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       223 ~~~~l~~~Gf~~~~~~~~  240 (298)
                      +-++|...+=++...+..
T Consensus       170 Yy~lLa~~~~rvDiW~T~  187 (257)
T COG4106         170 YYELLAPLACRVDIWHTT  187 (257)
T ss_pred             HHHHhCcccceeeeeeee
Confidence            888888877665554443

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.75  E-value=6.1e-17  Score=132.83  Aligned_cols=148  Identities=26%  Similarity=0.366  Sum_probs=115.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC-CCCeeEEEecccc
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD-NDSFDGGWFFESI  166 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l  166 (298)
                      .+.+|||+|||+|.++..+++ .+.+++++|+++.+++.++.++...+.. ++.+...|+.+++.. .++||+|++..++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~l  122 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLAR-LGANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEVL  122 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence            478999999999999998887 5678999999999999999988776542 588899998876543 3789999999999


Q ss_pred             cccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHH-----HHh------hcccCCCCcchHHHHHHhCCCcE
Q psy2408         167 FHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEY-----VKK------NIHSNFILVEHYPDLLNKSGFEL  234 (298)
Q Consensus       167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~l~~~Gf~~  234 (298)
                      +++.++ .+++++.++|+|||.+++........    ......     ...      .....+.+..++.++++++||++
T Consensus       123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i  198 (224)
T TIGR01983       123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTPK----SYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRV  198 (224)
T ss_pred             HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCch----HHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCee
Confidence            999999 99999999999999999886643210    111110     000      11224567788999999999999


Q ss_pred             EEEEeCC
Q psy2408         235 IKIDDIT  241 (298)
Q Consensus       235 ~~~~~~~  241 (298)
                      ++...+.
T Consensus       199 ~~~~~~~  205 (224)
T TIGR01983       199 KDVKGLV  205 (224)
T ss_pred             eeeeeEE
Confidence            9887544

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.74  E-value=6.9e-18  Score=120.53  Aligned_cols=93  Identities=37%  Similarity=0.532  Sum_probs=80.2

Q ss_pred             EEEeCCCCCHHHHHHHHhc--C--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec-ccc
Q psy2408          92 FIDIGCGFGLSGIRLAKAK--G--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF-ESI  166 (298)
Q Consensus        92 vLDiGcG~G~~~~~l~~~~--~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~-~~l  166 (298)
                      |||+|||+|..+..+++..  +  .+++|+|+|++|++.++++....+.  ++++++.|+.+++..+++||+|++. .++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~   78 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL   78 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence            7999999999999999864  3  7999999999999999999987665  6899999999988778899999995 559


Q ss_pred             cccChH---HHHHHHhhcccCCc
Q psy2408         167 FHMNHS---AALNEARRVLKSGS  186 (298)
Q Consensus       167 ~~~~~~---~~l~~~~r~LkpgG  186 (298)
                      +|+.+.   .+++++.++|+|||
T Consensus        79 ~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   79 HHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCC
Confidence            998876   99999999999998

>KOG1271|consensus

Probab=99.73  E-value=5e-17  Score=122.29  Aligned_cols=145  Identities=19%  Similarity=0.281  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHhCC---CCCCC-eEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC
Q psy2408          71 QGSDKLSRIMINKTS---ITKGQ-RFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG  145 (298)
Q Consensus        71 ~~~~~~~~~l~~~~~---~~~~~-~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~  145 (298)
                      .+..++++++.+...   +.... +|||+|||.|.+...|++. +...++|+|.|+.+++.|+..++..+.++.|+|.+.
T Consensus        46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~  125 (227)
T KOG1271|consen   46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL  125 (227)
T ss_pred             cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe
Confidence            467788888887765   34444 9999999999999999986 345699999999999999999999999888999999


Q ss_pred             CCCCCCCCCCCeeEEEecccccccC---h-----H-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccC
Q psy2408         146 DALNLPFDNDSFDGGWFFESIFHMN---H-----S-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSN  216 (298)
Q Consensus       146 d~~~~~~~~~~fD~V~~~~~l~~~~---~-----~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (298)
                      |+.+..+..++||+|+--.++..+.   +     + .++..+.++|+|||+++|...+                      
T Consensus       126 DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN----------------------  183 (227)
T KOG1271|consen  126 DITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN----------------------  183 (227)
T ss_pred             eccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC----------------------
Confidence            9998767778999998765554432   2     1 6788899999999999997655                      


Q ss_pred             CCCcchHHHHHHhCCCcEEEEE
Q psy2408         217 FILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       217 ~~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                       ++.+++.+.++..||......
T Consensus       184 -~T~dELv~~f~~~~f~~~~tv  204 (227)
T KOG1271|consen  184 -FTKDELVEEFENFNFEYLSTV  204 (227)
T ss_pred             -ccHHHHHHHHhcCCeEEEEee
Confidence             355688888888888766543

>PRK06202 hypothetical protein; Provisional

Probab=99.73  E-value=5.6e-17  Score=133.58  Aligned_cols=147  Identities=16%  Similarity=0.131  Sum_probs=107.8

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHh-----cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKA-----KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGW  161 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~  161 (298)
                      .++.+|||+|||+|.++..+++.     .+.+++|+|+|+.|++.|+++....    ++.+...+...++.++++||+|+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V~  134 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVVT  134 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEEE
Confidence            56789999999999999888763     1359999999999999998875432    35677777766666678999999


Q ss_pred             ecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHH----H-H-------hhcccCCCCcchHHHH
Q psy2408         162 FFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEY----V-K-------KNIHSNFILVEHYPDL  226 (298)
Q Consensus       162 ~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~----~-~-------~~~~~~~~~~~~~~~~  226 (298)
                      ++.+++|++++   .+++++.++++  |.+++.++.......  ......    . .       ......+++.+++.++
T Consensus       135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~l  210 (232)
T PRK06202        135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAY--ALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAAL  210 (232)
T ss_pred             ECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHH--HHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHH
Confidence            99999999986   79999999998  667776666432100  000000    0 0       0112357889999999


Q ss_pred             HHhCCCcEEEEEeCCC
Q psy2408         227 LNKSGFELIKIDDITS  242 (298)
Q Consensus       227 l~~~Gf~~~~~~~~~~  242 (298)
                      +++ ||++.....+..
T Consensus       211 l~~-Gf~~~~~~~~~~  225 (232)
T PRK06202        211 APQ-GWRVERQWPFRY  225 (232)
T ss_pred             hhC-CCeEEeccceee
Confidence            999 999887655443

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.73  E-value=3.9e-16  Score=125.84  Aligned_cols=149  Identities=15%  Similarity=0.138  Sum_probs=108.7

Q ss_pred             HHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc-----------CCCCceEEEECCCC
Q psy2408          80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE-----------GLLDKVNFLHGDAL  148 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~-----------~~~~~i~~~~~d~~  148 (298)
                      .+..+.+.++.+|||+|||.|..+..|++ .|..|+|+|+|+.+++.+.......           .-..+++++++|+.
T Consensus        26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~-~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~  104 (213)
T TIGR03840        26 HWPALGLPAGARVFVPLCGKSLDLAWLAE-QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFF  104 (213)
T ss_pred             HHHhhCCCCCCeEEEeCCCchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCC
Confidence            33443335677999999999999999998 6999999999999999864321100           00235899999999


Q ss_pred             CCCCC-CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHH
Q psy2408         149 NLPFD-NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP  224 (298)
Q Consensus       149 ~~~~~-~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (298)
                      +++.. .+.||.|+-..+++|++..   .+++.+.++|+|||++++..+.......           ...+...+.+++.
T Consensus       105 ~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~-----------~gpp~~~~~~eL~  173 (213)
T TIGR03840       105 ALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM-----------AGPPFSVSPAEVE  173 (213)
T ss_pred             CCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC-----------CCcCCCCCHHHHH
Confidence            87532 4679999999999999876   8999999999999987777665422111           1123457788888


Q ss_pred             HHHHhCCCcEEEEEeCC
Q psy2408         225 DLLNKSGFELIKIDDIT  241 (298)
Q Consensus       225 ~~l~~~Gf~~~~~~~~~  241 (298)
                      +++. .+|.+.......
T Consensus       174 ~~f~-~~~~i~~~~~~~  189 (213)
T TIGR03840       174 ALYG-GHYEIELLESRD  189 (213)
T ss_pred             HHhc-CCceEEEEeecc
Confidence            8886 356666655433

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.73  E-value=6e-17  Score=147.22  Aligned_cols=149  Identities=14%  Similarity=0.159  Sum_probs=114.0

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC--CCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN--LPFDN  154 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~  154 (298)
                      ...+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++...   +..+++.++++|+..  +++++
T Consensus        26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~~~  101 (475)
T PLN02336         26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNISD  101 (475)
T ss_pred             hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCCCC
Confidence            456667776667789999999999999999984 679999999999999876532   223578999999963  56778


Q ss_pred             CCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCC
Q psy2408         155 DSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG  231 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  231 (298)
                      ++||+|++..+++|+++.   .+++++.++|+|||++++.+........    .   ........+.....|..++.++|
T Consensus       102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~----~---~~~~~~~~~~~~~~~~~~f~~~~  174 (475)
T PLN02336        102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGD----S---KRKNNPTHYREPRFYTKVFKECH  174 (475)
T ss_pred             CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCc----c---cccCCCCeecChHHHHHHHHHhe
Confidence            899999999999999874   8999999999999999998866433211    0   00111223345678888888888


Q ss_pred             CcEEE
Q psy2408         232 FELIK  236 (298)
Q Consensus       232 f~~~~  236 (298)
                      |....
T Consensus       175 ~~~~~  179 (475)
T PLN02336        175 TRDED  179 (475)
T ss_pred             eccCC
Confidence            87653

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.73  E-value=3.1e-16  Score=123.42  Aligned_cols=127  Identities=20%  Similarity=0.273  Sum_probs=99.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      ++.+|||+|||+|..+..++... +++|+++|+|+.+++.+++.+...+++ +++++++|+.+++ ..++||+|++..  
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-~~~~fD~I~s~~--  117 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-HEEQFDVITSRA--  117 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-ccCCccEEEehh--
Confidence            47899999999999999988753 568999999999999999999888874 5999999998874 357999999865  


Q ss_pred             cccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHH---HHhCCCcEEEEEeCCC
Q psy2408         167 FHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDL---LNKSGFELIKIDDITS  242 (298)
Q Consensus       167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~Gf~~~~~~~~~~  242 (298)
                        +.+. .+++.+.++|+|||.+++....    .                   ...++..+   +.-.||+.++...+..
T Consensus       118 --~~~~~~~~~~~~~~LkpgG~lvi~~~~----~-------------------~~~~~~~~~e~~~~~~~~~~~~~~~~~  172 (181)
T TIGR00138       118 --LASLNVLLELTLNLLKVGGYFLAYKGK----K-------------------YLDEIEEAKRKCQVLGVEPLEVPPLTG  172 (181)
T ss_pred             --hhCHHHHHHHHHHhcCCCCEEEEEcCC----C-------------------cHHHHHHHHHhhhhcCceEeeccccCC
Confidence              3345 7888889999999999986321    1                   11233333   4448999988876654


Q ss_pred             C
Q psy2408         243 H  243 (298)
Q Consensus       243 ~  243 (298)
                      .
T Consensus       173 ~  173 (181)
T TIGR00138       173 P  173 (181)
T ss_pred             C
Confidence            4

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.72  E-value=2.1e-16  Score=127.43  Aligned_cols=114  Identities=20%  Similarity=0.222  Sum_probs=96.2

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ..+...+++.+.+.++.+|||+|||+|..+..+++..  +++|+++|+++.+++.+++++...++..+++++.+|+.+..
T Consensus        58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~  137 (205)
T PRK13944         58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL  137 (205)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC
Confidence            3456677788888889999999999999999998864  46999999999999999999988887667999999998754


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ....+||+|++..++.++++     ++.++|+|||++++..
T Consensus       138 ~~~~~fD~Ii~~~~~~~~~~-----~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        138 EKHAPFDAIIVTAAASTIPS-----ALVRQLKDGGVLVIPV  173 (205)
T ss_pred             ccCCCccEEEEccCcchhhH-----HHHHhcCcCcEEEEEE
Confidence            34578999999988876653     6789999999998853

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.71  E-value=2.3e-16  Score=126.29  Aligned_cols=148  Identities=20%  Similarity=0.268  Sum_probs=106.2

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-C-CCCCCC
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-L-PFDNDS  156 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~  156 (298)
                      .+.+.+  +++.+|||+|||+|.++..+++..+..++|+|+|+++++.++..        +++++++|+.+ + ++++++
T Consensus         6 ~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~s   75 (194)
T TIGR02081         6 SILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKS   75 (194)
T ss_pred             HHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCC
Confidence            344444  46789999999999999998876677899999999999988642        36788888865 4 366789


Q ss_pred             eeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHH--------------HhhcccCCCCcc
Q psy2408         157 FDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYV--------------KKNIHSNFILVE  221 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~  221 (298)
                      ||+|+++.+++|++++ .+++++.|++++   +++..++... ..  .....+.              ....+..+++.+
T Consensus        76 fD~Vi~~~~l~~~~d~~~~l~e~~r~~~~---~ii~~p~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  149 (194)
T TIGR02081        76 FDYVILSQTLQATRNPEEILDEMLRVGRH---AIVSFPNFGY-WR--VRWSILTKGRMPVTGELPYDWYNTPNIHFCTIA  149 (194)
T ss_pred             cCEEEEhhHhHcCcCHHHHHHHHHHhCCe---EEEEcCChhH-HH--HHHHHHhCCccccCCCCCccccCCCCcccCcHH
Confidence            9999999999999999 999999887653   4443322110 00  0000000              001123577899


Q ss_pred             hHHHHHHhCCCcEEEEEeCCC
Q psy2408         222 HYPDLLNKSGFELIKIDDITS  242 (298)
Q Consensus       222 ~~~~~l~~~Gf~~~~~~~~~~  242 (298)
                      ++.++++++||++++...+..
T Consensus       150 ~~~~ll~~~Gf~v~~~~~~~~  170 (194)
T TIGR02081       150 DFEDLCGELNLRILDRAAFDV  170 (194)
T ss_pred             HHHHHHHHCCCEEEEEEEecc
Confidence            999999999999998776643

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.71  E-value=3.3e-16  Score=125.73  Aligned_cols=113  Identities=18%  Similarity=0.287  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      +.......++..+  .++.+|||+|||+|..+..+++. .+.+++|+|+|+.+++.|+++.      .++.+.++|+.+ 
T Consensus        29 ~~~~~~~~~l~~~--~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-   99 (204)
T TIGR03587        29 AKLAMFARALNRL--PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-   99 (204)
T ss_pred             HHHHHHHHHHHhc--CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-
Confidence            3334444444444  46779999999999999999886 3689999999999999998764      246788999888 


Q ss_pred             CCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPL  195 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~  195 (298)
                      ++++++||+|++..+++|+++.   .+++++.|++  ++.+++.++..
T Consensus       100 ~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~  145 (204)
T TIGR03587       100 PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN  145 (204)
T ss_pred             CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence            7788999999999999999743   8999999987  56888887653

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.71  E-value=1.5e-16  Score=132.82  Aligned_cols=127  Identities=20%  Similarity=0.233  Sum_probs=95.9

Q ss_pred             CCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCH----HHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHH---
Q psy2408          66 KDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGL----SGIRLAKAK------GCRVDGITISKFQQESAMKTAK---  132 (298)
Q Consensus        66 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~----~~~~l~~~~------~~~v~~vD~s~~~l~~a~~~~~---  132 (298)
                      ...+..-...+...++......++.+|+|+|||+|.    +++.+++..      +.+|+|+|+|+.|++.|++..-   
T Consensus        77 ~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~  156 (264)
T smart00138       77 SKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPER  156 (264)
T ss_pred             cHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHH
Confidence            334444444445555554444566899999999996    455555532      3689999999999999998531   


Q ss_pred             -hcC----------------------CCCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhcccCCc
Q psy2408         133 -AEG----------------------LLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGS  186 (298)
Q Consensus       133 -~~~----------------------~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG  186 (298)
                       ..+                      +..++.|.+.|+.+.+++.++||+|+|..+++|++++   .++++++++|+|||
T Consensus       157 ~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG  236 (264)
T smart00138      157 ELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGG  236 (264)
T ss_pred             HHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCe
Confidence             011                      1246899999999987677899999999999999866   89999999999999


Q ss_pred             EEEEEe
Q psy2408         187 ILTLTD  192 (298)
Q Consensus       187 ~l~i~~  192 (298)
                      +|++..
T Consensus       237 ~L~lg~  242 (264)
T smart00138      237 YLFLGH  242 (264)
T ss_pred             EEEEEC
Confidence            999863

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.71  E-value=9.6e-16  Score=122.01  Aligned_cols=141  Identities=18%  Similarity=0.175  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ...+...++..+.+.++.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.+++++...++. +++++++|+.. +
T Consensus        16 ~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~   93 (187)
T PRK08287         16 KEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-E   93 (187)
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-h
Confidence            34555666777777888999999999999999998864 579999999999999999998887764 68999998753 3


Q ss_pred             CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhC
Q psy2408         152 FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKS  230 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  230 (298)
                      + .++||+|++.....   .. .+++.+.++|+|||++++.....                      .+..++...+++.
T Consensus        94 ~-~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~----------------------~~~~~~~~~l~~~  147 (187)
T PRK08287         94 L-PGKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFILL----------------------ENLHSALAHLEKC  147 (187)
T ss_pred             c-CcCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEecH----------------------hhHHHHHHHHHHC
Confidence            3 36899999876543   34 78899999999999998864331                      1124667889999


Q ss_pred             CCcEEEEEeCC
Q psy2408         231 GFELIKIDDIT  241 (298)
Q Consensus       231 Gf~~~~~~~~~  241 (298)
                      ||..++...+.
T Consensus       148 g~~~~~~~~~~  158 (187)
T PRK08287        148 GVSELDCVQLQ  158 (187)
T ss_pred             CCCcceEEEEE
Confidence            99877655443

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.70  E-value=1.7e-15  Score=122.58  Aligned_cols=145  Identities=18%  Similarity=0.212  Sum_probs=107.9

Q ss_pred             HHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC--------------CCceEEEECC
Q psy2408          81 INKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL--------------LDKVNFLHGD  146 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--------------~~~i~~~~~d  146 (298)
                      +..+.+.++.+|||+|||.|..+..|++ .|..|+|||+|+..++.+...   .++              ..++++.++|
T Consensus        30 ~~~~~~~~~~rvL~~gCG~G~da~~LA~-~G~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~~D  105 (218)
T PRK13255         30 WPALALPAGSRVLVPLCGKSLDMLWLAE-QGHEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYCGD  105 (218)
T ss_pred             HHhhCCCCCCeEEEeCCCChHhHHHHHh-CCCeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEECc
Confidence            3334445677999999999999999998 699999999999999987432   222              2468899999


Q ss_pred             CCCCCCC-CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcch
Q psy2408         147 ALNLPFD-NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEH  222 (298)
Q Consensus       147 ~~~~~~~-~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (298)
                      +.+++.. .+.||+|+-..+++|++..   .+++.+.++|+|||++++..........           ...+...+.++
T Consensus       106 ~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~-----------~gPp~~~~~~e  174 (218)
T PRK13255        106 FFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL-----------AGPPFSVSDEE  174 (218)
T ss_pred             ccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC-----------CCCCCCCCHHH
Confidence            9988532 2689999999999999866   9999999999999976654443321110           11234678889


Q ss_pred             HHHHHHhCCCcEEEEEeCC
Q psy2408         223 YPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       223 ~~~~l~~~Gf~~~~~~~~~  241 (298)
                      +.+++. .+|.+.......
T Consensus       175 l~~~~~-~~~~i~~~~~~~  192 (218)
T PRK13255        175 VEALYA-GCFEIELLERQD  192 (218)
T ss_pred             HHHHhc-CCceEEEeeecc
Confidence            998885 337777766544

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.70  E-value=2.7e-16  Score=121.61  Aligned_cols=130  Identities=23%  Similarity=0.309  Sum_probs=99.9

Q ss_pred             EEEeCCHHHHHHHHHHHHhcC--CCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEE
Q psy2408         115 DGITISKFQQESAMKTAKAEG--LLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       115 ~~vD~s~~~l~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~  191 (298)
                      +|+|+|++|++.|+++....+  ...+++++++|+.++|+++++||+|++..++++++++ .++++++|+|||||.+++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~   80 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL   80 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            589999999999987765322  2346999999999999988999999999999999999 9999999999999999999


Q ss_pred             eCCCCCCCCChhHHHHHH---------------Hh-----hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcc
Q psy2408         192 DLPLLSVSKNDNKFKEYV---------------KK-----NIHSNFILVEHYPDLLNKSGFELIKIDDITSHVM  245 (298)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~---------------~~-----~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~  245 (298)
                      ++....... ......+.               ..     .....+.+.+++.++|+++||+.+....+..+..
T Consensus        81 d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~  153 (160)
T PLN02232         81 DFNKSNQSV-TTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFM  153 (160)
T ss_pred             ECCCCChHH-HHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence            887543211 00000000               00     0113567899999999999999888877766543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.69  E-value=5.8e-18  Score=131.95  Aligned_cols=190  Identities=23%  Similarity=0.291  Sum_probs=137.3

Q ss_pred             ccccCCCCc-hhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCH
Q psy2408          23 IKENKGNKG-KKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGL  101 (298)
Q Consensus        23 ~~~~~~~~~-~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~  101 (298)
                      ..-++..+. ...+...||+- ++.|+..+-+.+.+.              ...+.+.++......+-.++||+|||||.
T Consensus        74 g~~e~p~~pP~aYVe~LFD~~-Ae~Fd~~LVdkL~Y~--------------vP~~l~emI~~~~~g~F~~~lDLGCGTGL  138 (287)
T COG4976          74 GRGETPEKPPSAYVETLFDQY-AERFDHILVDKLGYS--------------VPELLAEMIGKADLGPFRRMLDLGCGTGL  138 (287)
T ss_pred             cCCCCCCCCchHHHHHHHHHH-HHHHHHHHHHHhcCc--------------cHHHHHHHHHhccCCccceeeecccCcCc
Confidence            333444444 48899999998 888887765443321              23456777788877777899999999999


Q ss_pred             HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCCCeeEEEecccccccChH-HHHHHH
Q psy2408         102 SGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDNDSFDGGWFFESIFHMNHS-AALNEA  178 (298)
Q Consensus       102 ~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~-~~l~~~  178 (298)
                      .+..+-. .-.+++|||+|.+|++.|.++    ++.+  ...++++..+  ....+.||+|++..|+.++.+. .++.-+
T Consensus       139 ~G~~lR~-~a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~a  211 (287)
T COG4976         139 TGEALRD-MADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGA  211 (287)
T ss_pred             ccHhHHH-HHhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHH
Confidence            9988877 456899999999999999876    2221  2344444322  1346889999999999999999 999999


Q ss_pred             hhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCC
Q psy2408         179 RRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       179 ~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                      ...|+|||.+.++.-.......       +.-.+..+.-++...+++.++..||.++.+++.+
T Consensus       212 a~~L~~gGlfaFSvE~l~~~~~-------f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt  267 (287)
T COG4976         212 AGLLAPGGLFAFSVETLPDDGG-------FVLGPSQRYAHSESYVRALLAASGLEVIAIEDTT  267 (287)
T ss_pred             HHhcCCCceEEEEecccCCCCC-------eecchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence            9999999999998655433221       0111112233456678899999999999987643

>PRK04266 fibrillarin; Provisional

Probab=99.69  E-value=1.6e-15  Score=123.25  Aligned_cols=142  Identities=17%  Similarity=0.184  Sum_probs=101.3

Q ss_pred             HhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC----CCCCCC
Q psy2408          82 NKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL----PFDNDS  156 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~  156 (298)
                      +.+.+.++.+|||+|||+|.++..+++.. ..+|+++|+++.|++.+.+.+...   .++.++.+|+...    ++ .++
T Consensus        66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l-~~~  141 (226)
T PRK04266         66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV-VEK  141 (226)
T ss_pred             hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc-ccc
Confidence            35788899999999999999999999865 368999999999999887776543   4688999998752    22 256


Q ss_pred             eeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcE
Q psy2408         157 FDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFEL  234 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  234 (298)
                      ||+|++...   .++.  .+++++.++|||||++++......-... ... ...           .++..+.++++||++
T Consensus       142 ~D~i~~d~~---~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~-~~~-~~~-----------~~~~~~~l~~aGF~~  205 (226)
T PRK04266        142 VDVIYQDVA---QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVT-KDP-KEI-----------FKEEIRKLEEGGFEI  205 (226)
T ss_pred             CCEEEECCC---ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCc-CCH-HHH-----------HHHHHHHHHHcCCeE
Confidence            999985321   1222  5689999999999999995322111110 000 000           124458999999999


Q ss_pred             EEEEeCCCC
Q psy2408         235 IKIDDITSH  243 (298)
Q Consensus       235 ~~~~~~~~~  243 (298)
                      ++..++...
T Consensus       206 i~~~~l~p~  214 (226)
T PRK04266        206 LEVVDLEPY  214 (226)
T ss_pred             EEEEcCCCC
Confidence            998876543

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.69  E-value=1.4e-15  Score=112.79  Aligned_cols=114  Identities=21%  Similarity=0.191  Sum_probs=93.0

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-CC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-PF  152 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~~  152 (298)
                      .+...+++.+.+.++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.+++.+...++. ++.++..|+... +.
T Consensus         6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~   84 (124)
T TIGR02469         6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALED   84 (124)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChh
Confidence            445556777777778899999999999999999874 579999999999999999998877764 588998987652 32


Q ss_pred             CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ..++||.|++.....   .. .+++++.+.|+|||++++..
T Consensus        85 ~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        85 SLPEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             hcCCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence            346899999866432   23 89999999999999999864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.69  E-value=2.4e-15  Score=118.85  Aligned_cols=129  Identities=22%  Similarity=0.269  Sum_probs=103.6

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      ..++.+|||+|||+|.++..++.. +.+++++|+|+.+++.+++++...+.  ++.++.+|+.+.+  .++||+|+++..
T Consensus        17 ~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~p   91 (179)
T TIGR00537        17 ELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNPP   91 (179)
T ss_pred             hcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECCC
Confidence            345679999999999999999984 44999999999999999999887664  5888999987653  358999999877


Q ss_pred             ccccCh---------------------H-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchH
Q psy2408         166 IFHMNH---------------------S-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY  223 (298)
Q Consensus       166 l~~~~~---------------------~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (298)
                      +++.++                     . .+++++.++|+|||.+++......                      ...++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------------------~~~~~  149 (179)
T TIGR00537        92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------------------GEPDT  149 (179)
T ss_pred             CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------------------ChHHH
Confidence            765542                     2 679999999999999998764421                      13577


Q ss_pred             HHHHHhCCCcEEEEEeCC
Q psy2408         224 PDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       224 ~~~l~~~Gf~~~~~~~~~  241 (298)
                      ...+++.||.........
T Consensus       150 ~~~l~~~gf~~~~~~~~~  167 (179)
T TIGR00537       150 FDKLDERGFRYEIVAERG  167 (179)
T ss_pred             HHHHHhCCCeEEEEEEee
Confidence            889999999988776544

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.68  E-value=2.5e-15  Score=120.59  Aligned_cols=136  Identities=19%  Similarity=0.346  Sum_probs=106.4

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-  150 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-  150 (298)
                      .++....+..+.+.++.+|||+|||+|.++..++...  +.+|+++|+++.+++.+++++...++..++.++.+|+.+. 
T Consensus        26 ~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l  105 (198)
T PRK00377         26 EEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL  105 (198)
T ss_pred             HHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH
Confidence            3445555678888899999999999999999988753  4689999999999999999999888667899999998764 


Q ss_pred             CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHh
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNK  229 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  229 (298)
                      +...++||+|++..   ...+. .+++.+.++|+|||++++.....       .               +..+....|++
T Consensus       106 ~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~-------~---------------~~~~~~~~l~~  160 (198)
T PRK00377        106 FTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAILL-------E---------------TVNNALSALEN  160 (198)
T ss_pred             hhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEeecH-------H---------------HHHHHHHHHHH
Confidence            32246899999854   23455 89999999999999998743320       0               13466778888


Q ss_pred             CCCcE
Q psy2408         230 SGFEL  234 (298)
Q Consensus       230 ~Gf~~  234 (298)
                      .||..
T Consensus       161 ~g~~~  165 (198)
T PRK00377        161 IGFNL  165 (198)
T ss_pred             cCCCe
Confidence            99853

>PRK06922 hypothetical protein; Provisional

Probab=99.68  E-value=7.4e-16  Score=139.47  Aligned_cols=108  Identities=28%  Similarity=0.399  Sum_probs=91.7

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCCeeEEEec
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDSFDGGWFF  163 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~  163 (298)
                      .++.+|||+|||+|..+..+++. ++.+++|+|+|+.|++.|+++....+  .++.++++|+.+++  +++++||+|+++
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVsn  494 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVYS  494 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEEc
Confidence            46789999999999999888875 46899999999999999998876544  35788999998876  678899999999


Q ss_pred             ccccccC-------------hH-HHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         164 ESIFHMN-------------HS-AALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       164 ~~l~~~~-------------~~-~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      .+++++.             +. .+++++.++|||||++++.+....
T Consensus       495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~  541 (677)
T PRK06922        495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT  541 (677)
T ss_pred             hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence            9888652             33 999999999999999999886543

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.68  E-value=9.3e-18  Score=119.45  Aligned_cols=95  Identities=32%  Similarity=0.339  Sum_probs=64.5

Q ss_pred             EEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCCeeEEEeccccccc
Q psy2408          93 IDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDSFDGGWFFESIFHM  169 (298)
Q Consensus        93 LDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~  169 (298)
                      ||+|||+|.++..+.+. ...+++++|+|+.|++.+++++...... +......+..+..  .+.++||+|++..+++|+
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence            79999999999999987 3679999999999999999988876542 2344444433321  123699999999999999


Q ss_pred             ChH-HHHHHHhhcccCCcEE
Q psy2408         170 NHS-AALNEARRVLKSGSIL  188 (298)
Q Consensus       170 ~~~-~~l~~~~r~LkpgG~l  188 (298)
                      ++. .++++++++|+|||+|
T Consensus        80 ~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhHHHHHHHHHHHcCCCCCC
Confidence            888 9999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.67  E-value=1.7e-15  Score=130.84  Aligned_cols=139  Identities=25%  Similarity=0.241  Sum_probs=111.6

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+...+++...+.++.+|||+|||+|.++..++. .+.+++|+|+++.|+..++.++...++.+ +.+.++|+.+++++
T Consensus       168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~  245 (329)
T TIGR01177       168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLS  245 (329)
T ss_pred             HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcc
Confidence            34566677777788999999999999999888766 68899999999999999999999888865 88999999999887


Q ss_pred             CCCeeEEEeccccc-------c-cCh-H-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchH
Q psy2408         154 NDSFDGGWFFESIF-------H-MNH-S-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY  223 (298)
Q Consensus       154 ~~~fD~V~~~~~l~-------~-~~~-~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (298)
                      +++||+|++.-...       + ..+ . .+++++.++|+|||++++..+.                         ..++
T Consensus       246 ~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~-------------------------~~~~  300 (329)
T TIGR01177       246 SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT-------------------------RIDL  300 (329)
T ss_pred             cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC-------------------------CCCH
Confidence            78999999853211       1 112 2 8999999999999999886443                         1256


Q ss_pred             HHHHHhCCCcEEEEEeC
Q psy2408         224 PDLLNKSGFELIKIDDI  240 (298)
Q Consensus       224 ~~~l~~~Gf~~~~~~~~  240 (298)
                      ..+++++|| ++.....
T Consensus       301 ~~~~~~~g~-i~~~~~~  316 (329)
T TIGR01177       301 ESLAEDAFR-VVKRFEV  316 (329)
T ss_pred             HHHHhhcCc-chheeee
Confidence            678899999 7765543

This family is found exclusively in the Archaea.

>PRK14967 putative methyltransferase; Provisional

Probab=99.67  E-value=1.6e-14  Score=118.07  Aligned_cols=140  Identities=21%  Similarity=0.174  Sum_probs=103.4

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS  156 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  156 (298)
                      ...++..+.+.++.+|||+|||+|.++..++.....+++++|+|+.+++.+++++...++  ++.++++|+.+. +++++
T Consensus        25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~  101 (223)
T PRK14967         25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRP  101 (223)
T ss_pred             HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCC
Confidence            334455556678889999999999999999884224999999999999999999887765  488899998763 45678


Q ss_pred             eeEEEecccccccC---------------------hH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcc
Q psy2408         157 FDGGWFFESIFHMN---------------------HS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIH  214 (298)
Q Consensus       157 fD~V~~~~~l~~~~---------------------~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~  214 (298)
                      ||+|+++-......                     .. .+++++.++|+|||++++......                  
T Consensus       102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~------------------  163 (223)
T PRK14967        102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS------------------  163 (223)
T ss_pred             eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc------------------
Confidence            99999874322110                     02 578889999999999987543311                  


Q ss_pred             cCCCCcchHHHHHHhCCCcEEEEEeCC
Q psy2408         215 SNFILVEHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       215 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                          ...++...+++.||.+.......
T Consensus       164 ----~~~~~~~~l~~~g~~~~~~~~~~  186 (223)
T PRK14967        164 ----GVERTLTRLSEAGLDAEVVASQW  186 (223)
T ss_pred             ----CHHHHHHHHHHCCCCeEEEEeec
Confidence                12356778889999866654433

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.67  E-value=1.9e-15  Score=122.33  Aligned_cols=114  Identities=24%  Similarity=0.267  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      ...+...+++.+.+.++.+|||||||+|..+..+++..+  .+|+++|+++.+++.+++++...++ .+++++++|+...
T Consensus        61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~  139 (212)
T PRK13942         61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLG  139 (212)
T ss_pred             cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccC
Confidence            456677788888889999999999999999999988643  6999999999999999999998876 4799999998875


Q ss_pred             CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ..+.++||+|++.....+++     ..+.+.|+|||++++..
T Consensus       140 ~~~~~~fD~I~~~~~~~~~~-----~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        140 YEENAPYDRIYVTAAGPDIP-----KPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CCcCCCcCEEEECCCcccch-----HHHHHhhCCCcEEEEEE
Confidence            54568899999877665433     35667899999988853

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.66  E-value=3.5e-15  Score=125.72  Aligned_cols=110  Identities=27%  Similarity=0.381  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK----GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL  148 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~  148 (298)
                      .+.+...+.+.+. .++.+|||+|||+|.++..+++..    +..++|+|+|+.+++.|+++.      .++.+.++|+.
T Consensus        71 ~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~  143 (272)
T PRK11088         71 RDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSH  143 (272)
T ss_pred             HHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecc
Confidence            3444444444443 355789999999999999998753    247999999999999997653      35889999999


Q ss_pred             CCCCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCC
Q psy2408         149 NLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPL  195 (298)
Q Consensus       149 ~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~  195 (298)
                      ++|+++++||+|++..+      +..++++.|+|+|||++++..+..
T Consensus       144 ~lp~~~~sfD~I~~~~~------~~~~~e~~rvLkpgG~li~~~p~~  184 (272)
T PRK11088        144 RLPFADQSLDAIIRIYA------PCKAEELARVVKPGGIVITVTPGP  184 (272)
T ss_pred             cCCCcCCceeEEEEecC------CCCHHHHHhhccCCCEEEEEeCCC
Confidence            99998999999997653      335688999999999999987653

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.66  E-value=8.3e-16  Score=118.80  Aligned_cols=135  Identities=19%  Similarity=0.276  Sum_probs=97.2

Q ss_pred             hCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEe
Q psy2408          83 KTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWF  162 (298)
Q Consensus        83 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~  162 (298)
                      .++-.+-.++||+|||.|.++..|+.+. .+++++|+|+..++.|+++....   +++++++.|+... .|.++||+|++
T Consensus        38 aLp~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~-~P~~~FDLIV~  112 (201)
T PF05401_consen   38 ALPRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGL---PHVEWIQADVPEF-WPEGRFDLIVL  112 (201)
T ss_dssp             HHTTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEEE
T ss_pred             hcCccccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCC-CCCCCeeEEEE
Confidence            3544556799999999999999999964 58999999999999999998753   4799999999885 46799999999


Q ss_pred             cccccccChH----HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEE
Q psy2408         163 FESIFHMNHS----AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIK  236 (298)
Q Consensus       163 ~~~l~~~~~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  236 (298)
                      +.+++++.+.    .++..+...|+|||.|++....       ...    ...  ..+....+.+.++|++. |..++
T Consensus       113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r-------d~~----c~~--wgh~~ga~tv~~~~~~~-~~~~~  176 (201)
T PF05401_consen  113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR-------DAN----CRR--WGHAAGAETVLEMLQEH-LTEVE  176 (201)
T ss_dssp             ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE--------HHH----HHH--TT-S--HHHHHHHHHHH-SEEEE
T ss_pred             ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec-------CCc----ccc--cCcccchHHHHHHHHHH-hhhee
Confidence            9999999753    7899999999999999998654       111    111  23445677888888775 44343

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.65  E-value=4.3e-15  Score=120.82  Aligned_cols=112  Identities=22%  Similarity=0.237  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ......+++.+.+.++.+|||+|||+|..+..+++..+  .+|+++|+++.+++.|++++...++ ++++++++|+....
T Consensus        63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~  141 (215)
T TIGR00080        63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGW  141 (215)
T ss_pred             HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCC
Confidence            45567777888888999999999999999999998643  4699999999999999999999887 57999999997754


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEE
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLT  191 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~  191 (298)
                      ...++||+|++.....++     ...+.+.|+|||++++.
T Consensus       142 ~~~~~fD~Ii~~~~~~~~-----~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       142 EPLAPYDRIYVTAAGPKI-----PEALIDQLKEGGILVMP  176 (215)
T ss_pred             cccCCCCEEEEcCCcccc-----cHHHHHhcCcCcEEEEE
Confidence            345689999987665443     34678899999999885

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.65  E-value=1.8e-15  Score=121.60  Aligned_cols=125  Identities=25%  Similarity=0.259  Sum_probs=98.8

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC-CCCC--CCCCCeeEEEec
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA-LNLP--FDNDSFDGGWFF  163 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~fD~V~~~  163 (298)
                      ++.+|||+|||+|..+..+++.. +.+|+|+|+|+.+++.+++++...++ .++.++++|+ ..++  +++++||+|++.
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            56799999999999999998864 56899999999999999999988776 5699999999 6655  667899999987


Q ss_pred             ccccccC---------hHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcE
Q psy2408         164 ESIFHMN---------HSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFEL  234 (298)
Q Consensus       164 ~~l~~~~---------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  234 (298)
                      ....+..         ...+++++.++|+|||.+++....       ...               ..++.+.+++.|+.+
T Consensus       119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~-------~~~---------------~~~~~~~~~~~g~~~  176 (202)
T PRK00121        119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW-------EGY---------------AEYMLEVLSAEGGFL  176 (202)
T ss_pred             CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC-------HHH---------------HHHHHHHHHhCcccc
Confidence            6543222         127899999999999999997543       111               125667788888865


Q ss_pred             E
Q psy2408         235 I  235 (298)
Q Consensus       235 ~  235 (298)
                      .
T Consensus       177 ~  177 (202)
T PRK00121        177 V  177 (202)
T ss_pred             c
Confidence            5

>PLN03075 nicotianamine synthase; Provisional

Probab=99.65  E-value=2.9e-15  Score=124.70  Aligned_cols=105  Identities=14%  Similarity=0.190  Sum_probs=87.4

Q ss_pred             CCCCeEEEeCCCCCHHHHH-HHH-h-cCCeEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEECCCCCCCCCCCCeeEEEe
Q psy2408          87 TKGQRFIDIGCGFGLSGIR-LAK-A-KGCRVDGITISKFQQESAMKTAKA-EGLLDKVNFLHGDALNLPFDNDSFDGGWF  162 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~-l~~-~-~~~~v~~vD~s~~~l~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~fD~V~~  162 (298)
                      .++.+|+|||||.|.++.. ++. . .+.+++++|+++++++.|++.+.. .++.++++|..+|+.+.+...+.||+|++
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~  201 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL  201 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence            4778999999998855443 333 2 367999999999999999999964 78888899999999886423478999999


Q ss_pred             ccccccc--ChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         163 FESIFHM--NHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       163 ~~~l~~~--~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      . ++.++  +++ ++++++.+.|+|||.+++..
T Consensus       202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            9 88887  456 99999999999999999975

>PRK14968 putative methyltransferase; Provisional

Probab=99.65  E-value=9.8e-15  Score=116.40  Aligned_cols=136  Identities=28%  Similarity=0.419  Sum_probs=104.2

Q ss_pred             HHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEECCCCCCCCCCCCee
Q psy2408          80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK-VNFLHGDALNLPFDNDSFD  158 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~fD  158 (298)
                      +++.+...++.+|||+|||+|.++..++.. +.+++++|+|+.+++.+++++...++.++ +.+++.|+.+ +++.++||
T Consensus        15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d   92 (188)
T PRK14968         15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFD   92 (188)
T ss_pred             HHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCce
Confidence            333443467889999999999999999985 88999999999999999999887776433 8889999876 34456899


Q ss_pred             EEEecccccccC---------------------hH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccC
Q psy2408         159 GGWFFESIFHMN---------------------HS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSN  216 (298)
Q Consensus       159 ~V~~~~~l~~~~---------------------~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (298)
                      +|+++..+....                     .. .+++++.++|+|||.+++.....                     
T Consensus        93 ~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------------  151 (188)
T PRK14968         93 VILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------------  151 (188)
T ss_pred             EEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc---------------------
Confidence            999875543211                     12 68999999999999988864321                     


Q ss_pred             CCCcchHHHHHHhCCCcEEEEEe
Q psy2408         217 FILVEHYPDLLNKSGFELIKIDD  239 (298)
Q Consensus       217 ~~~~~~~~~~l~~~Gf~~~~~~~  239 (298)
                       ...+.+..+++++||++.....
T Consensus       152 -~~~~~l~~~~~~~g~~~~~~~~  173 (188)
T PRK14968        152 -TGEDEVLEYLEKLGFEAEVVAE  173 (188)
T ss_pred             -CCHHHHHHHHHHCCCeeeeeee
Confidence             1234677899999998776544

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.64  E-value=1.3e-14  Score=113.45  Aligned_cols=119  Identities=27%  Similarity=0.363  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC
Q psy2408          69 FAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA  147 (298)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~  147 (298)
                      +..+..-+.+.+...    ++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++++...++.. ++++..|.
T Consensus        16 ~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~   90 (170)
T PF05175_consen   16 LDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDL   90 (170)
T ss_dssp             HHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESST
T ss_pred             CCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccc
Confidence            334444444444433    67799999999999999999964 3479999999999999999999999876 99999999


Q ss_pred             CCCCCCCCCeeEEEecccccccCh----H--HHHHHHhhcccCCcEEEEEeC
Q psy2408         148 LNLPFDNDSFDGGWFFESIFHMNH----S--AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       148 ~~~~~~~~~fD~V~~~~~l~~~~~----~--~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .+. .++++||+|+++-.++.-.+    .  .+++.+.+.|+|||.+++...
T Consensus        91 ~~~-~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~  141 (170)
T PF05175_consen   91 FEA-LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN  141 (170)
T ss_dssp             TTT-CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccc-ccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence            774 34689999999987766655    2  899999999999999977543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.64  E-value=5.4e-15  Score=122.90  Aligned_cols=120  Identities=25%  Similarity=0.298  Sum_probs=91.8

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      .++.+|||+|||+|.++..+++ .++ +|+|+|+|+.+++.|++++...++..++.+..+|        .+||+|+++..
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vvani~  188 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIVANIL  188 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEEEcCc
Confidence            5788999999999999887776 444 6999999999999999999887764444433322        27999998643


Q ss_pred             ccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeC
Q psy2408         166 IFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       166 l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  240 (298)
                      .   ... .+++++.++|+|||+++++.....                      ..+++...+++.||.++.....
T Consensus       189 ~---~~~~~l~~~~~~~LkpgG~lilsgi~~~----------------------~~~~v~~~l~~~Gf~~~~~~~~  239 (250)
T PRK00517        189 A---NPLLELAPDLARLLKPGGRLILSGILEE----------------------QADEVLEAYEEAGFTLDEVLER  239 (250)
T ss_pred             H---HHHHHHHHHHHHhcCCCcEEEEEECcHh----------------------hHHHHHHHHHHCCCEEEEEEEe
Confidence            2   112 889999999999999999865411                      1346778899999998876553

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.63  E-value=1.7e-15  Score=119.07  Aligned_cols=187  Identities=18%  Similarity=0.177  Sum_probs=125.2

Q ss_pred             hhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCC------CCCeEEEeCCCCCHHHHH
Q psy2408          32 KKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSIT------KGQRFIDIGCGFGLSGIR  105 (298)
Q Consensus        32 ~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~vLDiGcG~G~~~~~  105 (298)
                      .+...+||+.. .+.-+.++|+.-+            +...--.-.+.++..+...      ...++||+|+|-|+.+..
T Consensus         6 y~~a~~YW~~v-~atvdGMLGG~~~------------is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~   72 (218)
T PF05891_consen    6 YEKAKEYWENV-PATVDGMLGGFGH------------ISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKG   72 (218)
T ss_dssp             HHHHHHHHHTS--SSHHHHTTT-GG------------GHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHH
T ss_pred             HHHHHHHHcCC-CCCccccccCCCC------------CChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHH
Confidence            34567899988 8888888887532            2233334455566665443      346999999999999988


Q ss_pred             HHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhcc
Q psy2408         106 LAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVL  182 (298)
Q Consensus       106 l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~L  182 (298)
                      +....-.+|..||+.+.+++.|++.+.... ....++.+..++++..+.++||+|++.+++.|+.|.   .+|+++...|
T Consensus        73 lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L  151 (218)
T PF05891_consen   73 LLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQAL  151 (218)
T ss_dssp             TCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHE
T ss_pred             HHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhC
Confidence            866455699999999999999998765421 234678899999885456799999999999999998   9999999999


Q ss_pred             cCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEe
Q psy2408         183 KSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDD  239 (298)
Q Consensus       183 kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  239 (298)
                      +|+|.+++-+-.......   .    +...-..-..+.+.+++++++||++++....
T Consensus       152 ~~~G~IvvKEN~~~~~~~---~----~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~  201 (218)
T PF05891_consen  152 KPNGVIVVKENVSSSGFD---E----FDEEDSSVTRSDEHFRELFKQAGLRLVKEEK  201 (218)
T ss_dssp             EEEEEEEEEEEEESSSEE---E----EETTTTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred             cCCcEEEEEecCCCCCCc---c----cCCccCeeecCHHHHHHHHHHcCCEEEEecc
Confidence            999999997655332110   0    0011112234567899999999999987553

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR03438 probable methyltransferase

Probab=99.63  E-value=2.4e-15  Score=128.21  Aligned_cols=148  Identities=17%  Similarity=0.118  Sum_probs=103.7

Q ss_pred             HhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCe
Q psy2408          36 ATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCR  113 (298)
Q Consensus        36 ~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~  113 (298)
                      +=+||..+...|+.+...+.   |+....+.    .........+...+  +++.+|||+|||+|..+..+++..  +.+
T Consensus        20 ~~~yd~~G~~lf~~i~~~pe---Yy~tr~E~----~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~   90 (301)
T TIGR03438        20 KYFYDARGSELFEQICELPE---YYPTRTEA----AILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPAR   90 (301)
T ss_pred             hhcccchHHHHHHHHHCCCc---cccHHHHH----HHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCe
Confidence            44788775677877754332   33321111    22334444455554  466799999999999999999874  579


Q ss_pred             EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-CCCCCC----CeeEEEecccccccChH---HHHHHHhhcccCC
Q psy2408         114 VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-LPFDND----SFDGGWFFESIFHMNHS---AALNEARRVLKSG  185 (298)
Q Consensus       114 v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~----~fD~V~~~~~l~~~~~~---~~l~~~~r~Lkpg  185 (298)
                      |+++|+|++|++.+++++.......++.++++|+.+ ++++..    ...++++..++.+++..   .+|++++++|+||
T Consensus        91 ~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pg  170 (301)
T TIGR03438        91 YVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPG  170 (301)
T ss_pred             EEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCC
Confidence            999999999999999987754322357788999976 343322    23344555678887764   8999999999999


Q ss_pred             cEEEEEe
Q psy2408         186 SILTLTD  192 (298)
Q Consensus       186 G~l~i~~  192 (298)
                      |.+++..
T Consensus       171 G~~lig~  177 (301)
T TIGR03438       171 GGLLIGV  177 (301)
T ss_pred             CEEEEec
Confidence            9998854

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PTZ00146 fibrillarin; Provisional

Probab=99.63  E-value=2e-14  Score=119.24  Aligned_cols=150  Identities=15%  Similarity=0.082  Sum_probs=102.4

Q ss_pred             HHHHHHHH---HhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC
Q psy2408          74 DKLSRIMI---NKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL  148 (298)
Q Consensus        74 ~~~~~~l~---~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~  148 (298)
                      ..+...++   +.+.+.++.+|||+|||+|.++..++...  ...|++||+|+.+++.....+...   .|+.++..|+.
T Consensus       115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~  191 (293)
T PTZ00146        115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDAR  191 (293)
T ss_pred             cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCcc
Confidence            45555553   44567899999999999999999999975  358999999998765555544332   46889999986


Q ss_pred             CC---CCCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchH
Q psy2408         149 NL---PFDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY  223 (298)
Q Consensus       149 ~~---~~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (298)
                      ..   ..+.++||+|++...   .++.  .++.++.++|||||.|+|..........  ......         +. +++
T Consensus       192 ~p~~y~~~~~~vDvV~~Dva---~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g--~~pe~~---------f~-~ev  256 (293)
T PTZ00146        192 YPQKYRMLVPMVDVIFADVA---QPDQARIVALNAQYFLKNGGHFIISIKANCIDST--AKPEVV---------FA-SEV  256 (293)
T ss_pred             ChhhhhcccCCCCEEEEeCC---CcchHHHHHHHHHHhccCCCEEEEEEeccccccC--CCHHHH---------HH-HHH
Confidence            42   223468999988663   2444  6667999999999999995322111111  000000         11 234


Q ss_pred             HHHHHhCCCcEEEEEeCCC
Q psy2408         224 PDLLNKSGFELIKIDDITS  242 (298)
Q Consensus       224 ~~~l~~~Gf~~~~~~~~~~  242 (298)
                       +.|+++||++++..++..
T Consensus       257 -~~L~~~GF~~~e~v~L~P  274 (293)
T PTZ00146        257 -QKLKKEGLKPKEQLTLEP  274 (293)
T ss_pred             -HHHHHcCCceEEEEecCC
Confidence             789999999988877643

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.62  E-value=1.2e-14  Score=123.26  Aligned_cols=136  Identities=21%  Similarity=0.202  Sum_probs=100.2

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      ++...+++... .++.+|||+|||+|.++..+++....+|+++|+|+.+++.|++++...++..++.+...+...  ...
T Consensus       147 ~l~l~~l~~~~-~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~  223 (288)
T TIGR00406       147 SLCLEWLEDLD-LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIE  223 (288)
T ss_pred             HHHHHHHHhhc-CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccC
Confidence            33333444443 467899999999999998888743358999999999999999999988887777777776433  235


Q ss_pred             CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCc
Q psy2408         155 DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFE  233 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  233 (298)
                      ++||+|+++....   .. .++.++.++|+|||+++++.+...                      ..+++.+.+++. |.
T Consensus       224 ~~fDlVvan~~~~---~l~~ll~~~~~~LkpgG~li~sgi~~~----------------------~~~~v~~~~~~~-f~  277 (288)
T TIGR00406       224 GKADVIVANILAE---VIKELYPQFSRLVKPGGWLILSGILET----------------------QAQSVCDAYEQG-FT  277 (288)
T ss_pred             CCceEEEEecCHH---HHHHHHHHHHHHcCCCcEEEEEeCcHh----------------------HHHHHHHHHHcc-Cc
Confidence            7899999875432   23 889999999999999999765411                      123566667665 87


Q ss_pred             EEEEEe
Q psy2408         234 LIKIDD  239 (298)
Q Consensus       234 ~~~~~~  239 (298)
                      ++....
T Consensus       278 ~~~~~~  283 (288)
T TIGR00406       278 VVEIRQ  283 (288)
T ss_pred             eeeEec
Confidence            776543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>KOG2361|consensus

Probab=99.61  E-value=6.9e-16  Score=121.62  Aligned_cols=146  Identities=19%  Similarity=0.274  Sum_probs=110.1

Q ss_pred             eEEEeCCCCCHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC----CCCCCCeeEEEec
Q psy2408          91 RFIDIGCGFGLSGIRLAKAK---GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL----PFDNDSFDGGWFF  163 (298)
Q Consensus        91 ~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V~~~  163 (298)
                      +|||+|||.|.....+.+..   +..++++|.|+..++..+++.....  .++...+.|+...    +++.+++|.|++.
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I  151 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI  151 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence            89999999999999998863   3699999999999999988755332  3455555565432    5567999999999


Q ss_pred             ccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCC----Chh---HHHHHHHhhcccCCCCcchHHHHHHhCCCc
Q psy2408         164 ESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSK----NDN---KFKEYVKKNIHSNFILVEHYPDLLNKSGFE  233 (298)
Q Consensus       164 ~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  233 (298)
                      ++|..++..   .++.++.++|||||.|++-++...+-.-    ...   .............+++.+++..++.++||.
T Consensus       152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~  231 (264)
T KOG2361|consen  152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFE  231 (264)
T ss_pred             EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccc
Confidence            999999766   9999999999999999999988543100    000   000111223345789999999999999998


Q ss_pred             EEEEE
Q psy2408         234 LIKID  238 (298)
Q Consensus       234 ~~~~~  238 (298)
                      .++..
T Consensus       232 ~~~~~  236 (264)
T KOG2361|consen  232 EVQLE  236 (264)
T ss_pred             hhccc
Confidence            77654

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.61  E-value=2e-14  Score=124.62  Aligned_cols=117  Identities=19%  Similarity=0.262  Sum_probs=93.8

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCC--CceEEEECCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLL--DKVNFLHGDALNLP  151 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~i~~~~~d~~~~~  151 (298)
                      .-.+.+++.++...+.+|||+|||+|.++..+++.. ..+|+++|.|+.+++.++++++..+..  .+++++..|+... 
T Consensus       215 ~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-  293 (378)
T PRK15001        215 IGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-  293 (378)
T ss_pred             hHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-
Confidence            345557777765556799999999999999999864 679999999999999999998876643  3688999988653 


Q ss_pred             CCCCCeeEEEeccccccc---ChH---HHHHHHhhcccCCcEEEEEe
Q psy2408         152 FDNDSFDGGWFFESIFHM---NHS---AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~---~~~---~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ++.++||+|+++-.++..   .+.   .+++.+.++|+|||.+++..
T Consensus       294 ~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        294 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            344689999998666543   333   89999999999999999974

>KOG1541|consensus

Probab=99.60  E-value=9.5e-15  Score=113.49  Aligned_cols=117  Identities=24%  Similarity=0.336  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHhCCCCC--CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC
Q psy2408          71 QGSDKLSRIMINKTSITK--GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL  148 (298)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~  148 (298)
                      ..+.++....++.+.++.  +.-|||||||+|..+..+.. .|+.++|+|+|+.|++.|.++--+      -.++.+|+-
T Consensus        31 ~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~-~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG  103 (270)
T KOG1541|consen   31 LIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD-SGHQWIGVDISPSMLEQAVERELE------GDLILCDMG  103 (270)
T ss_pred             eehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc-CCceEEeecCCHHHHHHHHHhhhh------cCeeeeecC
Confidence            345667777777777665  67899999999999988887 689999999999999999974222      246777774


Q ss_pred             -CCCCCCCCeeEEEecccccccCh-------H-----HHHHHHhhcccCCcEEEEEeCC
Q psy2408         149 -NLPFDNDSFDGGWFFESIFHMNH-------S-----AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       149 -~~~~~~~~fD~V~~~~~l~~~~~-------~-----~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                       -+||+.++||.|++..+++++-+       |     .|+..++.+|++|++.++.-+.
T Consensus       104 ~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp  162 (270)
T KOG1541|consen  104 EGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP  162 (270)
T ss_pred             CCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence             56999999999999888766532       2     7788999999999999887554

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.59  E-value=1.3e-14  Score=115.97  Aligned_cols=106  Identities=27%  Similarity=0.294  Sum_probs=87.2

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---CCCCCeeEEEec
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---FDNDSFDGGWFF  163 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~~  163 (298)
                      ...+|||||||+|..+..+++.. +..++|+|+++.+++.|++++...++. +++++++|+.+++   ++++++|.|+++
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~   94 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN   94 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence            45599999999999999999863 679999999999999999999888875 7999999997652   455689999987


Q ss_pred             ccccccCh---------HHHHHHHhhcccCCcEEEEEeCC
Q psy2408         164 ESIFHMNH---------SAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       164 ~~l~~~~~---------~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ....+...         +.+++++.++|||||.|++....
T Consensus        95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~  134 (194)
T TIGR00091        95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN  134 (194)
T ss_pred             CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence            65433221         26899999999999999887533

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=4.4e-14  Score=110.83  Aligned_cols=114  Identities=21%  Similarity=0.205  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      ...+...+++.+.++++.+|||||||+|..+..+++ ...+|+.+|..++..+.|++++...|+. |+.++++|...--.
T Consensus        57 ~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~-l~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~  134 (209)
T COG2518          57 APHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLAR-LVGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWP  134 (209)
T ss_pred             CcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHH-HhCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCC
Confidence            345778889999999999999999999999999999 4559999999999999999999999985 49999999977422


Q ss_pred             CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +...||.|+...+...+|.     .+.+.|+|||++++-.-
T Consensus       135 ~~aPyD~I~Vtaaa~~vP~-----~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         135 EEAPYDRIIVTAAAPEVPE-----ALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCCcCEEEEeeccCCCCH-----HHHHhcccCCEEEEEEc
Confidence            4589999999998887777     57788999999998654

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.58  E-value=9.4e-14  Score=115.93  Aligned_cols=140  Identities=26%  Similarity=0.314  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ...+...+++.+. ..+.+|||+|||+|..+..++... +.+++|+|+|+.+++.++..+...++. ++.++++|+.+ +
T Consensus        73 ~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~  149 (251)
T TIGR03534        73 TEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE-P  149 (251)
T ss_pred             hHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc-c
Confidence            3455666666654 345699999999999999999864 579999999999999999999888774 69999999977 4


Q ss_pred             CCCCCeeEEEecccccc------cC--------------------hH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhH
Q psy2408         152 FDNDSFDGGWFFESIFH------MN--------------------HS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNK  204 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~------~~--------------------~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~  204 (298)
                      +++++||+|+++-....      +.                    .. .+++++.++|+|||.+++....          
T Consensus       150 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~----------  219 (251)
T TIGR03534       150 LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY----------  219 (251)
T ss_pred             CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc----------
Confidence            55689999998532211      11                    11 5688999999999999885211          


Q ss_pred             HHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEE
Q psy2408         205 FKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                                   ...+++.++++++||..+...
T Consensus       220 -------------~~~~~~~~~l~~~gf~~v~~~  240 (251)
T TIGR03534       220 -------------DQGEAVRALFEAAGFADVETR  240 (251)
T ss_pred             -------------cHHHHHHHHHHhCCCCceEEE
Confidence                         123467888999999876643

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=5.1e-14  Score=116.88  Aligned_cols=137  Identities=26%  Similarity=0.357  Sum_probs=103.1

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      .++-..++... .++.+|||+|||+|.+++..++ .|+ +++|+|+++..++.+++++..++++..+.....+....+ .
T Consensus       150 ~lcL~~Le~~~-~~g~~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~  226 (300)
T COG2264         150 SLCLEALEKLL-KKGKTVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-E  226 (300)
T ss_pred             HHHHHHHHHhh-cCCCEEEEecCChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-c
Confidence            34444444443 4889999999999999999988 676 699999999999999999999988653334444443333 2


Q ss_pred             CCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCC
Q psy2408         154 NDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG  231 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  231 (298)
                      .++||+|+++-    +.++  .+...+.+.++|||+++++.....                      ..+.+.+.++++|
T Consensus       227 ~~~~DvIVANI----LA~vl~~La~~~~~~lkpgg~lIlSGIl~~----------------------q~~~V~~a~~~~g  280 (300)
T COG2264         227 NGPFDVIVANI----LAEVLVELAPDIKRLLKPGGRLILSGILED----------------------QAESVAEAYEQAG  280 (300)
T ss_pred             cCcccEEEehh----hHHHHHHHHHHHHHHcCCCceEEEEeehHh----------------------HHHHHHHHHHhCC
Confidence            36999999865    2355  888999999999999999864311                      0246778888999


Q ss_pred             CcEEEEEeC
Q psy2408         232 FELIKIDDI  240 (298)
Q Consensus       232 f~~~~~~~~  240 (298)
                      |.++.....
T Consensus       281 f~v~~~~~~  289 (300)
T COG2264         281 FEVVEVLER  289 (300)
T ss_pred             CeEeEEEec
Confidence            999887654

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.58  E-value=1.7e-13  Score=115.74  Aligned_cols=104  Identities=23%  Similarity=0.247  Sum_probs=84.1

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      .++.+|||+|||+|.++..++... +.+++++|+|+.+++.|++++...++.+++.++++|+.+ +++.++||+|+++--
T Consensus       120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP  198 (284)
T TIGR03533       120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP  198 (284)
T ss_pred             CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence            345799999999999999999864 679999999999999999999998887789999999865 234568999998511


Q ss_pred             ------c-------cccC------------hH-HHHHHHhhcccCCcEEEEE
Q psy2408         166 ------I-------FHMN------------HS-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       166 ------l-------~~~~------------~~-~~l~~~~r~LkpgG~l~i~  191 (298)
                            +       .|-+            .. .+++++.++|+|||++++.
T Consensus       199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e  250 (284)
T TIGR03533       199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE  250 (284)
T ss_pred             CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                  1       1111            11 6788999999999998874

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.58  E-value=2.1e-13  Score=104.63  Aligned_cols=140  Identities=24%  Similarity=0.278  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      ..+++....+..+.+.++++++|||||+|..+..++.. +.++|+++|-++++++..++++.+.++ +|+.++.+++.+.
T Consensus        18 TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~   96 (187)
T COG2242          18 TKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEA   96 (187)
T ss_pred             cHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHh
Confidence            44677777889999999999999999999999999954 467999999999999999999999995 6899999999775


Q ss_pred             CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHh
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNK  229 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  229 (298)
                      -....++|.||....    ... .+++.+...|+|||++++......+                      .....+.+++
T Consensus        97 L~~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE~----------------------~~~a~~~~~~  150 (187)
T COG2242          97 LPDLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLET----------------------LAKALEALEQ  150 (187)
T ss_pred             hcCCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHHH----------------------HHHHHHHHHH
Confidence            111237999998776    233 8999999999999999997544211                      1234567888


Q ss_pred             CCC-cEEEEE
Q psy2408         230 SGF-ELIKID  238 (298)
Q Consensus       230 ~Gf-~~~~~~  238 (298)
                      .|+ +++.+.
T Consensus       151 ~g~~ei~~v~  160 (187)
T COG2242         151 LGGREIVQVQ  160 (187)
T ss_pred             cCCceEEEEE
Confidence            898 555543

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.57  E-value=2.8e-14  Score=115.34  Aligned_cols=142  Identities=20%  Similarity=0.309  Sum_probs=110.2

Q ss_pred             HHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCCC
Q psy2408          80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDNDS  156 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~  156 (298)
                      +.....+....+|||+|||+|.++..++++. .+++++||+++.+.+.|+++++.+++..++++++.|+.++  .....+
T Consensus        36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~  115 (248)
T COG4123          36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFAS  115 (248)
T ss_pred             HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccc
Confidence            3444555567899999999999999999984 5899999999999999999999999999999999999987  334467


Q ss_pred             eeEEEeccccccc----------------C--hH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCC
Q psy2408         157 FDGGWFFESIFHM----------------N--HS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNF  217 (298)
Q Consensus       157 fD~V~~~~~l~~~----------------~--~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (298)
                      ||+|+|+--.+-.                .  +. ++++.+.++|||||.+.+.-..        .              
T Consensus       116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~--------e--------------  173 (248)
T COG4123         116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP--------E--------------  173 (248)
T ss_pred             cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH--------H--------------
Confidence            9999995433221                1  12 8889999999999999986433        1              


Q ss_pred             CCcchHHHHHHhCCCcEEEEEeCCCCc
Q psy2408         218 ILVEHYPDLLNKSGFELIKIDDITSHV  244 (298)
Q Consensus       218 ~~~~~~~~~l~~~Gf~~~~~~~~~~~~  244 (298)
                       ...++.+++.+.+|.+.....+-...
T Consensus       174 -rl~ei~~~l~~~~~~~k~i~~V~p~~  199 (248)
T COG4123         174 -RLAEIIELLKSYNLEPKRIQFVYPKI  199 (248)
T ss_pred             -HHHHHHHHHHhcCCCceEEEEecCCC
Confidence             12366777777777777666554443

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.57  E-value=1.1e-13  Score=112.40  Aligned_cols=113  Identities=25%  Similarity=0.193  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ......++..+.+.++.+|||+|||+|..+..+++. ..+++++|+++.+++.+++++...++. +++++.+|..+...+
T Consensus        64 p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~  141 (212)
T PRK00312         64 PYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPA  141 (212)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCc
Confidence            455667777888889999999999999999888774 458999999999999999999988774 599999998653223


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .++||+|++...+.++     .+.+.+.|+|||++++...
T Consensus       142 ~~~fD~I~~~~~~~~~-----~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        142 YAPFDRILVTAAAPEI-----PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CCCcCEEEEccCchhh-----hHHHHHhcCCCcEEEEEEc
Confidence            4789999987766544     3467789999999988654

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.56  E-value=1.2e-13  Score=110.69  Aligned_cols=118  Identities=18%  Similarity=0.144  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-  149 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-  149 (298)
                      ...+....++..+.+.++.+|||+|||+|.++..+++. .+.+|+++|+|+.+++.+++++...++. +++++.+|+.+ 
T Consensus        24 t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~  102 (196)
T PRK07402         24 TKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPEC  102 (196)
T ss_pred             CHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHH
Confidence            34556666788888888899999999999999999865 3579999999999999999999887774 69999999865 


Q ss_pred             CCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         150 LPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       150 ~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ++.....+|.++...    ..+. .+++++.++|+|||++++....
T Consensus       103 ~~~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~  144 (196)
T PRK07402        103 LAQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS  144 (196)
T ss_pred             HhhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence            222123467765422    2344 8999999999999999998654

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.56  E-value=1.3e-14  Score=106.52  Aligned_cols=105  Identities=30%  Similarity=0.387  Sum_probs=87.8

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCCeeEEEecccc
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDSFDGGWFFESI  166 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~l  166 (298)
                      |.+|||+|||+|.++..+++....+++|+|+++..++.++.++...++..+++++++|+.+..  +++++||+|+++-..
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            568999999999999999985448999999999999999999999988788999999998764  678999999997666


Q ss_pred             cccC--------hH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         167 FHMN--------HS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       167 ~~~~--------~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ....        .. .+++++.++|+|||.+++..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            5321        12 889999999999999988643

...

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=1.1e-13  Score=110.84  Aligned_cols=112  Identities=21%  Similarity=0.291  Sum_probs=100.2

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      ...|+..+++.||++|||.|.|+|.++.+|+...  .++|+.+|+.+++++.|+++++..++.+++.+..+|+.+.-.+ 
T Consensus        83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~-  161 (256)
T COG2519          83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE-  161 (256)
T ss_pred             HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc-
Confidence            5678889999999999999999999999999863  3699999999999999999999999988899999999986554 


Q ss_pred             CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         155 DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +.||+|+.     -+++| .++..+.++|+|||.+++..+.
T Consensus       162 ~~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~  197 (256)
T COG2519         162 EDVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPT  197 (256)
T ss_pred             cccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence            48999865     68899 9999999999999999987655

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.55  E-value=9.6e-14  Score=119.85  Aligned_cols=115  Identities=25%  Similarity=0.226  Sum_probs=93.8

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCC
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDND  155 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~  155 (298)
                      .+++.+....+..+||||||+|..+..+|+.. +..++|+|+++.++..+.+++...++. |+.++++|+..+  .++++
T Consensus       113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~  191 (390)
T PRK14121        113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSN  191 (390)
T ss_pred             HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCC
Confidence            44555555566799999999999999999874 679999999999999999999988884 699999998764  46789


Q ss_pred             CeeEEEecccccccCh-------HHHHHHHhhcccCCcEEEEEeCC
Q psy2408         156 SFDGGWFFESIFHMNH-------SAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~-------~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ++|.|++....-+...       +.+++++.|+|+|||.+.+.+-.
T Consensus       192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~  237 (390)
T PRK14121        192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS  237 (390)
T ss_pred             ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence            9999998655433222       27999999999999999996543

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.55  E-value=3.5e-13  Score=114.11  Aligned_cols=119  Identities=18%  Similarity=0.163  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHhCC-CCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          73 SDKLSRIMINKTS-ITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        73 ~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      .+.++..++..+. ..++.+|||+|||+|.++..++... +.+++++|+|+.+++.|++++...++..++.++++|+.+ 
T Consensus        98 te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-  176 (284)
T TIGR00536        98 TEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-  176 (284)
T ss_pred             cHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-
Confidence            3455555555442 2233699999999999999999864 579999999999999999999988886679999999876 


Q ss_pred             CCCCCCeeEEEec-------------ccccccC------------hH-HHHHHHhhcccCCcEEEEEe
Q psy2408         151 PFDNDSFDGGWFF-------------ESIFHMN------------HS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       151 ~~~~~~fD~V~~~-------------~~l~~~~------------~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +++.++||+|+++             .++.|-+            .. .++.++.+.|+|||++++..
T Consensus       177 ~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~  244 (284)
T TIGR00536       177 PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI  244 (284)
T ss_pred             cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            3444589999985             2223322            22 78899999999999987753

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.54  E-value=2.6e-13  Score=112.44  Aligned_cols=140  Identities=21%  Similarity=0.231  Sum_probs=106.1

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC
Q psy2408          78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS  156 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  156 (298)
                      ..+......++..+|+|||+|+|.++..+++. ++.+++.+|+ |..++.+++       .++++++.+|+. -++|.  
T Consensus        90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P~--  158 (241)
T PF00891_consen   90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLPV--  158 (241)
T ss_dssp             HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCSS--
T ss_pred             hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhcc--
Confidence            56667777778889999999999999999987 4789999998 888888887       368999999998 46664  


Q ss_pred             eeEEEecccccccChH---HHHHHHhhcccCC--cEEEEEeCCCCCCCCChhHH--HHHHH----hhcccCCCCcchHHH
Q psy2408         157 FDGGWFFESIFHMNHS---AALNEARRVLKSG--SILTLTDLPLLSVSKNDNKF--KEYVK----KNIHSNFILVEHYPD  225 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~---~~l~~~~r~Lkpg--G~l~i~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~  225 (298)
                      +|++++.+++|++++.   .+|+++++.|+||  |+|+|.++........+...  .....    ......-++.++|++
T Consensus       159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~  238 (241)
T PF00891_consen  159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEA  238 (241)
T ss_dssp             ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHH
T ss_pred             ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHH
Confidence            9999999999999988   9999999999999  99999998876654422221  01111    122256677888888


Q ss_pred             HHH
Q psy2408         226 LLN  228 (298)
Q Consensus       226 ~l~  228 (298)
                      +|+
T Consensus       239 ll~  241 (241)
T PF00891_consen  239 LLK  241 (241)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.54  E-value=1.2e-13  Score=112.84  Aligned_cols=139  Identities=25%  Similarity=0.344  Sum_probs=108.1

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      .-...|+..+++.||.+|||.|.|+|.++..|++..  ..+|+.+|+.++..+.|++.++..++.+++.+.+.|+.+-.+
T Consensus        27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~  106 (247)
T PF08704_consen   27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF  106 (247)
T ss_dssp             HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred             chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence            346678889999999999999999999999999874  469999999999999999999999999899999999975433


Q ss_pred             C---CCCeeEEEecccccccChH-HHHHHHhhcc-cCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHH
Q psy2408         153 D---NDSFDGGWFFESIFHMNHS-AALNEARRVL-KSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLL  227 (298)
Q Consensus       153 ~---~~~fD~V~~~~~l~~~~~~-~~l~~~~r~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  227 (298)
                      +   ++.+|.|++     -+++| .++..+.++| +|||++++..++.       ..               .......|
T Consensus       107 ~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~i-------eQ---------------v~~~~~~L  159 (247)
T PF08704_consen  107 DEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCI-------EQ---------------VQKTVEAL  159 (247)
T ss_dssp             STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSH-------HH---------------HHHHHHHH
T ss_pred             cccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCH-------HH---------------HHHHHHHH
Confidence            2   367999865     67899 9999999999 8999999876661       11               22445677


Q ss_pred             HhCCCcEEEEEeC
Q psy2408         228 NKSGFELIKIDDI  240 (298)
Q Consensus       228 ~~~Gf~~~~~~~~  240 (298)
                      ++.||..++..++
T Consensus       160 ~~~gf~~i~~~Ev  172 (247)
T PF08704_consen  160 REHGFTDIETVEV  172 (247)
T ss_dssp             HHTTEEEEEEEEE
T ss_pred             HHCCCeeeEEEEE
Confidence            8899987765543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.54  E-value=1.7e-13  Score=118.25  Aligned_cols=114  Identities=21%  Similarity=0.237  Sum_probs=91.2

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND  155 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  155 (298)
                      .+.+++.+......+|||+|||+|.++..+++.. +.+|+++|+|+.+++.+++++...++.  ..++..|+...  ..+
T Consensus       185 t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~--~~~  260 (342)
T PRK09489        185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD--IKG  260 (342)
T ss_pred             HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc--cCC
Confidence            4455555554445689999999999999999864 569999999999999999999988764  56778887653  257


Q ss_pred             CeeEEEecccccccC-----hH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         156 SFDGGWFFESIFHMN-----HS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~-----~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +||+|+++-.++...     .. .+++++.+.|+|||.+++....
T Consensus       261 ~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        261 RFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             CccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            899999998877532     22 9999999999999999987544

>PHA03411 putative methyltransferase; Provisional

Probab=99.53  E-value=5.3e-13  Score=109.55  Aligned_cols=126  Identities=8%  Similarity=0.089  Sum_probs=94.2

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      .++.+|||+|||+|.++..++... +.+|+++|+|+.+++.+++++      +++.++++|+.++. ..++||+|+++-.
T Consensus        63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~-~~~kFDlIIsNPP  135 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFE-SNEKFDVVISNPP  135 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhc-ccCCCcEEEEcCC
Confidence            345699999999999998887754 579999999999999998763      25889999998875 3468999999887


Q ss_pred             ccccChH---------------------HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHH
Q psy2408         166 IFHMNHS---------------------AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP  224 (298)
Q Consensus       166 l~~~~~~---------------------~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (298)
                      +.+.+..                     .++..+..+|+|+|.+.+.-...                .....-.+.++++
T Consensus       136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~----------------~~y~~sl~~~~y~  199 (279)
T PHA03411        136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR----------------PYYDGTMKSNKYL  199 (279)
T ss_pred             ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc----------------ccccccCCHHHHH
Confidence            7765321                     35566678889999776651110                0112235677888


Q ss_pred             HHHHhCCCcEE
Q psy2408         225 DLLNKSGFELI  235 (298)
Q Consensus       225 ~~l~~~Gf~~~  235 (298)
                      .+|+++||...
T Consensus       200 ~~l~~~g~~~~  210 (279)
T PHA03411        200 KWSKQTGLVTY  210 (279)
T ss_pred             HHHHhcCcEec
Confidence            99999998643

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.53  E-value=6.1e-13  Score=112.56  Aligned_cols=139  Identities=27%  Similarity=0.328  Sum_probs=102.9

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      +.+.+.++......++.+|||+|||+|..+..++... ..+++++|+|+.+++.+++++. .....++.++++|+... +
T Consensus        94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~-~  171 (275)
T PRK09328         94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP-L  171 (275)
T ss_pred             HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc-C
Confidence            4556666655555678899999999999999999864 5799999999999999999987 33345799999998653 3


Q ss_pred             CCCCeeEEEeccccc--------------cc------------ChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHH
Q psy2408         153 DNDSFDGGWFFESIF--------------HM------------NHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKF  205 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~--------------~~------------~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~  205 (298)
                      +.++||+|+++-...              +-            ... .+++++.++|+|||++++.. ..          
T Consensus       172 ~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~----------  240 (275)
T PRK09328        172 PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-GY----------  240 (275)
T ss_pred             CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-Cc----------
Confidence            357899999852211              10            112 67888889999999998842 10          


Q ss_pred             HHHHHhhcccCCCCcchHHHHHHhCCCcEEEE
Q psy2408         206 KEYVKKNIHSNFILVEHYPDLLNKSGFELIKI  237 (298)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  237 (298)
                                  ...+.+..++++.||..+..
T Consensus       241 ------------~~~~~~~~~l~~~gf~~v~~  260 (275)
T PRK09328        241 ------------DQGEAVRALLAAAGFADVET  260 (275)
T ss_pred             ------------hHHHHHHHHHHhCCCceeEE
Confidence                        01235778888999975554

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.53  E-value=8.4e-13  Score=106.41  Aligned_cols=143  Identities=16%  Similarity=0.100  Sum_probs=106.0

Q ss_pred             HhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-----------cCCCCceEEEECCCCCC
Q psy2408          82 NKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA-----------EGLLDKVNFLHGDALNL  150 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~-----------~~~~~~i~~~~~d~~~~  150 (298)
                      ..+.+.++.+||+.|||.|..+..|+. .|.+|+|+|+|+..++.+.+....           ..-..+++++++|+.++
T Consensus        37 ~~l~~~~~~rvLvPgCGkg~D~~~LA~-~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l  115 (226)
T PRK13256         37 SKLNINDSSVCLIPMCGCSIDMLFFLS-KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL  115 (226)
T ss_pred             HhcCCCCCCeEEEeCCCChHHHHHHHh-CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC
Confidence            334445678999999999999999999 689999999999999988653110           00123689999999998


Q ss_pred             CCC---CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHH
Q psy2408         151 PFD---NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP  224 (298)
Q Consensus       151 ~~~---~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (298)
                      +.+   .+.||+|+-..++++++..   +..+.+.++|+|||.+++..+.......            ..+...+.+++.
T Consensus       116 ~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~------------GPPf~v~~~e~~  183 (226)
T PRK13256        116 PKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQ------------TPPYSVTQAELI  183 (226)
T ss_pred             CccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCC------------CCCCcCCHHHHH
Confidence            532   2689999999999999877   9999999999999998887664322111            122335667888


Q ss_pred             HHHHhCCCcEEEEE
Q psy2408         225 DLLNKSGFELIKID  238 (298)
Q Consensus       225 ~~l~~~Gf~~~~~~  238 (298)
                      +++.. +|.+..+.
T Consensus       184 ~lf~~-~~~i~~l~  196 (226)
T PRK13256        184 KNFSA-KIKFELID  196 (226)
T ss_pred             HhccC-CceEEEee
Confidence            77753 45555444

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.53  E-value=4.5e-13  Score=105.08  Aligned_cols=167  Identities=19%  Similarity=0.174  Sum_probs=122.0

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC-
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD-  153 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-  153 (298)
                      +.+.+.+.+. ..+.+|||||||||.-+.++++.+ ..+..-.|+++..+...+......+++.-..-+..|+...+.+ 
T Consensus        14 Il~vL~~~l~-~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~   92 (204)
T PF06080_consen   14 ILEVLKQYLP-DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW   92 (204)
T ss_pred             HHHHHHHHhC-ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence            3333434432 233359999999999999999985 5789999999999888888877777654445566777664222 


Q ss_pred             -------CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCC-CC--ChhHHHHH-HHhhcccCCCC
Q psy2408         154 -------NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSV-SK--NDNKFKEY-VKKNIHSNFIL  219 (298)
Q Consensus       154 -------~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~-~~--~~~~~~~~-~~~~~~~~~~~  219 (298)
                             .++||+|++..++|-++-.   .+++.+.++|++||.|++-.+...+. .+  ....+... ..........+
T Consensus        93 ~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD  172 (204)
T PF06080_consen   93 ELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRD  172 (204)
T ss_pred             ccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccC
Confidence                   4589999999999988877   99999999999999999976654331 11  12233322 22233456778


Q ss_pred             cchHHHHHHhCCCcEEEEEeCCCC
Q psy2408         220 VEHYPDLLNKSGFELIKIDDITSH  243 (298)
Q Consensus       220 ~~~~~~~l~~~Gf~~~~~~~~~~~  243 (298)
                      .+++..+..++|+..++..+++-+
T Consensus       173 ~e~v~~lA~~~GL~l~~~~~MPAN  196 (204)
T PF06080_consen  173 IEDVEALAAAHGLELEEDIDMPAN  196 (204)
T ss_pred             HHHHHHHHHHCCCccCcccccCCC
Confidence            889999999999999888877654

The function of this family is unknown.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.53  E-value=1e-13  Score=111.08  Aligned_cols=116  Identities=21%  Similarity=0.218  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN  149 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~  149 (298)
                      .+..+...+++.+.+.++.+|||||||+|..+..++...+  .+|+++|..+...+.|++++...+.. ++.++++|...
T Consensus        56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~  134 (209)
T PF01135_consen   56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSE  134 (209)
T ss_dssp             --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGG
T ss_pred             hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhh
Confidence            4467788899999999999999999999999999998644  37999999999999999999988874 79999999876


Q ss_pred             CCCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         150 LPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       150 ~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      --....+||.|++......++.     .+.+.|++||++++-.-
T Consensus       135 g~~~~apfD~I~v~~a~~~ip~-----~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  135 GWPEEAPFDRIIVTAAVPEIPE-----ALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             TTGGG-SEEEEEESSBBSS--H-----HHHHTEEEEEEEEEEES
T ss_pred             ccccCCCcCEEEEeeccchHHH-----HHHHhcCCCcEEEEEEc
Confidence            4224578999999988875554     46778999999998544

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.52  E-value=6.1e-13  Score=115.64  Aligned_cols=139  Identities=20%  Similarity=0.242  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      ..+.+++.++..+  .++.+|||+|||+|.++..++.. .+++++++|+|+.+++.|++++...+.  ++.++++|+.+.
T Consensus       237 eTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~  312 (423)
T PRK14966        237 ETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDT  312 (423)
T ss_pred             cHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhcc
Confidence            3456666666655  35569999999999999999875 467999999999999999999987764  699999998664


Q ss_pred             CCC-CCCeeEEEeccccc---------------------ccChH-----HHHHHHhhcccCCcEEEEEeCCCCCCCCChh
Q psy2408         151 PFD-NDSFDGGWFFESIF---------------------HMNHS-----AALNEARRVLKSGSILTLTDLPLLSVSKNDN  203 (298)
Q Consensus       151 ~~~-~~~fD~V~~~~~l~---------------------~~~~~-----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~  203 (298)
                      .++ .++||+|+++-...                     --.+.     .+++.+.+.|+|||.+++. ...        
T Consensus       313 ~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE-iG~--------  383 (423)
T PRK14966        313 DMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE-HGF--------  383 (423)
T ss_pred             ccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE-ECc--------
Confidence            332 46899999954211                     00111     5666777899999998763 221        


Q ss_pred             HHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEE
Q psy2408         204 KFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKI  237 (298)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  237 (298)
                                    ...+.+.+++++.||..++.
T Consensus       384 --------------~Q~e~V~~ll~~~Gf~~v~v  403 (423)
T PRK14966        384 --------------DQGAAVRGVLAENGFSGVET  403 (423)
T ss_pred             --------------cHHHHHHHHHHHCCCcEEEE
Confidence                          11346778888899976553

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.52  E-value=2.6e-13  Score=113.88  Aligned_cols=133  Identities=24%  Similarity=0.356  Sum_probs=96.8

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      +++-.+++.+ ..++.+|||+|||+|.+++..++ .|+ +|+++|+++..++.|++++..+++..++.+.  ...+  ..
T Consensus       149 ~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~--~~  222 (295)
T PF06325_consen  149 RLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED--LV  222 (295)
T ss_dssp             HHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC--TC
T ss_pred             HHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc--cc
Confidence            3333444444 35788999999999999998888 665 7999999999999999999999998766553  2222  23


Q ss_pred             CCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCC
Q psy2408         154 NDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG  231 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  231 (298)
                      .++||+|+++-..    +.  .++..+.++|+|||+++++.....                      ..+.+.+.+++ |
T Consensus       223 ~~~~dlvvANI~~----~vL~~l~~~~~~~l~~~G~lIlSGIl~~----------------------~~~~v~~a~~~-g  275 (295)
T PF06325_consen  223 EGKFDLVVANILA----DVLLELAPDIASLLKPGGYLILSGILEE----------------------QEDEVIEAYKQ-G  275 (295)
T ss_dssp             CS-EEEEEEES-H----HHHHHHHHHCHHHEEEEEEEEEEEEEGG----------------------GHHHHHHHHHT-T
T ss_pred             cccCCEEEECCCH----HHHHHHHHHHHHhhCCCCEEEEccccHH----------------------HHHHHHHHHHC-C
Confidence            4899999975433    33  788889999999999999865511                      12466777776 9


Q ss_pred             CcEEEEEeC
Q psy2408         232 FELIKIDDI  240 (298)
Q Consensus       232 f~~~~~~~~  240 (298)
                      |.+++....
T Consensus       276 ~~~~~~~~~  284 (295)
T PF06325_consen  276 FELVEEREE  284 (295)
T ss_dssp             EEEEEEEEE
T ss_pred             CEEEEEEEE
Confidence            998876643

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.50  E-value=4.7e-13  Score=114.09  Aligned_cols=113  Identities=19%  Similarity=0.255  Sum_probs=91.7

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ..+...+++.+.++++.+|||+|||+|.++..+++..+  ..|+++|+++.+++.|++++...+. .++.++++|+...+
T Consensus        66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~  144 (322)
T PRK13943         66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGV  144 (322)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcc
Confidence            44566777888888899999999999999999998654  4799999999999999999988887 46899999987764


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ...++||+|++...+.+++     ..+.+.|+|||++++..
T Consensus       145 ~~~~~fD~Ii~~~g~~~ip-----~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        145 PEFAPYDVIFVTVGVDEVP-----ETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             cccCCccEEEECCchHHhH-----HHHHHhcCCCCEEEEEe
Confidence            4456899999876554432     34667899999988854

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.50  E-value=5.4e-13  Score=119.27  Aligned_cols=125  Identities=17%  Similarity=0.179  Sum_probs=98.3

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      +.-...+...+.+.++.+|||+|||+|..+..+++.. +++++++|+++.+++.++++++..++..++.+..+|....+.
T Consensus       224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~  303 (426)
T TIGR00563       224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ  303 (426)
T ss_pred             CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence            4445566667778889999999999999999999865 479999999999999999999998876334456777665443


Q ss_pred             --CCCCeeEEEe------cccccccCh----------------H-HHHHHHhhcccCCcEEEEEeCCCCCC
Q psy2408         153 --DNDSFDGGWF------FESIFHMNH----------------S-AALNEARRVLKSGSILTLTDLPLLSV  198 (298)
Q Consensus       153 --~~~~fD~V~~------~~~l~~~~~----------------~-~~l~~~~r~LkpgG~l~i~~~~~~~~  198 (298)
                        +.++||.|++      .+++.+.++                . .+|.++.++|||||+++.++......
T Consensus       304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~  374 (426)
T TIGR00563       304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE  374 (426)
T ss_pred             cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence              4578999985      244544443                3 79999999999999999998776543

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.50  E-value=5.1e-13  Score=119.63  Aligned_cols=122  Identities=17%  Similarity=0.166  Sum_probs=98.5

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      +.....+...+.+.++.+|||+|||+|..+..+++..  .++|+++|+++.+++.+++++...|+. ++.++++|+..++
T Consensus       238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~  316 (434)
T PRK14901        238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLL  316 (434)
T ss_pred             CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcc
Confidence            4445555666777889999999999999999999864  358999999999999999999999885 5999999998765


Q ss_pred             ----CCCCCeeEEEec------ccccccCh----------------H-HHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         152 ----FDNDSFDGGWFF------ESIFHMNH----------------S-AALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       152 ----~~~~~fD~V~~~------~~l~~~~~----------------~-~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                          ...++||.|++.      .++.+-++                . .+|.++.++|||||+++.++....
T Consensus       317 ~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~  388 (434)
T PRK14901        317 ELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH  388 (434)
T ss_pred             cccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence                345789999963      34443332                3 789999999999999998876643

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.50  E-value=1.4e-12  Score=111.08  Aligned_cols=102  Identities=24%  Similarity=0.229  Sum_probs=83.1

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc--
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES--  165 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~--  165 (298)
                      +.+|||+|||+|.++..++... +.+|+++|+|+.+++.|++++...++.+++.++++|+.+. ++.++||+|+++-.  
T Consensus       134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi  212 (307)
T PRK11805        134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYV  212 (307)
T ss_pred             CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCC
Confidence            3689999999999999999864 6799999999999999999999888877899999998652 34568999998611  


Q ss_pred             -----------ccccC-----------h-H-HHHHHHhhcccCCcEEEEE
Q psy2408         166 -----------IFHMN-----------H-S-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       166 -----------l~~~~-----------~-~-~~l~~~~r~LkpgG~l~i~  191 (298)
                                 +.|-+           + . .+++++.+.|+|||++++.
T Consensus       213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E  262 (307)
T PRK11805        213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE  262 (307)
T ss_pred             CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                       11111           1 1 7789999999999999874

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.49  E-value=5.1e-13  Score=107.73  Aligned_cols=103  Identities=17%  Similarity=0.140  Sum_probs=80.0

Q ss_pred             HHHhCC-CCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----
Q psy2408          80 MINKTS-ITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----  151 (298)
Q Consensus        80 l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----  151 (298)
                      +.+... ++++.+|||+|||+|.++..+++..  +.+|+++|+++ |          ... .++.++++|+.+.+     
T Consensus        42 ~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~D~~~~~~~~~i  109 (209)
T PRK11188         42 IQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQGDFRDELVLKAL  109 (209)
T ss_pred             HHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEecCCCChHHHHHH
Confidence            334444 4788899999999999999999874  36899999988 1          112 35899999998853     


Q ss_pred             ---CCCCCeeEEEecccccccChH------------HHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 ---FDNDSFDGGWFFESIFHMNHS------------AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 ---~~~~~fD~V~~~~~l~~~~~~------------~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                         +.+++||+|++..+.++..++            .+|+++.++|+|||.+++..+.
T Consensus       110 ~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~  167 (209)
T PRK11188        110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ  167 (209)
T ss_pred             HHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence               557899999997766554332            4789999999999999997654

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.48  E-value=4e-13  Score=108.55  Aligned_cols=145  Identities=21%  Similarity=0.298  Sum_probs=103.7

Q ss_pred             HhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-cC----------CCCceEEEECCCCCC
Q psy2408          82 NKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA-EG----------LLDKVNFLHGDALNL  150 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~-~~----------~~~~i~~~~~d~~~~  150 (298)
                      +.+...++.+||..|||.|.....|++ .|.+|+|+|+|+..++.+.+.... ..          -.++|++.++|+.++
T Consensus        31 ~~l~~~~~~rvLvPgCG~g~D~~~La~-~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l  109 (218)
T PF05724_consen   31 DSLALKPGGRVLVPGCGKGYDMLWLAE-QGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL  109 (218)
T ss_dssp             HHHTTSTSEEEEETTTTTSCHHHHHHH-TTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred             HhcCCCCCCeEEEeCCCChHHHHHHHH-CCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence            335567788999999999999999999 588999999999999998443221 00          123688999999998


Q ss_pred             CCCC-CCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHH
Q psy2408         151 PFDN-DSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDL  226 (298)
Q Consensus       151 ~~~~-~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (298)
                      +... ++||+|+=..+++.++..   +..+.+.++|+|||.+++..........           ...+...+.+++.++
T Consensus       110 ~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~-----------~GPPf~v~~~ev~~l  178 (218)
T PF05724_consen  110 PPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM-----------EGPPFSVTEEEVREL  178 (218)
T ss_dssp             GGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS-----------SSSS----HHHHHHH
T ss_pred             ChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC-----------CCcCCCCCHHHHHHH
Confidence            5332 579999999999999876   9999999999999995444433221111           013334567888888


Q ss_pred             HHhCCCcEEEEEe
Q psy2408         227 LNKSGFELIKIDD  239 (298)
Q Consensus       227 l~~~Gf~~~~~~~  239 (298)
                      +. .+|++...+.
T Consensus       179 ~~-~~f~i~~l~~  190 (218)
T PF05724_consen  179 FG-PGFEIEELEE  190 (218)
T ss_dssp             HT-TTEEEEEEEE
T ss_pred             hc-CCcEEEEEec
Confidence            88 8899887765

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.47  E-value=1.7e-12  Score=117.85  Aligned_cols=103  Identities=20%  Similarity=0.180  Sum_probs=82.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecc--
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE--  164 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~--  164 (298)
                      ++.+|||+|||+|.++..++... +++++++|+|+.+++.|++++...++.+++.++++|+.+ +++.++||+|+++-  
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY  216 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY  216 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence            34689999999999999998764 679999999999999999999988887789999999865 23456899999842  


Q ss_pred             ------------cccccC--------h----H-HHHHHHhhcccCCcEEEEE
Q psy2408         165 ------------SIFHMN--------H----S-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       165 ------------~l~~~~--------~----~-~~l~~~~r~LkpgG~l~i~  191 (298)
                                  +..|-+        +    . .+++++.++|+|||.+++.
T Consensus       217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE  268 (506)
T PRK01544        217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE  268 (506)
T ss_pred             CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence                        111111        1    1 5678889999999998874

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.47  E-value=2.2e-12  Score=115.38  Aligned_cols=122  Identities=19%  Similarity=0.240  Sum_probs=95.0

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-  151 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-  151 (298)
                      +.....+...+.+.++.+|||+|||+|..+..+++..+ .+|+++|+|+.+++.+++++...++.  +.++++|+.+++ 
T Consensus       230 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~  307 (427)
T PRK10901        230 DAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQ  307 (427)
T ss_pred             CHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchh
Confidence            44455556667778899999999999999999998653 69999999999999999999988764  689999998753 


Q ss_pred             -CCCCCeeEEEeccc------ccccC---------------h-H-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         152 -FDNDSFDGGWFFES------IFHMN---------------H-S-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       152 -~~~~~fD~V~~~~~------l~~~~---------------~-~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                       ++.++||.|++...      +.+-+               . . .++..+.++|+|||++++++.....
T Consensus       308 ~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~  377 (427)
T PRK10901        308 WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP  377 (427)
T ss_pred             hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence             23578999995321      11111               1 2 6899999999999999998765443

>KOG1269|consensus

Probab=99.46  E-value=2.2e-13  Score=117.26  Aligned_cols=187  Identities=24%  Similarity=0.343  Sum_probs=147.7

Q ss_pred             cccccCcchhhhhhhccccccCCCCchhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCC
Q psy2408           6 TQKNKNKDIKDIKENKDIKENKGNKGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTS   85 (298)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   85 (298)
                      ......++.+..+.+...+........+.+.++|+.. ..+|...++..+|++.+......... .........+..  .
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~e~~~~~e~~~~~y~~~-~dl~~~~w~~~~h~~~~~e~~~~~~~-~~~~~~~~~l~~--~  107 (364)
T KOG1269|consen   32 NVISVDNYLTFIKKNAEINAEETEDLPEQIAKYYNNS-TDLYERNWGQSFHFGRIPEGNSNEMF-WIRHEGIVALRE--S  107 (364)
T ss_pred             hhhhhhhHhhhhhhhcccccccccccchHHHHHhccc-chhhhhhhccchhccCccchhHHHHH-HHhhcchHHHhh--c
Confidence            3334444445555555666666777788899999998 99999999999998876442111111 222233333333  3


Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      ..++..++|+|||.|....+++...++.++|+|.++..+..+.......++..+..++.+|+.+.|++++.||.|.+..+
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~  187 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV  187 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence            46777999999999999999999667899999999999999999988888887788899999998999999999999999


Q ss_pred             ccccChH-HHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         166 IFHMNHS-AALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       166 l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      .+|.++. ..++++.|+++|||.++..++...
T Consensus       188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~  219 (364)
T KOG1269|consen  188 VCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKT  219 (364)
T ss_pred             cccCCcHHHHHHHHhcccCCCceEEeHHHHHh
Confidence            9999999 999999999999999998766543

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.45  E-value=1.1e-12  Score=117.83  Aligned_cols=117  Identities=15%  Similarity=0.163  Sum_probs=93.2

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS  156 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  156 (298)
                      .....+.+.++.+|||+|||+|..+..+++..  +.+|+++|+|+.+++.+++++...|+. ++.++++|+..++ ++++
T Consensus       241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~~~  318 (445)
T PRK14904        241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PEEQ  318 (445)
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cCCC
Confidence            44455566788999999999999999888754  469999999999999999999998884 6999999998875 4578


Q ss_pred             eeEEEec------cccc---------------ccCh-H-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         157 FDGGWFF------ESIF---------------HMNH-S-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       157 fD~V~~~------~~l~---------------~~~~-~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      ||+|++.      .++.               ++.. . .+|.++.++|+|||+++.++.....
T Consensus       319 fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~  382 (445)
T PRK14904        319 PDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP  382 (445)
T ss_pred             CCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence            9999952      1211               1111 2 6899999999999999998777543

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.45  E-value=8.5e-13  Score=103.24  Aligned_cols=109  Identities=17%  Similarity=0.173  Sum_probs=84.6

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS  156 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  156 (298)
                      .+.+++.+.+.++.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++..   .++++++++|+.++++++.+
T Consensus         2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~   77 (169)
T smart00650        2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQ   77 (169)
T ss_pred             HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccC
Confidence            356777888888899999999999999999985 78999999999999999988754   24799999999998877667


Q ss_pred             eeEEEecccccccChHHHHHHHhh--cccCCcEEEEE
Q psy2408         157 FDGGWFFESIFHMNHSAALNEARR--VLKSGSILTLT  191 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~~~l~~~~r--~LkpgG~l~i~  191 (298)
                      ||.|+++-.. ++.. ..+..+..  .+.++|.+++.
T Consensus        78 ~d~vi~n~Py-~~~~-~~i~~~l~~~~~~~~~~l~~q  112 (169)
T smart00650       78 PYKVVGNLPY-NIST-PILFKLLEEPPAFRDAVLMVQ  112 (169)
T ss_pred             CCEEEECCCc-ccHH-HHHHHHHhcCCCcceEEEEEE
Confidence            9999886544 3333 23333332  24477887775

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=2.3e-12  Score=106.51  Aligned_cols=117  Identities=25%  Similarity=0.367  Sum_probs=97.1

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      +.-.+.+++.+....+.+|||+|||.|.++..+++.. ..+++.+|+|...++.+++++..+++.. ..+...|..+ +.
T Consensus       144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~-~v  221 (300)
T COG2813         144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYE-PV  221 (300)
T ss_pred             ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEecccc-cc
Confidence            4456777888887777799999999999999999975 5799999999999999999999888754 3667777765 33


Q ss_pred             CCCCeeEEEecccccccChH------HHHHHHhhcccCCcEEEEEeC
Q psy2408         153 DNDSFDGGWFFESIFHMNHS------AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~------~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ++ +||+|+++--+|.-..-      +++....+.|++||.|.|...
T Consensus       222 ~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         222 EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            33 99999999888754332      899999999999999998765

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.44  E-value=1.9e-12  Score=116.53  Aligned_cols=120  Identities=20%  Similarity=0.211  Sum_probs=93.7

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      +.....+...+.+.++.+|||+|||+|..+..+++..  +++++++|+++.+++.+++++...++. ++.++++|+.+++
T Consensus       236 d~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~  314 (444)
T PRK14902        236 DESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVH  314 (444)
T ss_pred             ChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCccccc
Confidence            3334445556667788999999999999999999864  569999999999999999999998885 4999999998763


Q ss_pred             --CCCCCeeEEEeccc------ccccC---------------h-H-HHHHHHhhcccCCcEEEEEeCCC
Q psy2408         152 --FDNDSFDGGWFFES------IFHMN---------------H-S-AALNEARRVLKSGSILTLTDLPL  195 (298)
Q Consensus       152 --~~~~~fD~V~~~~~------l~~~~---------------~-~-~~l~~~~r~LkpgG~l~i~~~~~  195 (298)
                        ++ ++||+|++...      +.+-+               . . .++.++.++|+|||+++.++...
T Consensus       315 ~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        315 EKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             chhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence              33 68999997421      11111               1 1 57999999999999999876553

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.44  E-value=1.1e-12  Score=109.86  Aligned_cols=114  Identities=16%  Similarity=0.115  Sum_probs=90.8

Q ss_pred             HhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeE
Q psy2408          82 NKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDG  159 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  159 (298)
                      ..+.+.++.+|||+|||+|..+..+++..  ...|+++|+++.+++.++++++..++. ++.+++.|...++...++||+
T Consensus        65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~  143 (264)
T TIGR00446        65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDA  143 (264)
T ss_pred             HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCE
Confidence            44566789999999999999999998864  358999999999999999999998874 689999998876544567999


Q ss_pred             EEecc------ccccc---------------ChH--HHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         160 GWFFE------SIFHM---------------NHS--AALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       160 V~~~~------~l~~~---------------~~~--~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      |++.-      ++..-               ...  .+|+++.++|||||+|+.++....
T Consensus       144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~  203 (264)
T TIGR00446       144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE  203 (264)
T ss_pred             EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            98621      12111               112  699999999999999998876543

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.44  E-value=1.8e-12  Score=101.11  Aligned_cols=127  Identities=26%  Similarity=0.394  Sum_probs=81.6

Q ss_pred             HHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC
Q psy2408          78 RIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS  156 (298)
Q Consensus        78 ~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  156 (298)
                      +.+++.+.- ++...|.|+|||.+.++..+..  +.+|..+|+-.                .+-.+..+|+..+|+++++
T Consensus        61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva----------------~n~~Vtacdia~vPL~~~s  122 (219)
T PF05148_consen   61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVA----------------PNPRVTACDIANVPLEDES  122 (219)
T ss_dssp             HHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-----------------SSTTEEES-TTS-S--TT-
T ss_pred             HHHHHHHHhcCCCEEEEECCCchHHHHHhccc--CceEEEeeccC----------------CCCCEEEecCccCcCCCCc
Confidence            344444433 3457999999999998855432  46899999954                2345788999999999999


Q ss_pred             eeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEE
Q psy2408         157 FDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIK  236 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  236 (298)
                      +|+++++.+|.-..-+.+++|+.|+|||||.|.|.+..                    .++.+.+.+.+.++..||.+..
T Consensus       123 vDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~--------------------SRf~~~~~F~~~~~~~GF~~~~  182 (219)
T PF05148_consen  123 VDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVK--------------------SRFENVKQFIKALKKLGFKLKS  182 (219)
T ss_dssp             EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEG--------------------GG-S-HHHHHHHHHCTTEEEEE
T ss_pred             eeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEec--------------------ccCcCHHHHHHHHHHCCCeEEe
Confidence            99999877775444449999999999999999999865                    1223456888999999999888


Q ss_pred             EEeCCC
Q psy2408         237 IDDITS  242 (298)
Q Consensus       237 ~~~~~~  242 (298)
                      ......
T Consensus       183 ~d~~n~  188 (219)
T PF05148_consen  183 KDESNK  188 (219)
T ss_dssp             EE--ST
T ss_pred             cccCCC
Confidence            654433

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.43  E-value=3.1e-12  Score=114.07  Aligned_cols=121  Identities=20%  Similarity=0.193  Sum_probs=95.7

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-C
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-F  152 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~  152 (298)
                      ....+...+.+.++.+|||+|||+|..+..++...  +.+|+++|+|+.+++.+++++...|+. ++.+++.|+..++ +
T Consensus       225 ~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~  303 (431)
T PRK14903        225 SSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEY  303 (431)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhh
Confidence            33444455677889999999999999999999864  579999999999999999999998885 5899999998765 3


Q ss_pred             CCCCeeEEEec------ccccccC----------------hH-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         153 DNDSFDGGWFF------ESIFHMN----------------HS-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       153 ~~~~fD~V~~~------~~l~~~~----------------~~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      ..++||.|++.      +++..-+                .. ++|.++.+.|+|||.++.++.....
T Consensus       304 ~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~  371 (431)
T PRK14903        304 VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK  371 (431)
T ss_pred             hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence            45789999862      2222111                12 6799999999999999998777443

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.43  E-value=1.1e-12  Score=112.29  Aligned_cols=107  Identities=22%  Similarity=0.174  Sum_probs=78.9

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc---------CCCCceEEEECCCCCC----CCC-
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE---------GLLDKVNFLHGDALNL----PFD-  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~---------~~~~~i~~~~~d~~~~----~~~-  153 (298)
                      ++.+|||+|||-|..+.-+....-..++|+|+|...++.|+++....         ...-...++.+|....    .++ 
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            78899999999998887777744469999999999999999999321         1112456788887643    123 


Q ss_pred             -CCCeeEEEecccccccCh-H----HHHHHHhhcccCCcEEEEEeCC
Q psy2408         154 -NDSFDGGWFFESIFHMNH-S----AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       154 -~~~fD~V~~~~~l~~~~~-~----~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                       ..+||+|-|.+++|+.-. .    .+|+++...|+|||+++.+.+.
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d  188 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD  188 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence             359999999999998633 2    7999999999999999998665

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG3010|consensus

Probab=99.43  E-value=1.9e-12  Score=102.39  Aligned_cols=103  Identities=17%  Similarity=0.118  Sum_probs=76.6

Q ss_pred             eEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccC
Q psy2408          91 RFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMN  170 (298)
Q Consensus        91 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~  170 (298)
                      .++|+|||+|..+..++.. --+|+|+|+|+.|++.|+......-..........+..++--.++++|+|++..++|++.
T Consensus        36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd  114 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD  114 (261)
T ss_pred             eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhc
Confidence            8999999999888888884 459999999999999888664322111112233333333322379999999999999998


Q ss_pred             hHHHHHHHhhcccCCc-EEEEEeCC
Q psy2408         171 HSAALNEARRVLKSGS-ILTLTDLP  194 (298)
Q Consensus       171 ~~~~l~~~~r~LkpgG-~l~i~~~~  194 (298)
                      ...+++++.|+||+.| .+.+=.++
T Consensus       115 le~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen  115 LERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence            8899999999999877 55554444

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.42  E-value=2.9e-12  Score=91.27  Aligned_cols=100  Identities=43%  Similarity=0.606  Sum_probs=83.2

Q ss_pred             eEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC-CCCCeeEEEecccccc-
Q psy2408          91 RFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF-DNDSFDGGWFFESIFH-  168 (298)
Q Consensus        91 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~~~l~~-  168 (298)
                      +|+|+|||.|..+..++...+.+++++|+++.++..+++..... ...++.++..|+.+... ..++||+|++..++++ 
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~   79 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence            58999999999999998844679999999999999998643332 33568999999988653 4578999999999988 


Q ss_pred             cChH-HHHHHHhhcccCCcEEEEE
Q psy2408         169 MNHS-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       169 ~~~~-~~l~~~~r~LkpgG~l~i~  191 (298)
                      .... .+++.+.+.|+|||.+++.
T Consensus        80 ~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            5555 9999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK04457 spermidine synthase; Provisional

Probab=99.40  E-value=3.3e-12  Score=106.58  Aligned_cols=108  Identities=14%  Similarity=0.079  Sum_probs=84.3

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-CCCCCCeeEEEecc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-PFDNDSFDGGWFFE  164 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~  164 (298)
                      +++.+|||||||+|.++..+++.. +.+++++|+++++++.|++.+...+..++++++.+|+.+. .-..++||+|++..
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            456799999999999999998864 6799999999999999999986554446899999998654 22236899998742


Q ss_pred             cc-cccCh----HHHHHHHhhcccCCcEEEEEeCC
Q psy2408         165 SI-FHMNH----SAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       165 ~l-~~~~~----~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .- ...+.    ..+++++.+.|+|||++++..+.
T Consensus       145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~  179 (262)
T PRK04457        145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS  179 (262)
T ss_pred             CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence            11 11221    29999999999999999986443

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.40  E-value=2.1e-11  Score=101.11  Aligned_cols=139  Identities=17%  Similarity=0.123  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          73 SDKLSRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        73 ~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      .+.+.+.++..+.. .++.+|||+|||+|.++..+++.. +.+++++|+|+.+++.+++++...+    ++++++|+.+.
T Consensus        70 Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~  145 (251)
T TIGR03704        70 TEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDA  145 (251)
T ss_pred             HHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhh
Confidence            34555555554432 234589999999999999998764 5699999999999999999987654    47889998653


Q ss_pred             -CC-CCCCeeEEEeccccc--------------cc--------Ch----H-HHHHHHhhcccCCcEEEEEeCCCCCCCCC
Q psy2408         151 -PF-DNDSFDGGWFFESIF--------------HM--------NH----S-AALNEARRVLKSGSILTLTDLPLLSVSKN  201 (298)
Q Consensus       151 -~~-~~~~fD~V~~~~~l~--------------~~--------~~----~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~  201 (298)
                       +. ..++||+|+++--..              |-        .+    . .++..+.++|+|||++++....       
T Consensus       146 l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~-------  218 (251)
T TIGR03704       146 LPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE-------  218 (251)
T ss_pred             cchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-------
Confidence             21 135799999863221              10        01    1 6777788999999999875322       


Q ss_pred             hhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEE
Q psy2408         202 DNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                       .               ..+++..++++.||......
T Consensus       219 -~---------------~~~~v~~~l~~~g~~~~~~~  239 (251)
T TIGR03704       219 -R---------------QAPLAVEAFARAGLIARVAS  239 (251)
T ss_pred             -c---------------hHHHHHHHHHHCCCCceeeE
Confidence             0               12356778888888755433

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=1.7e-11  Score=102.92  Aligned_cols=136  Identities=26%  Similarity=0.281  Sum_probs=97.1

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      ..+++.++......+. +|||+|||+|..+..++... .++|+++|+|+..++.|++++...++ .++.++..|..+ +.
T Consensus        97 e~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~-~~  173 (280)
T COG2890          97 ELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFE-PL  173 (280)
T ss_pred             HHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccc-cc
Confidence            4555555433332233 89999999999999999975 46999999999999999999999998 567777777655 33


Q ss_pred             CCCCeeEEEecccc-------------cc--------cCh---H--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHH
Q psy2408         153 DNDSFDGGWFFESI-------------FH--------MNH---S--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFK  206 (298)
Q Consensus       153 ~~~~fD~V~~~~~l-------------~~--------~~~---~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~  206 (298)
                      + ++||+|+++--.             .|        -.+   .  .++.++.+.|+|||.+++..-.            
T Consensus       174 ~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~------------  240 (280)
T COG2890         174 R-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL------------  240 (280)
T ss_pred             C-CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC------------
Confidence            3 489999984211             01        011   1  7888899999999888774321            


Q ss_pred             HHHHhhcccCCCCcchHHHHHHhCC-CcEEE
Q psy2408         207 EYVKKNIHSNFILVEHYPDLLNKSG-FELIK  236 (298)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~  236 (298)
                                 ...+.+.+++.+.| |..+.
T Consensus       241 -----------~q~~~v~~~~~~~~~~~~v~  260 (280)
T COG2890         241 -----------TQGEAVKALFEDTGFFEIVE  260 (280)
T ss_pred             -----------CcHHHHHHHHHhcCCceEEE
Confidence                       12356788889999 55443

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.39  E-value=6.7e-12  Score=102.99  Aligned_cols=118  Identities=20%  Similarity=0.278  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      ..++...++..   .++.+|||+|||+|..+..++...  +.+++++|+++++++.|++++...++.++++++.+|+.+.
T Consensus        56 ~g~~L~~l~~~---~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~  132 (234)
T PLN02781         56 EGLFLSMLVKI---MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA  132 (234)
T ss_pred             HHHHHHHHHHH---hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH
Confidence            34444444444   456799999999999988888763  4699999999999999999999999988999999999764


Q ss_pred             -C-----CCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         151 -P-----FDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       151 -~-----~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                       +     .+.++||+|++...    ++.  .++..+.+.|+|||.+++.+..+.+
T Consensus       133 L~~l~~~~~~~~fD~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G  183 (234)
T PLN02781        133 LDQLLNNDPKPEFDFAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDNTLWFG  183 (234)
T ss_pred             HHHHHhCCCCCCCCEEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEcCCcCC
Confidence             1     12468999987432    233  8899999999999999887765544

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.37  E-value=1.3e-11  Score=116.66  Aligned_cols=130  Identities=20%  Similarity=0.238  Sum_probs=98.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCC-CCCCCCeeEEEecc
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGDALNL-PFDNDSFDGGWFFE  164 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d~~~~-~~~~~~fD~V~~~~  164 (298)
                      ++.+|||+|||+|.++..++.. |+ +|+++|+|+.+++.+++++..+++. .+++++++|+.++ .-..++||+|++.-
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP  616 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP  616 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence            5789999999999999999984 55 6999999999999999999998886 5799999998764 11146899999842


Q ss_pred             c-----------ccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCC
Q psy2408         165 S-----------IFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGF  232 (298)
Q Consensus       165 ~-----------l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  232 (298)
                      -           .....+. .++..+.++|+|||.+++.....  ..                     ......+.++|+
T Consensus       617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~--~~---------------------~~~~~~~~~~g~  673 (702)
T PRK11783        617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR--GF---------------------KMDEEGLAKLGL  673 (702)
T ss_pred             CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc--cC---------------------ChhHHHHHhCCC
Confidence            1           1112233 78889999999999988864321  00                     112567788999


Q ss_pred             cEEEEEeCC
Q psy2408         233 ELIKIDDIT  241 (298)
Q Consensus       233 ~~~~~~~~~  241 (298)
                      .+..+...+
T Consensus       674 ~~~~i~~~~  682 (702)
T PRK11783        674 KAEEITAKT  682 (702)
T ss_pred             eEEEEecCC
Confidence            888776543

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.36  E-value=9.6e-12  Score=99.04  Aligned_cols=103  Identities=19%  Similarity=0.222  Sum_probs=75.9

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----
Q psy2408          78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----  151 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----  151 (298)
                      +..-....+.++.+|||+|||+|.++..++...  ..+++++|+|+.+           .. .++.+++.|+.+.+    
T Consensus        22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~   89 (188)
T TIGR00438        22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNK   89 (188)
T ss_pred             HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHH
Confidence            333334455789999999999999999988764  3589999999854           11 35788888987642    


Q ss_pred             ----CCCCCeeEEEecccc--------cccC---hH-HHHHHHhhcccCCcEEEEEe
Q psy2408         152 ----FDNDSFDGGWFFESI--------FHMN---HS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       152 ----~~~~~fD~V~~~~~l--------~~~~---~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                          ++.++||+|++..+.        .|..   .. .++.++.++|+|||++++..
T Consensus        90 l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438        90 IRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             HHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence                346789999985432        1211   12 78999999999999999864

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=99.35  E-value=8.3e-11  Score=96.14  Aligned_cols=147  Identities=18%  Similarity=0.148  Sum_probs=116.3

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-C--CCCCeeEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-G--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-F--DNDSFDGG  160 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~--~~~~fD~V  160 (298)
                      ..+-+||||.||.|.......... .  .++...|.|+..++..++.++..|+.+.++|.++|+.+.. +  -+...+++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            356799999999999988877753 2  5899999999999999999999999877799999987741 1  13457999


Q ss_pred             EecccccccChH----HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh-----hcccCCCCcchHHHHHHhCC
Q psy2408         161 WFFESIFHMNHS----AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK-----NIHSNFILVEHYPDLLNKSG  231 (298)
Q Consensus       161 ~~~~~l~~~~~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~G  231 (298)
                      +.+..++.++|.    ..+..+.+++.|||+++.+..++.+...   ........     ...-...+..++.++++++|
T Consensus       214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle---~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aG  290 (311)
T PF12147_consen  214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLE---MIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAG  290 (311)
T ss_pred             EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchH---HHHHHHhcccCCCceEEEecCHHHHHHHHHHcC
Confidence            999999999986    6789999999999999999877766543   11111111     22234567899999999999


Q ss_pred             CcEEE
Q psy2408         232 FELIK  236 (298)
Q Consensus       232 f~~~~  236 (298)
                      |+-+.
T Consensus       291 F~K~~  295 (311)
T PF12147_consen  291 FEKID  295 (311)
T ss_pred             Cchhh
Confidence            98554

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.35  E-value=3.1e-11  Score=108.53  Aligned_cols=145  Identities=19%  Similarity=0.264  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-  150 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-  150 (298)
                      ..+.+.+.+++.+.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++. +++++++|+.+. 
T Consensus       281 ~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l  358 (443)
T PRK13168        281 VNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDF  358 (443)
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhh
Confidence            35677888888888778899999999999999999984 579999999999999999999888874 699999998653 


Q ss_pred             ---CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHH
Q psy2408         151 ---PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLL  227 (298)
Q Consensus       151 ---~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  227 (298)
                         ++++++||+|++.-.-.-  ....+..+.+ ++|++.+++++-+.+        +              ..++. .|
T Consensus       359 ~~~~~~~~~fD~Vi~dPPr~g--~~~~~~~l~~-~~~~~ivyvSCnp~t--------l--------------aRDl~-~L  412 (443)
T PRK13168        359 TDQPWALGGFDKVLLDPPRAG--AAEVMQALAK-LGPKRIVYVSCNPAT--------L--------------ARDAG-VL  412 (443)
T ss_pred             hhhhhhcCCCCEEEECcCCcC--hHHHHHHHHh-cCCCeEEEEEeChHH--------h--------------hccHH-HH
Confidence               244568999987432211  1145555555 589998888764311        0              01333 44


Q ss_pred             HhCCCcEEEEEeCCCCc
Q psy2408         228 NKSGFELIKIDDITSHV  244 (298)
Q Consensus       228 ~~~Gf~~~~~~~~~~~~  244 (298)
                      .+.||++..+..+..-.
T Consensus       413 ~~~gY~l~~i~~~DmFP  429 (443)
T PRK13168        413 VEAGYRLKRAGMLDMFP  429 (443)
T ss_pred             hhCCcEEEEEEEeccCC
Confidence            57899999887665443

>KOG1975|consensus

Probab=99.34  E-value=4.3e-12  Score=104.34  Aligned_cols=118  Identities=20%  Similarity=0.239  Sum_probs=89.2

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-CC----ceEEEECCCCCC-
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL-LD----KVNFLHGDALNL-  150 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~----~i~~~~~d~~~~-  150 (298)
                      +...+-..-.+++..++|+|||-|..++-+-+..-..++|+|+++..+++|+.+...-.- ..    .+.|+.+|.... 
T Consensus       106 IKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~  185 (389)
T KOG1975|consen  106 IKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER  185 (389)
T ss_pred             HHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence            333333333478899999999999988887774335899999999999999999774221 11    367899987652 


Q ss_pred             -----CCCCCCeeEEEecccccccChH-----HHHHHHhhcccCCcEEEEEeCC
Q psy2408         151 -----PFDNDSFDGGWFFESIFHMNHS-----AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       151 -----~~~~~~fD~V~~~~~l~~~~~~-----~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                           ++++.+||+|-|.+++|+.-..     .+|+++.+.|+|||+++-+.+.
T Consensus       186 l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd  239 (389)
T KOG1975|consen  186 LMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD  239 (389)
T ss_pred             HHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence                 4455569999999999875322     8999999999999998876554

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.33  E-value=1.6e-11  Score=99.12  Aligned_cols=146  Identities=20%  Similarity=0.160  Sum_probs=97.7

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccc
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIF  167 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~  167 (298)
                      ...++||||+|.|..+..++.. -.+|++.+.|+.|....+++    |    .+++  |..++.-.+.+||+|.|..++.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g----~~vl--~~~~w~~~~~~fDvIscLNvLD  162 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----G----FTVL--DIDDWQQTDFKFDVISCLNVLD  162 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----C----CeEE--ehhhhhccCCceEEEeehhhhh
Confidence            4568999999999999999884 45899999999997766544    3    3333  3333433356899999999999


Q ss_pred             ccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCC-----ChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCC
Q psy2408         168 HMNHS-AALNEARRVLKSGSILTLTDLPLLSVSK-----NDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       168 ~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                      ...+| .+|+.+++.|+|+|+++++...+..+.-     ......+...-.....--....+.+.|+.+||+++.....+
T Consensus       163 Rc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P  242 (265)
T PF05219_consen  163 RCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLP  242 (265)
T ss_pred             ccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence            99999 9999999999999999987543222110     00000000000000000012334478899999999988766


Q ss_pred             CCc
Q psy2408         242 SHV  244 (298)
Q Consensus       242 ~~~  244 (298)
                      .-+
T Consensus       243 YLc  245 (265)
T PF05219_consen  243 YLC  245 (265)
T ss_pred             ccc
Confidence            543

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.33  E-value=3.1e-11  Score=101.70  Aligned_cols=118  Identities=29%  Similarity=0.334  Sum_probs=98.9

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DALNLPF  152 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~~~~  152 (298)
                      .++++.+++...+.+|..|||--||||.+++...- .|++++|+|++..|+.-|+.+++..++.+ ..+... |+..+|+
T Consensus       183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl  260 (347)
T COG1041         183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGL-MGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPL  260 (347)
T ss_pred             HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhh-cCceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCC
Confidence            57788889999999999999999999999988877 79999999999999999999999988765 444554 9999999


Q ss_pred             CCCCeeEEEeccc------ccc--cChH--HHHHHHhhcccCCcEEEEEeC
Q psy2408         153 DNDSFDGGWFFES------IFH--MNHS--AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       153 ~~~~fD~V~~~~~------l~~--~~~~--~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +++++|.|++---      ..-  +...  .+|..+.++|++||++++..+
T Consensus       261 ~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         261 RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            8888999997321      111  1233  999999999999999998644

>PRK00811 spermidine synthase; Provisional

Probab=99.33  E-value=1.1e-11  Score=104.63  Aligned_cols=106  Identities=18%  Similarity=0.135  Sum_probs=83.2

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC--C--CCceEEEECCCCCC-CCCCCCeeEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEG--L--LDKVNFLHGDALNL-PFDNDSFDGG  160 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~--~--~~~i~~~~~d~~~~-~~~~~~fD~V  160 (298)
                      +.+.+||+||||+|..+..+++..+ .+|++||+++.+++.|++.+...+  .  +++++++.+|+..+ ....++||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            3567999999999999999988644 589999999999999999886432  1  45799999998764 3245789999


Q ss_pred             EecccccccCh-----HHHHHHHhhcccCCcEEEEEe
Q psy2408         161 WFFESIFHMNH-----SAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       161 ~~~~~l~~~~~-----~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ++...-.+.+.     ..+++.+.+.|+|||.+++..
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence            98543332222     178999999999999988753

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.33  E-value=2.7e-11  Score=96.71  Aligned_cols=117  Identities=23%  Similarity=0.359  Sum_probs=95.1

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE-CCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH-GDALNL  150 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~-~d~~~~  150 (298)
                      -.+...++.   ..++.+|||||++.|..++.++...  ..+++.+|+++++.+.|++++.+.|+.+++.++. +|..+.
T Consensus        48 g~~L~~L~~---~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~  124 (219)
T COG4122          48 GALLRLLAR---LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV  124 (219)
T ss_pred             HHHHHHHHH---hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence            344444443   3567899999999999999999874  4799999999999999999999999998898888 476553


Q ss_pred             -C-CCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         151 -P-FDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       151 -~-~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                       . ...++||+|+.    .+-+..  .++..+.++|+|||.+++.+..+.+
T Consensus       125 l~~~~~~~fDliFI----DadK~~yp~~le~~~~lLr~GGliv~DNvl~~G  171 (219)
T COG4122         125 LSRLLDGSFDLVFI----DADKADYPEYLERALPLLRPGGLIVADNVLFGG  171 (219)
T ss_pred             HHhccCCCccEEEE----eCChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence             2 34689999985    344444  9999999999999999998877665

>KOG3045|consensus

Probab=99.31  E-value=1.6e-11  Score=97.91  Aligned_cols=119  Identities=25%  Similarity=0.397  Sum_probs=89.9

Q ss_pred             HHHhCCCC-CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee
Q psy2408          80 MINKTSIT-KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD  158 (298)
Q Consensus        80 l~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  158 (298)
                      +++.+... ....|.|+|||-+.++.    .....|+.+|+-.                .+-+++.+|+.++|+++++.|
T Consensus       171 ii~~ik~r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~d~svD  230 (325)
T KOG3045|consen  171 IIRKIKRRPKNIVIADFGCGEAKIAS----SERHKVHSFDLVA----------------VNERVIACDMRNVPLEDESVD  230 (325)
T ss_pred             HHHHHHhCcCceEEEecccchhhhhh----ccccceeeeeeec----------------CCCceeeccccCCcCccCccc
Confidence            34444333 34688999999987765    2346899999843                345789999999999999999


Q ss_pred             EEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEE
Q psy2408         159 GGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKI  237 (298)
Q Consensus       159 ~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  237 (298)
                      ++|++.+|.- .+. .++.++.|+|+|||.++|.+..                    .++.+...+...|...||.+...
T Consensus       231 vaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~--------------------SRf~dv~~f~r~l~~lGF~~~~~  289 (325)
T KOG3045|consen  231 VAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVK--------------------SRFSDVKGFVRALTKLGFDVKHK  289 (325)
T ss_pred             EEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehh--------------------hhcccHHHHHHHHHHcCCeeeeh
Confidence            9998766642 233 9999999999999999998765                    12334456888999999987765


Q ss_pred             Ee
Q psy2408         238 DD  239 (298)
Q Consensus       238 ~~  239 (298)
                      ..
T Consensus       290 d~  291 (325)
T KOG3045|consen  290 DV  291 (325)
T ss_pred             hh
Confidence            44

>KOG2899|consensus

Probab=99.30  E-value=3e-11  Score=95.60  Aligned_cols=150  Identities=24%  Similarity=0.309  Sum_probs=97.3

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC------------------------------
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEG------------------------------  135 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~------------------------------  135 (298)
                      ..+..+|||||.+|.++..+++.+++ .+.|+|+++..++.|+..++...                              
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a  136 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA  136 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence            46779999999999999999998764 79999999999999998765211                              


Q ss_pred             ----CCCceEEE-------ECCCCCCCCCCCCeeEEEeccccccc----ChH---HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         136 ----LLDKVNFL-------HGDALNLPFDNDSFDGGWFFESIFHM----NHS---AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       136 ----~~~~i~~~-------~~d~~~~~~~~~~fD~V~~~~~l~~~----~~~---~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                          +++++.|.       ..|+.  .+....||+|+|..+--++    .|.   .+++++.++|.|||+|++.--.|..
T Consensus       137 ~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWks  214 (288)
T KOG2899|consen  137 FTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKS  214 (288)
T ss_pred             ccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHH
Confidence                00111111       11222  1234679999986555433    344   9999999999999999885444333


Q ss_pred             CCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEe
Q psy2408         198 VSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDD  239 (298)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  239 (298)
                      ... .....+..........+.++.+..++.+.+.-....++
T Consensus       215 Y~k-aar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~  255 (288)
T KOG2899|consen  215 YKK-AARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVED  255 (288)
T ss_pred             HHH-HHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeecc
Confidence            211 11111122223344566788888998887443333333

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.29  E-value=2.8e-11  Score=96.74  Aligned_cols=121  Identities=22%  Similarity=0.369  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC
Q psy2408          70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA  147 (298)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~  147 (298)
                      .....++...++...   ...+||||||++|..+..+++..  +++++.+|++++..+.|++.+...|+.++|+++.+|+
T Consensus        30 ~~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda  106 (205)
T PF01596_consen   30 SPETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA  106 (205)
T ss_dssp             HHHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred             CHHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence            444556666666654   45699999999999999999863  5799999999999999999999999988999999998


Q ss_pred             CCC-C-----CCCCCeeEEEecccccccCh-H-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         148 LNL-P-----FDNDSFDGGWFFESIFHMNH-S-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       148 ~~~-~-----~~~~~fD~V~~~~~l~~~~~-~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      .+. +     .+.++||+|+.-..    +. . .++..+.++|+|||.+++.+..+.+
T Consensus       107 ~~~l~~l~~~~~~~~fD~VFiDa~----K~~y~~y~~~~~~ll~~ggvii~DN~l~~G  160 (205)
T PF01596_consen  107 LEVLPELANDGEEGQFDFVFIDAD----KRNYLEYFEKALPLLRPGGVIIADNVLWRG  160 (205)
T ss_dssp             HHHHHHHHHTTTTTSEEEEEEEST----GGGHHHHHHHHHHHEEEEEEEEEETTTGGG
T ss_pred             HhhHHHHHhccCCCceeEEEEccc----ccchhhHHHHHhhhccCCeEEEEccccccc
Confidence            763 1     11358999986542    33 3 8888999999999999998766544

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK03612 spermidine synthase; Provisional

Probab=99.29  E-value=2.4e-11  Score=110.97  Aligned_cols=106  Identities=19%  Similarity=0.129  Sum_probs=81.6

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHH--HHhc---CC-CCceEEEECCCCCC-CCCCCCee
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKT--AKAE---GL-LDKVNFLHGDALNL-PFDNDSFD  158 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~--~~~~---~~-~~~i~~~~~d~~~~-~~~~~~fD  158 (298)
                      +++.+|||+|||+|..+..+++..+ .+++++|+++++++.+++.  +...   .. +++++++.+|..+. ....++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            4567999999999999999988544 6999999999999999983  3221   12 25799999998774 22347899


Q ss_pred             EEEecccccccCh------HHHHHHHhhcccCCcEEEEEe
Q psy2408         159 GGWFFESIFHMNH------SAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       159 ~V~~~~~l~~~~~------~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +|++.......+.      .++++.+.+.|+|||.+++..
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            9998754333222      168999999999999998864

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.29  E-value=4.8e-11  Score=102.58  Aligned_cols=117  Identities=20%  Similarity=0.149  Sum_probs=84.1

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC-
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF-  152 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~-  152 (298)
                      ..+.+.+.+.+...++.+|||+|||+|.++..++. .+.+|+|+|+|+.+++.|++++...++ .+++++++|+.++.. 
T Consensus       159 ~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~-~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~  236 (315)
T PRK03522        159 AQLYATARDWVRELPPRSMWDLFCGVGGFGLHCAT-PGMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATA  236 (315)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHh
Confidence            34444444554433568999999999999999998 568999999999999999999998888 579999999977532 


Q ss_pred             CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ..++||+|++.-.-.-+  ...+.+...-++|++.+++++-.
T Consensus       237 ~~~~~D~Vv~dPPr~G~--~~~~~~~l~~~~~~~ivyvsc~p  276 (315)
T PRK03522        237 QGEVPDLVLVNPPRRGI--GKELCDYLSQMAPRFILYSSCNA  276 (315)
T ss_pred             cCCCCeEEEECCCCCCc--cHHHHHHHHHcCCCeEEEEECCc
Confidence            23579999876321101  12222333336788777776544

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.28  E-value=8.6e-11  Score=93.56  Aligned_cols=124  Identities=10%  Similarity=0.087  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC
Q psy2408          69 FAQGSDKLSRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA  147 (298)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~  147 (298)
                      .+...+.+.+.++..+.. .++.+|||+|||+|.++..++.....+|+++|.++.+++.++++++..++. ++.++++|+
T Consensus        33 ~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~  111 (199)
T PRK10909         33 LRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNA  111 (199)
T ss_pred             cCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchH
Confidence            344556666666665532 457899999999999998755544569999999999999999999988874 699999998


Q ss_pred             CCC-CCCCCCeeEEEecccccccChH-HHHHHHhh--cccCCcEEEEEeCC
Q psy2408         148 LNL-PFDNDSFDGGWFFESIFHMNHS-AALNEARR--VLKSGSILTLTDLP  194 (298)
Q Consensus       148 ~~~-~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r--~LkpgG~l~i~~~~  194 (298)
                      .+. +...++||+|++.--... .-. .++..+..  +|+|++.+++....
T Consensus       112 ~~~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        112 LSFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             HHHHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            763 222457999998766322 212 55555544  47899988886544

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.28  E-value=4.2e-11  Score=105.31  Aligned_cols=108  Identities=18%  Similarity=0.137  Sum_probs=83.2

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCCC--C--CCCCeeEEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGDALNLP--F--DNDSFDGGW  161 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~--~~~~fD~V~  161 (298)
                      .++.+|||+|||+|.++..++.....+|+++|+|+.+++.+++++..+++. .+++++++|+.++-  +  ..++||+|+
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi  298 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence            367899999999999988766532348999999999999999999998886 47999999997741  1  246899999


Q ss_pred             ecccccccC---------hH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         162 FFESIFHMN---------HS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       162 ~~~~l~~~~---------~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +.-....-.         +. .++..+.++|+|||.++....+
T Consensus       299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs  341 (396)
T PRK15128        299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS  341 (396)
T ss_pred             ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            864332111         12 5566788999999999876533

>PLN02476 O-methyltransferase

Probab=99.27  E-value=8.8e-11  Score=97.54  Aligned_cols=121  Identities=16%  Similarity=0.208  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC
Q psy2408          71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL  148 (298)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~  148 (298)
                      ..+.++...++..   .++.+||||||++|..+..++...  +.+++++|.+++..+.|++.++..|+.++++++.+|+.
T Consensus       104 ~~~g~lL~~L~~~---~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~  180 (278)
T PLN02476        104 PDQAQLLAMLVQI---LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA  180 (278)
T ss_pred             HHHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            3444555555544   356799999999999999999863  56899999999999999999999999989999999986


Q ss_pred             CC-C-C----CCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCCC
Q psy2408         149 NL-P-F----DNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSV  198 (298)
Q Consensus       149 ~~-~-~----~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~  198 (298)
                      +. + +    ..++||+|+.-..    +..  .++..+.+.|+|||.+++.+..+.+.
T Consensus       181 e~L~~l~~~~~~~~FD~VFIDa~----K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~  234 (278)
T PLN02476        181 ESLKSMIQNGEGSSYDFAFVDAD----KRMYQDYFELLLQLVRVGGVIVMDNVLWHGR  234 (278)
T ss_pred             HHHHHHHhcccCCCCCEEEECCC----HHHHHHHHHHHHHhcCCCcEEEEecCccCCc
Confidence            63 2 1    1368999986442    333  89999999999999999987766553

>PRK01581 speE spermidine synthase; Validated

Probab=99.27  E-value=2.3e-10  Score=97.75  Aligned_cols=106  Identities=14%  Similarity=0.059  Sum_probs=79.5

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHH--H---hcCC-CCceEEEECCCCCC-CCCCCCee
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTA--K---AEGL-LDKVNFLHGDALNL-PFDNDSFD  158 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~--~---~~~~-~~~i~~~~~d~~~~-~~~~~~fD  158 (298)
                      ..+.+||++|||+|..+..+.+.. ..+|++||+++++++.|++..  .   ...+ +++++++.+|+.++ .-..++||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            345699999999999998888854 369999999999999999621  1   1122 36899999999874 33357899


Q ss_pred             EEEeccccc---ccChH---HHHHHHhhcccCCcEEEEEe
Q psy2408         159 GGWFFESIF---HMNHS---AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       159 ~V~~~~~l~---~~~~~---~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +|++...-.   .....   .+++.+++.|+|||.+++..
T Consensus       229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs  268 (374)
T PRK01581        229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS  268 (374)
T ss_pred             EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            999863211   11111   79999999999999988863

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.26  E-value=1.1e-10  Score=92.46  Aligned_cols=121  Identities=21%  Similarity=0.226  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHH----HHHHHHh----c--CCeEEEEeCCHHHHHHHHHHH----------
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLS----GIRLAKA----K--GCRVDGITISKFQQESAMKTA----------  131 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~----~~~l~~~----~--~~~v~~vD~s~~~l~~a~~~~----------  131 (298)
                      -...+...+++.....+..+|+.+||++|.=    ++.+.+.    .  ..+++|.|+|+.+++.|++-.          
T Consensus        15 l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~   94 (196)
T PF01739_consen   15 LRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLP   94 (196)
T ss_dssp             HHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-
T ss_pred             HHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhH
Confidence            3333433344444334668999999999954    3333331    1  258999999999999998730          


Q ss_pred             ---------HhcC--------CCCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEE
Q psy2408         132 ---------KAEG--------LLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       132 ---------~~~~--------~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~  191 (298)
                               ...+        +..++.|...|+.+.+.+.+.||+|+|..|+-++...   .+++.+++.|+|||+|++.
T Consensus        95 ~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen   95 PAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             HHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                     0000        1247899999998843346899999999999999887   9999999999999999996


Q ss_pred             e
Q psy2408         192 D  192 (298)
Q Consensus       192 ~  192 (298)
                      .
T Consensus       175 ~  175 (196)
T PF01739_consen  175 H  175 (196)
T ss_dssp             T
T ss_pred             c
Confidence            3

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PLN02366 spermidine synthase

Probab=99.25  E-value=7.3e-11  Score=100.20  Aligned_cols=107  Identities=16%  Similarity=0.146  Sum_probs=83.1

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC--C-CCceEEEECCCCCC--CCCCCCeeEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEG--L-LDKVNFLHGDALNL--PFDNDSFDGG  160 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~--~-~~~i~~~~~d~~~~--~~~~~~fD~V  160 (298)
                      +.+.+||+||||.|..+..+++..+ .+|+.||+++.+++.|++.+...+  + +++++++.+|+...  ..+.++||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            4567999999999999999998654 589999999999999999886532  2 35899999997553  2235689999


Q ss_pred             EecccccccCh-----HHHHHHHhhcccCCcEEEEEeC
Q psy2408         161 WFFESIFHMNH-----SAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       161 ~~~~~l~~~~~-----~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ++...-.+.+.     ..+++.+.+.|+|||.++....
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~  207 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE  207 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence            98543322222     1789999999999999877543

>KOG2940|consensus

Probab=99.25  E-value=2.3e-11  Score=95.43  Aligned_cols=170  Identities=18%  Similarity=0.202  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ...++.+.+.+..+  ....++|||||.|.+...+..+.-.+++-+|.|..|++.++..- +.++  .+...+.|-+.++
T Consensus        58 ig~rlaDrvfD~kk--~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DEE~Ld  132 (325)
T KOG2940|consen   58 IGDRLADRVFDCKK--SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDEEFLD  132 (325)
T ss_pred             HHHHHHHHHHHHhh--hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCce--EEEEEecchhccc
Confidence            34566666665543  33489999999999999988754458999999999999987552 2222  3567788888899


Q ss_pred             CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCC--hhHHHHHHHh----hcccCCCCcchHH
Q psy2408         152 FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKN--DNKFKEYVKK----NIHSNFILVEHYP  224 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~  224 (298)
                      +.++++|+|+++..+|++.+. ..+.+++..|||.|.++.+-+.-..-...  .-.+..+...    +....+....++-
T Consensus       133 f~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG  212 (325)
T KOG2940|consen  133 FKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIG  212 (325)
T ss_pred             ccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhh
Confidence            999999999999999999998 99999999999999987764442221000  0001111111    1122344467788


Q ss_pred             HHHHhCCCcEEEE--EeCCCCccc
Q psy2408         225 DLLNKSGFELIKI--DDITSHVMP  246 (298)
Q Consensus       225 ~~l~~~Gf~~~~~--~~~~~~~~~  246 (298)
                      .+|.++||....+  .++..++..
T Consensus       213 ~LL~rAGF~m~tvDtDEi~v~Yp~  236 (325)
T KOG2940|consen  213 NLLTRAGFSMLTVDTDEIVVGYPR  236 (325)
T ss_pred             hHHhhcCcccceecccceeecCch
Confidence            8999999986653  445555544

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.24  E-value=2e-10  Score=103.23  Aligned_cols=144  Identities=21%  Similarity=0.284  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-  150 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-  150 (298)
                      ....+...+.+.+.+.++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++...++ .+++++.+|+.+. 
T Consensus       276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l  353 (431)
T TIGR00479       276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVL  353 (431)
T ss_pred             HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHH
Confidence            45566777777777778889999999999999999984 56899999999999999999998887 4799999998653 


Q ss_pred             ---CCCCCCeeEEEecccccccC-hHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHH
Q psy2408         151 ---PFDNDSFDGGWFFESIFHMN-HSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDL  226 (298)
Q Consensus       151 ---~~~~~~fD~V~~~~~l~~~~-~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (298)
                         +..+++||+|++.-.=  .. ...+++.+.+ ++|++.+++++-.        ..+.               .=...
T Consensus       354 ~~~~~~~~~~D~vi~dPPr--~G~~~~~l~~l~~-l~~~~ivyvsc~p--------~tla---------------rd~~~  407 (431)
T TIGR00479       354 PKQPWAGQIPDVLLLDPPR--KGCAAEVLRTIIE-LKPERIVYVSCNP--------ATLA---------------RDLEF  407 (431)
T ss_pred             HHHHhcCCCCCEEEECcCC--CCCCHHHHHHHHh-cCCCEEEEEcCCH--------HHHH---------------HHHHH
Confidence               2334679999864331  11 1256665554 7898877775322        1111               11234


Q ss_pred             HHhCCCcEEEEEeCCCC
Q psy2408         227 LNKSGFELIKIDDITSH  243 (298)
Q Consensus       227 l~~~Gf~~~~~~~~~~~  243 (298)
                      |.+.||.+..+..+..-
T Consensus       408 l~~~gy~~~~~~~~DmF  424 (431)
T TIGR00479       408 LCKEGYGITWVQPVDMF  424 (431)
T ss_pred             HHHCCeeEEEEEEeccC
Confidence            66789988877765443

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.23  E-value=9.7e-11  Score=93.24  Aligned_cols=101  Identities=34%  Similarity=0.401  Sum_probs=81.1

Q ss_pred             eEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC---CCCCCCeeEEEecccc
Q psy2408          91 RFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL---PFDNDSFDGGWFFESI  166 (298)
Q Consensus        91 ~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~fD~V~~~~~l  166 (298)
                      .+||||||.|.++..+|.. ++..++|+|++...+..+..++...++ .|+.++++|+..+   -++++++|.|+..+.=
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD   98 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFPD   98 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence            8999999999999999987 578999999999999999999999888 5899999999883   2456899999876554


Q ss_pred             cccCh---------HHHHHHHhhcccCCcEEEEEe
Q psy2408         167 FHMNH---------SAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       167 ~~~~~---------~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      -+...         +.++..+.++|+|||.|.+.+
T Consensus        99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T  133 (195)
T PF02390_consen   99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT  133 (195)
T ss_dssp             ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence            43331         289999999999999998864

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.22  E-value=1.4e-10  Score=90.82  Aligned_cols=122  Identities=21%  Similarity=0.265  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHh------CCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcC--CCCceEE
Q psy2408          72 GSDKLSRIMINK------TSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEG--LLDKVNF  142 (298)
Q Consensus        72 ~~~~~~~~l~~~------~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~i~~  142 (298)
                      +..-+.+.+...      ....++.+|||+|||+|..++.++.. ...+|+..|.++ .++.++.++..++  ...++.+
T Consensus        23 aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v  101 (173)
T PF10294_consen   23 AALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSV  101 (173)
T ss_dssp             HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EE
T ss_pred             hHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccC
Confidence            445566666663      23457889999999999999999995 367999999999 9999999988765  4567888


Q ss_pred             EECCCCCCC----CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         143 LHGDALNLP----FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       143 ~~~d~~~~~----~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ...|-.+..    ....+||+|+++++++.-... .+++.+.++|+|+|.+++....
T Consensus       102 ~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~  158 (173)
T PF10294_consen  102 RPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR  158 (173)
T ss_dssp             EE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred             cEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence            887765421    234689999999999876555 9999999999999987776544

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=1.2e-09  Score=83.83  Aligned_cols=130  Identities=19%  Similarity=0.176  Sum_probs=92.7

Q ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec
Q psy2408          85 SITKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF  163 (298)
Q Consensus        85 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~  163 (298)
                      +.-.|.+|+|+|||||.+++..+. +| .+|+|+|+++++++.++++..+  +..++.|+++|+.++.   ..+|.|+++
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~-lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~---~~~dtvimN  115 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAAL-LGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR---GKFDTVIMN  115 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHh-cCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC---CccceEEEC
Confidence            334678999999999999988887 55 6999999999999999999988  3467999999999974   678888876


Q ss_pred             cccccc---ChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeC
Q psy2408         164 ESIFHM---NHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       164 ~~l~~~---~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  240 (298)
                      --+-..   .|..++..+.++.    ..+-+-.                      ..-+.+.+++....+|+.+......
T Consensus       116 PPFG~~~rhaDr~Fl~~Ale~s----~vVYsiH----------------------~a~~~~f~~~~~~~~G~~v~~~~~~  169 (198)
T COG2263         116 PPFGSQRRHADRPFLLKALEIS----DVVYSIH----------------------KAGSRDFVEKFAADLGGTVTHIERA  169 (198)
T ss_pred             CCCccccccCCHHHHHHHHHhh----heEEEee----------------------ccccHHHHHHHHHhcCCeEEEEEEE
Confidence            444322   2226666666653    1111111                      1114567788889999988876655


Q ss_pred             CCCccc
Q psy2408         241 TSHVMP  246 (298)
Q Consensus       241 ~~~~~~  246 (298)
                      ...+..
T Consensus       170 ~~~iP~  175 (198)
T COG2263         170 RFPIPR  175 (198)
T ss_pred             EEecCc
Confidence            554443

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.21  E-value=5.1e-10  Score=88.03  Aligned_cols=117  Identities=25%  Similarity=0.281  Sum_probs=87.6

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCe---------EEEEeCCHHHHHHHHHHHHhcCCCCceEEE
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCR---------VDGITISKFQQESAMKTAKAEGLLDKVNFL  143 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~---------v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~  143 (298)
                      ..++..|+....+.++..|||--||+|.+.+..+.. ....         +.|+|+++.+++.+++++...++...+.+.
T Consensus        14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~   93 (179)
T PF01170_consen   14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI   93 (179)
T ss_dssp             HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE
T ss_pred             HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE
Confidence            456777888888889999999999999999888775 2344         889999999999999999999998889999


Q ss_pred             ECCCCCCCCCCCCeeEEEecccccc-cC------hH--HHHHHHhhcccCCcEEEE
Q psy2408         144 HGDALNLPFDNDSFDGGWFFESIFH-MN------HS--AALNEARRVLKSGSILTL  190 (298)
Q Consensus       144 ~~d~~~~~~~~~~fD~V~~~~~l~~-~~------~~--~~l~~~~r~LkpgG~l~i  190 (298)
                      +.|+.++++.++++|.|+++--.-. +.      ..  .+++++.+++++...+++
T Consensus        94 ~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~  149 (179)
T PF01170_consen   94 QWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT  149 (179)
T ss_dssp             E--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred             ecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence            9999999877789999998644322 11      11  788999999999434333

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR00417 speE spermidine synthase

Probab=99.20  E-value=2e-10  Score=96.53  Aligned_cols=104  Identities=14%  Similarity=0.053  Sum_probs=79.6

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC--C-CCceEEEECCCCCC-CCCCCCeeEEEe
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEG--L-LDKVNFLHGDALNL-PFDNDSFDGGWF  162 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~--~-~~~i~~~~~d~~~~-~~~~~~fD~V~~  162 (298)
                      .+.+||+||||+|..+..+++.. ..+++++|+++.+++.+++.+...+  + .++++++..|.... ....++||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            44599999999999998888754 4589999999999999999876432  1 24688888887553 222478999998


Q ss_pred             cccccccC--h--H-HHHHHHhhcccCCcEEEEE
Q psy2408         163 FESIFHMN--H--S-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       163 ~~~l~~~~--~--~-~~l~~~~r~LkpgG~l~i~  191 (298)
                      .......+  .  . .+++.+.+.|+|||.+++.
T Consensus       152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            65422222  1  2 8899999999999999886

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PHA03412 putative methyltransferase; Provisional

Probab=99.19  E-value=6.8e-10  Score=89.34  Aligned_cols=93  Identities=12%  Similarity=0.230  Sum_probs=71.8

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK----GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF  163 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~  163 (298)
                      .+.+|||+|||+|.++..+++..    ..+|+++|+++.+++.|+++..      ++.+++.|+...++ +++||+|+++
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~-~~~FDlIIsN  121 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEF-DTLFDMAISN  121 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccc-cCCccEEEEC
Confidence            35699999999999999988752    4589999999999999997742      47899999987654 4689999986


Q ss_pred             cccccc----------C-h-H-HHHHHHhhcccCCcE
Q psy2408         164 ESIFHM----------N-H-S-AALNEARRVLKSGSI  187 (298)
Q Consensus       164 ~~l~~~----------~-~-~-~~l~~~~r~LkpgG~  187 (298)
                      --+.-.          . . . .++..+.+++++|+.
T Consensus       122 PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        122 PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            444311          1 1 2 688888896666664

>PLN02672 methionine S-methyltransferase

Probab=99.19  E-value=5.9e-10  Score=107.78  Aligned_cols=128  Identities=23%  Similarity=0.278  Sum_probs=91.9

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC---------------CCceEEEECCCCCCCC
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGL---------------LDKVNFLHGDALNLPF  152 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~---------------~~~i~~~~~d~~~~~~  152 (298)
                      +.+|||+|||+|.++..++... ..+|+++|+|+.+++.|+.++..+++               .++++++++|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            4689999999999999999874 47999999999999999999987543               2479999999876421


Q ss_pred             C-CCCeeEEEeccc--------------ccc--------------c------ChH-----HHHHHHhhcccCCcEEEEEe
Q psy2408         153 D-NDSFDGGWFFES--------------IFH--------------M------NHS-----AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       153 ~-~~~fD~V~~~~~--------------l~~--------------~------~~~-----~~l~~~~r~LkpgG~l~i~~  192 (298)
                      . ..+||+|+++-.              .+|              +      .+-     .++.++.++|+|||++++ +
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-E  277 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-N  277 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-E
Confidence            1 136999998311              111              0      111     677788889999998876 3


Q ss_pred             CCCCCCCCChhHHHHHHHhhcccCCCCcchHH-HHHHhCCCcEEEEEe
Q psy2408         193 LPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP-DLLNKSGFELIKIDD  239 (298)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gf~~~~~~~  239 (298)
                      +...                      ..+.+. +++++.||..+....
T Consensus       278 iG~~----------------------q~~~v~~~l~~~~gf~~~~~~~  303 (1082)
T PLN02672        278 MGGR----------------------PGQAVCERLFERRGFRITKLWQ  303 (1082)
T ss_pred             ECcc----------------------HHHHHHHHHHHHCCCCeeEEee
Confidence            3311                      112455 477777887766544

>KOG1499|consensus

Probab=99.18  E-value=1.8e-10  Score=96.61  Aligned_cols=111  Identities=21%  Similarity=0.283  Sum_probs=88.6

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD  158 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  158 (298)
                      .++..-.+-.+..|||+|||+|.++...|+....+|++||.|. +.+.|++.+..+++.+.++++.+.+.++.+|.+++|
T Consensus        51 ~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVD  129 (346)
T KOG1499|consen   51 AILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVD  129 (346)
T ss_pred             HHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCcccee
Confidence            3444444568899999999999999999995445899999876 459999999999999889999999998866678999


Q ss_pred             EEEecccccccCh--H--HHHHHHhhcccCCcEEEE
Q psy2408         159 GGWFFESIFHMNH--S--AALNEARRVLKSGSILTL  190 (298)
Q Consensus       159 ~V~~~~~l~~~~~--~--~~l~~~~r~LkpgG~l~i  190 (298)
                      +|++-++-+.+--  .  ..|-.=-+.|+|||.++=
T Consensus       130 iIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P  165 (346)
T KOG1499|consen  130 IIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP  165 (346)
T ss_pred             EEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence            9998766554432  2  555555689999998763

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.17  E-value=3.5e-10  Score=95.57  Aligned_cols=95  Identities=21%  Similarity=0.231  Sum_probs=78.9

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+.+.+++.+.+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+..++++++++|+.+.++ 
T Consensus        22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-   99 (294)
T PTZ00338         22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-   99 (294)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-
Confidence            467778888888889999999999999999999984 678999999999999999998876655689999999988764 


Q ss_pred             CCCeeEEEecccccccChH
Q psy2408         154 NDSFDGGWFFESIFHMNHS  172 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~  172 (298)
                       ..||.|+++-.. ++..+
T Consensus       100 -~~~d~VvaNlPY-~Istp  116 (294)
T PTZ00338        100 -PYFDVCVANVPY-QISSP  116 (294)
T ss_pred             -cccCEEEecCCc-ccCcH
Confidence             468988875443 34444

>KOG2904|consensus

Probab=99.16  E-value=5.1e-10  Score=90.30  Aligned_cols=121  Identities=19%  Similarity=0.227  Sum_probs=90.1

Q ss_pred             HHHHHHHHHhCC---CCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC
Q psy2408          74 DKLSRIMINKTS---ITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN  149 (298)
Q Consensus        74 ~~~~~~l~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~  149 (298)
                      +++++.+++.+.   ...+..+||+|||+|.++..++... .++++++|.|+.++..|.+++...++.+++.+++.+++.
T Consensus       131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~  210 (328)
T KOG2904|consen  131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES  210 (328)
T ss_pred             HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence            555555555443   2345689999999999999998874 679999999999999999999999999999998765543


Q ss_pred             -----CCCCCCCeeEEEecccccc--------------------------cChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         150 -----LPFDNDSFDGGWFFESIFH--------------------------MNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       150 -----~~~~~~~fD~V~~~~~l~~--------------------------~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                           .+.+.+++|+++++--.-.                          .... .++.-+.|.|+|||.+.+....
T Consensus       211 d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~  287 (328)
T KOG2904|consen  211 DASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE  287 (328)
T ss_pred             ccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence                 1345689999998422100                          0011 5667788999999998886543

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.16  E-value=3.3e-10  Score=94.63  Aligned_cols=88  Identities=23%  Similarity=0.238  Sum_probs=75.3

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      .++.+.+++.+++.++.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++..   .+++.++++|+.+++++
T Consensus        15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~~   90 (258)
T PRK14896         15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDLP   90 (258)
T ss_pred             HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCch
Confidence            567788888888888999999999999999999995 67999999999999999988754   24799999999988764


Q ss_pred             CCCeeEEEeccccc
Q psy2408         154 NDSFDGGWFFESIF  167 (298)
Q Consensus       154 ~~~fD~V~~~~~l~  167 (298)
                        .||.|+++-...
T Consensus        91 --~~d~Vv~NlPy~  102 (258)
T PRK14896         91 --EFNKVVSNLPYQ  102 (258)
T ss_pred             --hceEEEEcCCcc
Confidence              489998876643

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.15  E-value=5.9e-10  Score=94.78  Aligned_cols=149  Identities=18%  Similarity=0.160  Sum_probs=97.7

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEE-CCCCCCC----CCCCCeeEE
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAE-GLLDKVNFLH-GDALNLP----FDNDSFDGG  160 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~-~~~~~i~~~~-~d~~~~~----~~~~~fD~V  160 (298)
                      ++.+|||||||+|.+...++.. .+.+++|+|+++.+++.|++++... ++.+++.+.. .|...+.    .+.+.||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            4679999999999888877765 5789999999999999999999998 7888888864 3333321    245789999


Q ss_pred             EecccccccChH------HHHHHH----------------hhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh-----hc
Q psy2408         161 WFFESIFHMNHS------AALNEA----------------RRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK-----NI  213 (298)
Q Consensus       161 ~~~~~l~~~~~~------~~l~~~----------------~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-----~~  213 (298)
                      +|+=-++.....      .-.+++                ..++.+||.+.+.......       -..+...     ..
T Consensus       194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~e-------S~~~~~~~gwftsm  266 (321)
T PRK11727        194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEE-------SKAFAKQVLWFTSL  266 (321)
T ss_pred             EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHH-------HHHHHhhCcEEEEE
Confidence            998766543332      112222                2334466665444332111       1111111     11


Q ss_pred             ccCCCCcchHHHHHHhCCCcEEEEEeCCCC
Q psy2408         214 HSNFILVEHYPDLLNKSGFELIKIDDITSH  243 (298)
Q Consensus       214 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  243 (298)
                      ...--++..+...|++.|...+.+.++..+
T Consensus       267 v~kk~~l~~l~~~L~~~~~~~~~~~e~~qG  296 (321)
T PRK11727        267 VSKKENLPPLYRALKKVGAVEVKTIEMAQG  296 (321)
T ss_pred             eeccCCHHHHHHHHHHcCCceEEEEEEeCC
Confidence            223346788999999999977776666444

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.15  E-value=2.9e-10  Score=93.30  Aligned_cols=120  Identities=15%  Similarity=0.223  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC
Q psy2408          71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL  148 (298)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~  148 (298)
                      ....++...++...   ...+|||||+++|..+..++...  +++++.+|.+++..+.|++.+...|+.++|+++.+|+.
T Consensus        65 ~~~g~lL~~l~~~~---~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~  141 (247)
T PLN02589         65 ADEGQFLNMLLKLI---NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL  141 (247)
T ss_pred             HHHHHHHHHHHHHh---CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH
Confidence            34455555555554   45699999999999999999863  57999999999999999999999999999999999987


Q ss_pred             CC-C-C-----CCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         149 NL-P-F-----DNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       149 ~~-~-~-----~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      +. + +     ..++||+|+.-.-    +..  .++..+.+.|+|||.+++.+..+.+
T Consensus       142 e~L~~l~~~~~~~~~fD~iFiDad----K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G  195 (247)
T PLN02589        142 PVLDQMIEDGKYHGTFDFIFVDAD----KDNYINYHKRLIDLVKVGGVIGYDNTLWNG  195 (247)
T ss_pred             HHHHHHHhccccCCcccEEEecCC----HHHhHHHHHHHHHhcCCCeEEEEcCCCCCC
Confidence            63 2 1     1268999986432    444  8888999999999999887666554

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.14  E-value=7.5e-10  Score=82.78  Aligned_cols=147  Identities=19%  Similarity=0.122  Sum_probs=114.6

Q ss_pred             HHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CC
Q psy2408          35 VATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GC  112 (298)
Q Consensus        35 ~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~  112 (298)
                      ++.-|++. -.|+..+..+....|--..         ...-+++.|.....+..|.-|||+|.|||-++..+.++.  ..
T Consensus         5 ~~~~f~~e-~~F~k~wi~~PrtVGaI~P---------sSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~   74 (194)
T COG3963           5 LARKFDEE-ISFFKGWIDNPRTVGAILP---------SSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPE   74 (194)
T ss_pred             hhhhHHHH-HHHHHHHhcCCceeeeecC---------CcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCcc
Confidence            34445544 4555555555554443322         235567888888899999999999999999999999862  46


Q ss_pred             eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CCCCCeeEEEecccccccChH---HHHHHHhhcccC
Q psy2408         113 RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FDNDSFDGGWFFESIFHMNHS---AALNEARRVLKS  184 (298)
Q Consensus       113 ~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~Lkp  184 (298)
                      .+++++.|+++.....+.+.      .++++++|+.++.     +++..||.|+|.--+..++..   ++++.+...|.+
T Consensus        75 ~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~  148 (194)
T COG3963          75 SLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA  148 (194)
T ss_pred             ceEEEEeCHHHHHHHHHhCC------CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC
Confidence            89999999999999988864      3568999987763     567889999999999998876   999999999999


Q ss_pred             CcEEEEEeCCCCC
Q psy2408         185 GSILTLTDLPLLS  197 (298)
Q Consensus       185 gG~l~i~~~~~~~  197 (298)
                      ||.++...+...+
T Consensus       149 gg~lvqftYgp~s  161 (194)
T COG3963         149 GGPLVQFTYGPLS  161 (194)
T ss_pred             CCeEEEEEecCCC
Confidence            9999988777443

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.13  E-value=3.3e-10  Score=95.32  Aligned_cols=87  Identities=16%  Similarity=0.214  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+.+.+++.+.+.++.+|||+|||+|.++..+++. +.+|+++|+++.|++.+++++..    ++++++++|+.+++++
T Consensus        28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~  102 (272)
T PRK00274         28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLS  102 (272)
T ss_pred             HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHH
Confidence            346677888888888999999999999999999996 45999999999999999887642    4799999999998764


Q ss_pred             CCCeeEEEeccc
Q psy2408         154 NDSFDGGWFFES  165 (298)
Q Consensus       154 ~~~fD~V~~~~~  165 (298)
                      +-.+|.|+++-.
T Consensus       103 ~~~~~~vv~NlP  114 (272)
T PRK00274        103 ELQPLKVVANLP  114 (272)
T ss_pred             HcCcceEEEeCC
Confidence            322577777643

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.12  E-value=6.9e-10  Score=89.78  Aligned_cols=102  Identities=25%  Similarity=0.286  Sum_probs=86.8

Q ss_pred             CeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC---CCCCCCeeEEEeccc
Q psy2408          90 QRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL---PFDNDSFDGGWFFES  165 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~fD~V~~~~~  165 (298)
                      -.+||||||.|.....+|+. +...++|||+....+..|...+.+.++. |+.+++.|+..+   -+++++.|.|+.++.
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP  128 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP  128 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence            48999999999999999987 5678999999999999999999999985 899999999775   234569999988665


Q ss_pred             ccccCh---------HHHHHHHhhcccCCcEEEEEe
Q psy2408         166 IFHMNH---------SAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       166 l~~~~~---------~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      =-+-..         +.+++.+.++|+|||.|.+.+
T Consensus       129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT  164 (227)
T COG0220         129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT  164 (227)
T ss_pred             CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence            544332         289999999999999999874

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=99.11  E-value=1.1e-09  Score=86.25  Aligned_cols=118  Identities=17%  Similarity=0.212  Sum_probs=92.1

Q ss_pred             CeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC---CCCeeEEEecccc
Q psy2408          90 QRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD---NDSFDGGWFFESI  166 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~V~~~~~l  166 (298)
                      .++|||||=+.........  -..|+.+|+++                ..-.+.+.|+.+.|+|   .+.||+|+++.||
T Consensus        53 lrlLEVGals~~N~~s~~~--~fdvt~IDLns----------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL  114 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSG--WFDVTRIDLNS----------------QHPGILQQDFMERPLPKNESEKFDVISLSLVL  114 (219)
T ss_pred             ceEEeecccCCCCcccccC--ceeeEEeecCC----------------CCCCceeeccccCCCCCCcccceeEEEEEEEE
Confidence            6999999986554332211  23699999976                1245788899887764   6799999999999


Q ss_pred             cccChH----HHHHHHhhcccCCcE-----EEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEE
Q psy2408         167 FHMNHS----AALNEARRVLKSGSI-----LTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKI  237 (298)
Q Consensus       167 ~~~~~~----~~l~~~~r~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  237 (298)
                      .++|++    ..++.+++.|+|+|.     |++..+..               .....++.+.+.|..+++..||..+..
T Consensus       115 NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~---------------Cv~NSRy~~~~~l~~im~~LGf~~~~~  179 (219)
T PF11968_consen  115 NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP---------------CVTNSRYMTEERLREIMESLGFTRVKY  179 (219)
T ss_pred             eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch---------------HhhcccccCHHHHHHHHHhCCcEEEEE
Confidence            999988    999999999999999     77764431               123567888999999999999999887


Q ss_pred             EeC
Q psy2408         238 DDI  240 (298)
Q Consensus       238 ~~~  240 (298)
                      +..
T Consensus       180 ~~~  182 (219)
T PF11968_consen  180 KKS  182 (219)
T ss_pred             Eec
Confidence            653

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.10  E-value=2.6e-10  Score=89.88  Aligned_cols=142  Identities=23%  Similarity=0.268  Sum_probs=100.2

Q ss_pred             HhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEECCCCCC--CCCCCCe
Q psy2408          82 NKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGL-LDKVNFLHGDALNL--PFDNDSF  157 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~-~~~i~~~~~d~~~~--~~~~~~f  157 (298)
                      +..+++.|.+|||.+.|-|..++..++ .|+ +|+.++.++..++.|.-+-=..++ ...+.++.+|+.+.  .+++++|
T Consensus       128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~-rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf  206 (287)
T COG2521         128 ELVKVKRGERVLDTCTGLGYTAIEALE-RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF  206 (287)
T ss_pred             heeccccCCEeeeeccCccHHHHHHHH-cCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence            455567899999999999999999988 476 999999999998887654111111 13578999998775  5789999


Q ss_pred             eEEEecc---ccc-ccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCc
Q psy2408         158 DGGWFFE---SIF-HMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFE  233 (298)
Q Consensus       158 D~V~~~~---~l~-~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  233 (298)
                      |+|+---   ++. .+-...+.++++|+|+|||+++--.-++.....               ..--...+.+.|++.||.
T Consensus       207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr---------------G~d~~~gVa~RLr~vGF~  271 (287)
T COG2521         207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR---------------GLDLPKGVAERLRRVGFE  271 (287)
T ss_pred             ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc---------------cCChhHHHHHHHHhcCce
Confidence            9997321   111 111228999999999999998775444322111               111234677889999999


Q ss_pred             EEEEEe
Q psy2408         234 LIKIDD  239 (298)
Q Consensus       234 ~~~~~~  239 (298)
                      ++....
T Consensus       272 ~v~~~~  277 (287)
T COG2521         272 VVKKVR  277 (287)
T ss_pred             eeeeeh
Confidence            877543

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=99.10  E-value=1.2e-09  Score=97.38  Aligned_cols=120  Identities=20%  Similarity=0.225  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHhCCCC----CCCeEEEeCCCCCHHHHHHHHhc-----CCeEEEEeCCHHHHHHHHHHHHhcCCCCc
Q psy2408          69 FAQGSDKLSRIMINKTSIT----KGQRFIDIGCGFGLSGIRLAKAK-----GCRVDGITISKFQQESAMKTAKAEGLLDK  139 (298)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~----~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~  139 (298)
                      +..+.+.+...+.+.....    .+..|||+|||+|.++...++..     ..+|++|+-|+.+....+.++...++.++
T Consensus       163 Y~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~  242 (448)
T PF05185_consen  163 YDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDK  242 (448)
T ss_dssp             HHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTT
T ss_pred             HHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCe
Confidence            3444555555566655433    25789999999999988776642     25999999999999888888788889889


Q ss_pred             eEEEECCCCCCCCCCCCeeEEEecccccccCh---HHHHHHHhhcccCCcEEE
Q psy2408         140 VNFLHGDALNLPFDNDSFDGGWFFESIFHMNH---SAALNEARRVLKSGSILT  189 (298)
Q Consensus       140 i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~---~~~l~~~~r~LkpgG~l~  189 (298)
                      |+++++|+.++..| .++|+||+-..-....+   ++.|....|.|||+|.++
T Consensus       243 V~vi~~d~r~v~lp-ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  243 VTVIHGDMREVELP-EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEEEES-TTTSCHS-S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             EEEEeCcccCCCCC-CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            99999999999765 59999997433322222   288889999999998765

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=99.10  E-value=3.2e-10  Score=94.96  Aligned_cols=104  Identities=17%  Similarity=0.146  Sum_probs=80.6

Q ss_pred             CCeEEEeCCCCCHHHH----HHHHhc-----CCeEEEEeCCHHHHHHHHHHH------------------Hh--------
Q psy2408          89 GQRFIDIGCGFGLSGI----RLAKAK-----GCRVDGITISKFQQESAMKTA------------------KA--------  133 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~----~l~~~~-----~~~v~~vD~s~~~l~~a~~~~------------------~~--------  133 (298)
                      ..+|+..||++|.=..    .+.+..     ..+|+|+|+|+.+++.|++..                  ..        
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            4799999999995433    333321     257999999999999998751                  10        


Q ss_pred             ----cCCCCceEEEECCCCCCCCC-CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEe
Q psy2408         134 ----EGLLDKVNFLHGDALNLPFD-NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       134 ----~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~  192 (298)
                          ..+...|.|...|+.+.+++ .+.||+|+|..++.|+...   .+++++++.|+|||+|++..
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence                01235678999999875433 5789999999999999776   99999999999999988863

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.09  E-value=1.6e-09  Score=95.18  Aligned_cols=116  Identities=16%  Similarity=0.077  Sum_probs=84.3

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-C
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-F  152 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~  152 (298)
                      ..+...+.+.+...++.+|||+|||+|.++..++. .+.+|+|+|+++.+++.|+++++..++. +++++++|+.++. .
T Consensus       219 ~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~-~~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~  296 (374)
T TIGR02085       219 AQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAG-PDTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATA  296 (374)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhh-cCCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHh
Confidence            34444444444434567999999999999999997 5679999999999999999999988874 7999999997642 1


Q ss_pred             CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ..++||+|++.-.-..+ +..++..+. .++|++.+++++-
T Consensus       297 ~~~~~D~vi~DPPr~G~-~~~~l~~l~-~~~p~~ivyvsc~  335 (374)
T TIGR02085       297 QMSAPELVLVNPPRRGI-GKELCDYLS-QMAPKFILYSSCN  335 (374)
T ss_pred             cCCCCCEEEECCCCCCC-cHHHHHHHH-hcCCCeEEEEEeC
Confidence            12469999875332111 114555554 4789988888753

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG2915|consensus

Probab=99.08  E-value=4e-09  Score=85.13  Aligned_cols=109  Identities=19%  Similarity=0.265  Sum_probs=94.0

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC-
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD-  153 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-  153 (298)
                      ...|+..+.+.||.+|||-|+|+|.++..+++..  -.+++.+|+.....+.|.+.+++.++++++++.+.|+....|. 
T Consensus        94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~  173 (314)
T KOG2915|consen   94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI  173 (314)
T ss_pred             HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence            4567888899999999999999999999999974  3699999999999999999999999999999999999886443 


Q ss_pred             -CCCeeEEEecccccccChH-HHHHHHhhcccCCc-EEEE
Q psy2408         154 -NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGS-ILTL  190 (298)
Q Consensus       154 -~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG-~l~i  190 (298)
                       +..+|.|+.     -++.| .++..+..+||.+| +++-
T Consensus       174 ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~cs  208 (314)
T KOG2915|consen  174 KSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCS  208 (314)
T ss_pred             cccccceEEE-----cCCChhhhhhhhHHHhhhcCceEEe
Confidence             567888754     67888 99999999999887 4443

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.07  E-value=1.1e-09  Score=95.07  Aligned_cols=106  Identities=23%  Similarity=0.247  Sum_probs=86.7

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCC----CCCCCCeeEEE
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGDALNL----PFDNDSFDGGW  161 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d~~~~----~~~~~~fD~V~  161 (298)
                      .|.+||++-|=||.++.+.+. .|+ +||+||+|...++.|+++++.++++ .++.++++|+.++    .-...+||+|+
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~-gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi  295 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAAL-GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII  295 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHh-cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence            389999999999999999998 677 9999999999999999999999985 4589999999875    12245999999


Q ss_pred             ec---------ccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         162 FF---------ESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       162 ~~---------~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +-         ....-..+. .++..+.++|+|||.++++...
T Consensus       296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~  338 (393)
T COG1092         296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS  338 (393)
T ss_pred             ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            72         111122333 8999999999999999987544

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=99.06  E-value=3.1e-09  Score=87.94  Aligned_cols=124  Identities=19%  Similarity=0.190  Sum_probs=89.0

Q ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCH----HHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHh---
Q psy2408          67 DNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGL----SGIRLAKAK------GCRVDGITISKFQQESAMKTAKA---  133 (298)
Q Consensus        67 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~----~~~~l~~~~------~~~v~~vD~s~~~l~~a~~~~~~---  133 (298)
                      ..+..-...+...++..... ...+|+.+||+||.    +++.+.+..      ..+++|.|+|...++.|+.-.=.   
T Consensus        76 ~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~  154 (268)
T COG1352          76 EHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRE  154 (268)
T ss_pred             HHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhH
Confidence            33433444444444443322 46799999999994    344444433      36899999999999999863111   


Q ss_pred             --cCC-----------------------CCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhcccCC
Q psy2408         134 --EGL-----------------------LDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSG  185 (298)
Q Consensus       134 --~~~-----------------------~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~Lkpg  185 (298)
                        .++                       ..+|.|...|+..-++..+.||+|+|..|+-++..+   .+++.++..|+||
T Consensus       155 ~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~g  234 (268)
T COG1352         155 LLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPG  234 (268)
T ss_pred             hhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCC
Confidence              121                       235778888887655345789999999999999887   9999999999999


Q ss_pred             cEEEEE
Q psy2408         186 SILTLT  191 (298)
Q Consensus       186 G~l~i~  191 (298)
                      |.|++.
T Consensus       235 G~LflG  240 (268)
T COG1352         235 GLLFLG  240 (268)
T ss_pred             CEEEEc
Confidence            999996

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=99.05  E-value=2.3e-10  Score=100.28  Aligned_cols=118  Identities=20%  Similarity=0.302  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHhCCC--C--CCCeEEEeCCCCCHHHHHHHHhcCCeEEEE---eCCHHHHHHHHHHHHhcCCCCceEEEE
Q psy2408          72 GSDKLSRIMINKTSI--T--KGQRFIDIGCGFGLSGIRLAKAKGCRVDGI---TISKFQQESAMKTAKAEGLLDKVNFLH  144 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~--~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~~v---D~s~~~l~~a~~~~~~~~~~~~i~~~~  144 (298)
                      ......+.|.+.+..  .  .-..+||+|||+|.++.+|..+ +..+..+   |..+.+++.|.++    |++..+.  .
T Consensus        97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~--~  169 (506)
T PF03141_consen   97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER----GVPAMIG--V  169 (506)
T ss_pred             CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc----Ccchhhh--h
Confidence            344445555555443  2  2247899999999999999883 4333333   3344555555544    5543222  2


Q ss_pred             CCCCCCCCCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         145 GDALNLPFDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       145 ~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      ..-..+|++++.||+|.|+.++-.....  -+|-++.|+|+|||+++++.+...
T Consensus       170 ~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  170 LGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             hccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence            2346789999999999999888766555  899999999999999999877654

; GO: 0008168 methyltransferase activity

>KOG3178|consensus

Probab=99.04  E-value=1.8e-08  Score=84.91  Aligned_cols=147  Identities=16%  Similarity=0.170  Sum_probs=108.0

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccc
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFH  168 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~  168 (298)
                      -...+|+|.|.|..+..+...+ .++-++++....+..+..... .|    |..+-+|+..- .|.  -|+|++.++++|
T Consensus       178 v~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P~--~daI~mkWiLhd  248 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TPK--GDAIWMKWILHD  248 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CCC--cCeEEEEeeccc
Confidence            3789999999999999999854 468899999888887777664 33    67788888664 343  469999999999


Q ss_pred             cChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChh-------HHHHHHHh-hcccCCCCcchHHHHHHhCCCcEEEE
Q psy2408         169 MNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDN-------KFKEYVKK-NIHSNFILVEHYPDLLNKSGFELIKI  237 (298)
Q Consensus       169 ~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~  237 (298)
                      +.|.   ++|++++..|+|||.+++.+...+.......       ....+... .....-.+..++..++.++||.+..+
T Consensus       249 wtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~  328 (342)
T KOG3178|consen  249 WTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMV  328 (342)
T ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEE
Confidence            9998   9999999999999999999886553111010       00111000 11133457889999999999998887


Q ss_pred             EeCCCCc
Q psy2408         238 DDITSHV  244 (298)
Q Consensus       238 ~~~~~~~  244 (298)
                      ...+..+
T Consensus       329 ~~~~~~~  335 (342)
T KOG3178|consen  329 ALTAYSY  335 (342)
T ss_pred             EeccCcc
Confidence            7655543

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.02  E-value=5.4e-09  Score=82.93  Aligned_cols=119  Identities=11%  Similarity=0.095  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHhCC-CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-
Q psy2408          73 SDKLSRIMINKTS-ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-  150 (298)
Q Consensus        73 ~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-  150 (298)
                      ..++...+...+. .-.+.+|||++||+|.++..++.+...+|+++|.++.+++.++++++..++.++++++++|+.+. 
T Consensus        33 ~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l  112 (189)
T TIGR00095        33 TRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRAL  112 (189)
T ss_pred             hHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHH
Confidence            3444444444442 13578999999999999999999533489999999999999999999888876799999999553 


Q ss_pred             C-C-CCC-CeeEEEecccccccChH-HHHHHH--hhcccCCcEEEEEe
Q psy2408         151 P-F-DND-SFDGGWFFESIFHMNHS-AALNEA--RRVLKSGSILTLTD  192 (298)
Q Consensus       151 ~-~-~~~-~fD~V~~~~~l~~~~~~-~~l~~~--~r~LkpgG~l~i~~  192 (298)
                      . + ... .||+|+..-.... ... .++..+  ..+|+++|.+++..
T Consensus       113 ~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~  159 (189)
T TIGR00095       113 KFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEE  159 (189)
T ss_pred             HHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            1 1 122 4787776443322 222 444444  34788888776643

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.99  E-value=5.7e-09  Score=87.04  Aligned_cols=85  Identities=20%  Similarity=0.288  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+.+.+++.+...++.+|||+|||+|.++..+++. +..++++|+++.+++.+++.+..   ..++.++++|+.+++++
T Consensus        15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~   90 (253)
T TIGR00755        15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP   90 (253)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh
Confidence            456778888888888999999999999999999985 46799999999999999987643   35799999999988764


Q ss_pred             CCCee---EEEecc
Q psy2408         154 NDSFD---GGWFFE  164 (298)
Q Consensus       154 ~~~fD---~V~~~~  164 (298)
                        ++|   +|+++-
T Consensus        91 --~~d~~~~vvsNl  102 (253)
T TIGR00755        91 --DFPKQLKVVSNL  102 (253)
T ss_pred             --HcCCcceEEEcC
Confidence              466   666543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.99  E-value=2.5e-09  Score=86.80  Aligned_cols=146  Identities=17%  Similarity=0.121  Sum_probs=85.4

Q ss_pred             HHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCce-EEEECCCCCC----
Q psy2408          77 SRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKV-NFLHGDALNL----  150 (298)
Q Consensus        77 ~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i-~~~~~d~~~~----  150 (298)
                      ...+++..++ .++.+|||+|||+|.++..+++....+|+++|+++.|+....+.  .    .++ .+...|+..+    
T Consensus        63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~--~----~~v~~~~~~ni~~~~~~~  136 (228)
T TIGR00478        63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ--D----ERVKVLERTNIRYVTPAD  136 (228)
T ss_pred             HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc--C----CCeeEeecCCcccCCHhH
Confidence            3345555554 36789999999999999999995335899999999888762211  1    122 2333344322    


Q ss_pred             -CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcc----cCCCCcchHHH
Q psy2408         151 -PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIH----SNFILVEHYPD  225 (298)
Q Consensus       151 -~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  225 (298)
                       +..-..+|+++++..+       .+..+.++|+| |.+++..-+......  .   ........    .+......+..
T Consensus       137 ~~~d~~~~DvsfiS~~~-------~l~~i~~~l~~-~~~~~L~KPqFE~~~--~---~~~~~giv~~~~~~~~~~~~~~~  203 (228)
T TIGR00478       137 IFPDFATFDVSFISLIS-------ILPELDLLLNP-NDLTLLFKPQFEAGR--E---KKNKKGVVRDKEAIALALHKVID  203 (228)
T ss_pred             cCCCceeeeEEEeehHh-------HHHHHHHHhCc-CeEEEEcChHhhhcH--h---hcCcCCeecCHHHHHHHHHHHHH
Confidence             1112367877766554       67889999999 776654322111000  0   00000000    01122456677


Q ss_pred             HHHhCCCcEEEEEeCC
Q psy2408         226 LLNKSGFELIKIDDIT  241 (298)
Q Consensus       226 ~l~~~Gf~~~~~~~~~  241 (298)
                      .+.+.||.+......+
T Consensus       204 ~~~~~~~~~~~~~~s~  219 (228)
T TIGR00478       204 KGESPDFQEKKIIFSL  219 (228)
T ss_pred             HHHcCCCeEeeEEECC
Confidence            7888999988766543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG1500|consensus

Probab=98.98  E-value=4.6e-09  Score=87.15  Aligned_cols=109  Identities=17%  Similarity=0.203  Sum_probs=85.0

Q ss_pred             HHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeE
Q psy2408          80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDG  159 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  159 (298)
                      +++...--.+..|||+|||+|.++...++....+|++|+.| +|.+.|+..++.+.+.++|.++.+.++++.+| ++.|+
T Consensus       169 il~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~Dv  246 (517)
T KOG1500|consen  169 ILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDV  246 (517)
T ss_pred             HHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccE
Confidence            34433334678999999999999999988544689999975 59999999999999999999999999998876 78999


Q ss_pred             EEecccccccChH---HHHHHHhhcccCCcEEEE
Q psy2408         160 GWFFESIFHMNHS---AALNEARRVLKSGSILTL  190 (298)
Q Consensus       160 V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i  190 (298)
                      +++--+-.-+-+.   +..-.+++.|+|.|..+-
T Consensus       247 iISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  247 IISEPMGYMLVNERMLESYLHARKWLKPNGKMFP  280 (517)
T ss_pred             EEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence            9874333333232   444456799999998653

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.98  E-value=4.8e-10  Score=91.97  Aligned_cols=144  Identities=20%  Similarity=0.161  Sum_probs=91.6

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC----------------C-----------Cce
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL----------------L-----------DKV  140 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~----------------~-----------~~i  140 (298)
                      .|.++||||||+-.....-+...-.+++..|.++...+..+.-+.+.+-                .           ..|
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V  135 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV  135 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence            5779999999995443222222234799999999988866665443221                0           012


Q ss_pred             -EEEECCCCCC-CCCC-----CCeeEEEecccccccC-hH----HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHH
Q psy2408         141 -NFLHGDALNL-PFDN-----DSFDGGWFFESIFHMN-HS----AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEY  208 (298)
Q Consensus       141 -~~~~~d~~~~-~~~~-----~~fD~V~~~~~l~~~~-~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~  208 (298)
                       .++..|+.+. |+..     .+||+|++..+++... +.    .+++++.++|||||.|++..........       .
T Consensus       136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~-------v  208 (256)
T PF01234_consen  136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYM-------V  208 (256)
T ss_dssp             EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEE-------E
T ss_pred             ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEE-------E
Confidence             3777898875 3322     3599999999998764 33    9999999999999999998664322111       1


Q ss_pred             HHhhcccCCCCcchHHHHHHhCCCcEEEEE
Q psy2408         209 VKKNIHSNFILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                      ..........+.+.+++.|+++||.+++.+
T Consensus       209 G~~~F~~l~l~ee~v~~al~~aG~~i~~~~  238 (256)
T PF01234_consen  209 GGHKFPCLPLNEEFVREALEEAGFDIEDLE  238 (256)
T ss_dssp             TTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred             CCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence            111233446778899999999999998877

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.98  E-value=6.1e-08  Score=80.13  Aligned_cols=144  Identities=22%  Similarity=0.170  Sum_probs=101.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh---cC-----------------------------
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA---EG-----------------------------  135 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~---~~-----------------------------  135 (298)
                      ...+||--|||.|+++..+|. .|..+.|.|.|--|+-..+-.+..   .+                             
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~-~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv  134 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAK-LGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV  134 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhh-ccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence            457999999999999999999 588999999999987655443221   00                             


Q ss_pred             -------CCCceEEEECCCCCCCCCC---CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhH
Q psy2408         136 -------LLDKVNFLHGDALNLPFDN---DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNK  204 (298)
Q Consensus       136 -------~~~~i~~~~~d~~~~~~~~---~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~  204 (298)
                             .+.+++...+|+.++..++   ++||+|+.++.+...++. ..+..+.++|||||..+=..+-.-+..+  . 
T Consensus       135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~--~-  211 (270)
T PF07942_consen  135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEP--M-  211 (270)
T ss_pred             CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCC--C-
Confidence                   1135667778887763333   799999999888887888 9999999999999955433222111111  0 


Q ss_pred             HHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEe
Q psy2408         205 FKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDD  239 (298)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  239 (298)
                          .......--++.+++..++++.||+++..+.
T Consensus       212 ----~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  212 ----SIPNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             ----CCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence                0000011235789999999999999987655

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.97  E-value=5.6e-09  Score=88.89  Aligned_cols=147  Identities=13%  Similarity=0.059  Sum_probs=101.4

Q ss_pred             HhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-----
Q psy2408          36 ATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-----  110 (298)
Q Consensus        36 ~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----  110 (298)
                      +=+||..+...|+.+...+.   |+....+    ....++....|...+  .++..++|+|||+|.-+..|.+..     
T Consensus        33 k~~YD~~Gs~LFe~It~lpE---YYptr~E----~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~  103 (319)
T TIGR03439        33 LLLYDDEGLKLFEEITYSPE---YYLTNDE----IEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKK  103 (319)
T ss_pred             HhhhcchHHHHHHHHHcCCc---cCChHHH----HHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCC
Confidence            45788776777887754432   3333111    122344555566655  467799999999999877776643     


Q ss_pred             CCeEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCC----CC--CCCCeeEEEec-ccccccChH---HHHHHHh
Q psy2408         111 GCRVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGDALNL----PF--DNDSFDGGWFF-ESIFHMNHS---AALNEAR  179 (298)
Q Consensus       111 ~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d~~~~----~~--~~~~fD~V~~~-~~l~~~~~~---~~l~~~~  179 (298)
                      ..+++++|+|.++++.+.+.+.....+ -.+.-+++|+.+.    +-  ..+...+++.. .++.+++..   .+|++++
T Consensus       104 ~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~  183 (319)
T TIGR03439       104 SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFL  183 (319)
T ss_pred             CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHH
Confidence            367999999999999999998833332 2344488888652    21  12345677655 488888876   9999999


Q ss_pred             h-cccCCcEEEEE
Q psy2408         180 R-VLKSGSILTLT  191 (298)
Q Consensus       180 r-~LkpgG~l~i~  191 (298)
                      + .|+|||.++|.
T Consensus       184 ~~~l~~~d~lLiG  196 (319)
T TIGR03439       184 ATALSPSDSFLIG  196 (319)
T ss_pred             HhhCCCCCEEEEe
Confidence            9 99999999885

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG1661|consensus

Probab=98.93  E-value=8.8e-09  Score=80.07  Aligned_cols=102  Identities=21%  Similarity=0.213  Sum_probs=81.4

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhcCC---------CCceEEEECCCCCCCCC
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAK---GCRVDGITISKFQQESAMKTAKAEGL---------LDKVNFLHGDALNLPFD  153 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~l~~a~~~~~~~~~---------~~~i~~~~~d~~~~~~~  153 (298)
                      +.||.+.||+|+|+|.++..++...   |...+|+|.-++.++.+++++...--         ..++.++.+|......+
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e  159 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE  159 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence            4799999999999999999888753   33458999999999999998765431         24678999999987556


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ..+||.|++-....     ...+++...|+|||++++-.
T Consensus       160 ~a~YDaIhvGAaa~-----~~pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  160 QAPYDAIHVGAAAS-----ELPQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             cCCcceEEEccCcc-----ccHHHHHHhhccCCeEEEee
Confidence            78999998763322     66778889999999999853

>PLN02823 spermine synthase

Probab=98.92  E-value=1.6e-08  Score=86.89  Aligned_cols=104  Identities=13%  Similarity=0.080  Sum_probs=80.2

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC---CCCceEEEECCCCCC-CCCCCCeeEEEe
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEG---LLDKVNFLHGDALNL-PFDNDSFDGGWF  162 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~---~~~~i~~~~~d~~~~-~~~~~~fD~V~~  162 (298)
                      .+.+||.||+|.|..+..+.+.. ..++++||+++.+++.|++.+...+   -+++++++.+|+... ....++||+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            45799999999999999888854 4589999999999999999876421   146899999998774 333578999997


Q ss_pred             cccc-------cccChHHHHH-HHhhcccCCcEEEEE
Q psy2408         163 FESI-------FHMNHSAALN-EARRVLKSGSILTLT  191 (298)
Q Consensus       163 ~~~l-------~~~~~~~~l~-~~~r~LkpgG~l~i~  191 (298)
                      -..-       .++-...+++ .+.+.|+|||.+++.
T Consensus       183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            5321       1111227888 899999999998775

>PRK04148 hypothetical protein; Provisional

Probab=98.91  E-value=1.7e-08  Score=74.14  Aligned_cols=106  Identities=17%  Similarity=0.170  Sum_probs=73.9

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCH-HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC-
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGL-SGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD-  153 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-  153 (298)
                      +.+.+.+.+....+.+|||||||+|. .+..|++ .|..|+++|+++..++.+++.        .++++..|+.+.++. 
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~-~G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~   74 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKE-SGFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI   74 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHH-CCCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH
Confidence            45566666655567899999999996 7878886 689999999999988888765        268999999886432 


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhccc-CCcEEEEEeCCC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLK-SGSILTLTDLPL  195 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lk-pgG~l~i~~~~~  195 (298)
                      -+.+|+|++...-     +++..-+.++-+ -|.-++|.....
T Consensus        75 y~~a~liysirpp-----~el~~~~~~la~~~~~~~~i~~l~~  112 (134)
T PRK04148         75 YKNAKLIYSIRPP-----RDLQPFILELAKKINVPLIIKPLSG  112 (134)
T ss_pred             HhcCCEEEEeCCC-----HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            3678998875432     133333333332 345667765543

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.91  E-value=2.2e-09  Score=84.52  Aligned_cols=125  Identities=17%  Similarity=0.200  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHhCCCC--CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC
Q psy2408          70 AQGSDKLSRIMINKTSIT--KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA  147 (298)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~  147 (298)
                      ++..+++.+.+.+.+...  ++.+|||+-||+|.++.....+...+|+.||.++..+..++++++..+..+++.++..|+
T Consensus        22 RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~  101 (183)
T PF03602_consen   22 RPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDA  101 (183)
T ss_dssp             -SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSH
T ss_pred             CCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCH
Confidence            344456666666666542  788999999999999999888544599999999999999999999988877799999996


Q ss_pred             CCC-C---CCCCCeeEEEecccccccCh-HHHHHHHh--hcccCCcEEEEEeCC
Q psy2408         148 LNL-P---FDNDSFDGGWFFESIFHMNH-SAALNEAR--RVLKSGSILTLTDLP  194 (298)
Q Consensus       148 ~~~-~---~~~~~fD~V~~~~~l~~~~~-~~~l~~~~--r~LkpgG~l~i~~~~  194 (298)
                      ... .   ....+||+|++.--...-.. ..++..+.  .+|+++|.+++-...
T Consensus       102 ~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~  155 (183)
T PF03602_consen  102 FKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSK  155 (183)
T ss_dssp             HHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred             HHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence            542 1   13689999988544332222 25666665  789999988885443

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.90  E-value=6.5e-09  Score=82.56  Aligned_cols=103  Identities=22%  Similarity=0.303  Sum_probs=77.2

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCe
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSF  157 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  157 (298)
                      .+.+.  ..++.+|||+.||.|.++..+++. .+..|+++|++|..++.+++++..+++.+++..+++|..++.. .+.+
T Consensus        94 Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~  170 (200)
T PF02475_consen   94 RIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKF  170 (200)
T ss_dssp             HHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-E
T ss_pred             HHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-cccc
Confidence            44444  468999999999999999999984 3568999999999999999999999999899999999998753 6899


Q ss_pred             eEEEecccccccChH--HHHHHHhhcccCCcEEE
Q psy2408         158 DGGWFFESIFHMNHS--AALNEARRVLKSGSILT  189 (298)
Q Consensus       158 D~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~  189 (298)
                      |.|++..     |..  .+|..+.+++++||.+.
T Consensus       171 drvim~l-----p~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  171 DRVIMNL-----PESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             EEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred             CEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence            9887643     322  78888999999998764

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.89  E-value=4e-09  Score=86.35  Aligned_cols=190  Identities=14%  Similarity=0.165  Sum_probs=103.8

Q ss_pred             ccccccccCCceeEeeccC--------CCCCCcHHHHHHHHHHHHHHhCCCC-CCCeEEEeCCCC--CHHHHHHHHh--c
Q psy2408          44 GQIGSVLFGGHMHWGYWDE--------SNSKDNFAQGSDKLSRIMINKTSIT-KGQRFIDIGCGF--GLSGIRLAKA--K  110 (298)
Q Consensus        44 ~~~y~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~vLDiGcG~--G~~~~~l~~~--~  110 (298)
                      +.+|+.++|+..|+..=..        ......+....+......++.+--. .-...||||||-  ......+++.  +
T Consensus        15 ARvYDy~LGGkdnf~vDR~~a~~~~~~~P~~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P   94 (267)
T PF04672_consen   15 ARVYDYLLGGKDNFAVDREAAERLLAAAPEIREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAP   94 (267)
T ss_dssp             HHHHHHHCT-SS--HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-T
T ss_pred             HHHHHHHhCCccCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCC
Confidence            5667777777666531100        0011223333444444445554333 336899999994  4556677765  5


Q ss_pred             CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----------CCCCCeeEEEecccccccChH----HHH
Q psy2408         111 GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----------FDNDSFDGGWFFESIFHMNHS----AAL  175 (298)
Q Consensus       111 ~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~~~~fD~V~~~~~l~~~~~~----~~l  175 (298)
                      .++|+.||.++-.+..++..+....- ....++.+|+.+..           +.-+..=.|++..+++|+++.    .++
T Consensus        95 ~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv  173 (267)
T PF04672_consen   95 DARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIV  173 (267)
T ss_dssp             T-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHH
T ss_pred             CceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHH
Confidence            78999999999999999998875421 23889999998731           111233367888999999773    999


Q ss_pred             HHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHH-hhcccCCCCcchHHHHHHhCCCcEEE
Q psy2408         176 NEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVK-KNIHSNFILVEHYPDLLNKSGFELIK  236 (298)
Q Consensus       176 ~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~  236 (298)
                      +.++..|.||.+|+|+.................+. ......+.+.+++..+|.  ||++++
T Consensus       174 ~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~--g~elve  233 (267)
T PF04672_consen  174 ARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD--GLELVE  233 (267)
T ss_dssp             HHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT--TSEE-T
T ss_pred             HHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC--CCccCC
Confidence            99999999999999987764322110111222222 233345678888888887  887764

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.89  E-value=1.5e-08  Score=88.87  Aligned_cols=99  Identities=25%  Similarity=0.254  Sum_probs=81.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      ++.+|||++||+|..++.++...+ .+|+++|+++.+++.++++++.+++. ++.+.+.|+..+....+.||+|++.- .
T Consensus        57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP-~  134 (382)
T PRK04338         57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDP-F  134 (382)
T ss_pred             CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECC-C
Confidence            346899999999999999988654 48999999999999999999988875 47789999876421146799998743 2


Q ss_pred             cccChH-HHHHHHhhcccCCcEEEEE
Q psy2408         167 FHMNHS-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       167 ~~~~~~-~~l~~~~r~LkpgG~l~i~  191 (298)
                         ..+ .++..+.+.+++||.++++
T Consensus       135 ---Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        135 ---GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             ---CCcHHHHHHHHHHhcCCCEEEEE
Confidence               445 8888878889999999998

>KOG0820|consensus

Probab=98.88  E-value=2.2e-08  Score=81.01  Aligned_cols=90  Identities=20%  Similarity=0.264  Sum_probs=78.4

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ....+.|++...+++++.|||+|.|||.++..+.+ .+.+|+++++++.|+....+++..-......+++.+|+.+.++|
T Consensus        44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe-~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P  122 (315)
T KOG0820|consen   44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLE-AGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP  122 (315)
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHH-hcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence            45678889999999999999999999999999999 68999999999999999999988665557899999999988654


Q ss_pred             CCCeeEEEecccc
Q psy2408         154 NDSFDGGWFFESI  166 (298)
Q Consensus       154 ~~~fD~V~~~~~l  166 (298)
                        .||.++++--.
T Consensus       123 --~fd~cVsNlPy  133 (315)
T KOG0820|consen  123 --RFDGCVSNLPY  133 (315)
T ss_pred             --ccceeeccCCc
Confidence              69999875433

>KOG1663|consensus

Probab=98.88  E-value=4.3e-08  Score=77.66  Aligned_cols=115  Identities=21%  Similarity=0.314  Sum_probs=94.7

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC---
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL---  150 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~---  150 (298)
                      +...+++..   .++++||||.=||..+..+|...  +++|+++|+++...+.+.+..+.+|+..+|+++++++.+.   
T Consensus        64 fl~~li~~~---~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~  140 (237)
T KOG1663|consen   64 FLQMLIRLL---NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDE  140 (237)
T ss_pred             HHHHHHHHh---CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHH
Confidence            344444443   56799999999999999998873  6899999999999999999999999999999999988663   


Q ss_pred             ---CCCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         151 ---PFDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       151 ---~~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                         ..+.++||++|    +.+.++.  ....++.+++|+||.|++....+.+
T Consensus       141 l~~~~~~~tfDfaF----vDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G  188 (237)
T KOG1663|consen  141 LLADGESGTFDFAF----VDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPG  188 (237)
T ss_pred             HHhcCCCCceeEEE----EccchHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence               23468999997    4556665  8999999999999999998766555

>KOG1331|consensus

Probab=98.87  E-value=1.7e-09  Score=88.20  Aligned_cols=109  Identities=28%  Similarity=0.369  Sum_probs=88.1

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS  156 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  156 (298)
                      ++.+++..  +.+..++|+|||.|....   ..+.+.++|+|++...+.-+++.       +......+|+.++|+++.+
T Consensus        36 v~qfl~~~--~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s  103 (293)
T KOG1331|consen   36 VRQFLDSQ--PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREES  103 (293)
T ss_pred             HHHHHhcc--CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCc
Confidence            55666665  458899999999986532   22567899999999888777644       1126788999999999999


Q ss_pred             eeEEEecccccccChH----HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         157 FDGGWFFESIFHMNHS----AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~----~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      ||.+++..+++|+...    .+++++.|+|+|||..++..+....
T Consensus       104 ~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q  148 (293)
T KOG1331|consen  104 FDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQ  148 (293)
T ss_pred             cccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence            9999999999999876    9999999999999998887665443

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.86  E-value=2.9e-08  Score=89.05  Aligned_cols=112  Identities=16%  Similarity=0.113  Sum_probs=88.6

Q ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-CCCCCeeEEE
Q psy2408          85 SITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-FDNDSFDGGW  161 (298)
Q Consensus        85 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~  161 (298)
                      .+.++.+|||++||.|.-+..++...  ...++++|+++..+..++++++..|+. ++.+.+.|...++ ...+.||.|+
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~IL  188 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAIL  188 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEE
Confidence            66799999999999999999999875  358999999999999999999999984 6888999987652 2236799999


Q ss_pred             e----c--ccccccC---------------h-H-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         162 F----F--ESIFHMN---------------H-S-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       162 ~----~--~~l~~~~---------------~-~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      +    +  +++..-+               . . .+|.++.++|||||+|+-++.....
T Consensus       189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~  247 (470)
T PRK11933        189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR  247 (470)
T ss_pred             EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence            4    2  2222111               1 1 7899999999999999887666433

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=2.5e-08  Score=81.73  Aligned_cols=94  Identities=19%  Similarity=0.270  Sum_probs=77.9

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ....+.+++...+.++.+|||||+|.|.++..|++ .+.+|+++++++.+++..++.+.   ..++++++++|+.+.+++
T Consensus        16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~-~~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~   91 (259)
T COG0030          16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLE-RAARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFP   91 (259)
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHh-hcCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcch
Confidence            45688899999999999999999999999999999 57789999999999999998875   235799999999998876


Q ss_pred             CC-CeeEEEecccccccChH
Q psy2408         154 ND-SFDGGWFFESIFHMNHS  172 (298)
Q Consensus       154 ~~-~fD~V~~~~~l~~~~~~  172 (298)
                      .- .++.|+++--. ++..+
T Consensus        92 ~l~~~~~vVaNlPY-~Issp  110 (259)
T COG0030          92 SLAQPYKVVANLPY-NISSP  110 (259)
T ss_pred             hhcCCCEEEEcCCC-cccHH
Confidence            42 67888775443 44444

>KOG3191|consensus

Probab=98.85  E-value=2.5e-07  Score=70.46  Aligned_cols=124  Identities=19%  Similarity=0.258  Sum_probs=92.1

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      ..-+||||||+|..+..+++..  +..+.++|+++.+++..++.+..++.  ++..++.|+..- +..++.|+++.+-..
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~-l~~~~VDvLvfNPPY  120 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSG-LRNESVDVLVFNPPY  120 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhh-hccCCccEEEECCCc
Confidence            5689999999999999999874  46899999999999999999887775  478899998763 334889988864221


Q ss_pred             c---------------cc--Ch----H-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHH
Q psy2408         167 F---------------HM--NH----S-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP  224 (298)
Q Consensus       167 ~---------------~~--~~----~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (298)
                      -               +.  .+    . .++..+-.+|.|.|.+++......                      .++++.
T Consensus       121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N----------------------~p~ei~  178 (209)
T KOG3191|consen  121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN----------------------KPKEIL  178 (209)
T ss_pred             CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc----------------------CHHHHH
Confidence            1               01  01    1 677788889999999998654311                      134677


Q ss_pred             HHHHhCCCcEEEE
Q psy2408         225 DLLNKSGFELIKI  237 (298)
Q Consensus       225 ~~l~~~Gf~~~~~  237 (298)
                      ..++..||.+...
T Consensus       179 k~l~~~g~~~~~~  191 (209)
T KOG3191|consen  179 KILEKKGYGVRIA  191 (209)
T ss_pred             HHHhhcccceeEE
Confidence            7788888876543

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.84  E-value=9.6e-09  Score=85.93  Aligned_cols=107  Identities=24%  Similarity=0.258  Sum_probs=78.6

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCC-C--CCCCCeeEEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGDALNL-P--FDNDSFDGGW  161 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d~~~~-~--~~~~~fD~V~  161 (298)
                      ..+.+|||+-|=||.++...+. .|+ +|+.||.|..+++.+++++..++++ .++++++.|+.+. .  -..++||+|+
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II  200 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII  200 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred             cCCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence            3588999999999999998877 565 7999999999999999999999886 5789999998763 1  1246899999


Q ss_pred             eccc------ccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         162 FFES------IFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       162 ~~~~------l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +--.      ..-..+. .++..+.++|+|||.|+++..+
T Consensus       201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs  240 (286)
T PF10672_consen  201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS  240 (286)
T ss_dssp             E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            7211      1111233 8899999999999998776543

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.82  E-value=6.1e-08  Score=81.50  Aligned_cols=119  Identities=12%  Similarity=-0.006  Sum_probs=79.6

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-C
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-L  150 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~  150 (298)
                      .++...+-..+..-.+.+|||+|||+|..+..+....+  .+++++|.|+.|++.++..+.................+ .
T Consensus        19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~   98 (274)
T PF09243_consen   19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL   98 (274)
T ss_pred             HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc
Confidence            44445555554444567999999999987766655432  48999999999999999987654321111111111111 1


Q ss_pred             CCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      ++  ...|+|++.++|..+++.   .+++++.+.+.+  .|+|.|+...
T Consensus        99 ~~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~  143 (274)
T PF09243_consen   99 PF--PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP  143 (274)
T ss_pred             cC--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence            22  234999999999998876   888888777766  8888887743

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.82  E-value=7.9e-08  Score=75.47  Aligned_cols=125  Identities=26%  Similarity=0.303  Sum_probs=95.0

Q ss_pred             eEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccccc
Q psy2408          91 RFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM  169 (298)
Q Consensus        91 ~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~  169 (298)
                      +++|||+|.|.-++.++-. +..+++.+|.+..-+...+......+++ |+++++..+++ +....+||+|++..+.   
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~~~~~fd~v~aRAv~---  125 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PEYRESFDVVTARAVA---  125 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TTTTT-EEEEEEESSS---
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cccCCCccEEEeehhc---
Confidence            8999999999999999876 4679999999999999999999999985 79999999988 4446899999987654   


Q ss_pred             ChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCC
Q psy2408         170 NHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       170 ~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                       +. .++.-+.+.+++||.+++.--.        ....+            .++....++..|..+..+..+.
T Consensus       126 -~l~~l~~~~~~~l~~~G~~l~~KG~--------~~~~E------------l~~~~~~~~~~~~~~~~v~~~~  177 (184)
T PF02527_consen  126 -PLDKLLELARPLLKPGGRLLAYKGP--------DAEEE------------LEEAKKAWKKLGLKVLSVPEFE  177 (184)
T ss_dssp             -SHHHHHHHHGGGEEEEEEEEEEESS----------HHH------------HHTHHHHHHCCCEEEEEEEEEE
T ss_pred             -CHHHHHHHHHHhcCCCCEEEEEcCC--------ChHHH------------HHHHHhHHHHhCCEEeeecccc
Confidence             45 8888899999999998886322        11111            2345566777777777766553

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.81  E-value=5.7e-08  Score=88.60  Aligned_cols=123  Identities=18%  Similarity=0.205  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHhCCC-------CCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCce
Q psy2408          69 FAQGSDKLSRIMINKTSI-------TKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKV  140 (298)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~-------~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i  140 (298)
                      +...+.+..+.....+.+       ..+-.+||||||.|.++..+|.. +...++|+|++...+..+.......++ .|+
T Consensus       321 ~~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~  399 (506)
T PRK01544        321 LSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNF  399 (506)
T ss_pred             CCHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeE
Confidence            445555555544444332       23568999999999999999987 468999999999999999999888887 478


Q ss_pred             EEEECCCCCC--CCCCCCeeEEEecccccccCh---------HHHHHHHhhcccCCcEEEEEe
Q psy2408         141 NFLHGDALNL--PFDNDSFDGGWFFESIFHMNH---------SAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       141 ~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~---------~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .+++.|+..+  -++++++|.|+.++.--|.+.         +.++..+.++|+|||.+.+.+
T Consensus       400 ~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T  462 (506)
T PRK01544        400 LLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS  462 (506)
T ss_pred             EEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence            8888887543  366789999988766544332         289999999999999998864

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.79  E-value=1.2e-07  Score=73.60  Aligned_cols=128  Identities=20%  Similarity=0.225  Sum_probs=98.6

Q ss_pred             CCcHHHHHHHHHHHHHHhCCC--CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEE
Q psy2408          66 KDNFAQGSDKLSRIMINKTSI--TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL  143 (298)
Q Consensus        66 ~~~~~~~~~~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~  143 (298)
                      ....++..+++.+.+.+.+..  -.|.++||+-+|+|.++...+.+...+++.||.+...+..++++++..+...+..++
T Consensus        19 ~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~   98 (187)
T COG0742          19 GPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVL   98 (187)
T ss_pred             CCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEE
Confidence            345667778889999998875  478999999999999999999965569999999999999999999998877889999


Q ss_pred             ECCCCCC--CCC-CCCeeEEEecccccc-cChH-HHHHH--HhhcccCCcEEEEEeC
Q psy2408         144 HGDALNL--PFD-NDSFDGGWFFESIFH-MNHS-AALNE--ARRVLKSGSILTLTDL  193 (298)
Q Consensus       144 ~~d~~~~--~~~-~~~fD~V~~~~~l~~-~~~~-~~l~~--~~r~LkpgG~l~i~~~  193 (298)
                      ..|+...  ... .++||+|+.---+.. +.+. ..+..  -..+|+|+|.+++-..
T Consensus        99 ~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~  155 (187)
T COG0742          99 RNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD  155 (187)
T ss_pred             eecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence            9998743  122 235999998555441 2222 22223  4578999999888543

>KOG3420|consensus

Probab=98.78  E-value=2.5e-08  Score=72.87  Aligned_cols=91  Identities=22%  Similarity=0.333  Sum_probs=71.0

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      .+...+-+-.+--.|++++|+|||.|-++...+......|.|+|++++.++.+.+++++..+  ++.++++|+.++.+..
T Consensus        35 sM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~  112 (185)
T KOG3420|consen   35 SMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKG  112 (185)
T ss_pred             HHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccC
Confidence            34444444445457899999999999998555542245899999999999999999987765  5799999999987777


Q ss_pred             CCeeEEEeccccc
Q psy2408         155 DSFDGGWFFESIF  167 (298)
Q Consensus       155 ~~fD~V~~~~~l~  167 (298)
                      +.||.++.+--+.
T Consensus       113 g~fDtaviNppFG  125 (185)
T KOG3420|consen  113 GIFDTAVINPPFG  125 (185)
T ss_pred             CeEeeEEecCCCC
Confidence            8999998865553

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.78  E-value=2e-08  Score=84.40  Aligned_cols=88  Identities=17%  Similarity=0.178  Sum_probs=72.5

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--  151 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--  151 (298)
                      +.+.+++.+.+.++..+||++||.|..+..+++..  .++|+|+|.++.+++.+++++..   .+++.++++|+.++.  
T Consensus         7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~   83 (296)
T PRK00050          7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEV   83 (296)
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHH
Confidence            46677888888888999999999999999999975  37999999999999999988765   357999999998762  


Q ss_pred             CCC--CCeeEEEecccc
Q psy2408         152 FDN--DSFDGGWFFESI  166 (298)
Q Consensus       152 ~~~--~~fD~V~~~~~l  166 (298)
                      .+.  .++|.|++...+
T Consensus        84 l~~~~~~vDgIl~DLGv  100 (296)
T PRK00050         84 LAEGLGKVDGILLDLGV  100 (296)
T ss_pred             HHcCCCccCEEEECCCc
Confidence            222  279999875544

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.78  E-value=7.4e-08  Score=84.00  Aligned_cols=114  Identities=18%  Similarity=0.143  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-C
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-P  151 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~  151 (298)
                      ...+...+++.+...+ .+|||++||+|.++..+++.. .+|+|+|+++.+++.+++++...++. +++++.+|+.++ +
T Consensus       183 ~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~  259 (353)
T TIGR02143       183 NIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQ  259 (353)
T ss_pred             HHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHH
Confidence            4566666666665333 479999999999999998853 59999999999999999999988874 699999998764 1


Q ss_pred             -------C---C-----CCCeeEEEecccccccC-hHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 -------F---D-----NDSFDGGWFFESIFHMN-HSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 -------~---~-----~~~fD~V~~~~~l~~~~-~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                             +   .     ...||+|++.=. . .. .+.+++.+.   +|++.+++++-.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~d~v~lDPP-R-~G~~~~~l~~l~---~~~~ivYvsC~p  313 (353)
T TIGR02143       260 AMNGVREFRRLKGIDLKSYNCSTIFVDPP-R-AGLDPDTCKLVQ---AYERILYISCNP  313 (353)
T ss_pred             HHhhccccccccccccccCCCCEEEECCC-C-CCCcHHHHHHHH---cCCcEEEEEcCH
Confidence                   0   0     013788876322 1 11 114444443   478888887543

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.75  E-value=1.1e-07  Score=83.33  Aligned_cols=114  Identities=19%  Similarity=0.211  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-C
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-P  151 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~  151 (298)
                      .+.+...+.+.+... +.+|||++||+|.++..+++. ..+|+++|.|+.+++.+++++...++. +++++++|+.++ +
T Consensus       192 ~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~  268 (362)
T PRK05031        192 NEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQ  268 (362)
T ss_pred             HHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHH
Confidence            456666666665432 357999999999999988884 458999999999999999999988874 799999998763 1


Q ss_pred             -CC--------------CCCeeEEEecccccccC-hHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 -FD--------------NDSFDGGWFFESIFHMN-HSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 -~~--------------~~~fD~V~~~~~l~~~~-~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                       +.              ..+||+|++.---  .. ...+++.+.+   |++.+++++-.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~~---~~~ivyvSC~p  322 (362)
T PRK05031        269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQA---YERILYISCNP  322 (362)
T ss_pred             HHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHHc---cCCEEEEEeCH
Confidence             10              1258998863321  11 1144444443   67888776543

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.74  E-value=1.4e-07  Score=78.97  Aligned_cols=117  Identities=17%  Similarity=0.083  Sum_probs=88.2

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC--C-CCceEEEECCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEG--L-LDKVNFLHGDALN  149 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~--~-~~~i~~~~~d~~~  149 (298)
                      .++...+.-.....+ .+||-||.|.|.++..+.+.. -.+++.||+++..++.|++.+....  . ++++.++..|..+
T Consensus        63 hEml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~  141 (282)
T COG0421          63 HEMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE  141 (282)
T ss_pred             HHHHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH
Confidence            333344333344444 699999999999999999964 3699999999999999999987433  2 3789999999887


Q ss_pred             C--CCCCCCeeEEEecccccccC-----hHHHHHHHhhcccCCcEEEEEe
Q psy2408         150 L--PFDNDSFDGGWFFESIFHMN-----HSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       150 ~--~~~~~~fD~V~~~~~l~~~~-----~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +  ..+ ++||+|++-.+=.--+     ...+++.+++.|+++|.++...
T Consensus       142 ~v~~~~-~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         142 FLRDCE-EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             HHHhCC-CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            6  233 4899998744333112     2299999999999999998873

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=2.3e-07  Score=82.43  Aligned_cols=144  Identities=24%  Similarity=0.332  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      .....+....++.+...++.+|||+=||.|.++..++. ...+|+|+|+++++++.|+++++.+++.+ ++|..+++.++
T Consensus       276 ~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~-~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~  353 (432)
T COG2265         276 AVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAK-RVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEF  353 (432)
T ss_pred             HHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcc-cCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHH
Confidence            45678888888999888889999999999999999997 56799999999999999999999999864 99999999887


Q ss_pred             CCC---CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHH
Q psy2408         151 PFD---NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLL  227 (298)
Q Consensus       151 ~~~---~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  227 (298)
                      ...   ...+|.|+..--=. --++.+++.+ .-++|...+++++-+        ..               ...=...|
T Consensus       354 ~~~~~~~~~~d~VvvDPPR~-G~~~~~lk~l-~~~~p~~IvYVSCNP--------~T---------------laRDl~~L  408 (432)
T COG2265         354 TPAWWEGYKPDVVVVDPPRA-GADREVLKQL-AKLKPKRIVYVSCNP--------AT---------------LARDLAIL  408 (432)
T ss_pred             hhhccccCCCCEEEECCCCC-CCCHHHHHHH-HhcCCCcEEEEeCCH--------HH---------------HHHHHHHH
Confidence            422   24789987511000 0001344444 345777788887644        11               11222467


Q ss_pred             HhCCCcEEEEEeCC
Q psy2408         228 NKSGFELIKIDDIT  241 (298)
Q Consensus       228 ~~~Gf~~~~~~~~~  241 (298)
                      .+.|+.+..+..+.
T Consensus       409 ~~~gy~i~~v~~~D  422 (432)
T COG2265         409 ASTGYEIERVQPFD  422 (432)
T ss_pred             HhCCeEEEEEEEec
Confidence            77888777666544

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.74  E-value=3.3e-07  Score=78.22  Aligned_cols=109  Identities=20%  Similarity=0.156  Sum_probs=91.9

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      .+|.+|||+-+|.|.+++.+|.....+|+++|++|..++..++++..+++.+.+..+++|+.......+.+|.|++...-
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~  266 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK  266 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence            46999999999999999999994333599999999999999999999999888999999999886444789999875432


Q ss_pred             cccChH-HHHHHHhhcccCCcEEEEEeCCCCCCC
Q psy2408         167 FHMNHS-AALNEARRVLKSGSILTLTDLPLLSVS  199 (298)
Q Consensus       167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~  199 (298)
                          +. .++..+.+.+++||.+...+.......
T Consensus       267 ----~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~  296 (341)
T COG2520         267 ----SAHEFLPLALELLKDGGIIHYYEFVPEDDI  296 (341)
T ss_pred             ----cchhhHHHHHHHhhcCcEEEEEeccchhhc
Confidence                33 788889999999999999887755543

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.73  E-value=9.7e-08  Score=76.31  Aligned_cols=117  Identities=26%  Similarity=0.324  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHH-------hcCC-CCceEE
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR-VDGITISKFQQESAMKTAK-------AEGL-LDKVNF  142 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~-------~~~~-~~~i~~  142 (298)
                      ........+++.+++.++...+|||||.|......+...+++ .+|+++.+...+.|+....       ..+. ...+.+
T Consensus        26 i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l  105 (205)
T PF08123_consen   26 ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL  105 (205)
T ss_dssp             CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence            345567778888999999999999999999988888766765 9999999988877765332       2232 246788


Q ss_pred             EECCCCCCCCC---CCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEE
Q psy2408         143 LHGDALNLPFD---NDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTL  190 (298)
Q Consensus       143 ~~~d~~~~~~~---~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i  190 (298)
                      ..+|+.+.++.   -...|+|+++....  .+.  ..|.+...-||+|.+++-
T Consensus       106 ~~gdfl~~~~~~~~~s~AdvVf~Nn~~F--~~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  106 IHGDFLDPDFVKDIWSDADVVFVNNTCF--DPDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             ECS-TTTHHHHHHHGHC-SEEEE--TTT---HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             eccCccccHhHhhhhcCCCEEEEecccc--CHHHHHHHHHHHhcCCCCCEEEE
Confidence            89998764321   13579999887653  333  777788888999877654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.70  E-value=3e-07  Score=79.04  Aligned_cols=138  Identities=18%  Similarity=0.167  Sum_probs=101.6

Q ss_pred             CCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--------------------
Q psy2408          52 GGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--------------------  111 (298)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--------------------  111 (298)
                      |..+|--.|......+++   .+.++..|+...+..++..++|-=||+|.+.+..|....                    
T Consensus       158 G~sLhkRGyR~~~g~ApL---ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~  234 (381)
T COG0116         158 GDSLHKRGYRVYDGPAPL---KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDK  234 (381)
T ss_pred             CcchhhccccccCCCCCc---hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccH
Confidence            444443344442333333   466777888888888889999999999999998887421                    


Q ss_pred             -------------C-------eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccc-ccC
Q psy2408         112 -------------C-------RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIF-HMN  170 (298)
Q Consensus       112 -------------~-------~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~-~~~  170 (298)
                                   +       .++|+|+++.+++.|+.++..+|+.+.|+|.++|+..++-+-+.+|+|+++--.- -+.
T Consensus       235 ~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg  314 (381)
T COG0116         235 DLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLG  314 (381)
T ss_pred             HHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcC
Confidence                         1       3779999999999999999999999999999999999854337899999863321 111


Q ss_pred             h------H--HHHHHHhhcccCCcEEEEEe
Q psy2408         171 H------S--AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       171 ~------~--~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +      .  .+.+.+++.++-.++.+++.
T Consensus       315 ~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt  344 (381)
T COG0116         315 SEALVAKLYREFGRTLKRLLAGWSRYVFTT  344 (381)
T ss_pred             ChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence            1      2  55566777777777877764

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.69  E-value=1.2e-07  Score=78.30  Aligned_cols=105  Identities=19%  Similarity=0.088  Sum_probs=79.0

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC---CCceEEEECCCCCC-CCCCC-CeeEEE
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGL---LDKVNFLHGDALNL-PFDND-SFDGGW  161 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~---~~~i~~~~~d~~~~-~~~~~-~fD~V~  161 (298)
                      .+.+||-||.|.|..+..+.+.. ..++++||+++..++.|++.+.....   +++++++..|...+ .-..+ +||+|+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi  155 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII  155 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence            56799999999999999998864 36999999999999999998774321   36899999998764 11224 899998


Q ss_pred             ecccccccC-----hHHHHHHHhhcccCCcEEEEEe
Q psy2408         162 FFESIFHMN-----HSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       162 ~~~~l~~~~-----~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .-..-...+     ...+++.+.+.|+|+|.+++..
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            743321111     2299999999999999999875

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.68  E-value=4.4e-07  Score=72.58  Aligned_cols=120  Identities=23%  Similarity=0.199  Sum_probs=86.7

Q ss_pred             EEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC-CeeEEEeccccccc
Q psy2408          92 FIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND-SFDGGWFFESIFHM  169 (298)
Q Consensus        92 vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~fD~V~~~~~l~~~  169 (298)
                      |.||||-.|.+..+|.+..- .+++++|+++.-++.|++.+...++.+++++..+|..+. ++.+ ..|.|+..++--  
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGMGG--   77 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGMGG--   77 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-H--
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecCCH--
Confidence            68999999999999999632 379999999999999999999999999999999997652 2333 489998766542  


Q ss_pred             ChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEe
Q psy2408         170 NHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDD  239 (298)
Q Consensus       170 ~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  239 (298)
                       ..  .+|.+....++....|++....                        ....++.+|.+.||.+++..-
T Consensus        78 -~lI~~ILe~~~~~~~~~~~lILqP~~------------------------~~~~LR~~L~~~gf~I~~E~l  124 (205)
T PF04816_consen   78 -ELIIEILEAGPEKLSSAKRLILQPNT------------------------HAYELRRWLYENGFEIIDEDL  124 (205)
T ss_dssp             -HHHHHHHHHTGGGGTT--EEEEEESS-------------------------HHHHHHHHHHTTEEEEEEEE
T ss_pred             -HHHHHHHHhhHHHhccCCeEEEeCCC------------------------ChHHHHHHHHHCCCEEEEeEE
Confidence             22  7777777777776777775333                        234788999999999887554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.67  E-value=4.2e-08  Score=74.92  Aligned_cols=71  Identities=30%  Similarity=0.463  Sum_probs=55.5

Q ss_pred             eEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCC-eeEEEe
Q psy2408          91 RFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDS-FDGGWF  162 (298)
Q Consensus        91 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~-fD~V~~  162 (298)
                      .|+|+.||.|..++.+|+. ..+|+++|+++..++.++.++.-.|+.++|.++++|+.++.  +.... +|+|++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl   75 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL   75 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred             EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence            7999999999999999994 66999999999999999999999999899999999987752  22122 799986

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.67  E-value=2.3e-07  Score=77.02  Aligned_cols=103  Identities=25%  Similarity=0.348  Sum_probs=66.5

Q ss_pred             CCeEEEeCCCC-CHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHH-hcCCCCceEEEECCCCCCCCCCCCeeEEEecc
Q psy2408          89 GQRFIDIGCGF-GLSGIRLAKAK--GCRVDGITISKFQQESAMKTAK-AEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE  164 (298)
Q Consensus        89 ~~~vLDiGcG~-G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~  164 (298)
                      +.+|+=||||. ...++.+++..  +..++++|+++..++.+++... ..++..++.|+++|....+..-..||+|+...
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa  200 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA  200 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence            45999999997 55566666553  5789999999999999999887 56777889999999987654446899998766


Q ss_pred             cccccC-hH-HHHHHHhhcccCCcEEEEE
Q psy2408         165 SIFHMN-HS-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       165 ~l~~~~-~~-~~l~~~~r~LkpgG~l~i~  191 (298)
                      ...--. +. +++.++.+.++||+.+++-
T Consensus       201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  201 LVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence            554333 44 9999999999999988885

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.64  E-value=2.8e-07  Score=79.41  Aligned_cols=121  Identities=21%  Similarity=0.200  Sum_probs=84.0

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEE
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA--------KGCRVDGITISKFQQESAMKTAKAEGLLDK-VNFLH  144 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-i~~~~  144 (298)
                      ..+++.+.+.+...++.+|||.+||+|.+...+.+.        ....++|+|+++.++..|+.++.-.+.... ..+..
T Consensus        32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~  111 (311)
T PF02384_consen   32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ  111 (311)
T ss_dssp             HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred             HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence            556667777777778889999999999998888763        356899999999999999888766554332 45888


Q ss_pred             CCCCCCCCC--CCCeeEEEeccccccc--------------------ChH--HHHHHHhhcccCCcEEEEEeCC
Q psy2408         145 GDALNLPFD--NDSFDGGWFFESIFHM--------------------NHS--AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       145 ~d~~~~~~~--~~~fD~V~~~~~l~~~--------------------~~~--~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .|....+..  .+.||+|+++-.+-..                    ...  .++..+.+.|++||++.+..+.
T Consensus       112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~  185 (311)
T PF02384_consen  112 GDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN  185 (311)
T ss_dssp             S-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred             cccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence            887654322  4789999985332211                    112  7889999999999997776543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG3201|consensus

Probab=98.62  E-value=4.9e-08  Score=72.68  Aligned_cols=151  Identities=15%  Similarity=0.198  Sum_probs=100.2

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCC-CHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCC--ceEEEECCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGF-GLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLD--KVNFLHGDALN  149 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~--~i~~~~~d~~~  149 (298)
                      +.+.-.+++....-.|.+|||+|.|. |..+..+|.. ....|...|-++..++..+.....+....  ++.....+...
T Consensus        15 eala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~   94 (201)
T KOG3201|consen   15 EALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG   94 (201)
T ss_pred             HHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh
Confidence            44555566555555688999999995 6666666664 35689999999999888777654331111  11111111111


Q ss_pred             --CCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHH
Q psy2408         150 --LPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDL  226 (298)
Q Consensus       150 --~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (298)
                        .......||.|++.+++..-... .+++.+++.|+|.|+-++..+-..                     .+.+.+.+.
T Consensus        95 aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg---------------------~sL~kF~de  153 (201)
T KOG3201|consen   95 AQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG---------------------QSLQKFLDE  153 (201)
T ss_pred             hHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc---------------------chHHHHHHH
Confidence              11234689999999999766666 999999999999999777543321                     234567788


Q ss_pred             HHhCCCcEEEEEeCCCCcc
Q psy2408         227 LNKSGFELIKIDDITSHVM  245 (298)
Q Consensus       227 l~~~Gf~~~~~~~~~~~~~  245 (298)
                      ....||.+.-.+++...++
T Consensus       154 ~~~~gf~v~l~enyde~iw  172 (201)
T KOG3201|consen  154 VGTVGFTVCLEENYDEAIW  172 (201)
T ss_pred             HHhceeEEEecccHhHHHH
Confidence            8999998877665544443

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.62  E-value=9.3e-07  Score=70.68  Aligned_cols=130  Identities=21%  Similarity=0.144  Sum_probs=96.7

Q ss_pred             CCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC-eeEEEecccc
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS-FDGGWFFESI  166 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-fD~V~~~~~l  166 (298)
                      +.+++|||+|.|.-+..++-. ++.+++.+|....-+...+....+.+++ |++++++.++++... .. ||+|++..+.
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~-~~~~D~vtsRAva  145 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE-KKQYDVVTSRAVA  145 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc-cccCcEEEeehcc
Confidence            579999999999999998843 5678999999999999999998888884 699999999987532 23 9999987653


Q ss_pred             cccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCc
Q psy2408         167 FHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHV  244 (298)
Q Consensus       167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~  244 (298)
                          +. .++.-+..++++||.+++.-...            ...        -..+........|+.+..+..+....
T Consensus       146 ----~L~~l~e~~~pllk~~g~~~~~k~~~------------~~~--------e~~e~~~a~~~~~~~~~~~~~~~~p~  200 (215)
T COG0357         146 ----SLNVLLELCLPLLKVGGGFLAYKGLA------------GKD--------ELPEAEKAILPLGGQVEKVFSLTVPE  200 (215)
T ss_pred             ----chHHHHHHHHHhcccCCcchhhhHHh------------hhh--------hHHHHHHHHHhhcCcEEEEEEeecCC
Confidence                34 66677788999999875421110            000        12356667777888888777665543

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.61  E-value=7.4e-07  Score=84.68  Aligned_cols=121  Identities=18%  Similarity=0.150  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHh------------------------------------------
Q psy2408          73 SDKLSRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKA------------------------------------------  109 (298)
Q Consensus        73 ~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~------------------------------------------  109 (298)
                      .+.++..|+...+. .++..++|.+||+|.+.+..+..                                          
T Consensus       174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~  253 (702)
T PRK11783        174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA  253 (702)
T ss_pred             cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence            35666777777776 56789999999999999887652                                          


Q ss_pred             -cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC--CCCeeEEEeccccc-ccCh---H-HHHHHHhhc
Q psy2408         110 -KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD--NDSFDGGWFFESIF-HMNH---S-AALNEARRV  181 (298)
Q Consensus       110 -~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~V~~~~~l~-~~~~---~-~~l~~~~r~  181 (298)
                       ...+++|+|+++.+++.|+.++...|+.+.+.+.++|+.+++.+  .++||+|+++--.. .+.+   . .+.+.+.+.
T Consensus       254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~  333 (702)
T PRK11783        254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRR  333 (702)
T ss_pred             ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHH
Confidence             01269999999999999999999999988899999999887543  35799999974432 1221   1 343444444


Q ss_pred             c---cCCcEEEEEeC
Q psy2408         182 L---KSGSILTLTDL  193 (298)
Q Consensus       182 L---kpgG~l~i~~~  193 (298)
                      +   .+|+.+++...
T Consensus       334 lk~~~~g~~~~llt~  348 (702)
T PRK11783        334 LKQQFGGWNAALFSS  348 (702)
T ss_pred             HHHhCCCCeEEEEeC
Confidence            4   48888877544

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.60  E-value=3.4e-07  Score=70.62  Aligned_cols=118  Identities=21%  Similarity=0.337  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      ...+.+++..+-..-.|++|||+|+|+|..++..+......|+..|+.+.....++-+++.+++  .+.+...|...   
T Consensus        64 G~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g---  138 (218)
T COG3897          64 GQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG---  138 (218)
T ss_pred             hHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC---
Confidence            3556777877777778999999999999999988885445899999999999888888888885  48888888766   


Q ss_pred             CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCC
Q psy2408         153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPL  195 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~  195 (298)
                      ++..||+++...+++.=+.. .++.-..++...|-.+++.++..
T Consensus       139 ~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R  182 (218)
T COG3897         139 SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGR  182 (218)
T ss_pred             CCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence            35789999999988765555 77774445555555666655553

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=9.1e-07  Score=77.12  Aligned_cols=125  Identities=22%  Similarity=0.239  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK---GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN  149 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~  149 (298)
                      |+.-.......+.+.+|.+|||++++.|.=+..+++..   +..|+++|.++.-+...++++...|+. ++.+++.|...
T Consensus       141 Qd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~  219 (355)
T COG0144         141 QDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARR  219 (355)
T ss_pred             cCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEeccccc
Confidence            34444455567788999999999999999999999864   356799999999999999999999986 47888888765


Q ss_pred             CC--CC-CCCeeEEEe------cccccccCh----------------H-HHHHHHhhcccCCcEEEEEeCCCCCC
Q psy2408         150 LP--FD-NDSFDGGWF------FESIFHMNH----------------S-AALNEARRVLKSGSILTLTDLPLLSV  198 (298)
Q Consensus       150 ~~--~~-~~~fD~V~~------~~~l~~~~~----------------~-~~l~~~~r~LkpgG~l~i~~~~~~~~  198 (298)
                      ++  .+ .++||.|++      .+++.--++                . ++|..+.++|||||.|+.++.+....
T Consensus       220 ~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e  294 (355)
T COG0144         220 LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE  294 (355)
T ss_pred             ccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence            42  12 235999986      233321111                2 88999999999999999987775543

>PRK00536 speE spermidine synthase; Provisional

Probab=98.59  E-value=7.9e-07  Score=73.56  Aligned_cols=99  Identities=11%  Similarity=-0.002  Sum_probs=75.4

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--CC-CCceEEEECCCCCCCCCCCCeeEEEec
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE--GL-LDKVNFLHGDALNLPFDNDSFDGGWFF  163 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~--~~-~~~i~~~~~d~~~~~~~~~~fD~V~~~  163 (298)
                      +.+.+||=||.|.|..+..+.+.. .+|+.||++++.++.+++.++..  ++ +++++++.. +.+  ...++||+|++-
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD  146 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL  146 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence            355799999999999999999954 49999999999999999965531  11 346766652 221  123689999975


Q ss_pred             ccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         164 ESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       164 ~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ..    .++.+.+.+++.|+|||.++...-
T Consensus       147 s~----~~~~fy~~~~~~L~~~Gi~v~Qs~  172 (262)
T PRK00536        147 QE----PDIHKIDGLKRMLKEDGVFISVAK  172 (262)
T ss_pred             CC----CChHHHHHHHHhcCCCcEEEECCC
Confidence            32    334899999999999999988643

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.56  E-value=3.8e-06  Score=66.73  Aligned_cols=150  Identities=17%  Similarity=0.128  Sum_probs=95.3

Q ss_pred             HHHHHHHHHh---CCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC
Q psy2408          74 DKLSRIMINK---TSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL  148 (298)
Q Consensus        74 ~~~~~~l~~~---~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~  148 (298)
                      ..+...++.-   +.+.+|.+||-+|.++|....+++...  ...|++|+.|+......-..++..   .|+-.+..|+.
T Consensus        56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr  132 (229)
T PF01269_consen   56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDAR  132 (229)
T ss_dssp             -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TT
T ss_pred             hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCC
Confidence            4455555443   567899999999999999999999863  469999999997766555555544   57888999998


Q ss_pred             CC---CCCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchH
Q psy2408         149 NL---PFDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY  223 (298)
Q Consensus       149 ~~---~~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (298)
                      ..   ..--+.+|+|++-- .  -++.  -++.++...||+||.+++.--...-...  ..-...+           .+-
T Consensus       133 ~P~~Y~~lv~~VDvI~~DV-a--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t--~~p~~vf-----------~~e  196 (229)
T PF01269_consen  133 HPEKYRMLVEMVDVIFQDV-A--QPDQARIAALNARHFLKPGGHLIISIKARSIDST--ADPEEVF-----------AEE  196 (229)
T ss_dssp             SGGGGTTTS--EEEEEEE--S--STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SS--SSHHHHH-----------HHH
T ss_pred             ChHHhhcccccccEEEecC-C--ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCc--CCHHHHH-----------HHH
Confidence            74   11235899998633 2  3444  7888888999999999987433111111  0011111           123


Q ss_pred             HHHHHhCCCcEEEEEeCCC
Q psy2408         224 PDLLNKSGFELIKIDDITS  242 (298)
Q Consensus       224 ~~~l~~~Gf~~~~~~~~~~  242 (298)
                      .+.|++.||++.+...+.+
T Consensus       197 ~~~L~~~~~~~~e~i~LeP  215 (229)
T PF01269_consen  197 VKKLKEEGFKPLEQITLEP  215 (229)
T ss_dssp             HHHHHCTTCEEEEEEE-TT
T ss_pred             HHHHHHcCCChheEeccCC
Confidence            3567888999988776643

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=98.55  E-value=4.1e-07  Score=69.99  Aligned_cols=156  Identities=16%  Similarity=0.107  Sum_probs=98.9

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHH------HHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQ------ESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l------~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      .++...+++++++|+|+-.|.|.++..++...+  ..|+++-+.+...      ........ .....|.+.+..+...+
T Consensus        39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~-e~~~aN~e~~~~~~~A~  117 (238)
T COG4798          39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAR-EPVYANVEVIGKPLVAL  117 (238)
T ss_pred             ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhh-hhhhhhhhhhCCccccc
Confidence            456677889999999999999999999988643  4677766544311      11111111 11223455555555555


Q ss_pred             CCCCCCeeEEEeccccccc------ChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcch
Q psy2408         151 PFDNDSFDGGWFFESIFHM------NHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEH  222 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~------~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (298)
                      + +.+..|+++....-+-+      +..  .+.+.+++.|||||.+++.+.......+ ....       ...+..+...
T Consensus       118 ~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~-~~dt-------~~~~ri~~a~  188 (238)
T COG4798         118 G-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSG-LSDT-------ITLHRIDPAV  188 (238)
T ss_pred             C-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCC-hhhh-------hhhcccChHH
Confidence            4 33556666542222111      222  8999999999999999999887655444 1111       1224556778


Q ss_pred             HHHHHHhCCCcEEEEEeCCCCc
Q psy2408         223 YPDLLNKSGFELIKIDDITSHV  244 (298)
Q Consensus       223 ~~~~l~~~Gf~~~~~~~~~~~~  244 (298)
                      +....+.+||.......+.-+.
T Consensus       189 V~a~veaaGFkl~aeS~ilaNp  210 (238)
T COG4798         189 VIAEVEAAGFKLEAESEILANP  210 (238)
T ss_pred             HHHHHHhhcceeeeeehhhcCC
Confidence            8889999999988877665443

>KOG3987|consensus

Probab=98.54  E-value=1.8e-08  Score=78.07  Aligned_cols=144  Identities=15%  Similarity=0.114  Sum_probs=90.2

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccc
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFH  168 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~  168 (298)
                      +.++||+|+|.|..+..++-.. -+|++.++|..|..+.+..    +    .+++  ...++.-.+-+||+|.|...+..
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk----~----ynVl--~~~ew~~t~~k~dli~clNlLDR  181 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKK----N----YNVL--TEIEWLQTDVKLDLILCLNLLDR  181 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhc----C----Ccee--eehhhhhcCceeehHHHHHHHHh
Confidence            4699999999999999887743 3688999999988877644    1    2221  12222222457999999999988


Q ss_pred             cChH-HHHHHHhhcccC-CcEEEEEeCCCC------CCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeC
Q psy2408         169 MNHS-AALNEARRVLKS-GSILTLTDLPLL------SVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       169 ~~~~-~~l~~~~r~Lkp-gG~l~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  240 (298)
                      .-++ ++|+.++.+|+| +|+++++-..+-      +....+..-..+........--....+.++|+.+||.+.....+
T Consensus       182 c~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrl  261 (288)
T KOG3987|consen  182 CFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRL  261 (288)
T ss_pred             hcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence            8888 999999999999 798877532211      11100000111111111100011234567789999988776665


Q ss_pred             CCC
Q psy2408         241 TSH  243 (298)
Q Consensus       241 ~~~  243 (298)
                      +.-
T Consensus       262 PYL  264 (288)
T KOG3987|consen  262 PYL  264 (288)
T ss_pred             Cee
Confidence            543

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.53  E-value=2.2e-06  Score=66.33  Aligned_cols=104  Identities=38%  Similarity=0.519  Sum_probs=75.3

Q ss_pred             EEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC--CCCCC-CCeeEEEecccc
Q psy2408          92 FIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN--LPFDN-DSFDGGWFFESI  166 (298)
Q Consensus        92 vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~-~~fD~V~~~~~l  166 (298)
                      ++|+|||+|... .+.....  ..++++|+++.++..++......+. ..+.+...|...  +++.. ..||++ +....
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~  128 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLV-ISLLV  128 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence            999999999977 4444222  4899999999999985554432111 115788888776  67665 489999 55444


Q ss_pred             cccChH-HHHHHHhhcccCCcEEEEEeCCCCCC
Q psy2408         167 FHMNHS-AALNEARRVLKSGSILTLTDLPLLSV  198 (298)
Q Consensus       167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~  198 (298)
                      .+..+. ..+.++.+.++|+|.+++........
T Consensus       129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~  161 (257)
T COG0500         129 LHLLPPAKALRELLRVLKPGGRLVLSDLLRDGL  161 (257)
T ss_pred             hhcCCHHHHHHHHHHhcCCCcEEEEEeccCCCC
Confidence            444437 99999999999999999987775543

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.51  E-value=6.5e-07  Score=78.11  Aligned_cols=77  Identities=32%  Similarity=0.515  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      .....+...+++.++..++ +|||+-||.|.++..++. ...+|+|+|.++.+++.|+.++..+++. |++|+.+++.++
T Consensus       180 ~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~-~~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~  256 (352)
T PF05958_consen  180 EQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAK-KAKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDF  256 (352)
T ss_dssp             HHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHC-CSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHC
T ss_pred             HHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHh-hCCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccch
Confidence            3567888888888887666 899999999999999999 4679999999999999999999999984 799998876543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.51  E-value=2.3e-06  Score=64.70  Aligned_cols=100  Identities=25%  Similarity=0.253  Sum_probs=72.1

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHH-----hcCCeEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEECCCCCCCCCCCCeeE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAK-----AKGCRVDGITISKFQQESAMKTAKAEG--LLDKVNFLHGDALNLPFDNDSFDG  159 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~fD~  159 (298)
                      .+..+|+|+|||.|.++..++.     .++.+|+++|.++..++.+..+....+  +..++.+...+....+. ....++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  102 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI  102 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence            5778999999999999999998     567899999999999999999988776  44566777776655432 456777


Q ss_pred             EEecccccccChHHHHHHHhhcccCCcEEEEE
Q psy2408         160 GWFFESIFHMNHSAALNEARRVLKSGSILTLT  191 (298)
Q Consensus       160 V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~  191 (298)
                      ++..++--.+.+ .+|+.+.+   |+-..++.
T Consensus       103 ~vgLHaCG~Ls~-~~l~~~~~---~~~~~l~~  130 (141)
T PF13679_consen  103 LVGLHACGDLSD-RALRLFIR---PNARFLVL  130 (141)
T ss_pred             EEEeecccchHH-HHHHHHHH---cCCCEEEE
Confidence            776444432222 55555555   55444443

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.46  E-value=1.7e-06  Score=75.69  Aligned_cols=99  Identities=18%  Similarity=0.134  Sum_probs=81.7

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-CCCCCeeEEEeccc
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAK-G-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-FDNDSFDGGWFFES  165 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~~~~~  165 (298)
                      +.+|||+.||+|..++.++.+. | .+|+++|+++..++.++++++.+++. ++.+++.|+..+- ...+.||+|...- 
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP-  122 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP-  122 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence            4699999999999999999863 4 58999999999999999999888764 5889999987652 1236799998733 


Q ss_pred             ccccChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         166 IFHMNHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       166 l~~~~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +   ..+ .++..+.+.++++|.|+++.
T Consensus       123 f---Gs~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       123 F---GTPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence            2   455 89999999999999999983

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.46  E-value=1e-06  Score=73.85  Aligned_cols=105  Identities=15%  Similarity=0.150  Sum_probs=79.5

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+++.+++.+.+.++..|||+|+|+|.++..|++. +.+++++|+++.+.+..++.+.   ..++++++.+|+.++..+
T Consensus        16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~   91 (262)
T PF00398_consen   16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLY   91 (262)
T ss_dssp             HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGG
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccH
Confidence            567888889988889999999999999999999985 5899999999999999998765   236799999999998654


Q ss_pred             C---CCeeEEEecccccccChHHHHHHHhhcccC
Q psy2408         154 N---DSFDGGWFFESIFHMNHSAALNEARRVLKS  184 (298)
Q Consensus       154 ~---~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkp  184 (298)
                      .   +....|+++-.. ++.. .++.++...-+.
T Consensus        92 ~~~~~~~~~vv~NlPy-~is~-~il~~ll~~~~~  123 (262)
T PF00398_consen   92 DLLKNQPLLVVGNLPY-NISS-PILRKLLELYRF  123 (262)
T ss_dssp             GHCSSSEEEEEEEETG-TGHH-HHHHHHHHHGGG
T ss_pred             HhhcCCceEEEEEecc-cchH-HHHHHHhhcccc
Confidence            3   355666665433 2222 555555553333

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.40  E-value=6.2e-06  Score=69.73  Aligned_cols=108  Identities=17%  Similarity=0.094  Sum_probs=79.3

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHH--HhcC----CCCceEEEECCCCCC-CCCCCCee
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTA--KAEG----LLDKVNFLHGDALNL-PFDNDSFD  158 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~--~~~~----~~~~i~~~~~d~~~~-~~~~~~fD  158 (298)
                      +...+||-+|.|.|.....+.+.+ -.+++-||++|.|++.++...  ...+    -+++++++..|+.++ .-..+.||
T Consensus       288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD  367 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD  367 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence            445699999999999999999976 359999999999999998432  2211    135789999998876 22346899


Q ss_pred             EEEeccc------ccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         159 GGWFFES------IFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       159 ~V~~~~~------l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .|+...-      +.-+-..++..-+.+.|+++|.+++..-.
T Consensus       368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags  409 (508)
T COG4262         368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS  409 (508)
T ss_pred             EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence            9986321      11111127888899999999999987443

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=6.5e-06  Score=65.00  Aligned_cols=111  Identities=22%  Similarity=0.170  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC--RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN  149 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~  149 (298)
                      +..++.+..-+.--+.++..|+|+|+.+|.++..+++..+.  .|+++|+.+-            ....++.++++|++.
T Consensus        29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~------------~~~~~V~~iq~d~~~   96 (205)
T COG0293          29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM------------KPIPGVIFLQGDITD   96 (205)
T ss_pred             HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc------------ccCCCceEEeeeccC
Confidence            33444333333322467899999999999999999997543  5999999762            112358999999987


Q ss_pred             CC--------CCCCCeeEEEecccc--------cccChH----HHHHHHhhcccCCcEEEEEeCC
Q psy2408         150 LP--------FDNDSFDGGWFFESI--------FHMNHS----AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       150 ~~--------~~~~~fD~V~~~~~l--------~~~~~~----~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      -+        +....+|+|++-.+=        .|....    .++.-+..+|+|||.+++-.+-
T Consensus        97 ~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq  161 (205)
T COG0293          97 EDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ  161 (205)
T ss_pred             ccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence            43        334557999863222        222222    5666777899999999997765

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=2.8e-05  Score=60.58  Aligned_cols=149  Identities=16%  Similarity=0.187  Sum_probs=101.4

Q ss_pred             HHHHHHHHHh---CCCCCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC
Q psy2408          74 DKLSRIMINK---TSITKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN  149 (298)
Q Consensus        74 ~~~~~~l~~~---~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~  149 (298)
                      ..+...++.-   +++++|.+||=+|..+|....+++...+ ..+++|++|+......-..+.+.   +|+-.+..|+..
T Consensus        59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~  135 (231)
T COG1889          59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARK  135 (231)
T ss_pred             hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCC
Confidence            4455555544   4578999999999999999999998654 68999999998777666666554   478888999877


Q ss_pred             CC---CCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHH
Q psy2408         150 LP---FDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP  224 (298)
Q Consensus       150 ~~---~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (298)
                      ..   +--+..|+|+.- +.  -++.  -+..++...|++||.++++--...-..+  ..-...+.           +-.
T Consensus       136 P~~Y~~~Ve~VDviy~D-VA--Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT--~dp~~vf~-----------~ev  199 (231)
T COG1889         136 PEKYRHLVEKVDVIYQD-VA--QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVT--ADPEEVFK-----------DEV  199 (231)
T ss_pred             cHHhhhhcccccEEEEe-cC--CchHHHHHHHHHHHhcccCCeEEEEEEeeccccc--CCHHHHHH-----------HHH
Confidence            31   112568888652 22  2344  6778899999999987776544322222  11122221           223


Q ss_pred             HHHHhCCCcEEEEEeCC
Q psy2408         225 DLLNKSGFELIKIDDIT  241 (298)
Q Consensus       225 ~~l~~~Gf~~~~~~~~~  241 (298)
                      ..|++.||++.+..++.
T Consensus       200 ~kL~~~~f~i~e~~~Le  216 (231)
T COG1889         200 EKLEEGGFEILEVVDLE  216 (231)
T ss_pred             HHHHhcCceeeEEeccC
Confidence            45788899998876654

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.36  E-value=1.7e-06  Score=73.15  Aligned_cols=123  Identities=22%  Similarity=0.260  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      ++.-.......+.+.++..|||++++.|.=+..+++..  ...++++|+++..+...+.++...|+. ++.+...|....
T Consensus        70 Qd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~  148 (283)
T PF01189_consen   70 QDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKL  148 (283)
T ss_dssp             HHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHH
T ss_pred             cccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccc
Confidence            34444444555667899999999999999999999875  369999999999999999999999985 577777787665


Q ss_pred             -C-CCCCCeeEEEe------cccccccCh----------------H-HHHHHHhhcc----cCCcEEEEEeCCCC
Q psy2408         151 -P-FDNDSFDGGWF------FESIFHMNH----------------S-AALNEARRVL----KSGSILTLTDLPLL  196 (298)
Q Consensus       151 -~-~~~~~fD~V~~------~~~l~~~~~----------------~-~~l~~~~r~L----kpgG~l~i~~~~~~  196 (298)
                       + .....||.|+.      .+++..-++                . ++|+++.+.+    +|||+++-++-...
T Consensus       149 ~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~  223 (283)
T PF01189_consen  149 DPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS  223 (283)
T ss_dssp             HHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred             cccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence             1 22346999986      222322221                1 8899999999    99999998876543

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.32  E-value=4e-07  Score=72.02  Aligned_cols=105  Identities=20%  Similarity=0.208  Sum_probs=66.3

Q ss_pred             HHHHHhCC-CCC--CCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-
Q psy2408          78 RIMINKTS-ITK--GQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-  151 (298)
Q Consensus        78 ~~l~~~~~-~~~--~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-  151 (298)
                      ..+.+..+ +.+  +.+|||+||++|.++..+.+..  ..+|+|+|+.+.           ... .++.++++|+.+.. 
T Consensus        10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~   77 (181)
T PF01728_consen   10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPEN   77 (181)
T ss_dssp             HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEH
T ss_pred             HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhH
Confidence            34455555 444  4899999999999999999965  479999999764           011 24566666654320 


Q ss_pred             -------CC--CCCeeEEEecccccccCh-----------H-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 -------FD--NDSFDGGWFFESIFHMNH-----------S-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 -------~~--~~~fD~V~~~~~l~~~~~-----------~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                             ++  .+.+|+|++-.+.....+           - ..+.-+...|+|||.+++-.+.
T Consensus        78 ~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~  141 (181)
T PF01728_consen   78 IKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK  141 (181)
T ss_dssp             SHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred             HHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence                   11  268999998663332221           1 5555666789999998887655

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG2730|consensus

Probab=98.30  E-value=5e-07  Score=70.91  Aligned_cols=73  Identities=29%  Similarity=0.451  Sum_probs=61.4

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC----CCCCCCeeEEEe
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL----PFDNDSFDGGWF  162 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V~~  162 (298)
                      ...|+|.-||.|+.+...+. .++.|+++|+++.-+..|+.+++-.|++++|.|+++|+.++    .+....+|+|+.
T Consensus        95 ~~~iidaf~g~gGntiqfa~-~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~  171 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNTIQFAL-QGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL  171 (263)
T ss_pred             cchhhhhhhcCCchHHHHHH-hCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence            45899999999998888887 57899999999999999999999999999999999999875    233334556654

>KOG1709|consensus

Probab=98.22  E-value=1.6e-05  Score=62.41  Aligned_cols=104  Identities=18%  Similarity=0.193  Sum_probs=79.0

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCCCeeEEEecc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDNDSFDGGWFFE  164 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~  164 (298)
                      ..|.+||++|-|-|.....+.+....+=+.++..+..++..+...-..  ..|+.+..+--++.  .++++.||.|+.--
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~yDT  177 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYYDT  177 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEeec
Confidence            567899999999999998888875556667899999888887663322  24566666544432  45688999998755


Q ss_pred             cccccChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         165 SIFHMNHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       165 ~l~~~~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .-++..+. .+.+.+.|+|||+|++-...
T Consensus       178 y~e~yEdl~~~hqh~~rLLkP~gv~SyfN  206 (271)
T KOG1709|consen  178 YSELYEDLRHFHQHVVRLLKPEGVFSYFN  206 (271)
T ss_pred             hhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence            44777777 99999999999999887654

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.18  E-value=2.7e-05  Score=72.02  Aligned_cols=75  Identities=23%  Similarity=0.098  Sum_probs=53.8

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK---------GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFD  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~  153 (298)
                      ...+|||.|||+|.+...++...         ...++|+|+++..+..++..+...+. ..+.+.+.|....     .-.
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~  109 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY  109 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence            34699999999999998887653         14789999999999999988776541 1245555554321     111


Q ss_pred             CCCeeEEEec
Q psy2408         154 NDSFDGGWFF  163 (298)
Q Consensus       154 ~~~fD~V~~~  163 (298)
                      .+.||+|+++
T Consensus       110 ~~~fD~IIgN  119 (524)
T TIGR02987       110 LDLFDIVITN  119 (524)
T ss_pred             cCcccEEEeC
Confidence            2579999985

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=98.17  E-value=2.2e-05  Score=63.68  Aligned_cols=94  Identities=15%  Similarity=0.192  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      +.+.+.+...+  ++..+|+|||||.-.++..+... .+..|+|+|++..+++.........+++  ..+...|...-+ 
T Consensus        93 d~fY~~if~~~--~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~-  167 (251)
T PF07091_consen   93 DEFYDEIFGRI--PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP-  167 (251)
T ss_dssp             HHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH-
T ss_pred             HHHHHHHHhcC--CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC-
Confidence            34444454443  45789999999999998887765 3689999999999999999998888764  667777877643 


Q ss_pred             CCCCeeEEEecccccccChH
Q psy2408         153 DNDSFDGGWFFESIFHMNHS  172 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~  172 (298)
                      +....|+.+..-++..+...
T Consensus       168 ~~~~~DlaLllK~lp~le~q  187 (251)
T PF07091_consen  168 PKEPADLALLLKTLPCLERQ  187 (251)
T ss_dssp             TTSEESEEEEET-HHHHHHH
T ss_pred             CCCCcchhhHHHHHHHHHHH
Confidence            45789999998888777666

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.17  E-value=4.2e-07  Score=65.15  Aligned_cols=98  Identities=23%  Similarity=0.315  Sum_probs=44.2

Q ss_pred             EEeCCCCCHHHHHHHHhc--C--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCCCeeEEEecccc
Q psy2408          93 IDIGCGFGLSGIRLAKAK--G--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDNDSFDGGWFFESI  166 (298)
Q Consensus        93 LDiGcG~G~~~~~l~~~~--~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~l  166 (298)
                      ||+|+..|..+..+++..  .  .+++++|..+. .+..++.+++.++..+++++.++..+.  .++.+++|+++.-. -
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-D   78 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-C
Confidence            689999999998888752  2  37999999985 344445555566667899999998654  23357899998644 2


Q ss_pred             cccChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         167 FHMNHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      |..+.. ..+..+.+.|+|||.+++.+
T Consensus        79 H~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   79 HSYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            222233 88999999999999999875

>KOG2187|consensus

Probab=98.15  E-value=2.2e-05  Score=69.47  Aligned_cols=121  Identities=23%  Similarity=0.295  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-  150 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-  150 (298)
                      +.+.+...+-++++++++..+||+.||||.++..+++ .-.+|+|+++++..++.|+.++..+|+. |.+|+++-++++ 
T Consensus       367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~  444 (534)
T KOG2187|consen  367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLF  444 (534)
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhcc
Confidence            4567788888999999999999999999999999998 4569999999999999999999999985 799999955553 


Q ss_pred             C-CCC---CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         151 P-FDN---DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       151 ~-~~~---~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      + +..   ++-++|....--.---+..+++.+.+.-.+--.+++++-.
T Consensus       445 ~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~  492 (534)
T KOG2187|consen  445 PSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNP  492 (534)
T ss_pred             chhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCH
Confidence            1 111   1223332211111000115666666655566566665433

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.13  E-value=6.7e-06  Score=63.07  Aligned_cols=98  Identities=18%  Similarity=0.211  Sum_probs=77.5

Q ss_pred             CeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec--cccc
Q psy2408          90 QRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF--ESIF  167 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~--~~l~  167 (298)
                      ..+.|+|+|+|.++...++ ..-+|++++.++.....|.+++.-.|. .+++++.+|+.+..|  +..|+|+|-  .+..
T Consensus        34 d~~~DLGaGsGiLs~~Aa~-~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f--e~ADvvicEmlDTaL  109 (252)
T COG4076          34 DTFADLGAGSGILSVVAAH-AAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF--ENADVVICEMLDTAL  109 (252)
T ss_pred             hceeeccCCcchHHHHHHh-hhceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc--cccceeHHHHhhHHh
Confidence            6899999999999988877 456999999999999999988765554 579999999999887  568998763  2222


Q ss_pred             ccChH-HHHHHHhhcccCCcEEEEE
Q psy2408         168 HMNHS-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       168 ~~~~~-~~l~~~~r~LkpgG~l~i~  191 (298)
                      -.... ..++.+...|+-.+.++=.
T Consensus       110 i~E~qVpV~n~vleFLr~d~tiiPq  134 (252)
T COG4076         110 IEEKQVPVINAVLEFLRYDPTIIPQ  134 (252)
T ss_pred             hcccccHHHHHHHHHhhcCCccccH
Confidence            22333 8888888899988887643

>KOG2352|consensus

Probab=98.10  E-value=4.4e-05  Score=67.41  Aligned_cols=114  Identities=19%  Similarity=0.203  Sum_probs=88.9

Q ss_pred             HHHHHHhCCCCCCC-eEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQ-RFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND  155 (298)
Q Consensus        77 ~~~l~~~~~~~~~~-~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  155 (298)
                      ...+...+  .+-. ++|-+|||.-.+...+.+..-..++.+|.|+..++.........  ..-+.+...|+..+.|+++
T Consensus        38 ~~~i~~~~--~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fedE  113 (482)
T KOG2352|consen   38 SGSIMKYL--SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFEDE  113 (482)
T ss_pred             HHHHHHhh--chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCCc
Confidence            33344444  3444 99999999998888887744468999999999999888775422  2348899999999999999


Q ss_pred             CeeEEEecccccccChH-----------HHHHHHhhcccCCcEEEEEeCC
Q psy2408         156 SFDGGWFFESIFHMNHS-----------AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~-----------~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +||+|+.-..+.++-..           ..+.+++|+++|||+++.....
T Consensus       114 SFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~  163 (482)
T KOG2352|consen  114 SFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV  163 (482)
T ss_pred             ceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence            99999998888776432           5578999999999997776663

>KOG2798|consensus

Probab=98.07  E-value=7.7e-05  Score=62.02  Aligned_cols=151  Identities=20%  Similarity=0.177  Sum_probs=95.1

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH---HhcC-------------------------CC---
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTA---KAEG-------------------------LL---  137 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~---~~~~-------------------------~~---  137 (298)
                      .-+||--|||.|+++..|+. .|..+-|=++|--|+--..-.+   +..+                         .+   
T Consensus       151 ki~iLvPGaGlGRLa~dla~-~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~  229 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLAC-LGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH  229 (369)
T ss_pred             CceEEecCCCchhHHHHHHH-hcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence            46899999999999999998 5666667788777654333222   1000                         00   


Q ss_pred             --------CceEEEECCCCCC-C--CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHH
Q psy2408         138 --------DKVNFLHGDALNL-P--FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKF  205 (298)
Q Consensus       138 --------~~i~~~~~d~~~~-~--~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~  205 (298)
                              ...+.-.+|+.+. +  -..++||+|+.++.+....+- +++..+..+|+|||..+=..+..-........ 
T Consensus       230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~-  308 (369)
T KOG2798|consen  230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGV-  308 (369)
T ss_pred             ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCC-
Confidence                    0111223454443 1  112479999998888777777 99999999999999876543322111100000 


Q ss_pred             HHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCccc
Q psy2408         206 KEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMP  246 (298)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~  246 (298)
                           ..-..--++.+++..+....||+++..+.+...+..
T Consensus       309 -----~~~~siEls~edl~~v~~~~GF~~~ke~~Idt~Y~~  344 (369)
T KOG2798|consen  309 -----ENEMSIELSLEDLKRVASHRGFEVEKERGIDTTYGT  344 (369)
T ss_pred             -----cccccccccHHHHHHHHHhcCcEEEEeeeeecccCC
Confidence                 000111246788999999999999988877666655

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.07  E-value=2.7e-05  Score=57.71  Aligned_cols=117  Identities=23%  Similarity=0.307  Sum_probs=74.6

Q ss_pred             eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCCeeEEEecccccccC------hH----HHHHHHhh
Q psy2408         113 RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDSFDGGWFFESIFHMN------HS----AALNEARR  180 (298)
Q Consensus       113 ~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~~------~~----~~l~~~~r  180 (298)
                      +|+++|+.++.++..++++.+.++..++++++.+=..+.  .+.+++|+|+.+....--.      .+    .+++.+.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~   80 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE   80 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence            589999999999999999999998889999998766652  2335899998754331111      12    88999999


Q ss_pred             cccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCC
Q psy2408         181 VLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSH  243 (298)
Q Consensus       181 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  243 (298)
                      +|+|||.+.+..+.-.+...  .+...            ..+|.+-|....|.+.....+...
T Consensus        81 lL~~gG~i~iv~Y~GH~gG~--eE~~a------------v~~~~~~L~~~~~~V~~~~~~N~~  129 (140)
T PF06962_consen   81 LLKPGGIITIVVYPGHPGGK--EESEA------------VEEFLASLDQKEFNVLKYQFINQK  129 (140)
T ss_dssp             HEEEEEEEEEEE--STCHHH--HHHHH------------HHHHHHTS-TTTEEEEEEEESS-S
T ss_pred             hhccCCEEEEEEeCCCCCCH--HHHHH------------HHHHHHhCCcceEEEEEEEccCCC
Confidence            99999999998776433211  11111            224445555667888777766544

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.04  E-value=0.00025  Score=56.35  Aligned_cols=102  Identities=24%  Similarity=0.203  Sum_probs=78.5

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      +.+.++.||||-.|.+..++.+.. ...+++.|+++.-++.|.+.++..++.+++++..+|....--+++.+|+|+..++
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM   94 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM   94 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence            456679999999999999999864 4589999999999999999999999999999999998553223458999986554


Q ss_pred             ccccChH--HHHHHHhhcccCCcEEEEE
Q psy2408         166 IFHMNHS--AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       166 l~~~~~~--~~l~~~~r~LkpgG~l~i~  191 (298)
                      --   ..  .+|.+-..-|+.--++++.
T Consensus        95 GG---~lI~~ILee~~~~l~~~~rlILQ  119 (226)
T COG2384          95 GG---TLIREILEEGKEKLKGVERLILQ  119 (226)
T ss_pred             cH---HHHHHHHHHhhhhhcCcceEEEC
Confidence            32   22  6666666666644455553

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.04  E-value=6.4e-05  Score=64.00  Aligned_cols=87  Identities=17%  Similarity=0.181  Sum_probs=64.1

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      +.+|.++||+||++|.++..+.+ .|++|++||..+ +-...    ..   .+++.....|...+..+.+.+|.++|-.+
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~-rG~~V~AVD~g~-l~~~L----~~---~~~V~h~~~d~fr~~p~~~~vDwvVcDmv  279 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVR-RGMFVTAVDNGP-MAQSL----MD---TGQVEHLRADGFKFRPPRKNVDWLVCDMV  279 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHH-cCCEEEEEechh-cCHhh----hC---CCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence            36899999999999999999999 578999999654 22221    11   25688888887665323678999988554


Q ss_pred             ccccChH-HHHHHHhhcccCC
Q psy2408         166 IFHMNHS-AALNEARRVLKSG  185 (298)
Q Consensus       166 l~~~~~~-~~l~~~~r~Lkpg  185 (298)
                          ..| ...+-+...|..|
T Consensus       280 ----e~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        280 ----EKPARVAELMAQWLVNG  296 (357)
T ss_pred             ----cCHHHHHHHHHHHHhcC
Confidence                345 7778888888766

>PRK10742 putative methyltransferase; Provisional

Probab=98.04  E-value=3.8e-05  Score=62.57  Aligned_cols=90  Identities=17%  Similarity=0.209  Sum_probs=70.9

Q ss_pred             HHHHHhCCCCCCC--eEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc------C--CCCceEEEECCC
Q psy2408          78 RIMINKTSITKGQ--RFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE------G--LLDKVNFLHGDA  147 (298)
Q Consensus        78 ~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~------~--~~~~i~~~~~d~  147 (298)
                      +.+++.++++++.  +|||+-+|+|..+..++. .|++|+++|-++......++.+...      +  +..+++++++|.
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las-~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da  154 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLAS-VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence            5677888888888  999999999999999999 5889999999999998888887764      2  224688899988


Q ss_pred             CCC-CCCCCCeeEEEecccccc
Q psy2408         148 LNL-PFDNDSFDGGWFFESIFH  168 (298)
Q Consensus       148 ~~~-~~~~~~fD~V~~~~~l~~  168 (298)
                      ..+ .-..++||+|++--.+.|
T Consensus       155 ~~~L~~~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        155 LTALTDITPRPQVVYLDPMFPH  176 (250)
T ss_pred             HHHHhhCCCCCcEEEECCCCCC
Confidence            664 212247999987555444

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.01  E-value=4.7e-05  Score=64.40  Aligned_cols=89  Identities=18%  Similarity=0.137  Sum_probs=73.5

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---  151 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---  151 (298)
                      +.+.+++.+.+.++..++|.-||.|..+..+++.. +++|+|+|.++.+++.+++++...  .+++.++++++.++.   
T Consensus         8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l   85 (305)
T TIGR00006         8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHL   85 (305)
T ss_pred             hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHH
Confidence            46677888888888999999999999999999874 589999999999999999988754  357999999988752   


Q ss_pred             --CCCCCeeEEEecccc
Q psy2408         152 --FDNDSFDGGWFFESI  166 (298)
Q Consensus       152 --~~~~~fD~V~~~~~l  166 (298)
                        ...+++|.|++...+
T Consensus        86 ~~~~~~~vDgIl~DLGv  102 (305)
T TIGR00006        86 DELLVTKIDGILVDLGV  102 (305)
T ss_pred             HhcCCCcccEEEEeccC
Confidence              233679999875554

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.98  E-value=0.0011  Score=53.70  Aligned_cols=141  Identities=18%  Similarity=0.197  Sum_probs=77.7

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC-
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD-  153 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-  153 (298)
                      -+..+.+...+ .|.+||-+|=.. ..++.++.. .+.+|+.+|+++..++..++.+++.|++  ++.+..|+.+ |+| 
T Consensus        33 Ra~~~~~~gdL-~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~-~LP~  107 (243)
T PF01861_consen   33 RAALMAERGDL-EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRD-PLPE  107 (243)
T ss_dssp             HHHHHHHTT-S-TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS----T
T ss_pred             HHHHHHhcCcc-cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccc-cCCH
Confidence            34445555444 578999999554 334444432 5679999999999999999999999985  9999999987 333 


Q ss_pred             --CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhC
Q psy2408         154 --NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKS  230 (298)
Q Consensus       154 --~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  230 (298)
                        .++||++++. --+...-. -++.+....||..|......+...+..     ...+            -++.+.+.+.
T Consensus       108 ~~~~~fD~f~TD-PPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s-----~~~~------------~~~Q~~l~~~  169 (243)
T PF01861_consen  108 ELRGKFDVFFTD-PPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEAS-----PDKW------------LEVQRFLLEM  169 (243)
T ss_dssp             TTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-------HHHH------------HHHHHHHHTS
T ss_pred             HHhcCCCEEEeC-CCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCc-----HHHH------------HHHHHHHHHC
Confidence              3899999863 22222223 788899999987773333333322211     1111            1566778899


Q ss_pred             CCcEEEEEe
Q psy2408         231 GFELIKIDD  239 (298)
Q Consensus       231 Gf~~~~~~~  239 (298)
                      ||.+.++..
T Consensus       170 gl~i~dii~  178 (243)
T PF01861_consen  170 GLVITDIIP  178 (243)
T ss_dssp             --EEEEEEE
T ss_pred             CcCHHHHHh
Confidence            998877553

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.97  E-value=3.6e-05  Score=58.21  Aligned_cols=58  Identities=21%  Similarity=0.194  Sum_probs=49.5

Q ss_pred             eEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC
Q psy2408          91 RFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN  149 (298)
Q Consensus        91 ~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~  149 (298)
                      ++||+|||.|..+..+++.. +.+++++|+++.+.+.+++.+...+++ ++.+++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence            48999999999999998863 458999999999999999999887764 58888877655

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.94  E-value=4.9e-06  Score=61.73  Aligned_cols=56  Identities=23%  Similarity=0.342  Sum_probs=46.1

Q ss_pred             eEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCC
Q psy2408         140 VNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPL  195 (298)
Q Consensus       140 i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~  195 (298)
                      +.+++......+|.+++.|+|++.++++|+.-.   .++++++|+|||||+|-++.+..
T Consensus        31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl   89 (185)
T COG4627          31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL   89 (185)
T ss_pred             cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence            344444444557889999999999999999876   99999999999999999986653

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.92  E-value=0.00022  Score=60.05  Aligned_cols=84  Identities=20%  Similarity=0.165  Sum_probs=50.9

Q ss_pred             CCeEEEeCCCCCHHH-HHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEECCCC-C----CCCCCCCeeEEE
Q psy2408          89 GQRFIDIGCGFGLSG-IRLAKAKGCRVDGITISKFQQESAMKTAKAE-GLLDKVNFLHGDAL-N----LPFDNDSFDGGW  161 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~-~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~-~~~~~i~~~~~d~~-~----~~~~~~~fD~V~  161 (298)
                      .-++||||||...+= +..++.++.+++|.|+++..++.|++.+..+ ++.++|.++...-. .    +..+++.||+++
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm  182 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM  182 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence            458999999987663 4344447999999999999999999999998 89899998765322 1    122346899999


Q ss_pred             ecccccccChH
Q psy2408         162 FFESIFHMNHS  172 (298)
Q Consensus       162 ~~~~l~~~~~~  172 (298)
                      |+--++...+.
T Consensus       183 CNPPFy~s~~e  193 (299)
T PF05971_consen  183 CNPPFYSSQEE  193 (299)
T ss_dssp             E-----SS---
T ss_pred             cCCccccChhh
Confidence            98888766554

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG1122|consensus

Probab=97.88  E-value=0.00012  Score=63.31  Aligned_cols=115  Identities=17%  Similarity=0.166  Sum_probs=88.5

Q ss_pred             hCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---CCCCCe
Q psy2408          83 KTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---FDNDSF  157 (298)
Q Consensus        83 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~f  157 (298)
                      .+.+.+|.+|||+++..|.=+.++|..+  ...+++.|.+...+...+..+...|+. +..+.+.|..++|   ++. +|
T Consensus       236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~~-~f  313 (460)
T KOG1122|consen  236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFPG-SF  313 (460)
T ss_pred             ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccCc-cc
Confidence            3456899999999999999998888864  358999999999999999999999985 5667788887664   443 89


Q ss_pred             eEEEe----cc--cccc------c---------Ch-H-HHHHHHhhcccCCcEEEEEeCCCCCCC
Q psy2408         158 DGGWF----FE--SIFH------M---------NH-S-AALNEARRVLKSGSILTLTDLPLLSVS  199 (298)
Q Consensus       158 D~V~~----~~--~l~~------~---------~~-~-~~l~~~~r~LkpgG~l~i~~~~~~~~~  199 (298)
                      |.|+.    +.  ++.-      .         .. . ++|-.+..++++||+|+-++......-
T Consensus       314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~E  378 (460)
T KOG1122|consen  314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEE  378 (460)
T ss_pred             ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhh
Confidence            99985    22  2211      1         11 1 778888899999999999877665433

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=97.85  E-value=0.0053  Score=53.81  Aligned_cols=152  Identities=17%  Similarity=0.174  Sum_probs=84.5

Q ss_pred             CCeEEEeCCCCCHHHHHHHHh----------------cCCeEEEEeCCHHH-HHHHHHH--HHh------cC---CCCc-
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKA----------------KGCRVDGITISKFQ-QESAMKT--AKA------EG---LLDK-  139 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~----------------~~~~v~~vD~s~~~-l~~a~~~--~~~------~~---~~~~-  139 (298)
                      ..+|+|+|||+|.++..+...                +..+|..-|+-.+- -...+..  +..      ..   ...+ 
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~  143 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS  143 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence            569999999999887665331                12456666653211 1111111  000      00   0001 


Q ss_pred             --eEEEECCCCCCCCCCCCeeEEEecccccccChH---------------------------------------HHHHHH
Q psy2408         140 --VNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---------------------------------------AALNEA  178 (298)
Q Consensus       140 --i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---------------------------------------~~l~~~  178 (298)
                        +.-+.+.+..--||.++.++++++.++|++...                                       .+|+.=
T Consensus       144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R  223 (386)
T PLN02668        144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR  223 (386)
T ss_pred             eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              122223444334788999999999999987631                                       334444


Q ss_pred             hhcccCCcEEEEEeCCCCCCCCChh-----HH----H----HHHHh-----------hcccCCCCcchHHHHHHhCC-Cc
Q psy2408         179 RRVLKSGSILTLTDLPLLSVSKNDN-----KF----K----EYVKK-----------NIHSNFILVEHYPDLLNKSG-FE  233 (298)
Q Consensus       179 ~r~LkpgG~l~i~~~~~~~~~~~~~-----~~----~----~~~~~-----------~~~~~~~~~~~~~~~l~~~G-f~  233 (298)
                      .+-|.|||++++.........+...     .+    .    .+...           ....+..+.+|+++.+++.| |.
T Consensus       224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~  303 (386)
T PLN02668        224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA  303 (386)
T ss_pred             HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence            5678899999998777643111000     11    0    11111           11234578999999999887 66


Q ss_pred             EEEEEeC
Q psy2408         234 LIKIDDI  240 (298)
Q Consensus       234 ~~~~~~~  240 (298)
                      +..++.+
T Consensus       304 I~~le~~  310 (386)
T PLN02668        304 IDKLEVF  310 (386)
T ss_pred             eeeeEEe
Confidence            6655543

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.83  E-value=0.00044  Score=59.25  Aligned_cols=102  Identities=25%  Similarity=0.294  Sum_probs=73.5

Q ss_pred             HHhCCCCCCCeEEEeCCC-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC-CCCCCCCCCCee
Q psy2408          81 INKTSITKGQRFIDIGCG-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD-ALNLPFDNDSFD  158 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~fD  158 (298)
                      +....+.||.+|+-+|+| .|.++..+++..+++|+++|.|++-++.|++.-.       -.++... ......-.+.||
T Consensus       159 lk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~~~~~d  231 (339)
T COG1064         159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAVKEIAD  231 (339)
T ss_pred             hhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHhHhhCc
Confidence            344677899999999998 3667777888778999999999999999987732       2344432 111111123489


Q ss_pred             EEEecccccccChHHHHHHHhhcccCCcEEEEEeCCC
Q psy2408         159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPL  195 (298)
Q Consensus       159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~  195 (298)
                      +|+..-.      +..+....+.|+++|++++.-...
T Consensus       232 ~ii~tv~------~~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         232 AIIDTVG------PATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             EEEECCC------hhhHHHHHHHHhcCCEEEEECCCC
Confidence            8875443      467778889999999999987664

>KOG4058|consensus

Probab=97.83  E-value=0.00024  Score=52.48  Aligned_cols=123  Identities=13%  Similarity=0.153  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC
Q psy2408          70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN  149 (298)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~  149 (298)
                      ..+..+-++.++..+.-.+..+.+|+|+|.|.+....++..-...+|+++++..+..++-+.-.+++.....|..-|+-+
T Consensus        54 VpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK  133 (199)
T KOG4058|consen   54 VPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK  133 (199)
T ss_pred             cCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh
Confidence            34556667777888877776799999999999988888842257899999999999999998888888888999999888


Q ss_pred             CCCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         150 LPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       150 ~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      ..+.+  |..|+.+.+=.-+++  +-.++..-|..+..++..-+..+
T Consensus       134 ~dl~d--y~~vviFgaes~m~d--Le~KL~~E~p~nt~vvacRFPLP  176 (199)
T KOG4058|consen  134 VDLRD--YRNVVIFGAESVMPD--LEDKLRTELPANTRVVACRFPLP  176 (199)
T ss_pred             ccccc--cceEEEeehHHHHhh--hHHHHHhhCcCCCeEEEEecCCC
Confidence            76644  544444333333333  33344555667777776655543

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.79  E-value=7.2e-05  Score=60.05  Aligned_cols=156  Identities=17%  Similarity=0.161  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEECCCC
Q psy2408          71 QGSDKLSRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK-VNFLHGDAL  148 (298)
Q Consensus        71 ~~~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-i~~~~~d~~  148 (298)
                      ++...+... ++...+ .++..+||+|+.||.++..+.++...+|+++|....++..--+.      +++ +.+...|+.
T Consensus        62 RG~~KL~~a-le~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r  134 (245)
T COG1189          62 RGGLKLEKA-LEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVR  134 (245)
T ss_pred             cHHHHHHHH-HHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChh
Confidence            344444444 455554 46889999999999999999995445899999988776654322      123 344455666


Q ss_pred             CCCCC--CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhccc----CCCCcch
Q psy2408         149 NLPFD--NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHS----NFILVEH  222 (298)
Q Consensus       149 ~~~~~--~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  222 (298)
                      .+...  .+..|++++--++.  +-..+|..+..+++|++-++...-+......     ..........    +......
T Consensus       135 ~l~~~~~~~~~d~~v~DvSFI--SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr-----~~v~kkGvv~d~~~~~~v~~~  207 (245)
T COG1189         135 YLTPEDFTEKPDLIVIDVSFI--SLKLILPALLLLLKDGGDLVLLVKPQFEAGR-----EQVGKKGVVRDPKLHAEVLSK  207 (245)
T ss_pred             hCCHHHcccCCCeEEEEeehh--hHHHHHHHHHHhcCCCceEEEEecchhhhhh-----hhcCcCceecCcchHHHHHHH
Confidence            55211  24678888755442  2228899999999999987775433221111     0000001111    1122456


Q ss_pred             HHHHHHhCCCcEEEEEeC
Q psy2408         223 YPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       223 ~~~~l~~~Gf~~~~~~~~  240 (298)
                      +.+++.+.||.+......
T Consensus       208 i~~~~~~~g~~~~gl~~S  225 (245)
T COG1189         208 IENFAKELGFQVKGLIKS  225 (245)
T ss_pred             HHHHHhhcCcEEeeeEcc
Confidence            778888899998876643

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=97.63  E-value=0.0079  Score=52.22  Aligned_cols=163  Identities=18%  Similarity=0.127  Sum_probs=83.0

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh--------c---C------CeEEEEeCCH-HHHHHHH------HHHHh
Q psy2408          78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKA--------K---G------CRVDGITISK-FQQESAM------KTAKA  133 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------~---~------~~v~~vD~s~-~~l~~a~------~~~~~  133 (298)
                      ..+......+...+|+|+||.+|..+..+...        .   +      .+|..-|+-. .+-...+      +....
T Consensus         6 ~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~   85 (334)
T PF03492_consen    6 KELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK   85 (334)
T ss_dssp             HHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH
T ss_pred             HHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC
Confidence            33443333455679999999999998877542        1   1      3788888632 2211111      11111


Q ss_pred             cCCCCceEEEECCCCCCCCCCCCeeEEEecccccccCh---------------------------------------H-H
Q psy2408         134 EGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH---------------------------------------S-A  173 (298)
Q Consensus       134 ~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~---------------------------------------~-~  173 (298)
                      .+ +--+.-+.+.+..--+|+++.|+++++.++||+..                                       . .
T Consensus        86 ~~-~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~  164 (334)
T PF03492_consen   86 FR-NYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSS  164 (334)
T ss_dssp             TT-SEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHH
T ss_pred             Cc-eEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHH
Confidence            11 11133445666654578899999999999888642                                       0 3


Q ss_pred             HHHHHhhcccCCcEEEEEeCCCCCCCCC----hhHHHHH-------HHh-----------hcccCCCCcchHHHHHHhCC
Q psy2408         174 ALNEARRVLKSGSILTLTDLPLLSVSKN----DNKFKEY-------VKK-----------NIHSNFILVEHYPDLLNKSG  231 (298)
Q Consensus       174 ~l~~~~r~LkpgG~l~i~~~~~~~~~~~----~~~~~~~-------~~~-----------~~~~~~~~~~~~~~~l~~~G  231 (298)
                      +|+.=.+-|+|||++++..+...+....    ...+..+       ...           ....+..+.+|+...+++.|
T Consensus       165 FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~g  244 (334)
T PF03492_consen  165 FLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEG  244 (334)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHT
T ss_pred             HHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCC
Confidence            4444456688999999987766552110    0111111       111           11234678899999987765


Q ss_pred             -CcEEEEEeCC
Q psy2408         232 -FELIKIDDIT  241 (298)
Q Consensus       232 -f~~~~~~~~~  241 (298)
                       |.+..++.+.
T Consensus       245 sF~I~~le~~~  255 (334)
T PF03492_consen  245 SFEIEKLELFE  255 (334)
T ss_dssp             SEEEEEEEEEE
T ss_pred             CEEEEEEEEEe
Confidence             7776555443

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.61  E-value=0.0003  Score=57.00  Aligned_cols=90  Identities=23%  Similarity=0.390  Sum_probs=56.0

Q ss_pred             HHHHHhCCCCCCC--eEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH---hcCC-----CCceEEEECCC
Q psy2408          78 RIMINKTSITKGQ--RFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAK---AEGL-----LDKVNFLHGDA  147 (298)
Q Consensus        78 ~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~---~~~~-----~~~i~~~~~d~  147 (298)
                      +.+++.++++++.  +|||.-+|.|..+..++. .|++|++++-|+.+....+.-+.   ...-     ..+++++++|.
T Consensus        63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~-~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~  141 (234)
T PF04445_consen   63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLAS-LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA  141 (234)
T ss_dssp             SHHHHHTT-BTTB---EEETT-TTSHHHHHHHH-HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred             cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHc-cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence            4567777777764  999999999999999987 79999999999977655554332   2111     13799999998


Q ss_pred             CCC-CCCCCCeeEEEecccccc
Q psy2408         148 LNL-PFDNDSFDGGWFFESIFH  168 (298)
Q Consensus       148 ~~~-~~~~~~fD~V~~~~~l~~  168 (298)
                      .++ ..++++||+|++--++.+
T Consensus       142 ~~~L~~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  142 LEYLRQPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             CCHCCCHSS--SEEEE--S---
T ss_pred             HHHHhhcCCCCCEEEECCCCCC
Confidence            874 555789999998655543

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG4589|consensus

Probab=97.53  E-value=0.00078  Score=51.96  Aligned_cols=97  Identities=13%  Similarity=0.078  Sum_probs=62.7

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCCCC--------CCCC
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DALNL--------PFDN  154 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~~--------~~~~  154 (298)
                      ++|+++|||+||.+|.++.-..+..  ...|.|||+-.-        .+   + ..+.++.+ |+.+.        .+|+
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p---~-~Ga~~i~~~dvtdp~~~~ki~e~lp~  134 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EP---P-EGATIIQGNDVTDPETYRKIFEALPN  134 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cC---C-CCcccccccccCCHHHHHHHHHhCCC
Confidence            3689999999999999999888863  568999998421        11   1 22444554 66652        2567


Q ss_pred             CCeeEEEeccccc----ccChH--------HHHHHHhhcccCCcEEEEEeCC
Q psy2408         155 DSFDGGWFFESIF----HMNHS--------AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       155 ~~fD~V~~~~~l~----~~~~~--------~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      -..|+|++-..=.    .+.|.        .++.-....++|+|.++.-.+.
T Consensus       135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~  186 (232)
T KOG4589|consen  135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWD  186 (232)
T ss_pred             CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence            7889888632211    11222        3333444567899999887655

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.49  E-value=0.00057  Score=57.86  Aligned_cols=109  Identities=15%  Similarity=0.135  Sum_probs=72.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcCCC---CceEEEECCCCCCCCCCCCeeEEEe
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK-G-CRVDGITISKFQQESAMKTAKAEGLL---DKVNFLHGDALNLPFDNDSFDGGWF  162 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~vD~s~~~l~~a~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~fD~V~~  162 (298)
                      ...+|||+|.|.|..+..+-... . ..++.++.|+..-+............   .+..-++.|-..+|. ...|++|+.
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i~  191 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAIV  191 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeehhhh
Confidence            45689999999998766554432 2 36777888886655555544332211   112223334334443 467999888


Q ss_pred             cccccccChH----HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         163 FESIFHMNHS----AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       163 ~~~l~~~~~~----~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      .+-|.+...+    ..++.+..++.|||.|+|.+...+.
T Consensus       192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~  230 (484)
T COG5459         192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA  230 (484)
T ss_pred             hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence            8777777655    6889999999999999999877443

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=97.44  E-value=0.012  Score=49.18  Aligned_cols=147  Identities=14%  Similarity=0.037  Sum_probs=92.0

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEECCCCC-C-------CCCCCCee
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG--LLDKVNFLHGDALN-L-------PFDNDSFD  158 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~i~~~~~d~~~-~-------~~~~~~fD  158 (298)
                      ...|+.+|||.=.-...+....+.+++=+|. ++.++.=++.+...+  ...+.+++..|+.. +       .+..+..-
T Consensus        82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt  160 (260)
T TIGR00027        82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT  160 (260)
T ss_pred             CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence            4579999999876666664322445555554 445555555555433  23568889999862 1       12223456


Q ss_pred             EEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChh-HHHHHHHh------hcccCCCCcchHHHHHH
Q psy2408         159 GGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDN-KFKEYVKK------NIHSNFILVEHYPDLLN  228 (298)
Q Consensus       159 ~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~l~  228 (298)
                      ++++-+++.+++..   .+++.+.+...||+.+++.......... .. ........      .......+.+++..+|.
T Consensus       161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  239 (260)
T TIGR00027       161 AWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEW-RAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLA  239 (260)
T ss_pred             eeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhH-HHHHHHHHHHhhhcccccccccCCChhhHHHHHH
Confidence            78888999999887   8999999988899998886554311110 00 01111101      11123456889999999


Q ss_pred             hCCCcEEEE
Q psy2408         229 KSGFELIKI  237 (298)
Q Consensus       229 ~~Gf~~~~~  237 (298)
                      +.||++...
T Consensus       240 ~~Gw~~~~~  248 (260)
T TIGR00027       240 ERGWRASEH  248 (260)
T ss_pred             HCCCeeecC
Confidence            999997654

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.42  E-value=0.00036  Score=55.34  Aligned_cols=105  Identities=22%  Similarity=0.254  Sum_probs=55.8

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---c--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CC--CCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---K--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FD--NDS  156 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~--~~~  156 (298)
                      ++..|+|+|.-.|..+..+|..   .  .++|+|+|++....  .+...+...+.++|+++++|..+..    ..  ...
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~--~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~  109 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH--NRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASP  109 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh--chHHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence            3469999999999998888764   2  47999999953221  2223333445578999999987741    11  112


Q ss_pred             eeEEEe-cccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         157 FDGGWF-FESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       157 fD~V~~-~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .+-++. -++-|.-..- ..|+....++++|+++++.+..
T Consensus       110 ~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~  149 (206)
T PF04989_consen  110 PHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTI  149 (206)
T ss_dssp             -SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred             CCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence            332322 2333333334 8888899999999999997654

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG1501|consensus

Probab=97.39  E-value=0.00039  Score=60.47  Aligned_cols=96  Identities=20%  Similarity=0.199  Sum_probs=68.0

Q ss_pred             CeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC-CCCCeeEEEecccc-c
Q psy2408          90 QRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF-DNDSFDGGWFFESI-F  167 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~~~l-~  167 (298)
                      ..|||||+|||.++...++..+-.|++++.-..|.+.|+....+.|..++|.++.---.+... +....|+++.-... +
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtE  147 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTE  147 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhh
Confidence            478999999999999888865568999999999999999999999999999998876655432 12335655532221 1


Q ss_pred             ccCh-H-HHHHHHhhcc-cCC
Q psy2408         168 HMNH-S-AALNEARRVL-KSG  185 (298)
Q Consensus       168 ~~~~-~-~~l~~~~r~L-kpg  185 (298)
                      -+.. . ..++++++.| +||
T Consensus       148 ligeGalps~qhAh~~L~~~n  168 (636)
T KOG1501|consen  148 LIGEGALPSLQHAHDMLLVDN  168 (636)
T ss_pred             hhccccchhHHHHHHHhcccC
Confidence            1222 1 5555665544 444

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.36  E-value=0.0022  Score=58.50  Aligned_cols=100  Identities=21%  Similarity=0.184  Sum_probs=70.9

Q ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-----------CC--
Q psy2408          86 ITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-----------LP--  151 (298)
Q Consensus        86 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-----------~~--  151 (298)
                      ..++.+|+-+|||. |..+...++..|+.|+++|.+++.++.++..    |    .+++..|..+           +.  
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----G----A~~v~i~~~e~~~~~~gya~~~s~~  233 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----G----AEFLELDFEEEGGSGDGYAKVMSEE  233 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEEeccccccccccchhhhcchh
Confidence            35789999999997 8888888888899999999999998888763    2    2222211111           10  


Q ss_pred             --------CCC--CCeeEEEecccccccChHHH-HHHHhhcccCCcEEEEEeC
Q psy2408         152 --------FDN--DSFDGGWFFESIFHMNHSAA-LNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       152 --------~~~--~~fD~V~~~~~l~~~~~~~~-l~~~~r~LkpgG~l~i~~~  193 (298)
                              +.+  ..+|+|+.......-+.+.+ .++..+.+||||.++....
T Consensus       234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence                    000  36899987665544444544 5999999999999887644

>KOG3115|consensus

Probab=97.36  E-value=0.00079  Score=52.63  Aligned_cols=104  Identities=25%  Similarity=0.383  Sum_probs=67.8

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC------CCCceEEEECCCCCC-C--CCCCCee
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEG------LLDKVNFLHGDALNL-P--FDNDSFD  158 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~------~~~~i~~~~~d~~~~-~--~~~~~fD  158 (298)
                      .-.+.|||||-|.+...|+... ..-+.|.++-...-+..++++....      .-.|+.+...+.... |  +..++.+
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence            3478999999999999999874 5689999998877777777766443      124566776665543 2  1222222


Q ss_pred             EEEecccccccCh---------HHHHHHHhhcccCCcEEEEEe
Q psy2408         159 GGWFFESIFHMNH---------SAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       159 ~V~~~~~l~~~~~---------~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      -.+...---|+..         ..++.+..-+|++||.++..+
T Consensus       141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit  183 (249)
T KOG3115|consen  141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT  183 (249)
T ss_pred             cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence            2222221122221         167888999999999988753

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.33  E-value=0.0039  Score=57.00  Aligned_cols=120  Identities=21%  Similarity=0.152  Sum_probs=85.9

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-----CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-----GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL  148 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~  148 (298)
                      ..+.+.|++.+.+.+..+|+|..||+|.+.....+..     ...++|.++++.....|+..+--+++...+....+|-.
T Consensus       172 ~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl  251 (489)
T COG0286         172 REVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL  251 (489)
T ss_pred             HHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc
Confidence            5566667777776778899999999999877776653     26799999999999999999988887543455556554


Q ss_pred             CCCC-----CCCCeeEEEeccccc-------------------cc-C-----hH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         149 NLPF-----DNDSFDGGWFFESIF-------------------HM-N-----HS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       149 ~~~~-----~~~~fD~V~~~~~l~-------------------~~-~-----~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .-|.     ..+.||.|+++--+.                   +- .     .. .+++.+...|+|||+..|..+
T Consensus       252 ~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~  327 (489)
T COG0286         252 SNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP  327 (489)
T ss_pred             cCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence            4332     236699988743221                   10 0     11 789999999999987665543

>KOG0024|consensus

Probab=97.32  E-value=0.0009  Score=56.25  Aligned_cols=109  Identities=19%  Similarity=0.174  Sum_probs=75.7

Q ss_pred             HHHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-C-CCCC----
Q psy2408          79 IMINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-D-ALNL----  150 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d-~~~~----  150 (298)
                      ....+..+++|.+||-+|+|+ |..+...++.+|+ +|+.+|+++..++.|++.    |... +..... + ...+    
T Consensus       160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~----Ga~~-~~~~~~~~~~~~~~~~v  234 (354)
T KOG0024|consen  160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF----GATV-TDPSSHKSSPQELAELV  234 (354)
T ss_pred             hhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh----CCeE-EeeccccccHHHHHHHH
Confidence            445666778999999999997 8888888888775 899999999999999983    2211 111111 1 1111    


Q ss_pred             --CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         151 --PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       151 --~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                        .+....+|+++-+..++     ..++.....+++||.+++..+....
T Consensus       235 ~~~~g~~~~d~~~dCsG~~-----~~~~aai~a~r~gGt~vlvg~g~~~  278 (354)
T KOG0024|consen  235 EKALGKKQPDVTFDCSGAE-----VTIRAAIKATRSGGTVVLVGMGAEE  278 (354)
T ss_pred             HhhccccCCCeEEEccCch-----HHHHHHHHHhccCCEEEEeccCCCc
Confidence              12234588887655544     5667778899999998888776543

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.32  E-value=0.0025  Score=53.27  Aligned_cols=90  Identities=19%  Similarity=0.151  Sum_probs=74.1

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-  151 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-  151 (298)
                      -+....++.+.+.++...+|.--|.|..+..+.+.++  ++++|+|-++.+++.|+++....+  +++.+++.++.++. 
T Consensus        10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~   87 (314)
T COG0275          10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAE   87 (314)
T ss_pred             hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHH
Confidence            3567788888889999999999999999999999864  689999999999999999987654  68999999887752 


Q ss_pred             ----CCCCCeeEEEecccc
Q psy2408         152 ----FDNDSFDGGWFFESI  166 (298)
Q Consensus       152 ----~~~~~fD~V~~~~~l  166 (298)
                          ...+++|.|+.-..+
T Consensus        88 ~l~~~~i~~vDGiL~DLGV  106 (314)
T COG0275          88 ALKELGIGKVDGILLDLGV  106 (314)
T ss_pred             HHHhcCCCceeEEEEeccC
Confidence                224688888864443

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=97.30  E-value=0.0052  Score=49.72  Aligned_cols=146  Identities=16%  Similarity=0.078  Sum_probs=91.4

Q ss_pred             hhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-----C
Q psy2408          37 TLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-----G  111 (298)
Q Consensus        37 ~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~  111 (298)
                      -|||..++..|+.+..-+.   |+.+..+.    .........+....   .+.+.+|+|+|+..-+..+...+     .
T Consensus        37 ~FYD~~GS~LFe~I~~LPE---YYpTRtEa----aIl~~~a~Eia~~~---g~~~lveLGsGns~Ktr~Llda~~~~~~~  106 (321)
T COG4301          37 YFYDDRGSELFEQITRLPE---YYPTRTEA----AILQARAAEIASIT---GACTLVELGSGNSTKTRILLDALAHRGSL  106 (321)
T ss_pred             eeecccHHHHHHHHhcccc---ccCchhHH----HHHHHHHHHHHHhh---CcceEEEecCCccHHHHHHHHHhhhcCCc
Confidence            4788776677777654332   44441111    11223333344333   46799999999988887776652     2


Q ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-C-CCCCCCee-EEEecccccccChH---HHHHHHhhcccCC
Q psy2408         112 CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-L-PFDNDSFD-GGWFFESIFHMNHS---AALNEARRVLKSG  185 (298)
Q Consensus       112 ~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~fD-~V~~~~~l~~~~~~---~~l~~~~r~Lkpg  185 (298)
                      .+++.+|+|...+...-+.+...-..-.+.-+++|... + .+|..+=- .++.-.++-++...   .+|..+...|+||
T Consensus       107 ~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pG  186 (321)
T COG4301         107 LRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPG  186 (321)
T ss_pred             ceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCc
Confidence            68999999999887666555443322235556677643 2 12233323 33445666666544   9999999999999


Q ss_pred             cEEEEEe
Q psy2408         186 SILTLTD  192 (298)
Q Consensus       186 G~l~i~~  192 (298)
                      -++++..
T Consensus       187 d~~LlGv  193 (321)
T COG4301         187 DYFLLGV  193 (321)
T ss_pred             ceEEEec
Confidence            9988853

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.30  E-value=0.00041  Score=61.76  Aligned_cols=97  Identities=15%  Similarity=0.114  Sum_probs=63.5

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCC--HHHHHHHHHHHHhcCCCCceEEEECCC-CCCCCCCCCeeEEEeccc
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITIS--KFQQESAMKTAKAEGLLDKVNFLHGDA-LNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s--~~~l~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~fD~V~~~~~  165 (298)
                      -..|+|..+|.|.++..|... +.-|.-|=+.  +..+...    -+.|+-+   +. .|- +.++.=..+||+|.+.++
T Consensus       366 iRNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~~~~ntL~vI----ydRGLIG---~y-hDWCE~fsTYPRTYDLlHA~~l  436 (506)
T PF03141_consen  366 IRNVMDMNAGYGGFAAALIDD-PVWVMNVVPVSGPNTLPVI----YDRGLIG---VY-HDWCEAFSTYPRTYDLLHADGL  436 (506)
T ss_pred             eeeeeeecccccHHHHHhccC-CceEEEecccCCCCcchhh----hhcccch---hc-cchhhccCCCCcchhheehhhh
Confidence            358999999999999999873 3333222221  2222222    2234321   11 222 223322479999999999


Q ss_pred             ccccChH----HHHHHHhhcccCCcEEEEEeCC
Q psy2408         166 IFHMNHS----AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       166 l~~~~~~----~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +....+.    .+|-++-|+|+|+|.++|-+..
T Consensus       437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD~~  469 (506)
T PF03141_consen  437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV  469 (506)
T ss_pred             hhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence            9887766    8999999999999999996543

; GO: 0008168 methyltransferase activity

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.28  E-value=0.0033  Score=50.28  Aligned_cols=101  Identities=19%  Similarity=0.186  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHhCCC--CCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEEC
Q psy2408          70 AQGSDKLSRIMINKTSI--TKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAE-GLLDKVNFLHG  145 (298)
Q Consensus        70 ~~~~~~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~-~~~~~i~~~~~  145 (298)
                      ..+.+.+.+.+..-.+-  .++.++||||.|.-.+=..+-.+ +|.+.+|.|+++..++.|+..+..+ ++...|++...
T Consensus        58 AdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~q  137 (292)
T COG3129          58 ADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQ  137 (292)
T ss_pred             hHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEec
Confidence            44555555555444332  24568999999987654444333 6899999999999999999998866 66666766554


Q ss_pred             C-CCCC----CCCCCCeeEEEecccccccC
Q psy2408         146 D-ALNL----PFDNDSFDGGWFFESIFHMN  170 (298)
Q Consensus       146 d-~~~~----~~~~~~fD~V~~~~~l~~~~  170 (298)
                      . -..+    --.++.||+++|+-.+|...
T Consensus       138 k~~~~if~giig~nE~yd~tlCNPPFh~s~  167 (292)
T COG3129         138 KDSDAIFNGIIGKNERYDATLCNPPFHDSA  167 (292)
T ss_pred             cCccccccccccccceeeeEecCCCcchhH
Confidence            2 2222    12358899999988776443

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.27  E-value=0.00097  Score=58.62  Aligned_cols=102  Identities=26%  Similarity=0.268  Sum_probs=77.7

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEECCCCCCC-CCCCCeeEEEec
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK-G-CRVDGITISKFQQESAMKTAKAEGLLD-KVNFLHGDALNLP-FDNDSFDGGWFF  163 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~vD~s~~~l~~a~~~~~~~~~~~-~i~~~~~d~~~~~-~~~~~fD~V~~~  163 (298)
                      .+.+|||.=+|+|.=++..+.+. + .+|+.-|+|++.++.++.+++.+++.. ++.+.+.|+..+- .....||+|=  
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID--  126 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID--  126 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE--
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE--
Confidence            45699999999999999999873 3 589999999999999999999999987 6889999987652 2457899984  


Q ss_pred             ccccccChH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         164 ESIFHMNHS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       164 ~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                        +.-+..+ .+|..+.+.++.||.|.++..
T Consensus       127 --lDPfGSp~pfldsA~~~v~~gGll~vTaT  155 (377)
T PF02005_consen  127 --LDPFGSPAPFLDSALQAVKDGGLLCVTAT  155 (377)
T ss_dssp             --E--SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred             --eCCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence              4445667 999999999999999999754

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG0822|consensus

Probab=97.22  E-value=0.0021  Score=57.47  Aligned_cols=125  Identities=13%  Similarity=0.095  Sum_probs=94.8

Q ss_pred             CCCcHHHHHHHHHHHHHHhCCCCC---CCeEEEeCCCCCHHHHHHHHh---c--CCeEEEEeCCHHHHHHHHHHHHhcCC
Q psy2408          65 SKDNFAQGSDKLSRIMINKTSITK---GQRFIDIGCGFGLSGIRLAKA---K--GCRVDGITISKFQQESAMKTAKAEGL  136 (298)
Q Consensus        65 ~~~~~~~~~~~~~~~l~~~~~~~~---~~~vLDiGcG~G~~~~~l~~~---~--~~~v~~vD~s~~~l~~a~~~~~~~~~  136 (298)
                      +.-.+.++++.+...++++..-..   -..|+-+|+|-|.+.....+.   .  ..++++++-+|+++-..+. ..-.++
T Consensus       341 D~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W  419 (649)
T KOG0822|consen  341 DPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECW  419 (649)
T ss_pred             cchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhh
Confidence            455677788888888888864332   347788999999886655443   2  3689999999998887766 344456


Q ss_pred             CCceEEEECCCCCCCCCCCCeeEEEecccccccChH----HHHHHHhhcccCCcEEEEE
Q psy2408         137 LDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS----AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       137 ~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~----~~l~~~~r~LkpgG~l~i~  191 (298)
                      .++++++..|+..++.|.++.|++++ ..|..+.|.    +.|..+.+.|||+|..+=.
T Consensus       420 ~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~  477 (649)
T KOG0822|consen  420 DNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISIPS  477 (649)
T ss_pred             cCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence            78899999999999855689999875 455555554    9999999999999875543

>KOG2198|consensus

Probab=97.22  E-value=0.0068  Score=52.05  Aligned_cols=114  Identities=17%  Similarity=0.135  Sum_probs=80.1

Q ss_pred             hCCCCCCCeEEEeCCCCCHHHHHHHHhc-C----CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC------
Q psy2408          83 KTSITKGQRFIDIGCGFGLSGIRLAKAK-G----CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP------  151 (298)
Q Consensus        83 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~----~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~------  151 (298)
                      .++++|+.+|||+++..|.-+..+.+.. .    ..|++=|.++..+........... ..++.+...|+..+|      
T Consensus       150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~  228 (375)
T KOG2198|consen  150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKD  228 (375)
T ss_pred             hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-Ccceeeecccceecccccccc
Confidence            3567899999999999999988887752 2    279999999988888877774332 234556666655443      


Q ss_pred             ---CCCCCeeEEEec------ccccc----------------cChH--HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         152 ---FDNDSFDGGWFF------ESIFH----------------MNHS--AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       152 ---~~~~~fD~V~~~------~~l~~----------------~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                         .....||-|++-      .++.+                ++..  .+|++..++||+||.++-++-+..+
T Consensus       229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp  301 (375)
T KOG2198|consen  229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP  301 (375)
T ss_pred             CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence               122468988861      11111                1122  7889999999999999998776544

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=97.16  E-value=0.0029  Score=55.30  Aligned_cols=104  Identities=17%  Similarity=0.188  Sum_probs=66.7

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD  158 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  158 (298)
                      +......++.+||-.|||. |..+..+++..|+ +|+++|.+++.++.+++.    |...-+.....++.++....+.+|
T Consensus       162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D  237 (343)
T PRK09880        162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFD  237 (343)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCC
Confidence            3444555789999999875 7777777877787 699999999988888653    321111111112222211123588


Q ss_pred             EEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +|+-     ....+..+....++|++||++++...
T Consensus       238 ~vid-----~~G~~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        238 VSFE-----VSGHPSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             EEEE-----CCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence            8753     33334567788899999999988754

>KOG2793|consensus

Probab=97.13  E-value=0.006  Score=50.06  Aligned_cols=105  Identities=17%  Similarity=0.094  Sum_probs=67.4

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHH--HHHHH--HHhcCCCCceEEEECCCCC---CCCCCCC-eeEE
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQE--SAMKT--AKAEGLLDKVNFLHGDALN---LPFDNDS-FDGG  160 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~--~a~~~--~~~~~~~~~i~~~~~d~~~---~~~~~~~-fD~V  160 (298)
                      ..+|||+|+|+|..++..+...++.|+..|+......  .....  .....+...+.+...+-..   ..+..+. +|+|
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli  166 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI  166 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence            4579999999998888888767889999887543322  22111  1111111233333332222   1111233 9999


Q ss_pred             EecccccccChH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         161 WFFESIFHMNHS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       161 ~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ++..++.+-... .++.-+...|..+|.+++...
T Consensus       167 lasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~  200 (248)
T KOG2793|consen  167 LASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYP  200 (248)
T ss_pred             EEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEe
Confidence            999999988888 888888889988886555433

>KOG2671|consensus

Probab=97.11  E-value=0.0011  Score=56.04  Aligned_cols=116  Identities=25%  Similarity=0.140  Sum_probs=84.8

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHH-------HHHHHHHhcCCCCc-eEEEECCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQE-------SAMKTAKAEGLLDK-VNFLHGDAL  148 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~-------~a~~~~~~~~~~~~-i~~~~~d~~  148 (298)
                      .-.+.+...++||+-|+|--.|||.+....+. .|+.|.|.|++-.++.       ..+.+++..|..++ +.++.+|..
T Consensus       197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~s  275 (421)
T KOG2671|consen  197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFS  275 (421)
T ss_pred             HHHHhhhhccCCCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeeccc
Confidence            33445555678999999999999999888887 8999999999988877       34566777774443 678889998


Q ss_pred             CCCCC-CCCeeEEEec------------------------ccccccCh--------H--HHHHHHhhcccCCcEEEEEeC
Q psy2408         149 NLPFD-NDSFDGGWFF------------------------ESIFHMNH--------S--AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       149 ~~~~~-~~~fD~V~~~------------------------~~l~~~~~--------~--~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ..|+. ...||.|+|-                        ....|.+.        .  ..|.=..+.|..||++++--+
T Consensus       276 n~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p  355 (421)
T KOG2671|consen  276 NPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP  355 (421)
T ss_pred             CcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence            87643 5689999981                        11123332        1  566667788899999887544

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.04  E-value=0.0013  Score=55.72  Aligned_cols=88  Identities=23%  Similarity=0.230  Sum_probs=62.8

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---  151 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---  151 (298)
                      +.+.+++.+.+.++..++|.--|.|+.+..+.+.. +++++|+|.++.+++.+++++...  .+++.+++.++.++.   
T Consensus         8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l   85 (310)
T PF01795_consen    8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYL   85 (310)
T ss_dssp             THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHH
T ss_pred             cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHH
Confidence            35566777778888999999999999999999873 689999999999999998887644  468999999988762   


Q ss_pred             --C-CCCCeeEEEeccc
Q psy2408         152 --F-DNDSFDGGWFFES  165 (298)
Q Consensus       152 --~-~~~~fD~V~~~~~  165 (298)
                        . ...++|.|++-..
T Consensus        86 ~~~~~~~~~dgiL~DLG  102 (310)
T PF01795_consen   86 KELNGINKVDGILFDLG  102 (310)
T ss_dssp             HHTTTTS-EEEEEEE-S
T ss_pred             HHccCCCccCEEEEccc
Confidence              2 3357888886433

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=97.01  E-value=0.016  Score=50.76  Aligned_cols=99  Identities=21%  Similarity=0.184  Sum_probs=69.3

Q ss_pred             CCCCeEEEeCCCC-CHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC-C----C-CCCC-CCe
Q psy2408          87 TKGQRFIDIGCGF-GLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL-N----L-PFDN-DSF  157 (298)
Q Consensus        87 ~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~-~----~-~~~~-~~f  157 (298)
                      .++.+|+=+|||+ |.++..+++..| .+|+++|.++..++.|++....       ..+..... .    . .... ..+
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-------~~~~~~~~~~~~~~~~~~t~g~g~  239 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-------DVVVNPSEDDAGAEILELTGGRGA  239 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-------eEeecCccccHHHHHHHHhCCCCC
Confidence            4445999999998 888888888766 5899999999999999885421       11111111 0    0 1112 369


Q ss_pred             eEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         158 DGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       158 D~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      |+|+=..     ..+.++..+.++++|+|.+++.......
T Consensus       240 D~vie~~-----G~~~~~~~ai~~~r~gG~v~~vGv~~~~  274 (350)
T COG1063         240 DVVIEAV-----GSPPALDQALEALRPGGTVVVVGVYGGE  274 (350)
T ss_pred             CEEEECC-----CCHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence            9886433     3447889999999999999998766444

>KOG2918|consensus

Probab=96.97  E-value=0.12  Score=43.47  Aligned_cols=175  Identities=13%  Similarity=0.182  Sum_probs=97.8

Q ss_pred             ceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHH
Q psy2408          54 HMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK---GCRVDGITISKFQQESAMKT  130 (298)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~l~~a~~~  130 (298)
                      .++.|||..       .-+.+..+..++...  .....|+.+|||.-.+...|....   ...++=||.++.....+. .
T Consensus        62 ~inRGy~~R-------~~aI~~~v~~Fl~~~--~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~-i  131 (335)
T KOG2918|consen   62 EINRGYWAR-------TMAIRHAVRAFLEQT--DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKIS-I  131 (335)
T ss_pred             eecchhhHH-------HHHHHHHHHHHHHhc--CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHh-h
Confidence            346778875       234556666666663  456799999999988887777653   246777777765555541 1


Q ss_pred             HHhcCC---------------------CCceEEEECCCCCCC----------CCCCCeeEEEecccccccChH---HHHH
Q psy2408         131 AKAEGL---------------------LDKVNFLHGDALNLP----------FDNDSFDGGWFFESIFHMNHS---AALN  176 (298)
Q Consensus       131 ~~~~~~---------------------~~~i~~~~~d~~~~~----------~~~~~fD~V~~~~~l~~~~~~---~~l~  176 (298)
                      .....+                     .++...+..|+.++.          ...+-.-++++-.++.+++..   .+++
T Consensus       132 k~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~  211 (335)
T KOG2918|consen  132 KRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIK  211 (335)
T ss_pred             cccCchhhhhhccccccccccCcceeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHH
Confidence            111100                     012233334444321          111233455566777778766   6666


Q ss_pred             HHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhh-----cccCCCCcchHHHHHHhCCCcEEEEEeC
Q psy2408         177 EARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKN-----IHSNFILVEHYPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       177 ~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  240 (298)
                      .+.......+.+..-.+...+...  ......+...     ....+.+.+..+.-+.++||+-+...++
T Consensus       212 w~~~~F~~a~fv~YEQi~~~D~Fg--~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm  278 (335)
T KOG2918|consen  212 WAASKFENAHFVNYEQINPNDRFG--KVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM  278 (335)
T ss_pred             HHHHhCCcccEEEEeccCCCChHH--HHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence            666666655554443333222221  2222222221     1234667888888999999998887663

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=96.90  E-value=0.0004  Score=48.88  Aligned_cols=86  Identities=17%  Similarity=0.209  Sum_probs=43.5

Q ss_pred             CeeEEEeccccccc----ChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHH
Q psy2408         156 SFDGGWFFESIFHM----NHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLN  228 (298)
Q Consensus       156 ~fD~V~~~~~l~~~----~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  228 (298)
                      .||+|+|..+.-++    .|.   .+++.+++.|+|||.|++.--.+................ ...--+.++.+...|.
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n-~~~i~lrP~~F~~~L~   79 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIREN-YKSIKLRPDQFEDYLL   79 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHH-HHH----GGGHHHHHT
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhH-HhceEEChHHHHHHHH
Confidence            48999998887654    344   899999999999999999644432211100000111111 1111245667888887


Q ss_pred             h--CCCcEEEEEeCCC
Q psy2408         229 K--SGFELIKIDDITS  242 (298)
Q Consensus       229 ~--~Gf~~~~~~~~~~  242 (298)
                      +  .||...+......
T Consensus        80 ~~evGF~~~e~~~~~~   95 (110)
T PF06859_consen   80 EPEVGFSSVEELGVPE   95 (110)
T ss_dssp             STTT---EEEEE----
T ss_pred             hcccceEEEEEcccCC
Confidence            7  5999887554443

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.88  E-value=0.012  Score=56.15  Aligned_cols=104  Identities=16%  Similarity=0.114  Sum_probs=62.2

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-------------CCeEEEEeCCH---HHHHHHH-----------HHHHh-----c
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-------------GCRVDGITISK---FQQESAM-----------KTAKA-----E  134 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-------------~~~v~~vD~s~---~~l~~a~-----------~~~~~-----~  134 (298)
                      .+.-+|||+|-|+|.......+..             ..++++++..+   +.+..+.           .....     .
T Consensus        56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  135 (662)
T PRK01747         56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP  135 (662)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence            345799999999998766555322             24788999533   3333322           21111     1


Q ss_pred             CC------CC--ceEEEECCCCCC-CCCCCCeeEEEeccccc-ccChH---HHHHHHhhcccCCcEEEE
Q psy2408         135 GL------LD--KVNFLHGDALNL-PFDNDSFDGGWFFESIF-HMNHS---AALNEARRVLKSGSILTL  190 (298)
Q Consensus       135 ~~------~~--~i~~~~~d~~~~-~~~~~~fD~V~~~~~l~-~~~~~---~~l~~~~r~LkpgG~l~i  190 (298)
                      |+      ..  ++++..+|+.+. +--...+|+++.-..-- .-++.   .+++.+.++++|||.+.-
T Consensus       136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t  204 (662)
T PRK01747        136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT  204 (662)
T ss_pred             CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence            11      01  344666787653 21125699998643221 22333   999999999999998764

>PRK11524 putative methyltransferase; Provisional

Probab=96.88  E-value=0.0055  Score=52.07  Aligned_cols=58  Identities=19%  Similarity=0.196  Sum_probs=49.6

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA  133 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~  133 (298)
                      ..+.+.++.... .+|+.|||.-||+|..+....+ .+.+++|+|++++.++.|+.++..
T Consensus       195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~-lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKA-SGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHh
Confidence            567777777665 6899999999999999877666 799999999999999999999753

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.77  E-value=0.022  Score=49.03  Aligned_cols=100  Identities=24%  Similarity=0.263  Sum_probs=79.7

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC-CCCeeEEEecccc
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD-NDSFDGGWFFESI  166 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l  166 (298)
                      +.+|||.=||+|.=++.++...+. +++.-|+|+..++.+++++..+.. .+...++.|+..+-.. ...||+|=    +
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~ID----i  127 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVID----I  127 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEe----c
Confidence            679999999999999999887665 999999999999999999987733 3466677777665222 36788872    4


Q ss_pred             cccChH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         167 FHMNHS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .-+..| .++..+.+.++.+|.+.++..
T Consensus       128 DPFGSPaPFlDaA~~s~~~~G~l~vTAT  155 (380)
T COG1867         128 DPFGSPAPFLDAALRSVRRGGLLCVTAT  155 (380)
T ss_pred             CCCCCCchHHHHHHHHhhcCCEEEEEec
Confidence            445667 999999999999999999743

>KOG1596|consensus

Probab=96.75  E-value=0.006  Score=49.12  Aligned_cols=117  Identities=15%  Similarity=0.100  Sum_probs=77.2

Q ss_pred             HHHHHHHHHH---HhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC
Q psy2408          72 GSDKLSRIMI---NKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD  146 (298)
Q Consensus        72 ~~~~~~~~l~---~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d  146 (298)
                      ....++..|+   +.+.++|+.+||-+|+++|.....+....  ..-|++|+.|...-.....-+++.   .||-.+.-|
T Consensus       137 frSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiED  213 (317)
T KOG1596|consen  137 FRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIED  213 (317)
T ss_pred             HHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeecc
Confidence            4455555553   55678999999999999999988888863  457999999875433333222222   567778888


Q ss_pred             CCCCC---CCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCC
Q psy2408         147 ALNLP---FDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       147 ~~~~~---~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +....   +.-.-.|+|++- +-  -++.  .+.-++.-.||+||-++|+...
T Consensus       214 ArhP~KYRmlVgmVDvIFaD-va--qpdq~RivaLNA~~FLk~gGhfvisika  263 (317)
T KOG1596|consen  214 ARHPAKYRMLVGMVDVIFAD-VA--QPDQARIVALNAQYFLKNGGHFVISIKA  263 (317)
T ss_pred             CCCchheeeeeeeEEEEecc-CC--CchhhhhhhhhhhhhhccCCeEEEEEec
Confidence            87631   112345666542 11  2333  5555788899999999987554

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.72  E-value=0.0058  Score=49.85  Aligned_cols=55  Identities=25%  Similarity=0.270  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK  129 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~  129 (298)
                      ...+.+.++.... .+|..|||.-||+|..+....+ .+.+.+|+|+++...+.|++
T Consensus       177 P~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~-l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  177 PVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEE-LGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHH-TT-EEEEEESSHHHHHHHHH
T ss_pred             CHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHH-cCCeEEEEeCCHHHHHHhcC
Confidence            3566677776664 6789999999999999877766 79999999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.64  E-value=0.023  Score=50.58  Aligned_cols=108  Identities=24%  Similarity=0.276  Sum_probs=71.5

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC-CCC-C-CC-CCC
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD-ALN-L-PF-DND  155 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d-~~~-~-~~-~~~  155 (298)
                      ....+.++.+||.+|||. |..+..+++..+. +++++|.+++.++.+++..   +. ..+.....+ ... + .+ +..
T Consensus       178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~  253 (386)
T cd08283         178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGR  253 (386)
T ss_pred             hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCC
Confidence            455677889999999987 8888888887786 5999999999988887652   11 111111111 100 1 11 234


Q ss_pred             CeeEEEecccc-----------c----ccChH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         156 SFDGGWFFESI-----------F----HMNHS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       156 ~fD~V~~~~~l-----------~----~~~~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .+|+|+-.-.-           .    -.+++ ..+.++.++++|+|++++...
T Consensus       254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence            68988764211           1    11344 788999999999999988743

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK13699 putative methylase; Provisional

Probab=96.57  E-value=0.014  Score=47.73  Aligned_cols=59  Identities=15%  Similarity=0.117  Sum_probs=48.7

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE  134 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~  134 (298)
                      ..+.+.++.... .+|..|||.-||+|..+....+ .+.+++|+|++++..+.+.+++...
T Consensus       150 ~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~-~~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        150 VTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQ-SGRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHH
Confidence            456666666544 5789999999999999877766 7899999999999999999998653

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=0.019  Score=49.36  Aligned_cols=69  Identities=14%  Similarity=0.070  Sum_probs=54.6

Q ss_pred             CCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHHhc
Q psy2408          66 KDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK---------GCRVDGITISKFQQESAMKTAKAE  134 (298)
Q Consensus        66 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~~vD~s~~~l~~a~~~~~~~  134 (298)
                      ...+++......-.+++.++.+....++|+|.|+|.++..+.+..         .+++..|++|++..+.=++.++..
T Consensus        55 s~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          55 SQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            445566666667777777777777899999999999998887642         479999999999988877777654

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=96.45  E-value=0.051  Score=47.20  Aligned_cols=96  Identities=20%  Similarity=0.248  Sum_probs=64.9

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEE
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGG  160 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V  160 (298)
                      ....+.++.+||-.|+|. |..+..+++..|+++++++.+++.++.+++.    |..   .++  +..+.  ..+.+|++
T Consensus       159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~----Ga~---~vi--~~~~~--~~~~~d~~  227 (329)
T TIGR02822       159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL----GAA---SAG--GAYDT--PPEPLDAA  227 (329)
T ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh----CCc---eec--ccccc--CcccceEE
Confidence            446678899999999864 6666677777788999999999887777654    332   111  11111  12457876


Q ss_pred             EecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         161 WFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       161 ~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +.....     ...+....++|+++|++++...
T Consensus       228 i~~~~~-----~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       228 ILFAPA-----GGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             EECCCc-----HHHHHHHHHhhCCCcEEEEEec
Confidence            543221     2567788899999999988654

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>KOG1253|consensus

Probab=96.43  E-value=0.0032  Score=55.87  Aligned_cols=103  Identities=24%  Similarity=0.259  Sum_probs=83.9

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC----CCCCCCeeEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-G-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL----PFDNDSFDGG  160 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V  160 (298)
                      .++.+|||.=|++|.-++..+... + .++++-|.++..+...+++++.+++.+.+.....|+..+    +.....||+|
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI  187 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI  187 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence            456799999999999999999875 3 489999999999999999999888877788888887665    2335789988


Q ss_pred             EecccccccChH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         161 WFFESIFHMNHS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       161 ~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      =    |.-...+ .+|..+.+.++.||.|+++..
T Consensus       188 D----LDPyGs~s~FLDsAvqav~~gGLL~vT~T  217 (525)
T KOG1253|consen  188 D----LDPYGSPSPFLDSAVQAVRDGGLLCVTCT  217 (525)
T ss_pred             e----cCCCCCccHHHHHHHHHhhcCCEEEEEec
Confidence            4    2333445 999999999999999999754

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=96.37  E-value=0.09  Score=40.74  Aligned_cols=132  Identities=17%  Similarity=0.093  Sum_probs=79.5

Q ss_pred             eCCCCCHHHHHHHHhcC--Ce--EEEEeCCHHHHHHHH---HHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEEec
Q psy2408          95 IGCGFGLSGIRLAKAKG--CR--VDGITISKFQQESAM---KTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGWFF  163 (298)
Q Consensus        95 iGcG~G~~~~~l~~~~~--~~--v~~vD~s~~~l~~a~---~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~  163 (298)
                      ||=|.=.++..|++..+  ..  .|..|..++..+...   ..+....-.+-.-....|+.++.    ...+.||.|+.+
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN   82 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN   82 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence            55566667777777643  34  444554444433332   22222211111223455777762    246889999976


Q ss_pred             ccccc---------c---ChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHh
Q psy2408         164 ESIFH---------M---NHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNK  229 (298)
Q Consensus       164 ~~l~~---------~---~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  229 (298)
                      +.---         +   ...  .+++.+..+|+++|.+.|+-....+                    ++.-.++.+.++
T Consensus        83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--------------------y~~W~i~~lA~~  142 (166)
T PF10354_consen   83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--------------------YDSWNIEELAAE  142 (166)
T ss_pred             CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--------------------CccccHHHHHHh
Confidence            54322         1   012  8899999999999999997443211                    233467788899


Q ss_pred             CCCcEEEEEeCCCCccc
Q psy2408         230 SGFELIKIDDITSHVMP  246 (298)
Q Consensus       230 ~Gf~~~~~~~~~~~~~~  246 (298)
                      +||.+++...+....++
T Consensus       143 ~gl~l~~~~~F~~~~yp  159 (166)
T PF10354_consen  143 AGLVLVRKVPFDPSDYP  159 (166)
T ss_pred             cCCEEEEEecCCHHHCC
Confidence            99999988877766554

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.37  E-value=0.014  Score=53.31  Aligned_cols=96  Identities=22%  Similarity=0.226  Sum_probs=67.4

Q ss_pred             CCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-----------C--C-
Q psy2408          87 TKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-----------L--P-  151 (298)
Q Consensus        87 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-----------~--~-  151 (298)
                      .++.+||-+|||. |..+..++...|+.|+++|.++..++.++..    +    ..++..|..+           +  + 
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----G----a~~v~v~~~e~g~~~~gYa~~~s~~~  233 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----G----AEFLELDFKEEGGSGDGYAKVMSEEF  233 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEeccccccccccccceeecCHHH
Confidence            3568999999997 7778888887899999999999987777652    2    2333333211           0  0 


Q ss_pred             -------CC--CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEE
Q psy2408         152 -------FD--NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTL  190 (298)
Q Consensus       152 -------~~--~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i  190 (298)
                             ++  -..+|+|+..-.+.--+.| -+.++..+.+|||+.++-
T Consensus       234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence                   11  2469999877656555555 577888999999998663

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG2920|consensus

Probab=96.26  E-value=0.0041  Score=51.55  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=64.3

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHH-------HH----HHhcCCCCceEEEECCCCCCCC-CC
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAM-------KT----AKAEGLLDKVNFLHGDALNLPF-DN  154 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~-------~~----~~~~~~~~~i~~~~~d~~~~~~-~~  154 (298)
                      -.+++|||+|||+|...+.........+...|.|...+..-.       -.    ..+..  .-..+.+.+..+..+ ..
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~--~~~~i~~s~l~dg~~~~t  192 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENH--KVDEILNSLLSDGVFNHT  192 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcc--cceeccccccccchhhhc
Confidence            468899999999999988888743478888888877662110       00    01110  112223331112111 12


Q ss_pred             C--CeeEEEecccccccChH-HH-HHHHhhcccCCcEEEEE
Q psy2408         155 D--SFDGGWFFESIFHMNHS-AA-LNEARRVLKSGSILTLT  191 (298)
Q Consensus       155 ~--~fD~V~~~~~l~~~~~~-~~-l~~~~r~LkpgG~l~i~  191 (298)
                      +  .||+|.++.++...... .. .......+++.|.++..
T Consensus       193 ~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a  233 (282)
T KOG2920|consen  193 ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA  233 (282)
T ss_pred             cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence            3  79999999999887777 44 55666677888877664

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=96.25  E-value=0.022  Score=49.57  Aligned_cols=101  Identities=20%  Similarity=0.192  Sum_probs=65.4

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC---CC-C-CC
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL---NL-P-FD  153 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~---~~-~-~~  153 (298)
                      +....+.++.+||=+|+|. |..+..+++..|++ |++++.+++..+.+++.    |..   .++...-.   .+ . ..
T Consensus       156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~---~~i~~~~~~~~~~~~~~~  228 (339)
T cd08239         156 LRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GAD---FVINSGQDDVQEIRELTS  228 (339)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEEcCCcchHHHHHHHhC
Confidence            3556677899999998875 66667777777888 99999999888777543    321   12211100   11 0 12


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ...+|+|+-.     ......+....+.|+++|++++...
T Consensus       229 ~~~~d~vid~-----~g~~~~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         229 GAGADVAIEC-----SGNTAARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             CCCCCEEEEC-----CCCHHHHHHHHHHhhcCCEEEEEcC
Confidence            2468988632     2233556677889999999987654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08230 glucose_DH Glucose dehydrogenase

Probab=96.22  E-value=0.04  Score=48.37  Aligned_cols=98  Identities=18%  Similarity=0.124  Sum_probs=62.1

Q ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeC---CHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEE
Q psy2408          86 ITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITI---SKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGW  161 (298)
Q Consensus        86 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~---s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~  161 (298)
                      ..++.+||-+|+|. |.++..+++..|+++++++.   ++..++.+++.    |.. .+.....+..+.. ..+.+|+|+
T Consensus       170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~----Ga~-~v~~~~~~~~~~~-~~~~~d~vi  243 (355)
T cd08230         170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL----GAT-YVNSSKTPVAEVK-LVGEFDLII  243 (355)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc----CCE-EecCCccchhhhh-hcCCCCEEE
Confidence            46788999999875 77777788877889999987   66666666532    321 1111011111100 124688876


Q ss_pred             ecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         162 FFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       162 ~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      -.     ...+..+....++|+++|++++....
T Consensus       244 d~-----~g~~~~~~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         244 EA-----TGVPPLAFEALPALAPNGVVILFGVP  271 (355)
T ss_pred             EC-----cCCHHHHHHHHHHccCCcEEEEEecC
Confidence            43     23335778888999999998876543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=96.21  E-value=0.1  Score=45.20  Aligned_cols=100  Identities=23%  Similarity=0.302  Sum_probs=66.6

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCCCC
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFDND  155 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~  155 (298)
                      ....+.++.+||..|+|. |..+..+++..|.+|++++.++...+.+++.    ++.   .++...-...     ....+
T Consensus       159 ~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~  231 (338)
T cd08254         159 RAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL----GAD---EVLNSLDDSPKDKKAAGLGG  231 (338)
T ss_pred             hccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----CCC---EEEcCCCcCHHHHHHHhcCC
Confidence            334467888999988874 7788888887889999999999888777542    321   1111110110     12345


Q ss_pred             CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .+|+|+.+..     ....+.++.+.|+++|.++....
T Consensus       232 ~~D~vid~~g-----~~~~~~~~~~~l~~~G~~v~~g~  264 (338)
T cd08254         232 GFDVIFDFVG-----TQPTFEDAQKAVKPGGRIVVVGL  264 (338)
T ss_pred             CceEEEECCC-----CHHHHHHHHHHhhcCCEEEEECC
Confidence            7898864321     22577888999999999887644

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG1562|consensus

Probab=96.19  E-value=0.017  Score=48.08  Aligned_cols=108  Identities=18%  Similarity=0.052  Sum_probs=78.2

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc--CC-CCceEEEECCCCCC--CCCCCCeeEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAE--GL-LDKVNFLHGDALNL--PFDNDSFDGG  160 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~--~~-~~~i~~~~~d~~~~--~~~~~~fD~V  160 (298)
                      ...++||-||.|.|......+++. -..+..+|++...++..+..++..  +. .+++.+..+|...+  ..+.++||+|
T Consensus       120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi  199 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI  199 (337)
T ss_pred             CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence            556799999999999998888863 237899999999988888876632  21 24688888887654  3446899999


Q ss_pred             EecccccccCh--H---HHHHHHhhcccCCcEEEEEeCC
Q psy2408         161 WFFESIFHMNH--S---AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       161 ~~~~~l~~~~~--~---~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +.-..=--.+.  .   .++.-+.+.||++|+++...-+
T Consensus       200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec  238 (337)
T KOG1562|consen  200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC  238 (337)
T ss_pred             EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence            85322111121  1   7788899999999998886533

>KOG0022|consensus

Probab=96.16  E-value=0.12  Score=43.61  Aligned_cols=104  Identities=19%  Similarity=0.243  Sum_probs=69.9

Q ss_pred             HHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCCC-C-----
Q psy2408          80 MINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DALN-L-----  150 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~-~-----  150 (298)
                      ...-.++.||.+|.-+|+|. |.....-++..|+ +++|+|++++-.+.|++.-.       .++++. |..+ +     
T Consensus       184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGa-------Te~iNp~d~~~~i~evi~  256 (375)
T KOG0022|consen  184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGA-------TEFINPKDLKKPIQEVII  256 (375)
T ss_pred             hhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCc-------ceecChhhccccHHHHHH
Confidence            34556678999999999997 5555555565554 89999999999999887622       223322 3333 0     


Q ss_pred             CCCCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeCCC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDLPL  195 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~~  195 (298)
                      .+.++.+|.-     ++.+.+...|+++....+.| |.-++.....
T Consensus       257 EmTdgGvDys-----fEc~G~~~~m~~al~s~h~GwG~sv~iGv~~  297 (375)
T KOG0022|consen  257 EMTDGGVDYS-----FECIGNVSTMRAALESCHKGWGKSVVIGVAA  297 (375)
T ss_pred             HHhcCCceEE-----EEecCCHHHHHHHHHHhhcCCCeEEEEEecC
Confidence            1234667754     45556667888888888888 8877665543

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=96.14  E-value=0.03  Score=49.22  Aligned_cols=101  Identities=17%  Similarity=0.173  Sum_probs=65.9

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CC
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PF  152 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~  152 (298)
                      .....+.++.+||-.|||. |..+..+++..|+ +|+++|.++...+.+++.    |..   .++...-.+.      ..
T Consensus       169 ~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~i~~~~  241 (358)
T TIGR03451       169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GAT---HTVNSSGTDPVEAIRALT  241 (358)
T ss_pred             HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEEcCCCcCHHHHHHHHh
Confidence            3445667899999999875 6777777887787 499999999888887543    321   1222111110      01


Q ss_pred             CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ....+|+|+-     ....+..+....+.++++|++++...
T Consensus       242 ~~~g~d~vid-----~~g~~~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       242 GGFGADVVID-----AVGRPETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CCCCCCEEEE-----CCCCHHHHHHHHHHhccCCEEEEECC
Confidence            2235888863     23334566777889999999988654

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=96.14  E-value=0.012  Score=49.58  Aligned_cols=105  Identities=23%  Similarity=0.249  Sum_probs=71.5

Q ss_pred             CeEEEeCCCCCHHHHHHHHhc---------------------CCeEEEEeCCHHH--HHHHHHHHHhc------------
Q psy2408          90 QRFIDIGCGFGLSGIRLAKAK---------------------GCRVDGITISKFQ--QESAMKTAKAE------------  134 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~~---------------------~~~v~~vD~s~~~--l~~a~~~~~~~------------  134 (298)
                      .+||.||.|.|.=...++...                     ...++.||+.+..  +......+...            
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            699999999986555554322                     1389999997643  44444444333            


Q ss_pred             -CC-C--CceEEEECCCCCCCCCC-------CCeeEEEeccccccc-----ChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         135 -GL-L--DKVNFLHGDALNLPFDN-------DSFDGGWFFESIFHM-----NHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       135 -~~-~--~~i~~~~~d~~~~~~~~-------~~fD~V~~~~~l~~~-----~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                       .. +  -++.|.+.|+..+..++       ...|+|...+++.-+     +.. ++|.++...++||..|+|++.+
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp  244 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP  244 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence             00 1  15789999998874321       257888877776432     233 9999999999999999998765

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=96.12  E-value=0.003  Score=47.67  Aligned_cols=130  Identities=18%  Similarity=0.155  Sum_probs=76.3

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCce-EEEECCCCC-CCCCCCCeeEEEecccc
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKV-NFLHGDALN-LPFDNDSFDGGWFFESI  166 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i-~~~~~d~~~-~~~~~~~fD~V~~~~~l  166 (298)
                      +++++-+|+..-+.-....+...+++..|+.++--++.   .+.     +++ ++...|+.+ +.--.++||.+.+.+++
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~---~~~-----dr~ssi~p~df~~~~~~y~~~fD~~as~~si   73 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQE---EFR-----DRLSSILPVDFAKNWQKYAGSFDFAASFSSI   73 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCc---ccc-----cccccccHHHHHHHHHHhhccchhhheechh
Confidence            56888999987666444444223478888876411110   000     111 112222221 11124789999999999


Q ss_pred             cccC--------hH----HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcE
Q psy2408         167 FHMN--------HS----AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFEL  234 (298)
Q Consensus       167 ~~~~--------~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  234 (298)
                      +|+.        +|    ..+.++.++|||||.|++..+.-.+...           +...+.+....+..++  .||+.
T Consensus        74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~-----------fNahRiYg~~rL~mm~--~gfe~  140 (177)
T PF03269_consen   74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQ-----------FNAHRIYGPIRLAMMF--YGFEW  140 (177)
T ss_pred             ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceE-----------EecceeecHhHHHHHh--CCcEE
Confidence            9974        22    8999999999999999998776443222           1122334444455444  58888


Q ss_pred             EEEEe
Q psy2408         235 IKIDD  239 (298)
Q Consensus       235 ~~~~~  239 (298)
                      +....
T Consensus       141 i~tfs  145 (177)
T PF03269_consen  141 IDTFS  145 (177)
T ss_pred             Eeeec
Confidence            77543

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=96.10  E-value=0.027  Score=49.82  Aligned_cols=101  Identities=21%  Similarity=0.263  Sum_probs=66.0

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCC
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFD  153 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~  153 (298)
                      .....+.++.+||=.|+|. |..+..+++..|+ +|+++|.++..++.+++.    |..   .++..+-.++     ...
T Consensus       184 ~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~i~~~~  256 (371)
T cd08281         184 VNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GAT---ATVNAGDPNAVEQVRELT  256 (371)
T ss_pred             HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCc---eEeCCCchhHHHHHHHHh
Confidence            4556678899999999875 6677777777788 699999999988877643    321   1222111111     011


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .+.+|+|+-.     ......+....+.|+++|++++...
T Consensus       257 ~~g~d~vid~-----~G~~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         257 GGGVDYAFEM-----AGSVPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             CCCCCEEEEC-----CCChHHHHHHHHHHhcCCEEEEEcc
Confidence            2368888632     2233567778889999999887644

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PHA01634 hypothetical protein

Probab=96.08  E-value=0.052  Score=39.34  Aligned_cols=47  Identities=9%  Similarity=-0.060  Sum_probs=40.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE  134 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~  134 (298)
                      .+.+|+|||.+-|..+++++.....+|+++++++...+..++..+..
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n   74 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF   74 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence            57899999999999999998853458999999999999998877644

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=96.02  E-value=0.016  Score=42.76  Aligned_cols=86  Identities=23%  Similarity=0.233  Sum_probs=60.7

Q ss_pred             CCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----C-CCCCCeeEEEecccccccCh
Q psy2408          98 GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----P-FDNDSFDGGWFFESIFHMNH  171 (298)
Q Consensus        98 G~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~fD~V~~~~~l~~~~~  171 (298)
                      |.|..+..+++..|++|+++|.++..++.+++.    |.   ..++..+-.++     . .+...+|+|+-+     ...
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~-----~g~   68 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDC-----VGS   68 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE---SEEEETTTSSHHHHHHHHTTTSSEEEEEES-----SSS
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc---cccccccccccccccccccccccceEEEEe-----cCc
Confidence            347788888888899999999999988888764    21   22333332221     1 233579998643     334


Q ss_pred             HHHHHHHhhcccCCcEEEEEeCCC
Q psy2408         172 SAALNEARRVLKSGSILTLTDLPL  195 (298)
Q Consensus       172 ~~~l~~~~r~LkpgG~l~i~~~~~  195 (298)
                      ...++....+|+|+|++++.....
T Consensus        69 ~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   69 GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             HHHHHHHHHHhccCCEEEEEEccC
Confidence            578899999999999999987664

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=95.86  E-value=0.025  Score=47.16  Aligned_cols=77  Identities=17%  Similarity=0.135  Sum_probs=49.9

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHHhcC-----CCCceEEEECCCCCCCCCC
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAK---------GCRVDGITISKFQQESAMKTAKAEG-----LLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~---------~~~v~~vD~s~~~l~~a~~~~~~~~-----~~~~i~~~~~d~~~~~~~~  154 (298)
                      ..+|+|+|+|+|.++..+.+..         ..+++.||+|+.+.+.-++++....     ...++.. ..++.+.|   
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p---   94 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP---   94 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence            4799999999999999988752         2589999999999888888765421     2223444 23333333   


Q ss_pred             CCeeEEEecccccccC
Q psy2408         155 DSFDGGWFFESIFHMN  170 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~  170 (298)
                       ..-+|++++++..+|
T Consensus        95 -~~~~iiaNE~~DAlP  109 (252)
T PF02636_consen   95 -FPGFIIANELFDALP  109 (252)
T ss_dssp             -CCEEEEEESSGGGS-
T ss_pred             -CCEEEEEeeehhcCc
Confidence             345677777776665

; PDB: 4F3N_A 1ZKD_B.

>KOG2539|consensus

Probab=95.79  E-value=0.029  Score=49.75  Aligned_cols=113  Identities=12%  Similarity=0.089  Sum_probs=72.0

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC--CCCC-CCCeeEEE
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN--LPFD-NDSFDGGW  161 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~-~~~fD~V~  161 (298)
                      .++.++|+|+|.|.-.-.+...   ....++.||.|..|+...........-...+.+...-+..  +|.+ .+.||+|+
T Consensus       200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi  279 (491)
T KOG2539|consen  200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI  279 (491)
T ss_pred             ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence            4568999999976543333321   2457999999999999988877651100111111101111  2332 45699999


Q ss_pred             ecccccccChH----HHHHHHh-hcccCCcEEEEEeCCCCCCCC
Q psy2408         162 FFESIFHMNHS----AALNEAR-RVLKSGSILTLTDLPLLSVSK  200 (298)
Q Consensus       162 ~~~~l~~~~~~----~~l~~~~-r~LkpgG~l~i~~~~~~~~~~  200 (298)
                      +.+.++++.+.    ...++++ +..++|+.+++.+........
T Consensus       280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e  323 (491)
T KOG2539|consen  280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLE  323 (491)
T ss_pred             eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccchh
Confidence            99999999876    4445544 567899999998877555433

>PTZ00357 methyltransferase; Provisional

Probab=95.72  E-value=0.1  Score=48.68  Aligned_cols=97  Identities=13%  Similarity=0.036  Sum_probs=66.2

Q ss_pred             CeEEEeCCCCCHHHHHHHHh---c--CCeEEEEeCCHHHHHHHHHHH-HhcCC-------CCceEEEECCCCCCCCCC--
Q psy2408          90 QRFIDIGCGFGLSGIRLAKA---K--GCRVDGITISKFQQESAMKTA-KAEGL-------LDKVNFLHGDALNLPFDN--  154 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~---~--~~~v~~vD~s~~~l~~a~~~~-~~~~~-------~~~i~~~~~d~~~~~~~~--  154 (298)
                      ..|+-+|+|-|.+.....+.   .  ..++++|+-++..+.....+. ....+       .++++++..|+..+..+.  
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            36899999999886665543   2  358999999966544443332 22233       245899999999984321  


Q ss_pred             ---------CCeeEEEecccccccChH----HHHHHHhhcccC----CcE
Q psy2408         155 ---------DSFDGGWFFESIFHMNHS----AALNEARRVLKS----GSI  187 (298)
Q Consensus       155 ---------~~fD~V~~~~~l~~~~~~----~~l~~~~r~Lkp----gG~  187 (298)
                               +++|+||+ +.|-.+.|.    +.|..+.+.||+    +|.
T Consensus       782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                     36999886 455555554    888888888876    675

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.72  E-value=0.14  Score=44.70  Aligned_cols=96  Identities=13%  Similarity=0.088  Sum_probs=61.0

Q ss_pred             CCCCCCCeEEEeCCCC-CHHHHHHHHh-c-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEE
Q psy2408          84 TSITKGQRFIDIGCGF-GLSGIRLAKA-K-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGG  160 (298)
Q Consensus        84 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V  160 (298)
                      ..+.++.+||-+|||. |.++..+++. . +.+|+++|.++..++.++.    .+.   . .. .+  ++. ....+|+|
T Consensus       159 ~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~-~~-~~--~~~-~~~g~d~v  226 (341)
T cd08237         159 IAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---T-YL-ID--DIP-EDLAVDHA  226 (341)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---e-ee-hh--hhh-hccCCcEE
Confidence            3457899999999875 6666666664 4 4689999999988887764    111   1 11 11  111 11247887


Q ss_pred             EecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         161 WFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       161 ~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +-.-.  .-..+..+....++|+++|++++...
T Consensus       227 iD~~G--~~~~~~~~~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         227 FECVG--GRGSQSAINQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             EECCC--CCccHHHHHHHHHhCcCCcEEEEEee
Confidence            63221  10123678888999999999987654

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>KOG3924|consensus

Probab=95.71  E-value=0.082  Score=45.95  Aligned_cols=126  Identities=17%  Similarity=0.190  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHH---HH----HHHhcCC-CCce
Q psy2408          70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESA---MK----TAKAEGL-LDKV  140 (298)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a---~~----~~~~~~~-~~~i  140 (298)
                      ++.+.+....+.+.+.+.+++...|+|+|.|.....++...++ .-.|+++...--+.+   .+    ..+-.|. +..+
T Consensus       174 GE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~  253 (419)
T KOG3924|consen  174 GETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKI  253 (419)
T ss_pred             hhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCce
Confidence            3445666777888999999999999999999999988885443 455666543222222   22    2222232 3457


Q ss_pred             EEEECCCCCCCC---CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         141 NFLHGDALNLPF---DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       141 ~~~~~d~~~~~~---~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      ..+++++.....   -....++|+++.+.. -++. -=+.++..-+++|-+++-...-..
T Consensus       254 ~~i~gsf~~~~~v~eI~~eatvi~vNN~~F-dp~L~lr~~eil~~ck~gtrIiS~~~L~~  312 (419)
T KOG3924|consen  254 ETIHGSFLDPKRVTEIQTEATVIFVNNVAF-DPELKLRSKEILQKCKDGTRIISSKPLVP  312 (419)
T ss_pred             eecccccCCHHHHHHHhhcceEEEEecccC-CHHHHHhhHHHHhhCCCcceEeccccccc
Confidence            788888766321   124578888776653 2233 444488888899999877665544

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.70  E-value=0.031  Score=39.27  Aligned_cols=31  Identities=42%  Similarity=0.565  Sum_probs=26.2

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI  119 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~  119 (298)
                      +.....|||||.|.+...|.+ -|..-.|+|.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~-EGy~G~GiD~   88 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNS-EGYPGWGIDA   88 (112)
T ss_pred             CCCceEEccCCchHHHHHHHh-CCCCcccccc
Confidence            455899999999999888877 5778889987

; GO: 0008168 methyltransferase activity

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=95.69  E-value=0.035  Score=46.98  Aligned_cols=101  Identities=21%  Similarity=0.217  Sum_probs=64.8

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCCC-C-C-CCC
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DALN-L-P-FDN  154 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~-~~~  154 (298)
                      +......++.+||-+|+|. |..+..+++..|++ |+++|.++..++.+++.    +..   .++.. +... + . ...
T Consensus       113 l~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~  185 (280)
T TIGR03366       113 LEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT---ALAEPEVLAERQGGLQNG  185 (280)
T ss_pred             HHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc---EecCchhhHHHHHHHhCC
Confidence            3444556889999999875 66777777767876 99999999888777653    321   11111 1000 0 0 112


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ..+|+|+-     ....+..+..+.+.|+|+|++++...
T Consensus       186 ~g~d~vid-----~~G~~~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       186 RGVDVALE-----FSGATAAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             CCCCEEEE-----CCCChHHHHHHHHHhcCCCEEEEecc
Confidence            45888753     23334677788899999999987654

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>KOG2078|consensus

Probab=95.64  E-value=0.011  Score=51.54  Aligned_cols=62  Identities=23%  Similarity=0.271  Sum_probs=54.7

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEECCCCC
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK-VNFLHGDALN  149 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-i~~~~~d~~~  149 (298)
                      ++|..|-|+-||.|.++..++. -+++|++-|+++++++..+..++.+.+.+. +..++.|+..
T Consensus       248 k~gevv~D~FaGvGPfa~Pa~k-K~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~  310 (495)
T KOG2078|consen  248 KPGEVVCDVFAGVGPFALPAAK-KGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD  310 (495)
T ss_pred             CCcchhhhhhcCcCccccchhh-cCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence            6899999999999999999998 479999999999999999999987777655 8888887654

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=95.62  E-value=0.039  Score=48.65  Aligned_cols=54  Identities=13%  Similarity=0.044  Sum_probs=43.3

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Q psy2408          78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAK  132 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~  132 (298)
                      +...+.+.+.|+++||-|.+|......++.. .+.+|++||+|+.++...+-+..
T Consensus        25 ~vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~-~P~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   25 RVDMEALNIGPDDRVLTITSAGCNALDYLLA-GPKRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             HHHHHHhCCCCCCeEEEEccCCchHHHHHhc-CCceEEEEeCCHHHHHHHHHHHH
Confidence            3456677889999999999887777767666 56899999999999888876654

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>KOG1099|consensus

Probab=95.61  E-value=0.025  Score=45.31  Aligned_cols=94  Identities=20%  Similarity=0.228  Sum_probs=66.3

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhc-C------C---eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-------
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAK-G------C---RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-------  151 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~-~------~---~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-------  151 (298)
                      -.+++|+....|.++..+.++. .      .   .+++||+.+-           ..+ +.+.-+++|++...       
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI-~GV~qlq~DIT~~stae~Ii~  109 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------API-EGVIQLQGDITSASTAEAIIE  109 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------Ccc-CceEEeecccCCHhHHHHHHH
Confidence            3589999999999999998862 1      2   3999998541           122 23677889988742       


Q ss_pred             -CCCCCeeEEEeccc-----ccccCh----H---HHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 -FDNDSFDGGWFFES-----IFHMNH----S---AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 -~~~~~fD~V~~~~~-----l~~~~~----~---~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                       |..++.|+|+|-++     +|.+..    .   .+|.-...+|+|||.++.-.+-
T Consensus       110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR  165 (294)
T KOG1099|consen  110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR  165 (294)
T ss_pred             HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence             55678999998543     333332    2   6777788999999998875443

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.61  E-value=0.099  Score=43.49  Aligned_cols=97  Identities=24%  Similarity=0.209  Sum_probs=62.5

Q ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCCCCCeeE
Q psy2408          86 ITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFDNDSFDG  159 (298)
Q Consensus        86 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~  159 (298)
                      +.++.+||..|+|+ |..+..+++..|.++++++.++...+.++..    +..   .++...-...     ....+.+|+
T Consensus       132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~d~  204 (271)
T cd05188         132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD---HVIDYKEEDLEEELRLTGGGGADV  204 (271)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc---eeccCCcCCHHHHHHHhcCCCCCE
Confidence            37889999999986 6666777776789999999998877776543    211   1111111111     012357999


Q ss_pred             EEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         160 GWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       160 V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      |+...     .....+..+.+.|+++|.++.....
T Consensus       205 vi~~~-----~~~~~~~~~~~~l~~~G~~v~~~~~  234 (271)
T cd05188         205 VIDAV-----GGPETLAQALRLLRPGGRIVVVGGT  234 (271)
T ss_pred             EEECC-----CCHHHHHHHHHhcccCCEEEEEccC
Confidence            87532     2224566778889999998876443

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=95.50  E-value=0.078  Score=43.76  Aligned_cols=103  Identities=19%  Similarity=0.126  Sum_probs=61.0

Q ss_pred             CeEEEeCCCCCHHHHHHHHh---c---CCeEEEEeCCH--------------------------HHHHHHHHHHHhcCC-
Q psy2408          90 QRFIDIGCGFGLSGIRLAKA---K---GCRVDGITISK--------------------------FQQESAMKTAKAEGL-  136 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~---~---~~~v~~vD~s~--------------------------~~l~~a~~~~~~~~~-  136 (298)
                      ..|+|+||-.|..+..++..   .   +.++.++|.-+                          ..++..++++...++ 
T Consensus        76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~  155 (248)
T PF05711_consen   76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGLL  155 (248)
T ss_dssp             SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTTS
T ss_pred             eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCCC
Confidence            48999999999877665432   2   35788988511                          134445555555443 


Q ss_pred             CCceEEEECCCCCC-C-CCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCC
Q psy2408         137 LDKVNFLHGDALNL-P-FDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPL  195 (298)
Q Consensus       137 ~~~i~~~~~d~~~~-~-~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~  195 (298)
                      ++++.++.+.+.+. | .+.+.+-++.+-.   -+-++  ..|..++..|.|||.+++.++..
T Consensus       156 ~~~v~~vkG~F~dTLp~~p~~~IAll~lD~---DlYesT~~aLe~lyprl~~GGiIi~DDY~~  215 (248)
T PF05711_consen  156 DDNVRFVKGWFPDTLPDAPIERIALLHLDC---DLYESTKDALEFLYPRLSPGGIIIFDDYGH  215 (248)
T ss_dssp             STTEEEEES-HHHHCCC-TT--EEEEEE------SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred             cccEEEECCcchhhhccCCCccEEEEEEec---cchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence            45799999998652 3 2233333322211   12234  99999999999999999998875

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.41  E-value=0.053  Score=45.66  Aligned_cols=98  Identities=15%  Similarity=0.091  Sum_probs=74.5

Q ss_pred             CCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccc
Q psy2408          89 GQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIF  167 (298)
Q Consensus        89 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~  167 (298)
                      +.+|.-||.|. |..+..++--.|+.|+.+|+|...+.+....+.     .+++..-.+...+.-.-.+.|+|+..-.+-
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVLIp  242 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVLIP  242 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence            35788899996 888888887679999999999998888877764     346666666555422225789998766666


Q ss_pred             ccChH-HHHHHHhhcccCCcEEEEE
Q psy2408         168 HMNHS-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       168 ~~~~~-~~l~~~~r~LkpgG~l~i~  191 (298)
                      --..| -..+++...||||+.++=.
T Consensus       243 gakaPkLvt~e~vk~MkpGsVivDV  267 (371)
T COG0686         243 GAKAPKLVTREMVKQMKPGSVIVDV  267 (371)
T ss_pred             CCCCceehhHHHHHhcCCCcEEEEE
Confidence            66677 7888999999999987643

>KOG2651|consensus

Probab=95.36  E-value=0.08  Score=45.79  Aligned_cols=44  Identities=27%  Similarity=0.248  Sum_probs=38.0

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKT  130 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~  130 (298)
                      .+-..|+|+|.|.|.++..+.-.+|..|.++|-|....+.|++.
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence            45568999999999999999988899999999998777776654

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.34  E-value=0.12  Score=46.08  Aligned_cols=101  Identities=15%  Similarity=0.080  Sum_probs=67.1

Q ss_pred             HHHHHHHhCCC-CCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          76 LSRIMINKTSI-TKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        76 ~~~~l~~~~~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+.+++..++ -+|.+|+-+|+|. |......++..|++|+++|.++..++.|+..    |.    ...  +..+. . 
T Consensus       188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G~----~~~--~~~e~-v-  255 (413)
T cd00401         188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----GY----EVM--TMEEA-V-  255 (413)
T ss_pred             hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----CC----EEc--cHHHH-H-
Confidence            34556665543 4789999999997 7777777776799999999998877766542    32    111  11111 1 


Q ss_pred             CCCeeEEEecccccccChHHHHHH-HhhcccCCcEEEEEeCC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNE-ARRVLKSGSILTLTDLP  194 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~-~~r~LkpgG~l~i~~~~  194 (298)
                       ..+|+|+..     ...+..+.. ..+.+++||+++.....
T Consensus       256 -~~aDVVI~a-----tG~~~~i~~~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         256 -KEGDIFVTT-----TGNKDIITGEHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             -cCCCEEEEC-----CCCHHHHHHHHHhcCCCCcEEEEeCCC
Confidence             357988753     233444544 58899999998876543

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02740 Alcohol dehydrogenase-like

Probab=95.33  E-value=0.12  Score=45.98  Aligned_cols=100  Identities=20%  Similarity=0.326  Sum_probs=65.5

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC-----CCC-C-CC
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD-----ALN-L-PF  152 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d-----~~~-~-~~  152 (298)
                      +...+.++.+||=+|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++...     ..+ + ..
T Consensus       192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~v~~~  264 (381)
T PLN02740        192 NTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----GIT---DFINPKDSDKPVHERIREM  264 (381)
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----CCc---EEEecccccchHHHHHHHH
Confidence            445678899999999875 7777777777787 699999999888888643    321   122211     100 0 01


Q ss_pred             CCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeC
Q psy2408         153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDL  193 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~  193 (298)
                      ..+.+|+|+-     ....+..+......++++ |++++...
T Consensus       265 ~~~g~dvvid-----~~G~~~~~~~a~~~~~~g~G~~v~~G~  301 (381)
T PLN02740        265 TGGGVDYSFE-----CAGNVEVLREAFLSTHDGWGLTVLLGI  301 (381)
T ss_pred             hCCCCCEEEE-----CCCChHHHHHHHHhhhcCCCEEEEEcc
Confidence            1236888854     333345677777888887 98877554

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=95.28  E-value=0.14  Score=44.81  Aligned_cols=99  Identities=20%  Similarity=0.130  Sum_probs=65.1

Q ss_pred             HhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC----CCCC-C-CCC
Q psy2408          82 NKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG----DALN-L-PFD  153 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~----d~~~-~-~~~  153 (298)
                      ....+.++.+||=.|+ | .|..+..+++..|+++++++.+++..+.++..+   |..   .++..    +..+ + ...
T Consensus       152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l---Ga~---~vi~~~~~~~~~~~i~~~~  225 (348)
T PLN03154        152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL---GFD---EAFNYKEEPDLDAALKRYF  225 (348)
T ss_pred             HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc---CCC---EEEECCCcccHHHHHHHHC
Confidence            4456788999999998 4 488888888878999999999988777665322   321   12221    1111 0 111


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .+.+|+|+-.-     .. ..+....++|+++|++++..
T Consensus       226 ~~gvD~v~d~v-----G~-~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        226 PEGIDIYFDNV-----GG-DMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             CCCcEEEEECC-----CH-HHHHHHHHHhccCCEEEEEC
Confidence            24688886432     22 46677889999999988754

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=95.24  E-value=0.069  Score=42.53  Aligned_cols=120  Identities=17%  Similarity=0.026  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHhc----------------
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG---CRVDGITISKFQQESAMKTAKAE----------------  134 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~~vD~s~~~l~~a~~~~~~~----------------  134 (298)
                      .++.+..+..+.-..+-++.|-+||.|.+.--+.--.+   ..|.+.|+++.+++.|+.++.-.                
T Consensus        37 sEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~  116 (246)
T PF11599_consen   37 SEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELY  116 (246)
T ss_dssp             HHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHH
Confidence            34444444555445667999999999998776654322   47999999999999998863210                


Q ss_pred             ---C----------------------CCCceEEEECCCCCCC-----CCCCCeeEEEeccccc----ccC----hH--HH
Q psy2408         135 ---G----------------------LLDKVNFLHGDALNLP-----FDNDSFDGGWFFESIF----HMN----HS--AA  174 (298)
Q Consensus       135 ---~----------------------~~~~i~~~~~d~~~~~-----~~~~~fD~V~~~~~l~----~~~----~~--~~  174 (298)
                         +                      -..-..+.+.|+.+..     ......|+|+.---.-    |-.    ++  .+
T Consensus       117 e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~m  196 (246)
T PF11599_consen  117 EQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQM  196 (246)
T ss_dssp             HHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHH
T ss_pred             HHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHH
Confidence               0                      0112567788887731     0123368888632222    222    23  89


Q ss_pred             HHHHhhcccCCcEEEEEeC
Q psy2408         175 LNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       175 l~~~~r~LkpgG~l~i~~~  193 (298)
                      |..++++|-+++++.+++-
T Consensus       197 l~~l~~vLp~~sVV~v~~k  215 (246)
T PF11599_consen  197 LNSLAPVLPERSVVAVSDK  215 (246)
T ss_dssp             HHHHHCCS-TT-EEEEEES
T ss_pred             HHHHHhhCCCCcEEEEecC
Confidence            9999999955566666443

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=95.23  E-value=0.078  Score=41.39  Aligned_cols=104  Identities=21%  Similarity=0.280  Sum_probs=74.0

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-------CCCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-------FDND  155 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~  155 (298)
                      .+..|+|+|+-.|..++..|..   .|  .+|.++|++-..+..+-..     . +.|.|+.++..+..       ..++
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~dpai~eqi~~~~~~  142 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSSTDPAIAEQIRRLKNE  142 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCCCHHHHHHHHHHhcC
Confidence            3469999999999888877764   35  7999999986554433222     2 46999999987742       2222


Q ss_pred             CeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         156 SFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      .--+.++..+-|+...- .-|+-+.++|..|-++++.+....+
T Consensus       143 y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d  185 (237)
T COG3510         143 YPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND  185 (237)
T ss_pred             CCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence            22344556666666666 8889999999999999998776554

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=95.22  E-value=0.16  Score=42.13  Aligned_cols=100  Identities=20%  Similarity=0.173  Sum_probs=71.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC---CCCeeEEEec
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD---NDSFDGGWFF  163 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~V~~~  163 (298)
                      .|..|+-+| -.-..++.++-. +..++..+|+++..+....+.+++.|+. ++..+..|+.+ |+|   ...||+.+. 
T Consensus       152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~-plpe~~~~kFDvfiT-  227 (354)
T COG1568         152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRN-PLPEDLKRKFDVFIT-  227 (354)
T ss_pred             CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcc-cChHHHHhhCCeeec-
Confidence            467899999 444555555543 4569999999999999999999999884 68999999987 454   368998653 


Q ss_pred             ccccccChH-HHHHHHhhcccCC---cEEEEE
Q psy2408         164 ESIFHMNHS-AALNEARRVLKSG---SILTLT  191 (298)
Q Consensus       164 ~~l~~~~~~-~~l~~~~r~Lkpg---G~l~i~  191 (298)
                      ..-+.++.. .++.+=...||..   |++.++
T Consensus       228 DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT  259 (354)
T COG1568         228 DPPETIKALKLFLGRGIATLKGEGCAGYFGIT  259 (354)
T ss_pred             CchhhHHHHHHHHhccHHHhcCCCccceEeee
Confidence            333344444 5666666677755   666664

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=95.18  E-value=0.099  Score=45.67  Aligned_cols=101  Identities=21%  Similarity=0.199  Sum_probs=64.1

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC---CCC--CCCC
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA---LNL--PFDN  154 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~---~~~--~~~~  154 (298)
                      ......++.+||=.|+|. |..+..+++..|++ +++++.+++..+.+++.    |..   .++..+-   ..+  ....
T Consensus       154 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~~~  226 (347)
T PRK10309        154 HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----GAM---QTFNSREMSAPQIQSVLRE  226 (347)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc---eEecCcccCHHHHHHHhcC
Confidence            445567889999999875 66777777777886 78999999887776432    321   1221111   001  0122


Q ss_pred             CCee-EEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         155 DSFD-GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       155 ~~fD-~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ..+| +|+     ........+....++|++||++++....
T Consensus       227 ~~~d~~v~-----d~~G~~~~~~~~~~~l~~~G~iv~~G~~  262 (347)
T PRK10309        227 LRFDQLIL-----ETAGVPQTVELAIEIAGPRAQLALVGTL  262 (347)
T ss_pred             CCCCeEEE-----ECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence            3566 443     2333346778888999999998886543

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=95.12  E-value=0.17  Score=44.35  Aligned_cols=104  Identities=21%  Similarity=0.163  Sum_probs=64.9

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----C-CCC
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----P-FDN  154 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~  154 (298)
                      ....+.++.+||-.|||. |..+..+++..|++++++|.+++.++.+++.    |...-+.....+..++     . ...
T Consensus       160 ~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~~~~t~~  235 (349)
T TIGR03201       160 VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF----GADLTLNPKDKSAREVKKLIKAFAKA  235 (349)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCceEecCccccHHHHHHHHHhhccc
Confidence            345678899999999976 7777777877788999999999988877543    3211111111110010     0 011


Q ss_pred             CCee----EEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         155 DSFD----GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       155 ~~fD----~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ..+|    +|+     ........+....++|++||++++....
T Consensus       236 ~g~d~~~d~v~-----d~~g~~~~~~~~~~~l~~~G~iv~~G~~  274 (349)
T TIGR03201       236 RGLRSTGWKIF-----ECSGSKPGQESALSLLSHGGTLVVVGYT  274 (349)
T ss_pred             CCCCCCcCEEE-----ECCCChHHHHHHHHHHhcCCeEEEECcC
Confidence            2344    343     3333346677788899999999887544

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.12  E-value=0.1  Score=44.85  Aligned_cols=88  Identities=18%  Similarity=0.141  Sum_probs=58.8

Q ss_pred             CCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecc
Q psy2408          87 TKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE  164 (298)
Q Consensus        87 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~  164 (298)
                      .++.+||=+|||. |.++..+++..|++ +.++|.++..++.+...    .      ++  |..+.  ....+|+|+-. 
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~--~~~g~Dvvid~-  207 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD--PRRDYRAIYDA-  207 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc--cCCCCCEEEEC-
Confidence            3577899999885 77777788877876 67789888776665431    1      11  11110  12468887643 


Q ss_pred             cccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         165 SIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       165 ~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                          ...+..+..+.+.|+++|++++...
T Consensus       208 ----~G~~~~~~~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       208 ----SGDPSLIDTLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             ----CCCHHHHHHHHHhhhcCcEEEEEee
Confidence                3334567888899999999987654

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.12  E-value=0.064  Score=45.33  Aligned_cols=66  Identities=23%  Similarity=0.120  Sum_probs=49.7

Q ss_pred             eEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC--CCCeeEEEecc
Q psy2408          91 RFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD--NDSFDGGWFFE  164 (298)
Q Consensus        91 ~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~V~~~~  164 (298)
                      +|+|+-||.|.++.-+.+ .|. .+.++|+++..++..+.++..       .+++.|+.++...  ...+|+++...
T Consensus         2 ~v~dLFsG~Gg~~~gl~~-~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEK-AGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHH-cCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCC
Confidence            699999999999888877 455 578899999998888776532       2567787776422  35799998754

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=95.11  E-value=0.93  Score=40.14  Aligned_cols=114  Identities=18%  Similarity=0.217  Sum_probs=68.9

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHH----HhcC----CeEEEEeC----CHHHHHHHHHHHH----hcCCCCce
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLA----KAKG----CRVDGITI----SKFQQESAMKTAK----AEGLLDKV  140 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~----~~~~----~~v~~vD~----s~~~l~~a~~~~~----~~~~~~~i  140 (298)
                      .+.|++.+.-...-+|+|+|.|.|.--..|.    .+.+    .++|+|+.    +...++.+.+++.    ..|++  .
T Consensus        99 NqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--f  176 (374)
T PF03514_consen   99 NQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--F  176 (374)
T ss_pred             hHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--E
Confidence            3456666665677799999999986544443    3322    48999999    7777777766644    44554  4


Q ss_pred             EEEEC---CCCCC-----CCCCCCeeEEEecccccccCh-------H--HHHHHHhhcccCCcEEEEEeCC
Q psy2408         141 NFLHG---DALNL-----PFDNDSFDGGWFFESIFHMNH-------S--AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       141 ~~~~~---d~~~~-----~~~~~~fD~V~~~~~l~~~~~-------~--~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +|...   +..++     ....+..=+|-+...++++.+       +  .+|+ ..+.|+|.-.+ +.+..
T Consensus       177 ef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv-~~E~e  245 (374)
T PF03514_consen  177 EFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVV-LVEQE  245 (374)
T ss_pred             EEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEE-EEeec
Confidence            44442   33332     123344555556777788862       2  3554 44577998444 44443

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>KOG1227|consensus

Probab=95.08  E-value=0.011  Score=49.26  Aligned_cols=103  Identities=20%  Similarity=0.211  Sum_probs=76.3

Q ss_pred             CCCeEEEeCCCCCHHHH-HHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          88 KGQRFIDIGCGFGLSGI-RLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~-~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      .+..|.|+=+|-|.++. .+.......|.++|.+|..++..++.++.+++..+...+.+|-.... ++...|.|..    
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-~~~~AdrVnL----  268 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-PRLRADRVNL----  268 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC-ccccchheee----
Confidence            45799999999999998 55553335899999999999999999998888777778888877643 4678888863    


Q ss_pred             cccChH-HHHHHHhhcccCCc--EEEEEeCCC
Q psy2408         167 FHMNHS-AALNEARRVLKSGS--ILTLTDLPL  195 (298)
Q Consensus       167 ~~~~~~-~~l~~~~r~LkpgG--~l~i~~~~~  195 (298)
                      --+|.. +-...+..+|+|.|  .+-|.+...
T Consensus       269 GLlPSse~~W~~A~k~Lk~eggsilHIHenV~  300 (351)
T KOG1227|consen  269 GLLPSSEQGWPTAIKALKPEGGSILHIHENVK  300 (351)
T ss_pred             ccccccccchHHHHHHhhhcCCcEEEEecccc
Confidence            234444 55556677788764  455554443

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=95.01  E-value=0.19  Score=43.66  Aligned_cols=97  Identities=20%  Similarity=0.210  Sum_probs=62.0

Q ss_pred             CCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC---CCCCCCCCCCee
Q psy2408          84 TSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD---ALNLPFDNDSFD  158 (298)
Q Consensus        84 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~fD  158 (298)
                      +...++.+||-.|||. |..+..+++..|. ++++++.++...+.+++.    +..   .++..+   ...+....+.+|
T Consensus       161 ~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~vd  233 (339)
T cd08232         161 AGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD---ETVNLARDPLAAYAADKGDFD  233 (339)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC---EEEcCCchhhhhhhccCCCcc
Confidence            3333788999998875 6677777777787 799999998877765543    221   122111   111211124589


Q ss_pred             EEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +|+....     ....++.+.+.|+++|+++...
T Consensus       234 ~vld~~g-----~~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         234 VVFEASG-----APAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             EEEECCC-----CHHHHHHHHHHHhcCCEEEEEe
Confidence            9875432     1245778889999999988654

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=95.01  E-value=0.34  Score=41.55  Aligned_cols=107  Identities=19%  Similarity=0.259  Sum_probs=73.4

Q ss_pred             HHHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC----CCCC--
Q psy2408          79 IMINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD----ALNL--  150 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d----~~~~--  150 (298)
                      ..++..++++|.+|.-+|||. |..++.-+...++ +++++|+++.-++.|++.-.       .++++..    +.+-  
T Consensus       176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA-------T~~vn~~~~~~vv~~i~  248 (366)
T COG1062         176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA-------THFVNPKEVDDVVEAIV  248 (366)
T ss_pred             HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC-------ceeecchhhhhHHHHHH
Confidence            456777889999999999996 7777666665554 89999999999999987622       3333331    1110  


Q ss_pred             CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      ..-++..|.+     ++...+...++.....+.++|..++.-.....
T Consensus       249 ~~T~gG~d~~-----~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~  290 (366)
T COG1062         249 ELTDGGADYA-----FECVGNVEVMRQALEATHRGGTSVIIGVAGAG  290 (366)
T ss_pred             HhcCCCCCEE-----EEccCCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            1223355655     44445557888888888889998887665433

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=94.93  E-value=0.24  Score=42.82  Aligned_cols=99  Identities=17%  Similarity=0.137  Sum_probs=65.0

Q ss_pred             HHhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC----CCCC--CC
Q psy2408          81 INKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD----ALNL--PF  152 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d----~~~~--~~  152 (298)
                      .+...+.++.+||=.|+ | .|..+..+++..|+++++++.+++..+.+++.    |..   .++..+    ..+.  ..
T Consensus       131 ~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~~~  203 (325)
T TIGR02825       131 LEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKL----GFD---VAFNYKTVKSLEETLKKA  203 (325)
T ss_pred             HHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EEEeccccccHHHHHHHh
Confidence            35566788999999984 3 58888888887899999999998877777542    331   122211    1110  11


Q ss_pred             CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ..+.+|+|+-.     ... ..+....++|+++|+++...
T Consensus       204 ~~~gvdvv~d~-----~G~-~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       204 SPDGYDCYFDN-----VGG-EFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             CCCCeEEEEEC-----CCH-HHHHHHHHHhCcCcEEEEec
Confidence            22468988642     222 34578889999999998753

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=94.85  E-value=0.16  Score=44.85  Aligned_cols=104  Identities=21%  Similarity=0.232  Sum_probs=65.5

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE--CCCCC-C-CCCC
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLH--GDALN-L-PFDN  154 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~--~d~~~-~-~~~~  154 (298)
                      .+...+.++.+||=.|||. |..+..+++..|+ +|+++|.+++.++.+++.    |...-+....  .+..+ + ....
T Consensus       178 ~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~  253 (368)
T TIGR02818       178 LNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GATDCVNPNDYDKPIQEVIVEITD  253 (368)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCeEEcccccchhHHHHHHHHhC
Confidence            3456678899999999875 7777777887787 799999999988887553    3211111110  00000 0 0112


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDL  193 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~  193 (298)
                      +.+|+|+-.     ...+..+....+.++++ |++++...
T Consensus       254 ~g~d~vid~-----~G~~~~~~~~~~~~~~~~G~~v~~g~  288 (368)
T TIGR02818       254 GGVDYSFEC-----IGNVNVMRAALECCHKGWGESIIIGV  288 (368)
T ss_pred             CCCCEEEEC-----CCCHHHHHHHHHHhhcCCCeEEEEec
Confidence            357877532     33345677778889886 99887654

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK13699 putative methylase; Provisional

Probab=94.74  E-value=0.07  Score=43.67  Aligned_cols=51  Identities=22%  Similarity=0.330  Sum_probs=33.6

Q ss_pred             EEEECCCCCC--CCCCCCeeEEEeccccc----c-----c-----ChH--HHHHHHhhcccCCcEEEEE
Q psy2408         141 NFLHGDALNL--PFDNDSFDGGWFFESIF----H-----M-----NHS--AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       141 ~~~~~d~~~~--~~~~~~fD~V~~~~~l~----~-----~-----~~~--~~l~~~~r~LkpgG~l~i~  191 (298)
                      +++++|..+.  .++++++|+|+..--..    .     +     .+.  ..+.++.|+|||||.+++.
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if   71 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF   71 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            4566776654  56678888887641110    0     0     011  7889999999999988763

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=94.68  E-value=0.19  Score=44.32  Aligned_cols=102  Identities=23%  Similarity=0.298  Sum_probs=65.4

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC-----CCC-C-C
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD-----ALN-L-P  151 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d-----~~~-~-~  151 (298)
                      .+...+.++.+||=.|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++...     +.+ + .
T Consensus       179 ~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l----Ga~---~~i~~~~~~~~~~~~v~~  251 (368)
T cd08300         179 LNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF----GAT---DCVNPKDHDKPIQQVLVE  251 (368)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCC---EEEcccccchHHHHHHHH
Confidence            3455678899999999875 6667777777788 799999999888877542    321   122111     100 0 0


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeCC
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDLP  194 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~  194 (298)
                      ...+.+|+|+-.     ...+..+....+.++++ |+++.....
T Consensus       252 ~~~~g~d~vid~-----~g~~~~~~~a~~~l~~~~G~~v~~g~~  290 (368)
T cd08300         252 MTDGGVDYTFEC-----IGNVKVMRAALEACHKGWGTSVIIGVA  290 (368)
T ss_pred             HhCCCCcEEEEC-----CCChHHHHHHHHhhccCCCeEEEEccC
Confidence            112368888642     23335677788899887 988876543

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PLN02827 Alcohol dehydrogenase-like

Probab=94.52  E-value=0.18  Score=44.68  Aligned_cols=100  Identities=20%  Similarity=0.313  Sum_probs=63.1

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC-----CCC-C-CC
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD-----ALN-L-PF  152 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d-----~~~-~-~~  152 (298)
                      ....+.++.+||-.|+|. |..+..+++..|+ .++++|.++...+.+++.    |..   .++...     ... + ..
T Consensus       187 ~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----Ga~---~~i~~~~~~~~~~~~v~~~  259 (378)
T PLN02827        187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----GVT---DFINPNDLSEPIQQVIKRM  259 (378)
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc---EEEcccccchHHHHHHHHH
Confidence            345567899999999875 6677777776787 588999998877777543    332   122111     100 0 01


Q ss_pred             CCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeC
Q psy2408         153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDL  193 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~  193 (298)
                      ..+.+|+|+-     ....+..+....+.+++| |++++...
T Consensus       260 ~~~g~d~vid-----~~G~~~~~~~~l~~l~~g~G~iv~~G~  296 (378)
T PLN02827        260 TGGGADYSFE-----CVGDTGIATTALQSCSDGWGLTVTLGV  296 (378)
T ss_pred             hCCCCCEEEE-----CCCChHHHHHHHHhhccCCCEEEEECC
Confidence            1235888753     233334667788889998 99987543

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=94.40  E-value=0.43  Score=41.46  Aligned_cols=108  Identities=18%  Similarity=0.152  Sum_probs=69.1

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCC--CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC---C
Q psy2408          77 SRIMINKTSITKGQRFIDIGCG--FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL---P  151 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~---~  151 (298)
                      ...+....+++++.+||=.|+.  .|.++..|++..|+.++++--+++-.+.+++.    |-+.-+.+...|+.+-   .
T Consensus       131 ~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l----GAd~vi~y~~~~~~~~v~~~  206 (326)
T COG0604         131 WLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL----GADHVINYREEDFVEQVREL  206 (326)
T ss_pred             HHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhc----CCCEEEcCCcccHHHHHHHH
Confidence            3444455677889999999943  47888888888887777777777655555544    3222233333333221   1


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .....+|+|+-.-.-      ..+.+....|+++|+++.....
T Consensus       207 t~g~gvDvv~D~vG~------~~~~~~l~~l~~~G~lv~ig~~  243 (326)
T COG0604         207 TGGKGVDVVLDTVGG------DTFAASLAALAPGGRLVSIGAL  243 (326)
T ss_pred             cCCCCceEEEECCCH------HHHHHHHHHhccCCEEEEEecC
Confidence            123469999753332      5777788999999998886554

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=94.40  E-value=0.044  Score=40.13  Aligned_cols=76  Identities=20%  Similarity=0.301  Sum_probs=47.8

Q ss_pred             eEEEECCCCCC-CCCCCCeeEEEecccccccChH-----HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhc
Q psy2408         140 VNFLHGDALNL-PFDNDSFDGGWFFESIFHMNHS-----AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNI  213 (298)
Q Consensus       140 i~~~~~d~~~~-~~~~~~fD~V~~~~~l~~~~~~-----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~  213 (298)
                      +++..+|+.+. +--...||+|+.-. +.--.+|     .+++.+.++++|||.+.-.  +                   
T Consensus        33 L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Ty--s-------------------   90 (124)
T PF05430_consen   33 LTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATY--S-------------------   90 (124)
T ss_dssp             EEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred             EEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEe--e-------------------
Confidence            55666776542 21126899988754 2222222     9999999999999976542  1                   


Q ss_pred             ccCCCCcchHHHHHHhCCCcEEEEEeCCC
Q psy2408         214 HSNFILVEHYPDLLNKSGFELIKIDDITS  242 (298)
Q Consensus       214 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  242 (298)
                           ....++..|.++||.+.....++.
T Consensus        91 -----~a~~Vr~~L~~aGF~v~~~~g~g~  114 (124)
T PF05430_consen   91 -----SAGAVRRALQQAGFEVEKVPGFGR  114 (124)
T ss_dssp             ------BHHHHHHHHHCTEEEEEEE-STT
T ss_pred             -----chHHHHHHHHHcCCEEEEcCCCCC
Confidence                 134688999999999887776543

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=94.38  E-value=0.12  Score=45.60  Aligned_cols=67  Identities=15%  Similarity=0.146  Sum_probs=55.6

Q ss_pred             hcCCCCceEEEECCCCCC--CCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCC
Q psy2408         133 AEGLLDKVNFLHGDALNL--PFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSK  200 (298)
Q Consensus       133 ~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~  200 (298)
                      +.++ ++++++++++.+.  ..+++++|.++.++.+.++++.   +.++++.+.++|||++++-........+
T Consensus       271 r~~~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~~~~  342 (380)
T PF11899_consen  271 RARL-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPPWYP  342 (380)
T ss_pred             hcCC-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCc
Confidence            3344 6899999998775  3567999999999999999987   9999999999999999998776555443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=94.19  E-value=0.28  Score=42.35  Aligned_cols=98  Identities=15%  Similarity=0.097  Sum_probs=64.4

Q ss_pred             HhCCCCCCCeEEEeCC--CCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCCC
Q psy2408          82 NKTSITKGQRFIDIGC--GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFDN  154 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~  154 (298)
                      ....+.++.+||=.|+  |.|..+..+++..|+++++++.+++..+.+++.    |..   .++...-.++     ....
T Consensus       137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~----Ga~---~vi~~~~~~~~~~v~~~~~  209 (329)
T cd08294         137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKEL----GFD---AVFNYKTVSLEEALKEAAP  209 (329)
T ss_pred             HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EEEeCCCccHHHHHHHHCC
Confidence            4556788999998884  347777888887899999999998877777652    331   2222111111     1112


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ..+|+|+-.-     .. ..+....+.|+++|+++...
T Consensus       210 ~gvd~vld~~-----g~-~~~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         210 DGIDCYFDNV-----GG-EFSSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             CCcEEEEECC-----CH-HHHHHHHHhhccCCEEEEEc
Confidence            4688886422     12 46678889999999987653

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=94.11  E-value=0.31  Score=42.96  Aligned_cols=105  Identities=26%  Similarity=0.332  Sum_probs=64.6

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC--CC-C-CCCC
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA--LN-L-PFDN  154 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~--~~-~-~~~~  154 (298)
                      .+...+.++.+||=.|+|. |..+..+++..|+ +|+++|.++...+.+++.    +...-+.....+.  .. + ....
T Consensus       177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~  252 (365)
T cd08277         177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----GATDFINPKDSDKPVSEVIREMTG  252 (365)
T ss_pred             HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCCcEeccccccchHHHHHHHHhC
Confidence            3445678899999998864 6666677777787 799999999888877542    3211111111000  00 0 0112


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeCC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDLP  194 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~  194 (298)
                      ..+|+|+-.     ......+....+.++++ |++++....
T Consensus       253 ~g~d~vid~-----~g~~~~~~~~~~~l~~~~G~~v~~g~~  288 (365)
T cd08277         253 GGVDYSFEC-----TGNADLMNEALESTKLGWGVSVVVGVP  288 (365)
T ss_pred             CCCCEEEEC-----CCChHHHHHHHHhcccCCCEEEEEcCC
Confidence            468888632     22235677788899886 998876543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=94.01  E-value=0.57  Score=40.46  Aligned_cols=99  Identities=24%  Similarity=0.188  Sum_probs=64.0

Q ss_pred             hCCCCCCCeEEEeCCC-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-CCCCCeeEE
Q psy2408          83 KTSITKGQRFIDIGCG-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-FDNDSFDGG  160 (298)
Q Consensus        83 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V  160 (298)
                      ...+.++.+||-.||| .|..+..+++..|.++++++.+++..+.+++.    +..   .++...-.... ...+.+|+|
T Consensus       157 ~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~d~v  229 (330)
T cd08245         157 DAGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL----GAD---EVVDSGAELDEQAAAGGADVI  229 (330)
T ss_pred             hhCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----CCc---EEeccCCcchHHhccCCCCEE
Confidence            3567788899999987 47777777777788999999999887777432    211   11111110100 012468888


Q ss_pred             EecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         161 WFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       161 ~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +...     .....+..+.+.|+++|.++....
T Consensus       230 i~~~-----~~~~~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         230 LVTV-----VSGAAAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             EECC-----CcHHHHHHHHHhcccCCEEEEECC
Confidence            6432     223567788899999999887643

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.97  E-value=1.3  Score=37.94  Aligned_cols=148  Identities=14%  Similarity=0.016  Sum_probs=90.6

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEECCCCCCC---------CCCCCe
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG--LLDKVNFLHGDALNLP---------FDNDSF  157 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~i~~~~~d~~~~~---------~~~~~f  157 (298)
                      ...|+-+|||-=.-+..+-.-.+.+|.-+|. |+.++.=++.+.+.+  ++.+.+++..|+.+-.         +..+.-
T Consensus        93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~p  171 (297)
T COG3315          93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRP  171 (297)
T ss_pred             ccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCC
Confidence            5799999999755444443322456666665 555555555555544  2346889999998432         223445


Q ss_pred             eEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCC-CCC--hhHHHHHHH-----hhcccCCCCcchHHHH
Q psy2408         158 DGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSV-SKN--DNKFKEYVK-----KNIHSNFILVEHYPDL  226 (298)
Q Consensus       158 D~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~-~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~  226 (298)
                      -++++-+++.+++..   .+|..+...+.||..++......... ...  .........     ...........++..+
T Consensus       172 t~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~  251 (297)
T COG3315         172 TLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIETW  251 (297)
T ss_pred             eEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHHHH
Confidence            578889999999987   99999999999988877764311110 000  000000000     0011123447899999


Q ss_pred             HHhCCCcEEEE
Q psy2408         227 LNKSGFELIKI  237 (298)
Q Consensus       227 l~~~Gf~~~~~  237 (298)
                      +.+.||.....
T Consensus       252 l~~~g~~~~~~  262 (297)
T COG3315         252 LAERGWRSTLN  262 (297)
T ss_pred             HHhcCEEEEec
Confidence            99999986654

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=93.93  E-value=0.82  Score=38.33  Aligned_cols=99  Identities=26%  Similarity=0.277  Sum_probs=63.6

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeE
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDG  159 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  159 (298)
                      ....+.++.+||-.|||. |..+..+++..|.+ +++++.+++..+.+++.    +....+  ...  .........+|+
T Consensus        91 ~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~--~~~~~~~~~~d~  162 (277)
T cd08255          91 RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPV--AAD--TADEIGGRGADV  162 (277)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccc--ccc--chhhhcCCCCCE
Confidence            355677889999998875 66777777777887 99999999887766643    211111  111  000112346898


Q ss_pred             EEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         160 GWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       160 V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      |+....     ....+....+.|+++|+++....
T Consensus       163 vl~~~~-----~~~~~~~~~~~l~~~g~~~~~g~  191 (277)
T cd08255         163 VIEASG-----SPSALETALRLLRDRGRVVLVGW  191 (277)
T ss_pred             EEEccC-----ChHHHHHHHHHhcCCcEEEEEec
Confidence            874321     12466778889999999886543

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.90  E-value=0.69  Score=39.75  Aligned_cols=97  Identities=19%  Similarity=0.164  Sum_probs=64.2

Q ss_pred             HHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee
Q psy2408          80 MINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD  158 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  158 (298)
                      ++....+.++.+||=.|+|. |..+..+++..|.++++++.+++..+.++.    .+...   ..  +.... .....+|
T Consensus       147 ~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~~---~~--~~~~~-~~~~~~d  216 (319)
T cd08242         147 ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVET---VL--PDEAE-SEGGGFD  216 (319)
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCcE---Ee--Ccccc-ccCCCCC
Confidence            34556678889999998764 555666666678899999999988887765    23321   11  11111 2345689


Q ss_pred             EEEecccccccChHHHHHHHhhcccCCcEEEEE
Q psy2408         159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLT  191 (298)
Q Consensus       159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~  191 (298)
                      +|+-.     ......+..+.+.|+++|.+++.
T Consensus       217 ~vid~-----~g~~~~~~~~~~~l~~~g~~v~~  244 (319)
T cd08242         217 VVVEA-----TGSPSGLELALRLVRPRGTVVLK  244 (319)
T ss_pred             EEEEC-----CCChHHHHHHHHHhhcCCEEEEE
Confidence            88753     22224667788899999999873

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=93.88  E-value=0.38  Score=42.37  Aligned_cols=97  Identities=23%  Similarity=0.209  Sum_probs=58.7

Q ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCCCCCCCCCCeeEEEec
Q psy2408          86 ITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DALNLPFDNDSFDGGWFF  163 (298)
Q Consensus        86 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~fD~V~~~  163 (298)
                      +.++.+||-.|+|. |..+..+++..|+++++++.++.....+.   ...|..   .++.. +...+.-..+.+|+|+- 
T Consensus       181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~---~~~Ga~---~vi~~~~~~~~~~~~~~~D~vid-  253 (360)
T PLN02586        181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAI---NRLGAD---SFLVSTDPEKMKAAIGTMDYIID-  253 (360)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHH---HhCCCc---EEEcCCCHHHHHhhcCCCCEEEE-
Confidence            45788999999875 77777788877889999888765432221   122321   12211 11111000124787763 


Q ss_pred             ccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         164 ESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       164 ~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                          ....+..+....++|+++|+++....
T Consensus       254 ----~~g~~~~~~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        254 ----TVSAVHALGPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             ----CCCCHHHHHHHHHHhcCCcEEEEeCC
Confidence                22333567788899999999887643

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=93.75  E-value=0.21  Score=43.36  Aligned_cols=102  Identities=27%  Similarity=0.336  Sum_probs=64.9

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-C--CCCCCCe
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-L--PFDNDSF  157 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~f  157 (298)
                      ....+.++.+||-.|+|. |..+..+++..|.+++++..+++..+.+++.    +...-+.....+... +  ..+...+
T Consensus       153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~v  228 (337)
T cd08261         153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGA  228 (337)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCC
Confidence            455677889999998774 7777778887899999998888877776443    211101111111100 1  1123468


Q ss_pred             eEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         158 DGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       158 D~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      |+++...     .....+..+.+.|+++|+++...
T Consensus       229 d~vld~~-----g~~~~~~~~~~~l~~~G~~i~~g  258 (337)
T cd08261         229 DVVIDAT-----GNPASMEEAVELVAHGGRVVLVG  258 (337)
T ss_pred             CEEEECC-----CCHHHHHHHHHHHhcCCEEEEEc
Confidence            9987542     12256778889999999987654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=93.73  E-value=1.3  Score=38.46  Aligned_cols=101  Identities=18%  Similarity=0.187  Sum_probs=65.1

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-------C-
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-------L-  150 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-------~-  150 (298)
                      +....+.++.+||-.|+|. |..+..+++..|.+ +++++.+++..+.+++.    +..   .++..+-..       + 
T Consensus       155 ~~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~  227 (343)
T cd05285         155 CRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GAT---HTVNVRTEDTPESAEKIA  227 (343)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc---EEeccccccchhHHHHHH
Confidence            3566778899999988765 66777777777887 89998888877766542    221   122111111       1 


Q ss_pred             -CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         151 -PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       151 -~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                       ......+|+|+-+..     ....+....+.|+++|+++....
T Consensus       228 ~~~~~~~~d~vld~~g-----~~~~~~~~~~~l~~~G~~v~~g~  266 (343)
T cd05285         228 ELLGGKGPDVVIECTG-----AESCIQTAIYATRPGGTVVLVGM  266 (343)
T ss_pred             HHhCCCCCCEEEECCC-----CHHHHHHHHHHhhcCCEEEEEcc
Confidence             122355899875422     12467788899999999886543

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG0821|consensus

Probab=93.71  E-value=0.92  Score=36.43  Aligned_cols=75  Identities=19%  Similarity=0.166  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      .++.+.+....+.-...-|.+||.|.|..+..+...--.++..|+.++.++.-.+-..+..  +.+..+...|+..+
T Consensus        36 ~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR~  110 (326)
T KOG0821|consen   36 LRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLRF  110 (326)
T ss_pred             hHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC--CcceEEecccccee
Confidence            4677888888877777899999999999999998843358889999988877776665533  34677788887653

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=93.62  E-value=0.4  Score=41.62  Aligned_cols=100  Identities=14%  Similarity=0.091  Sum_probs=63.9

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---CCCCCe
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---FDNDSF  157 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~f  157 (298)
                      ..+.+.++.+||=.|||. |..+..+++..|.++++++.+++.++.+++.    +..   .++...-.++.   .....+
T Consensus       157 ~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~----g~~---~~i~~~~~~~~~~~~~~~~~  229 (333)
T cd08296         157 RNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKL----GAH---HYIDTSKEDVAEALQELGGA  229 (333)
T ss_pred             HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc----CCc---EEecCCCccHHHHHHhcCCC
Confidence            344677889999999765 6777777777788999999998877777432    321   12221111110   001347


Q ss_pred             eEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         158 DGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       158 D~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      |+++..     ......+..+.+.|+++|+++....
T Consensus       230 d~vi~~-----~g~~~~~~~~~~~l~~~G~~v~~g~  260 (333)
T cd08296         230 KLILAT-----APNAKAISALVGGLAPRGKLLILGA  260 (333)
T ss_pred             CEEEEC-----CCchHHHHHHHHHcccCCEEEEEec
Confidence            888642     2223567778899999999887644

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08293 PTGR2 Prostaglandin reductase

Probab=93.60  E-value=0.51  Score=41.07  Aligned_cols=99  Identities=19%  Similarity=0.173  Sum_probs=62.3

Q ss_pred             HhCCCCCC--CeEEEeCC--CCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----C
Q psy2408          82 NKTSITKG--QRFIDIGC--GFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----P  151 (298)
Q Consensus        82 ~~~~~~~~--~~vLDiGc--G~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~  151 (298)
                      +...+.++  .+||=.|+  |.|..+..+++..|+ +|++++.+++..+.+++.+   |..   .++..+-.++     .
T Consensus       146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~---~vi~~~~~~~~~~i~~  219 (345)
T cd08293         146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFD---AAINYKTDNVAERLRE  219 (345)
T ss_pred             HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCc---EEEECCCCCHHHHHHH
Confidence            33345555  89999986  357788888887888 7999999988777766532   332   1222211111     1


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .....+|+|+-..     .. ..+....++|+++|+++...
T Consensus       220 ~~~~gvd~vid~~-----g~-~~~~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         220 LCPEGVDVYFDNV-----GG-EISDTVISQMNENSHIILCG  254 (345)
T ss_pred             HCCCCceEEEECC-----Cc-HHHHHHHHHhccCCEEEEEe
Confidence            1124689887432     12 23567888999999988653

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=93.59  E-value=1  Score=40.42  Aligned_cols=102  Identities=20%  Similarity=0.260  Sum_probs=62.6

Q ss_pred             hCCCCCCCeEEEeC-CCC-CHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhc----CCCCceEEEEC----CCCC
Q psy2408          83 KTSITKGQRFIDIG-CGF-GLSGIRLAKAKGC---RVDGITISKFQQESAMKTAKAE----GLLDKVNFLHG----DALN  149 (298)
Q Consensus        83 ~~~~~~~~~vLDiG-cG~-G~~~~~l~~~~~~---~v~~vD~s~~~l~~a~~~~~~~----~~~~~i~~~~~----d~~~  149 (298)
                      ...+.++.+||=+| +|. |..+..+++..|.   +|+++|.++..++.+++.....    |.  ...++..    +..+
T Consensus       170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~  247 (410)
T cd08238         170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHA  247 (410)
T ss_pred             hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHH
Confidence            34567888999997 454 7777778876543   7999999999999887753211    11  0112211    1100


Q ss_pred             -C-C-CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEE
Q psy2408         150 -L-P-FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLT  191 (298)
Q Consensus       150 -~-~-~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~  191 (298)
                       + . .....+|+|+..     ...+..+....+.++++|.+++.
T Consensus       248 ~v~~~t~g~g~D~vid~-----~g~~~~~~~a~~~l~~~G~~v~~  287 (410)
T cd08238         248 TLMELTGGQGFDDVFVF-----VPVPELVEEADTLLAPDGCLNFF  287 (410)
T ss_pred             HHHHHhCCCCCCEEEEc-----CCCHHHHHHHHHHhccCCeEEEE
Confidence             0 0 122468887642     22236777888999988876653

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.59  E-value=2  Score=37.20  Aligned_cols=147  Identities=12%  Similarity=0.061  Sum_probs=78.5

Q ss_pred             CCeEEEeCCCC-CH-HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-------hcCCC-----CceEEEECCCCCCCCCC
Q psy2408          89 GQRFIDIGCGF-GL-SGIRLAKAKGCRVDGITISKFQQESAMKTAK-------AEGLL-----DKVNFLHGDALNLPFDN  154 (298)
Q Consensus        89 ~~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~-------~~~~~-----~~i~~~~~d~~~~~~~~  154 (298)
                      -.+|--||+|+ |. ++..++. .|..|+..|++++.++.++..+.       +.++.     .++++. .++.+ .  -
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~-a--v   81 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALA-HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA-C--V   81 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH-H--h
Confidence            35788899986 33 3333444 68999999999998877666433       12211     112211 11111 0  1


Q ss_pred             CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh--------hcc-----------
Q psy2408         155 DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK--------NIH-----------  214 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--------~~~-----------  214 (298)
                      ...|+|+-+ +.+...-. .+++++.+.++|+. ++.+..+.   .. ...+......        +..           
T Consensus        82 ~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~---l~-~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv  155 (321)
T PRK07066         82 ADADFIQES-APEREALKLELHERISRAAKPDA-IIASSTSG---LL-PTDFYARATHPERCVVGHPFNPVYLLPLVEVL  155 (321)
T ss_pred             cCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCe-EEEECCCc---cC-HHHHHHhcCCcccEEEEecCCccccCceEEEe
Confidence            346766532 33333334 88999999999987 33333221   11 1122111110        000           


Q ss_pred             cCCCC----cchHHHHHHhCCCcEEEE-EeCCCCccc
Q psy2408         215 SNFIL----VEHYPDLLNKSGFELIKI-DDITSHVMP  246 (298)
Q Consensus       215 ~~~~~----~~~~~~~l~~~Gf~~~~~-~~~~~~~~~  246 (298)
                      +...|    .+...+++++.|...+.+ .+.+..+.+
T Consensus       156 ~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~N  192 (321)
T PRK07066        156 GGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIAD  192 (321)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHHH
Confidence            01122    234467888899988887 577766665

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=93.59  E-value=1.4  Score=40.76  Aligned_cols=118  Identities=14%  Similarity=0.122  Sum_probs=71.2

Q ss_pred             HHHHHHHHhCCC--CCCCeEEEeCCCCCHHHHHHHHhc--C---CeEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEECC
Q psy2408          75 KLSRIMINKTSI--TKGQRFIDIGCGFGLSGIRLAKAK--G---CRVDGITISKFQQESAMKTAKAEGLLD-KVNFLHGD  146 (298)
Q Consensus        75 ~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~--~---~~v~~vD~s~~~l~~a~~~~~~~~~~~-~i~~~~~d  146 (298)
                      .+++.+.+.+..  .|+..|.|..||+|.+........  +   ..++|.+....+...++..+.-.+... ......+|
T Consensus       202 ~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~d  281 (501)
T TIGR00497       202 DISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINAD  281 (501)
T ss_pred             HHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCC
Confidence            344444443332  256799999999999876544322  2   469999999999999998865554421 22222333


Q ss_pred             CCC-CCC-CCCCeeEEEecc------------------------cccccChH--HHHHHHhhcccCCcEEEEEe
Q psy2408         147 ALN-LPF-DNDSFDGGWFFE------------------------SIFHMNHS--AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       147 ~~~-~~~-~~~~fD~V~~~~------------------------~l~~~~~~--~~l~~~~r~LkpgG~l~i~~  192 (298)
                      -.. ..+ ....||.|+++-                        .+.+..+.  .++..+...|++||+..+.-
T Consensus       282 tl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~  355 (501)
T TIGR00497       282 TLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC  355 (501)
T ss_pred             cCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence            222 111 124567666422                        11122223  88999999999999855543

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=93.49  E-value=0.44  Score=41.68  Aligned_cols=100  Identities=18%  Similarity=0.224  Sum_probs=64.5

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----C-CC
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----P-FD  153 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~  153 (298)
                      ....+.++.+||-.|+|. |..+..+++..|. .++++|.+++..+.++..    +..   .++...-.++     . ..
T Consensus       160 ~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~v~~~~~~~~~~i~~~~~  232 (351)
T cd08285         160 ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----GAT---DIVDYKNGDVVEQILKLTG  232 (351)
T ss_pred             HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc---eEecCCCCCHHHHHHHHhC
Confidence            455677889999998874 6667777776787 599999998877776642    321   1222111111     1 12


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ...+|+|+-.     ......+..+.+.|+++|+++....
T Consensus       233 ~~~~d~vld~-----~g~~~~~~~~~~~l~~~G~~v~~g~  267 (351)
T cd08285         233 GKGVDAVIIA-----GGGQDTFEQALKVLKPGGTISNVNY  267 (351)
T ss_pred             CCCCcEEEEC-----CCCHHHHHHHHHHhhcCCEEEEecc
Confidence            3468988642     2223567888999999999886543

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=93.42  E-value=0.4  Score=42.31  Aligned_cols=102  Identities=22%  Similarity=0.320  Sum_probs=64.5

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC-C-C----C-C
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA-L-N----L-P  151 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~-~-~----~-~  151 (298)
                      .+...+.++.+||=.|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++..+- . .    + .
T Consensus       180 ~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~v~~  252 (369)
T cd08301         180 WNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF----GVT---EFVNPKDHDKPVQEVIAE  252 (369)
T ss_pred             HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEEcccccchhHHHHHHH
Confidence            3445678899999999864 6666777776787 799999999888877542    321   1221110 0 0    0 0


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeCC
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDLP  194 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~  194 (298)
                      ...+.+|+|+-     .......+....+.++++ |++++....
T Consensus       253 ~~~~~~d~vid-----~~G~~~~~~~~~~~~~~~~g~~v~~g~~  291 (369)
T cd08301         253 MTGGGVDYSFE-----CTGNIDAMISAFECVHDGWGVTVLLGVP  291 (369)
T ss_pred             HhCCCCCEEEE-----CCCChHHHHHHHHHhhcCCCEEEEECcC
Confidence            11235787753     223345667778888996 998876543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=93.41  E-value=1.1  Score=38.72  Aligned_cols=100  Identities=19%  Similarity=0.146  Sum_probs=64.8

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC----CCCCC
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL----PFDND  155 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~  155 (298)
                      ....+.++.+||-+|+|. |..+..+++..|.+ +++++.+++..+.+++.    +..   .++..+-...    ....+
T Consensus       153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~  225 (334)
T cd08234         153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT---ETVDPSREDPEAQKEDNPY  225 (334)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe---EEecCCCCCHHHHHHhcCC
Confidence            456677889999998763 66667777767876 89999998887776433    321   2222211110    11235


Q ss_pred             CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .+|+++.+.     .....+..+.+.|+++|+++....
T Consensus       226 ~vd~v~~~~-----~~~~~~~~~~~~l~~~G~~v~~g~  258 (334)
T cd08234         226 GFDVVIEAT-----GVPKTLEQAIEYARRGGTVLVFGV  258 (334)
T ss_pred             CCcEEEECC-----CChHHHHHHHHHHhcCCEEEEEec
Confidence            689987532     122567788899999999887544

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=93.37  E-value=0.7  Score=40.17  Aligned_cols=102  Identities=20%  Similarity=0.142  Sum_probs=65.0

Q ss_pred             HhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCCC-C-CCCCCC
Q psy2408          82 NKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DALN-L-PFDNDS  156 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~  156 (298)
                      +...+.+|.+||=.|+ | .|..+..+++..|+++++++.+++..+.+++.+   |...-+..... +..+ + ....+.
T Consensus       145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~g  221 (338)
T cd08295         145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNG  221 (338)
T ss_pred             HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHHHHHhCCCC
Confidence            4456788999999986 3 477777888878999999999988777776532   32111111111 1111 0 111246


Q ss_pred             eeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         157 FDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +|+|+-..     .. ..+....++|+++|+++...
T Consensus       222 vd~v~d~~-----g~-~~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         222 IDIYFDNV-----GG-KMLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             cEEEEECC-----CH-HHHHHHHHHhccCcEEEEec
Confidence            88886422     22 46678889999999988654

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.27  E-value=2.1  Score=30.55  Aligned_cols=84  Identities=18%  Similarity=0.152  Sum_probs=54.5

Q ss_pred             CCCCHHHHHHHHhc--C-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEEeccccccc
Q psy2408          97 CGFGLSGIRLAKAK--G-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGWFFESIFHM  169 (298)
Q Consensus        97 cG~G~~~~~l~~~~--~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~~~l~~~  169 (298)
                      ||.|..+..+++.+  + ..|+.+|.+++.++.++..        .+.++.+|..+..    ..-++.|.|++...    
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----   71 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVILTD----   71 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEESS----
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEccC----
Confidence            56677888887753  4 4899999999887777654        2678999998742    22356787765322    


Q ss_pred             ChH--HHHHHHhhcccCCcEEEEEe
Q psy2408         170 NHS--AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       170 ~~~--~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .+.  ..+....+-+.|...++...
T Consensus        72 ~d~~n~~~~~~~r~~~~~~~ii~~~   96 (116)
T PF02254_consen   72 DDEENLLIALLARELNPDIRIIARV   96 (116)
T ss_dssp             SHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred             CHHHHHHHHHHHHHHCCCCeEEEEE
Confidence            222  44445556677877777653

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=93.06  E-value=0.36  Score=42.00  Aligned_cols=98  Identities=20%  Similarity=0.228  Sum_probs=62.8

Q ss_pred             hCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC---CCC-C-CCCC
Q psy2408          83 KTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA---LNL-P-FDND  155 (298)
Q Consensus        83 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~---~~~-~-~~~~  155 (298)
                      ...+.++.+||-.|+|. |..+..+++..|.. +++++.++...+.++..    +..   .++...-   ..+ . .+..
T Consensus       154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~----g~~---~~~~~~~~~~~~~~~~~~~~  226 (343)
T cd08236         154 LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL----GAD---DTINPKEEDVEKVRELTEGR  226 (343)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCC---EEecCccccHHHHHHHhCCC
Confidence            45667888999998765 66777777777886 99999888777666432    321   1222111   111 1 1224


Q ss_pred             CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .+|+|+.+     ......+..+.++|+++|+++...
T Consensus       227 ~~d~vld~-----~g~~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         227 GADLVIEA-----AGSPATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             CCCEEEEC-----CCCHHHHHHHHHHhhcCCEEEEEc
Confidence            58988753     222356778899999999987764

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=93.04  E-value=0.27  Score=43.01  Aligned_cols=103  Identities=18%  Similarity=0.180  Sum_probs=63.8

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-C-C-CCCCC
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-L-P-FDNDS  156 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~  156 (298)
                      ....+.++.+||=.|+|. |..+..+++..|+ .|++++.+++..+.+++.    +...-+.....+..+ + . .....
T Consensus       166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~  241 (351)
T cd08233         166 RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGG  241 (351)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCC
Confidence            455677889999998764 5666666776788 899999999888777542    321111111111100 0 0 12235


Q ss_pred             eeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         157 FDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +|+|+-..     .....+..+.+.|+++|+++....
T Consensus       242 ~d~vid~~-----g~~~~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         242 VDVSFDCA-----GVQATLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             CCEEEECC-----CCHHHHHHHHHhccCCCEEEEEcc
Confidence            89886432     223467788899999999887644

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=93.02  E-value=0.41  Score=37.64  Aligned_cols=98  Identities=18%  Similarity=0.097  Sum_probs=56.0

Q ss_pred             eEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------cC-CC--------CceEEEECCCCCCCCC
Q psy2408          91 RFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA-------EG-LL--------DKVNFLHGDALNLPFD  153 (298)
Q Consensus        91 ~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~-~~--------~~i~~~~~d~~~~~~~  153 (298)
                      +|.-+|+|+ |.-...+....|.+|+.+|.+++.++.+++.+..       .+ +.        .+++ ...|+.+.   
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~---   76 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA---   76 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG---
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH---
Confidence            356678876 4332222222589999999999999988887654       11 11        1333 34444443   


Q ss_pred             CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                       ...|+|+= .+.+.+.-. .+++++.+++.|+..|.-....
T Consensus        77 -~~adlViE-ai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs  116 (180)
T PF02737_consen   77 -VDADLVIE-AIPEDLELKQELFAELDEICPPDTILASNTSS  116 (180)
T ss_dssp             -CTESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred             -hhhheehh-hccccHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence             25677642 122333334 9999999999999876665433

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=93.00  E-value=1.9  Score=37.80  Aligned_cols=95  Identities=26%  Similarity=0.204  Sum_probs=59.8

Q ss_pred             CCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-------C-C-CCCC
Q psy2408          87 TKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-------L-P-FDND  155 (298)
Q Consensus        87 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-------~-~-~~~~  155 (298)
                      .++.+||=.|+|. |..+..+++..|+ ++++++.+++..+.+++    .+..   .++...-..       + . ....
T Consensus       176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~~~  248 (361)
T cd08231         176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGAD---ATIDIDELPDPQRRAIVRDITGGR  248 (361)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCC---eEEcCcccccHHHHHHHHHHhCCC
Confidence            4788999998764 6666777777788 89999998877666643    2332   122111110       0 0 1234


Q ss_pred             CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .+|+|+-..     .....+....+.|+++|+++....
T Consensus       249 ~~d~vid~~-----g~~~~~~~~~~~l~~~G~~v~~g~  281 (361)
T cd08231         249 GADVVIEAS-----GHPAAVPEGLELLRRGGTYVLVGS  281 (361)
T ss_pred             CCcEEEECC-----CChHHHHHHHHHhccCCEEEEEcC
Confidence            689887432     112456778899999999987543

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=92.94  E-value=2.8  Score=36.07  Aligned_cols=96  Identities=24%  Similarity=0.245  Sum_probs=62.8

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEE
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGG  160 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V  160 (298)
                      ...++.++.+||=.|||. |..+..+++..|.++++++.++...+.+++    .+..   .++..  ...  +.+.+|++
T Consensus       161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~--~~~--~~~~vD~v  229 (329)
T cd08298         161 KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGAD---WAGDS--DDL--PPEPLDAA  229 (329)
T ss_pred             HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCc---EEecc--Ccc--CCCcccEE
Confidence            556677888999888774 555566667678899999998876666643    2321   11111  111  23468887


Q ss_pred             EecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         161 WFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       161 ~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +...     .....+..+.+.|+++|+++....
T Consensus       230 i~~~-----~~~~~~~~~~~~l~~~G~~v~~g~  257 (329)
T cd08298         230 IIFA-----PVGALVPAALRAVKKGGRVVLAGI  257 (329)
T ss_pred             EEcC-----CcHHHHHHHHHHhhcCCEEEEEcC
Confidence            6431     112578889999999999987653

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=92.84  E-value=1.3  Score=38.93  Aligned_cols=96  Identities=28%  Similarity=0.251  Sum_probs=58.6

Q ss_pred             CCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE-CCCCCCCCCCCCeeEEEecc
Q psy2408          87 TKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH-GDALNLPFDNDSFDGGWFFE  164 (298)
Q Consensus        87 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~V~~~~  164 (298)
                      .++.+||-.|+|. |..+..+++..|+++++++.+++....+.+.   .|..   .++. .+...+.-....+|+|+-. 
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~Ga~---~~i~~~~~~~~~~~~~~~D~vid~-  251 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LGAD---DYLVSSDAAEMQEAADSLDYIIDT-  251 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cCCc---EEecCCChHHHHHhcCCCcEEEEC-
Confidence            5788999888775 7777777887788899998887655544332   2321   1111 1111110001247877532 


Q ss_pred             cccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         165 SIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       165 ~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                          ......+..+.+.|+++|+++....
T Consensus       252 ----~g~~~~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        252 ----VPVFHPLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             ----CCchHHHHHHHHHhccCCEEEEECC
Confidence                2323567778889999999887654

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=92.84  E-value=0.24  Score=43.72  Aligned_cols=100  Identities=21%  Similarity=0.263  Sum_probs=63.8

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCCC
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFDN  154 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~  154 (298)
                      ....+.++.+||-.|+|. |..+..+++..|. .++++|.++...+.+++.    +..   .++..+-..+     ....
T Consensus       180 ~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~---~~i~~~~~~~~~~v~~~~~  252 (365)
T cd08278         180 NVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GAT---HVINPKEEDLVAAIREITG  252 (365)
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc---EEecCCCcCHHHHHHHHhC
Confidence            344567889999998865 6777777777787 699999998877766543    221   2222111111     0113


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ..+|+|+-..     .....+..+.+.|+++|+++....
T Consensus       253 ~~~d~vld~~-----g~~~~~~~~~~~l~~~G~~v~~g~  286 (365)
T cd08278         253 GGVDYALDTT-----GVPAVIEQAVDALAPRGTLALVGA  286 (365)
T ss_pred             CCCcEEEECC-----CCcHHHHHHHHHhccCCEEEEeCc
Confidence            4688886432     222467788899999999887543

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>TIGR00518 alaDH alanine dehydrogenase

Probab=92.83  E-value=0.18  Score=44.50  Aligned_cols=101  Identities=15%  Similarity=0.082  Sum_probs=56.9

Q ss_pred             CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          88 KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        88 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      ++.+|+=+|+|. |..+...+...|++|+++|.++..++.+...+   +  ..+.....+...+.---..+|+|+..-..
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~~  240 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVLI  240 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEcccc
Confidence            346799999985 66677777767889999999987666554332   1  11111111111111001468999864322


Q ss_pred             cccChH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         167 FHMNHS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .-.+.+ -+-++..+.++|++.++-...
T Consensus       241 ~g~~~p~lit~~~l~~mk~g~vIvDva~  268 (370)
T TIGR00518       241 PGAKAPKLVSNSLVAQMKPGAVIVDVAI  268 (370)
T ss_pred             CCCCCCcCcCHHHHhcCCCCCEEEEEec
Confidence            111222 223555677899987665443

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=92.65  E-value=1.9  Score=38.55  Aligned_cols=106  Identities=15%  Similarity=0.096  Sum_probs=65.4

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC---CCCC-C-C-CC
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHG---DALN-L-P-FD  153 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~---d~~~-~-~-~~  153 (298)
                      ....+.++.+||=.|+|. |..+..+++..|++ ++.+|.++..++.+++.    |..   .+...   +..+ + . ..
T Consensus       179 ~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~---~v~~~~~~~~~~~v~~~~~  251 (393)
T TIGR02819       179 VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE---TVDLSKDATLPEQIEQILG  251 (393)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe---EEecCCcccHHHHHHHHcC
Confidence            345667888998888875 77777777767775 56678888878877653    321   12111   1111 1 0 12


Q ss_pred             CCCeeEEEecccccc--------cChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         154 NDSFDGGWFFESIFH--------MNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~--------~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ...+|+|+-.-....        -.++ ..+++..+++++||++++....
T Consensus       252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence            246898874322110        0122 5788899999999999987654

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=92.59  E-value=0.58  Score=39.02  Aligned_cols=76  Identities=18%  Similarity=0.161  Sum_probs=49.0

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK------GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA  147 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~------~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~  147 (298)
                      ..+...+.+.--+.+...++|+|||.|.++.++++..      ...++.||-..... .+-..+........+.-+..|+
T Consensus         4 sSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI   82 (259)
T PF05206_consen    4 SSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDI   82 (259)
T ss_pred             HHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEe
Confidence            3455555555555678899999999999999999864      25789999855332 2233333322112355666677


Q ss_pred             CCC
Q psy2408         148 LNL  150 (298)
Q Consensus       148 ~~~  150 (298)
                      .++
T Consensus        83 ~dl   85 (259)
T PF05206_consen   83 KDL   85 (259)
T ss_pred             ecc
Confidence            665

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=92.49  E-value=0.28  Score=42.64  Aligned_cols=97  Identities=16%  Similarity=0.226  Sum_probs=60.6

Q ss_pred             CCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCCCC
Q psy2408          84 TSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFDND  155 (298)
Q Consensus        84 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~  155 (298)
                      ..+.++.+||-.|+|. |..+..+++..|. .+++++.++...+.+++.    +..   .++...-..+      ..+.+
T Consensus       163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~i~~~~~~~  235 (347)
T cd05278         163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GAT---DIINPKNGDIVEQILELTGGR  235 (347)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCc---EEEcCCcchHHHHHHHHcCCC
Confidence            4556788999987763 6667777776775 788998888777666543    211   1221111111      01235


Q ss_pred             CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .+|+++...     .....+....+.|+++|+++...
T Consensus       236 ~~d~vld~~-----g~~~~~~~~~~~l~~~G~~v~~g  267 (347)
T cd05278         236 GVDCVIEAV-----GFEETFEQAVKVVRPGGTIANVG  267 (347)
T ss_pred             CCcEEEEcc-----CCHHHHHHHHHHhhcCCEEEEEc
Confidence            689887532     11147778889999999988654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=92.07  E-value=1.1  Score=39.64  Aligned_cols=95  Identities=25%  Similarity=0.178  Sum_probs=58.2

Q ss_pred             CCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHH-HHHHHHHHHhcCCCCceEEEEC-CCCCCCCCCCCeeEEEec
Q psy2408          87 TKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQ-QESAMKTAKAEGLLDKVNFLHG-DALNLPFDNDSFDGGWFF  163 (298)
Q Consensus        87 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~-l~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~fD~V~~~  163 (298)
                      .++.+||-.|+|. |..+..+++..|+++++++.+++. .+.++    ..|..   .++.. +...+.-..+.+|+|+-.
T Consensus       177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~----~lGa~---~~i~~~~~~~v~~~~~~~D~vid~  249 (375)
T PLN02178        177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID----RLGAD---SFLVTTDSQKMKEAVGTMDFIIDT  249 (375)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH----hCCCc---EEEcCcCHHHHHHhhCCCcEEEEC
Confidence            4788999999875 777777788779999999987543 33332    23331   12211 100110001247877642


Q ss_pred             ccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         164 ESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       164 ~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                           ...+..+....+.++++|+++....
T Consensus       250 -----~G~~~~~~~~~~~l~~~G~iv~vG~  274 (375)
T PLN02178        250 -----VSAEHALLPLFSLLKVSGKLVALGL  274 (375)
T ss_pred             -----CCcHHHHHHHHHhhcCCCEEEEEcc
Confidence                 2233567788899999999987654

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=92.00  E-value=3.9  Score=31.50  Aligned_cols=107  Identities=12%  Similarity=0.128  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      .....+++.+.+..  .++.+|+-|||=+-.....-....+.++..+|++...-.        .+  ++ .|+.-|....
T Consensus        10 ~T~~~l~~~l~~~~--~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~--------~~--~~-~F~fyD~~~p   76 (162)
T PF10237_consen   10 ETAEFLARELLDGA--LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQ--------FG--GD-EFVFYDYNEP   76 (162)
T ss_pred             HHHHHHHHHHHHhc--CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHh--------cC--Cc-ceEECCCCCh
Confidence            45566666666554  356799999997744433331124678999999864332        11  23 4666676653


Q ss_pred             -CCC---CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEe
Q psy2408         151 -PFD---NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       151 -~~~---~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~  192 (298)
                       .++   .++||+|++---+  +...   .+...+.-++++++.+++..
T Consensus        77 ~~~~~~l~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~T  123 (162)
T PF10237_consen   77 EELPEELKGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCT  123 (162)
T ss_pred             hhhhhhcCCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEec
Confidence             111   4799999986555  3343   45556666668888888763

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK10458 DNA cytosine methylase; Provisional

Probab=91.97  E-value=3.9  Score=37.31  Aligned_cols=58  Identities=17%  Similarity=0.118  Sum_probs=40.3

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      ..+++|+-||.|.+..-+-. .|. .|.++|+++...+.-+.++...   +.......|+.++
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~-aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i  146 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEA-IGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDI  146 (467)
T ss_pred             CceEEEeCcCccHHHHHHHH-cCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhC
Confidence            56999999999999988876 454 6788999987777666554211   1234455666655

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=91.95  E-value=3.6  Score=33.04  Aligned_cols=102  Identities=17%  Similarity=0.049  Sum_probs=64.4

Q ss_pred             CCCeEEEeCCCCCH--HHHHHH--Hh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-CCCCCCCeeEEE
Q psy2408          88 KGQRFIDIGCGFGL--SGIRLA--KA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-LPFDNDSFDGGW  161 (298)
Q Consensus        88 ~~~~vLDiGcG~G~--~~~~l~--~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~V~  161 (298)
                      ....++++.|+.|.  .++.|+  .+ .|.++++|-+++..+...++.+...++.+.++|+.++..+ +-..-...|.++
T Consensus        41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v  120 (218)
T PF07279_consen   41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV  120 (218)
T ss_pred             cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence            34578888665432  344443  32 4889999999999988888888888887778999888533 211124688876


Q ss_pred             ecccccccChHHHHHHHhhcc--cCCcEEEEEeCC
Q psy2408         162 FFESIFHMNHSAALNEARRVL--KSGSILTLTDLP  194 (298)
Q Consensus       162 ~~~~l~~~~~~~~l~~~~r~L--kpgG~l~i~~~~  194 (298)
                      ...-..     ++.+++.+++  .|.|.+++....
T Consensus       121 VDc~~~-----d~~~~vl~~~~~~~~GaVVV~~Na  150 (218)
T PF07279_consen  121 VDCKRE-----DFAARVLRAAKLSPRGAVVVCYNA  150 (218)
T ss_pred             EeCCch-----hHHHHHHHHhccCCCceEEEEecc
Confidence            533221     3333444444  456776665443

The function of this family is unknown.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=91.89  E-value=1.4  Score=39.40  Aligned_cols=101  Identities=16%  Similarity=0.129  Sum_probs=63.0

Q ss_pred             HHHHHHHhCCC-CCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          76 LSRIMINKTSI-TKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        76 ~~~~l~~~~~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+.+++..++ -.|.+|+-+|+|. |......++..|++|+++|.++.....+..    .|    ..+.  +..+. . 
T Consensus       181 ~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G----~~v~--~leea-l-  248 (406)
T TIGR00936       181 TIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DG----FRVM--TMEEA-A-  248 (406)
T ss_pred             HHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cC----CEeC--CHHHH-H-
Confidence            34445544332 4788999999997 777777777679999999998864433321    12    1121  22221 1 


Q ss_pred             CCCeeEEEecccccccChHHHHH-HHhhcccCCcEEEEEeCC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALN-EARRVLKSGSILTLTDLP  194 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~-~~~r~LkpgG~l~i~~~~  194 (298)
                       ...|+|+..     ...+..+. +....+|+|++++.....
T Consensus       249 -~~aDVVIta-----TG~~~vI~~~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       249 -KIGDIFITA-----TGNKDVIRGEHFENMKDGAIVANIGHF  284 (406)
T ss_pred             -hcCCEEEEC-----CCCHHHHHHHHHhcCCCCcEEEEECCC
Confidence             346888653     23344554 488899999988876544

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=91.87  E-value=1.4  Score=34.70  Aligned_cols=88  Identities=15%  Similarity=0.154  Sum_probs=53.7

Q ss_pred             CeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC--CCceEEEECCCCCC---------CCCCCCe
Q psy2408          90 QRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGL--LDKVNFLHGDALNL---------PFDNDSF  157 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~i~~~~~d~~~~---------~~~~~~f  157 (298)
                      ..|+.+|||.=.....+.... +.++.-+|. ++.++.-++.++..+.  +.+.+++..|+.+.         .+..+..
T Consensus        80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p  158 (183)
T PF04072_consen   80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP  158 (183)
T ss_dssp             SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred             cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence            499999999988888887754 556777776 4455555555554321  12356799998862         1334566


Q ss_pred             eEEEecccccccChH---HHHHHH
Q psy2408         158 DGGWFFESIFHMNHS---AALNEA  178 (298)
Q Consensus       158 D~V~~~~~l~~~~~~---~~l~~~  178 (298)
                      -++++-+++.+++..   .+++.+
T Consensus       159 tl~i~Egvl~Yl~~~~~~~ll~~i  182 (183)
T PF04072_consen  159 TLFIAEGVLMYLSPEQVDALLRAI  182 (183)
T ss_dssp             EEEEEESSGGGS-HHHHHHHHHHH
T ss_pred             eEEEEcchhhcCCHHHHHHHHHHh
Confidence            788888889999876   555543

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PRK11524 putative methyltransferase; Provisional

Probab=91.82  E-value=0.15  Score=43.33  Aligned_cols=53  Identities=23%  Similarity=0.272  Sum_probs=37.3

Q ss_pred             ceEEEECCCCCC--CCCCCCeeEEEeccccc----------------ccChH-HHHHHHhhcccCCcEEEEE
Q psy2408         139 KVNFLHGDALNL--PFDNDSFDGGWFFESIF----------------HMNHS-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       139 ~i~~~~~d~~~~--~~~~~~fD~V~~~~~l~----------------~~~~~-~~l~~~~r~LkpgG~l~i~  191 (298)
                      +..++++|+.+.  .+++++||+|++.=-..                +..-. ..+.++.|+|||||.+++.
T Consensus         8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            356788888774  45678899998842211                00111 6889999999999999985

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=91.75  E-value=0.61  Score=41.08  Aligned_cols=105  Identities=23%  Similarity=0.303  Sum_probs=64.0

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC--CCCC-C-CCCC
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHG--DALN-L-PFDN  154 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~  154 (298)
                      .....+.++.+||=.|+|. |..+..+++..|.. +++++.++...+.+++.    +...-+.....  +... + ....
T Consensus       176 ~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~~~l~~~~~  251 (365)
T cd05279         176 VNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL----GATECINPRDQDKPIVEVLTEMTD  251 (365)
T ss_pred             HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCCeecccccccchHHHHHHHHhC
Confidence            3455677889999998764 66666677767774 88899888887777442    32111111111  1100 0 0112


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhccc-CCcEEEEEeCC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLK-SGSILTLTDLP  194 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~Lk-pgG~l~i~~~~  194 (298)
                      +.+|+|+-.     ......+....+.|+ ++|+++.....
T Consensus       252 ~~~d~vid~-----~g~~~~~~~~~~~l~~~~G~~v~~g~~  287 (365)
T cd05279         252 GGVDYAFEV-----IGSADTLKQALDATRLGGGTSVVVGVP  287 (365)
T ss_pred             CCCcEEEEC-----CCCHHHHHHHHHHhccCCCEEEEEecC
Confidence            468888642     223356777888899 99998876543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>KOG0023|consensus

Probab=91.49  E-value=0.82  Score=38.96  Aligned_cols=103  Identities=25%  Similarity=0.303  Sum_probs=64.3

Q ss_pred             HHhCCCCCCCeEEEeCCC-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC--CCC---C-CCC
Q psy2408          81 INKTSITKGQRFIDIGCG-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD--ALN---L-PFD  153 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d--~~~---~-~~~  153 (298)
                      +...++.||++|--+|.| -|.++..+++.+|.+|+++|-+..--+.+-+.   .|-+   .|+..-  -..   + ..-
T Consensus       174 Lk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~---LGAd---~fv~~~~d~d~~~~~~~~~  247 (360)
T KOG0023|consen  174 LKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKS---LGAD---VFVDSTEDPDIMKAIMKTT  247 (360)
T ss_pred             hHHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHh---cCcc---eeEEecCCHHHHHHHHHhh
Confidence            345566799888777765 59999999998999999999987444444333   2322   122211  110   0 011


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      +.-.|.|...       ....+..+.++||++|.+++......
T Consensus       248 dg~~~~v~~~-------a~~~~~~~~~~lk~~Gt~V~vg~p~~  283 (360)
T KOG0023|consen  248 DGGIDTVSNL-------AEHALEPLLGLLKVNGTLVLVGLPEK  283 (360)
T ss_pred             cCcceeeeec-------cccchHHHHHHhhcCCEEEEEeCcCC
Confidence            3344444422       11456678889999999999876644

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=91.48  E-value=0.66  Score=40.82  Aligned_cols=101  Identities=19%  Similarity=0.270  Sum_probs=63.7

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CC
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PF  152 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~  152 (298)
                      .....+.++.+||-.|+|. |..+..+++..|.. |++++.++...+.+++.    +.   ..++...-..+      ..
T Consensus       175 ~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~----g~---~~vv~~~~~~~~~~l~~~~  247 (363)
T cd08279         175 VNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRF----GA---THTVNASEDDAVEAVRDLT  247 (363)
T ss_pred             HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHh----CC---eEEeCCCCccHHHHHHHHc
Confidence            3445667888999998763 66677777777885 99999988877766432    32   12222211111      01


Q ss_pred             CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +...+|+++...     .....+..+.+.|+++|+++....
T Consensus       248 ~~~~vd~vld~~-----~~~~~~~~~~~~l~~~G~~v~~g~  283 (363)
T cd08279         248 DGRGADYAFEAV-----GRAATIRQALAMTRKGGTAVVVGM  283 (363)
T ss_pred             CCCCCCEEEEcC-----CChHHHHHHHHHhhcCCeEEEEec
Confidence            235689886422     222567788999999999887643

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=91.44  E-value=1.6  Score=37.94  Aligned_cols=101  Identities=21%  Similarity=0.247  Sum_probs=62.1

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC----CCCCCCCC
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA----LNLPFDND  155 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~----~~~~~~~~  155 (298)
                      ....+.++.+||=.|+|. |..+..+++..| .++++++.++.....+++.    +...-+.....+.    ..+ .+..
T Consensus       160 ~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~i~~~-~~~~  234 (345)
T cd08286         160 LNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL----GATHTVNSAKGDAIEQVLEL-TDGR  234 (345)
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCceeccccccHHHHHHHH-hCCC
Confidence            344567888888888764 555666677678 7899999988776666532    3211111111111    111 1234


Q ss_pred             CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .+|+|+..     ......+..+.+.|+++|+++...
T Consensus       235 ~~d~vld~-----~g~~~~~~~~~~~l~~~g~~v~~g  266 (345)
T cd08286         235 GVDVVIEA-----VGIPATFELCQELVAPGGHIANVG  266 (345)
T ss_pred             CCCEEEEC-----CCCHHHHHHHHHhccCCcEEEEec
Confidence            68988643     233456788889999999988654

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>KOG2352|consensus

Probab=91.27  E-value=0.46  Score=42.69  Aligned_cols=110  Identities=15%  Similarity=0.076  Sum_probs=74.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-------CCCCCCeeE
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-------PFDNDSFDG  159 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~~fD~  159 (298)
                      .+..+|-+|-|.|.+...+.... ..++++|++.+.++..+...+.-..- .+..+...|..+.       .-.+..||+
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv  373 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV  373 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence            34578888989899988887765 47999999999999999988653221 1233444443321       123567898


Q ss_pred             EEe----ccccccc--ChH-----HHHHHHhhcccCCcEEEEEeCCCCCCC
Q psy2408         160 GWF----FESIFHM--NHS-----AALNEARRVLKSGSILTLTDLPLLSVS  199 (298)
Q Consensus       160 V~~----~~~l~~~--~~~-----~~l~~~~r~LkpgG~l~i~~~~~~~~~  199 (298)
                      ++.    .. .+-+  +.+     .+|..+..+|.|.|.++|.-.......
T Consensus       374 l~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~  423 (482)
T KOG2352|consen  374 LMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSF  423 (482)
T ss_pred             EEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcch
Confidence            874    12 2222  222     888999999999999988766544433

>PLN02494 adenosylhomocysteinase

Probab=91.27  E-value=0.84  Score=41.37  Aligned_cols=100  Identities=19%  Similarity=0.149  Sum_probs=62.6

Q ss_pred             HHHHHHHhCCC-CCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          76 LSRIMINKTSI-TKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        76 ~~~~l~~~~~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+.+++...+ -.|.+|+-+|+|. |......++..|++|+++|.++.....+...    +    ..+.  +..+. . 
T Consensus       240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~----G----~~vv--~leEa-l-  307 (477)
T PLN02494        240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME----G----YQVL--TLEDV-V-  307 (477)
T ss_pred             HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc----C----Ceec--cHHHH-H-
Confidence            35555555444 4689999999996 6666666665789999999988644333211    2    1111  22221 1 


Q ss_pred             CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                       ...|+|+..     .... -+..+....+|+||.|+....
T Consensus       308 -~~ADVVI~t-----TGt~~vI~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        308 -SEADIFVTT-----TGNKDIIMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             -hhCCEEEEC-----CCCccchHHHHHhcCCCCCEEEEcCC
Confidence             357888762     1222 334778889999999887644

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=91.26  E-value=1.6  Score=39.25  Aligned_cols=89  Identities=17%  Similarity=0.094  Sum_probs=57.1

Q ss_pred             CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          88 KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        88 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      .+.+|+-+|+|. |......++..|++|+.+|.++.....+..    .|    ..+  .++.+. .  ..+|+|+..-  
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G----~~v--~~l~ea-l--~~aDVVI~aT--  275 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DG----FRV--MTMEEA-A--ELGDIFVTAT--  275 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cC----CEe--cCHHHH-H--hCCCEEEECC--
Confidence            788999999996 666555566578999999999865433321    12    121  122221 1  3689887632  


Q ss_pred             cccChHHHHH-HHhhcccCCcEEEEEeCC
Q psy2408         167 FHMNHSAALN-EARRVLKSGSILTLTDLP  194 (298)
Q Consensus       167 ~~~~~~~~l~-~~~r~LkpgG~l~i~~~~  194 (298)
                         .....+. .....+|+|+.++.....
T Consensus       276 ---G~~~vI~~~~~~~mK~GailiNvG~~  301 (425)
T PRK05476        276 ---GNKDVITAEHMEAMKDGAILANIGHF  301 (425)
T ss_pred             ---CCHHHHHHHHHhcCCCCCEEEEcCCC
Confidence               3334554 678899999988776443

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=91.20  E-value=2  Score=36.76  Aligned_cols=127  Identities=17%  Similarity=0.176  Sum_probs=74.5

Q ss_pred             HHhCCCC-CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee
Q psy2408          81 INKTSIT-KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD  158 (298)
Q Consensus        81 ~~~~~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  158 (298)
                      ++..... .+.+|+=+|+|. |......++..|++|+++|.++...+.++.    .+    ..++.  ..++.---..+|
T Consensus       143 ~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~G----~~~~~--~~~l~~~l~~aD  212 (296)
T PRK08306        143 IEHTPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE----MG----LSPFH--LSELAEEVGKID  212 (296)
T ss_pred             HHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----Ceeec--HHHHHHHhCCCC
Confidence            3443333 578999999985 555555555578999999999876555432    22    22221  111111124689


Q ss_pred             EEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEE
Q psy2408         159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                      +|+..-     +..-+-++....++|++.++-.......  .                     ++ ...++.|-..+-..
T Consensus       213 iVI~t~-----p~~~i~~~~l~~~~~g~vIIDla~~pgg--t---------------------d~-~~a~~~Gv~~~~~~  263 (296)
T PRK08306        213 IIFNTI-----PALVLTKEVLSKMPPEALIIDLASKPGG--T---------------------DF-EYAEKRGIKALLAP  263 (296)
T ss_pred             EEEECC-----ChhhhhHHHHHcCCCCcEEEEEccCCCC--c---------------------Ce-eehhhCCeEEEEEC
Confidence            998742     2223345666778898765543222111  1                     11 24577888887778


Q ss_pred             eCCCCccc
Q psy2408         239 DITSHVMP  246 (298)
Q Consensus       239 ~~~~~~~~  246 (298)
                      .++..+.+
T Consensus       264 ~lpg~vap  271 (296)
T PRK08306        264 GLPGKVAP  271 (296)
T ss_pred             CCCccCCH
Confidence            88887754

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.77  E-value=5.9  Score=33.52  Aligned_cols=144  Identities=18%  Similarity=0.127  Sum_probs=76.4

Q ss_pred             eEEEeCCCC--CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH-------HhcCC-C--------CceEEEECCCCCCCC
Q psy2408          91 RFIDIGCGF--GLSGIRLAKAKGCRVDGITISKFQQESAMKTA-------KAEGL-L--------DKVNFLHGDALNLPF  152 (298)
Q Consensus        91 ~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~-------~~~~~-~--------~~i~~~~~d~~~~~~  152 (298)
                      +|-=||+|.  +.++..++. .|.+|+++|++++.++.++.++       .+.+. .        .++.+ ..|...   
T Consensus         5 kI~VIG~G~mG~~ia~~la~-~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~---   79 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAV-AGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD---   79 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHH-CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence            577788875  333444444 5789999999999987665432       22221 1        02221 233222   


Q ss_pred             CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh---hcccCC-----------
Q psy2408         153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK---NIHSNF-----------  217 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------  217 (298)
                       -...|+|+.. +-+...-. .+++++.+.++|+..+ ++..+-.   + ..........   ....++           
T Consensus        80 -~~~aDlVi~a-v~e~~~~k~~~~~~l~~~~~~~~il-~s~ts~~---~-~~~la~~~~~~~r~ig~h~~~P~~~~~~ve  152 (282)
T PRK05808         80 -LKDADLVIEA-ATENMDLKKKIFAQLDEIAKPEAIL-ATNTSSL---S-ITELAAATKRPDKVIGMHFFNPVPVMKLVE  152 (282)
T ss_pred             -hccCCeeeec-ccccHHHHHHHHHHHHhhCCCCcEE-EECCCCC---C-HHHHHHhhCCCcceEEeeccCCcccCccEE
Confidence             1457887643 12222223 8888999999988765 4333311   1 1112111110   000011           


Q ss_pred             ---------CCcchHHHHHHhCCCcEEEEEeCCCCccc
Q psy2408         218 ---------ILVEHYPDLLNKSGFELIKIDDITSHVMP  246 (298)
Q Consensus       218 ---------~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~  246 (298)
                               -..+....+++..|..++.+.+.+..+..
T Consensus       153 v~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g~i~~  190 (282)
T PRK05808        153 IIRGLATSDATHEAVEALAKKIGKTPVEVKNAPGFVVN  190 (282)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccChHHH
Confidence                     11245567889999998888666555544

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.74  E-value=4.4  Score=39.25  Aligned_cols=97  Identities=14%  Similarity=0.007  Sum_probs=61.4

Q ss_pred             CCeEEEeCCCC-CH-HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc-------C-CC--------CceEEEECCCCCC
Q psy2408          89 GQRFIDIGCGF-GL-SGIRLAKAKGCRVDGITISKFQQESAMKTAKAE-------G-LL--------DKVNFLHGDALNL  150 (298)
Q Consensus        89 ~~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~  150 (298)
                      -.+|.-||+|+ |. ++..++...|..|+.+|.+++.++.+..++...       + +.        .++++. .|...+
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~  387 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRGF  387 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHHh
Confidence            36899999998 33 333344246899999999999998887654421       1 10        133332 222211


Q ss_pred             CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEE
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~  191 (298)
                          ...|+|+= .+.+.+.-. ++++++.++++|+..|.-.
T Consensus       388 ----~~aDlViE-av~E~~~~K~~v~~~le~~~~~~~ilasn  424 (708)
T PRK11154        388 ----KHADVVIE-AVFEDLALKQQMVAEVEQNCAPHTIFASN  424 (708)
T ss_pred             ----ccCCEEee-cccccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence                45777753 244444445 9999999999999776543

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=90.72  E-value=4.9  Score=35.35  Aligned_cols=97  Identities=19%  Similarity=0.205  Sum_probs=60.1

Q ss_pred             CCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCCCC
Q psy2408          84 TSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFDND  155 (298)
Q Consensus        84 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~  155 (298)
                      ..+.++.+||-.|+|. |..+..+++..|.. +++++.+++..+.+++.    +..   .++..+-..+      ..+..
T Consensus       183 ~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~----g~~---~v~~~~~~~~~~~l~~~~~~~  255 (367)
T cd08263         183 ADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL----GAT---HTVNAAKEDAVAAIREITGGR  255 (367)
T ss_pred             ccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCc---eEecCCcccHHHHHHHHhCCC
Confidence            3446788888877653 66666667767877 99999988877766432    321   2222211111      11235


Q ss_pred             CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .+|+|+..     +.....+..+.+.|+++|+++...
T Consensus       256 ~~d~vld~-----vg~~~~~~~~~~~l~~~G~~v~~g  287 (367)
T cd08263         256 GVDVVVEA-----LGKPETFKLALDVVRDGGRAVVVG  287 (367)
T ss_pred             CCCEEEEe-----CCCHHHHHHHHHHHhcCCEEEEEc
Confidence            68988743     222236777889999999988764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=90.70  E-value=2.9  Score=36.33  Aligned_cols=121  Identities=12%  Similarity=0.055  Sum_probs=74.0

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---CCCCCeeEEEecc
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---FDNDSFDGGWFFE  164 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~~~  164 (298)
                      ..+++|+-||.|.+..-+.. .|. -+.++|+++..++.-+.++..      ..+...|+..+.   ++...+|+++...
T Consensus         3 ~~~~idLFsG~GG~~lGf~~-agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp   75 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEE-AGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP   75 (328)
T ss_pred             CceEEeeccCCchHHHHHHh-cCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence            35899999999999977777 454 688999999888887777542      345666766542   1111789998754


Q ss_pred             ccccc---------ChH--HHH---HHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhC
Q psy2408         165 SIFHM---------NHS--AAL---NEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKS  230 (298)
Q Consensus       165 ~l~~~---------~~~--~~l---~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  230 (298)
                      -.+.+         .|+  .++   .++...++|  .+++.+-+.       .....        .-...+.+...|++.
T Consensus        76 PCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~-------gl~~~--------~~~~~~~i~~~L~~~  138 (328)
T COG0270          76 PCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVK-------GLLSS--------KGQTFDEIKKELEEL  138 (328)
T ss_pred             CCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCc-------hHHhc--------CchHHHHHHHHHHHc
Confidence            44333         233  333   344445567  334433331       11111        222456777888888


Q ss_pred             CCc
Q psy2408         231 GFE  233 (298)
Q Consensus       231 Gf~  233 (298)
                      ||.
T Consensus       139 GY~  141 (328)
T COG0270         139 GYG  141 (328)
T ss_pred             CCc
Confidence            886

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.47  E-value=7.1  Score=31.68  Aligned_cols=102  Identities=22%  Similarity=0.207  Sum_probs=62.6

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  154 (298)
                      .+.+||-.|++ |.++..+++.   .|.+|++++.+++..+.........   .++.++.+|+.+..     +     .-
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL   79 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            35689988875 5555555554   4789999999987766554444332   25788889887631     0     01


Q ss_pred             CCeeEEEeccccccc-----------------ChH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         155 DSFDGGWFFESIFHM-----------------NHS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~-----------------~~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +.+|.++.+......                 ..+ .+++.+.+.++++|.+++...
T Consensus        80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss  136 (238)
T PRK05786         80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS  136 (238)
T ss_pred             CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence            356877765443211                 111 345666667777887776543

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=90.22  E-value=3.6  Score=39.88  Aligned_cols=146  Identities=15%  Similarity=0.132  Sum_probs=83.7

Q ss_pred             CCeEEEeCCCC-CHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------cC-CC--------CceEEEECCCCCC
Q psy2408          89 GQRFIDIGCGF-GLS-GIRLAKAKGCRVDGITISKFQQESAMKTAKA-------EG-LL--------DKVNFLHGDALNL  150 (298)
Q Consensus        89 ~~~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~-~~--------~~i~~~~~d~~~~  150 (298)
                      -.+|--||+|+ |.- +..++. .|..|+.+|.+++.++.++.++..       .+ +.        .++++. .|... 
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-  389 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSAS-KGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG-  389 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH-
Confidence            35789999997 333 333333 589999999999999887766541       11 00        123221 22211 


Q ss_pred             CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh---hcc------------
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK---NIH------------  214 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~---~~~------------  214 (298)
                       +  ...|+|+= .+.+.+.-. ++++++.++++|+..|.-.+....-     .........   ...            
T Consensus       390 -~--~~aDlViE-av~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i-----~~ia~~~~~p~r~ig~Hff~P~~~~~l  460 (714)
T TIGR02437       390 -F--DNVDIVVE-AVVENPKVKAAVLAEVEQHVREDAILASNTSTISI-----SLLAKALKRPENFCGMHFFNPVHRMPL  460 (714)
T ss_pred             -h--cCCCEEEE-cCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH-----HHHHhhcCCcccEEEEecCCCcccCce
Confidence             1  45777753 245555555 9999999999999766543332111     111111000   000            


Q ss_pred             ----cCCCC----cchHHHHHHhCCCcEEEEEeCCCCccc
Q psy2408         215 ----SNFIL----VEHYPDLLNKSGFELIKIDDITSHVMP  246 (298)
Q Consensus       215 ----~~~~~----~~~~~~~l~~~Gf~~~~~~~~~~~~~~  246 (298)
                          +...|    .+...+++++.|...+.+.+.+..+.+
T Consensus       461 vEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGfi~N  500 (714)
T TIGR02437       461 VEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPGFFVN  500 (714)
T ss_pred             EeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcccchHH
Confidence                01112    344567788899999988877666655

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.04  E-value=3.4  Score=40.06  Aligned_cols=146  Identities=16%  Similarity=0.122  Sum_probs=83.4

Q ss_pred             CeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------cC-C--------CCceEEEECCCCCCCC
Q psy2408          90 QRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA-------EG-L--------LDKVNFLHGDALNLPF  152 (298)
Q Consensus        90 ~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~-~--------~~~i~~~~~d~~~~~~  152 (298)
                      .+|.-||+|+ |.-...+....|..|+.+|.+++.++.+..++..       .+ +        ..++++. .|...+  
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~--  390 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF--  390 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh--
Confidence            5799999998 4333333333689999999999999887766432       11 1        0133322 233222  


Q ss_pred             CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh---hcc--------------
Q psy2408         153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK---NIH--------------  214 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~---~~~--------------  214 (298)
                        ...|+|+= .+.+.+.-. ++++++.++++|+..|.-.+...+-     .........   ...              
T Consensus       391 --~~aDlViE-av~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i-----~~la~~~~~p~r~~g~Hff~P~~~~~lVE  462 (715)
T PRK11730        391 --ERVDVVVE-AVVENPKVKAAVLAEVEQKVREDTILASNTSTISI-----SLLAKALKRPENFCGMHFFNPVHRMPLVE  462 (715)
T ss_pred             --cCCCEEEe-cccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH-----HHHHhhcCCCccEEEEecCCcccccceEE
Confidence              45677652 234444445 9999999999999766443332211     111111000   000              


Q ss_pred             --cCCC----CcchHHHHHHhCCCcEEEEEeCCCCccc
Q psy2408         215 --SNFI----LVEHYPDLLNKSGFELIKIDDITSHVMP  246 (298)
Q Consensus       215 --~~~~----~~~~~~~~l~~~Gf~~~~~~~~~~~~~~  246 (298)
                        ....    +.+...++++..|...+.+.+.+..+.+
T Consensus       463 vv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfv~n  500 (715)
T PRK11730        463 VIRGEKTSDETIATVVAYASKMGKTPIVVNDCPGFFVN  500 (715)
T ss_pred             eeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCchhHH
Confidence              1111    2345567788999999988877766655

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=89.88  E-value=4.1  Score=35.33  Aligned_cols=100  Identities=25%  Similarity=0.270  Sum_probs=61.2

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-CCCCCCeeE
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-PFDNDSFDG  159 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~  159 (298)
                      ..+.+.++.+||=.|||. |..+..+++..|.++++++.+++..+.++..    +..   .++...-... ....+.+|+
T Consensus       163 ~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~d~  235 (337)
T cd05283         163 KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKL----GAD---EFIATKDPEAMKKAAGSLDL  235 (337)
T ss_pred             HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHc----CCc---EEecCcchhhhhhccCCceE
Confidence            345567888888888764 6666666776788999999998877776432    221   1111110110 011356888


Q ss_pred             EEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         160 GWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       160 V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      |+...     .....+..+.+.|+++|+++....
T Consensus       236 v~~~~-----g~~~~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         236 IIDTV-----SASHDLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             EEECC-----CCcchHHHHHHHhcCCCEEEEEec
Confidence            87422     222346677889999999887643

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PRK10083 putative oxidoreductase; Provisional

Probab=89.86  E-value=2.1  Score=37.05  Aligned_cols=105  Identities=16%  Similarity=0.017  Sum_probs=61.7

Q ss_pred             HHHhCCCCCCCeEEEeCCCC-CHHHHHHHHh-cCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-CCCCCC
Q psy2408          80 MINKTSITKGQRFIDIGCGF-GLSGIRLAKA-KGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-LPFDND  155 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~  155 (298)
                      +....++.++.+||=.|+|. |..+..+++. .|+ .++++|.+++..+.+++.    |...-+.....+... +.-...
T Consensus       152 ~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~g~  227 (339)
T PRK10083        152 VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----GADWVINNAQEPLGEALEEKGI  227 (339)
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHhcCCC
Confidence            34455678899999999764 5666666664 477 488899988887777653    321111111111111 110111


Q ss_pred             CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .+|+|+-.     ......+....+.|+++|+++....
T Consensus       228 ~~d~vid~-----~g~~~~~~~~~~~l~~~G~~v~~g~  260 (339)
T PRK10083        228 KPTLIIDA-----ACHPSILEEAVTLASPAARIVLMGF  260 (339)
T ss_pred             CCCEEEEC-----CCCHHHHHHHHHHhhcCCEEEEEcc
Confidence            24565432     2223567788899999999887644

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=89.76  E-value=4.7  Score=35.81  Aligned_cols=99  Identities=19%  Similarity=0.153  Sum_probs=61.7

Q ss_pred             CCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC---CC----CCCCCCC
Q psy2408          84 TSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHG---DA----LNLPFDN  154 (298)
Q Consensus        84 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~---d~----~~~~~~~  154 (298)
                      ..+.++.+||=.|+|. |..+..+++..|+ .+++++.+++..+.+++.    +...-+.....   +.    ..+ .+.
T Consensus       199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~~~~v~~~-~~g  273 (384)
T cd08265         199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEM----GADYVFNPTKMRDCLSGEKVMEV-TKG  273 (384)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCCEEEcccccccccHHHHHHHh-cCC
Confidence            4667888999888765 6666667776788 799999988765555442    33211111110   10    111 123


Q ss_pred             CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         155 DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ..+|+|+..     ...+ ..+..+.+.|+++|+++...
T Consensus       274 ~gvDvvld~-----~g~~~~~~~~~~~~l~~~G~~v~~g  307 (384)
T cd08265         274 WGADIQVEA-----AGAPPATIPQMEKSIAINGKIVYIG  307 (384)
T ss_pred             CCCCEEEEC-----CCCcHHHHHHHHHHHHcCCEEEEEC
Confidence            468988643     2233 56778889999999988754

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=89.51  E-value=1.2  Score=38.67  Aligned_cols=99  Identities=14%  Similarity=0.189  Sum_probs=61.3

Q ss_pred             hCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC----C--CCCC
Q psy2408          83 KTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN----L--PFDN  154 (298)
Q Consensus        83 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~----~--~~~~  154 (298)
                      ...+.++.+||=.|||. |..+..+++..|.. +++++.++...+.+++    .+..   .++...-..    +  ..+.
T Consensus       163 ~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~---~v~~~~~~~~~~~i~~~~~~  235 (345)
T cd08287         163 SAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGAT---DIVAERGEEAVARVRELTGG  235 (345)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc---eEecCCcccHHHHHHHhcCC
Confidence            44567788888888774 66677777777874 8999988765555543    2321   112111111    0  0123


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ..+|+++..     ......+..+.+.++++|++++...
T Consensus       236 ~~~d~il~~-----~g~~~~~~~~~~~l~~~g~~v~~g~  269 (345)
T cd08287         236 VGADAVLEC-----VGTQESMEQAIAIARPGGRVGYVGV  269 (345)
T ss_pred             CCCCEEEEC-----CCCHHHHHHHHHhhccCCEEEEecc
Confidence            458888642     2234678888999999999887643

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=89.41  E-value=1.8  Score=31.57  Aligned_cols=99  Identities=18%  Similarity=0.272  Sum_probs=48.4

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCC-HHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC-
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFG-LSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD-  153 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G-~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-  153 (298)
                      +.+.+.+..   +..+|+|+|-|.= ..+..|.+ .|..|+++|+.+.       .+.     ..+.++..|+.+..++ 
T Consensus         4 ~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~-~G~dV~~tDi~~~-------~a~-----~g~~~v~DDif~P~l~i   67 (127)
T PF03686_consen    4 FAEYIARLN---NYGKIVEVGIGFNPEVAKKLKE-RGFDVIATDINPR-------KAP-----EGVNFVVDDIFNPNLEI   67 (127)
T ss_dssp             HHHHHHHHS----SSEEEEET-TT--HHHHHHHH-HS-EEEEE-SS-S----------------STTEE---SSS--HHH
T ss_pred             HHHHHHHhC---CCCcEEEECcCCCHHHHHHHHH-cCCcEEEEECccc-------ccc-----cCcceeeecccCCCHHH
Confidence            344555443   3349999999985 44555555 6899999999886       111     2367899999884321 


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      =...|+|++...-.-+.  ..+.++.+-  -|.-++|....
T Consensus        68 Y~~a~lIYSiRPP~El~--~~il~lA~~--v~adlii~pL~  104 (127)
T PF03686_consen   68 YEGADLIYSIRPPPELQ--PPILELAKK--VGADLIIRPLG  104 (127)
T ss_dssp             HTTEEEEEEES--TTSH--HHHHHHHHH--HT-EEEEE-BT
T ss_pred             hcCCcEEEEeCCChHHh--HHHHHHHHH--hCCCEEEECCC
Confidence            14678887644322111  333333332  24567776554

; PDB: 2K4M_A.

>KOG2912|consensus

Probab=89.17  E-value=1.3  Score=37.68  Aligned_cols=92  Identities=12%  Similarity=0.019  Sum_probs=60.2

Q ss_pred             HHHHHHHHhCCCCCCCe--EEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQR--FIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~--vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      .+...++..-....+..  =+|||.|+..+-..+... .+....+.|++...+..|+.+....++.+.+.+++....+.-
T Consensus        87 hwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktl  166 (419)
T KOG2912|consen   87 HWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTL  166 (419)
T ss_pred             HHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhc
Confidence            33444444433233322  378888876554444333 477899999999999999999999999888888777543321


Q ss_pred             -------CCCCCeeEEEecccc
Q psy2408         152 -------FDNDSFDGGWFFESI  166 (298)
Q Consensus       152 -------~~~~~fD~V~~~~~l  166 (298)
                             -++..||.++|+-.+
T Consensus       167 l~d~~~~~~e~~ydFcMcNPPF  188 (419)
T KOG2912|consen  167 LMDALKEESEIIYDFCMCNPPF  188 (419)
T ss_pred             chhhhccCccceeeEEecCCch
Confidence                   123458888776544

>cd05281 TDH Threonine dehydrogenase

Probab=89.15  E-value=1.3  Score=38.42  Aligned_cols=97  Identities=24%  Similarity=0.287  Sum_probs=58.3

Q ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC---CCCCCCCCCeeEE
Q psy2408          86 ITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA---LNLPFDNDSFDGG  160 (298)
Q Consensus        86 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~fD~V  160 (298)
                      ..++.+||-.|+|. |..+..+++..|. .+++++-+++....+++.    +...-+.....+.   ..+ .+.+.+|+|
T Consensus       161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~-~~~~~vd~v  235 (341)
T cd05281         161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM----GADVVINPREEDVVEVKSV-TDGTGVDVV  235 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CcceeeCcccccHHHHHHH-cCCCCCCEE
Confidence            35778888888764 6666777777787 688888777666655532    3211011111111   111 123568888


Q ss_pred             EecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         161 WFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       161 ~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +.+-     .....+..+.+.|+++|+++...
T Consensus       236 ld~~-----g~~~~~~~~~~~l~~~G~~v~~g  262 (341)
T cd05281         236 LEMS-----GNPKAIEQGLKALTPGGRVSILG  262 (341)
T ss_pred             EECC-----CCHHHHHHHHHHhccCCEEEEEc
Confidence            7432     12246677889999999987654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=89.09  E-value=1.4  Score=37.05  Aligned_cols=49  Identities=18%  Similarity=0.192  Sum_probs=40.0

Q ss_pred             CCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh
Q psy2408          84 TSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA  133 (298)
Q Consensus        84 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~  133 (298)
                      +.+..+.+|.-+|+|.-.+..++++ .++++.+||+++..+...+-++..
T Consensus        59 m~~g~ghrivtigSGGcn~L~ylsr-~Pa~id~VDlN~ahiAln~lklaA  107 (414)
T COG5379          59 MQLGIGHRIVTIGSGGCNMLAYLSR-APARIDVVDLNPAHIALNRLKLAA  107 (414)
T ss_pred             HhcCCCcEEEEecCCcchHHHHhhc-CCceeEEEeCCHHHHHHHHHHHHH
Confidence            3446788999999998778878877 578999999999998887766553

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=89.01  E-value=4.9  Score=35.64  Aligned_cols=69  Identities=22%  Similarity=0.080  Sum_probs=46.4

Q ss_pred             CeEEEeCCCC-CHHHHHH-HHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-C--CCCCeeEEEec
Q psy2408          90 QRFIDIGCGF-GLSGIRL-AKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-F--DNDSFDGGWFF  163 (298)
Q Consensus        90 ~~vLDiGcG~-G~~~~~l-~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~--~~~~fD~V~~~  163 (298)
                      .+||=||||. |...... ++....+|+..|-|.+.++.+.....     .+++..+.|+.+.+ .  --..+|+|+..
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn~   75 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVINA   75 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEEe
Confidence            4799999975 5554443 33223799999999988877765532     25888888887752 0  01446888753

>PRK08324 short chain dehydrogenase; Validated

Probab=88.96  E-value=4.4  Score=39.12  Aligned_cols=101  Identities=20%  Similarity=0.129  Sum_probs=63.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  154 (298)
                      ++.+||-.|+ +|.++..+++.   .|++|+++|.++..++.+...+...   .++.++..|+.+..     +     ..
T Consensus       421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~  496 (681)
T PRK08324        421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF  496 (681)
T ss_pred             CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4578888875 44555555543   4789999999987776665544322   35788888887631     1     02


Q ss_pred             CCeeEEEecccccccCh-------------------H-HHHHHHhhcccC---CcEEEEEe
Q psy2408         155 DSFDGGWFFESIFHMNH-------------------S-AALNEARRVLKS---GSILTLTD  192 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~-------------------~-~~l~~~~r~Lkp---gG~l~i~~  192 (298)
                      +.+|+|+.+........                   . .+++.+.+.+++   +|.+++..
T Consensus       497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs  557 (681)
T PRK08324        497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA  557 (681)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            46899987665332110                   2 456666777765   57776654

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=88.85  E-value=2.5  Score=36.77  Aligned_cols=100  Identities=18%  Similarity=0.215  Sum_probs=63.3

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC-CCC-----CCCC
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA-LNL-----PFDN  154 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~-~~~-----~~~~  154 (298)
                      ....+.++.+||=.|+|. |..+..+++..|.++++++.+++..+.+++    .+..   .++...- .++     ....
T Consensus       159 ~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~~~~~~~~  231 (345)
T cd08260         159 HQARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE----LGAV---ATVNASEVEDVAAAVRDLTG  231 (345)
T ss_pred             HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH----hCCC---EEEccccchhHHHHHHHHhC
Confidence            345567888999999764 666667777778999999999887777743    2331   2221111 111     0111


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +.+|+|+..     +.....+....+.|+++|.++....
T Consensus       232 ~~~d~vi~~-----~g~~~~~~~~~~~l~~~g~~i~~g~  265 (345)
T cd08260         232 GGAHVSVDA-----LGIPETCRNSVASLRKRGRHVQVGL  265 (345)
T ss_pred             CCCCEEEEc-----CCCHHHHHHHHHHhhcCCEEEEeCC
Confidence            268888653     2223466778899999999876543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=88.45  E-value=6.9  Score=33.94  Aligned_cols=97  Identities=19%  Similarity=0.237  Sum_probs=59.4

Q ss_pred             HhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC---C-CCCCC
Q psy2408          82 NKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN---L-PFDND  155 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~---~-~~~~~  155 (298)
                      ....+.++.+||=.|+ | .|..+..+++..|+++++++.+. ..+.++    ..+..   .+...+-..   . .....
T Consensus       171 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~----~~g~~---~~~~~~~~~~~~~~~~~~~  242 (350)
T cd08274         171 ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVR----ALGAD---TVILRDAPLLADAKALGGE  242 (350)
T ss_pred             hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHH----hcCCe---EEEeCCCccHHHHHhhCCC
Confidence            4556778999999997 3 36777777887889998888654 444443    23331   122111100   0 01235


Q ss_pred             CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .+|+|+....     . ..+..+.+.|+++|.++...
T Consensus       243 ~~d~vi~~~g-----~-~~~~~~~~~l~~~G~~v~~g  273 (350)
T cd08274         243 PVDVVADVVG-----G-PLFPDLLRLLRPGGRYVTAG  273 (350)
T ss_pred             CCcEEEecCC-----H-HHHHHHHHHhccCCEEEEec
Confidence            6898874322     1 35677889999999987643

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=88.32  E-value=6  Score=34.31  Aligned_cols=96  Identities=23%  Similarity=0.244  Sum_probs=58.5

Q ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCCCCCe
Q psy2408          86 ITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFDNDSF  157 (298)
Q Consensus        86 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~f  157 (298)
                      ..++.+||-.|+|. |..+..+++..|.+ |++++-++...+.+++.    +..   .++...-..+      ..+...+
T Consensus       159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~v~~~~~~~~~~l~~~~~~~~~  231 (340)
T TIGR00692       159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GAT---YVVNPFKEDVVKEVADLTDGEGV  231 (340)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc---EEEcccccCHHHHHHHhcCCCCC
Confidence            35778888877653 56666677767886 88888887766666543    321   1221111110      1123568


Q ss_pred             eEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         158 DGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       158 D~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      |+|+-+.     .....+..+.+.|+++|+++....
T Consensus       232 d~vld~~-----g~~~~~~~~~~~l~~~g~~v~~g~  262 (340)
T TIGR00692       232 DVFLEMS-----GAPKALEQGLQAVTPGGRVSLLGL  262 (340)
T ss_pred             CEEEECC-----CCHHHHHHHHHhhcCCCEEEEEcc
Confidence            9887541     122567788899999999876543

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=88.25  E-value=1.2  Score=38.58  Aligned_cols=95  Identities=19%  Similarity=0.220  Sum_probs=59.0

Q ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC------CCCCCCCCCe
Q psy2408          86 ITKGQRFIDIGCGF-GLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA------LNLPFDNDSF  157 (298)
Q Consensus        86 ~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~------~~~~~~~~~f  157 (298)
                      +.++.+||=.|+|. |..+..+++..+ .++++++.+++..+.+++    .+..   .++..+-      ..+ .+...+
T Consensus       165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~i~~~-~~~~~~  236 (340)
T cd05284         165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGAD---HVLNASDDVVEEVREL-TGGRGA  236 (340)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCc---EEEcCCccHHHHHHHH-hCCCCC
Confidence            46788999999664 555555666667 799999988877666543    2321   1221111      111 123468


Q ss_pred             eEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         158 DGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       158 D~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      |+|+..     ......+..+.+.|+++|+++....
T Consensus       237 dvvld~-----~g~~~~~~~~~~~l~~~g~~i~~g~  267 (340)
T cd05284         237 DAVIDF-----VGSDETLALAAKLLAKGGRYVIVGY  267 (340)
T ss_pred             CEEEEc-----CCCHHHHHHHHHHhhcCCEEEEEcC
Confidence            988743     2223567788899999999887543

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=88.15  E-value=0.8  Score=39.51  Aligned_cols=64  Identities=19%  Similarity=0.121  Sum_probs=49.0

Q ss_pred             eEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---CCCCCeeEEEecc
Q psy2408          91 RFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---FDNDSFDGGWFFE  164 (298)
Q Consensus        91 ~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~~~  164 (298)
                      +++|+-||.|.++.-+.+ .| ..+.++|+++...+.-+.++.        .....|+.++.   ++. .+|+++...
T Consensus         2 ~~~dlFsG~Gg~~~g~~~-ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQ-AGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHH-TTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHh-cCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEecc
Confidence            799999999999998888 44 378999999998888887763        67888888873   443 599998643

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=88.06  E-value=2.1  Score=35.47  Aligned_cols=88  Identities=18%  Similarity=0.171  Sum_probs=59.8

Q ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecc
Q psy2408          85 SITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE  164 (298)
Q Consensus        85 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~  164 (298)
                      .+.+++...|+|...|.++..|.+ .+..|++||--+ |.+...    ..   +.++-...|..++.......|-.+|..
T Consensus       208 rL~~~M~avDLGAcPGGWTyqLVk-r~m~V~aVDng~-ma~sL~----dt---g~v~h~r~DGfk~~P~r~~idWmVCDm  278 (358)
T COG2933         208 RLAPGMWAVDLGACPGGWTYQLVK-RNMRVYAVDNGP-MAQSLM----DT---GQVTHLREDGFKFRPTRSNIDWMVCDM  278 (358)
T ss_pred             hhcCCceeeecccCCCccchhhhh-cceEEEEeccch-hhhhhh----cc---cceeeeeccCcccccCCCCCceEEeeh
Confidence            457899999999999999999998 578999999754 222221    12   357778888887743356788776643


Q ss_pred             cccccChH-HHHHHHhhcccCC
Q psy2408         165 SIFHMNHS-AALNEARRVLKSG  185 (298)
Q Consensus       165 ~l~~~~~~-~~l~~~~r~Lkpg  185 (298)
                      +    ..| ..-..+...|..|
T Consensus       279 V----EkP~rv~~li~~Wl~nG  296 (358)
T COG2933         279 V----EKPARVAALIAKWLVNG  296 (358)
T ss_pred             h----cCcHHHHHHHHHHHHcc
Confidence            3    344 4444555555544

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=87.98  E-value=5.3  Score=38.88  Aligned_cols=145  Identities=11%  Similarity=0.037  Sum_probs=83.1

Q ss_pred             CeEEEeCCCC-CHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc-------C-CC--------CceEEEECCCCCCC
Q psy2408          90 QRFIDIGCGF-GLS-GIRLAKAKGCRVDGITISKFQQESAMKTAKAE-------G-LL--------DKVNFLHGDALNLP  151 (298)
Q Consensus        90 ~~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~  151 (298)
                      .+|--||+|+ |.- +..++. .|..|+.+|.+++.++.+..++...       + +.        .++++. .|...+ 
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~-~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~-  412 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVD-KGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSGF-  412 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHh-CCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh-
Confidence            5789999997 333 333333 5899999999999999887765421       1 11        123222 233221 


Q ss_pred             CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh---hcc-------------
Q psy2408         152 FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK---NIH-------------  214 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~---~~~-------------  214 (298)
                         ...|+|+= .+.+.+.-. ++++++.++++|+..|.-.+....-     .........   ...             
T Consensus       413 ---~~aDlViE-Av~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i-----~~la~~~~~p~r~ig~Hff~P~~~m~Lv  483 (737)
T TIGR02441       413 ---KNADMVIE-AVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPI-----KDIAAVSSRPEKVIGMHYFSPVDKMQLL  483 (737)
T ss_pred             ---ccCCeehh-hccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH-----HHHHhhcCCccceEEEeccCCcccCceE
Confidence               35677642 244444445 9999999999999776544333211     111111000   000             


Q ss_pred             ---cCCCC----cchHHHHHHhCCCcEEEEEeCCCCccc
Q psy2408         215 ---SNFIL----VEHYPDLLNKSGFELIKIDDITSHVMP  246 (298)
Q Consensus       215 ---~~~~~----~~~~~~~l~~~Gf~~~~~~~~~~~~~~  246 (298)
                         ....|    .+....++++.|...+.+.+.+..+.+
T Consensus       484 Evv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~N  522 (737)
T TIGR02441       484 EIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTT  522 (737)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHH
Confidence               01112    334456778899998888777666655

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PLN02702 L-idonate 5-dehydrogenase

Probab=87.94  E-value=10  Score=33.20  Aligned_cols=103  Identities=17%  Similarity=0.208  Sum_probs=62.6

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEE--ECCCCC----C-CC
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFL--HGDALN----L-PF  152 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~--~~d~~~----~-~~  152 (298)
                      ....+.++.+||-+|+|. |..+..+++..|+ .++++|.++...+.++..    +.+..+.+.  ..+...    + ..
T Consensus       175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~  250 (364)
T PLN02702        175 RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL----GADEIVLVSTNIEDVESEVEEIQKA  250 (364)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEecCcccccHHHHHHHHhhh
Confidence            456677888999998763 6666777776776 488999988777766543    322111110  011100    1 01


Q ss_pred             CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ....+|+|+-.     ......+..+.+.|+++|+++....
T Consensus       251 ~~~~~d~vid~-----~g~~~~~~~~~~~l~~~G~~v~~g~  286 (364)
T PLN02702        251 MGGGIDVSFDC-----VGFNKTMSTALEATRAGGKVCLVGM  286 (364)
T ss_pred             cCCCCCEEEEC-----CCCHHHHHHHHHHHhcCCEEEEEcc
Confidence            12468887643     2223567888899999999876543

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=87.94  E-value=2.4  Score=36.00  Aligned_cols=98  Identities=21%  Similarity=0.245  Sum_probs=60.9

Q ss_pred             hCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCCC
Q psy2408          83 KTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFDN  154 (298)
Q Consensus        83 ~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~  154 (298)
                      ...+.++.+||-.|| | .|..+..+++..|+.+++++.++...+.++..    +..   .++..+-...      ..+.
T Consensus       134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~i~~~~~~  206 (323)
T cd08241         134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARAL----GAD---HVIDYRDPDLRERVKALTGG  206 (323)
T ss_pred             hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHc----CCc---eeeecCCccHHHHHHHHcCC
Confidence            445678899999998 2 46666677776789999999998777766432    321   1122111111      0123


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ..+|+++.+..     . ..+..+.+.++++|.++....
T Consensus       207 ~~~d~v~~~~g-----~-~~~~~~~~~~~~~g~~v~~~~  239 (323)
T cd08241         207 RGVDVVYDPVG-----G-DVFEASLRSLAWGGRLLVIGF  239 (323)
T ss_pred             CCcEEEEECcc-----H-HHHHHHHHhhccCCEEEEEcc
Confidence            46888865322     1 345567788899999876543

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=87.91  E-value=3.1  Score=35.38  Aligned_cols=59  Identities=27%  Similarity=0.247  Sum_probs=48.2

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE  134 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~  134 (298)
                      ..+...++.. ...++..|||.=+|+|..+..... .+..++|+|+++..++.+.+++...
T Consensus       209 ~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~-~~r~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         209 LALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKN-LGRRFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             HHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHH-cCCceEEEecCHHHHHHHHHHHHhh
Confidence            4455555555 446899999999999999876666 7889999999999999999998753

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=87.89  E-value=9.2  Score=33.10  Aligned_cols=98  Identities=20%  Similarity=0.245  Sum_probs=60.1

Q ss_pred             CCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCCCC
Q psy2408          84 TSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFDND  155 (298)
Q Consensus        84 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~  155 (298)
                      ..+.++.+||=.|+|. |..+..+++..|. ++++++.++.....+.+    .|.    ..+..+-.++      -.+..
T Consensus       163 ~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~----~~~~~~~~~~~~~l~~~~~~~  234 (344)
T cd08284         163 AQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGA----EPINFEDAEPVERVREATEGR  234 (344)
T ss_pred             cCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCC----eEEecCCcCHHHHHHHHhCCC
Confidence            4566788998888654 5556666776785 89999888766665543    232    1122211111      01235


Q ss_pred             CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .+|+|+-.     ......+....+.|+++|+++.....
T Consensus       235 ~~dvvid~-----~~~~~~~~~~~~~l~~~g~~v~~g~~  268 (344)
T cd08284         235 GADVVLEA-----VGGAAALDLAFDLVRPGGVISSVGVH  268 (344)
T ss_pred             CCCEEEEC-----CCCHHHHHHHHHhcccCCEEEEECcC
Confidence            68988643     22235677888999999998875433

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>KOG1201|consensus

Probab=87.83  E-value=4.9  Score=34.03  Aligned_cols=78  Identities=21%  Similarity=0.192  Sum_probs=56.8

Q ss_pred             CCCeEEEeCCCCCHH---HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CCC
Q psy2408          88 KGQRFIDIGCGFGLS---GIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FDN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~---~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  154 (298)
                      .|..||=-|+|.|.-   +..+++ .++++...|++++..+.-.+.+.+.|   ++.....|+.+..          -.-
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~-rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAK-RGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV  112 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHH-hCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            577999999888732   444444 57899999999988888877777654   5888899988741          123


Q ss_pred             CCeeEEEeccccccc
Q psy2408         155 DSFDGGWFFESIFHM  169 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~  169 (298)
                      +..|+++.+..+-+.
T Consensus       113 G~V~ILVNNAGI~~~  127 (300)
T KOG1201|consen  113 GDVDILVNNAGIVTG  127 (300)
T ss_pred             CCceEEEeccccccC
Confidence            678998887665443

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=87.80  E-value=1.5  Score=37.26  Aligned_cols=98  Identities=17%  Similarity=0.115  Sum_probs=62.3

Q ss_pred             hCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----C-CCC
Q psy2408          83 KTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----P-FDN  154 (298)
Q Consensus        83 ~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~  154 (298)
                      ...+.++.+||=.|+ | .|..+..+++..|..+++++.++...+.+++    .+..   .++..+-..+     . ...
T Consensus       131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~  203 (320)
T cd05286         131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREITGG  203 (320)
T ss_pred             hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHcCC
Confidence            445678889999994 3 4777777888789999999998887766643    2321   1222211111     0 123


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ..+|+|+.+..     . ..+..+.+.|+++|+++....
T Consensus       204 ~~~d~vl~~~~-----~-~~~~~~~~~l~~~g~~v~~g~  236 (320)
T cd05286         204 RGVDVVYDGVG-----K-DTFEGSLDSLRPRGTLVSFGN  236 (320)
T ss_pred             CCeeEEEECCC-----c-HhHHHHHHhhccCcEEEEEec
Confidence            46898875321     2 355667888999999886543

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=87.73  E-value=1.4  Score=38.26  Aligned_cols=99  Identities=26%  Similarity=0.284  Sum_probs=62.2

Q ss_pred             HhCCCCCCCeEEEeCCC-CCHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCC
Q psy2408          82 NKTSITKGQRFIDIGCG-FGLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFD  153 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~  153 (298)
                      ....+.++.+||=.|+| .|..+..+++..|.+ +++++.+++..+.+..    .+..   .++..+-..+      -.+
T Consensus       159 ~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~~  231 (343)
T cd08235         159 RKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK----LGAD---YTIDAAEEDLVEKVRELTD  231 (343)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---EEecCCccCHHHHHHHHhC
Confidence            34567788999999876 366666677767888 9899988887776643    2321   2222111110      012


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ...+|+|+...     .....+..+.+.|+++|+++...
T Consensus       232 ~~~vd~vld~~-----~~~~~~~~~~~~l~~~g~~v~~~  265 (343)
T cd08235         232 GRGADVVIVAT-----GSPEAQAQALELVRKGGRILFFG  265 (343)
T ss_pred             CcCCCEEEECC-----CChHHHHHHHHHhhcCCEEEEEe
Confidence            34589887432     12246677788999999988754

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=87.73  E-value=4.7  Score=34.63  Aligned_cols=95  Identities=18%  Similarity=0.160  Sum_probs=55.2

Q ss_pred             CeEEEeCCCC-CH-HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC----CceEEEECCCCCCCCCCCCeeEEEec
Q psy2408          90 QRFIDIGCGF-GL-SGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLL----DKVNFLHGDALNLPFDNDSFDGGWFF  163 (298)
Q Consensus        90 ~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~----~~i~~~~~d~~~~~~~~~~fD~V~~~  163 (298)
                      ++|+=+|+|. |. ++..|++ .|..|+.++-+.+.++..++.   .|+.    ............ +-+.+.||+|+..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~-~G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~viv~   77 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLAR-AGLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAET-ADAAEPIHRLLLA   77 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHh-CCCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCC-cccccccCEEEEE
Confidence            4799999996 54 4666665 688999999987666655532   1210    000111111111 1123579988754


Q ss_pred             ccccccChHHHHHHHhhcccCCcEEEEE
Q psy2408         164 ESIFHMNHSAALNEARRVLKSGSILTLT  191 (298)
Q Consensus       164 ~~l~~~~~~~~l~~~~r~LkpgG~l~i~  191 (298)
                      -=-++  ...+++.+...+.++..++..
T Consensus        78 vK~~~--~~~al~~l~~~l~~~t~vv~l  103 (305)
T PRK05708         78 CKAYD--AEPAVASLAHRLAPGAELLLL  103 (305)
T ss_pred             CCHHh--HHHHHHHHHhhCCCCCEEEEE
Confidence            32221  117888888999998876654

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=87.70  E-value=13  Score=31.27  Aligned_cols=94  Identities=19%  Similarity=0.211  Sum_probs=56.5

Q ss_pred             CCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCCCeeEE
Q psy2408          85 SITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDNDSFDGG  160 (298)
Q Consensus        85 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V  160 (298)
                      .+.++.+||=.|+ | .|..+..+++..|.++++++.++ ..+.++.    .+..   .++...-...  ......+|++
T Consensus       141 ~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~d~v  212 (309)
T cd05289         141 GLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRS----LGAD---EVIDYTKGDFERAAAPGGVDAV  212 (309)
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHH----cCCC---EEEeCCCCchhhccCCCCceEE
Confidence            3678889998886 3 46666777776788998888766 5544432    2321   1222111111  1223568887


Q ss_pred             EecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         161 WFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       161 ~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +.+     ... ..+..+.+.++++|.++...
T Consensus       213 ~~~-----~~~-~~~~~~~~~l~~~g~~v~~g  238 (309)
T cd05289         213 LDT-----VGG-ETLARSLALVKPGGRLVSIA  238 (309)
T ss_pred             EEC-----Cch-HHHHHHHHHHhcCcEEEEEc
Confidence            642     222 35667778899999988654

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=87.50  E-value=8  Score=33.25  Aligned_cols=93  Identities=18%  Similarity=0.093  Sum_probs=54.8

Q ss_pred             CCCeEEEe--CCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCCCCCee
Q psy2408          88 KGQRFIDI--GCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFDNDSFD  158 (298)
Q Consensus        88 ~~~~vLDi--GcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~fD  158 (298)
                      ++.++|=+  |+|. |..+..+++..|+++++++.++...+.+++.    +..   .++..+-.++      ..+...+|
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~----g~~---~~i~~~~~~~~~~v~~~~~~~~~d  214 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKI----GAE---YVLNSSDPDFLEDLKELIAKLNAT  214 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCc---EEEECCCccHHHHHHHHhCCCCCc
Confidence            34455544  5443 6667777777799999999999887777652    321   2232221111      01224688


Q ss_pred             EEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +|+-.-     ... .+....+.++++|+++....
T Consensus       215 ~vid~~-----g~~-~~~~~~~~l~~~G~~v~~g~  243 (324)
T cd08291         215 IFFDAV-----GGG-LTGQILLAMPYGSTLYVYGY  243 (324)
T ss_pred             EEEECC-----CcH-HHHHHHHhhCCCCEEEEEEe
Confidence            886422     222 23456778899999887643

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PRK08265 short chain dehydrogenase; Provisional

Probab=87.29  E-value=8  Score=32.09  Aligned_cols=73  Identities=21%  Similarity=0.204  Sum_probs=46.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  154 (298)
                      .+.++|-.|+ +|.++..+++.   .|++|+.+|.++..++......   +  .++.++.+|+.+..     +     ..
T Consensus         5 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (261)
T PRK08265          5 AGKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G--ERARFIATDITDDAAIERAVATVVARF   78 (261)
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence            3567887775 45566666554   4889999999876554443332   2  35788889987641     0     01


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +..|+++.+...
T Consensus        79 g~id~lv~~ag~   90 (261)
T PRK08265         79 GRVDILVNLACT   90 (261)
T ss_pred             CCCCEEEECCCC
Confidence            467988876543

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=87.19  E-value=11  Score=32.68  Aligned_cols=94  Identities=26%  Similarity=0.293  Sum_probs=59.3

Q ss_pred             CCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC----C-CCCCCCeeE
Q psy2408          87 TKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN----L-PFDNDSFDG  159 (298)
Q Consensus        87 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~----~-~~~~~~fD~  159 (298)
                      .++.+||-.|+|. |..+..+++..|. .|++++.++...+.+++.    +..   .++...-..    + ....+.+|+
T Consensus       174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~d~  246 (350)
T cd08240         174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA----GAD---VVVNGSDPDAAKRIIKAAGGGVDA  246 (350)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCc---EEecCCCccHHHHHHHHhCCCCcE
Confidence            4678999998764 6667777777787 789999988877776432    321   122211111    0 011126888


Q ss_pred             EEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         160 GWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       160 V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      |+..     ......+..+.+.|+++|+++...
T Consensus       247 vid~-----~g~~~~~~~~~~~l~~~g~~v~~g  274 (350)
T cd08240         247 VIDF-----VNNSATASLAFDILAKGGKLVLVG  274 (350)
T ss_pred             EEEC-----CCCHHHHHHHHHHhhcCCeEEEEC
Confidence            8642     222356788899999999988653

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=87.05  E-value=4  Score=36.09  Aligned_cols=105  Identities=20%  Similarity=0.251  Sum_probs=60.8

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC--CCC-C-CCCC
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD--ALN-L-PFDN  154 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d--~~~-~-~~~~  154 (298)
                      ....++.++.+||=.|+|. |..+..+++..|. +|+.+|.++...+.++..    |...-+.....+  ... + ....
T Consensus       183 ~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~~i~~~~~~~~~~~~v~~~~~  258 (373)
T cd08299         183 VNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKEL----GATECINPQDYKKPIQEVLTEMTD  258 (373)
T ss_pred             HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCceEecccccchhHHHHHHHHhC
Confidence            4456677889999998764 5566666776787 799999998887777442    321111111111  100 0 0112


Q ss_pred             CCeeEEEecccccccChHHHHHH-HhhcccCCcEEEEEeCC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNE-ARRVLKSGSILTLTDLP  194 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~-~~r~LkpgG~l~i~~~~  194 (298)
                      ..+|+|+-.     ...+..+.. +..+++++|+++.....
T Consensus       259 ~~~d~vld~-----~g~~~~~~~~~~~~~~~~G~~v~~g~~  294 (373)
T cd08299         259 GGVDFSFEV-----IGRLDTMKAALASCHEGYGVSVIVGVP  294 (373)
T ss_pred             CCCeEEEEC-----CCCcHHHHHHHHhhccCCCEEEEEccC
Confidence            458887643     222334444 44456788998877543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=86.92  E-value=3.5  Score=35.10  Aligned_cols=145  Identities=14%  Similarity=0.105  Sum_probs=75.9

Q ss_pred             CeEEEeCCCC-CHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc----------CC---------CCceEEEECCCC
Q psy2408          90 QRFIDIGCGF-GLS-GIRLAKAKGCRVDGITISKFQQESAMKTAKAE----------GL---------LDKVNFLHGDAL  148 (298)
Q Consensus        90 ~~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~----------~~---------~~~i~~~~~d~~  148 (298)
                      .+|.=||+|. |.. +..++. .|.+|+.+|.+++.++.+++.+...          +.         ..++.+ ..|..
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~   81 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFAR-TGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSYE   81 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCHH
Confidence            4688889886 433 333333 5789999999999998776644321          11         011111 11221


Q ss_pred             CCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh---hccc---------
Q psy2408         149 NLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK---NIHS---------  215 (298)
Q Consensus       149 ~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~---~~~~---------  215 (298)
                      .    -...|+|+..- .+..... .+++++.+.++|+..+ ++....   .. ..........   ....         
T Consensus        82 ~----~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il-~S~tsg---~~-~~~la~~~~~~~r~ig~hf~~P~~~~  151 (291)
T PRK06035         82 S----LSDADFIVEAV-PEKLDLKRKVFAELERNVSPETII-ASNTSG---IM-IAEIATALERKDRFIGMHWFNPAPVM  151 (291)
T ss_pred             H----hCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEE-EEcCCC---CC-HHHHHhhcCCcccEEEEecCCCcccC
Confidence            1    13468776532 2222223 7788888888877654 433221   11 1111111110   0000         


Q ss_pred             -------CCCC----cchHHHHHHhCCCcEEEEEeCCCCccc
Q psy2408         216 -------NFIL----VEHYPDLLNKSGFELIKIDDITSHVMP  246 (298)
Q Consensus       216 -------~~~~----~~~~~~~l~~~Gf~~~~~~~~~~~~~~  246 (298)
                             ...+    .+....+++..|..++.+.+.+..+..
T Consensus       152 ~~vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~n  193 (291)
T PRK06035        152 KLIEVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFFTT  193 (291)
T ss_pred             ccEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHH
Confidence                   0111    234556788899999988776666554

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=86.82  E-value=3.5  Score=31.02  Aligned_cols=49  Identities=12%  Similarity=0.080  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCC
Q psy2408          71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITIS  120 (298)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s  120 (298)
                      .+|+....+.......-+| -|||+|-|.|..=..|-+.+ +.+++++|-.
T Consensus        12 taQR~~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~   61 (160)
T PF12692_consen   12 TAQRDCLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRA   61 (160)
T ss_dssp             HHHHHHHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred             HHHHHHHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence            4567777777777765454 89999999999999998874 7899999974

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=86.80  E-value=17  Score=30.85  Aligned_cols=99  Identities=23%  Similarity=0.209  Sum_probs=60.4

Q ss_pred             hCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCCC
Q psy2408          83 KTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFDN  154 (298)
Q Consensus        83 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~  154 (298)
                      ...+.++.+||=.|+|. |..+..+++..|.+ ++++..+++..+.++.    .+..   .++...-..+      ..+.
T Consensus       124 ~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~l~~~~~~  196 (312)
T cd08269         124 RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARE----LGAT---EVVTDDSEAIVERVRELTGG  196 (312)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---eEecCCCcCHHHHHHHHcCC
Confidence            55667888998887653 55556666667888 9999888876664432    2321   1222111111      0123


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ..+|+++.+.     .....+....+.|+++|.++....
T Consensus       197 ~~vd~vld~~-----g~~~~~~~~~~~l~~~g~~~~~g~  230 (312)
T cd08269         197 AGADVVIEAV-----GHQWPLDLAGELVAERGRLVIFGY  230 (312)
T ss_pred             CCCCEEEECC-----CCHHHHHHHHHHhccCCEEEEEcc
Confidence            4688887532     122466778899999999887643

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=86.80  E-value=2.2  Score=32.45  Aligned_cols=53  Identities=19%  Similarity=0.212  Sum_probs=30.6

Q ss_pred             EeCCCCC--HHHHHHHH-h--cCCeEEEEeCCHHHHHHHHHH--HHhcCCCCceEEEECC
Q psy2408          94 DIGCGFG--LSGIRLAK-A--KGCRVDGITISKFQQESAMKT--AKAEGLLDKVNFLHGD  146 (298)
Q Consensus        94 DiGcG~G--~~~~~l~~-~--~~~~v~~vD~s~~~l~~a~~~--~~~~~~~~~i~~~~~d  146 (298)
                      |||++.|  .....+.. .  .+.+|+++|+++...+..+.+  +........+++....
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~   60 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYA   60 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEee
Confidence            8999999  55554432 1  367999999999999998888  4433222235555443

; PDB: 2PY6_A.

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=86.74  E-value=11  Score=33.39  Aligned_cols=104  Identities=16%  Similarity=0.117  Sum_probs=63.8

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCCC
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFDN  154 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~  154 (298)
                      ....+.++.+||-.|+|. |..+..+++..|. +++++|.++...+.+++.    +.    ..+...-...     .+..
T Consensus       170 ~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~----g~----~~v~~~~~~~~~~i~~~~~  241 (375)
T cd08282         170 ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESI----GA----IPIDFSDGDPVEQILGLEP  241 (375)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CC----eEeccCcccHHHHHHHhhC
Confidence            455667888998888874 6667777776786 799999988777766543    21    1111110110     1112


Q ss_pred             CCeeEEEecccccc----cC-hH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         155 DSFDGGWFFESIFH----MN-HS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       155 ~~fD~V~~~~~l~~----~~-~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ..+|+|+-...-..    .. +. ..+..+.++|+++|.++....
T Consensus       242 ~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~  286 (375)
T cd08282         242 GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGV  286 (375)
T ss_pred             CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEec
Confidence            45888875422110    01 22 568888999999999876544

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>PRK12939 short chain dehydrogenase; Provisional

Probab=86.57  E-value=6.4  Score=32.20  Aligned_cols=76  Identities=21%  Similarity=0.187  Sum_probs=50.0

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC-----C
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD-----N  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~  154 (298)
                      ++.++|=.|+ +|.++..+++.   .|+++++++.+++.++.....+...+  .++.++..|+.+..     +.     -
T Consensus         6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (250)
T PRK12939          6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL   82 (250)
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3567886664 66676776654   37899999988876666555554333  35888999987641     00     1


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +.+|+|+.+...
T Consensus        83 ~~id~vi~~ag~   94 (250)
T PRK12939         83 GGLDGLVNNAGI   94 (250)
T ss_pred             CCCCEEEECCCC
Confidence            468988865543

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.57  E-value=3.8  Score=34.85  Aligned_cols=94  Identities=15%  Similarity=0.096  Sum_probs=55.1

Q ss_pred             CeEEEeCCCC-C-HHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------cCCC---------CceEEEECCCCCCC
Q psy2408          90 QRFIDIGCGF-G-LSGIRLAKAKGCRVDGITISKFQQESAMKTAKA-------EGLL---------DKVNFLHGDALNLP  151 (298)
Q Consensus        90 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~~~---------~~i~~~~~d~~~~~  151 (298)
                      .+|--||+|+ | .++..++. .|..|+.+|.+++.++.+++++..       .+.-         .+++ ...|...+ 
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~-   82 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCAR-AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF-   82 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh-
Confidence            3788889986 3 23333344 589999999999999987766432       1110         1121 22333221 


Q ss_pred             CCCCCeeEEEecccccccChH-HHHHHHhhcc-cCCcEEEE
Q psy2408         152 FDNDSFDGGWFFESIFHMNHS-AALNEARRVL-KSGSILTL  190 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~L-kpgG~l~i  190 (298)
                         ...|+|+-+ +.+...-. .++..+..++ +|+..+.-
T Consensus        83 ---~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~s  119 (286)
T PRK07819         83 ---ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLAS  119 (286)
T ss_pred             ---CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEE
Confidence               456777542 33333333 8888888888 66655443

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=86.36  E-value=5.1  Score=34.55  Aligned_cols=98  Identities=21%  Similarity=0.278  Sum_probs=61.9

Q ss_pred             hCCCCCCCeEEEeCCC--CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEE
Q psy2408          83 KTSITKGQRFIDIGCG--FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGG  160 (298)
Q Consensus        83 ~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V  160 (298)
                      .+.+.++.+||=.|++  .|..+..+++..|.++++++.+++..+.++.. ...-+..+ .+ ..++..+    +.+|++
T Consensus       157 ~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~v~~~----~~~d~~  229 (334)
T PRK13771        157 RAGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGS-KF-SEEVKKI----GGADIV  229 (334)
T ss_pred             hcCCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCch-hH-HHHHHhc----CCCcEE
Confidence            3466788899999983  37777888887899999999998888877554 22111111 00 0011111    247877


Q ss_pred             EecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         161 WFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       161 ~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +...     .. ..+..+.+.|+++|+++....
T Consensus       230 ld~~-----g~-~~~~~~~~~l~~~G~~v~~g~  256 (334)
T PRK13771        230 IETV-----GT-PTLEESLRSLNMGGKIIQIGN  256 (334)
T ss_pred             EEcC-----Ch-HHHHHHHHHHhcCCEEEEEec
Confidence            6432     12 345677888999999887644

>PRK07806 short chain dehydrogenase; Provisional

Probab=86.30  E-value=9.8  Score=31.11  Aligned_cols=102  Identities=17%  Similarity=0.098  Sum_probs=58.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCH-HHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC-----
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISK-FQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD-----  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~-~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----  153 (298)
                      .+.++|-.|+ +|.++..+++.   .|.+|++++.+. ...+.....+...+  .++.++.+|+.+..     +.     
T Consensus         5 ~~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (248)
T PRK07806          5 PGKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE   81 (248)
T ss_pred             CCcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            3568888885 44555556554   377898887654 23333333333322  35778888987641     00     


Q ss_pred             CCCeeEEEeccccccc-------------ChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         154 NDSFDGGWFFESIFHM-------------NHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~-------------~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      -+..|+|+.+......             ... .+++.+.+.++.+|++++..
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is  134 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT  134 (248)
T ss_pred             CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence            1357887765432110             012 66677777766667766543

>KOG1197|consensus

Probab=86.19  E-value=5  Score=33.28  Aligned_cols=103  Identities=14%  Similarity=0.135  Sum_probs=68.3

Q ss_pred             HHhCCCCCCCeEEEeC--CCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCC-CC
Q psy2408          81 INKTSITKGQRFIDIG--CGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFD-ND  155 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiG--cG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~-~~  155 (298)
                      .+..++++|.+||--.  .|.|.+...+++..++++++.--+.+-.+.+++.    |...-|.....|+.+-  .+. ..
T Consensus       139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiTngK  214 (336)
T KOG1197|consen  139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKITNGK  214 (336)
T ss_pred             HHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhccCCC
Confidence            4456788999887643  4567778888887788998888887777777655    4333355555555331  222 35


Q ss_pred             CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ..|+++-+-..      ..+..-..+|||+|.++-...
T Consensus       215 GVd~vyDsvG~------dt~~~sl~~Lk~~G~mVSfG~  246 (336)
T KOG1197|consen  215 GVDAVYDSVGK------DTFAKSLAALKPMGKMVSFGN  246 (336)
T ss_pred             Cceeeeccccc------hhhHHHHHHhccCceEEEecc
Confidence            68887632222      567778889999999776443

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=86.17  E-value=17  Score=30.77  Aligned_cols=96  Identities=25%  Similarity=0.314  Sum_probs=61.9

Q ss_pred             hCCCCCCCeEEEeCC--CCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC--CCC-C-CCCCCC
Q psy2408          83 KTSITKGQRFIDIGC--GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD--ALN-L-PFDNDS  156 (298)
Q Consensus        83 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d--~~~-~-~~~~~~  156 (298)
                      ...+.++.+||=.|+  +.|..+..+++..|+++++++.+++..+.+++    .+..   .++...  ... + .. ...
T Consensus       137 ~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~i~~~-~~~  208 (320)
T cd08243         137 SLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE----LGAD---EVVIDDGAIAEQLRAA-PGG  208 (320)
T ss_pred             hcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc---EEEecCccHHHHHHHh-CCC
Confidence            344678889999986  34777888888789999999999877666643    2331   111111  100 0 12 356


Q ss_pred             eeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         157 FDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +|+|+.+..     . ..+..+.+.|+++|+++...
T Consensus       209 ~d~vl~~~~-----~-~~~~~~~~~l~~~g~~v~~g  238 (320)
T cd08243         209 FDKVLELVG-----T-ATLKDSLRHLRPGGIVCMTG  238 (320)
T ss_pred             ceEEEECCC-----h-HHHHHHHHHhccCCEEEEEc
Confidence            888874321     2 45777889999999987654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.94  E-value=4.1  Score=34.62  Aligned_cols=94  Identities=17%  Similarity=0.140  Sum_probs=52.3

Q ss_pred             eEEEeCCCC-CH-HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------cC-CC--------CceEEEECCCCCCCC
Q psy2408          91 RFIDIGCGF-GL-SGIRLAKAKGCRVDGITISKFQQESAMKTAKA-------EG-LL--------DKVNFLHGDALNLPF  152 (298)
Q Consensus        91 ~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~-~~--------~~i~~~~~d~~~~~~  152 (298)
                      +|.=||+|. |. ++..+++ .|.+|+.+|.+++.++.+.+....       .+ +.        .++. ...+..+.  
T Consensus         3 ~V~VIG~G~mG~~iA~~la~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~~--   78 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAV-SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLDLKAA--   78 (288)
T ss_pred             EEEEECccHHHHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCcHHHh--
Confidence            577788875 32 2333333 578999999999999887764321       11 00        1122 12232221  


Q ss_pred             CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEE
Q psy2408         153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTL  190 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i  190 (298)
                       -...|+|+.+-. ....-. .++.++.+.++|+..+.+
T Consensus        79 -~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~  115 (288)
T PRK09260         79 -VADADLVIEAVP-EKLELKKAVFETADAHAPAECYIAT  115 (288)
T ss_pred             -hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence             145688865322 211112 677788888888765544

>PRK07109 short chain dehydrogenase; Provisional

Probab=85.89  E-value=14  Score=32.09  Aligned_cols=76  Identities=16%  Similarity=0.085  Sum_probs=50.9

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-C---------CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-F---------DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~  154 (298)
                      .+.+||=.|+ +|.++..+++.   .|++|+.++.++..++...+.+...+  .++.++.+|+.+.. .         .-
T Consensus         7 ~~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~   83 (334)
T PRK07109          7 GRQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL   83 (334)
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence            3557887775 45555555544   47899999999887777666665444  35788889987741 0         01


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +.+|+++.+...
T Consensus        84 g~iD~lInnAg~   95 (334)
T PRK07109         84 GPIDTWVNNAMV   95 (334)
T ss_pred             CCCCEEEECCCc
Confidence            468998876544

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=85.80  E-value=8.5  Score=37.28  Aligned_cols=146  Identities=13%  Similarity=0.057  Sum_probs=82.0

Q ss_pred             CeEEEeCCCC-CHHHHH-HHHhcCCeEEEEeCCHHHHHHHHHHHHh-------cC-C--------CCceEEEECCCCCCC
Q psy2408          90 QRFIDIGCGF-GLSGIR-LAKAKGCRVDGITISKFQQESAMKTAKA-------EG-L--------LDKVNFLHGDALNLP  151 (298)
Q Consensus        90 ~~vLDiGcG~-G~~~~~-l~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~-~--------~~~i~~~~~d~~~~~  151 (298)
                      .+|.-||+|+ |.-... ++...|..|+.+|++++.++.+..++..       .+ +        ..++++. .|...+ 
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~-  382 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDYRGF-  382 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CChHHh-
Confidence            4799999998 333222 3323588999999999998888766431       11 1        0133322 233221 


Q ss_pred             CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh--------hcc--------
Q psy2408         152 FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK--------NIH--------  214 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--------~~~--------  214 (298)
                         ...|+|+= .+.+.+.-. ++++++-.+++|+..|.-.+...    + ..........        +..        
T Consensus       383 ---~~adlViE-av~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l----~-i~~la~~~~~p~r~~g~HffnP~~~~~lV  453 (699)
T TIGR02440       383 ---KDVDIVIE-AVFEDLALKHQMVKDIEQECAAHTIFASNTSSL----P-IGQIAAAASRPENVIGLHYFSPVEKMPLV  453 (699)
T ss_pred             ---ccCCEEEE-eccccHHHHHHHHHHHHhhCCCCcEEEeCCCCC----C-HHHHHHhcCCcccEEEEecCCccccCceE
Confidence               45777753 234444444 99999999999997665433221    1 1111111100        000        


Q ss_pred             ---cCCCC----cchHHHHHHhCCCcEEEEEeCCCCccc
Q psy2408         215 ---SNFIL----VEHYPDLLNKSGFELIKIDDITSHVMP  246 (298)
Q Consensus       215 ---~~~~~----~~~~~~~l~~~Gf~~~~~~~~~~~~~~  246 (298)
                         ....|    .+...+++++.|...+.+.+.+..+.+
T Consensus       454 Evv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pGfi~n  492 (699)
T TIGR02440       454 EVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAGFYVN  492 (699)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccchHHH
Confidence               01112    344556788899999988776655544

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=85.80  E-value=3.9  Score=35.11  Aligned_cols=94  Identities=15%  Similarity=0.187  Sum_probs=58.5

Q ss_pred             CCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CC--CCC-CCCCCCeeEEE
Q psy2408          88 KGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DA--LNL-PFDNDSFDGGW  161 (298)
Q Consensus        88 ~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~--~~~-~~~~~~fD~V~  161 (298)
                      ++.+||=.|+ | .|..+..+++..|.++++++.+++..+.+++.    +..   .++.. +.  ..+ ......+|+|+
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~~~~~~~~d~vl  218 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKL----GAK---EVIPREELQEESIKPLEKQRWAGAV  218 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc----CCC---EEEcchhHHHHHHHhhccCCcCEEE
Confidence            4678999987 4 36677777777889999999998877766432    321   11111 10  001 11234588875


Q ss_pred             ecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         162 FFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       162 ~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      -.     ... ..+....+.|+++|+++.....
T Consensus       219 d~-----~g~-~~~~~~~~~l~~~G~~i~~g~~  245 (326)
T cd08289         219 DP-----VGG-KTLAYLLSTLQYGGSVAVSGLT  245 (326)
T ss_pred             EC-----CcH-HHHHHHHHHhhcCCEEEEEeec
Confidence            32     222 4567788899999998876543

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=85.60  E-value=2  Score=37.31  Aligned_cols=96  Identities=20%  Similarity=0.275  Sum_probs=59.5

Q ss_pred             CCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCCCCCee
Q psy2408          87 TKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFDNDSFD  158 (298)
Q Consensus        87 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~fD  158 (298)
                      .++.+||-.|+|. |..+..+++..|. ++++++.++...+.+++.    |..   .++...-..+      -.....+|
T Consensus       162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l----g~~---~~~~~~~~~~~~~~~~~~~~~~~d  234 (341)
T PRK05396        162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM----GAT---RAVNVAKEDLRDVMAELGMTEGFD  234 (341)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCc---EEecCccccHHHHHHHhcCCCCCC
Confidence            4678888888764 6666677776787 688888888777665543    321   1221111110      01235688


Q ss_pred             EEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +|+...     .....+..+.+.|+++|.++.....
T Consensus       235 ~v~d~~-----g~~~~~~~~~~~l~~~G~~v~~g~~  265 (341)
T PRK05396        235 VGLEMS-----GAPSAFRQMLDNMNHGGRIAMLGIP  265 (341)
T ss_pred             EEEECC-----CCHHHHHHHHHHHhcCCEEEEEecC
Confidence            886522     1235677788999999998887543

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=85.41  E-value=11  Score=32.38  Aligned_cols=96  Identities=16%  Similarity=0.084  Sum_probs=61.5

Q ss_pred             CCCCCCCeEEEeCC--CCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC---C-CCC-C--CCCC
Q psy2408          84 TSITKGQRFIDIGC--GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG---D-ALN-L--PFDN  154 (298)
Q Consensus        84 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~---d-~~~-~--~~~~  154 (298)
                      ..+.++.+||=.|+  +.|..+..+++..|.+++.++.+++..+.++.    .+..   .++..   + ... +  ..+.
T Consensus       136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~  208 (334)
T PTZ00354        136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK----LAAI---ILIRYPDEEGFAPKVKKLTGE  208 (334)
T ss_pred             cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHHHhCC
Confidence            45678889998884  35777888888788888888888887777743    2321   12211   1 100 0  1123


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ..+|+++.+..      ...+..+.+.|+++|.++...
T Consensus       209 ~~~d~~i~~~~------~~~~~~~~~~l~~~g~~i~~~  240 (334)
T PTZ00354        209 KGVNLVLDCVG------GSYLSETAEVLAVDGKWIVYG  240 (334)
T ss_pred             CCceEEEECCc------hHHHHHHHHHhccCCeEEEEe
Confidence            56888875321      246677888999999988754

>KOG2782|consensus

Probab=85.35  E-value=0.54  Score=37.64  Aligned_cols=92  Identities=11%  Similarity=0.092  Sum_probs=63.0

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC----
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL----  150 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~----  150 (298)
                      +....++.+.+-++.+.+|.--|.|..+..+.+. ...++++.|.+|-.-+.|+....+. .++++..+.+.+..+    
T Consensus        31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el-~~~~l~a~Lg~Fs~~~~l~  109 (303)
T KOG2782|consen   31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL-MHPTLKAVLGNFSYIKSLI  109 (303)
T ss_pred             ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh-cchhHHHHHhhhHHHHHHH
Confidence            4566677777788999999999999888888876 4678999999998888887665422 222233333333332    


Q ss_pred             ---CCCCCCeeEEEecccccc
Q psy2408         151 ---PFDNDSFDGGWFFESIFH  168 (298)
Q Consensus       151 ---~~~~~~fD~V~~~~~l~~  168 (298)
                         .+.+.++|-|++-.....
T Consensus       110 ~~~gl~~~~vDGiLmDlGcSS  130 (303)
T KOG2782|consen  110 ADTGLLDVGVDGILMDLGCSS  130 (303)
T ss_pred             HHhCCCcCCcceEEeecCccc
Confidence               244678888887544433

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=85.29  E-value=2.1  Score=36.75  Aligned_cols=98  Identities=15%  Similarity=0.093  Sum_probs=61.0

Q ss_pred             HhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCC
Q psy2408          82 NKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFD  153 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~  153 (298)
                      ....+.++.+||=.|+ | .|..+..+++..|++++.+.-+.+..+.++.    .+..   .++...-..+      ..+
T Consensus       133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~~  205 (324)
T cd08292         133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA----LGIG---PVVSTEQPGWQDKVREAAG  205 (324)
T ss_pred             HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh----cCCC---EEEcCCCchHHHHHHHHhC
Confidence            3456778899998876 3 4777777888789998888777766555543    2321   2222211111      012


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ...+|+|+.+     ... ..+.++.+.|+++|+++...
T Consensus       206 ~~~~d~v~d~-----~g~-~~~~~~~~~l~~~g~~v~~g  238 (324)
T cd08292         206 GAPISVALDS-----VGG-KLAGELLSLLGEGGTLVSFG  238 (324)
T ss_pred             CCCCcEEEEC-----CCC-hhHHHHHHhhcCCcEEEEEe
Confidence            2468988742     222 24567789999999988754

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>KOG1209|consensus

Probab=85.28  E-value=7.7  Score=31.31  Aligned_cols=70  Identities=19%  Similarity=0.124  Sum_probs=46.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc---CCeEEEEeCCHH-HHHHHHHHHHhcCCCCceEEEECCCCCC-----------CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK---GCRVDGITISKF-QQESAMKTAKAEGLLDKVNFLHGDALNL-----------PF  152 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~-~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----------~~  152 (298)
                      ....||-.||..|.++..+++.+   |+.|++.--+.+ |-+.+.+    .|    +.....|+.+.           .+
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~----~g----l~~~kLDV~~~~~V~~v~~evr~~   77 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ----FG----LKPYKLDVSKPEEVVTVSGEVRAN   77 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh----hC----CeeEEeccCChHHHHHHHHHHhhC
Confidence            45689999999999999998863   788888765543 3333221    22    44556666542           24


Q ss_pred             CCCCeeEEEeccc
Q psy2408         153 DNDSFDGGWFFES  165 (298)
Q Consensus       153 ~~~~fD~V~~~~~  165 (298)
                      ++++.|+.+.+..
T Consensus        78 ~~Gkld~L~NNAG   90 (289)
T KOG1209|consen   78 PDGKLDLLYNNAG   90 (289)
T ss_pred             CCCceEEEEcCCC
Confidence            6788888876433

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=85.15  E-value=9.2  Score=32.79  Aligned_cols=98  Identities=20%  Similarity=0.165  Sum_probs=60.9

Q ss_pred             hCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCCCC
Q psy2408          83 KTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFDND  155 (298)
Q Consensus        83 ~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~  155 (298)
                      ...+.++.+||=.|+ | .|..+..+++..|+++++++.++...+.+++.+   +..   .++..+-.++     .....
T Consensus       140 ~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~v~~~~~~  213 (329)
T cd05288         140 IGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEEL---GFD---AAINYKTPDLAEALKEAAPD  213 (329)
T ss_pred             ccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhc---CCc---eEEecCChhHHHHHHHhccC
Confidence            345567889998884 3 467777777777899999998887777665422   221   1222111010     01124


Q ss_pred             CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .+|+++.+.     .. ..+....+.++++|+++...
T Consensus       214 ~~d~vi~~~-----g~-~~~~~~~~~l~~~G~~v~~g  244 (329)
T cd05288         214 GIDVYFDNV-----GG-EILDAALTLLNKGGRIALCG  244 (329)
T ss_pred             CceEEEEcc-----hH-HHHHHHHHhcCCCceEEEEe
Confidence            688886432     11 46777888899999987653

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.99  E-value=5.2  Score=33.99  Aligned_cols=94  Identities=17%  Similarity=0.080  Sum_probs=52.8

Q ss_pred             CeEEEeCCCC-CHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--------CCC---------CceEEEECCCCCC
Q psy2408          90 QRFIDIGCGF-GLS-GIRLAKAKGCRVDGITISKFQQESAMKTAKAE--------GLL---------DKVNFLHGDALNL  150 (298)
Q Consensus        90 ~~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~--------~~~---------~~i~~~~~d~~~~  150 (298)
                      .+|.=||+|. |.. +..++. .|.+|+.+|.+++.++.+++.+...        .+.         .++. ...|..+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~a   81 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAEA   81 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHHH
Confidence            3678888886 322 333333 5789999999999988887653211        110         1222 22333221


Q ss_pred             CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEE
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILT  189 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~  189 (298)
                         -...|+|+..-. +...-. .+++++...++++..+.
T Consensus        82 ---~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii~  117 (287)
T PRK08293         82 ---VKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIFA  117 (287)
T ss_pred             ---hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEEE
Confidence               135687765321 222223 77888888887776543

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=84.73  E-value=3.3  Score=35.79  Aligned_cols=99  Identities=18%  Similarity=0.173  Sum_probs=62.1

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC-CC----C-CCC
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA-LN----L-PFD  153 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~-~~----~-~~~  153 (298)
                      ....+.++.+||=.|+|. |..+..+++. .|.++++++.+++..+.+++.    +..   .++.... ..    + ...
T Consensus       156 ~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~v~~~~  228 (338)
T PRK09422        156 KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV----GAD---LTINSKRVEDVAKIIQEKT  228 (338)
T ss_pred             HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHc----CCc---EEecccccccHHHHHHHhc
Confidence            455677899999999764 6667777776 488999999999888877432    321   1121110 11    0 011


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                       +.+|.++...     .....+..+.+.|+++|.++....
T Consensus       229 -~~~d~vi~~~-----~~~~~~~~~~~~l~~~G~~v~~g~  262 (338)
T PRK09422        229 -GGAHAAVVTA-----VAKAAFNQAVDAVRAGGRVVAVGL  262 (338)
T ss_pred             -CCCcEEEEeC-----CCHHHHHHHHHhccCCCEEEEEee
Confidence             2467443211     123567888999999999887643

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=84.48  E-value=3.5  Score=35.42  Aligned_cols=98  Identities=18%  Similarity=0.149  Sum_probs=59.9

Q ss_pred             HhCCCCCCCeEEEeCCCC--CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCC
Q psy2408          82 NKTSITKGQRFIDIGCGF--GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFD  153 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~  153 (298)
                      ....+.++.+||-.|++.  |..+..++...|.+++.++.++...+.++.    .+..   ..+...-...      ...
T Consensus       160 ~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~  232 (342)
T cd08266         160 TRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE----LGAD---YVIDYRKEDFVREVRELTG  232 (342)
T ss_pred             HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---eEEecCChHHHHHHHHHhC
Confidence            445567888999988763  566666666678899999998877666533    2221   1111110000      012


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ...+|+++....-      ..+..+.+.++++|.++...
T Consensus       233 ~~~~d~~i~~~g~------~~~~~~~~~l~~~G~~v~~~  265 (342)
T cd08266         233 KRGVDVVVEHVGA------ATWEKSLKSLARGGRLVTCG  265 (342)
T ss_pred             CCCCcEEEECCcH------HHHHHHHHHhhcCCEEEEEe
Confidence            3468888754321      34566778889999987754

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=84.27  E-value=10  Score=29.98  Aligned_cols=97  Identities=13%  Similarity=0.078  Sum_probs=59.6

Q ss_pred             HHHHHhCCCCCCCeEEEeCCC-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC
Q psy2408          78 RIMINKTSITKGQRFIDIGCG-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS  156 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  156 (298)
                      +.+........+..||-+|.= +|.....+... .++|+.+|+.+.|-..         +++++.|...    +.++.+.
T Consensus        34 ~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~---------lp~~v~Fr~~----~~~~~G~   99 (254)
T COG4017          34 QAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGF---------LPNNVKFRNL----LKFIRGE   99 (254)
T ss_pred             HHhhhhhcccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhc---------CCCCccHhhh----cCCCCCc
Confidence            333333444567899999987 57665555542 6899999999865332         3455666554    2345688


Q ss_pred             eeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         157 FDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +|+|+-.-.+--+.. .+|    +-+.|+ .+++.++.
T Consensus       100 ~DlivDlTGlGG~~P-e~L----~~fnp~-vfiVEdP~  131 (254)
T COG4017         100 VDLIVDLTGLGGIEP-EFL----AKFNPK-VFIVEDPK  131 (254)
T ss_pred             eeEEEeccccCCCCH-HHH----hccCCc-eEEEECCC
Confidence            999997666554433 333    334554 55555443

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=83.91  E-value=5.4  Score=34.36  Aligned_cols=39  Identities=26%  Similarity=0.313  Sum_probs=26.3

Q ss_pred             CCCCeEEEeCCCC-CHHHHHHHHhcC-CeEEEEeCCHHHHH
Q psy2408          87 TKGQRFIDIGCGF-GLSGIRLAKAKG-CRVDGITISKFQQE  125 (298)
Q Consensus        87 ~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~~vD~s~~~l~  125 (298)
                      .++.+|+-+|+|. |..........+ ..++.+|.+++...
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~  216 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE  216 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence            3688999999975 544333333334 58999999986543

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=83.84  E-value=2.3  Score=38.66  Aligned_cols=99  Identities=17%  Similarity=0.105  Sum_probs=59.3

Q ss_pred             HHHHHhCCC-CCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC
Q psy2408          78 RIMINKTSI-TKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND  155 (298)
Q Consensus        78 ~~l~~~~~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  155 (298)
                      +.+++.... -.|.+|+=+|+|. |......++..|++|+++|.++.....+..    .|    ..+  .++.++   -.
T Consensus       242 d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~----~G----~~~--~~leel---l~  308 (476)
T PTZ00075        242 DGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM----EG----YQV--VTLEDV---VE  308 (476)
T ss_pred             HHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----cC----cee--ccHHHH---Hh
Confidence            444444322 3688999999996 555555555568999999888764433321    12    221  122222   14


Q ss_pred             CeeEEEecccccccChHHHH-HHHhhcccCCcEEEEEeCC
Q psy2408         156 SFDGGWFFESIFHMNHSAAL-NEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~~~l-~~~~r~LkpgG~l~i~~~~  194 (298)
                      ..|+|++.-     ....++ .+....+|||++|+-....
T Consensus       309 ~ADIVI~at-----Gt~~iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        309 TADIFVTAT-----GNKDIITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             cCCEEEECC-----CcccccCHHHHhccCCCcEEEEcCCC
Confidence            679987642     223344 4778889999988775444

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=83.70  E-value=7.3  Score=32.93  Aligned_cols=83  Identities=22%  Similarity=0.179  Sum_probs=46.5

Q ss_pred             eEEEeCCCC--CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccc
Q psy2408          91 RFIDIGCGF--GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFH  168 (298)
Q Consensus        91 ~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~  168 (298)
                      +|.=||+|.  |.++..+.+ .|.+|+++|.++..++.+...    +.   +.....+...    -...|+|+..-....
T Consensus         2 ~I~IIG~G~mG~sla~~L~~-~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~~~----~~~aDlVilavp~~~   69 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRS-LGHTVYGVSRRESTCERAIER----GL---VDEASTDLSL----LKDCDLVILALPIGL   69 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHC----CC---cccccCCHhH----hcCCCEEEEcCCHHH
Confidence            566788775  334444544 478999999999887776543    21   1111111111    145788876432211


Q ss_pred             cChHHHHHHHhhcccCCcE
Q psy2408         169 MNHSAALNEARRVLKSGSI  187 (298)
Q Consensus       169 ~~~~~~l~~~~r~LkpgG~  187 (298)
                      ..  .+++++...++++..
T Consensus        70 ~~--~~~~~l~~~l~~~~i   86 (279)
T PRK07417         70 LL--PPSEQLIPALPPEAI   86 (279)
T ss_pred             HH--HHHHHHHHhCCCCcE
Confidence            10  667777777776643

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.67  E-value=14  Score=31.42  Aligned_cols=93  Identities=19%  Similarity=0.081  Sum_probs=52.3

Q ss_pred             CeEEEeCCCC-CH-HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------cCC-C--------CceEEEECCCCCCC
Q psy2408          90 QRFIDIGCGF-GL-SGIRLAKAKGCRVDGITISKFQQESAMKTAKA-------EGL-L--------DKVNFLHGDALNLP  151 (298)
Q Consensus        90 ~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~~-~--------~~i~~~~~d~~~~~  151 (298)
                      .+|.=||+|. |. ++..++. .|..|+.+|.+++.++.+.+.+..       .+. +        .++.+ ..|...  
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--   80 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCAL-AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED--   80 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH--
Confidence            4688888886 32 2333333 578999999999988876554321       121 0        11222 223322  


Q ss_pred             CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEE
Q psy2408         152 FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILT  189 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~  189 (298)
                        -...|+|+..- .+...-. .+++++...++|+..++
T Consensus        81 --~~~aD~Vieav-pe~~~~k~~~~~~l~~~~~~~~ii~  116 (292)
T PRK07530         81 --LADCDLVIEAA-TEDETVKRKIFAQLCPVLKPEAILA  116 (292)
T ss_pred             --hcCCCEEEEcC-cCCHHHHHHHHHHHHhhCCCCcEEE
Confidence              13568776421 1111112 77788888888887654

>KOG1098|consensus

Probab=83.61  E-value=2.3  Score=39.49  Aligned_cols=36  Identities=14%  Similarity=0.173  Sum_probs=30.7

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCH
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISK  121 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~  121 (298)
                      +.++..|||+||.+|.+....++.+  +.-|+|+|+-|
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p   79 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP   79 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence            4678899999999999998888864  56899999865

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=83.42  E-value=2.6  Score=37.48  Aligned_cols=46  Identities=24%  Similarity=0.371  Sum_probs=36.6

Q ss_pred             CCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Q psy2408          84 TSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMK  129 (298)
Q Consensus        84 ~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~  129 (298)
                      ..+.++.+||=.|+ | .|..+..+++..|+++++++.+++..+.+++
T Consensus       189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~  236 (393)
T cd08246         189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA  236 (393)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence            35677889999997 4 3777777888789998999999988887765

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PRK06701 short chain dehydrogenase; Provisional

Probab=83.32  E-value=9.8  Score=32.26  Aligned_cols=102  Identities=18%  Similarity=0.104  Sum_probs=59.2

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCH-HHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC-----
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISK-FQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD-----  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~-~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----  153 (298)
                      .+.+||-.|+ +|.++..+++.   .|++|+.++.++ ..++.....+...+  .++.++..|+.+..     +.     
T Consensus        45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~  121 (290)
T PRK06701         45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVRE  121 (290)
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4568888885 44555555544   478999998764 23333333333333  35778889987631     10     


Q ss_pred             CCCeeEEEeccccccc----C----------------hH-HHHHHHhhcccCCcEEEEEe
Q psy2408         154 NDSFDGGWFFESIFHM----N----------------HS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~----~----------------~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .+.+|+|+.+......    .                .+ .+++.+.+.++++|.+++..
T Consensus       122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is  181 (290)
T PRK06701        122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG  181 (290)
T ss_pred             cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            1367888865443211    0                11 55556666677777776654

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=83.31  E-value=19  Score=31.13  Aligned_cols=100  Identities=17%  Similarity=0.180  Sum_probs=60.8

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC----C-----C
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL----N-----L  150 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~----~-----~  150 (298)
                      ....+.++.+||=.|+|. |..+..+++..|+. +++++.++...+.+++.    +.   ..++..+-.    .     .
T Consensus       155 ~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~---~~~i~~~~~~~~~~~~~~~~  227 (341)
T cd08262         155 RRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAM----GA---DIVVDPAADSPFAAWAAELA  227 (341)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CC---cEEEcCCCcCHHHHHHHHHH
Confidence            455667889999998653 55556666666775 88888888877776543    22   112221111    0     0


Q ss_pred             CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ....+.+|+|+-.     ......+.++.+.++++|+++....
T Consensus       228 ~~~~~~~d~vid~-----~g~~~~~~~~~~~l~~~g~~v~~g~  265 (341)
T cd08262         228 RAGGPKPAVIFEC-----VGAPGLIQQIIEGAPPGGRIVVVGV  265 (341)
T ss_pred             HhCCCCCCEEEEC-----CCCHHHHHHHHHHhccCCEEEEECC
Confidence            1123568888642     2222456777888999999887643

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=83.29  E-value=2.7  Score=36.34  Aligned_cols=64  Identities=22%  Similarity=0.205  Sum_probs=45.7

Q ss_pred             EEEeCCCCCHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC-CCCeeEEEec
Q psy2408          92 FIDIGCGFGLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD-NDSFDGGWFF  163 (298)
Q Consensus        92 vLDiGcG~G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~  163 (298)
                      |+|+-||.|.++.-+.+ .|.+ +.++|+++...+.-+.++..       .++..|+.++... -..+|+++..
T Consensus         1 vidLF~G~GG~~~Gl~~-aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~~~~dvl~gg   66 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQ-AGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDIPDFDILLGG   66 (315)
T ss_pred             CEEEecCccHHHHHHHH-cCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhCCCcCEEEec
Confidence            68999999999988876 5665 56799999888877776532       3456777766321 1358988764

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=83.06  E-value=8.3  Score=32.93  Aligned_cols=104  Identities=22%  Similarity=0.222  Sum_probs=57.3

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeC--CHHHHHHHHHHHHhcCCCCceEEEECCCCC-C--CCCC
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITI--SKFQQESAMKTAKAEGLLDKVNFLHGDALN-L--PFDN  154 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~--s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~  154 (298)
                      .....+.++.+||-.|+|. |..+..+++..|.+++.+..  +....+.++.    .++.. +.....+... +  ..+.
T Consensus       157 ~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~l~~~~~~  231 (306)
T cd08258         157 AERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKE----LGADA-VNGGEEDLAELVNEITDG  231 (306)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHH----hCCcc-cCCCcCCHHHHHHHHcCC
Confidence            3445567788888866543 55566667767888877643  3333444333    23211 1111111100 0  0123


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ..+|+++-+.     .....+....+.|+++|+++.....
T Consensus       232 ~~vd~vld~~-----g~~~~~~~~~~~l~~~G~~v~~g~~  266 (306)
T cd08258         232 DGADVVIECS-----GAVPALEQALELLRKGGRIVQVGIF  266 (306)
T ss_pred             CCCCEEEECC-----CChHHHHHHHHHhhcCCEEEEEccc
Confidence            5688876432     2225777888999999998876554

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=83.00  E-value=10  Score=36.13  Aligned_cols=91  Identities=18%  Similarity=0.091  Sum_probs=58.5

Q ss_pred             CCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEEec
Q psy2408          89 GQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGWFF  163 (298)
Q Consensus        89 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~  163 (298)
                      ..+|+=+|||. |.......+..+..++.+|.+++.++.+++.    +    ..++.+|..+..    ..-++.|++++.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF----G----MKVFYGDATRMDLLESAGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc----C----CeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence            35888888886 6654444443578999999999998888652    2    568999998752    123467777642


Q ss_pred             ccccccChH---HHHHHHhhcccCCcEEEEEe
Q psy2408         164 ESIFHMNHS---AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       164 ~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~  192 (298)
                           .+++   ..+-...|.+.|+-.++...
T Consensus       472 -----~~d~~~n~~i~~~ar~~~p~~~iiaRa  498 (621)
T PRK03562        472 -----IDDPQTSLQLVELVKEHFPHLQIIARA  498 (621)
T ss_pred             -----eCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence                 2333   33334455566776665543

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=82.84  E-value=4.3  Score=35.15  Aligned_cols=98  Identities=23%  Similarity=0.263  Sum_probs=62.5

Q ss_pred             CCCCCCCeEEEeCCC--CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC----C--CCCCC
Q psy2408          84 TSITKGQRFIDIGCG--FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN----L--PFDND  155 (298)
Q Consensus        84 ~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~----~--~~~~~  155 (298)
                      ..+.++.+||=.|+|  .|..+..+++..|.+++++..+++..+.++.    .+..   .++...-.+    +  ..+..
T Consensus       161 ~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~~~~~  233 (341)
T cd08297         161 AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKE----LGAD---AFVDFKKSDDVEAVKELTGGG  233 (341)
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCc---EEEcCCCccHHHHHHHHhcCC
Confidence            466788999998876  4777777888789999999999876665532    2321   111111101    0  01235


Q ss_pred             CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .+|+|+...     .....+..+.+.++++|+++....
T Consensus       234 ~vd~vl~~~-----~~~~~~~~~~~~l~~~g~~v~~g~  266 (341)
T cd08297         234 GAHAVVVTA-----VSAAAYEQALDYLRPGGTLVCVGL  266 (341)
T ss_pred             CCCEEEEcC-----CchHHHHHHHHHhhcCCEEEEecC
Confidence            688887311     112466778899999999987643

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=82.83  E-value=5.6  Score=31.83  Aligned_cols=94  Identities=12%  Similarity=0.030  Sum_probs=50.5

Q ss_pred             CCCeEEEeCCCC-CHH-HHHHHHhcCC-eEEEEeCC---HHHHH---------------HHHHHHHhcCCCCceEEEECC
Q psy2408          88 KGQRFIDIGCGF-GLS-GIRLAKAKGC-RVDGITIS---KFQQE---------------SAMKTAKAEGLLDKVNFLHGD  146 (298)
Q Consensus        88 ~~~~vLDiGcG~-G~~-~~~l~~~~~~-~v~~vD~s---~~~l~---------------~a~~~~~~~~~~~~i~~~~~d  146 (298)
                      ...+|+-+|||. |.. +..+++ .|. +++.+|.+   +..+.               .+.+.+.......++..+..+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~-~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~   98 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLAR-AGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK   98 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHH-cCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence            346899999985 443 444444 565 79999987   33222               223333332322234444444


Q ss_pred             CCCCCCC--CCCeeEEEecccccccChH-HHHHHHhhcccC
Q psy2408         147 ALNLPFD--NDSFDGGWFFESIFHMNHS-AALNEARRVLKS  184 (298)
Q Consensus       147 ~~~~~~~--~~~fD~V~~~~~l~~~~~~-~~l~~~~r~Lkp  184 (298)
                      +..-...  -..+|+|+..  ....... .+++.+.+.+++
T Consensus        99 i~~~~~~~~~~~~DlVi~a--~Dn~~~k~~l~~~~~~~~~~  137 (200)
T TIGR02354        99 ITEENIDKFFKDADIVCEA--FDNAEAKAMLVNAVLEKYKD  137 (200)
T ss_pred             CCHhHHHHHhcCCCEEEEC--CCCHHHHHHHHHHHHHHcCC
Confidence            3321110  1468998865  3443444 666777777664

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=82.72  E-value=11  Score=35.36  Aligned_cols=89  Identities=13%  Similarity=0.045  Sum_probs=54.3

Q ss_pred             CeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEEecc
Q psy2408          90 QRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGWFFE  164 (298)
Q Consensus        90 ~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~~  164 (298)
                      .+|+=+|||. |.......+..+..++.+|.+++.++.+++.        ....+.+|..+..    ..-+++|.++.. 
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a~i~~a~~viv~-  488 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLAHLDCARWLLLT-  488 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhcCccccCEEEEE-
Confidence            5777777775 4443333333478999999999888877642        2678999998741    123567766432 


Q ss_pred             cccccChH---HHHHHHhhcccCCcEEEEE
Q psy2408         165 SIFHMNHS---AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       165 ~l~~~~~~---~~l~~~~r~LkpgG~l~i~  191 (298)
                          .++.   ..+-...|...|...++..
T Consensus       489 ----~~~~~~~~~iv~~~~~~~~~~~iiar  514 (558)
T PRK10669        489 ----IPNGYEAGEIVASAREKRPDIEIIAR  514 (558)
T ss_pred             ----cCChHHHHHHHHHHHHHCCCCeEEEE
Confidence                2222   2233334556777766654

>KOG1269|consensus

Probab=82.52  E-value=6.6  Score=34.61  Aligned_cols=108  Identities=19%  Similarity=0.122  Sum_probs=70.2

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC-CCCceEEEECCCCCC----------------
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEG-LLDKVNFLHGDALNL----------------  150 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~-~~~~i~~~~~d~~~~----------------  150 (298)
                      +.++||.+|+.+.....+++.++ .+--|+++..+.+..+...-...+ ......+..+|+...                
T Consensus       181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~  260 (364)
T KOG1269|consen  181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGF  260 (364)
T ss_pred             cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccc
Confidence            56999999999999999988643 466778888777776665533311 111223333332221                


Q ss_pred             -------------CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCC
Q psy2408         151 -------------PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVS  199 (298)
Q Consensus       151 -------------~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~  199 (298)
                                   +++..++|.   ..++.|+++. .++......++|+|.+++.+.....+-
T Consensus       261 ~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~~p~  320 (364)
T KOG1269|consen  261 EHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRGLPE  320 (364)
T ss_pred             hhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCcCCc
Confidence                         112233444   5667777777 888899999999999999877654433

>PRK06940 short chain dehydrogenase; Provisional

Probab=82.50  E-value=24  Score=29.57  Aligned_cols=96  Identities=20%  Similarity=0.144  Sum_probs=59.1

Q ss_pred             eEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C----CCCCeeE
Q psy2408          91 RFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F----DNDSFDG  159 (298)
Q Consensus        91 ~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----~~~~fD~  159 (298)
                      .+|=.|+  |.++..+++.+  |.+|+++|.++..++...+.+...+  .++.++..|+.+..     +    ..+.+|+
T Consensus         4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~   79 (275)
T PRK06940          4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG   79 (275)
T ss_pred             EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence            5565564  46777777653  7899999998877666655554433  35778888887641     0    1256899


Q ss_pred             EEecccccccC-h-----------H-HHHHHHhhcccCCcEEEE
Q psy2408         160 GWFFESIFHMN-H-----------S-AALNEARRVLKSGSILTL  190 (298)
Q Consensus       160 V~~~~~l~~~~-~-----------~-~~l~~~~r~LkpgG~l~i  190 (298)
                      ++.+..+.... +           . .+++.+.+.++++|.+++
T Consensus        80 li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~  123 (275)
T PRK06940         80 LVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV  123 (275)
T ss_pred             EEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence            88766543221 1           1 345566666666665443

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=82.43  E-value=5.8  Score=29.79  Aligned_cols=90  Identities=20%  Similarity=0.199  Sum_probs=50.5

Q ss_pred             EEEeCCCC-CHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC----------CCCCCCCCCCeeE
Q psy2408          92 FIDIGCGF-GLS-GIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD----------ALNLPFDNDSFDG  159 (298)
Q Consensus        92 vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d----------~~~~~~~~~~fD~  159 (298)
                      |+=+|+|. |.+ +..|++ .+..|+.++-++ .++..++.    +    +.+...+          ....+...+.+|+
T Consensus         1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~-~~~~~~~~----g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~   70 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP-RLEAIKEQ----G----LTITGPDGDETVQPPIVISAPSADAGPYDL   70 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH-HHHHHHHH----C----EEEEETTEEEEEEEEEEESSHGHHHSTESE
T ss_pred             CEEECcCHHHHHHHHHHHH-CCCceEEEEccc-cHHhhhhe----e----EEEEecccceecccccccCcchhccCCCcE
Confidence            44566664 433 233333 588999999887 55554333    2    2222222          0000113468999


Q ss_pred             EEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         160 GWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       160 V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      |+..--  .......++.+.+.+.|+..+++..-
T Consensus        71 viv~vK--a~~~~~~l~~l~~~~~~~t~iv~~qN  102 (151)
T PF02558_consen   71 VIVAVK--AYQLEQALQSLKPYLDPNTTIVSLQN  102 (151)
T ss_dssp             EEE-SS--GGGHHHHHHHHCTGEETTEEEEEESS
T ss_pred             EEEEec--ccchHHHHHHHhhccCCCcEEEEEeC
Confidence            976421  11222888899999999977766533

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=82.21  E-value=7.4  Score=36.47  Aligned_cols=82  Identities=17%  Similarity=0.114  Sum_probs=51.9

Q ss_pred             hCCCCCCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhc-----C--CCCceEEEECCCCCCC-
Q psy2408          83 KTSITKGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAE-----G--LLDKVNFLHGDALNLP-  151 (298)
Q Consensus        83 ~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~-----~--~~~~i~~~~~d~~~~~-  151 (298)
                      ......+.+||-.|+ +|.++..+++.   .|.+|++++.+...++.....+...     +  ...++.++.+|+.+.. 
T Consensus        74 ~~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es  152 (576)
T PLN03209         74 ELDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ  152 (576)
T ss_pred             ccccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence            444456777887774 57777777665   3789999999887665544433221     1  1135788999998742 


Q ss_pred             C--CCCCeeEEEeccc
Q psy2408         152 F--DNDSFDGGWFFES  165 (298)
Q Consensus       152 ~--~~~~fD~V~~~~~  165 (298)
                      +  .-+..|+|+++..
T Consensus       153 I~~aLggiDiVVn~AG  168 (576)
T PLN03209        153 IGPALGNASVVICCIG  168 (576)
T ss_pred             HHHHhcCCCEEEEccc
Confidence            1  1146898887643

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=82.01  E-value=12  Score=35.68  Aligned_cols=92  Identities=17%  Similarity=0.057  Sum_probs=57.6

Q ss_pred             CeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEEecc
Q psy2408          90 QRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGWFFE  164 (298)
Q Consensus        90 ~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~~  164 (298)
                      .+|+=+|+|. |..........+..++.+|.+++.++.+++.    +    ..++.+|+.+..    ..-++.|++++. 
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~agi~~A~~vv~~-  471 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY----G----YKVYYGDATQLELLRAAGAEKAEAIVIT-  471 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC----C----CeEEEeeCCCHHHHHhcCCccCCEEEEE-
Confidence            4677777664 4443333333578999999999988887642    2    568999998742    123467776542 


Q ss_pred             cccccChH---HHHHHHhhcccCCcEEEEEeCC
Q psy2408         165 SIFHMNHS---AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       165 ~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                          .+++   ..+-...|.+.|...++.....
T Consensus       472 ----~~d~~~n~~i~~~~r~~~p~~~IiaRa~~  500 (601)
T PRK03659        472 ----CNEPEDTMKIVELCQQHFPHLHILARARG  500 (601)
T ss_pred             ----eCCHHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence                2333   3333445567788887775443

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=82.01  E-value=15  Score=31.24  Aligned_cols=92  Identities=17%  Similarity=0.135  Sum_probs=49.9

Q ss_pred             eEEEeCCCC-CH-HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC---CceEEEECCCCCCCCCCCCeeEEEeccc
Q psy2408          91 RFIDIGCGF-GL-SGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLL---DKVNFLHGDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        91 ~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      +|+=+|+|. |. ++..|++ .|..|+.++.+++.++..++.    ++.   ........-..+.. +.+.+|+|+..--
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~k   75 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQ-AGHDVTLVARRGAHLDALNEN----GLRLEDGEITVPVLAADDPA-ELGPQDLVILAVK   75 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCeEEEEECChHHHHHHHHc----CCcccCCceeecccCCCChh-HcCCCCEEEEecc
Confidence            678889886 33 3334444 578999999977666555432    321   11100000011111 1257898876433


Q ss_pred             ccccChH-HHHHHHhhcccCCcEEEEE
Q psy2408         166 IFHMNHS-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       166 l~~~~~~-~~l~~~~r~LkpgG~l~i~  191 (298)
                      -.   +. .+++.+...+.++..++..
T Consensus        76 ~~---~~~~~~~~l~~~l~~~~~iv~~   99 (304)
T PRK06522         76 AY---QLPAALPSLAPLLGPDTPVLFL   99 (304)
T ss_pred             cc---cHHHHHHHHhhhcCCCCEEEEe
Confidence            21   22 7777888888777665543

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=81.96  E-value=7.3  Score=31.84  Aligned_cols=66  Identities=24%  Similarity=0.160  Sum_probs=42.0

Q ss_pred             eEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEEe
Q psy2408          91 RFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGWF  162 (298)
Q Consensus        91 ~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~  162 (298)
                      +++=+|||. |..........|..|+.+|.+++.++.....-      .....+++|..+..    ..-..+|++++
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~------~~~~~v~gd~t~~~~L~~agi~~aD~vva   72 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE------LDTHVVIGDATDEDVLEEAGIDDADAVVA   72 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh------cceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence            577788875 43333222225789999999998777633210      12678888887741    22367888875

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=81.89  E-value=32  Score=29.44  Aligned_cols=97  Identities=18%  Similarity=0.126  Sum_probs=60.6

Q ss_pred             hCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCCCC
Q psy2408          83 KTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFDND  155 (298)
Q Consensus        83 ~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~  155 (298)
                      ...+.++.+||=.|+ | .|..+..+++..|.++++++.+++..+.++.    .+..   .++..+-..+     ....+
T Consensus       134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~~~~  206 (329)
T cd08250         134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKS----LGCD---RPINYKTEDLGEVLKKEYPK  206 (329)
T ss_pred             hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHH----cCCc---eEEeCCCccHHHHHHHhcCC
Confidence            345678889998884 3 4777777888778899999988877666643    2321   1222111111     01124


Q ss_pred             CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .+|+|+...     .. ..+..+.+.|+++|+++...
T Consensus       207 ~vd~v~~~~-----g~-~~~~~~~~~l~~~g~~v~~g  237 (329)
T cd08250         207 GVDVVYESV-----GG-EMFDTCVDNLALKGRLIVIG  237 (329)
T ss_pred             CCeEEEECC-----cH-HHHHHHHHHhccCCeEEEEe
Confidence            588887422     11 46677888999999987653

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PF14740 DUF4471: Domain of unknown function (DUF4471)

Probab=81.80  E-value=4.2  Score=34.47  Aligned_cols=67  Identities=18%  Similarity=0.335  Sum_probs=41.2

Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCc
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFE  233 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  233 (298)
                      .+.||+|+.....-|+-.|    ++.++++|+|.|++-..-..-... ......+           .+.+.++++++||+
T Consensus       220 ~~~Fd~ifvs~s~vh~L~p----~l~~~~a~~A~LvvEtaKfmvdLr-KEq~~~F-----------~~kv~eLA~~aG~~  283 (289)
T PF14740_consen  220 QNFFDLIFVSCSMVHFLKP----ELFQALAPDAVLVVETAKFMVDLR-KEQLQEF-----------VKKVKELAKAAGFK  283 (289)
T ss_pred             cCCCCEEEEhhhhHhhcch----HHHHHhCCCCEEEEEcchhheeCC-HHHHHHH-----------HHHHHHHHHHCCCc
Confidence            3679999765544433332    377788999998886543322232 1222222           23688899999998


Q ss_pred             EEE
Q psy2408         234 LIK  236 (298)
Q Consensus       234 ~~~  236 (298)
                      .+.
T Consensus       284 p~~  286 (289)
T PF14740_consen  284 PVT  286 (289)
T ss_pred             ccc
Confidence            654

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=81.74  E-value=24  Score=29.74  Aligned_cols=93  Identities=18%  Similarity=0.149  Sum_probs=59.7

Q ss_pred             CCCCCCeEEEeCCC--CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEe
Q psy2408          85 SITKGQRFIDIGCG--FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWF  162 (298)
Q Consensus        85 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~  162 (298)
                      ...++.+||=.|++  .|..+..+++..|+++++++.+++..+.+++    .+..   ..+. +..++  ..+.+|+++-
T Consensus       129 ~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~-~~~~~--~~~~~d~vl~  198 (305)
T cd08270         129 GPLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE----LGAA---EVVV-GGSEL--SGAPVDLVVD  198 (305)
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEe-ccccc--cCCCceEEEE
Confidence            33358899998883  3666667777678999999988877777654    2322   1111 11122  2246888874


Q ss_pred             cccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         163 FESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       163 ~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ..     .. ..+....+.|+++|+++....
T Consensus       199 ~~-----g~-~~~~~~~~~l~~~G~~v~~g~  223 (305)
T cd08270         199 SV-----GG-PQLARALELLAPGGTVVSVGS  223 (305)
T ss_pred             CC-----Cc-HHHHHHHHHhcCCCEEEEEec
Confidence            31     12 356778899999999887643

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=81.56  E-value=25  Score=29.70  Aligned_cols=99  Identities=20%  Similarity=0.263  Sum_probs=54.7

Q ss_pred             CCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEe
Q psy2408          85 SITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWF  162 (298)
Q Consensus        85 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~  162 (298)
                      .+.++.+||-.|+ | .|..+..+++..|+++++++.+ ...+.++    ..+...-+.....+........+.+|+|+.
T Consensus       140 ~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~  214 (319)
T cd08267         140 KVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVR----SLGADEVIDYTTEDFVALTAGGEKYDVIFD  214 (319)
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHH----HcCCCEeecCCCCCcchhccCCCCCcEEEE
Confidence            3678899999997 3 4777777787778999998854 4444443    223211011111111010123456898875


Q ss_pred             cccccccChH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         163 FESIFHMNHS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       163 ~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +..-    .. .....+. .++++|+++....
T Consensus       215 ~~~~----~~~~~~~~~~-~l~~~g~~i~~g~  241 (319)
T cd08267         215 AVGN----SPFSLYRASL-ALKPGGRYVSVGG  241 (319)
T ss_pred             CCCc----hHHHHHHhhh-ccCCCCEEEEecc
Confidence            3221    12 3333333 3999999887643

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK06914 short chain dehydrogenase; Provisional

Probab=81.54  E-value=12  Score=31.28  Aligned_cols=77  Identities=16%  Similarity=0.018  Sum_probs=49.2

Q ss_pred             CCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-C--------CCCC
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-F--------DNDS  156 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~--------~~~~  156 (298)
                      +.++|-.|+ +|.++..+++.   .|++|++++-+++.++.........+...++.++.+|+.+.. .        .-+.
T Consensus         3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   81 (280)
T PRK06914          3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR   81 (280)
T ss_pred             CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence            346787774 44555555543   378999999888766665555444444456888999987742 0        0145


Q ss_pred             eeEEEecccc
Q psy2408         157 FDGGWFFESI  166 (298)
Q Consensus       157 fD~V~~~~~l  166 (298)
                      .|.|+.+...
T Consensus        82 id~vv~~ag~   91 (280)
T PRK06914         82 IDLLVNNAGY   91 (280)
T ss_pred             eeEEEECCcc
Confidence            7888766443

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=81.28  E-value=14  Score=32.80  Aligned_cols=92  Identities=15%  Similarity=0.165  Sum_probs=58.1

Q ss_pred             eEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEECCCCCCCCCCCCeeEEEeccccccc
Q psy2408          91 RFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK-VNFLHGDALNLPFDNDSFDGGWFFESIFHM  169 (298)
Q Consensus        91 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~  169 (298)
                      +||-++=..|.++..++. .+.. ...| |--.-...+.++...+++.. +++.  +... +++ +.+|+|+.     .+
T Consensus        47 ~~~i~nd~fGal~~~l~~-~~~~-~~~d-s~~~~~~~~~n~~~n~~~~~~~~~~--~~~~-~~~-~~~d~vl~-----~~  114 (378)
T PRK15001         47 PVLILNDAFGALSCALAE-HKPY-SIGD-SYISELATRENLRLNGIDESSVKFL--DSTA-DYP-QQPGVVLI-----KV  114 (378)
T ss_pred             CEEEEcCchhHHHHHHHh-CCCC-eeeh-HHHHHHHHHHHHHHcCCCcccceee--cccc-ccc-CCCCEEEE-----Ee
Confidence            899999999999999986 3322 1233 33333445556666666533 3333  2222 233 45898864     33


Q ss_pred             ChH-----HHHHHHhhcccCCcEEEEEeCC
Q psy2408         170 NHS-----AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       170 ~~~-----~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      |..     ..+..+.++|.||+.+++....
T Consensus       115 PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~  144 (378)
T PRK15001        115 PKTLALLEQQLRALRKVVTSDTRIIAGAKA  144 (378)
T ss_pred             CCCHHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence            332     6778888999999998876554

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=80.83  E-value=20  Score=30.65  Aligned_cols=97  Identities=19%  Similarity=0.224  Sum_probs=60.1

Q ss_pred             CCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC-CCC------CCCCC
Q psy2408          84 TSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA-LNL------PFDND  155 (298)
Q Consensus        84 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~-~~~------~~~~~  155 (298)
                      ..+.++.+|+=.|+|. |..+..+++..|++++.++.++...+.+.+.    +..   .++..+- ..+      -....
T Consensus       156 ~~~~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~  228 (336)
T cd08276         156 GPLKPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERAKAL----GAD---HVINYRTTPDWGEEVLKLTGGR  228 (336)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EEEcCCcccCHHHHHHHHcCCC
Confidence            3566788888776653 5555566666789999999998877776542    321   1222111 111      01234


Q ss_pred             CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .+|+++.+.     . ...+..+.+.|+++|+++....
T Consensus       229 ~~d~~i~~~-----~-~~~~~~~~~~l~~~G~~v~~g~  260 (336)
T cd08276         229 GVDHVVEVG-----G-PGTLAQSIKAVAPGGVISLIGF  260 (336)
T ss_pred             CCcEEEECC-----C-hHHHHHHHHhhcCCCEEEEEcc
Confidence            688887532     1 2456678899999999887543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=80.66  E-value=3.4  Score=36.05  Aligned_cols=99  Identities=15%  Similarity=0.101  Sum_probs=59.5

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----C-CC
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----P-FD  153 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~  153 (298)
                      ....+.++.+||=.|+|. |..+..+++..|+ .++++|.++...+.+.+.    +..   .++...-..+     . .+
T Consensus       168 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~~~~~~  240 (350)
T cd08256         168 DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKF----GAD---VVLNPPEVDVVEKIKELTG  240 (350)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHc----CCc---EEecCCCcCHHHHHHHHhC
Confidence            455667888888877654 6666677776775 578899888766655432    321   1221111110     0 12


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ...+|+|+..     ......+..+.+.++++|+++...
T Consensus       241 ~~~vdvvld~-----~g~~~~~~~~~~~l~~~G~~v~~g  274 (350)
T cd08256         241 GYGCDIYIEA-----TGHPSAVEQGLNMIRKLGRFVEFS  274 (350)
T ss_pred             CCCCCEEEEC-----CCChHHHHHHHHHhhcCCEEEEEc
Confidence            2358888642     232345777889999999987753

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>PRK07454 short chain dehydrogenase; Provisional

Probab=80.61  E-value=17  Score=29.60  Aligned_cols=76  Identities=17%  Similarity=-0.021  Sum_probs=50.4

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC-----C
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD-----N  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~  154 (298)
                      ...++|-.|+ +|.++..+++.   .|.+|++++.++...+.........+  .++.++.+|+.+..     +.     .
T Consensus         5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (241)
T PRK07454          5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQF   81 (241)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3457888874 66776666665   37899999998876665555444322  45788899987742     10     1


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +..|+++.+...
T Consensus        82 ~~id~lv~~ag~   93 (241)
T PRK07454         82 GCPDVLINNAGM   93 (241)
T ss_pred             CCCCEEEECCCc
Confidence            457998876554

>PRK06128 oxidoreductase; Provisional

Probab=80.60  E-value=25  Score=29.84  Aligned_cols=101  Identities=18%  Similarity=0.093  Sum_probs=58.7

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHH--HHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKF--QQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----  152 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~--~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----  152 (298)
                      .+.+||-.|+ +|.++..+++.   .|++|+.+..+..  ..+...+.+...+  .++.++.+|+.+..     +     
T Consensus        54 ~~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~  130 (300)
T PRK06128         54 QGRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK  130 (300)
T ss_pred             CCCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence            3568888885 55555566554   3788887765432  2333333333333  35778888987631     0     


Q ss_pred             CCCCeeEEEeccccccc-------Ch-------------H-HHHHHHhhcccCCcEEEEE
Q psy2408         153 DNDSFDGGWFFESIFHM-------NH-------------S-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~-------~~-------------~-~~l~~~~r~LkpgG~l~i~  191 (298)
                      .-+..|+++.+......       ..             . .+++.+.+.++++|.++..
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~  190 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT  190 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence            01468999876654211       10             1 3556666777788887764

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=80.59  E-value=4.3  Score=34.74  Aligned_cols=100  Identities=15%  Similarity=0.078  Sum_probs=62.9

Q ss_pred             HHhCCCCCCCeEEEeCC--CCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC----C--CC
Q psy2408          81 INKTSITKGQRFIDIGC--GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN----L--PF  152 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~----~--~~  152 (298)
                      .....+.++.+||=.|+  +.|..+..+++..|.++++++.+++..+.++.    .+..   .++...-..    +  ..
T Consensus       135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~  207 (324)
T cd08244         135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRA----LGAD---VAVDYTRPDWPDQVREAL  207 (324)
T ss_pred             HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCC---EEEecCCccHHHHHHHHc
Confidence            44556678889998884  34677777888789999999998887766643    2321   122211111    0  01


Q ss_pred             CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ....+|+|+.+.     ... ....+.+.|+++|+++....
T Consensus       208 ~~~~~d~vl~~~-----g~~-~~~~~~~~l~~~g~~v~~g~  242 (324)
T cd08244         208 GGGGVTVVLDGV-----GGA-IGRAALALLAPGGRFLTYGW  242 (324)
T ss_pred             CCCCceEEEECC-----ChH-hHHHHHHHhccCcEEEEEec
Confidence            234689987532     222 34778899999999886543

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=80.51  E-value=14  Score=30.52  Aligned_cols=76  Identities=20%  Similarity=0.115  Sum_probs=52.4

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-C---------CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-F---------DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~  154 (298)
                      .+.++|=.| |+|.++..+++.   .|++|+.++.+...++.....+...+  .++.++.+|+.+.. .         ..
T Consensus        11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~   87 (259)
T PRK08213         11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF   87 (259)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            456888888 566777777765   37899999999877776665554332  35778899988741 1         01


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +.+|.|+.+...
T Consensus        88 ~~id~vi~~ag~   99 (259)
T PRK08213         88 GHVDILVNNAGA   99 (259)
T ss_pred             CCCCEEEECCCC
Confidence            468988876543

>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional

Probab=80.49  E-value=6.8  Score=36.73  Aligned_cols=61  Identities=15%  Similarity=0.084  Sum_probs=46.0

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      .+..+|| +.||+|.-+..+++                ...++.++++|++  +++.++|+.+.+-..+.+|+|++...+
T Consensus       504 ~k~mKIL-vaCGsGiGTStmva----------------~kIkk~Lke~GI~--veV~~~~Vsev~s~~~~aDIIVtt~~L  564 (602)
T PRK09548        504 GKPVRIL-AVCGQGQGSSMMMK----------------MKIKKYLDKRGIP--IIMDSCAVNDYKGKLETIDIIVCSKHL  564 (602)
T ss_pred             CcccEEE-EECCCCchHHHHHH----------------HHHHHHHHHcCCC--eEEEEechHhCcccCCCCCEEEEcccc
Confidence            4556777 88999988877776                4567777888885  678899998876445679999886554

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=80.45  E-value=3.2  Score=35.28  Aligned_cols=74  Identities=14%  Similarity=0.008  Sum_probs=44.6

Q ss_pred             CCCCHHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHhcCCCCceE----EEECCCCCC-----CCCCCCeeEEEec
Q psy2408          97 CGFGLSGIRLAKAK----GCRVDGITISKFQQESAMKTAKAEGLLDKVN----FLHGDALNL-----PFDNDSFDGGWFF  163 (298)
Q Consensus        97 cG~G~~~~~l~~~~----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~----~~~~d~~~~-----~~~~~~fD~V~~~  163 (298)
                      .|+|.++..|+++.    ..+++.+|.++..+-..+..+.......++.    .+.+|+.+.     -+....+|+|+-.
T Consensus         5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHa   84 (293)
T PF02719_consen    5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHA   84 (293)
T ss_dssp             TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE-
T ss_pred             ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEEC
Confidence            47899999998862    3689999999999998888875332222344    457888764     2455689999988


Q ss_pred             ccccccC
Q psy2408         164 ESIFHMN  170 (298)
Q Consensus       164 ~~l~~~~  170 (298)
                      .++-|++
T Consensus        85 AA~KhVp   91 (293)
T PF02719_consen   85 AALKHVP   91 (293)
T ss_dssp             -----HH
T ss_pred             hhcCCCC
Confidence            8888875

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=80.34  E-value=11  Score=34.99  Aligned_cols=82  Identities=15%  Similarity=0.138  Sum_probs=63.0

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CCCCCee
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK----GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FDNDSFD  158 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~fD  158 (298)
                      .|++||--| |+|.++..++++.    ..+++.+|.++..+......+...-...++.++-+|+.+..     +..-+.|
T Consensus       249 ~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd  327 (588)
T COG1086         249 TGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD  327 (588)
T ss_pred             CCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence            467888666 6788888887752    46899999999998888887776422356889999998852     4455799


Q ss_pred             EEEecccccccC
Q psy2408         159 GGWFFESIFHMN  170 (298)
Q Consensus       159 ~V~~~~~l~~~~  170 (298)
                      .|+-..++-|+|
T Consensus       328 ~VfHAAA~KHVP  339 (588)
T COG1086         328 IVFHAAALKHVP  339 (588)
T ss_pred             eEEEhhhhccCc
Confidence            999888888887

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=80.34  E-value=14  Score=30.32  Aligned_cols=76  Identities=20%  Similarity=0.093  Sum_probs=50.4

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-C---------CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-F---------DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~  154 (298)
                      .+.+||-.|+ +|.++..+++.   .|++|+.++.+++.++.....+...+  .++.++.+|+.+.. .         ..
T Consensus        10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (256)
T PRK06124         10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEH   86 (256)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            4678888885 55556666554   48899999999877766655554433  35788888987631 0         11


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +.+|.++.+...
T Consensus        87 ~~id~vi~~ag~   98 (256)
T PRK06124         87 GRLDILVNNVGA   98 (256)
T ss_pred             CCCCEEEECCCC
Confidence            467888865443

>KOG1198|consensus

Probab=80.21  E-value=3.9  Score=35.84  Aligned_cols=117  Identities=17%  Similarity=0.106  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHhC------CCCCCCeEEEeCCCC--CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCce
Q psy2408          69 FAQGSDKLSRIMINKT------SITKGQRFIDIGCGF--GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKV  140 (298)
Q Consensus        69 ~~~~~~~~~~~l~~~~------~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i  140 (298)
                      +..+.-.....+....      +.+++..||=+|.++  |..+..+++..+...+...-|.+.++.++..    |...-+
T Consensus       132 ~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~l----GAd~vv  207 (347)
T KOG1198|consen  132 LPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKL----GADEVV  207 (347)
T ss_pred             CchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHc----CCcEee
Confidence            3334444555555666      678899999998776  5667777887675555666788888877765    322112


Q ss_pred             EEEECCCCCCCCC--CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         141 NFLHGDALNLPFD--NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       141 ~~~~~d~~~~~~~--~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ++...|+.+....  ...||+|+-+-.-.     .....+...+++|+..++....
T Consensus       208 dy~~~~~~e~~kk~~~~~~DvVlD~vg~~-----~~~~~~~~l~~~g~~~~i~~~~  258 (347)
T KOG1198|consen  208 DYKDENVVELIKKYTGKGVDVVLDCVGGS-----TLTKSLSCLLKGGGGAYIGLVG  258 (347)
T ss_pred             cCCCHHHHHHHHhhcCCCccEEEECCCCC-----ccccchhhhccCCceEEEEecc
Confidence            2222222222111  46799987433221     1222334445566655554433

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=80.18  E-value=10  Score=32.45  Aligned_cols=96  Identities=17%  Similarity=0.173  Sum_probs=57.8

Q ss_pred             CCCCCC-eEEEeCC-CC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCC-CC-CCCCCCee
Q psy2408          85 SITKGQ-RFIDIGC-GF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DAL-NL-PFDNDSFD  158 (298)
Q Consensus        85 ~~~~~~-~vLDiGc-G~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~-~~-~~~~~~fD  158 (298)
                      .+.++. +||=.|+ |. |..+..+++..|++++.++-+++..+.+++    .+..   .++.. +.. .. ....+.+|
T Consensus       141 ~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~d  213 (323)
T TIGR02823       141 GLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLKE----LGAS---EVIDREDLSPPGKPLEKERWA  213 (323)
T ss_pred             CCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHh----cCCc---EEEccccHHHHHHHhcCCCce
Confidence            356787 9999997 43 777777787778888888777766555532    2321   11111 100 00 11123488


Q ss_pred             EEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +++-..     .. ..+..+.+.|+++|+++....
T Consensus       214 ~vld~~-----g~-~~~~~~~~~l~~~G~~v~~g~  242 (323)
T TIGR02823       214 GAVDTV-----GG-HTLANVLAQLKYGGAVAACGL  242 (323)
T ss_pred             EEEECc-----cH-HHHHHHHHHhCCCCEEEEEcc
Confidence            775432     12 345678888999999887643

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=80.12  E-value=4.1  Score=33.83  Aligned_cols=58  Identities=21%  Similarity=0.107  Sum_probs=40.8

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA  133 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~  133 (298)
                      +++..|.+.++..+..+++|.=||+|.++..+.. .+.+++.-|+++......+..+..
T Consensus         7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~~l~~   64 (260)
T PF02086_consen    7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKAVLKN   64 (260)
T ss_dssp             GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHHHHhc
Confidence            4567777777532678999999999999988876 577999999999888877755543

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=80.05  E-value=4.3  Score=32.50  Aligned_cols=32  Identities=22%  Similarity=0.230  Sum_probs=22.5

Q ss_pred             CCCeEEEeCCCC-CHH-HHHHHHhcC-CeEEEEeCC
Q psy2408          88 KGQRFIDIGCGF-GLS-GIRLAKAKG-CRVDGITIS  120 (298)
Q Consensus        88 ~~~~vLDiGcG~-G~~-~~~l~~~~~-~~v~~vD~s  120 (298)
                      ...+||=+|||. |.. +..|+. .| .+++.+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~-~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAG-AGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH-cCCCeEEEecCC
Confidence            456999999995 544 444444 55 489999986

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	298
3bus_A	273	Crystal Structure Of Rebm Length = 273		5e-29
3l8d_A	242	Crystal Structure Of Methyltransferase From Bacillu		1e-08
4f84_A	320	Structure Analysis Of Geranyl Diphosphate Methyltra		2e-08
3mgg_A	276	Crystal Structure Of Methyl Transferase From Methan		1e-07
3uj7_A	266	Phosphoethanolamine Methyltransferase From Plasmodi		2e-07
3ujd_A	266	Phosphoethanolamine Methyltransferase Mutant (Y19f)		2e-07
3dlc_A	219	Crystal Structure Of A Putative S-Adenosyl-L-Methio		3e-07
3uj6_A	266	Semet Phosphoethanolamine Methyltransferase From Pl		3e-07
2o57_A	297	Crystal Structure Of A Putative Sarcosine Dimethylg		7e-07
3vc1_A	312	Crystal Structure Of Geranyl Diphosphate C-Methyltr		2e-06
3ujc_A	266	Phosphoethanolamine Methyltransferase Mutant (H132a		2e-06
3kkz_A	267	Crystal Structure Of The Q5les9_bacfn Protein From		4e-06
1wzn_A	252	Crystal Structure Of The Sam-Dependent Methyltransf		5e-06
1vlm_A	219	Crystal Structure Of Sam-Dependent Methyltransferas		9e-06
3f4k_A	257	Crystal Structure Of A Probable Methyltransferase F		1e-05
3svz_A	263	Crystal Structure Of Apo Bt_2972, A Methyltransfera		1e-05
1ve3_A	227	Crystal Structure Of Ph0226 Protein From Pyrococcus		2e-05
4hc4_A	376	Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (		7e-05
1kp9_A	287	Crystal Structure Of Mycolic Acid Cyclopropane Synt		2e-04
2p8j_A	209	Crystal Structure Of S-Adenosylmethionine-Dependent		2e-04
3e7p_A	270	Crystal Structure Of Of Putative Methyltransferase		2e-04
3t7r_A	268	Crystal Structure Of Apo Bvu_3255, A Methyltransfer		3e-04
3ege_A	261	Crystal Structure Of Putative Methyltransferase Fro		3e-04
1kpg_A	287	Crystal Structure Of Mycolic Acid Cyclopropane Synt		7e-04

>pdb|3BUS|A Chain A, Crystal Structure Of Rebm Length = 273

Iteration: 1
 Score =  124 bits (312), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 131/258 (50%), Gaps = 18/258 (6%)
Query: 50  LFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA 109
           ++G ++H+GYW+++ +  +    +D+L+   I    +  G R +D+GCG G   +RLA A
Sbjct: 23  IWGENLHFGYWEDAGADVSVDDATDRLTDEXIALLDVRSGDRVLDVGCGIGKPAVRLATA 82
Query: 110 KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM 169
           +  RV GI+IS+ Q   A   A A GL ++V F + DA +LPF++ SFD  W  ES+ H 
Sbjct: 83  RDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAXDLPFEDASFDAVWALESLHHX 142
Query: 170 -NHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFIL----VEHYP 224
            +   AL E  RVL+ G  + + D  LL+  +     KE V        +L    ++ Y 
Sbjct: 143 PDRGRALREXARVLRPGGTVAIADFVLLAPVEGAK--KEAVDAFRAGGGVLSLGGIDEYE 200
Query: 225 DLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNP---EKSIDNWLYLF 281
             + ++   +    DI++   P LV K  EA    + ++      P    + +D  +  F
Sbjct: 201 SDVRQAELVVTSTVDISAQARPSLV-KTAEAFENARSQV-----EPFXGAEGLDRXIATF 254
Query: 282 KYMSK--NLGYIIVTAKK 297
           + +++    GY+++ A+K
Sbjct: 255 RGLAEVPEAGYVLIGARK 272

>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus Thuringiensis Length = 242

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 59  YWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGIT 118
           +W++ NS++ +  GS + + I   +  + K    +D+GCG G    +L++  G +  G+ 
Sbjct: 26  FWNQ-NSQEXWDSGS-RSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVD 82
Query: 119 ISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNE 177
           IS    E  ++  K  G    ++F+ GD  +LPF+N+ F+      S+        ALNE
Sbjct: 83  IS----EVXIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIXAINSLEWTEEPLRALNE 138
Query: 178 ARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI 235
            +RVLKS     +  L   +    +N +     K++  N      +  L+ + GF+++
Sbjct: 139 IKRVLKSDGYACIAILG-PTAKPRENSYPRLYGKDVVCNTXXPWEFEQLVKEQGFKVV 195

>pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate Methyltransferase In Complex With Sam Length = 320

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 90/217 (41%), Gaps = 23/217 (10%)
Query: 86  ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG 145
           +  G   +D GCG G S +   +  GC+V+G+T+S  Q E   + A+  G+ D V     
Sbjct: 123 VGPGDTLVDAGCGRGGSMVMAHQRFGCKVEGVTLSAAQAEFGNRRARELGIDDHVRSRVC 182
Query: 146 DALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLK-SGSILTLTDL--PLL-SVSKN 201
           + L+ PF+  +    W  ES  +++      E  R L+  G  +T+T    P     SK 
Sbjct: 183 NMLDTPFEKGTVAASWNNESSMYVDLHDVFAEHSRFLRVGGRYVTVTGCWNPRYGQPSKW 242
Query: 202 DNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKK 261
            ++   + + NIHS       Y   +  +      + D+T   +P    + T + +T  +
Sbjct: 243 VSQINAHFECNIHSR----REYLRAMADNRLVPQTVVDLTPETLPYWELRATSSLVTGIE 298
Query: 262 EIYKSIPNPEKSIDNWLYLFKYMSKNLGYIIVTAKKI 298
           E                ++  Y   +  Y+++ A ++
Sbjct: 299 EA---------------FIESYRDGSFQYVLIAADRV 320

>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 19/185 (10%)
Query: 68  NFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAK-AKGCRVDGITISKFQQES 126
             ++ ++ L +++ + T    G + ++ GCG G   + LAK      +  I IS    E 
Sbjct: 17  RLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEK 76
Query: 127 AMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSG 185
           A +  +  G+ + V FL  +  +LPF++ SFD  +    + H+     AL   ++VLK G
Sbjct: 77  ARENTEKNGIKN-VKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPG 135
Query: 186 SILTLTDLPLLSVSKNDN------------KFKEYVKKNIHSNFILVEHYPDLLNKSGFE 233
             +T+ +    S   +              + + Y K N   + +  + YP LL +SGFE
Sbjct: 136 GTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYXKGN---SLVGRQIYP-LLQESGFE 191
Query: 234 LIKID 238
            I+++
Sbjct: 192 KIRVE 196

>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium Falciparum In Complex With Sam And Po4 Length = 266

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 7/182 (3%)
Query: 70  AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
           + G  + ++ +++   + +  + +DIG G G   + + +  G    GI I        M 
Sbjct: 37  SSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDIC--SNIVNMA 94
Query: 130 TAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM---NHSAALNEARRVLKSGS 186
             +  G  +K+ F   D L   F  ++FD  +  ++I H+   N +    +  + LK   
Sbjct: 95  NERVSGN-NKIIFEANDILTKEFPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTG 153
Query: 187 ILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMP 246
            L +TD         D++FKEYVK+  ++  I VE Y D+L    F+ +   D++ +   
Sbjct: 154 TLLITDYCATEKENWDDEFKEYVKQRKYT-LITVEEYADILTACNFKNVVSKDLSDYWNQ 212
Query: 247 LL 248
           LL
Sbjct: 213 LL 214

>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From Plasmodium Falciparum In Complex With Phosphocholine Length = 266

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 7/182 (3%)
Query: 70  AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
           + G  + ++ +++   + +  + +DIG G G   + + +  G    GI I        M 
Sbjct: 37  SSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDIC--SNIVNMA 94
Query: 130 TAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM---NHSAALNEARRVLKSGS 186
             +  G  +K+ F   D L   F  ++FD  +  ++I H+   N +    +  + LK   
Sbjct: 95  NERVSGN-NKIIFEANDILTKEFPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTG 153
Query: 187 ILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMP 246
            L +TD         D++FKEYVK+  ++  I VE Y D+L    F+ +   D++ +   
Sbjct: 154 TLLITDYCATEKENWDDEFKEYVKQRKYT-LITVEEYADILTACNFKNVVSKDLSDYWNQ 212
Query: 247 LL 248
           LL
Sbjct: 213 LL 214

>pdb|3DLC|A Chain A, Crystal Structure Of A Putative S-Adenosyl-L-Methionine-Dependent Methyltransferase (Mmp1179) From Methanococcus Maripaludis At 1.15 A Resolution Length = 219

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 16/184 (8%)
Query: 65  SKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQ 124
           SK  FA     ++  +IN+  IT G   IDIG G G   I LAK     +  +  SK   
Sbjct: 21  SKTLFAPIYPIIAENIINRFGITAGT-CIDIGSGPGALSIALAKQSDFSIRALDFSKHXN 79
Query: 125 ESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSA-ALNEARRVLK 183
           E A+K      L D++  + GD  N+P +++  D      S+F     A A  E  R+LK
Sbjct: 80  EIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILK 139
Query: 184 SGSIL---------TLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG--- 231
           SG             L D       + +  +KE+ +KNI      VE + ++L++ G   
Sbjct: 140 SGGKTYIGGGFGNKELRDSISAEXIRKNPDWKEFNRKNISQEN--VERFQNVLDEIGISS 197
Query: 232 FELI 235
           +E+I
Sbjct: 198 YEII 201

>pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From Plasmodium Falciparum In Complex With Sam And Po4 Length = 266

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 7/182 (3%)
Query: 70  AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
           + G  + ++ +++   + +  + +DIG G G     + +  G    GI I       A +
Sbjct: 37  SSGGLEATKKILSDIELNENSKVLDIGSGLGGGCXYINEKYGAHTHGIDICSNIVNXANE 96
Query: 130 TAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM---NHSAALNEARRVLKSGS 186
                   +K+ F   D L   F  ++FD  +  ++I H+   N +    +  + LK   
Sbjct: 97  RVSGN---NKIIFEANDILTKEFPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTG 153
Query: 187 ILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMP 246
            L +TD         D++FKEYVK+  ++  I VE Y D+L    F+ +   D++ +   
Sbjct: 154 TLLITDYCATEKENWDDEFKEYVKQRKYT-LITVEEYADILTACNFKNVVSKDLSDYWNQ 212
Query: 247 LL 248
           LL
Sbjct: 213 LL 214

>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine Methyltransferase From Galdieria Sulphuraria Length = 297

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 5/149 (3%)
Query: 49  VLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSIT----KGQRFIDIGCGFGLSGI 104
           V  G  +H G + E   +D   + S +    + ++ + T    +  + +D+G G+G +  
Sbjct: 39  VWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAXTGVLQRQAKGLDLGAGYGGAAR 98
Query: 105 RLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE 164
            L +  G  +D + I+  Q +   +     GL D +   +G  L +P +++S+D  W  +
Sbjct: 99  FLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 158
Query: 165 SIFHM-NHSAALNEARRVLKSGSILTLTD 192
           +  H  +      E  RVLK   +  +TD
Sbjct: 159 AFLHSPDKLKVFQECARVLKPRGVXAITD 187

>pdb|3VC1|A Chain A, Crystal Structure Of Geranyl Diphosphate C-Methyltransferase From Streptomyces Coelicolor A3(2) In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And S-Adenosyl-L-Homocysteine Length = 312

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 8/171 (4%)
Query: 92  FIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP 151
            +D GCG G S +   +  G RV+G+T+S  Q +   + A+   + D V     + L+ P
Sbjct: 121 LVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP 180
Query: 152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLK-SGSILTLTDL--PLL-SVSKNDNKFKE 207
           FD  +    W  ES  +++     +E  R LK  G  +T+T    P     SK  ++   
Sbjct: 181 FDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINA 240
Query: 208 YVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLT 258
           + + NIHS       Y   +  +      I D+T   +P    + T + +T
Sbjct: 241 HFECNIHSR----REYLRAMADNRLVPHTIVDLTPDTLPYWELRATSSLVT 287

>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From Plasmodium Falciparum In Complex With Phosphocholine Length = 266

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 7/182 (3%)
Query: 70  AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
           + G  + ++ +++   + +  + +DIG G G   + + +  G    GI I        M 
Sbjct: 37  SSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDIC--SNIVNMA 94
Query: 130 TAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM---NHSAALNEARRVLKSGS 186
             +  G  +K+ F   D L   F  ++FD  +  ++I  +   N +    +  + LK   
Sbjct: 95  NERVSGN-NKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTG 153
Query: 187 ILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMP 246
            L +TD         D++FKEYVK+  ++  I VE Y D+L    F+ +   D++ +   
Sbjct: 154 TLLITDYCATEKENWDDEFKEYVKQRKYT-LITVEEYADILTACNFKNVVSKDLSDYWNQ 212
Query: 247 LL 248
           LL
Sbjct: 213 LL 214

>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From Bacteroides Fragilis. Northeast Structural Genomics Consortium Target Bfr250. Length = 267

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%)
Query: 85  SITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
           ++T+     DIGCG G     LA     +V G+       +   + A+  GL ++V  + 
Sbjct: 43  NLTEKSLIADIGCGTGGQTXVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIV 102
Query: 145 GDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193
           G   +LPF N+  D  W   +I+++     LNE R+ LK G  L +++ 
Sbjct: 103 GSXDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSEC 151

>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase From Pyrococcus Horikoshii Ot3 Length = 252

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 90  QRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN 149
           +R +D+ CG G+  + LA+ +G  V G+ + +     A + AK   L  K+ FL GD L 
Sbjct: 43  RRVLDLACGTGIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLE 99
Query: 150 LPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLP 194
           + F N+      FF +I + +        ++    LK G +  +TD P
Sbjct: 100 IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVF-ITDFP 146

>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase, Possible Histamine N-Methyltransferase (Tm1293) From Thermotoga Maritima At 2.20 A Resolution Length = 219

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 20/166 (12%)
Query: 76  LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG 135
           LS +   K  + +G R ++IG G G   + L          I I     E   + A+  G
Sbjct: 36  LSELQAVKCLLPEG-RGVEIGVGTGRFAVPLK---------IKIGVEPSERXAEIARKRG 85
Query: 136 LLDKVNFLHGDALNLPFDNDSFDGGWFFESI-FHMNHSAALNEARRVLKSGSILTLTDL- 193
           +      L G A NLP  ++SFD      +I F  +   AL EA R+LK G  L +  + 
Sbjct: 86  VF----VLKGTAENLPLKDESFDFALXVTTICFVDDPERALKEAYRILKKGGYLIVGIVD 141
Query: 194 --PLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKI 237
               L      NK K    KN  + F   E   DL  K+GFE  K+
Sbjct: 142 RESFLGREYEKNKEKSVFYKN--ARFFSTEELXDLXRKAGFEEFKV 185

>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From Bacteroides Thetaiotaomicron. Northeast Structural Genomics Target Btr309 Length = 257

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 72  GSDKLSRIMIN-KTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKT 130
           GS + +R  ++    +T   +  DIGCG G   + LA     ++ GI +     E   + 
Sbjct: 29  GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNEN 88
Query: 131 AKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTL 190
           A      D+V  + G   NLPF N+  D  W   +I+++     +NE  + LK G  + +
Sbjct: 89  AVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAV 148
Query: 191 TDLPLLSVSK 200
           ++    +  +
Sbjct: 149 SEASWFTSER 158

>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From Bacteroides Thetaiotaomicron Length = 263

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 72  GSDKLSRIMIN-KTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKT 130
           GS + +R  ++    +T   +  DIGCG G   + LA     ++ GI +     E   + 
Sbjct: 35  GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNEN 94
Query: 131 AKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTL 190
           A      D+V  + G   NLPF N+  D  W   +I+++     +NE  + LK G  + +
Sbjct: 95  AVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAV 154
Query: 191 TDLPLLSVSK 200
           ++    +  +
Sbjct: 155 SEASWFTSER 164

>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus Horikoshii Ot3 Length = 227

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 88  KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA 147
           K  + +D+ CG G     L +  G  V G+ IS+     A + AK+      V F+ GDA
Sbjct: 38  KRGKVLDLACGVGGFSF-LLEDYGFEVVGVDISEDXIRKAREYAKSRE--SNVEFIVGDA 94
Query: 148 LNLPFDNDSFDGGWFFESIFH---MNHSAALNEARRVLK-SGS-ILTLTDL 193
             L F++ +FD   F +SI H   +  +    E RRVLK SG  I   TDL
Sbjct: 95  RKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIXYFTDL 145

>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S. Cerevisiae) Length = 376

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 88  KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-- 145
           +G+  +D+G G G+  I  A+A   RV  +  S   Q+ A +  +  GL D+V+ L G  
Sbjct: 83  RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQ-AREVVRFNGLEDRVHVLPGPV 141
Query: 146 DALNLPFDNDSFDGGWFFESIFHMNHSAALNEAR-RVLKSGSILTLTDLPLLSVSKNDNK 204
           + + LP   D+    W    + H +  +++  AR + LK G +L      L  V  +D  
Sbjct: 142 ETVELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPISDQM 201
Query: 205 FK 206
            +
Sbjct: 202 LE 203

>pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1, Apo-Form Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 30/200 (15%)
Query: 66  KDNFAQGSDKLSRI--MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQ 123
           +D+      ++++I   + K  +  G   +D+GCG+G + +R  +     V G+T+SK Q
Sbjct: 40  RDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQ 99
Query: 124 QESAMK-TAKAEGLLDKVNFLHG-DALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRV 181
                +  A +E L  K   L G +  + P D     G   FE   H  + A  + A R+
Sbjct: 100 ANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGA--FEHFGHERYDAFFSLAHRL 157
Query: 182 LKSGSILTLTDLPLLSVSKNDNK-------FKEYVKKNIHSNFILVEHYP---------- 224
           L +  ++ L  +  L   +   +       F  ++K      FI+ E +P          
Sbjct: 158 LPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLK------FIVTEIFPGGRLPSIPMV 211
Query: 225 -DLLNKSGFELIKIDDITSH 243
            +  + +GF + ++  +  H
Sbjct: 212 QECASANGFTVTRVQSLQPH 231

>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent Methyltransferase (Np_349143.1) From Clostridium Acetobutylicum At 2.00 A Resolution Length = 209

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 93  IDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF 152
           +D G G  L  + +    G +  GI IS  Q + A   ++      K+N   GD   LPF
Sbjct: 28  LDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKLPF 85
Query: 153 DNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTL 190
            ++S    + + +IFH   +    A++E +RVLK G +  +
Sbjct: 86  KDESXSFVYSYGTIFHXRKNDVKEAIDEIKRVLKPGGLACI 126

>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From Bacteroides Vulgatus Atcc 8482 Length = 270

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 50/108 (46%)
Query: 85  SITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
           ++T      D+GCG G   + LA+    ++ GI       E   K A+   L ++V  + 
Sbjct: 44  NLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIV 103
Query: 145 GDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192
           G   +L F+ DS D  W   +I+++     L E R  LK G  L +++
Sbjct: 104 GSMDDLSFEKDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYLAVSE 151

>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase From Bacteroides Vulgatus Atcc 8482 Length = 268

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 47/99 (47%)
Query: 94  DIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153
           D+GCG G   + LA+    ++ GI       E   K A+   L ++V  + G   +L F+
Sbjct: 58  DLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLSFE 117
Query: 154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192
            DS D  W   +I+++     L E R  LK G  L +++
Sbjct: 118 KDSLDLIWSEGAIYNIGFERGLKEWRNYLKPGGYLAVSE 156

>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From Antibiotic Biosynthesis Pathway (Yp_324569.1) From Anabaena Variabilis Atcc 29413 At 2.40 A Resolution Length = 261

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 75  KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE 134
           ++   +IN  ++ KG    DIG G G   + LA  +G  V  +  S   ++ A+   + E
Sbjct: 21  RIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVXRQQAVVHPQVE 79
Query: 135 GLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSILTLT 191
                  +  G A NL   + S DG     +I H +H   +  E +R+++ G+I+ LT
Sbjct: 80  -------WFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEXQRIIRDGTIVLLT 130

>pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1 Complexed With Sah And Ctab Length = 287

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 28/185 (15%)
Query: 79  IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK-TAKAEGLL 137
           + + K  +  G   +D+GCG+G +  R  +     V G+T+SK Q     +  A +E L 
Sbjct: 55  LALGKLGLQPGXTLLDVGCGWGATXXRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLR 114
Query: 138 DKVNFLHG-DALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLL 196
            K   L G +  + P D     G   FE   H  + A  + A R+L +  +  L  +  L
Sbjct: 115 SKRVLLAGWEQFDEPVDRIVSIGA--FEHFGHERYDAFFSLAHRLLPADGVXLLHTITGL 172
Query: 197 SVSKNDNK-------FKEYVKKNIHSNFILVEHYP-----------DLLNKSGFELIKID 238
              +   +       F  ++K      FI+ E +P           +  + +GF + ++ 
Sbjct: 173 HPKEIHERGLPXSFTFARFLK------FIVTEIFPGGRLPSIPXVQECASANGFTVTRVQ 226
Query: 239 DITSH 243
            +  H
Sbjct: 227 SLQPH 231

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	298
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	9e-67
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	7e-60
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	4e-48
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	1e-44
3f4k_A	257	Putative methyltransferase; structural genomics, P	1e-40
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	4e-39
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	2e-35
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	8e-34
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	3e-33
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	6e-32
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	8e-32
3ocj_A	305	Putative exported protein; structural genomics, PS	7e-29
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	1e-25
1xxl_A	239	YCGJ protein; structural genomics, protein structu	1e-25
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	1e-22
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	1e-21
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	1e-21
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	3e-21
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	4e-21
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	4e-21
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	9e-21
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	2e-20
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	2e-20
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	1e-19
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	4e-19
3ege_A	261	Putative methyltransferase from antibiotic biosyn	4e-19
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	4e-19
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	5e-19
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	2e-18
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	3e-18
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	4e-17
3i9f_A	170	Putative type 11 methyltransferase; structural gen	7e-17
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	1e-16
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	3e-16
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	3e-16
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	5e-16
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	8e-16
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	9e-16
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	1e-15
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	1e-15
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	1e-15
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	2e-15
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	2e-15
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	3e-15
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	4e-15
3lcc_A	235	Putative methyl chloride transferase; halide methy	2e-14
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	2e-14
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	5e-14
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	1e-13
3cc8_A	230	Putative methyltransferase; structural genomics, j	1e-13
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	3e-13
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	3e-13
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	6e-13
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	2e-12
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	2e-12
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	3e-12
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	7e-12
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	3e-11
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	3e-11
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	6e-11
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	1e-10
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	2e-10
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	7e-10
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	3e-09
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	3e-09
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	3e-09
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	3e-09
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	1e-08
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	3e-08
2p7i_A	250	Hypothetical protein; putative methyltransferase,	3e-08
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	4e-08
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	4e-08
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	6e-08
3lpm_A	259	Putative methyltransferase; structural genomics, p	9e-08
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	9e-08
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	1e-07
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	2e-07
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	2e-07
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	3e-07
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	5e-07
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	5e-07
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	6e-07
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	7e-07
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	8e-07
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	1e-06
1im8_A	244	YECO; methyltransferase, adenosylhomocysteine, str	1e-06
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	2e-06
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	2e-06
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	4e-06
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	1e-05
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	2e-05
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	3e-05
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	9e-05
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	1e-04
3ll7_A	410	Putative methyltransferase; methytransferase, stru	1e-04
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	2e-04
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	2e-04
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	2e-04
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	3e-04
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	3e-04
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	3e-04
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	3e-04
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	4e-04
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	6e-04
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	7e-04
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	7e-04
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	8e-04
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	8e-04
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	9e-04

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score =  208 bits (532), Expect = 9e-67
 Identities = 74/274 (27%), Positives = 135/274 (49%), Gaps = 9/274 (3%)

Query: 29  NKGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITK 88
               + V  +YD        +  G ++H+GYW+++ +  +    +D+L+  MI    +  
Sbjct: 3   APTPEEVRQMYDDFTDPFARIW-GENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRS 61

Query: 89  GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL 148
           G R +D+GCG G   +RLA A+  RV GI+IS+ Q   A   A A GL ++V F + DA+
Sbjct: 62  GDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAM 121

Query: 149 NLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSILTLTD-LPLLSVSKNDNKFK 206
           +LPF++ SFD  W  ES+ HM +   AL E  RVL+ G  + + D + L  V     +  
Sbjct: 122 DLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAV 181

Query: 207 EYVKKNIH-SNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYK 265
           +  +      +   ++ Y   + ++   +    DI++   P L  K  EA    + ++  
Sbjct: 182 DAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDISAQARPSL-VKTAEAFENARSQVEP 240

Query: 266 SIPNPEKSIDNWLYLFKYMSK--NLGYIIVTAKK 297
            +    + +D  +  F+ +++    GY+++ A+K
Sbjct: 241 FM--GAEGLDRMIATFRGLAEVPEAGYVLIGARK 272

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score =  191 bits (488), Expect = 7e-60
 Identities = 47/292 (16%), Positives = 104/292 (35%), Gaps = 16/292 (5%)

Query: 18  KENKDIKENKGNKGKKTVATLYDSPEGQIG--SVLFGGHMHWGYWDESNSKDNFAQGS-- 73
              +          K      YD  +       V  G  +H G + E   +D   + S  
Sbjct: 6   SNGQSQPAATSKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLR 65

Query: 74  --DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTA 131
             + L+  +     + +  + +D+G G+G +   L +  G  +D + I+  Q +   +  
Sbjct: 66  TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYN 125

Query: 132 KAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSILTL 190
              GL D +   +G  L +P +++S+D  W  ++  H  +      E  RVLK   ++ +
Sbjct: 126 NQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAI 185

Query: 191 TDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVP 250
           TD P+     + +  +  + +    +   +  Y  L  + G   ++       ++     
Sbjct: 186 TD-PMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVHHY-S 243

Query: 251 KLTEATLTYKKEIYKSIPNPEKSIDNWL-----YLFKYMSKNLGYIIVTAKK 297
           K+    +    EI        +   N       ++    +  L +  +  +K
Sbjct: 244 KVKAELIKRSSEIASFC--SPEFQANMKRGLEHWIEGGRAGKLTWGGMLFRK 293

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score =  162 bits (411), Expect = 4e-48
 Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 1/197 (0%)

Query: 50  LFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA 109
             G   H  Y  +  ++ +  + S +   +M +          +D GCG G S +   + 
Sbjct: 80  ALGDPEHSEYEKKVIAELHRLE-SAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRR 138

Query: 110 KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM 169
            G RV+G+T+S  Q +   + A+   + D V     + L+ PFD  +    W  ES  ++
Sbjct: 139 FGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYV 198

Query: 170 NHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNK 229
           +     +E  R LK G                 +K+   +  +   N      Y   +  
Sbjct: 199 DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMAD 258

Query: 230 SGFELIKIDDITSHVMP 246
           +      I D+T   +P
Sbjct: 259 NRLVPHTIVDLTPDTLP 275

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score =  151 bits (384), Expect = 1e-44
 Identities = 53/281 (18%), Positives = 97/281 (34%), Gaps = 25/281 (8%)

Query: 23  IKENKGNKGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMIN 82
           I+    +K         D        +    ++  G  + +              + +++
Sbjct: 4   IENLNSDKTFLENNQYTDEGVKVYEFIFGENYISSGGLEAT--------------KKILS 49

Query: 83  KTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNF 142
              + +  + +DIG G G   + + +  G    GI I       A +        +K+ F
Sbjct: 50  DIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERV---SGNNKIIF 106

Query: 143 LHGDALNLPFDNDSFDGGWFFESIFHM---NHSAALNEARRVLKSGSILTLTDLPLLSVS 199
              D L   F  ++FD  +  ++I  +   N +    +  + LK    L +TD       
Sbjct: 107 EANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKE 166

Query: 200 KNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTY 259
             D++FKEYVK+      I VE Y D+L    F+ +   D++ +   LL     +     
Sbjct: 167 NWDDEFKEYVKQRK-YTLITVEEYADILTACNFKNVVSKDLSDYWNQLL-EVEHKYLHEN 224

Query: 260 KKEIYKSIPNP--EKSIDNWLYLFKYMSK-NLGYIIVTAKK 297
           K+E  K           D W    K   +    +    A K
Sbjct: 225 KEEFLKLFSEKKFISLDDGWSRKIKDSKRKMQRWGYFKATK 265

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score =  141 bits (356), Expect = 1e-40
 Identities = 43/230 (18%), Positives = 86/230 (37%), Gaps = 6/230 (2%)

Query: 72  GSDKLSRIMINK-TSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKT 130
           GS + +R  ++    +T   +  DIGCG G   + LA     ++ GI +     E   + 
Sbjct: 29  GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNEN 88

Query: 131 AKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTL 190
           A      D+V  + G   NLPF N+  D  W   +I+++     +NE  + LK G  + +
Sbjct: 89  AVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAV 148

Query: 191 TDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPL-LV 249
           ++    +  +       +   + +    ++    D + ++G+       +  +       
Sbjct: 149 SEASWFTSERPAEIEDFW--MDAYPEISVIPTCIDKMERAGYTPTAHFILPENCWTEHYF 206

Query: 250 PKLTEATLTYKKEIYKSIPNPE--KSIDNWLYLFKYMSKNLGYIIVTAKK 297
               E   T+ KE   +    +  K       L+       GY+    +K
Sbjct: 207 APQDEVRETFMKEHAGNKTAMDFMKGQQYERSLYSKYKDYYGYVFYIGQK 256

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score =  137 bits (346), Expect = 4e-39
 Identities = 48/246 (19%), Positives = 93/246 (37%), Gaps = 10/246 (4%)

Query: 59  YWDESNSKDNFAQGSDKLSRIMINK-TSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGI 117
             D  ++ +    GS +++   ++   ++T+     DIGCG G   + LA     +V G+
Sbjct: 16  ICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGL 75

Query: 118 TISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNE 177
                  +   + A+  GL ++V  + G   +LPF N+  D  W   +I+++     LNE
Sbjct: 76  DFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNE 135

Query: 178 ARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKI 237
            R+ LK G  L +++    +  +       +   + +     + +    ++K+G+  +  
Sbjct: 136 WRKYLKKGGYLAVSECSWFTDERPAEINDFW--MDAYPEIDTIPNQVAKIHKAGYLPVAT 193

Query: 238 DDI-----TSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYMSKNLGYII 292
             +     T H     V         Y     K              L+    +  GY  
Sbjct: 194 FILPENCWTDHYFTPKVAAQKIFLTKYAGN--KIAEEFSMLQSIEEELYHKYKEYYGYTF 251

Query: 293 VTAKKI 298
             AKKI
Sbjct: 252 FIAKKI 257

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score =  127 bits (320), Expect = 2e-35
 Identities = 47/231 (20%), Positives = 94/231 (40%), Gaps = 30/231 (12%)

Query: 59  YWDESNSKDNFAQGSDKLSRIMINKT-------SITKGQRFIDIGCGFGLSGIRLAKAKG 111
            WD S   + + Q S ++       T        + K    +D+GCG G    +L++  G
Sbjct: 19  KWDSSA--EFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT-G 75

Query: 112 CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-N 170
            +  G+ IS    E  ++  K  G    ++F+ GD  +LPF+N+ F+      S+     
Sbjct: 76  YKAVGVDIS----EVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEE 131

Query: 171 HSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKS 230
              ALNE +RVLKS     +  L   +    +N +     K++  N ++   +  L+ + 
Sbjct: 132 PLRALNEIKRVLKSDGYACIAILGPTA-KPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQ 190

Query: 231 GFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLF 281
           GF+++    +    +               +++   +    +    +L++F
Sbjct: 191 GFKVVDGIGVYKRGVN--------------EKMLGQLSTDLQQSLTFLWVF 227

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score =  122 bits (307), Expect = 8e-34
 Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 14/195 (7%)

Query: 58  GYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGI 117
              DE + K  FA     ++  +IN+  IT G   IDIG G G   I LAK     +  +
Sbjct: 15  KNMDEIS-KTLFAPIYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRAL 72

Query: 118 TISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALN 176
             SK   E A+K      L D++  + GD  N+P +++  D      S+F   + + A  
Sbjct: 73  DFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFR 132

Query: 177 EARRVLKSGSILTLTDLPLLS---------VSKNDNKFKEYVKKNIHSNFILVEHYPDLL 227
           E  R+LKSG    +                + + +  +KE+ +KNI      VE + ++L
Sbjct: 133 EIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNIS--QENVERFQNVL 190

Query: 228 NKSGFELIKIDDITS 242
           ++ G    +I     
Sbjct: 191 DEIGISSYEIILGDE 205

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score =  122 bits (307), Expect = 3e-33
 Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 14/204 (6%)

Query: 51  FGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA- 109
              ++H GY +    +   ++ ++ L +++ + T    G + ++ GCG G   + LAK  
Sbjct: 3   LTEYVH-GYSEREALR--LSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNN 59

Query: 110 KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM 169
               +  I IS    E A +  +  G+   V FL  +  +LPF++ SFD  +    + H+
Sbjct: 60  PDAEITSIDISPESLEKARENTEKNGI-KNVKFLQANIFSLPFEDSSFDHIFVCFVLEHL 118

Query: 170 NH-SAALNEARRVLKSGSILTLTD--------LPLLSVSKNDNKFKEYVKKNIHSNFILV 220
                AL   ++VLK G  +T+ +         P    +         V+  +  N ++ 
Sbjct: 119 QSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVG 178

Query: 221 EHYPDLLNKSGFELIKIDDITSHV 244
                LL +SGFE I+++    ++
Sbjct: 179 RQIYPLLQESGFEKIRVEPRMVYI 202

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score =  116 bits (293), Expect = 6e-32
 Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 10/164 (6%)

Query: 86  ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG 145
               +  +D G G  L  + +    G +  GI IS  Q + A   ++      K+N   G
Sbjct: 21  SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF--KLNISKG 78

Query: 146 DALNLPFDNDSFDGGWFFESIFHM---NHSAALNEARRVLKSGSILTLTDLPLLSVS-KN 201
           D   LPF ++S    + + +IFHM   +   A++E +RVLK G +  +  L         
Sbjct: 79  DIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNK 138

Query: 202 DNKFKEYVKKNIHSNFILVEHYPDL--LNK--SGFELIKIDDIT 241
             K  E     +     ++  Y  L   +K     +++  +D  
Sbjct: 139 GEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDRV 182

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score =  117 bits (296), Expect = 8e-32
 Identities = 28/176 (15%), Positives = 67/176 (38%), Gaps = 3/176 (1%)

Query: 70  AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
              +++    +     +  G R +D+G G G      A+  G    GI +S      A +
Sbjct: 18  NPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKR 77

Query: 130 TAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSIL 188
            A+  G+ ++V+F+H DA     + +  D      + +     + A     + LK G I+
Sbjct: 78  RAEELGVSERVHFIHNDAAGYVAN-EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIM 136

Query: 189 TLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHV 244
            + +     +   +   +     +  S+F+ +       +  G++++++       
Sbjct: 137 LIGEPYWRQLPATEEIAQAC-GVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEG 191

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score =  111 bits (278), Expect = 7e-29
 Identities = 25/186 (13%), Positives = 58/186 (31%), Gaps = 23/186 (12%)

Query: 86  ITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL 143
           +  G     + CG+    + L  +   G ++ GI       + A + A    L  ++   
Sbjct: 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLH 175

Query: 144 HGDALNLPFDNDSFDGGWFFESIFHM----NHSAALNEARRVLKSGSILTLTDLPLLSVS 199
             DA  L    + +D         +       +       + LK G  L  + L      
Sbjct: 176 RQDAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPAL 234

Query: 200 KNDNKFKEY--------VKKNIHS--------NFILVEHYPDLLNKSGFELIKIDDITSH 243
             D+ +           +++ + +                   L ++GF  ++ +D  + 
Sbjct: 235 SPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRAR 294

Query: 244 VMPLLV 249
           + P ++
Sbjct: 295 LFPTVI 300

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score =  100 bits (251), Expect = 1e-25
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 10/167 (5%)

Query: 60  WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI 119
           + + NS++  ++  + L  +++    + K  + +D+ CG G     L    G  V G+ I
Sbjct: 13  YTDINSQEYRSRI-ETLEPLLMKY--MKKRGKVLDLACGVGGFSFLLED-YGFEVVGVDI 68

Query: 120 SKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM---NHSAALN 176
           S+     A + AK+      V F+ GDA  L F++ +FD   F +SI H      +    
Sbjct: 69  SEDMIRKAREYAKSRES--NVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFK 126

Query: 177 EARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY 223
           E RRVLK      +    L  +     K    V +    + ++ +  
Sbjct: 127 EVRRVLKPSGKFIMYFTDLRELLPR-LKESLVVGQKYWISKVIPDQE 172

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score =  101 bits (252), Expect = 1e-25
 Identities = 38/172 (22%), Positives = 61/172 (35%), Gaps = 7/172 (4%)

Query: 70  AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
                    +MI         R +DIG G G + +  +        G+  +K   E A  
Sbjct: 5   HHHHSL--GLMIKTAECRAEHRVLDIGAGAGHTALAFSP-YVQECIGVDATKEMVEVASS 61

Query: 130 TAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSIL 188
            A+ +G+ + V F  G A +LPF +DSFD      +  H +    A+ E  RVLK     
Sbjct: 62  FAQEKGV-ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRF 120

Query: 189 TLTDL--PLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID 238
            L D   P   V          ++   H     +  +  + + +      I 
Sbjct: 121 LLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQ 172

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 92.5 bits (230), Expect = 1e-22
 Identities = 48/222 (21%), Positives = 78/222 (35%), Gaps = 41/222 (18%)

Query: 55  MHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRV 114
           M   YW++ + K      S  L  I+ N   + +    +DIGCG G   + LA  KG  V
Sbjct: 1   MPESYWEKVSGK--NIPSSLDLYPIIHN--YLQEDDEILDIGCGSGKISLELAS-KGYSV 55

Query: 115 DGITISKFQQESAMKTAKAEGL----LDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMN 170
            GI I+      A   A++ GL      K  F   +A +L F + SFD       +  + 
Sbjct: 56  TGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVP 115

Query: 171 H----SAALNEARRVLKSGSILTLTDLPLLSVSKNDN----------------KFKEYVK 210
                S  + E  RVLK G+ L L +       +N +                +   ++ 
Sbjct: 116 DPKERSRIIKEVFRVLKPGAYLYLVEF-----GQNWHLKLYRKRYLHDFPITKEEGSFLA 170

Query: 211 KNIHS-------NFILVEHYPDLLNKSGFELIKIDDITSHVM 245
           ++  +       +    +    LL    FE+           
Sbjct: 171 RDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFRVKELETR 212

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 89.1 bits (221), Expect = 1e-21
 Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 20/179 (11%)

Query: 60  WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI 119
            +        A+  D   R++I   +       +D+G G G     LA   G +++G+  
Sbjct: 16  AEALLGTVISAEDPD---RVLIEPWATGVDGVILDVGSGTGRWTGHLASL-GHQIEGLEP 71

Query: 120 SKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALN 176
           +     + +    A      V F HG   +L      + G   + S+ HM       AL 
Sbjct: 72  A-----TRL-VELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALV 125

Query: 177 EARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI 235
             R  ++ G  L ++         +    +        +    +      L  +GF++ 
Sbjct: 126 ALRMAVEDGGGLLMSF-------FSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVT 177

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 91.2 bits (226), Expect = 1e-21
 Identities = 38/213 (17%), Positives = 70/213 (32%), Gaps = 27/213 (12%)

Query: 74  DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAK--AKGCRVDGITISKFQQESAMKTA 131
           D +S ++     ITK    +D GCG+G  G+ L     +G +  GI   +     A +  
Sbjct: 8   DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELF 67

Query: 132 KAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSILTL 190
           +         FL GDA  +  + D +D       + HM      L +    +K G  +  
Sbjct: 68  RLLPY--DSEFLEGDATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIIC 124

Query: 191 TD----------------LPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFEL 234
            +                           K  E   +    +  +    P  L++ G + 
Sbjct: 125 FEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVK- 183

Query: 235 IKIDDITSHVMPLLVPKLTEATLTYKKEIYKSI 267
               +I   V   +    +      K ++Y+S+
Sbjct: 184 ----NIECRVSDKVNFLDSNMHHNDKNDLYQSL 212

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 89.6 bits (222), Expect = 3e-21
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 11/130 (8%)

Query: 60  WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI 119
           +D   +           + +        +   F+++G G G   + L  A+G R   +  
Sbjct: 12  YDRLRA-HPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLI-ARGYRYIALDA 69

Query: 120 SKFQQESAM-KTA--KAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAAL 175
                 +AM +    K  G+  KV  +  DA  +P  ++S  G         + +    L
Sbjct: 70  D-----AAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVL 124

Query: 176 NEARRVLKSG 185
            EA RVLK G
Sbjct: 125 AEAIRVLKPG 134

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 88.3 bits (219), Expect = 4e-21
 Identities = 46/171 (26%), Positives = 70/171 (40%), Gaps = 15/171 (8%)

Query: 69  FAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAM 128
           F          +     +    R ++IG G G    R A     ++ G+  S    E   
Sbjct: 28  FLVHRFAYLSELQAVKCLLPEGRGVEIGVGTG----RFAVPLKIKI-GVEPS----ERMA 78

Query: 129 KTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSI 187
           + A+  G    V  L G A NLP  ++SFD      +I  ++    AL EA R+LK G  
Sbjct: 79  EIARKRG----VFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGY 134

Query: 188 LTLTDLPLLS-VSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKI 237
           L +  +   S + +   K KE      ++ F   E   DL+ K+GFE  K+
Sbjct: 135 LIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 185

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 87.5 bits (217), Expect = 4e-21
 Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 12/134 (8%)

Query: 56  HWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVD 115
           H   + +   ++  A G+D      +      +G + +D GCG G  G  L+K  G  V 
Sbjct: 15  HSENYAQ-RWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQ-GHDVL 72

Query: 116 GITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM----NH 171
           G  +        +    A+    +  ++ GD          FD      ++         
Sbjct: 73  GTDLD-----PIL-IDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGR 126

Query: 172 SAALNEARRVLKSG 185
             AL    R L + 
Sbjct: 127 EPALANIHRALGAD 140

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 88.3 bits (219), Expect = 9e-21
 Identities = 33/182 (18%), Positives = 69/182 (37%), Gaps = 8/182 (4%)

Query: 80  MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK 139
           ++   ++   +  +D+  G G      A     +V    +++   + A    +  G   +
Sbjct: 29  LMQIAALKGNEEVLDVATGGGHVANAFAP-FVKKVVAFDLTEDILKVARAFIEGNGH-QQ 86

Query: 140 VNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSILTLTDLPLLSV 198
           V ++ GDA  +PF ++ F       +  H  + ++ ++EA RVLK G  L L D      
Sbjct: 87  VEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN 146

Query: 199 SKNDNKFKEYVKKNIHS--NFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEAT 256
              D  +    K+  +S         +  +L ++GFEL +   +       +     +  
Sbjct: 147 DAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEE---LHCFHKTFIFEDWCDRM 203

Query: 257 LT 258
             
Sbjct: 204 NV 205

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 86.5 bits (214), Expect = 2e-20
 Identities = 31/199 (15%), Positives = 62/199 (31%), Gaps = 28/199 (14%)

Query: 60  WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI 119
           +D +      +     L R+     +       +++  G G     L+     RV  +  
Sbjct: 22  YDATFVPYMDSAAPAALERLR----AGNIRGDVLELASGTGYWTRHLS-GLADRVTALDG 76

Query: 120 SKFQQESAM-KTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AAL 175
           S     + M   A   GL D V F   D  +   D   +D  +F   + H+      A  
Sbjct: 77  S-----AEMIAEAGRHGL-DNVEFRQQDLFDWTPDR-QWDAVFFAHWLAHVPDDRFEAFW 129

Query: 176 NEARRVLKSGSILTLTDL-----PLLSVSKNDNKFKEYVKKNIHSNFILVEHYPD----- 225
              R  +  G ++   D+      L     ++ +           +F +V+ +       
Sbjct: 130 ESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELT 189

Query: 226 -LLNKSGFELIKIDDITSH 243
             L   G+    +D++   
Sbjct: 190 ERLTALGWS-CSVDEVHPG 207

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 86.4 bits (214), Expect = 2e-20
 Identities = 30/190 (15%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 60  WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI 119
           W ++              + ++      + +R +D+GCG G     LA  +G    G+  
Sbjct: 24  WIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALA-DRGIEAVGVDG 82

Query: 120 SKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEAR 179
            +   ++A   A   G +   ++       +P     +D      ++ H +    L+  R
Sbjct: 83  DRTLVDAAR--AAGAGEVHLASYAQLAEAKVPVG-KDYDLICANFALLHQDIIELLSAMR 139

Query: 180 RVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFIL-----------VEHYPDLLN 228
            +L  G  L +  L   SV+  D  +++  ++   + F             +  + + L+
Sbjct: 140 TLLVPGGALVIQTLHPWSVA--DGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALD 197

Query: 229 KSGFELIKID 238
            +G  L+ + 
Sbjct: 198 MAGLRLVSLQ 207

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 85.1 bits (210), Expect = 1e-19
 Identities = 37/237 (15%), Positives = 63/237 (26%), Gaps = 30/237 (12%)

Query: 23  IKENKGNKGKKTVATLYDSPEG----QIGSVLFGGHMHW-----GYWDESNSKDN----- 68
              N    G+ T    Y S +     ++   L+     W      YW    +  +     
Sbjct: 11  SSRNLPISGRDTNGKTYRSTDEMWKAELTGDLYDPEKGWYGKALEYWRTVPATVSGVLGG 70

Query: 69  FAQGSD---KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQE 125
                D   + SR  I         R +D G G G     L        D +   K   E
Sbjct: 71  MDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLE 130

Query: 126 SAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH---SAALNEARRVL 182
            A +      +     F+           +++D      +  ++            ++ L
Sbjct: 131 EAKRELAGMPV---GKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQAL 187

Query: 183 KSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDD 239
                +   +    S        KE       S      HY  L N+SG  ++K   
Sbjct: 188 TPNGYIFFKE--NCSTGDRFLVDKED-----SSLTRSDIHYKRLFNESGVRVVKEAF 237

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 83.6 bits (206), Expect = 4e-19
 Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 25/198 (12%)

Query: 58  GYWDE-SNSKDNFAQGSDKLSRIMI------------NKTSITKGQRFIDIGCGFGLSGI 104
            YW +   + D    G   +S I I               + T     +D G G G    
Sbjct: 36  TYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITK 95

Query: 105 RLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE 164
           RL       VD + I++     A      EG     N+      +   + DS+D  W   
Sbjct: 96  RLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQW 154

Query: 165 SIFHMNH---SAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVE 221
            I H+     +  L   +  L+   I+ + D    ++++      +       S    ++
Sbjct: 155 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD----NMAQEGVILDDVD----SSVCRDLD 206

Query: 222 HYPDLLNKSGFELIKIDD 239
               ++  +G  L+  + 
Sbjct: 207 VVRRIICSAGLSLLAEER 224

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 83.8 bits (207), Expect = 4e-19
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 9/113 (7%)

Query: 80  MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK 139
           +IN  ++ KG    DIG G G   + LA  +G  V  +  S       M   +A      
Sbjct: 26  IINLLNLPKGSVIADIGAGTGGYSVALA-NQGLFVYAVEPS-----IVM-RQQAVVHPQ- 77

Query: 140 VNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSILTLT 191
           V +  G A NL   + S DG     +I H +H   +  E +R+++ G+I+ LT
Sbjct: 78  VEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLT 130

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 83.3 bits (206), Expect = 4e-19
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 88  KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA 147
            G R +D+GCGFG       +     V G+ +S    E  +  A+A G    + +   D 
Sbjct: 43  GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLS----EKMLARARAAGPDTGITYERADL 98

Query: 148 LNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSILTLTDL 193
             L    DSFD  +   ++ ++   +       + L  G     +  
Sbjct: 99  DKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE 145

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 82.6 bits (204), Expect = 5e-19
 Identities = 29/191 (15%), Positives = 56/191 (29%), Gaps = 19/191 (9%)

Query: 59  YWDESN-SKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGI 117
            +D     +D   +        ++           ++ G G G    +L    G  V GI
Sbjct: 15  TYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLL-AGRTVYGI 73

Query: 118 TISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH---SAA 174
             S          AK E L  + +   GD L+      S D      +  H+     + A
Sbjct: 74  EPS----REMRMIAK-EKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDEKNVA 127

Query: 175 LNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSN--------FILVEHYPDL 226
           + +  ++L  G  +   D         D   +   ++  H          +  +     +
Sbjct: 128 IAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTI 187

Query: 227 LNKSGFELIKI 237
              +GF +   
Sbjct: 188 FENNGFHVTFT 198

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 81.0 bits (200), Expect = 2e-18
 Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 12/139 (8%)

Query: 60  WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI 119
           ++                     K  +  G+  +++G G G    RL      +  G+  
Sbjct: 10  YEAWY--GTPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRLPYP---QKVGVEP 64

Query: 120 SKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEA 178
           S+     AM  A       +  ++      LPF  +SFD    F ++  +      L EA
Sbjct: 65  SE-----AM-LAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEA 118

Query: 179 RRVLKSGSILTLTDLPLLS 197
           RRVL+ G  L +  L  LS
Sbjct: 119 RRVLRPGGALVVGVLEALS 137

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 81.1 bits (200), Expect = 3e-18
 Identities = 28/175 (16%), Positives = 62/175 (35%), Gaps = 30/175 (17%)

Query: 88  KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAM-KTAKAEGLLDKVNFLHGD 146
             +  +D+GCGFG   I  A+    +V GI +S       M   AK +     V +    
Sbjct: 44  NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLS-----ERMLTEAKRKTTSPVVCYEQKA 98

Query: 147 ALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSILTLTDL-PLLSVSKNDNK 204
             ++  + D+++      ++ ++        +    LKS      +   P+ +     + 
Sbjct: 99  IEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDW 158

Query: 205 FKE------------YVKKNIHSNFILVEHYP----------DLLNKSGFELIKI 237
           + +            Y  +++ ++  L E               L K+GF++  +
Sbjct: 159 YTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSV 213

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 78.0 bits (192), Expect = 4e-17
 Identities = 42/242 (17%), Positives = 82/242 (33%), Gaps = 48/242 (19%)

Query: 35  VATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFID 94
           +A  YD                W  +               +   +     +    R +D
Sbjct: 24  IARAYD---------SMYETPKWKLYHR------------LIGSFLEEY--LKNPCRVLD 60

Query: 95  IGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN 154
           +G G G   + L + +G  V  +  S    +  ++ A+ +G     N +   A +LPF +
Sbjct: 61  LGGGTGKWSLFLQE-RGFEVVLVDPS----KEMLEVAREKG---VKNVVEAKAEDLPFPS 112

Query: 155 DSFDGGW-FFESIFHMNH-SAALNEARRVLKSGSIL---------TLTDLPLLSVSKNDN 203
            +F+      + + ++ +   A +E RRVL    +L          L  +          
Sbjct: 113 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQIT 172

Query: 204 KFKEYVKKNIHSNFILVEHYP----DLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTY 259
           +F +    ++ +       Y     DL +  GFE + I  I   VM     +++E   T 
Sbjct: 173 RFLKTQTTSVGTTLFSFNSYAFKPEDLDSLEGFETVDIRGIG--VMEYPDERISEREETI 230

Query: 260 KK 261
            +
Sbjct: 231 FR 232

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 75.5 bits (186), Expect = 7e-17
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 11/114 (9%)

Query: 80  MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK 139
            +      K    +D GCG G     L +    ++  I I+      A+K  K      K
Sbjct: 9   YLPNIFEGKKGVIVDYGCGNGFYCKYLLE-FATKLYCIDIN----VIALKEVKE-----K 58

Query: 140 VNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSILTLTD 192
            + +   +      ++S D   F  S   M +    ++E +R+LK    + + D
Sbjct: 59  FDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIID 112

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 76.0 bits (187), Expect = 1e-16
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 8/135 (5%)

Query: 59  YWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGIT 118
             DE+   D +     +    ++    + K  + +D+GCG G + + LA   G  VD   
Sbjct: 5   IRDENYFTDKYELT--RTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAA-NGYDVDAWD 61

Query: 119 ISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AAL 175
            +     +  +    E  LD ++    D  NL FD   +D       +  +        +
Sbjct: 62  KNAMSIANVERIKSIEN-LDNLHTRVVDLNNLTFDR-QYDFILSTVVLMFLEAKTIPGLI 119

Query: 176 NEARRVLKSGSILTL 190
              +R  K G    +
Sbjct: 120 ANMQRCTKPGGYNLI 134

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 75.9 bits (187), Expect = 3e-16
 Identities = 36/203 (17%), Positives = 69/203 (33%), Gaps = 27/203 (13%)

Query: 59  YWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGIT 118
           +WD +    +      +    ++   +   G+  +D+GCG G    ++A++ G  V G  
Sbjct: 29  FWD-ATLYQDKHSFVWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQS-GAEVLGTD 86

Query: 119 ISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNE 177
            +     + M   KA      ++F   DA N   D    D  +    +  +    AA+  
Sbjct: 87  NA-----ATM-IEKARQNYPHLHFDVADARNFRVDK-PLDAVFSNAMLHWVKEPEAAIAS 139

Query: 178 ARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHS------------NFILVEHYPD 225
             + LKSG               N     E +   + +             F  +  Y +
Sbjct: 140 IHQALKSGGRFVAEFGG----KGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVN 195

Query: 226 LLNKSGFELIKIDDITSHVMPLL 248
           +L K GF++     + +    L 
Sbjct: 196 ILEKQGFDVTYA-ALFNRPTTLA 217

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 76.4 bits (187), Expect = 3e-16
 Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 6/117 (5%)

Query: 75  KLSRIMINKTSITKGQRFIDIGCG-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA 133
           +L +         +G+R + IG G   L+GI L+   G RV+ + I     E + K  + 
Sbjct: 109 ELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEG 168

Query: 134 EGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTL 190
            G +D VN + GD   +  D   FD      +              R + + + +  
Sbjct: 169 LG-VDGVNVITGDETVI--DGLEFDV--LMVAALAEPKRRVFRNIHRYVDTETRIIY 220

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 75.1 bits (184), Expect = 5e-16
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 13/113 (11%)

Query: 89  GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL 148
               ID  CG G     L++    RV G+ +S    +SA++ A  E     +++   D L
Sbjct: 57  ELPLIDFACGNGTQTKFLSQF-FPRVIGLDVS----KSALEIAAKENTAANISYRLLDGL 111

Query: 149 NL----PFDNDSFDGGWFFESIFH----MNHSAALNEARRVLKSGSILTLTDL 193
                    ++  D   +  + FH              R +L     + L +L
Sbjct: 112 VPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287

 Score = 74.9 bits (185), Expect = 8e-16
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 70  AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
           AQ   K+    + K  +  G   +D+GCG+G + +R  +     V G+T+SK Q     +
Sbjct: 48  AQ-IAKIDLA-LGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQ 105

Query: 130 TAKAEGLLDKVNFLHGD--ALNLPFD 153
                  L     L       + P D
Sbjct: 106 LVANSENLRSKRVLLAGWEQFDEPVD 131

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 73.6 bits (181), Expect = 9e-16
 Identities = 27/164 (16%), Positives = 61/164 (37%), Gaps = 14/164 (8%)

Query: 80  MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC--RVDGITISKFQQESAMKTAKAEGLL 137
           ++ +  + +G   +D+G G G     L+K  G   +V  I + +     A +     GL 
Sbjct: 29  VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL- 87

Query: 138 DKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSILTLTDLPLL 196
             V  L  +   +P  +++ D  +   +   ++     L E +RV K  + L + D    
Sbjct: 88  KNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIID---- 143

Query: 197 SVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDI 240
              K +       ++              +L  +G  + ++ ++
Sbjct: 144 -WKKEERDKGPPPEE-----VYSEWEVGLILEDAGIRVGRVVEV 181

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 73.4 bits (180), Expect = 1e-15
 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 5/130 (3%)

Query: 60  WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI 119
           WDE  S+  +  G  + +  +++  +     + + +  G G +   LA   G  V  +  
Sbjct: 2   WDERFSQSEYVYG-TEPNDFLVSVANQIPQGKILCLAEGEGRNACFLAS-LGYEVTAVDQ 59

Query: 120 SKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDG-GWFFESIFHMNHSAALNEA 178
           S      A + A+ +G+  K+  +  +  +     D+++G    F  +          + 
Sbjct: 60  SSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKV 117

Query: 179 RRVLKSGSIL 188
            + LK G + 
Sbjct: 118 YQGLKPGGVF 127

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 74.7 bits (183), Expect = 1e-15
 Identities = 27/215 (12%), Positives = 61/215 (28%), Gaps = 35/215 (16%)

Query: 51  FGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK 110
            G   +        +    A         +     +  G++ ++IGCG G     LA   
Sbjct: 15  LGPTANARTIQRRQTAHRLA---------IAEAWQVKPGEKILEIGCGQGDLSAVLADQV 65

Query: 111 G--CRVDGITISKFQQESAMKTAKA------EGLLDKVNFLHGDALN---LPFDNDSFDG 159
           G    V GI I+     + +   +A        L D++       L+    P  +  FD 
Sbjct: 66  GSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDR 125

Query: 160 GWFFESIFHMNHSA-ALNEARRVLKSGSILTLTD----------LPLLSVSKNDNKFKEY 208
                S+++   +       + +      + + +          +  L  +         
Sbjct: 126 VVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAI 185

Query: 209 VKK---NIHSNFILVEHYPDLLNKSGFELIKIDDI 240
                 NI +  I  +    + + + +       +
Sbjct: 186 APSDVANIRT-LITPDTLAQIAHDNTWTYTAGTIV 219

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Length = 318

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 70  AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
           AQ   K+    ++K  +  G   +DIGCG+G +  R  +     V G+T+SK Q     +
Sbjct: 74  AQ-YAKVDLN-LDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQ 131

Query: 130 TAKAEGLLDKVNFLHGD--ALNLPFD 153
              +         L         P D
Sbjct: 132 VLASIDTNRSRQVLLQGWEDFAEPVD 157

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Length = 302

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 70  AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMK 129
           AQ   K     ++K ++  G   +DIGCG+G +           V G+T+S+ Q      
Sbjct: 56  AQ-YAKRKLA-LDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKA 113

Query: 130 TAKAEGLLDKVNFLHGD--ALNLPFD 153
                    +           + P D
Sbjct: 114 MFDEVDSPRRKEVRIQGWEEFDEPVD 139

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 74.7 bits (183), Expect = 2e-15
 Identities = 33/175 (18%), Positives = 57/175 (32%), Gaps = 16/175 (9%)

Query: 81  INKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQ-------QESAMKTA 131
           +      +G   +D+GCG G      +K  G   +V G+ +   Q        E   +  
Sbjct: 76  LPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKF 135

Query: 132 KAEGLLDKVNFLHGDALNL------PFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKS 184
                   V FL G   NL         + S D            N  A   E  RVL+ 
Sbjct: 136 FGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRD 195

Query: 185 GSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDD 239
           G  L  +D+          +    +        + +E +  L+ ++GF  +++  
Sbjct: 196 GGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVS 250

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 72.9 bits (179), Expect = 3e-15
 Identities = 32/187 (17%), Positives = 59/187 (31%), Gaps = 14/187 (7%)

Query: 60  WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGIT 118
           +DE   K       D     +   +  T+    +D+G G GL    L +         + 
Sbjct: 17  YDEQRRKFIPCF-DDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVD 75

Query: 119 ISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDG---GWFFESIFHMNHSAAL 175
           +S+   E A    +      KV ++  D     F+   +D          +   +     
Sbjct: 76  MSEKMLEIAKNRFRGN---LKVKYIEADYSKYDFEE-KYDMVVSALSIHHLEDEDKKELY 131

Query: 176 NEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI 235
             +  +LK   I    DL        +  F E + K I   ++      +    +G+E  
Sbjct: 132 KRSYSILKESGIFINADL-----VHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERS 186

Query: 236 KIDDITS 242
           K+D    
Sbjct: 187 KLDKDIE 193

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 72.5 bits (178), Expect = 4e-15
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 14/134 (10%)

Query: 59  YWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGIT 118
            +DE      + +    +         +  G+R  DIGCG G + + LA      V G+ 
Sbjct: 10  VYDELMQDVPYPEWVAWVLEQ------VEPGKRIADIGCGTGTATLLLAD--HYEVTGVD 61

Query: 119 ISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM----NHSAA 174
           +S+   E A + A        V+F   D   L             +S+ ++    +    
Sbjct: 62  LSEEMLEIAQEKAMETNR--HVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQT 119

Query: 175 LNEARRVLKSGSIL 188
            + A R+L  G  L
Sbjct: 120 FDSAARLLTDGGKL 133

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 70.4 bits (172), Expect = 2e-14
 Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 39/220 (17%)

Query: 42  PEGQIGSVLFGGHMHWGYWDE--SNSKDNFAQG--SDKLSRIMINKTSITKGQRFIDIGC 97
           P  +  +      +  G W++        + QG  +  +  + ++ +S+  G R +  GC
Sbjct: 18  PTPEEVATFLHKTVEEGGWEKCWEEEITPWDQGRATPLIVHL-VDTSSLPLG-RALVPGC 75

Query: 98  GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSF 157
           G G   + +A +    V G+ IS+     A +T  +    +  +F+  D        + F
Sbjct: 76  GGGHDVVAMA-SPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT-ELF 133

Query: 158 DGGW---FFESIFHMNHSAALNEARRVLKSGSILTLTDLPL--------LSVSKNDNKFK 206
           D  +   FF +I      A       +LK    L     P+          V        
Sbjct: 134 DLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDV------ 187

Query: 207 EYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMP 246
                           + ++L   GF+ + +++    +  
Sbjct: 188 --------------STFEEVLVPIGFKAVSVEENPHAIPT 213

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 71.2 bits (174), Expect = 2e-14
 Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 9/118 (7%)

Query: 80  MINKTSITKGQRFIDIGCGFGLSGIRLAK--AKGCRVDGITISKFQQESAMKTAKAEGL- 136
           MI++    + +  +D+GCG G + +++A+      ++ G  +S    ++A    +     
Sbjct: 28  MIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT 87

Query: 137 LDKVNFLHGDALNLPF------DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSIL 188
              V+F    + +  F      D    D     E     +       A   L+    +
Sbjct: 88  YKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTI 145

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 68.7 bits (168), Expect = 5e-14
 Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 14/136 (10%)

Query: 59  YWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGIT 118
           ++   N+   +A+   + + +      +  G + +++GCG G     +  A G  VD   
Sbjct: 16  FYRG-NATA-YAERQPRSATLTKFLGELPAGAKILELGCGAGYQAEAML-AAGFDVDATD 72

Query: 119 ISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AAL 175
            S          A                  L    D++D  W    + H+        L
Sbjct: 73  GS----PELAAEASRRL---GRPVRTMLFHQLDAI-DAYDAVWAHACLLHVPRDELADVL 124

Query: 176 NEARRVLKSGSILTLT 191
               R LK G +   +
Sbjct: 125 KLIWRALKPGGLFYAS 140

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 68.3 bits (167), Expect = 1e-13
 Identities = 36/183 (19%), Positives = 68/183 (37%), Gaps = 11/183 (6%)

Query: 59  YWDE--SNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDG 116
           Y+D       +      D +  I   + +  + +R +D+ CG G+  + LA+ +G  V G
Sbjct: 11  YYDTIYRRRIERVKAEIDFVEEI-FKEDAKREVRRVLDLACGTGIPTLELAE-RGYEVVG 68

Query: 117 ITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGW-FFESIFHMNHS--- 172
           + + +     A + AK   L  K+ FL GD L + F  + FD    FF +I + +     
Sbjct: 69  LDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLR 125

Query: 173 AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGF 232
              ++    LK G +            ++        K       +        + K  F
Sbjct: 126 KLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRF 185

Query: 233 ELI 235
           + +
Sbjct: 186 KRL 188

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 36/206 (17%), Positives = 76/206 (36%), Gaps = 16/206 (7%)

Query: 88  KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA 147
           + +  +DIGC  G  G  + +  G RV GI         A + AK +   D V     + 
Sbjct: 32  EWKEVLDIGCSSGALGAAIKE-NGTRVSGIEAF----PEAAEQAKEKL--DHVVLGDIET 84

Query: 148 LNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFK 206
           +++P++ + FD   F + + H+ +  A + + +  +K   ++  +   +  +S       
Sbjct: 85  MDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLA 144

Query: 207 -EYVKKNI------HSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTY 259
             +           H  F        +  K+G+ + K+D +      +  P + E     
Sbjct: 145 GNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRVYVDH-KMYEPLIEELYGIC 203

Query: 260 KKEIYKSIPNPEKSIDNWLYLFKYMS 285
           KK    S    E  +  ++   +   
Sbjct: 204 KKYRLGSGFMAETVVFQYIIEAEKSQ 229

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 66.6 bits (162), Expect = 3e-13
 Identities = 35/168 (20%), Positives = 54/168 (32%), Gaps = 40/168 (23%)

Query: 76  LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG 135
           + RI  +           D GCG      RLA +    V    ++               
Sbjct: 55  VDRIARDLRQRPASLVVADFGCGDC----RLASSIRNPVHCFDLAS-------------- 96

Query: 136 LLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPL 195
                     D   +P +++S D   F  S+   N    L EA RVLK G +L + +   
Sbjct: 97  --LDPRVTVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAE--- 151

Query: 196 LSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSH 243
                            + S F  V  +   + K GF+++  D   SH
Sbjct: 152 -----------------VSSRFEDVRTFLRAVTKLGFKIVSKDLTNSH 182

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 66.6 bits (162), Expect = 3e-13
 Identities = 16/103 (15%), Positives = 27/103 (26%), Gaps = 16/103 (15%)

Query: 86  ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG 145
           +T   R ++ GCG G    R       R      S       +K A+A       +    
Sbjct: 46  LTPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFS----PELLKLARANA--PHADVYEW 98

Query: 146 DAL-NLPF-DNDSFDGGWFFESIF-HMNHSAALNEARRVLKSG 185
           +    LP      F        I      ++ +     +    
Sbjct: 99  NGKGELPAGLGAPFGL------IVSRRGPTSVILRLPELAAPD 135

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 66.9 bits (163), Expect = 6e-13
 Identities = 17/142 (11%), Positives = 45/142 (31%), Gaps = 7/142 (4%)

Query: 54  HMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR 113
               G++ +     +    +  +   +++   I    + +D+GCG G + + L+   G  
Sbjct: 86  ECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSL-LGYD 144

Query: 114 VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS- 172
           V     ++       +T + E L   ++    D         ++D          +N   
Sbjct: 145 VTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQE-NYDFIVSTVVFMFLNRER 201

Query: 173 --AALNEARRVLKSGSILTLTD 192
             + +   +     G    +  
Sbjct: 202 VPSIIKNMKEHTNVGGYNLIVA 223

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 64.3 bits (156), Expect = 2e-12
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 11/106 (10%)

Query: 59  YWDE--SNSKDNFA----QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC 112
           YWD+    + D+              ++  +  +    R + +GCG       L      
Sbjct: 9   YWDQRYQGAADSAPYDWFGDFSSFRALL--EPELRPEDRILVLGCGNSALSYELFLGGFP 66

Query: 113 RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD 158
            V  +  S     +            ++ +   D   L F + SFD
Sbjct: 67  NVTSVDYSSVVVAAMQACYAHVP---QLRWETMDVRKLDFPSASFD 109

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 35/210 (16%), Positives = 70/210 (33%), Gaps = 25/210 (11%)

Query: 77  SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL 136
           +R+          +R +DIGCG G   + L K +G    G+ I++   +           
Sbjct: 30  ARLRRYIPYFKGCRRVLDIGCGRG-EFLELCKEEGIESIGVDINEDMIKFCEG------- 81

Query: 137 LDKVNFLHGDALN--LPFDNDSFDGGWFFESIFHMNH---SAALNEARRVLKSGSILTLT 191
             K N +  DA+       +   DG      + H++       L+     +K  S +   
Sbjct: 82  --KFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYI--- 136

Query: 192 DLPLLSV--SKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLV 249
              ++      +      +     H   +  E    +L   GF  +KI+         L 
Sbjct: 137 ---VIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIE--FFEECEELT 191

Query: 250 PKLTEATLTYKKEIYKSIPNPEKSIDNWLY 279
                 + T  +E+ + I    + ++  L+
Sbjct: 192 KLAKIDSNTVSEEVIRVINENIEKLNRILF 221

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 64.6 bits (157), Expect = 3e-12
 Identities = 36/161 (22%), Positives = 58/161 (36%), Gaps = 24/161 (14%)

Query: 88  KGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD 146
           K    +DIGCG G      A A       G+ +SK   ++A K          V F    
Sbjct: 85  KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQ------VTFCVAS 138

Query: 147 ALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFK 206
           +  LPF + S D      +           E  RV+K G         +++ +       
Sbjct: 139 SHRLPFSDTSMDAIIRIYAP------CKAEELARVVKPGGW-------VITATPGPRHLM 185

Query: 207 EYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPL 247
           E +K  I++   L   + + L   GF L +  ++  + M L
Sbjct: 186 E-LKGLIYNEVHLHAPHAEQL--EGFTLQQSAELC-YPMRL 222

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 63.3 bits (154), Expect = 7e-12
 Identities = 32/141 (22%), Positives = 47/141 (33%), Gaps = 19/141 (13%)

Query: 53  GHMHW---GYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA 109
           GHM W    Y       +      D L+++      + +     D+GCG G S   L   
Sbjct: 2   GHMAWSAQQY--LKFEDERTRPARDLLAQV-----PLERVLNGYDLGCGPGNSTELLTDR 54

Query: 110 KGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFH 168
            G   + GI          M   KA   L   NF   D           D  +       
Sbjct: 55  YGVNVITGIDSD-----DDM-LEKAADRLPNTNFGKADLATWKPA-QKADLLYANAVFQW 107

Query: 169 M-NHSAALNEARRVLKSGSIL 188
           + +H A L++    L+SG +L
Sbjct: 108 VPDHLAVLSQLMDQLESGGVL 128

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 61.8 bits (150), Expect = 3e-11
 Identities = 22/162 (13%), Positives = 40/162 (24%), Gaps = 14/162 (8%)

Query: 33  KTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRF 92
                L    E  +    +       Y D     D  ++  +  +R              
Sbjct: 33  HADVLLASVGERGVLCDFYDEGAADTYRDLIQDADGTSEAREFATRTGP------VSGPV 86

Query: 93  IDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL--LDKVNFLHGDALNL 150
           +++  G G          G  V  + +S     +  K          D+   + GD    
Sbjct: 87  LELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF 145

Query: 151 PFDNDSFDGGW-FFESIFHMNHS---AALNEARRVLKSGSIL 188
             D   F        SI  ++ +         R  L+ G   
Sbjct: 146 ALDK-RFGTVVISSGSINELDEADRRGLYASVREHLEPGGKF 186

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 26/171 (15%), Positives = 49/171 (28%), Gaps = 15/171 (8%)

Query: 59  YWDESNSKD-NFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGI 117
            +D+    D ++ + SD +        +      ++D+ CG G     L   K      +
Sbjct: 9   IYDKLIRADVDYKKWSDFIIEKC--VENNLVFDDYLDLACGTGNLTENLCP-KFKNTWAV 65

Query: 118 TISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGW-FFESIFHM----NHS 172
            +S+     A    +++GL  K      D  NL  +   FD      +S  ++    +  
Sbjct: 66  DLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINR-KFDLITCCLDSTNYIIDSDDLK 122

Query: 173 AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY 223
                    LK G +       + S  K                       
Sbjct: 123 KYFKAVSNHLKEGGVFIFD---INSYYKLSQVLGNNDFNYDDDEVFYYWEN 170

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 60.2 bits (146), Expect = 6e-11
 Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 22/184 (11%)

Query: 53  GHMHW----GYWDE--SNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRL 106
           GHM+       +D        ++A  +  ++ ++  ++   +    +D+ CG G      
Sbjct: 1   GHMYEVDHADVYDLFYLGRGKDYAAEASDIADLV--RSRTPEASSLLDVACGTGTHLEHF 58

Query: 107 AKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGW-FFES 165
            K +     G+ +S       M    A   L       GD  +       F      F S
Sbjct: 59  TK-EFGDTAGLELS-----EDM-LTHARKRLPDATLHQGDMRDFRLGR-KFSAVVSMFSS 110

Query: 166 IFHMNH----SAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVE 221
           + ++       AA+      L+ G ++ + +      +  D      V +        V 
Sbjct: 111 VGYLKTTEELGAAVASFAEHLEPGGVVVV-EPWWFPETFADGWVSADVVRRDGRTVARVS 169

Query: 222 HYPD 225
           H   
Sbjct: 170 HSVR 173

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 59.2 bits (143), Expect = 1e-10
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 8/110 (7%)

Query: 87  TKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDK----VN 141
           +  +R ID+GCG G     L K     ++ G+ +S    E A +      L       + 
Sbjct: 28  SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQ 87

Query: 142 FLHGDALNLPFDNDSFDGGWFFESIFHMNH---SAALNEARRVLKSGSIL 188
            + G           +D     E I H++     A         +   ++
Sbjct: 88  LIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVI 137

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 58.4 bits (141), Expect = 2e-10
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 88  KGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLD----KVNF 142
             ++ ID+GCG G     L K K   ++ G+ +S    E A    K + L +    +++ 
Sbjct: 29  NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88

Query: 143 LHGDALNLPFDNDSFDGGWFFESIFHMNH---SAALNEARRVLKSGSIL 188
                +        +D     E I H++     A         +  +++
Sbjct: 89  FQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVI 137

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 57.8 bits (139), Expect = 7e-10
 Identities = 26/207 (12%), Positives = 64/207 (30%), Gaps = 23/207 (11%)

Query: 59  YWDESNSKDNFAQG-SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-------K 110
           + + S       +    KL  I+          + + IG G G   +++           
Sbjct: 22  FLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGV 81

Query: 111 GCRVDGITISKFQQESAMKTAKAEGLLDKVNF--------LHGDALNLPFDNDSFDGGWF 162
               + +  S  Q     +       L+ V F         +   +    +   +D    
Sbjct: 82  CINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHM 141

Query: 163 FESIFHM-NHSAALNEARRVLKSGSILTLTDLPLLSV-SKNDNKFKEYVKKNIHSNFILV 220
            + ++++ +  A L     +L + + + +  +   S   K   K+     ++    +I  
Sbjct: 142 IQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITS 201

Query: 221 EHYPDLLNKSGFELIKID-----DITS 242
           +    +L+  G +    D     DI+ 
Sbjct: 202 DDLTQMLDNLGLKYECYDLLSTMDISD 228

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 55.9 bits (134), Expect = 3e-09
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 9/113 (7%)

Query: 79  IMINKTSITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGL 136
            +I +  +  G   +++G G G     +  A      +  +   +   + AM        
Sbjct: 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD 160

Query: 137 LDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSIL 188
           +  V     D  +   D   +D       I  + +    + +   ++K GS+ 
Sbjct: 161 IGNVRTSRSDIADFISD-QMYDAV-----IADIPDPWNHVQKIASMMKPGSVA 207

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 54.9 bits (132), Expect = 3e-09
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 13/122 (10%)

Query: 83  KTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKV 140
           K  + +G   +D  CG G     LA   G   RV G  I      +  K      L+D+V
Sbjct: 17  KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRV 76

Query: 141 NFLHGDA------LNLPFDNDSFDGGWFFESIFHMNHS-----AALNEARRVLKSGSILT 189
             +          ++ P     F+ G+       ++        AL++A  +L +G I+T
Sbjct: 77  TLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIIT 136

Query: 190 LT 191
           + 
Sbjct: 137 VV 138

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 17/137 (12%)

Query: 59  YWDE--SNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDG 116
            +D        ++ + +  L+ ++  +    K    +D+ CG G+    LA +    V+G
Sbjct: 21  LYDLVHQGKGKDYHREAADLAALV--RRHSPKAASLLDVACGTGMHLRHLADS-FGTVEG 77

Query: 117 ITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGW-FFESIFHM----NH 171
           + +S     + M  A A          HGD  +       F      F SI H+      
Sbjct: 78  LELS-----ADM-LAIARRRNPDAVLHHGDMRDFSLGR-RFSAVTCMFSSIGHLAGQAEL 130

Query: 172 SAALNEARRVLKSGSIL 188
            AAL      +    ++
Sbjct: 131 DAALERFAAHVLPDGVV 147

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 55.9 bits (134), Expect = 3e-09
 Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 14/167 (8%)

Query: 78  RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLL 137
             +I   +  +G   +D+GCG G   ++  +A      G+ I++     A   A+     
Sbjct: 55  ACLIRLYT-KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR 113

Query: 138 DKVNFLHGDALNLPFD-NDSFDGGWFFESIFHMNHS-----AALNEARRVLKSGSILTLT 191
            KV F   D+     D    FD      S  +   +      A     R L+ G    +T
Sbjct: 114 FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 173

Query: 192 DLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID 238
                    + +   E  K+   SN         + +     + +  
Sbjct: 174 VP-------SRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYR 213

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 54.8 bits (131), Expect = 1e-08
 Identities = 19/111 (17%), Positives = 28/111 (25%), Gaps = 10/111 (9%)

Query: 88  KGQRFIDIGCGFGLSGIRLAKAKGC--RVDGITISKFQQESAMKTAKAEGL-----LDKV 140
                +D GCG G     L         + G+ IS      A K    +       +   
Sbjct: 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSA 780

Query: 141 NFLHGDALNLPFDNDSFDGGWFFESIFHMN---HSAALNEARRVLKSGSIL 188
               G  L         D G   E I HM          +   +     ++
Sbjct: 781 TLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLI 831

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 53.1 bits (127), Expect = 3e-08
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 16/116 (13%)

Query: 88  KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL-LDKVNFLHGD 146
              R +D+ CG G+  I L +  G  V  +  S    + A+K             ++  +
Sbjct: 57  GCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEE 115

Query: 147 ALNLPFDNDSFDGGWF------FESIFHM--------NHSAALNEARRVLKSGSIL 188
           A  L  D D   G  F        S  H+         H  AL     +++ G +L
Sbjct: 116 ANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLL 171

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 24/194 (12%), Positives = 53/194 (27%), Gaps = 21/194 (10%)

Query: 59  YWDESNSKDNFAQGS-DKLSRIMINK-TSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDG 116
              ++           D +   M+   T   +    +++G   G       +     +  
Sbjct: 11  EIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDF-TSRLQEHFNDITC 69

Query: 117 ITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAAL- 175
           +  S    E A+  A+   L D + ++H    +       +D       + H++   AL 
Sbjct: 70  VEAS----EEAISHAQ-GRLKDGITYIHSRFEDAQLPR-RYDNIVLTHVLEHIDDPVALL 123

Query: 176 -NEARRVLKSGSILTLT--DLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY----PD--- 225
                  L  G  L L   +   +S               +        H      D   
Sbjct: 124 KRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLE 183

Query: 226 -LLNKSGFELIKID 238
              +++G ++    
Sbjct: 184 RDASRAGLQVTYRS 197

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280

 Score = 52.5 bits (125), Expect = 4e-08
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 75  KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAK 132
           K +  ++++  I  G R ++ G G G   + L +A G   +V          E A +   
Sbjct: 86  KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 145

Query: 133 A--EGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSIL 188
                  D    +  D  +    + S D      ++  M      L+   R+L +G +L
Sbjct: 146 GCYGQPPDNWRLVVSDLADSELPDGSVD-----RAVLDMLAPWEVLDAVSRLLVAGGVL 199

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 86  ITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
           +++G   +D+G       I L +           + +   +SA+K  +A GL +K+    
Sbjct: 13  VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRL 72

Query: 145 GDALNLPFDNDSFD 158
            + L    + D   
Sbjct: 73  ANGLAAFEETDQVS 86

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 51.4 bits (123), Expect = 6e-08
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 86  ITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
           ITK +R  DIG           K +         +     +SA K  ++ GL ++++   
Sbjct: 19  ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRK 78

Query: 145 GDALNLPFDNDSFD 158
           G+ L +    D+ D
Sbjct: 79  GNGLAVIEKKDAID 92

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 51.3 bits (123), Expect = 9e-08
 Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 88  KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA 147
           +  + ID+  G G+  + L+     ++ G+ I +   + A ++     L D++  +  D 
Sbjct: 49  RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL 108

Query: 148 LNLP--FDNDSFD 158
             +      +  D
Sbjct: 109 KKITDLIPKERAD 121

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 51.8 bits (124), Expect = 9e-08
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 18/134 (13%)

Query: 70  AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAM 128
             G D  +R  +           +D+GCG G+ G+ L       +V  +  S     S+ 
Sbjct: 204 RTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSR 263

Query: 129 KTAKAEGL--LDKVNFLHGDALNLPFDNDSFD----------GGWFFESIFHMNHSAALN 176
              +      LD+  F+  +AL+   +   F+               +++         +
Sbjct: 264 LNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAW----EMFH 318

Query: 177 EARRVLKSGSILTL 190
            ARR LK    L +
Sbjct: 319 HARRCLKINGELYI 332

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 23/145 (15%), Positives = 41/145 (28%), Gaps = 24/145 (16%)

Query: 57  WGY---WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR 113
           W       E             LS               ++IGC  G    +LA     R
Sbjct: 27  WRLDDNPFERERH--TQLLRLSLSS--------GAVSNGLEIGCAAGAFTEKLAP-HCKR 75

Query: 114 VDGITISKFQQESAMKTAKAE-GLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH- 171
           +  I +       A+  A         +++   D L      + FD     E ++++   
Sbjct: 76  LTVIDVM----PRAIGRACQRTKRWSHISWAATDILQFSTA-ELFDLIVVAEVLYYLEDM 130

Query: 172 ---SAALNEARRVLKSGSILTLTDL 193
                A++   ++L  G  L     
Sbjct: 131 TQMRTAIDNMVKMLAPGGHLVFGSA 155

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 17/126 (13%)

Query: 74  DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA 133
           DK ++I++    + K    +D+GCG+G+ GI LA  +        I++   + A +  K 
Sbjct: 38  DKGTKILVENVVVDKDDDILDLGCGYGVIGIALAD-EVKSTTMADINRRAIKLAKENIKL 96

Query: 134 EGLLD-KVNFLHGDALNLPFDNDSFDGGWFFESI-----FHMNHSAA---LNEARRVLKS 184
             L +  +  +H D       +  ++       I                + E + +LK 
Sbjct: 97  NNLDNYDIRVVHSDLYE-NVKDRKYN------KIITNPPIRAGKEVLHRIIEEGKELLKD 149

Query: 185 GSILTL 190
              + +
Sbjct: 150 NGEIWV 155

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 86  ITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
           + KG R +D+G       I L +   C       +     +SA+K     GL  K++   
Sbjct: 19  VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRL 78

Query: 145 GDALNLPFDNDSFD 158
            + L+   + D+ D
Sbjct: 79  ANGLSAFEEADNID 92

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438

 Score = 50.2 bits (119), Expect = 3e-07
 Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 12/155 (7%)

Query: 60  WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR-VDGIT 118
             E  S + + + S  L   MI++  +T    F+D+G G G   +++A A  C+   G+ 
Sbjct: 145 NYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVE 204

Query: 119 ISKF-------QQESAMKTAKAEGLLD-KVNFLHGDALNLPFDNDSFDGGWFFESIFHMN 170
            +               K  K  G    +     GD L+  +     +    F + F   
Sbjct: 205 KADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFG 264

Query: 171 HS--AALNEARRVLKSGS-ILTLTDLPLLSVSKND 202
                 L E    +K G  I++      L+   N 
Sbjct: 265 PEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 299

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 48.8 bits (116), Expect = 5e-07
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 7/117 (5%)

Query: 74  DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTA 131
            K + +++    I+ G   ++ G G G   + LA   G   RV    I +   + A +  
Sbjct: 79  PKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENI 138

Query: 132 KAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSIL 188
           K  G  D+V     D +    + ++ D                +  A + LK G   
Sbjct: 139 KWAGFDDRVTIKLKD-IYEGIEEENVDHVILDLP----QPERVVEHAAKALKPGGFF 190

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 11/119 (9%)

Query: 86  ITKGQRFIDIGCGFGLSGIRLA-KAKGCRVDGITISKFQQESAMKTAK---AEGLLDKVN 141
             +  R  D+G G G +G+ +A + +   V     S+   E A ++ +         ++ 
Sbjct: 34  DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIE 93

Query: 142 FLHGDALNLPFDN-------DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL 193
            L  D               + F                  +  +    + +     D 
Sbjct: 94  VLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDW 152

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 49.2 bits (117), Expect = 6e-07
 Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 15/134 (11%)

Query: 69  FAQGSDKLSRIMIN------KTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKF 122
            A   D  S +++            +G++ +D+G G+G   + LA+  G  V G+     
Sbjct: 208 SAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLAR-MGAEVVGVEDDLA 266

Query: 123 QQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWF---FESIFHMNHSAA---LN 176
              S  K  +A  L  K   LH D      +   FD       F     +    A   +N
Sbjct: 267 SVLSLQKGLEANAL--KAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVN 324

Query: 177 EARRVLKSGSILTL 190
            A   L+ G +  L
Sbjct: 325 VAAARLRPGGVFFL 338

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 11/114 (9%)

Query: 79  IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD 138
           +++      K    +D+GCG G   + LA     RV  I  +     +     +  GL D
Sbjct: 24  LIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGD 82

Query: 139 KVNFLHGDALNLPFDNDSFDGGWFFESIF----HMNHSAALNEARRVLKSGSIL 188
            V  + GDA          D                    L   +  LK G  +
Sbjct: 83  NVTLMEGDAPEALCKIPDID------IAVVGGSGGELQEILRIIKDKLKPGGRI 130

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 47.6 bits (113), Expect = 8e-07
 Identities = 15/122 (12%), Positives = 32/122 (26%), Gaps = 13/122 (10%)

Query: 81  INKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKV 140
                +      +D   G G     LA     +V    + +       +     G ++  
Sbjct: 15  FLAEVLDDESIVVDATMGNGNDTAFLAG-LSKKVYAFDVQEQALGKTSQRLSDLG-IENT 72

Query: 141 NFLHGDALNLP------FDNDSFDGGWFFESIFHMNHSA-----ALNEARRVLKSGSILT 189
             +     NL            F+ G+   +   +         A+ +    L+ G  L 
Sbjct: 73  ELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLA 132

Query: 190 LT 191
           + 
Sbjct: 133 IM 134

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 25/131 (19%)

Query: 74  DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAK-AKGCRVDGITISKFQQESAMKTAK 132
           D  S+++++  +     + +D+GCG G+  +  A+ +   R+    +S    E++  T  
Sbjct: 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLA 241

Query: 133 AEGLLDKVNFLHGDAL-NLPFDNDSFDGGWFFESI-----FH----MNHSAA---LNEAR 179
           A G+  +      +    +      FD       I     FH     +  AA   +  A 
Sbjct: 242 ANGV--EGEVFASNVFSEVK---GRFD------MIISNPPFHDGMQTSLDAAQTLIRGAV 290

Query: 180 RVLKSGSILTL 190
           R L SG  L +
Sbjct: 291 RHLNSGGELRI 301

>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244

 Score = 47.6 bits (112), Expect = 1e-06
 Identities = 33/224 (14%), Positives = 76/224 (33%), Gaps = 24/224 (10%)

Query: 37  TLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIG 96
           TL+ +P  ++G  +F  ++    + +   +      +   +  M+ +  +T      D+G
Sbjct: 8   TLFSTPIAKLGDFIFDENV-AEVFPDMIQRSVPGYSNIITAIGMLAERFVTADSNVYDLG 66

Query: 97  CGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD 153
           C  G + +   +       ++ GI  S+   E   +   A      V  L  D  ++   
Sbjct: 67  CSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK 126

Query: 154 NDSFDGGWF-FESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKN 212
           N S     F  + +   +  A L +    L    +L L++      +K ++   +   + 
Sbjct: 127 NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQF 186

Query: 213 IHSNFIL-------------------VEHYPDLLNKSGFELIKI 237
             +N                      +E +   L   GF  +++
Sbjct: 187 KRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVEL 230

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 85  SITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
              K    +D  CG G + I+ A   G RV  I I   +   A   A+  G+ DK+ F+ 
Sbjct: 75  QSFKCDVVVDAFCGVGGNTIQFAL-TGMRVIAIDIDPVKIALARNNAEVYGIADKIEFIC 133

Query: 145 GDALNL 150
           GD L L
Sbjct: 134 GDFLLL 139

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 53/309 (17%), Positives = 89/309 (28%), Gaps = 88/309 (28%)

Query: 1   MNKIDTQKNKNKDIKDIKENKDIKENKGNKGKKTVATLYDSPE----------GQIGSVL 50
            + +      +  +          E K    K       D P             I   +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 51  FGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITK------GQRFIDIGCGFG---- 100
             G   W  W   N         DKL+ I+  ++S+         + F  +   F     
Sbjct: 338 RDGLATWDNWKHVN--------CDKLTTII--ESSLNVLEPAEYRKMFDRLSV-FPPSAH 386

Query: 101 -----LSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL-------------LDKVNF 142
                LS   +          + ++K  + S ++    E               L+    
Sbjct: 387 IPTILLS--LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 143 LHG---DALNLP--FDNDSF-----DGGWFFESIFHM---NHSAALNEARRVL------- 182
           LH    D  N+P  FD+D       D  ++     H+    H   +   R V        
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504

Query: 183 -----------KSGSIL-TLTDLPLLS--VSKNDNKFKEYVKKNIHSNFILVEHYPDLLN 228
                       SGSIL TL  L      +  ND K++  V   +   F L +   +L+ 
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD--F-LPKIEENLIC 561

Query: 229 KSGFELIKI 237
               +L++I
Sbjct: 562 SKYTDLLRI 570

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 30/174 (17%), Positives = 54/174 (31%), Gaps = 39/174 (22%)

Query: 79  IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD 138
           + +   +  +G+   DIG G G   +    A G R   I     + E+  K     GL  
Sbjct: 46  LTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSP 104

Query: 139 KVNFLHGDALNLPFDNDSFDGGWFFESIFHM--NHSAALNEARRVLKSGSILTLTDLPLL 196
           ++  + G A     D    +      ++F       A  +     L  G+ +        
Sbjct: 105 RMRAVQGTAPAALADLPLPE------AVFIGGGGSQALYDRLWEWLAPGTRIVA------ 152

Query: 197 SVSKNDNKFKEYVKKNIHSNFILVEHYPDL---LNKSGFELIKIDDITSHVMPL 247
                              N + +E    L     + G +L++ID   +   PL
Sbjct: 153 -------------------NAVTLESETLLTQLHARHGGQLLRID--IAQAEPL 185

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 26/194 (13%), Positives = 58/194 (29%), Gaps = 31/194 (15%)

Query: 87  TKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKF----QQESAMKTAKAEGLLDKVN 141
              +R +DIG   G    +  +  K   V   TI       Q E   K        ++++
Sbjct: 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEV---TI--VDLPQQLEMMRKQTAGLSGSERIH 232

Query: 142 FLHGDALNLPFDNDSFDGG---WFFESIFHMNHSAA-----LNEARRVLKSGSILTLTDL 193
               + L+    +  F  G    +         S       L    + +   S + + + 
Sbjct: 233 GHGANLLD---RDVPFPTGFDAVWMSQFLD-CFSEEEVISILTRVAQSIGKDSKVYIME- 287

Query: 194 PLLSVSKNDNKFKEYVKKNIHSNFIL--------VEHYPDLLNKSGFELIKIDDITSHVM 245
            L    + +       + +++   +          +     +  +G E+ +I D      
Sbjct: 288 TLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGH 347

Query: 246 PLLVPKLTEATLTY 259
            +L  +L E    +
Sbjct: 348 SILQCRLKEGHHHH 361

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 33/183 (18%), Positives = 64/183 (34%), Gaps = 13/183 (7%)

Query: 93  IDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAK---AEGLLDKVNFLHGDAL 148
           ID+G G G +  +LA         GI   K       K      ++G L  V F+   A 
Sbjct: 29  IDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAE 88

Query: 149 NLPFD----NDSFDGGWFFESIFH---MNHSAALNEARRVLKSGSILTLTDLPLLSVSKN 201
           +LPF+     DS    + + ++       +   L+    + K  +          S  + 
Sbjct: 89  SLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEA 148

Query: 202 DNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKK 261
           + K +      +   + L E Y   L+ SGF +  + ++ +  +        +     +K
Sbjct: 149 EIKKRGLPL--LSKAYFLSEQYKAELSNSGFRIDDVKELDNEYVKQFNSLWAKRLAFGRK 206

Query: 262 EIY 264
             +
Sbjct: 207 RSF 209

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 86  ITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL 143
           I + Q  +  G G G +    A+A     RV  I   +   E A +     GL+D+V   
Sbjct: 54  IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQ 113

Query: 144 HGDALNLPFDNDSFDGGWFFESIF----HMNHSAALNEARRVLKSGSIL 188
            GD L +       D       +F      N +  L    R L   ++L
Sbjct: 114 VGDPLGIAAGQRDID---I---LFMDCDVFNGADVLERMNRCLAKNALL 156

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 81  INKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAK--AE--GL 136
           +        +   DIG G G  G+ +AK     V    +S      A++ A+  AE  G+
Sbjct: 116 LELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVS----SKAVEIARKNAERHGV 171

Query: 137 LDKVNFLHGDALN-LPFDNDSFD 158
            D+     G+ L        S +
Sbjct: 172 SDRFFVRKGEFLEPFKEKFASIE 194

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 27/135 (20%)

Query: 75  KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-----KGCRVDGITISKFQQESAMK 129
            L++ ++       G R +D   G   SG    +A         V    + + +   A +
Sbjct: 190 VLAQALLRLADARPGMRVLDPFTG---SGTIALEAASTLGPTSPVYAGDLDEKRLGLARE 246

Query: 130 TAKAEGLLDKVNFLHGDALNLPFDNDSFDG-------GWFFESI-----FHMNHSAALNE 177
            A A GL   + FL  DA +LP      D        G     +         +   L  
Sbjct: 247 AALASGL-SWIRFLRADARHLPRFFPEVDRILANPPHG---LRLGRKEGLFHLYWDFLRG 302

Query: 178 ARRVLKSG---SILT 189
           A  +L  G   ++LT
Sbjct: 303 ALALLPPGGRVALLT 317

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 42.3 bits (99), Expect = 9e-05
 Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 9/117 (7%)

Query: 75  KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC--RVDGITISKFQQESAMKTAK 132
           K S  +     + +G R ID G G G     LA+A G   +V      +   + A     
Sbjct: 99  KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLT 158

Query: 133 AEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSIL 188
             GL+++V     D       ++ FD          + +    +++    LK G   
Sbjct: 159 KWGLIERVTIKVRDI------SEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRF 209

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 25/170 (14%)

Query: 88  KGQRFIDIGCGFGLSGIRLAKAKGCR-VDGITISKFQQESAMKTA---KAEGLLDKVNFL 143
                +D+G G G    ++A+    R V  +   K + E     A    A+G L  + +L
Sbjct: 27  YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYL 86

Query: 144 HGDALNLPFDND----SFDGGWFFESIFH---MNHSAALNEARRVLKSGSILTLTDLPLL 196
              A  LP  +          W   S+      +    L     V + G+   +      
Sbjct: 87  WATAERLPPLSGVGELHVLMPW--GSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL---- 140

Query: 197 SVSKNDNKFKEYV----KKNIHSNFILVEHYPDLLNKSGFELIKIDDITS 242
               N + ++  V    +    +     E       ++G++L     +  
Sbjct: 141 ----NLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCRYLEP 186

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 4/76 (5%)

Query: 86  ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL-LDKVNFLH 144
           I +G + +D+  G G+  I L      +   I  +     +A             VN L 
Sbjct: 91  IREGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILT 149

Query: 145 GDALNL--PFDNDSFD 158
           GD             D
Sbjct: 150 GDFKEYLPLIKTFHPD 165

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 79  IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRV---DGITISKFQQESAMKTAKAEG 135
           I+ N T   K +  +D+GCG G+     A+A   ++   +  T+++     A    K+  
Sbjct: 150 ILQNHTDF-KDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQH----AEVLVKSNN 204

Query: 136 LLDKVNFLHGDA--LNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSIL 188
           L D++  + G    ++LP   D          +F+     +   A++ LK    +
Sbjct: 205 LTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNM 259

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 79  IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRV---DGITISKFQQESAMKTAKAEG 135
           I+ N T   K +  +D+GCG G+     A+A   ++   +  T+++     A    K+  
Sbjct: 42  ILQNHTDF-KDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQH----AEVLVKSNN 96

Query: 136 LLDKVNFLHGDA--LNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSIL 188
           L D++  + G    ++LP   D          +F+     +   A++ LK    +
Sbjct: 97  LTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNM 151

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 86  ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG 145
           ++     +D+  G G     +A     ++  I I+    E   K  K   L  K+  +  
Sbjct: 193 VSLNDVVVDMFAGVG--PFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILS 250

Query: 146 DALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSIL 188
           D   +    +         +         +++A  +++ G ++
Sbjct: 251 DVREVDVKGNRVIMNLPKFAH------KFIDKALDIVEEGGVI 287

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376

 Score = 41.3 bits (96), Expect = 3e-04
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 11/116 (9%)

Query: 79  IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRV---DGITISKFQQESAMKTAKAEG 135
           +  NK    +G+  +D+G G G+  I  A+A   +V   +   ++      A    KA  
Sbjct: 55  VFQNKHHF-EGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADH----ARALVKANN 109

Query: 136 LLDKVNFLHGDA--LNLPFDNDSFDGGWFFESIFHMNHSAALNEAR-RVLKSGSIL 188
           L   V  + G    ++LP   D     W    +   +   ++  AR R LK   ++
Sbjct: 110 LDHIVEVIEGSVEDISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVM 165

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 36/239 (15%), Positives = 76/239 (31%), Gaps = 42/239 (17%)

Query: 35  VATLYDSPEGQIGSVLFGGHMHWGYWD--ESNSKDN--FAQGSDKLSRIMINKT----SI 86
           +A L D     +   + G     G         +DN  F +     ++  I        +
Sbjct: 129 MAFLADDFYMGLSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAKL 188

Query: 87  TKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQ----ESAMKTAKAEGLLDKVN 141
              ++ ID+G G G     + K          TI         +   + A  +G+ D++ 
Sbjct: 189 DGVKKMIDVGGGIGDISAAMLKHFPELDS---TI--LNLPGAIDLVNENAAEKGVADRMR 243

Query: 142 FLHGDALNLPFDNDSFDGG--WFFESIFHMNHSAA-----LNEARRVLKSGSILTLTDLP 194
            +  D        +S+       F  I + + +         +A   ++SG  L + D  
Sbjct: 244 GIAVDIYK-----ESYPEADAVLFCRILY-SANEQLSTIMCKKAFDAMRSGGRLLILD-M 296

Query: 195 LLSVSKNDNKFKEYVKKNIHSNFILV--------EHYPDLLNKSGFELIKIDDITSHVM 245
           ++   +N N         I    +            Y ++L   G++ + +     H++
Sbjct: 297 VIDDPENPNFDYLSH--YILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKYDHLL 353

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 16/90 (17%)

Query: 77  SRIMINKTSITKGQRFIDIGCGFGLSG---IRLAKA-KGCRVDGITISKFQQESAMKTAK 132
           SR +  KT +  G+  ++IG G          +A+    C+V    +     E   + A+
Sbjct: 44  SRYIFLKTFLRGGEVALEIGTG---HTAMMALMAEKFFNCKVTATEVD----EEFFEYAR 96

Query: 133 --AE--GLLDKVNFLHGDALNLPFDNDSFD 158
              E      ++   +G  +       +FD
Sbjct: 97  RNIERNNSNVRLVKSNGGIIK-GVVEGTFD 125

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 14/118 (11%)

Query: 79  IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD 138
           I+ NK    K +  +D+GCG G+  +  AK     V G+ +S    E A +  +  G  D
Sbjct: 30  IIQNKDLF-KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSI-IEMAKELVELNGFSD 87

Query: 139 KVNFLHGDA--LNLPFD------NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSIL 188
           K+  L G    ++LPF       ++       +ES+      A        L  G ++
Sbjct: 88  KITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYA----RDHYLVEGGLI 141

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 26/227 (11%), Positives = 61/227 (26%), Gaps = 54/227 (23%)

Query: 56  HWGYWDESNSKDNFAQGSDKLSRIMINKT------SITKGQRFIDIGCGFGLSGIRLAKA 109
                 E      FA+    +              +  +  + +DI    GL GI +A+ 
Sbjct: 127 EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQH 186

Query: 110 KGCRVDGITISKFQQ----ESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGW---F 162
                    I         E A + A+ +G+  + + + G           +   +    
Sbjct: 187 ----NPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGS-----AFEVDYGNDYDLVL 237

Query: 163 FESIFHMNHSAA-----LNEARRVLKSGSILTLTDLPLLSVSKNDNKF------------ 205
             +  H +   A     L + +  L     + + D  + +  +                 
Sbjct: 238 LPNFLH-HFDVATCEQLLRKIKTALAVEGKVIVFD-FIPNSDRITPPDAAAFSLVMLATT 295

Query: 206 ---KEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLV 249
                Y              Y  + + +GF   ++  + +    ++V
Sbjct: 296 PNGDAYT----------FAEYESMFSNAGFSHSQLHSLPTTQQQVIV 332

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 86  ITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
           +   +  ++IG   G S ++ A       V  I  ++   + A +        ++V  + 
Sbjct: 69  MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIE 128

Query: 145 GDALN-LP-FDNDSFD 158
           G+AL      ++  +D
Sbjct: 129 GNALEQFENVNDKVYD 144

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 8/117 (6%)

Query: 75  KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAK 132
           K +  M+    +  G R ++ G G G   + LA+A  +   V+           A +  +
Sbjct: 83  KDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVR 142

Query: 133 AEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSIL 188
           A   ++ V F  G       +  ++DG         +      L +A   LK    L
Sbjct: 143 AFWQVENVRFHLGKLEEAELEEAAYDGV-----ALDLMEPWKVLEKAALALKPDRFL 194

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 9/77 (11%)

Query: 86  ITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
           +    R ++IG   G S IR+A+A     +  I   + + E A K  KA GL  ++  L 
Sbjct: 52  MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLF 111

Query: 145 GDALNL--------PFD 153
           GDAL L         FD
Sbjct: 112 GDALQLGEKLELYPLFD 128

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 39.6 bits (91), Expect = 8e-04
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 69  FAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESA 127
           +   S +  R+ + K    +G+  +D+GC  G   + +A   G  R+ G+ I      SA
Sbjct: 27  YRNPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSA 86

Query: 128 MKTAKAEGLLDKVNFLHGDALNLPFDNDSFD 158
            +  +     +++          P       
Sbjct: 87  RQNIRHYL-SEELRLPPQTLEGDPGAEGEEG 116

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 79  IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD 138
           I  N     K +  +D+GCG G+  +  AKA   +V G+  S+   + AM   +   L D
Sbjct: 56  IYQNPHIF-KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLED 113

Query: 139 KVNFLHGDALNLPFDNDSFD---GGWFFESIFHMNHSAALNEAR-RVLKSGSIL 188
            +  + G    +    +  D     W    +   +   ++  A+ + L  G  +
Sbjct: 114 TITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSV 167

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 Length = 433

 Score = 39.5 bits (91), Expect = 9e-04
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 14/137 (10%)

Query: 80  MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITI-------SKFQQESAMKTA 131
           +  +  + KG  F+D+G G G   ++ A   GC    G  I       +  Q E   K  
Sbjct: 234 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRC 293

Query: 132 KAEGL--LDKVNFLHGDALNLPFDNDSFDGG---WFFESIFHMNHSAALNEARRVLKSGS 186
           K  G+   +    L    ++     +             +F  + +  + +  +  K G 
Sbjct: 294 KLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGC 353

Query: 187 -ILTLTDLPLLSVSKND 202
            I++L  L  L+   N 
Sbjct: 354 KIISLKSLRSLTYQINF 370

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	298
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	100.0
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	100.0
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	100.0
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	100.0
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	100.0
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.97
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.96
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.96
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.96
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.95
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.93
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.92
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.92
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.92
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.92
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.92
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.92
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.91
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.91
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.91
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.91
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.91
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.91
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.91
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.9
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.9
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.9
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.9
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.89
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.89
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.89
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.89
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.88
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.88
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.88
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.88
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.87
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.87
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.87
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.87
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.87
3ocj_A	305	Putative exported protein; structural genomics, PS	99.87
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.87
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.87
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.87
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.86
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.86
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.86
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.86
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.86
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.85
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.85
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.85
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.85
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.85
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.84
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.84
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.84
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.84
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.84
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.84
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.84
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.84
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.84
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.83
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.83
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.83
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.83
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.83
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.83
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.82
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.82
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.82
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.82
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.82
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.81
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.81
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.81
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.81
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.81
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.81
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.8
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.8
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.8
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.8
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.79
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.79
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.79
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.79
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.79
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.79
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.78
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.78
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.78
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.78
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.78
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.77
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.77
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.77
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.76
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.76
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.76
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.76
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.76
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.76
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.75
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.75
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.75
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.75
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.75
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.74
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.74
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.74
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.74
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.74
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.74
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.74
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.73
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.73
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.73
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.73
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.73
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.73
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.72
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.72
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.72
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.72
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.72
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.71
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.71
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.71
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.71
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.7
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.7
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.7
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.7
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.7
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.7
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.7
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.7
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.7
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.69
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.69
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.69
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.69
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.69
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.69
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.69
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.69
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.68
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.68
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.68
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.68
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.67
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.67
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.67
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.67
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.67
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.67
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.66
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.66
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.66
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.66
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.66
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.66
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.66
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.65
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.65
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.65
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.65
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.65
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.65
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.65
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.64
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.64
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.64
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.64
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.63
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.63
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.63
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.62
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.62
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.61
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.61
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.61
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.61
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.6
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.6
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.6
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.6
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.6
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.6
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.6
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.59
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.59
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.58
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.57
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.57
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.56
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.56
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.56
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.56
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.56
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.55
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.55
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.55
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.54
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.54
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.54
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.53
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.53
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.53
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.51
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.51
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.5
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.5
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.48
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.48
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.47
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.46
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.46
2o07_A	304	Spermidine synthase; structural genomics, structur	99.46
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.46
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.45
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.45
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.45
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.45
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.44
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.44
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.44
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.43
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.43
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.43
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.43
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.42
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.42
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.41
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.41
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.41
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.41
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.4
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.4
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.39
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.39
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.37
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.37
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.36
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.35
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.35
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.35
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.33
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.33
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.32
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.32
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.31
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.27
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.25
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.25
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.24
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.24
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	99.22
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	99.17
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.17
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.15
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.12
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.12
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.12
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.12
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.1
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.09
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.08
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.07
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	99.04
3khk_A	544	Type I restriction-modification system methylation	99.03
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.0
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.98
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.97
3lkd_A	542	Type I restriction-modification system methyltrans	98.97
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.97
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.92
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.87
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.84
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.84
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.74
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.67
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.66
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.64
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.62
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.6
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.48
3ufb_A	530	Type I restriction-modification system methyltran	98.41
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.39
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.38
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	98.34
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.31
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.29
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	98.21
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.21
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.11
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.91
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.85
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.81
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.79
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	97.76
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.6
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.43
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.37
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.33
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	97.11
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.11
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.08
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.07
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.03
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	97.01
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.98
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.94
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.91
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.89
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.88
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	96.88
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.8
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.8
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.77
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.74
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.71
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.66
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.65
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.62
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.62
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.62
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.62
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.61
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.56
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.55
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.55
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.52
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.51
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.5
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.49
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	96.48
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.47
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.47
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.44
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.43
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.42
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	96.35
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.3
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	96.29
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.29
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	96.29
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.28
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	96.28
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.26
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.24
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.2
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.17
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.15
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	96.14
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.13
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.12
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.11
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.09
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	96.08
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.08
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	96.07
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	96.06
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.02
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	95.96
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	95.95
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.9
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.89
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	95.86
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	95.76
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	95.67
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.27
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	95.19
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.14
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.11
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	95.02
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	94.98
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	94.86
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	94.69
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	94.58
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	94.5
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	94.37
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.24
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.02
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.0
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.7
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.7
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	93.62
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	93.52
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.49
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	93.38
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.19
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	93.15
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	93.03
2zig_A	297	TTHA0409, putative modification methylase; methylt	92.85
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	92.67
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	92.62
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	92.41
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	91.93
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	91.49
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	91.4
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	91.3
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	91.08
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	90.91
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	90.89
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	90.74
1id1_A	153	Putative potassium channel protein; RCK domain, E.	90.43
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	90.26
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	89.94
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	89.91
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	89.83
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	89.74
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	89.69
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	88.91
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	88.84
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	88.83
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	88.81
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	88.27
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	88.16
3me5_A	482	Cytosine-specific methyltransferase; structural ge	88.07
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	87.93
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	87.83
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	87.69
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	87.59
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	87.58
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	87.25
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	87.22
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	87.2
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	86.6
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	86.6
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	86.54
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	86.39
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	86.17
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	86.15
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	85.84
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	85.51
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	85.43
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	85.06
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	84.51
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	84.38
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	84.36
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	84.27
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	84.06
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	83.71
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	83.65
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	83.48
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	83.21
2km1_A	136	Protein DRE2; yeast, antiapoptotic, protein bindin	83.03
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	82.98
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	82.93
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	82.89
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	82.86
3imf_A	257	Short chain dehydrogenase; structural genomics, in	82.78
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	82.76
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	82.71
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	82.66
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	82.22
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	82.08
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	82.07
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	81.88
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	81.87
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	81.78
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	81.73
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	81.71
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	81.59
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	81.55
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	81.53
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	81.34
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	81.18
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	81.12
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	81.07
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	80.69
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	80.5
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	80.49
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	80.44
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	80.19
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	80.11
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	80.08
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	80.04

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=100.00  E-value=4.3e-37  Score=258.77  Aligned_cols=265  Identities=28%  Similarity=0.491  Sum_probs=206.9

Q ss_pred             CchhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh
Q psy2408          30 KGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA  109 (298)
Q Consensus        30 ~~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~  109 (298)
                      .+.+.+++|||.. +++|+.+++..++++||........+..++.++.+.+++.+.+.++.+|||+|||+|..+..+++.
T Consensus         4 p~~~~~~~~Yd~~-~~~y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~   82 (273)
T 3bus_A            4 PTPEEVRQMYDDF-TDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATA   82 (273)
T ss_dssp             --------------------CCGGGCCCCCCCCSSCCCCHHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHH
T ss_pred             CcHHHHHHHHcch-HHHHHHHcCCCceEEecCCCccccCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHh
Confidence            3466789999999 999999999999999998755557899999999999999999999999999999999999999987


Q ss_pred             cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEE
Q psy2408         110 KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSIL  188 (298)
Q Consensus       110 ~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l  188 (298)
                      .+++|+|+|+|+.+++.+++++...++.++++++++|+.++|+++++||+|++..+++|++++ .+++++.++|+|||++
T Consensus        83 ~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l  162 (273)
T 3bus_A           83 RDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTV  162 (273)
T ss_dssp             SCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEE
T ss_pred             cCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEE
Confidence            788999999999999999999999888888999999999998888999999999999999999 9999999999999999


Q ss_pred             EEEeCCCCCCCCCh--hHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccchHHHHHHHHHHHHHHHHhh
Q psy2408         189 TLTDLPLLSVSKND--NKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKS  266 (298)
Q Consensus       189 ~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (298)
                      ++.++.........  .....+........+++.+++.++++++||+++....++.++.. ++..|.+.+...+..+...
T Consensus       163 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  241 (273)
T 3bus_A          163 AIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDISAQARP-SLVKTAEAFENARSQVEPF  241 (273)
T ss_dssp             EEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEECHHHHTT-HHHHHHHHHHHTHHHHHHH
T ss_pred             EEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEECcHhHHH-HHHHHHHHHHHhHHHHHhh
Confidence            99987755433301  01112222233567788999999999999999999999888887 7888888887777767666


Q ss_pred             CCC--hHHHHHHHHHHHhhccccccEEEEEEEeC
Q psy2408         267 IPN--PEKSIDNWLYLFKYMSKNLGYIIVTAKKI  298 (298)
Q Consensus       267 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~k~  298 (298)
                      +++  .+.+.+.|...+  ..+.++|++++|+||
T Consensus       242 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~kp  273 (273)
T 3bus_A          242 MGAEGLDRMIATFRGLA--EVPEAGYVLIGARKP  273 (273)
T ss_dssp             HCHHHHHHHHHHHHHHH--TCTTEEEEEEEEECC
T ss_pred             cCHHHHHHHHHHHHHHh--hCCCeeEEEEEEECC
Confidence            664  345555666542  366799999999998

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=100.00  E-value=5e-33  Score=235.64  Aligned_cols=262  Identities=14%  Similarity=0.200  Sum_probs=217.1

Q ss_pred             CCCCchhhHHhhhcCCcccccccccCCcee--EeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH
Q psy2408          27 KGNKGKKTVATLYDSPEGQIGSVLFGGHMH--WGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGI  104 (298)
Q Consensus        27 ~~~~~~~~~~~~yd~~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~  104 (298)
                      ......++++.|||.. ..+|..+++..+.  .++|..  +...+.+++.+..+.+++.+.+.++.+|||||||+|.++.
T Consensus         4 ~~~~~~~~i~~~Yd~~-~~~~~~~~~~~~~y~~~~~~~--~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~   80 (287)
T 1kpg_A            4 ELKPHFANVQAHYDLS-DDFFRLFLDPTQTYSCAYFER--DDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMM   80 (287)
T ss_dssp             CSCCCHHHHHHHHTSC-HHHHTTTSCTTCCCSCCCCSS--TTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHH
T ss_pred             cccccHHHHHHhcCCC-HHHHHHhcCCCCCcceEEecC--CCCCHHHHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHH
Confidence            3456788999999998 9999988887654  578875  4668899999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccccc--ChH-HHHHHHhhc
Q psy2408         105 RLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM--NHS-AALNEARRV  181 (298)
Q Consensus       105 ~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~--~~~-~~l~~~~r~  181 (298)
                      .+++..+.+|+|+|+|+.+++.+++++...++..++.++.+|+.+++   ++||+|++..+++|+  .++ .+++++.++
T Consensus        81 ~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~  157 (287)
T 1kpg_A           81 RAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRL  157 (287)
T ss_dssp             HHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHh
Confidence            99976788999999999999999999998888778999999998765   789999999999999  556 999999999


Q ss_pred             ccCCcEEEEEeCCCCCCC-------CChh---HHHHHHHh--hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccchH
Q psy2408         182 LKSGSILTLTDLPLLSVS-------KNDN---KFKEYVKK--NIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLV  249 (298)
Q Consensus       182 LkpgG~l~i~~~~~~~~~-------~~~~---~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~  249 (298)
                      |||||++++.++......       +...   ....+...  .....+.+.+++.++++++||++++...++.++.. +.
T Consensus       158 LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y~~-~~  236 (287)
T 1kpg_A          158 LPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAK-TL  236 (287)
T ss_dssp             SCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEECHHHHHH-HH
T ss_pred             cCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEEEeCcHhHHH-HH
Confidence            999999999887643311       0000   01111111  12235668999999999999999999999888888 88


Q ss_pred             HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhc-----cccccEEEEEEEe
Q psy2408         250 PKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYM-----SKNLGYIIVTAKK  297 (298)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~k  297 (298)
                      ..|...+...++++.+..+  +++.+.|..++..|     .+.++++.++++|
T Consensus       237 ~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~f~~g~~~~~~~~~~k  287 (287)
T 1kpg_A          237 DLWSAALQANKGQAIALQS--EEVYERYMKYLTGCAEMFRIGYIDVNQFTCQK  287 (287)
T ss_dssp             HHHHHHHHHTHHHHHHHSC--HHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEC
Confidence            9999999999999988876  56777798887766     4578999999987

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=100.00  E-value=5.6e-33  Score=237.03  Aligned_cols=263  Identities=12%  Similarity=0.175  Sum_probs=220.7

Q ss_pred             cCCCCchhhHHhhhcCCcccccccccCCcee--EeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHH
Q psy2408          26 NKGNKGKKTVATLYDSPEGQIGSVLFGGHMH--WGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSG  103 (298)
Q Consensus        26 ~~~~~~~~~~~~~yd~~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~  103 (298)
                      .......+++++|||.. +++|+.+++..+.  .++|..  ....+..++.+..+.+++.+.+.++.+|||||||+|.++
T Consensus        11 ~~~~~~~~~i~~~Yd~~-~~~y~~~l~~~~~y~~~~~~~--~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~   87 (302)
T 3hem_A           11 TQLKPPVEAVRSHYDKS-NEFFKLWLDPSMTYSCAYFER--PDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTM   87 (302)
T ss_dssp             -CCCCCHHHHHHHHTSC-HHHHHHHSCTTCCCSCCCCSS--TTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHH
T ss_pred             ccccchHHHHHHhcCCC-HHHHHHhcCCCCceeeEEecC--CCCCHHHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHH
Confidence            44566789999999999 9999999887664  457876  467889999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccCh---------H-H
Q psy2408         104 IRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH---------S-A  173 (298)
Q Consensus       104 ~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~---------~-~  173 (298)
                      ..+++..+++|+|+|+|+.+++.+++++...+++++++++++|+.++   +++||+|++..+++|+++         . .
T Consensus        88 ~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~  164 (302)
T 3hem_A           88 RHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDT  164 (302)
T ss_dssp             HHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHH
T ss_pred             HHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcchHHhcCccccccchhHHHH
Confidence            99999768999999999999999999999999888899999999876   589999999999999944         3 9


Q ss_pred             HHHHHhhcccCCcEEEEEeCCCCCCCCChh----------HHHHHHHh--hcccCCCCcchHHHHHHhCCCcEEEEEeCC
Q psy2408         174 ALNEARRVLKSGSILTLTDLPLLSVSKNDN----------KFKEYVKK--NIHSNFILVEHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       174 ~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~----------~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                      +++++.++|+|||++++.++..........          .+..+...  .....+.+.+++..+++++||++++...++
T Consensus       165 ~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~  244 (302)
T 3hem_A          165 FFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIG  244 (302)
T ss_dssp             HHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred             HHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence            999999999999999998877543211000          00011111  122356788999999999999999999999


Q ss_pred             CCcccchHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhc-----cccccEEEEEEEe
Q psy2408         242 SHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYM-----SKNLGYIIVTAKK  297 (298)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~k  297 (298)
                      .++.. +.+.|.+.+...++++.+.++  +++.+.|..++..|     .+.++.+.++++|
T Consensus       245 ~~y~~-tl~~w~~~~~~~~~~~~~~~~--~~~~~~w~~yl~~~~~~f~~~~~~~~q~~~~~  302 (302)
T 3hem_A          245 ANYVP-TLNAWADALQAHKDEAIALKG--QETCDIYMHYLRGCSDLFRDKYTDVCQFTLVK  302 (302)
T ss_dssp             GGHHH-HHHHHHHHHHHTHHHHHHHHC--HHHHHHHHHHHHHHHHHHHTTSSEEEEEEEEC
T ss_pred             hhHHH-HHHHHHHHHHHhHHHHHHHhC--HHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEC
Confidence            99888 899999999999999999887  78999999998887     4467889999886

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=100.00  E-value=2.3e-33  Score=238.90  Aligned_cols=266  Identities=17%  Similarity=0.250  Sum_probs=207.2

Q ss_pred             CCchhhHHhhhcCC-ccccccccc-CCceeEeeccCCCCCCcHHHHHHHHHHHHHHhC----CCCCCCeEEEeCCCCCHH
Q psy2408          29 NKGKKTVATLYDSP-EGQIGSVLF-GGHMHWGYWDESNSKDNFAQGSDKLSRIMINKT----SITKGQRFIDIGCGFGLS  102 (298)
Q Consensus        29 ~~~~~~~~~~yd~~-~~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~vLDiGcG~G~~  102 (298)
                      ....+.+++|||.. ...+|+..+ +..++++||........+..++.+..+.+++.+    .+.++.+|||+|||+|..
T Consensus        17 ~~~~~~~~~~Yd~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~   96 (297)
T 2o57_A           17 KTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGA   96 (297)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHTTSCCCSCCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHH
T ss_pred             HHHHHHHHHHcCCccchhHHHHHhCCCceEEEecCCCCCCcchHHHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHH
Confidence            34456789999986 248898776 467788999863225678889999999999998    888999999999999999


Q ss_pred             HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhc
Q psy2408         103 GIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRV  181 (298)
Q Consensus       103 ~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~  181 (298)
                      +..+++..+++|+|+|+|+.+++.+++++...++.++++++++|+.++|+++++||+|++..+++|++++ .+++++.++
T Consensus        97 ~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~  176 (297)
T 2o57_A           97 ARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARV  176 (297)
T ss_dssp             HHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHH
Confidence            9999987688999999999999999999998888888999999999999888999999999999999999 999999999


Q ss_pred             ccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccchHHHHHHHHHHHHH
Q psy2408         182 LKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKK  261 (298)
Q Consensus       182 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (298)
                      |+|||++++.++....... ......+........+.+..++.++|+++||+++....++..... .+......+.....
T Consensus       177 LkpgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  254 (297)
T 2o57_A          177 LKPRGVMAITDPMKEDGID-KSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVH-HYSKVKAELIKRSS  254 (297)
T ss_dssp             EEEEEEEEEEEEEECTTCC-GGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEECHHHHHH-HHHHHHHHHHHTHH
T ss_pred             cCCCeEEEEEEeccCCCCc-hHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEEECchhhHH-HHHHHHHHHHHhHH
Confidence            9999999999876554333 233344444444556778999999999999999999887765444 33333333333343


Q ss_pred             HHHhhCCChHHHHHHHHHHHh-----hccccccEEEEEEEeC
Q psy2408         262 EIYKSIPNPEKSIDNWLYLFK-----YMSKNLGYIIVTAKKI  298 (298)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~k~  298 (298)
                      .+....+  ..+.+.|...+.     ...+.++|.+++||||
T Consensus       255 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~Kp  294 (297)
T 2o57_A          255 EIASFCS--PEFQANMKRGLEHWIEGGRAGKLTWGGMLFRKS  294 (297)
T ss_dssp             HHTTTSC--HHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEES
T ss_pred             HHhccCC--HHHHHHHHHHHHHHHHhccCCeEEEEEEEEECC
Confidence            3333333  344444433322     2356799999999997

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=100.00  E-value=9.9e-32  Score=230.96  Aligned_cols=266  Identities=14%  Similarity=0.173  Sum_probs=211.0

Q ss_pred             cccCCCCchhhHHhhhcCCcccccccccCCcee--EeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCH
Q psy2408          24 KENKGNKGKKTVATLYDSPEGQIGSVLFGGHMH--WGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGL  101 (298)
Q Consensus        24 ~~~~~~~~~~~~~~~yd~~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~  101 (298)
                      .........+++.++||.. .++|..+++..+.  .++|..  +...+..++.+..+.+++.+.+.++.+|||+|||+|.
T Consensus        27 ~~~~~~~~~~~i~~~Yd~~-~~~~~~~~~~~~~y~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~  103 (318)
T 2fk8_A           27 SPTKTRTRFEDIQAHYDVS-DDFFALFQDPTRTYSCAYFEP--PELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGT  103 (318)
T ss_dssp             -----------CGGGGCCC-HHHHTTTSCTTCCCSCCCCSS--TTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSH
T ss_pred             ccCChhhhHHHHHHhcCCC-HHHHHHHcCCCCCcceeeeCC--CCCCHHHHHHHHHHHHHHhcCCCCcCEEEEEcccchH
Confidence            4456667788899999998 9999988877654  467875  4668889999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccC--hH-HHHHHH
Q psy2408         102 SGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMN--HS-AALNEA  178 (298)
Q Consensus       102 ~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~-~~l~~~  178 (298)
                      ++..+++..+++|+|+|+|+.+++.+++++...++.+++.++++|+.+++   ++||+|++..+++|++  ++ .+++++
T Consensus       104 ~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~  180 (318)
T 2fk8_A          104 TMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKRC  180 (318)
T ss_dssp             HHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHHHH
Confidence            99999986688999999999999999999998888778999999998874   7899999999999994  55 999999


Q ss_pred             hhcccCCcEEEEEeCCCCCCCCC-----h-----hHHHHHHHh--hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCccc
Q psy2408         179 RRVLKSGSILTLTDLPLLSVSKN-----D-----NKFKEYVKK--NIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMP  246 (298)
Q Consensus       179 ~r~LkpgG~l~i~~~~~~~~~~~-----~-----~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~  246 (298)
                      .++|+|||++++.++........     +     .....+...  .....+.+.+++.++++++||+++....++.++..
T Consensus       181 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y~~  260 (318)
T 2fk8_A          181 FNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIK  260 (318)
T ss_dssp             HHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCEECHHHHHH
T ss_pred             HHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCCCEEEEEEecchhHHH
Confidence            99999999999998875441110     0     000011111  12235668999999999999999999988888777


Q ss_pred             chHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhc-----cccccEEEEEEEeC
Q psy2408         247 LLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYM-----SKNLGYIIVTAKKI  298 (298)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~k~  298 (298)
                       +...|...+...++++....+  +.+.+.|..++..+     .+.++++.++++||
T Consensus       261 -~~~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~f~~g~~~~~~~~~~k~  314 (318)
T 2fk8_A          261 -TLRIWGDTLQSNKDKAIEVTS--EEVYNRYMKYLRGCEHYFTDEMLDCSLVTYLKP  314 (318)
T ss_dssp             -HHHHHHHHHHHTHHHHHHHSC--HHHHHHHHHHHHHHHHHHHTTSCEEEEEEEECT
T ss_pred             -HHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEeC
Confidence             888899999988888888776  67888898887665     44679999999997

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.97  E-value=4.8e-30  Score=214.70  Aligned_cols=222  Identities=22%  Similarity=0.302  Sum_probs=182.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ......+.+++.+.+.++.+|||+|||+|.++..+++..+++|+|+|+|+.+++.++++....   .+++++++|+.+++
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~  115 (266)
T 3ujc_A           39 GGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKE  115 (266)
T ss_dssp             THHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCC
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCC
Confidence            345667888888888899999999999999999999966889999999999999999886543   57999999999998


Q ss_pred             CCCCCeeEEEeccccccc--ChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHH
Q psy2408         152 FDNDSFDGGWFFESIFHM--NHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLN  228 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~--~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  228 (298)
                      +++++||+|++..+++|+  +++ .+++++.++|+|||++++.++...........+..... ..+..+++.+++.++++
T Consensus       116 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~  194 (266)
T 3ujc_A          116 FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVK-QRKYTLITVEEYADILT  194 (266)
T ss_dssp             CCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHH-HHTCCCCCHHHHHHHHH
T ss_pred             CCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHh-cCCCCCCCHHHHHHHHH
Confidence            888999999999999999  566 99999999999999999998765441111122222222 22445788999999999


Q ss_pred             hCCCcEEEEEeCCCCcccchHHHHHHHHHHHHHHHHhhCCC--hHHHHHHHHHHHhhc-cccccEEEEEEEeC
Q psy2408         229 KSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPN--PEKSIDNWLYLFKYM-SKNLGYIIVTAKKI  298 (298)
Q Consensus       229 ~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~a~k~  298 (298)
                      ++||++++...++.++.. ....|.+.+...+.++...+++  .+.....|...+..+ .+.++|.++++|||
T Consensus       195 ~~Gf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~Kp  266 (266)
T 3ujc_A          195 ACNFKNVVSKDLSDYWNQ-LLEVEHKYLHENKEEFLKLFSEKKFISLDDGWSRKIKDSKRKMQRWGYFKATKN  266 (266)
T ss_dssp             HTTCEEEEEEECHHHHHH-HHHHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEECC
T ss_pred             HcCCeEEEEEeCCHHHHH-HHHHHHHHHHhCHHHHHHhcCHHHHHHHHHHHHHHHHHHHcCcccceEEEEeCC
Confidence            999999999999888877 7888989998888888887774  334455687776655 66789999999998

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.96  E-value=5.7e-28  Score=201.20  Aligned_cols=220  Identities=19%  Similarity=0.263  Sum_probs=164.9

Q ss_pred             HHHHHHHHhC-CCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          75 KLSRIMINKT-SITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        75 ~~~~~l~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      .....++..+ .+.++.+|||+|||+|..+..+++..+.+|+|+|+|+.+++.+++++...+++++++++++|+.+++++
T Consensus        32 ~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (257)
T 3f4k_A           32 EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ  111 (257)
T ss_dssp             HHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC
T ss_pred             HHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC
Confidence            4455566666 567888999999999999999999766699999999999999999999999888899999999999888


Q ss_pred             CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCC
Q psy2408         154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGF  232 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  232 (298)
                      +++||+|++..+++|+ ++ .+++++.++|+|||++++.++.+..... .......... ..+.+.+.+++.++|+++||
T Consensus       112 ~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGf  188 (257)
T 3f4k_A          112 NEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSER-PAEIEDFWMD-AYPEISVIPTCIDKMERAGY  188 (257)
T ss_dssp             TTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCC-CHHHHHHHHH-HCTTCCBHHHHHHHHHHTTE
T ss_pred             CCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCC-hHHHHHHHHH-hCCCCCCHHHHHHHHHHCCC
Confidence            8999999999999999 56 9999999999999999999876554433 2222222222 23457789999999999999


Q ss_pred             cEEEEEeCCCCcc-cchHHHHHHHHHHHHHHHHhhCCC---hHHHHHHHHHHHhhccccccEEEEEEEeC
Q psy2408         233 ELIKIDDITSHVM-PLLVPKLTEATLTYKKEIYKSIPN---PEKSIDNWLYLFKYMSKNLGYIIVTAKKI  298 (298)
Q Consensus       233 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~k~  298 (298)
                      +++....++...+ ..+...+.......... .+..+.   .....+.|...+..+.+.++|+++++||+
T Consensus       189 ~~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~k~  257 (257)
T 3f4k_A          189 TPTAHFILPENCWTEHYFAPQDEVRETFMKE-HAGNKTAMDFMKGQQYERSLYSKYKDYYGYVFYIGQKR  257 (257)
T ss_dssp             EEEEEEECCGGGTCCCCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred             eEEEEEECChhhHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhCCccceEEEEEecC
Confidence            9999988887765 21222222222222111 111000   12233455556666688899999999995

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.96  E-value=6.1e-28  Score=200.89  Aligned_cols=218  Identities=15%  Similarity=0.192  Sum_probs=159.8

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ......++..+.+.++.+|||+|||+|..+..+++..+.+|+|+|+|+.+++.+++++...++.++++++++|+.++++ 
T Consensus        22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-  100 (256)
T 1nkv_A           22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-  100 (256)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-
Confidence            4556777888888899999999999999999999877889999999999999999999988887789999999999877 


Q ss_pred             CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCC
Q psy2408         154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGF  232 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  232 (298)
                      +++||+|++..+++|++++ .+++++.++|||||++++.++.+..... ...............+++..++.++|+++||
T Consensus       101 ~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  179 (256)
T 1nkv_A          101 NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPA-TEEIAQACGVSSTSDFLTLPGLVGAFDDLGY  179 (256)
T ss_dssp             SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCS-SHHHHHTTTCSCGGGSCCHHHHHHHHHTTTB
T ss_pred             CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCC-hHHHHHHHhcccccccCCHHHHHHHHHHCCC
Confidence            7899999999999999988 9999999999999999998876544332 1222221222223467788999999999999


Q ss_pred             cEEEEEeCCCCcccchHHH-HHHHHHHHHHHHHhhCCC---hHHHH---HHHHH-HHhhccccccEEEEEEEeC
Q psy2408         233 ELIKIDDITSHVMPLLVPK-LTEATLTYKKEIYKSIPN---PEKSI---DNWLY-LFKYMSKNLGYIIVTAKKI  298 (298)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~-~~~~~~~~~~~~~~~a~k~  298 (298)
                      .++.....+...+..+... |. .+..    .....+.   ....+   ..|.. +.....+.++|++++++|+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~  248 (256)
T 1nkv_A          180 DVVEMVLADQEGWDRYEAAKWL-TMRR----WLEANPDDDFAAEVRAELNIAPKRYVTYARECFGWGVFALIAR  248 (256)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHH-HHHH----HHTTCTTSTTHHHHHHHHHHHHHHHHHTHHHHEEEEEEEECBC
T ss_pred             eeEEEEeCCHHHHHHHHHHHHh-HHHH----HHHHCCCCccHHHHHHHHHHHHHHHHhcccccccchhhhhhHH
Confidence            9988766554433211111 21 1111    1111111   12222   23332 2233467799999999985

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.96  E-value=8.7e-27  Score=195.21  Aligned_cols=217  Identities=19%  Similarity=0.260  Sum_probs=160.3

Q ss_pred             HHHHHHHHhCC-CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          75 KLSRIMINKTS-ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        75 ~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      .....++..+. +.++.+|||||||+|.++..+++..+++|+|+|+|+.+++.+++++...+++++++++++|+.+++++
T Consensus        32 ~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  111 (267)
T 3kkz_A           32 EVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFR  111 (267)
T ss_dssp             HHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC
T ss_pred             HHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCC
Confidence            34555666665 67889999999999999999999756699999999999999999999999888899999999999888


Q ss_pred             CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCC
Q psy2408         154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGF  232 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  232 (298)
                      +++||+|++..+++|+ ++ .+++++.++|+|||++++.++.+..... .......... ..+.+.+.+++.++++++||
T Consensus       112 ~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGf  188 (267)
T 3kkz_A          112 NEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDER-PAEINDFWMD-AYPEIDTIPNQVAKIHKAGY  188 (267)
T ss_dssp             TTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCC-CHHHHHHHHH-HCTTCEEHHHHHHHHHHTTE
T ss_pred             CCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCC-hHHHHHHHHH-hCCCCCCHHHHHHHHHHCCC
Confidence            8999999999999999 66 9999999999999999999887544433 2222222211 23467788999999999999


Q ss_pred             cEEEEEeCCCCcc-cchHHHHHHHHHHHHHHHHhhCCC---h---HHHHHHHHHHHhhccccccEEEEEEEeC
Q psy2408         233 ELIKIDDITSHVM-PLLVPKLTEATLTYKKEIYKSIPN---P---EKSIDNWLYLFKYMSKNLGYIIVTAKKI  298 (298)
Q Consensus       233 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~a~k~  298 (298)
                      ++++...++...+ ..++..+....    ..+....+.   .   -...+.+...+..+.+.++|.+++++|.
T Consensus       189 ~~v~~~~~~~~~w~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~f~~~~~~  257 (267)
T 3kkz_A          189 LPVATFILPENCWTDHYFTPKVAAQ----KIFLTKYAGNKIAEEFSMLQSIEEELYHKYKEYYGYTFFIAKKI  257 (267)
T ss_dssp             EEEEEEECCGGGTTTTTHHHHHHHH----HHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred             EEEEEEECCHhHHHHHHHHHHHHHH----HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccccCeEeehhhHH
Confidence            9999998886544 21322222222    222222111   0   1111122233333456679999999984

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.95  E-value=5e-27  Score=201.00  Aligned_cols=210  Identities=18%  Similarity=0.273  Sum_probs=163.4

Q ss_pred             HHHHHHHHHHhCC-CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          73 SDKLSRIMINKTS-ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        73 ~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      .....+.+++.+. +.++.+|||+|||+|.++..+++..+++|+|+|+|+.+++.|++++...++.+++.++++|+.+++
T Consensus       101 ~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  180 (312)
T 3vc1_A          101 ESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP  180 (312)
T ss_dssp             HHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred             HHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC
Confidence            3444566788887 788999999999999999999996688999999999999999999999998888999999999998


Q ss_pred             CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhC
Q psy2408         152 FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKS  230 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  230 (298)
                      +++++||+|++..+++|+. + .+++++.++|+|||++++.++.......................+++.+++.++|+++
T Consensus       181 ~~~~~fD~V~~~~~l~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~a  259 (312)
T 3vc1_A          181 FDKGAVTASWNNESTMYVD-LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADN  259 (312)
T ss_dssp             CCTTCEEEEEEESCGGGSC-HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTT
T ss_pred             CCCCCEeEEEECCchhhCC-HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHC
Confidence            8889999999999999995 7 9999999999999999998876554321112222222333345678899999999999


Q ss_pred             CCcEEEEEeCCCCcccchHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhccccccEEEEEEEeC
Q psy2408         231 GFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYMSKNLGYIIVTAKKI  298 (298)
Q Consensus       231 Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~k~  298 (298)
                      ||+++....++..    +...|...+....     ..+..+.    |...+.  .+.++|++|+|+|+
T Consensus       260 Gf~~~~~~~~~~~----~~~~w~~~~~~~~-----~~g~~~~----~~~~~~--~~~~~y~~i~a~k~  312 (312)
T 3vc1_A          260 RLVPHTIVDLTPD----TLPYWELRATSSL-----VTGIEKA----FIESYR--DGSFQYVLIAADRV  312 (312)
T ss_dssp             TEEEEEEEECHHH----HHHHHHHHTTSTT-----CCSCHHH----HHHHHH--HTSEEEEEEEEEEC
T ss_pred             CCEEEEEEeCCHH----HHHHHHHHHHHhh-----hhcChHH----HHHHHH--hcCCcEEEEEEeeC
Confidence            9999999987743    4556655544221     1111223    332222  57899999999995

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.93  E-value=1.2e-24  Score=183.87  Aligned_cols=164  Identities=18%  Similarity=0.214  Sum_probs=130.0

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-CCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-FDND  155 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~  155 (298)
                      ...++..+.. ++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...++..++.++++|+.+++ ++++
T Consensus        58 l~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  135 (285)
T 4htf_A           58 LDRVLAEMGP-QKLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET  135 (285)
T ss_dssp             HHHHHHHTCS-SCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred             HHHHHHhcCC-CCCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence            4456666654 3679999999999999999995 88999999999999999999998888778999999999886 6779


Q ss_pred             CeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCCh---hHHHHHHH--------hhcccCCCCcchH
Q psy2408         156 SFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKND---NKFKEYVK--------KNIHSNFILVEHY  223 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~  223 (298)
                      +||+|++..+++|++++ .+++++.++|+|||++++..++........   ..+.....        ......+++.+++
T Consensus       136 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  215 (285)
T 4htf_A          136 PVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQV  215 (285)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHH
T ss_pred             CceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHH
Confidence            99999999999999999 999999999999999999877632210000   00011111        1112356788999


Q ss_pred             HHHHHhCCCcEEEEEeCCC
Q psy2408         224 PDLLNKSGFELIKIDDITS  242 (298)
Q Consensus       224 ~~~l~~~Gf~~~~~~~~~~  242 (298)
                      ..+|+++||++++...+..
T Consensus       216 ~~~l~~aGf~v~~~~~~~~  234 (285)
T 4htf_A          216 YLWLEEAGWQIMGKTGVRV  234 (285)
T ss_dssp             HHHHHHTTCEEEEEEEESS
T ss_pred             HHHHHHCCCceeeeeeEEE
Confidence            9999999999999887653

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.92  E-value=1.3e-24  Score=181.29  Aligned_cols=163  Identities=21%  Similarity=0.285  Sum_probs=131.3

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS  156 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  156 (298)
                      ...+++.+.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...+++ ++.++++|+.++|+++++
T Consensus        26 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~~~  103 (260)
T 1vl5_A           26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPFTDER  103 (260)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCSCTTC
T ss_pred             HHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCCCCCCC
Confidence            556677777788999999999999999999985 469999999999999999999888765 699999999999988899


Q ss_pred             eeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHH---HhhcccCCCCcchHHHHHHhCCC
Q psy2408         157 FDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYV---KKNIHSNFILVEHYPDLLNKSGF  232 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~Gf  232 (298)
                      ||+|++..+++|++++ .+++++.++|+|||++++.+........ ...+....   ....+..+++.+++.++|+++||
T Consensus       104 fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  182 (260)
T 1vl5_A          104 FHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDA-FDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGF  182 (260)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHH-HHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTC
T ss_pred             EEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHH-HHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCC
Confidence            9999999999999999 9999999999999999998765433211 01111111   11223456788999999999999


Q ss_pred             cEEEEEeCCC
Q psy2408         233 ELIKIDDITS  242 (298)
Q Consensus       233 ~~~~~~~~~~  242 (298)
                      .++.......
T Consensus       183 ~~~~~~~~~~  192 (260)
T 1vl5_A          183 ELEELHCFHK  192 (260)
T ss_dssp             EEEEEEEEEE
T ss_pred             eEEEEEEeec
Confidence            9888776543

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.92  E-value=3.1e-24  Score=178.36  Aligned_cols=159  Identities=18%  Similarity=0.220  Sum_probs=123.7

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK---GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ...+++.. ++++.+|||+|||+|..+..+++..   +++|+|+|+|+.|++.|++++...+...+++++++|+.++|+ 
T Consensus        60 i~~l~~~~-~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~-  137 (261)
T 4gek_A           60 IGMLAERF-VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-  137 (261)
T ss_dssp             HHHHHHHH-CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-
T ss_pred             HHHHHHHh-CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-
Confidence            33344433 4789999999999999999999863   679999999999999999999988888889999999999876 


Q ss_pred             CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh-------------------
Q psy2408         154 NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK-------------------  211 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-------------------  211 (298)
                       ++||+|++..+++|++++   .+|++++++|||||+|++.+...................                   
T Consensus       138 -~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l  216 (261)
T 4gek_A          138 -ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSML  216 (261)
T ss_dssp             -CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHH
T ss_pred             -cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhh
Confidence             469999999999999876   789999999999999999987654422101111111000                   


Q ss_pred             hcccCCCCcchHHHHHHhCCCcEEEEE
Q psy2408         212 NIHSNFILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       212 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                      .......+.+++.++|+++||..+++.
T Consensus       217 ~~~~~~~s~~~~~~~L~~AGF~~ve~~  243 (261)
T 4gek_A          217 ENVMLTDSVETHKARLHKAGFEHSELW  243 (261)
T ss_dssp             HHHCCCBCHHHHHHHHHHHTCSEEEEE
T ss_pred             cccccCCCHHHHHHHHHHcCCCeEEEE
Confidence            011234678889999999999988753

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.92  E-value=6.8e-24  Score=178.29  Aligned_cols=227  Identities=12%  Similarity=0.090  Sum_probs=164.2

Q ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHH------HHHHHHHHHHhcCCCC
Q psy2408          67 DNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKF------QQESAMKTAKAEGLLD  138 (298)
Q Consensus        67 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~------~l~~a~~~~~~~~~~~  138 (298)
                      ..+..++.+....+++.+.+.++.+|||||||+|.++..+++..+  .+|+|+|+|+.      +++.+++++...++.+
T Consensus        22 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~  101 (275)
T 3bkx_A           22 RTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGD  101 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGG
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCC
Confidence            356677888889999999889999999999999999999998754  79999999997      9999999999888767


Q ss_pred             ceEEEECC---CCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCCh--hHHHHHHH--
Q psy2408         139 KVNFLHGD---ALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKND--NKFKEYVK--  210 (298)
Q Consensus       139 ~i~~~~~d---~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~--~~~~~~~~--  210 (298)
                      +++++++|   ...+++++++||+|++..+++|++++ .+++.+.++++|||++++.++.........  .....+..  
T Consensus       102 ~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (275)
T 3bkx_A          102 RLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGL  181 (275)
T ss_dssp             GEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHH
T ss_pred             ceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHH
Confidence            89999998   44456677899999999999999999 877777778888999999988765432200  00111111  


Q ss_pred             --------hhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccchHHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHH
Q psy2408         211 --------KNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKS-IPNPEKSIDNWLYLF  281 (298)
Q Consensus       211 --------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  281 (298)
                              ......+++.+++.++++++||+++....+......  ...|...+.......... .+..+.+++.|..+.
T Consensus       182 ~~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~~~~~~~--~~~W~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  259 (275)
T 3bkx_A          182 LYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIVEDPTLD--DAHWEIATTNALLTELKLSTDLRDRVKPLLEAMS  259 (275)
T ss_dssp             HHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCBCCTTCT--HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred             HhhccccccccccccCCHHHHHHHHHHCCCeeEEEEEecCCCCC--CchhhHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence                    011224678999999999999999988877333222  235655443322221111 111467888899865


Q ss_pred             hhccccccEEEEEE
Q psy2408         282 KYMSKNLGYIIVTA  295 (298)
Q Consensus       282 ~~~~~~~~~~~~~a  295 (298)
                      ..+...++.+++++
T Consensus       260 ~~g~~~~~~~~~~~  273 (275)
T 3bkx_A          260 HNGTASLATFTGRI  273 (275)
T ss_dssp             TSCCCCCCEEEEEE
T ss_pred             hccccccceeeEEE
Confidence            54444565555543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.92  E-value=4.4e-24  Score=176.58  Aligned_cols=195  Identities=13%  Similarity=0.086  Sum_probs=140.1

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      .++.+|||||||+|.++..+++ .+.+|+|+|+|+.+++.|++++..     +++++++|+.++ +++++||+|++.+++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~-~~~~~fD~v~~~~~l  113 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQE-HFNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA-QLPRRYDNIVLTHVL  113 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTT-TCSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC-CCSSCEEEEEEESCG
T ss_pred             cCCCcEEEECCCCCHHHHHHHH-hCCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc-CcCCcccEEEEhhHH
Confidence            4677999999999999999998 466999999999999999988542     689999999887 467899999999999


Q ss_pred             cccChH-HHHHHHh-hcccCCcEEEEEeCCCCCCCC----------ChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcE
Q psy2408         167 FHMNHS-AALNEAR-RVLKSGSILTLTDLPLLSVSK----------NDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFEL  234 (298)
Q Consensus       167 ~~~~~~-~~l~~~~-r~LkpgG~l~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  234 (298)
                      +|++++ .+++++. ++|+|||++++.+++......          ....+........+..+++.+++.++|+++||++
T Consensus       114 ~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  193 (250)
T 2p7i_A          114 EHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV  193 (250)
T ss_dssp             GGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred             HhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeE
Confidence            999999 9999999 999999999998876432100          0000000011223446789999999999999999


Q ss_pred             EEEEeCCCCcccchHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhccccccEEEEEEEeC
Q psy2408         235 IKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYMSKNLGYIIVTAKKI  298 (298)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~k~  298 (298)
                      +....+......   ..|....   ..  ...+  ...+...|..+........+.+.++++|+
T Consensus       194 ~~~~~~~~~p~~---~~~~~~~---~~--~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~k~  247 (250)
T 2p7i_A          194 TYRSGIFFKALA---NFQWDQI---LQ--TDIL--SKEYLDGCYQLGQQYPDLCASIFLLCEKG  247 (250)
T ss_dssp             EEEEEEEECCSC---HHHHHHH---HH--TTSS--CHHHHHHHHHHHTTCGGGEEEEEEEEECC
T ss_pred             EEEeeeEecCCc---hHHHHHh---hh--cchh--hHHHHHHHHHhccccchhhHHHHHHhccc
Confidence            998765443222   2222110   00  0012  24555556655444455678888899885

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.92  E-value=1e-24  Score=182.03  Aligned_cols=165  Identities=18%  Similarity=0.223  Sum_probs=124.4

Q ss_pred             HHHHHHHHH-hCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          74 DKLSRIMIN-KTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        74 ~~~~~~l~~-~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      ..+.+.+.. ...+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++ . +...++.++++|+.++++
T Consensus        24 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~~~  100 (263)
T 2yqz_A           24 GQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAIPL  100 (263)
T ss_dssp             HHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSCCS
T ss_pred             HHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccCCC
Confidence            444445544 335577889999999999999999984 789999999999999999987 2 233579999999999988


Q ss_pred             CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCC----hhHHHHHHHhhc-----ccCCCCcch
Q psy2408         153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKN----DNKFKEYVKKNI-----HSNFILVEH  222 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~----~~~~~~~~~~~~-----~~~~~~~~~  222 (298)
                      ++++||+|++..+++|++++ .+++++.++|+|||++++. +.... ...    ...+........     ...+++.++
T Consensus       101 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (263)
T 2yqz_A          101 PDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG-WDQAE-ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKE  178 (263)
T ss_dssp             CTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE-EEEEC-CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH
T ss_pred             CCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE-ecCCC-ccHHHHHHHHHHHHHHHhCCCcccccccCCHHH
Confidence            88999999999999999999 9999999999999999987 22111 110    011122222211     123566788


Q ss_pred             HHHHHHhCCCcEEEEEeCCCC
Q psy2408         223 YPDLLNKSGFELIKIDDITSH  243 (298)
Q Consensus       223 ~~~~l~~~Gf~~~~~~~~~~~  243 (298)
                      +.++|+++||.++........
T Consensus       179 ~~~~l~~~Gf~~~~~~~~~~~  199 (263)
T 2yqz_A          179 VEEALRRLGLKPRTREVARWR  199 (263)
T ss_dssp             HHHHHHHTTCCCEEEEEEEEE
T ss_pred             HHHHHHHcCCCcceEEEeeee
Confidence            999999999998776544433

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.92  E-value=1.8e-24  Score=175.44  Aligned_cols=169  Identities=24%  Similarity=0.284  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      ...+.+.+++.+...++ +|||+|||+|.++..+++..+.+++|+|+|+.+++.+++++...++.+++.++++|+.++++
T Consensus        29 ~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  107 (219)
T 3dlc_A           29 YPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI  107 (219)
T ss_dssp             HHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS
T ss_pred             cHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC
Confidence            34566777788777766 99999999999999999975779999999999999999999998887789999999999988


Q ss_pred             CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh---------hcccCCCCcch
Q psy2408         153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK---------NIHSNFILVEH  222 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~  222 (298)
                      ++++||+|++..+++|++++ .+++++.++|+|||++++.+........  .........         .....+++.++
T Consensus       108 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (219)
T 3dlc_A          108 EDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELR--DSISAEMIRKNPDWKEFNRKNISQENVER  185 (219)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHH--HHHHHHHHHHCTTHHHHHHHHSSHHHHHH
T ss_pred             CcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHH--HHHHHHHHHhHHHHHhhhhhccccCCHHH
Confidence            88999999999999999999 9999999999999999998755433111  111110000         01234557799


Q ss_pred             HHHHHHhCCCcEEEEEeCCCCc
Q psy2408         223 YPDLLNKSGFELIKIDDITSHV  244 (298)
Q Consensus       223 ~~~~l~~~Gf~~~~~~~~~~~~  244 (298)
                      +.++|+++||++++........
T Consensus       186 ~~~~l~~aGf~~v~~~~~~~~~  207 (219)
T 3dlc_A          186 FQNVLDEIGISSYEIILGDEGF  207 (219)
T ss_dssp             HHHHHHHHTCSSEEEEEETTEE
T ss_pred             HHHHHHHcCCCeEEEEecCCce
Confidence            9999999999998877554443

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.91  E-value=5.6e-24  Score=177.48  Aligned_cols=156  Identities=22%  Similarity=0.292  Sum_probs=125.8

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      .+.+.+++.+.+.++.+|||+|||+|.++..+++ .+.+|+|+|+|+.+++.++...       +++++++|+.++++++
T Consensus        21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~   92 (261)
T 3ege_A           21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALPD   92 (261)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSCT
T ss_pred             HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCCC
Confidence            4567777777778899999999999999999998 7889999999999998876542       6999999999999888


Q ss_pred             CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCCh--hHHHHHHHhhcccCCCCcchHHHHHHhCC
Q psy2408         155 DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKND--NKFKEYVKKNIHSNFILVEHYPDLLNKSG  231 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  231 (298)
                      ++||+|++..+++|++++ .+++++.++|| ||++++.++.........  ..+... ....+..+.+.+++. +|+++|
T Consensus        93 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~aG  169 (261)
T 3ege_A           93 KSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFL-WEDALRFLPLDEQIN-LLQENT  169 (261)
T ss_dssp             TCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHH-HHHHHTSCCHHHHHH-HHHHHH
T ss_pred             CCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHH-hhhhhhhCCCHHHHH-HHHHcC
Confidence            999999999999999999 99999999999 999998887644322100  111111 122235566778888 999999


Q ss_pred             CcEEEEEeCC
Q psy2408         232 FELIKIDDIT  241 (298)
Q Consensus       232 f~~~~~~~~~  241 (298)
                      |.++....+.
T Consensus       170 F~~v~~~~~~  179 (261)
T 3ege_A          170 KRRVEAIPFL  179 (261)
T ss_dssp             CSEEEEEECC
T ss_pred             CCceeEEEec
Confidence            9999887763

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.91  E-value=3.2e-23  Score=174.57  Aligned_cols=156  Identities=19%  Similarity=0.227  Sum_probs=122.3

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD  158 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  158 (298)
                      .+++.+.+.++.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.++++.      .++.++++|+..+++ +++||
T Consensus        48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~~~fD  119 (279)
T 3ccf_A           48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRV-DKPLD  119 (279)
T ss_dssp             HHHHHHCCCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCC-SSCEE
T ss_pred             HHHHHhCCCCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCc-CCCcC
Confidence            455666667889999999999999999998 7889999999999999998774      368899999999886 57999


Q ss_pred             EEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhh--------cccCCCCcchHHHHHHh
Q psy2408         159 GGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKN--------IHSNFILVEHYPDLLNK  229 (298)
Q Consensus       159 ~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~  229 (298)
                      +|++..+++|++++ .+++++.++|+|||++++..+...........+.......        ....+.+.+++.++|++
T Consensus       120 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (279)
T 3ccf_A          120 AVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEK  199 (279)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHH
T ss_pred             EEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHH
Confidence            99999999999999 9999999999999999998765432101001111111111        11245688999999999


Q ss_pred             CCCcEEEEEeCCC
Q psy2408         230 SGFELIKIDDITS  242 (298)
Q Consensus       230 ~Gf~~~~~~~~~~  242 (298)
                      +||+++.......
T Consensus       200 aGf~~~~~~~~~~  212 (279)
T 3ccf_A          200 QGFDVTYAALFNR  212 (279)
T ss_dssp             HTEEEEEEEEEEC
T ss_pred             cCCEEEEEEEecc
Confidence            9999988765543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.91  E-value=2.1e-23  Score=171.75  Aligned_cols=165  Identities=22%  Similarity=0.279  Sum_probs=135.0

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ......+++.+.+.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...+++ ++.++++|+..++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~   84 (239)
T 1xxl_A            7 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFP   84 (239)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSC
T ss_pred             CCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCCCC
Confidence            445667778888899999999999999999999984 569999999999999999999887764 699999999999888


Q ss_pred             CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHH---HhhcccCCCCcchHHHHHHh
Q psy2408         154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYV---KKNIHSNFILVEHYPDLLNK  229 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~  229 (298)
                      +++||+|++..+++|++++ .+++++.++|+|||++++.+........ ...+....   ....+...++.+++.++|++
T Consensus        85 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  163 (239)
T 1xxl_A           85 DDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPV-LDEFVNHLNRLRDPSHVRESSLSEWQAMFSA  163 (239)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHH-HHHHHHHHHHHHCTTCCCCCBHHHHHHHHHH
T ss_pred             CCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChh-HHHHHHHHHHhccccccCCCCHHHHHHHHHH
Confidence            8999999999999999999 9999999999999999998776433211 11111111   11233466788999999999


Q ss_pred             CCCcEEEEEeCC
Q psy2408         230 SGFELIKIDDIT  241 (298)
Q Consensus       230 ~Gf~~~~~~~~~  241 (298)
                      +||.++......
T Consensus       164 aGf~~~~~~~~~  175 (239)
T 1xxl_A          164 NQLAYQDIQKWN  175 (239)
T ss_dssp             TTEEEEEEEEEE
T ss_pred             CCCcEEEEEeec
Confidence            999988877654

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.91  E-value=4.3e-24  Score=173.55  Aligned_cols=156  Identities=15%  Similarity=0.179  Sum_probs=121.6

Q ss_pred             HHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeE
Q psy2408          80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDG  159 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  159 (298)
                      +++.+...++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.+++++.     .+++++++|+.+++++ ++||+
T Consensus        37 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~-~~fD~  109 (220)
T 3hnr_A           37 ILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP-TSIDT  109 (220)
T ss_dssp             HHHHHHHTCCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC-SCCSE
T ss_pred             HHHHhhccCCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC-CCeEE
Confidence            344444457889999999999999999985 7899999999999999998864     4689999999999877 89999


Q ss_pred             EEecccccccChH-H--HHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHH--------HHhhcccCCCCcchHHHHHH
Q psy2408         160 GWFFESIFHMNHS-A--ALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEY--------VKKNIHSNFILVEHYPDLLN  228 (298)
Q Consensus       160 V~~~~~l~~~~~~-~--~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~  228 (298)
                      |++..+++|++++ .  +++++.++|+|||.+++.++...............        ........+++.+++.++|+
T Consensus       110 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  189 (220)
T 3hnr_A          110 IVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFE  189 (220)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHH
T ss_pred             EEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHH
Confidence            9999999999998 5  99999999999999999986643321100001111        11112234568899999999


Q ss_pred             hCCCcEEEEEeCCC
Q psy2408         229 KSGFELIKIDDITS  242 (298)
Q Consensus       229 ~~Gf~~~~~~~~~~  242 (298)
                      ++||+++.......
T Consensus       190 ~aGf~v~~~~~~~~  203 (220)
T 3hnr_A          190 NNGFHVTFTRLNHF  203 (220)
T ss_dssp             HTTEEEEEEECSSS
T ss_pred             HCCCEEEEeeccce
Confidence            99999887765433

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.91  E-value=2.9e-24  Score=176.31  Aligned_cols=163  Identities=18%  Similarity=0.189  Sum_probs=126.0

Q ss_pred             HHHHHHHHhCC-CCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          75 KLSRIMINKTS-ITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        75 ~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      ...+.++..+. ..++.+|||+|||+|..+..+++.. +.+++|+|+|+.+++.+++++...+   ++.++++|+.++++
T Consensus        30 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~  106 (234)
T 3dtn_A           30 DFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDF  106 (234)
T ss_dssp             HHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCC
T ss_pred             HHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCC
Confidence            33455566654 4577899999999999999999974 7899999999999999999876543   79999999999887


Q ss_pred             CCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHH------------------Hh
Q psy2408         153 DNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYV------------------KK  211 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~------------------~~  211 (298)
                      + ++||+|++..+++|++++   .+++++.++|+|||++++.+.................                  ..
T Consensus       107 ~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (234)
T 3dtn_A          107 E-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYER  185 (234)
T ss_dssp             C-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC--
T ss_pred             C-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            6 899999999999999887   5999999999999999999876543211000000000                  11


Q ss_pred             hcccCCCCcchHHHHHHhCCCcEEEEEeCC
Q psy2408         212 NIHSNFILVEHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       212 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                      ......++.+++.++|+++||++++.....
T Consensus       186 ~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~  215 (234)
T 3dtn_A          186 SKLDKDIEMNQQLNWLKEAGFRDVSCIYKY  215 (234)
T ss_dssp             --CCCCCBHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cccccccCHHHHHHHHHHcCCCceeeeeee
Confidence            123456788999999999999999865443

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.91  E-value=5.4e-24  Score=175.48  Aligned_cols=190  Identities=21%  Similarity=0.386  Sum_probs=130.1

Q ss_pred             hhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC
Q psy2408          32 KKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG  111 (298)
Q Consensus        32 ~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~  111 (298)
                      .+.+.++||.. +..|+.....     .|...        ....+...+...+  +++.+|||+|||+|.++..+++. +
T Consensus        13 ~~~~~~~~~~~-a~~~~~~~~~-----~~~~~--------~~~~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~-~   75 (242)
T 3l8d_A           13 HESAEKKWDSS-AEFWNQNSQE-----MWDSG--------SRSTIIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRT-G   75 (242)
T ss_dssp             --------------------CH-----HHHTS--------TTTTHHHHHHHHS--CTTCEEEEETCTTSHHHHHHHHT-T
T ss_pred             HHHHHHHHHhH-HHHhhhhhhh-----ccCcc--------cHHHHHHHHHHHc--CCCCeEEEEcCCCCHHHHHHHHc-C
Confidence            34567888887 7777654221     22221        0122344444444  47789999999999999999995 8


Q ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEE
Q psy2408         112 CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTL  190 (298)
Q Consensus       112 ~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i  190 (298)
                      .+|+|+|+|+.+++.++++.    ...+++++++|+.++++++++||+|++..+++|++++ .+++++.++|+|||++++
T Consensus        76 ~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i  151 (242)
T 3l8d_A           76 YKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACI  151 (242)
T ss_dssp             CEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             CeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEE
Confidence            89999999999999998774    2256999999999998888999999999999999999 999999999999999999


Q ss_pred             EeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCC
Q psy2408         191 TDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSH  243 (298)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  243 (298)
                      .++....... ...+........+...++.+++..+++++||++++...+...
T Consensus       152 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  203 (242)
T 3l8d_A          152 AILGPTAKPR-ENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVYKR  203 (242)
T ss_dssp             EEECTTCGGG-GGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEEEECT
T ss_pred             EEcCCcchhh-hhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeeccccc
Confidence            9866443222 112222222233455688899999999999999988765433

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.91  E-value=4.7e-23  Score=167.29  Aligned_cols=155  Identities=17%  Similarity=0.213  Sum_probs=133.3

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC
Q psy2408          78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND  155 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  155 (298)
                      ..+++.+.+.++.+|||+|||+|.++..+++..  ..+|+|+|+|+.+++.+++++...+++ ++.++++|+.+++++++
T Consensus        27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~  105 (219)
T 3dh0_A           27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDN  105 (219)
T ss_dssp             HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCSS
T ss_pred             HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCCC
Confidence            456666777889999999999999999999864  479999999999999999999888875 79999999999888889


Q ss_pred             CeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcE
Q psy2408         156 SFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFEL  234 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  234 (298)
                      +||+|++..+++|++++ .+++++.++|+|||++++.++.......          .......++.+++..+++++||++
T Consensus       106 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~Gf~~  175 (219)
T 3dh0_A          106 TVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDK----------GPPPEEVYSEWEVGLILEDAGIRV  175 (219)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSS----------SCCGGGSCCHHHHHHHHHHTTCEE
T ss_pred             CeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccccccc----------CCchhcccCHHHHHHHHHHCCCEE
Confidence            99999999999999999 9999999999999999999876544322          111334678899999999999999


Q ss_pred             EEEEeCCCC
Q psy2408         235 IKIDDITSH  243 (298)
Q Consensus       235 ~~~~~~~~~  243 (298)
                      ++...++..
T Consensus       176 ~~~~~~~~~  184 (219)
T 3dh0_A          176 GRVVEVGKY  184 (219)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEeeCCc
Confidence            998877655

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=1.2e-22  Score=169.02  Aligned_cols=155  Identities=17%  Similarity=0.114  Sum_probs=122.7

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      +....+++.+.+.++.+|||+|||+|.++..+++.. +.+++++|+|+.+++.++++.      .++.++++|+.+++ +
T Consensus        20 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~-~   92 (259)
T 2p35_A           20 RPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL------PNTNFGKADLATWK-P   92 (259)
T ss_dssp             HHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS------TTSEEEECCTTTCC-C
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------CCcEEEECChhhcC-c
Confidence            345567888888888999999999999999999864 789999999999999998872      46899999999988 6


Q ss_pred             CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh-----------hcccCCCCcc
Q psy2408         154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK-----------NIHSNFILVE  221 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~  221 (298)
                      +++||+|++..+++|++++ .+++++.++|+|||++++..+....... ..........           .....+.+.+
T Consensus        93 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (259)
T 2p35_A           93 AQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPT-HIAMHETADGGPWKDAFSGGGLRRKPLPPPS  171 (259)
T ss_dssp             SSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHH-HHHHHHHHHHSTTGGGC-------CCCCCHH
T ss_pred             cCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHH-HHHHHHHhcCcchHHHhccccccccCCCCHH
Confidence            7899999999999999999 9999999999999999998865322110 1111111111           1133567889


Q ss_pred             hHHHHHHhCCCcEEEE
Q psy2408         222 HYPDLLNKSGFELIKI  237 (298)
Q Consensus       222 ~~~~~l~~~Gf~~~~~  237 (298)
                      ++.++|+++||.+...
T Consensus       172 ~~~~~l~~aGf~v~~~  187 (259)
T 2p35_A          172 DYFNALSPKSSRVDVW  187 (259)
T ss_dssp             HHHHHHGGGEEEEEEE
T ss_pred             HHHHHHHhcCCceEEE
Confidence            9999999999975443

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.90  E-value=1.2e-23  Score=168.76  Aligned_cols=179  Identities=21%  Similarity=0.221  Sum_probs=138.2

Q ss_pred             hhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC
Q psy2408          33 KTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC  112 (298)
Q Consensus        33 ~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~  112 (298)
                      +.++++|+.. +..|+..+......        ..    ....+...++..    .+.+|||+|||+|.++..+++. +.
T Consensus         3 ~~~~~~y~~~-a~~y~~~~~~~~~~--------~~----~~~~~l~~~~~~----~~~~vLDiGcG~G~~~~~l~~~-~~   64 (203)
T 3h2b_A            3 DDVSKAYSSP-TFDAEALLGTVISA--------ED----PDRVLIEPWATG----VDGVILDVGSGTGRWTGHLASL-GH   64 (203)
T ss_dssp             CHHHHHHHCT-TTCHHHHTCSSCCT--------TC----TTHHHHHHHHHH----CCSCEEEETCTTCHHHHHHHHT-TC
T ss_pred             HHHHHHHhhH-HHHHHHHhhhhccc--------cH----HHHHHHHHHhcc----CCCeEEEecCCCCHHHHHHHhc-CC
Confidence            4678999999 88887765332110        01    112233333333    2779999999999999999985 78


Q ss_pred             eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccC--hH-HHHHHHhhcccCCcEEE
Q psy2408         113 RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMN--HS-AALNEARRVLKSGSILT  189 (298)
Q Consensus       113 ~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~-~~l~~~~r~LkpgG~l~  189 (298)
                      +++|+|+|+.+++.++++.      .++.++++|+.++++++++||+|++..+++|++  +. .+++++.++|+|||+++
T Consensus        65 ~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~  138 (203)
T 3h2b_A           65 QIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLL  138 (203)
T ss_dssp             CEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEE
T ss_pred             eEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEE
Confidence            9999999999999999873      368999999999888889999999999999997  66 99999999999999999


Q ss_pred             EEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCC
Q psy2408         190 LTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITS  242 (298)
Q Consensus       190 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  242 (298)
                      +..+.......       +........+++.+++.++|+++||+++.....+.
T Consensus       139 i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  184 (203)
T 3h2b_A          139 MSFFSGPSLEP-------MYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR  184 (203)
T ss_dssp             EEEECCSSCEE-------ECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred             EEEccCCchhh-------hhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence            98876543111       00111233467899999999999999999887765

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.90  E-value=7.8e-22  Score=165.79  Aligned_cols=173  Identities=24%  Similarity=0.440  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC
Q psy2408          70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL  148 (298)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~  148 (298)
                      ......+...+.....+.++.+|||||||+|.++..+++.. +.+|+++|+|+.+++.+++++...+++ ++.++..|+.
T Consensus        19 ~~~~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~   97 (276)
T 3mgg_A           19 SEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIF   97 (276)
T ss_dssp             ----CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGG
T ss_pred             HHHHHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccc
Confidence            33445566666666777889999999999999999999874 679999999999999999999988874 6999999999


Q ss_pred             CCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCC---CCChhHHH---HHH--HhhcccCCCC
Q psy2408         149 NLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSV---SKNDNKFK---EYV--KKNIHSNFIL  219 (298)
Q Consensus       149 ~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~---~~~~~~~~---~~~--~~~~~~~~~~  219 (298)
                      .+++++++||+|++..+++|++++ .+++++.++|+|||++++.+......   ........   .+.  .........+
T Consensus        98 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (276)
T 3mgg_A           98 SLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLV  177 (276)
T ss_dssp             GCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTG
T ss_pred             cCCCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcch
Confidence            998888999999999999999999 99999999999999999987653221   11011111   111  1122345667


Q ss_pred             cchHHHHHHhCCCcEEEEEeCCCC
Q psy2408         220 VEHYPDLLNKSGFELIKIDDITSH  243 (298)
Q Consensus       220 ~~~~~~~l~~~Gf~~~~~~~~~~~  243 (298)
                      ..++..+|+++||++++.......
T Consensus       178 ~~~l~~~l~~aGf~~v~~~~~~~~  201 (276)
T 3mgg_A          178 GRQIYPLLQESGFEKIRVEPRMVY  201 (276)
T ss_dssp             GGGHHHHHHHTTCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHCCCCeEEEeeEEEE
Confidence            789999999999999988865433

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.90  E-value=4.7e-23  Score=169.73  Aligned_cols=177  Identities=16%  Similarity=0.155  Sum_probs=134.5

Q ss_pred             HHHHHHHhCC-CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CC
Q psy2408          76 LSRIMINKTS-ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PF  152 (298)
Q Consensus        76 ~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~  152 (298)
                      +...+...+. +.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++         +.++.+|+.++  ++
T Consensus        28 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~   97 (240)
T 3dli_A           28 VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSL   97 (240)
T ss_dssp             HHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTS
T ss_pred             HHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhc
Confidence            3333433332 356789999999999999999884 88999999999999998754         67899998775  77


Q ss_pred             CCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHh
Q psy2408         153 DNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNK  229 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  229 (298)
                      ++++||+|++..+++|++++   .+++++.++|+|||++++..+....    ............+..+++.+++..++++
T Consensus        98 ~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~l~~  173 (240)
T 3dli_A           98 PDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS----LYSLINFYIDPTHKKPVHPETLKFILEY  173 (240)
T ss_dssp             CTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS----HHHHHHHTTSTTCCSCCCHHHHHHHHHH
T ss_pred             CCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch----hHHHHHHhcCccccccCCHHHHHHHHHH
Confidence            78999999999999999954   9999999999999999998876332    1222222222345567888999999999


Q ss_pred             CCCcEEEEEeCC----------CCcccchHHHHHHH-HHHHHHHHHhh-CC
Q psy2408         230 SGFELIKIDDIT----------SHVMPLLVPKLTEA-TLTYKKEIYKS-IP  268 (298)
Q Consensus       230 ~Gf~~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~-~~  268 (298)
                      +||+++....+.          .+ .. ....|.+. +...++.+... ++
T Consensus       174 aGf~~~~~~~~~~~~~~~~l~~~~-~~-~l~~w~~~~~~~~~~~~~~~~f~  222 (240)
T 3dli_A          174 LGFRDVKIEFFEECEELTKLAKID-SN-TVSEEVIRVINENIEKLNRILFG  222 (240)
T ss_dssp             HTCEEEEEEEECCCCTTTSCCCCC-CS-SSCHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCeEEEEEEeccCcccccccccc-cc-cccHHHHHhhhhhHHHHHhhccC
Confidence            999999888766          33 22 45567666 66666665554 54

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.89  E-value=1.2e-22  Score=168.68  Aligned_cols=187  Identities=16%  Similarity=0.089  Sum_probs=143.2

Q ss_pred             hhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC
Q psy2408          32 KKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG  111 (298)
Q Consensus        32 ~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~  111 (298)
                      .....++|+.. ...|+...+..            ..+..........++..+...++.+|||+|||+|.++..+++...
T Consensus        50 ~~~~~~~w~~~-~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~  116 (254)
T 1xtp_A           50 YGKALEYWRTV-PATVSGVLGGM------------DHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY  116 (254)
T ss_dssp             HHHHHHHHHTS-CSSHHHHTTTC------------GGGHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC
T ss_pred             hhhhhhHHhcC-CccccceecCc------------CccCHHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhc
Confidence            44567777776 66665554321            122344555667788888777889999999999999999988655


Q ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccCh--H-HHHHHHhhcccCCcEE
Q psy2408         112 CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH--S-AALNEARRVLKSGSIL  188 (298)
Q Consensus       112 ~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~-~~l~~~~r~LkpgG~l  188 (298)
                      .+|+++|+|+.+++.+++++...   .++.++++|+..+++++++||+|++..+++|+++  . .+++++.++|+|||++
T Consensus       117 ~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l  193 (254)
T 1xtp_A          117 ATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYI  193 (254)
T ss_dssp             SEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             CEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEE
Confidence            68999999999999999987643   4699999999998888889999999999999965  5 9999999999999999


Q ss_pred             EEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCC
Q psy2408         189 TLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       189 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                      ++.+........       ..........++.+++.++|+++||+++......
T Consensus       194 ~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  239 (254)
T 1xtp_A          194 FFKENCSTGDRF-------LVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQE  239 (254)
T ss_dssp             EEEEEBC--CCE-------EEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECT
T ss_pred             EEEecCCCcccc-------eecccCCcccCCHHHHHHHHHHCCCEEEEeeecC
Confidence            998864322111       0001112335678999999999999999887653

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.89  E-value=3.5e-23  Score=170.62  Aligned_cols=193  Identities=17%  Similarity=0.120  Sum_probs=138.5

Q ss_pred             chhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCC-CCCCCeEEEeCCCCCHHHHHHHHh
Q psy2408          31 GKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTS-ITKGQRFIDIGCGFGLSGIRLAKA  109 (298)
Q Consensus        31 ~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~  109 (298)
                      ..+...+|||.. ...|+..++...   .+..     .-......+.+.++..+. ..++.+|||+|||+|.++..+++.
T Consensus        30 ~~~~~~~~w~~~-~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~  100 (241)
T 2ex4_A           30 FYSKAKTYWKQI-PPTVDGMLGGYG---HISS-----IDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLP  100 (241)
T ss_dssp             HHHHHHHHHHTS-CSSHHHHTTTCG---GGHH-----HHHHHHHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTT
T ss_pred             hHHHHHHHHhcC-CccccccccCCC---Ccch-----hhHHhHHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHh
Confidence            345677888888 666666544211   0100     001122333334433331 235789999999999999999886


Q ss_pred             cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhcccCCc
Q psy2408         110 KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGS  186 (298)
Q Consensus       110 ~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG  186 (298)
                      ...+|+++|+|+.+++.+++++...+ ..++.++++|+..+++++++||+|++..+++|++++   .+++++.++|+|||
T Consensus       101 ~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG  179 (241)
T 2ex4_A          101 LFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNG  179 (241)
T ss_dssp             TCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             cCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCe
Confidence            56699999999999999999987654 246899999999888777899999999999999985   89999999999999


Q ss_pred             EEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCC
Q psy2408         187 ILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       187 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                      ++++.+.....  .  ..    +.........+.+++.++|+++||+++......
T Consensus       180 ~l~i~~~~~~~--~--~~----~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  226 (241)
T 2ex4_A          180 IIVIKDNMAQE--G--VI----LDDVDSSVCRDLDVVRRIICSAGLSLLAEERQE  226 (241)
T ss_dssp             EEEEEEEEBSS--S--EE----EETTTTEEEEBHHHHHHHHHHTTCCEEEEEECC
T ss_pred             EEEEEEccCCC--c--ce----ecccCCcccCCHHHHHHHHHHcCCeEEEeeecC
Confidence            99998765433  1  00    001111223478899999999999999887654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.89  E-value=1.8e-22  Score=177.35  Aligned_cols=152  Identities=22%  Similarity=0.246  Sum_probs=123.7

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhc-----C-C-CCceEEEECCCCCC------
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAE-----G-L-LDKVNFLHGDALNL------  150 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~-----~-~-~~~i~~~~~d~~~~------  150 (298)
                      +.++.+|||+|||+|.++..+++..  +.+|+|+|+|+.+++.+++++...     | . ..++.++++|+.++      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            4578899999999999999999873  569999999999999999987654     2 2 25799999999987      


Q ss_pred             CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHH--HHHHhhcccCCCCcchHHHHH
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFK--EYVKKNIHSNFILVEHYPDLL  227 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l  227 (298)
                      ++++++||+|+++.+++|++++ .+++++.++|||||+|++.++.......  ....  ...........++.+++.++|
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ll  238 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLS--EAAQQDPILYGECLGGALYLEDFRRLV  238 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCC--HHHHHCHHHHHTTCTTCCBHHHHHHHH
T ss_pred             CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccC--HhHhhhHHHhhcccccCCCHHHHHHHH
Confidence            8888999999999999999999 9999999999999999998876554433  2211  111222334567789999999


Q ss_pred             HhCCCcEEEEEe
Q psy2408         228 NKSGFELIKIDD  239 (298)
Q Consensus       228 ~~~Gf~~~~~~~  239 (298)
                      +++||.+++...
T Consensus       239 ~~aGF~~v~~~~  250 (383)
T 4fsd_A          239 AEAGFRDVRLVS  250 (383)
T ss_dssp             HHTTCCCEEEEE
T ss_pred             HHCCCceEEEEe
Confidence            999998776554

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.89  E-value=1.7e-21  Score=165.43  Aligned_cols=150  Identities=19%  Similarity=0.197  Sum_probs=119.5

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC-CCCCeeEEEecc
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF-DNDSFDGGWFFE  164 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~~  164 (298)
                      +.++.+|||+|||+|..+..+++....+|+|+|+|+.+++.|++++...++..++.++++|+.++++ ++++||+|++..
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  141 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  141 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence            4678899999999999999888854459999999999999999999988776789999999998877 578999999999


Q ss_pred             cccc----cChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHH-------------------H----h-----
Q psy2408         165 SIFH----MNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYV-------------------K----K-----  211 (298)
Q Consensus       165 ~l~~----~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-------------------~----~-----  211 (298)
                      +++|    ..+. .+++++.++|+|||++++..+....      ....+.                   .    .     
T Consensus       142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  215 (298)
T 1ri5_A          142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDV------ILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFT  215 (298)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHH------HHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEE
T ss_pred             hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHH------HHHHHccCccCCeeEEEEeCccccccccccceEEEE
Confidence            9977    3445 9999999999999999998765211      000000                   0    0     


Q ss_pred             ------hcccCCCCcchHHHHHHhCCCcEEEEEeCC
Q psy2408         212 ------NIHSNFILVEHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       212 ------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                            .....+++.+++..+|+++||+++....+.
T Consensus       216 l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~  251 (298)
T 1ri5_A          216 LLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFI  251 (298)
T ss_dssp             ETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred             EchhhcCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence                  011245678999999999999999886544

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.88  E-value=4.6e-22  Score=163.24  Aligned_cols=154  Identities=17%  Similarity=0.196  Sum_probs=127.0

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCe
Q psy2408          78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSF  157 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  157 (298)
                      ..++.....++ .+|||+|||+|..+..+++ .+.+|+|+|+|+.+++.+++++...+...+++++++|+.+++ ++++|
T Consensus        57 ~~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~f  133 (235)
T 3lcc_A           57 VHLVDTSSLPL-GRALVPGCGGGHDVVAMAS-PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELF  133 (235)
T ss_dssp             HHHHHTTCSCC-EEEEEETCTTCHHHHHHCB-TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCE
T ss_pred             HHHHHhcCCCC-CCEEEeCCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCe
Confidence            34455555544 4999999999999999987 678999999999999999999887555567999999999976 45799


Q ss_pred             eEEEecccccccC--hH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcE
Q psy2408         158 DGGWFFESIFHMN--HS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFEL  234 (298)
Q Consensus       158 D~V~~~~~l~~~~--~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  234 (298)
                      |+|++..+++|++  +. .+++++.++|+|||++++.++.......            ..+..++.+++..+|+++||++
T Consensus       134 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~~Gf~~  201 (235)
T 3lcc_A          134 DLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVG------------GPPYKVDVSTFEEVLVPIGFKA  201 (235)
T ss_dssp             EEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCS------------CSSCCCCHHHHHHHHGGGTEEE
T ss_pred             eEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCC------------CCCccCCHHHHHHHHHHcCCeE
Confidence            9999999999998  66 9999999999999999998876543221            1223467899999999999999


Q ss_pred             EEEEeCCCCccc
Q psy2408         235 IKIDDITSHVMP  246 (298)
Q Consensus       235 ~~~~~~~~~~~~  246 (298)
                      +.....+..+..
T Consensus       202 ~~~~~~~~~~~~  213 (235)
T 3lcc_A          202 VSVEENPHAIPT  213 (235)
T ss_dssp             EEEEECTTCCTT
T ss_pred             EEEEecCCcccc
Confidence            999887766544

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.88  E-value=4.1e-22  Score=161.46  Aligned_cols=185  Identities=15%  Similarity=0.148  Sum_probs=133.7

Q ss_pred             hhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCC-CCCCCeEEEeCCCCCHHHHHHHHhc
Q psy2408          32 KKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTS-ITKGQRFIDIGCGFGLSGIRLAKAK  110 (298)
Q Consensus        32 ~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~  110 (298)
                      .+...++|+.. +..|+..+..                  ........+++.+. +.++.+|||+|||+|.++..+++. 
T Consensus         8 ~~~~~~~~~~~-a~~y~~~~~~------------------~~~~~~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~-   67 (218)
T 3ou2_A            8 IESQLSYYRAR-ASEYDATFVP------------------YMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGL-   67 (218)
T ss_dssp             HHHHHHHHHHH-GGGHHHHHHH------------------HHTTTHHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH-
T ss_pred             HHHHHHHHHHH-HHHHHHhhhh------------------HHHHHHHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc-
Confidence            44567888887 7777763211                  11111333344433 567789999999999999999985 


Q ss_pred             CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcE
Q psy2408         111 GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSI  187 (298)
Q Consensus       111 ~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~  187 (298)
                      +.+|+|+|+|+.+++.+++    .+. .+++++++|+.++ +++++||+|++..+++|++++   .+++++.++|+|||.
T Consensus        68 ~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~  141 (218)
T 3ou2_A           68 ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGV  141 (218)
T ss_dssp             SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeE
Confidence            8899999999999999987    343 4699999999987 678999999999999999995   999999999999999


Q ss_pred             EEEEeCCCCCCCCChhHHHHHHHhh------------cccCCCCcchHHHHHHhCCCcEEEEEeCCCC
Q psy2408         188 LTLTDLPLLSVSKNDNKFKEYVKKN------------IHSNFILVEHYPDLLNKSGFELIKIDDITSH  243 (298)
Q Consensus       188 l~i~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  243 (298)
                      +++.++....... ...+.......            ....+++.+++.++|+++||+++.......+
T Consensus       142 l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~  208 (218)
T 3ou2_A          142 VEFVDVTDHERRL-EQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDEVHPGF  208 (218)
T ss_dssp             EEEEEECCCC-------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEEEEEETTE
T ss_pred             EEEEeCCCCcccc-chhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEeeeccccc
Confidence            9999887632211 01010000000            0123568899999999999997766554444

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.88  E-value=2.7e-22  Score=160.94  Aligned_cols=151  Identities=11%  Similarity=0.092  Sum_probs=116.9

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-----------CCCceEEEECCC
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG-----------LLDKVNFLHGDA  147 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-----------~~~~i~~~~~d~  147 (298)
                      .++..+.+.++.+|||+|||+|..+..+++. |.+|+|+|+|+.|++.|+++.....           ...+++++++|+
T Consensus        13 ~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~   91 (203)
T 1pjz_A           13 QYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   91 (203)
T ss_dssp             HHHHHHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHHHhcccCCCCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc
Confidence            3445556678899999999999999999984 8899999999999999998864210           124699999999


Q ss_pred             CCCCCCC-CCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchH
Q psy2408         148 LNLPFDN-DSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY  223 (298)
Q Consensus       148 ~~~~~~~-~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (298)
                      .++++++ ++||+|++..+++|++..   .++++++++|||||++++..........           ...+..++.+++
T Consensus        92 ~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~-----------~~~~~~~~~~el  160 (203)
T 1pjz_A           92 FALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALL-----------EGPPFSVPQTWL  160 (203)
T ss_dssp             SSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSS-----------SSCCCCCCHHHH
T ss_pred             ccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcccc-----------CCCCCCCCHHHH
Confidence            9988654 799999999999999865   7999999999999995554433221100           011223578899


Q ss_pred             HHHHHhCCCcEEEEEeCCC
Q psy2408         224 PDLLNKSGFELIKIDDITS  242 (298)
Q Consensus       224 ~~~l~~~Gf~~~~~~~~~~  242 (298)
                      .+++++ ||+++.......
T Consensus       161 ~~~~~~-gf~i~~~~~~~~  178 (203)
T 1pjz_A          161 HRVMSG-NWEVTKVGGQDT  178 (203)
T ss_dssp             HHTSCS-SEEEEEEEESSC
T ss_pred             HHHhcC-CcEEEEeccccc
Confidence            999988 999888776554

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.88  E-value=4.3e-22  Score=160.74  Aligned_cols=171  Identities=15%  Similarity=0.178  Sum_probs=134.2

Q ss_pred             chhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc
Q psy2408          31 GKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK  110 (298)
Q Consensus        31 ~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~  110 (298)
                      ......++|+.. +..|+.....                    ......++..+  .++.+|||+|||+|.++..+++. 
T Consensus         9 ~~~~~~~~~~~~-~~~y~~~~~~--------------------~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~-   64 (211)
T 3e23_A            9 FDDDTLRFYRGN-ATAYAERQPR--------------------SATLTKFLGEL--PAGAKILELGCGAGYQAEAMLAA-   64 (211)
T ss_dssp             SCHHHHHHHHHS-HHHHTTCCCC--------------------CHHHHHHHTTS--CTTCEEEESSCTTSHHHHHHHHT-
T ss_pred             ccHHHHHHHHHH-HHHHhhccch--------------------hHHHHHHHHhc--CCCCcEEEECCCCCHHHHHHHHc-
Confidence            345678889888 7777664321                    22344455554  56889999999999999999984 


Q ss_pred             CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccC--hH-HHHHHHhhcccCCcE
Q psy2408         111 GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMN--HS-AALNEARRVLKSGSI  187 (298)
Q Consensus       111 ~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~-~~l~~~~r~LkpgG~  187 (298)
                      +.+|+|+|+|+.+++.+++++       ++.++.+|+..++ ++++||+|++..+++|++  +. .+++++.++|+|||+
T Consensus        65 ~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~  136 (211)
T 3e23_A           65 GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGL  136 (211)
T ss_dssp             TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcE
Confidence            789999999999999999886       3678899999888 678999999999999999  55 999999999999999


Q ss_pred             EEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCC-CcEEEEEeCC
Q psy2408         188 LTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG-FELIKIDDIT  241 (298)
Q Consensus       188 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~  241 (298)
                      +++..........  .      .......+++.+++.++|+++| |++++.....
T Consensus       137 l~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~  183 (211)
T 3e23_A          137 FYASYKSGEGEGR--D------KLARYYNYPSEEWLRARYAEAGTWASVAVESSE  183 (211)
T ss_dssp             EEEEEECCSSCEE--C------TTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEE
T ss_pred             EEEEEcCCCcccc--c------ccchhccCCCHHHHHHHHHhCCCcEEEEEEecc
Confidence            9998665433211  0      0112335678999999999999 9999877543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.87  E-value=4.4e-22  Score=165.17  Aligned_cols=164  Identities=15%  Similarity=0.189  Sum_probs=125.1

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND  155 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  155 (298)
                      ....+...+...++.+|||+|||+|..+..+++....+|+|+|+|+.+++.++++..    ..++.++++|+.+++++++
T Consensus        32 ~~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~  107 (253)
T 3g5l_A           32 EWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPD  107 (253)
T ss_dssp             HHHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTT
T ss_pred             hHHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCC
Confidence            344566777766889999999999999999998533399999999999999998865    3579999999999988889


Q ss_pred             CeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCC----------hh---HHHHHHH----------h
Q psy2408         156 SFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKN----------DN---KFKEYVK----------K  211 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~----------~~---~~~~~~~----------~  211 (298)
                      +||+|++..+++|++++ .+++++.++|+|||++++...........          ..   .+...+.          .
T Consensus       108 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (253)
T 3g5l_A          108 AYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGE  187 (253)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTE
T ss_pred             CeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccc
Confidence            99999999999999999 99999999999999999975442100000          00   0000000          0


Q ss_pred             hcccCCCCcchHHHHHHhCCCcEEEEEeCCCC
Q psy2408         212 NIHSNFILVEHYPDLLNKSGFELIKIDDITSH  243 (298)
Q Consensus       212 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  243 (298)
                      .......+.+++.++|+++||+++++.+....
T Consensus       188 ~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~~~  219 (253)
T 3g5l_A          188 DVQKYHRTVTTYIQTLLKNGFQINSVIEPEPA  219 (253)
T ss_dssp             EEEEECCCHHHHHHHHHHTTEEEEEEECCCCC
T ss_pred             cCccEecCHHHHHHHHHHcCCeeeeeecCCCc
Confidence            00111238899999999999999998876544

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.87  E-value=1.2e-21  Score=159.06  Aligned_cols=162  Identities=16%  Similarity=0.206  Sum_probs=120.5

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCC----ceEEEECCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLD----KVNFLHGDALN  149 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~----~i~~~~~d~~~  149 (298)
                      ...+.+++.+...++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.+++++...+++.    +++++++|+..
T Consensus        16 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~   95 (219)
T 3jwg_A           16 QRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVY   95 (219)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSS
T ss_pred             HHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccc
Confidence            3344444554445778999999999999999998543 699999999999999999988776654    79999999988


Q ss_pred             CCCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHH--
Q psy2408         150 LPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP--  224 (298)
Q Consensus       150 ~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  224 (298)
                      .+.+.++||+|++..+++|++++   .+++++.++|+|||.++........... ............+...++.+++.  
T Consensus        96 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~  174 (219)
T 3jwg_A           96 RDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHY-GNLFEGNLRHRDHRFEWTRKEFQTW  174 (219)
T ss_dssp             CCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCC-CCT-----GGGCCTTSBCHHHHHHH
T ss_pred             cccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhh-cccCcccccccCceeeecHHHHHHH
Confidence            77777899999999999999976   9999999999999966655433211110 00011111223344557888888  


Q ss_pred             --HHHHhCCCcEEEE
Q psy2408         225 --DLLNKSGFELIKI  237 (298)
Q Consensus       225 --~~l~~~Gf~~~~~  237 (298)
                        .+++++||++...
T Consensus       175 ~~~l~~~~Gf~v~~~  189 (219)
T 3jwg_A          175 AVKVAEKYGYSVRFL  189 (219)
T ss_dssp             HHHHHHHHTEEEEEE
T ss_pred             HHHHHHHCCcEEEEE
Confidence              7889999976653

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.87  E-value=8.9e-22  Score=162.22  Aligned_cols=158  Identities=17%  Similarity=0.274  Sum_probs=122.1

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCe
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSF  157 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  157 (298)
                      .+...+...++.+|||+|||+|..+..+++. +. +++|+|+|+.+++.++++...    .++.++++|+..+++++++|
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~f  108 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSF  108 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCE
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCc
Confidence            4556666668899999999999999999985 66 999999999999999887543    36899999999888878899


Q ss_pred             eEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCCh----------------hH------HHHHHHhhcc
Q psy2408         158 DGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKND----------------NK------FKEYVKKNIH  214 (298)
Q Consensus       158 D~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~----------------~~------~~~~~~~~~~  214 (298)
                      |+|++..+++|++++ .+++++.++|+|||++++............                ..      ...+......
T Consensus       109 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (243)
T 3bkw_A          109 DLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVV  188 (243)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCC
T ss_pred             eEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceE
Confidence            999999999999999 999999999999999999865321000000                00      0001111122


Q ss_pred             cCCCCcchHHHHHHhCCCcEEEEEeCC
Q psy2408         215 SNFILVEHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       215 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                      ...++.+++.++|+++||+++......
T Consensus       189 ~~~~t~~~~~~~l~~aGF~~~~~~~~~  215 (243)
T 3bkw_A          189 KHHRTVGTTLNALIRSGFAIEHVEEFC  215 (243)
T ss_dssp             EEECCHHHHHHHHHHTTCEEEEEEECC
T ss_pred             EEeccHHHHHHHHHHcCCEeeeeccCC
Confidence            233588999999999999999987654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.87  E-value=2.1e-21  Score=159.10  Aligned_cols=151  Identities=26%  Similarity=0.325  Sum_probs=123.2

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC----CCceEEEECCCCCCCCCCCCeeEEEe
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL----LDKVNFLHGDALNLPFDNDSFDGGWF  162 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~fD~V~~  162 (298)
                      +++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...++    ..++.+++.|+..+++++++||+|++
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM  107 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence            57889999999999999999995 88999999999999999999887665    23689999999999888899999999


Q ss_pred             cccccccChH----HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh--------------------hcccCCC
Q psy2408         163 FESIFHMNHS----AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK--------------------NIHSNFI  218 (298)
Q Consensus       163 ~~~l~~~~~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~  218 (298)
                      ..+++|++++    .+++++.++|+|||++++.++.......  .........                    .....++
T Consensus       108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (235)
T 3sm3_A          108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK--LYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHF  185 (235)
T ss_dssp             ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSH--HHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECB
T ss_pred             cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHH--HHHHHhhhhccchhhhcceEecccccCCcceeeEeC
Confidence            9999999876    7999999999999999999876533222  111111110                    1123467


Q ss_pred             CcchHHHHHHhCCCcEEEEEeC
Q psy2408         219 LVEHYPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       219 ~~~~~~~~l~~~Gf~~~~~~~~  240 (298)
                      +.+++.++|+++||+++++...
T Consensus       186 ~~~~l~~ll~~aGf~~~~~~~~  207 (235)
T 3sm3_A          186 TEKELVFLLTDCRFEIDYFRVK  207 (235)
T ss_dssp             CHHHHHHHHHTTTEEEEEEEEE
T ss_pred             CHHHHHHHHHHcCCEEEEEEec
Confidence            8999999999999999987653

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.87  E-value=6.9e-21  Score=164.24  Aligned_cols=160  Identities=13%  Similarity=0.105  Sum_probs=128.8

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCe
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSF  157 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  157 (298)
                      .+++.+...++.+|||+|||+|..+..+++.. +.+++++|+ +.+++.+++++...++.++++++.+|+.+ ++|. +|
T Consensus       160 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p~-~~  236 (332)
T 3i53_A          160 GIAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLPA-GA  236 (332)
T ss_dssp             TGGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCCC-SC
T ss_pred             HHHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCCC-CC
Confidence            34455555667899999999999999999874 679999999 99999999999998888899999999973 5554 89


Q ss_pred             eEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcE
Q psy2408         158 DGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFEL  234 (298)
Q Consensus       158 D~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  234 (298)
                      |+|++..++++++++   .+|++++++|+|||++++.+.......+ ................++.++|.++|+++||++
T Consensus       237 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~  315 (332)
T 3i53_A          237 GGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHA-GTGMDLRMLTYFGGKERSLAELGELAAQAGLAV  315 (332)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---C-CHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEE
T ss_pred             cEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCc-cHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEE
Confidence            999999999999986   9999999999999999999887655411 111221111223456788999999999999999


Q ss_pred             EEEEeCCC
Q psy2408         235 IKIDDITS  242 (298)
Q Consensus       235 ~~~~~~~~  242 (298)
                      ++....+.
T Consensus       316 ~~~~~~~~  323 (332)
T 3i53_A          316 RAAHPISY  323 (332)
T ss_dssp             EEEEECSS
T ss_pred             EEEEECCC
Confidence            99887654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.87  E-value=1.1e-21  Score=167.26  Aligned_cols=158  Identities=16%  Similarity=0.165  Sum_probs=126.2

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHH--HhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLA--KAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF  163 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~--~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~  163 (298)
                      +.++.+|||+|||+|..+..++  ...+.+|+|+|+|+.+++.+++++...++.++++++++|+.+++++ ++||+|++.
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~  194 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSN  194 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEEC
Confidence            4678899999999999999985  3247899999999999999999999888877899999999999877 899999999


Q ss_pred             ccccccChH-H---HHHHHhhcccCCcEEEEEeCCCCCCCCChh-------------HHHHHHHhhc---ccCCCCcchH
Q psy2408         164 ESIFHMNHS-A---ALNEARRVLKSGSILTLTDLPLLSVSKNDN-------------KFKEYVKKNI---HSNFILVEHY  223 (298)
Q Consensus       164 ~~l~~~~~~-~---~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-------------~~~~~~~~~~---~~~~~~~~~~  223 (298)
                      .+++|++++ .   +++++.++|+|||++++.++..........             .....+....   ...+++.+++
T Consensus       195 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (305)
T 3ocj_A          195 GLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT  274 (305)
T ss_dssp             SSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred             ChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence            999999888 3   799999999999999998866433211000             0011111111   2245789999


Q ss_pred             HHHHHhCCCcEEEEEeCCCCc
Q psy2408         224 PDLLNKSGFELIKIDDITSHV  244 (298)
Q Consensus       224 ~~~l~~~Gf~~~~~~~~~~~~  244 (298)
                      .++|+++||+++.......+.
T Consensus       275 ~~~l~~aGF~~v~~~~~~~~~  295 (305)
T 3ocj_A          275 RAQLEEAGFTDLRFEDDRARL  295 (305)
T ss_dssp             HHHHHHTTCEEEEEECCTTSS
T ss_pred             HHHHHHCCCEEEEEEcccCce
Confidence            999999999999988755443

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.87  E-value=8.6e-22  Score=159.66  Aligned_cols=159  Identities=16%  Similarity=0.129  Sum_probs=117.6

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCC----ceEEEECCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLD----KVNFLHGDALNLP  151 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~----~i~~~~~d~~~~~  151 (298)
                      .+.+++.+...++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.+++++...+++.    ++.++++|+...+
T Consensus        18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~   97 (217)
T 3jwh_A           18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD   97 (217)
T ss_dssp             HHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc
Confidence            34444554445778999999999999999998643 699999999999999999988777653    7999999998777


Q ss_pred             CCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHH----
Q psy2408         152 FDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP----  224 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  224 (298)
                      .+.++||+|++..+++|++++   .+++++.++|+|||.+++.......... ............+...++.+++.    
T Consensus        98 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~  176 (217)
T 3jwh_A           98 KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKF-ANLPAGKLRHKDHRFEWTRSQFQNWAN  176 (217)
T ss_dssp             GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHT-C-----------CCSCBCHHHHHHHHH
T ss_pred             ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhh-cccccccccccccccccCHHHHHHHHH
Confidence            667899999999999999976   9999999999999977765432100000 00000001112234457888888    


Q ss_pred             HHHHhCCCcEEE
Q psy2408         225 DLLNKSGFELIK  236 (298)
Q Consensus       225 ~~l~~~Gf~~~~  236 (298)
                      .+++++||+++.
T Consensus       177 ~~~~~~Gf~v~~  188 (217)
T 3jwh_A          177 KITERFAYNVQF  188 (217)
T ss_dssp             HHHHHSSEEEEE
T ss_pred             HHHHHcCceEEE
Confidence            888999998754

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.87  E-value=5.3e-21  Score=161.38  Aligned_cols=160  Identities=20%  Similarity=0.304  Sum_probs=125.2

Q ss_pred             HHHHHHHhC-CCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          76 LSRIMINKT-SITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        76 ~~~~l~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      ....+++.+ .+.++.+|||+|||+|.++..+++..  +++|+|+|+|+.+++.+++++...+.  +++++++|+.++++
T Consensus         9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~   86 (284)
T 3gu3_A            9 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL   86 (284)
T ss_dssp             HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC
T ss_pred             HHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCc
Confidence            344455444 55788999999999999999999864  47999999999999999999886553  79999999999887


Q ss_pred             CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCC-----C--C-CC-----ChhHHHHHHH---hhccc
Q psy2408         153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLL-----S--V-SK-----NDNKFKEYVK---KNIHS  215 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~-----~--~-~~-----~~~~~~~~~~---~~~~~  215 (298)
                      + ++||+|++..+++|++++ .+++++.++|+|||++++.++.+.     -  . ..     ....+.....   .....
T Consensus        87 ~-~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (284)
T 3gu3_A           87 N-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGK  165 (284)
T ss_dssp             S-SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCC
T ss_pred             C-CCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcc
Confidence            4 699999999999999999 999999999999999999987721     0  0 00     0111222211   12234


Q ss_pred             CCCCcchHHHHHHhCCCcEEEEE
Q psy2408         216 NFILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       216 ~~~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                      .+.+..++..+|+++||..+...
T Consensus       166 ~~~~~~~l~~~l~~aGF~~v~~~  188 (284)
T 3gu3_A          166 DGNIGMKIPIYLSELGVKNIECR  188 (284)
T ss_dssp             CTTGGGTHHHHHHHTTCEEEEEE
T ss_pred             cccHHHHHHHHHHHcCCCeEEEE
Confidence            56677899999999999988764

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.87  E-value=6.9e-21  Score=153.58  Aligned_cols=175  Identities=19%  Similarity=0.227  Sum_probs=128.1

Q ss_pred             hhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEE
Q psy2408          37 TLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVD  115 (298)
Q Consensus        37 ~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~  115 (298)
                      ++||.. ++.|+..+...              ......+....++..+.. ++.+|||+|||+|..+..+    +. +++
T Consensus         1 ~~fd~~-a~~y~~~~~~~--------------~~~~~~~~~~~~l~~~~~-~~~~vLdiG~G~G~~~~~l----~~~~v~   60 (211)
T 2gs9_A            1 DPFASL-AEAYEAWYGTP--------------LGAYVIAEEERALKGLLP-PGESLLEVGAGTGYWLRRL----PYPQKV   60 (211)
T ss_dssp             CTTTTT-TTTTTGGGGSH--------------HHHHHHHHHHHHHHTTCC-CCSEEEEETCTTCHHHHHC----CCSEEE
T ss_pred             CchhhH-HHHHHHHhccc--------------chhhhHHHHHHHHHHhcC-CCCeEEEECCCCCHhHHhC----CCCeEE
Confidence            367777 77777654321              112222344455555543 7889999999999998877    56 999


Q ss_pred             EEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         116 GITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       116 ~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ++|+|+.+++.++++.      .++.++++|+.++++++++||+|++..+++|++++ .+++++.++|+|||.+++.+++
T Consensus        61 ~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A           61 GVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             EECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecC
Confidence            9999999999999875      35899999999998888899999999999999999 9999999999999999999876


Q ss_pred             CCCCCCChhHHHHHHH----hhcccCCCCcchHHHHHHhCCCcEEEEEeCCC
Q psy2408         195 LLSVSKNDNKFKEYVK----KNIHSNFILVEHYPDLLNKSGFELIKIDDITS  242 (298)
Q Consensus       195 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  242 (298)
                      ......  ........    ...+.++++.+++.++|+  | .+........
T Consensus       135 ~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G-~~~~~~~~~~  181 (211)
T 2gs9_A          135 ALSPWA--ALYRRLGEKGVLPWAQARFLAREDLKALLG--P-PEAEGEAVFL  181 (211)
T ss_dssp             TTSHHH--HHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S-CSEEEEECCS
T ss_pred             CcCcHH--HHHHHHhhccCccccccccCCHHHHHHHhc--C-cceeEEEEEe
Confidence            443211  11111111    112456789999999998  7 4444444333

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.86  E-value=7.9e-20  Score=159.72  Aligned_cols=162  Identities=17%  Similarity=0.130  Sum_probs=133.5

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      .....+++.+...++.+|||+|||+|..+..+++.. +.+++++|+ +.+++.+++.+...++.++++++.+|+. .+++
T Consensus       189 ~~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p  266 (369)
T 3gwz_A          189 TEAGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIP  266 (369)
T ss_dssp             HHHHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCC
T ss_pred             hhHHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCC
Confidence            335667777877888999999999999999999874 679999999 9999999999999888889999999998 4555


Q ss_pred             CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChh-HH-HHHHHhhcccCCCCcchHHHHHH
Q psy2408         154 NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDN-KF-KEYVKKNIHSNFILVEHYPDLLN  228 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~  228 (298)
                      . +||+|++..++++++++   .+|++++++|+|||++++.+........ .. .. ............++.++|.++|+
T Consensus       267 ~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~-~~~~~~d~~~~~~~~g~~~t~~e~~~ll~  344 (369)
T 3gwz_A          267 D-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPA-ASTLFVDLLLLVLVGGAERSESEFAALLE  344 (369)
T ss_dssp             S-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCC-HHHHHHHHHHHHHHSCCCBCHHHHHHHHH
T ss_pred             C-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCC-CchhHhhHHHHhhcCCccCCHHHHHHHHH
Confidence            5 89999999999999988   7999999999999999999887665433 11 01 11111123456788999999999


Q ss_pred             hCCCcEEEEEeC
Q psy2408         229 KSGFELIKIDDI  240 (298)
Q Consensus       229 ~~Gf~~~~~~~~  240 (298)
                      ++||+++++...
T Consensus       345 ~aGf~~~~~~~~  356 (369)
T 3gwz_A          345 KSGLRVERSLPC  356 (369)
T ss_dssp             TTTEEEEEEEEC
T ss_pred             HCCCeEEEEEEC
Confidence            999999998774

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.6e-20  Score=159.56  Aligned_cols=156  Identities=13%  Similarity=0.136  Sum_probs=116.5

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEECCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAE-GLLDKVNFLHGDALNLP  151 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~l~~a~~~~~~~-~~~~~i~~~~~d~~~~~  151 (298)
                      .+.+.+..... .++.+|||+|||+|..+..+++.  .+.+|+|+|+|+.+++.|++++... +...+++++++|+.+++
T Consensus        24 ~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~  102 (299)
T 3g5t_A           24 DFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK  102 (299)
T ss_dssp             HHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG
T ss_pred             HHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC
Confidence            34455555443 57889999999999999999974  4789999999999999999998876 44568999999999987


Q ss_pred             CCC------CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCC---CCCCChhHHHHHHHh--hcccCC--
Q psy2408         152 FDN------DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLL---SVSKNDNKFKEYVKK--NIHSNF--  217 (298)
Q Consensus       152 ~~~------~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~---~~~~~~~~~~~~~~~--~~~~~~--  217 (298)
                      +++      ++||+|++..+++|+ ++ .+++++.++|+|||.+++.++...   ........+..+...  ...+.+  
T Consensus       103 ~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  181 (299)
T 3g5t_A          103 FLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQ  181 (299)
T ss_dssp             GGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHHCTTTTGGGSCT
T ss_pred             ccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHHHHHHHHHhccCcccccchhhc
Confidence            766      899999999999999 88 999999999999999998544321   111111222222211  112222  


Q ss_pred             CCcchHHHHHHhCCC
Q psy2408         218 ILVEHYPDLLNKSGF  232 (298)
Q Consensus       218 ~~~~~~~~~l~~~Gf  232 (298)
                      ...+.+.+.++++||
T Consensus       182 p~~~~~~~~l~~~gf  196 (299)
T 3g5t_A          182 PGRSRLRNMLKDSHL  196 (299)
T ss_dssp             THHHHHHTTTTTCCC
T ss_pred             hhhHHHHHhhhccCC
Confidence            234557888999999

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.86  E-value=9.9e-22  Score=167.10  Aligned_cols=165  Identities=15%  Similarity=0.202  Sum_probs=123.7

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC--CceEEEECCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLL--DKVNFLHGDALNLPF  152 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~i~~~~~d~~~~~~  152 (298)
                      .....+++.+...++ +|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...++.  .++.++++|+.++++
T Consensus        70 ~~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  147 (299)
T 3g2m_A           70 SEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL  147 (299)
T ss_dssp             HHHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred             HHHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence            445556666654444 9999999999999999985 789999999999999999998876532  479999999999887


Q ss_pred             CCCCeeEEEec-ccccccCh--H-HHHHHHhhcccCCcEEEEEeCCCCCC----CCChhHHHHHHH--------------
Q psy2408         153 DNDSFDGGWFF-ESIFHMNH--S-AALNEARRVLKSGSILTLTDLPLLSV----SKNDNKFKEYVK--------------  210 (298)
Q Consensus       153 ~~~~fD~V~~~-~~l~~~~~--~-~~l~~~~r~LkpgG~l~i~~~~~~~~----~~~~~~~~~~~~--------------  210 (298)
                       +++||+|++. .+++++++  . .+|+++.++|+|||+|++..+.....    ......+.....              
T Consensus       148 -~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  226 (299)
T 3g2m_A          148 -DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEE  226 (299)
T ss_dssp             -SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEE
T ss_pred             -CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecccc
Confidence             6899999865 66777764  3 99999999999999999988765321    000000000000              


Q ss_pred             ------------------hhcccCCCCcchHHHHHHhCCCcEEEEEeCCC
Q psy2408         211 ------------------KNIHSNFILVEHYPDLLNKSGFELIKIDDITS  242 (298)
Q Consensus       211 ------------------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  242 (298)
                                        ......+++.+++..+|+++||+++....+..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~  276 (299)
T 3g2m_A          227 IQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFAS  276 (299)
T ss_dssp             EEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECT
T ss_pred             EEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCC
Confidence                              00112356899999999999999999988763

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.86  E-value=1.3e-21  Score=161.99  Aligned_cols=113  Identities=20%  Similarity=0.252  Sum_probs=96.7

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      .+.+.+.+..  ..+.+|||||||+|..+..+++ .+.+|+|+|+|+.|++.|++.       .++.++++|+.++++++
T Consensus        28 ~l~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~-~~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~~~   97 (257)
T 4hg2_A           28 ALFRWLGEVA--PARGDALDCGCGSGQASLGLAE-FFERVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGLPP   97 (257)
T ss_dssp             HHHHHHHHHS--SCSSEEEEESCTTTTTHHHHHT-TCSEEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCCCS
T ss_pred             HHHHHHHHhc--CCCCCEEEEcCCCCHHHHHHHH-hCCEEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcccC
Confidence            4556666665  3456999999999999999998 578999999999999887532       47999999999999999


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      ++||+|++..+++++..+.++++++|+|||||+|++..+....
T Consensus        98 ~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~~~~~~  140 (257)
T 4hg2_A           98 ASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVTYGLTR  140 (257)
T ss_dssp             SCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEEECCCB
T ss_pred             CcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence            9999999999998876449999999999999999998776544

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.86  E-value=2.9e-20  Score=160.58  Aligned_cols=165  Identities=15%  Similarity=0.249  Sum_probs=132.8

Q ss_pred             HHHHHHHhCCC--CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          76 LSRIMINKTSI--TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        76 ~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      ....+++.+..  .++.+|||+|||+|..+..+++.. +.+++++|+| .+++.+++++...++.++++++.+|+.+.++
T Consensus       151 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  229 (335)
T 2r3s_A          151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY  229 (335)
T ss_dssp             HHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC
T ss_pred             hHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC
Confidence            34466666666  778899999999999999999874 6799999999 9999999999988887789999999988766


Q ss_pred             CCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHH-----hhcccCCCCcchHH
Q psy2408         153 DNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVK-----KNIHSNFILVEHYP  224 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  224 (298)
                      +. .||+|++..++++++++   .+++++.++|+|||++++.++......... .......     .......++.++|.
T Consensus       230 ~~-~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~  307 (335)
T 2r3s_A          230 GN-DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP-PDAAAFSLVMLATTPNGDAYTFAEYE  307 (335)
T ss_dssp             CS-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS-HHHHHHHHHHHHHSSSCCCCCHHHHH
T ss_pred             CC-CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc-hHHHHHHHHHHeeCCCCCcCCHHHHH
Confidence            54 49999999999999765   999999999999999999988765432211 1111111     11145678899999


Q ss_pred             HHHHhCCCcEEEEEeCCCC
Q psy2408         225 DLLNKSGFELIKIDDITSH  243 (298)
Q Consensus       225 ~~l~~~Gf~~~~~~~~~~~  243 (298)
                      ++++++||+++++..+...
T Consensus       308 ~ll~~aGf~~~~~~~~~~~  326 (335)
T 2r3s_A          308 SMFSNAGFSHSQLHSLPTT  326 (335)
T ss_dssp             HHHHHTTCSEEEEECCTTS
T ss_pred             HHHHHCCCCeeeEEECCCC
Confidence            9999999999998876543

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.85  E-value=2.5e-21  Score=159.70  Aligned_cols=148  Identities=16%  Similarity=0.153  Sum_probs=115.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecc-cc
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE-SI  166 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~-~l  166 (298)
                      ++.+|||+|||+|..+..+++. +.+++|+|+|+.+++.+++++...+.  ++.++++|+.+++++ ++||+|++.. ++
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~-~~fD~v~~~~~~l  112 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN-RKFDLITCCLDST  112 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS-CCEEEEEECTTGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCcc-CCceEEEEcCccc
Confidence            6789999999999999999984 78999999999999999999887664  689999999988876 8999999998 99


Q ss_pred             cccC---hH-HHHHHHhhcccCCcEEEEEeCCCCCC---CCCh------h----HHHHH---------------------
Q psy2408         167 FHMN---HS-AALNEARRVLKSGSILTLTDLPLLSV---SKND------N----KFKEY---------------------  208 (298)
Q Consensus       167 ~~~~---~~-~~l~~~~r~LkpgG~l~i~~~~~~~~---~~~~------~----~~~~~---------------------  208 (298)
                      +|++   +. .+++++.++|+|||++++........   ....      .    .+...                     
T Consensus       113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (246)
T 1y8c_A          113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYK  192 (246)
T ss_dssp             GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEE
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCccc
Confidence            9994   44 99999999999999999865442100   0000      0    00000                     


Q ss_pred             -HHhhcccCCCCcchHHHHHHhCCCcEEEEEe
Q psy2408         209 -VKKNIHSNFILVEHYPDLLNKSGFELIKIDD  239 (298)
Q Consensus       209 -~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  239 (298)
                       .....+..+++.+++.++|+++||++++...
T Consensus       193 ~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~  224 (246)
T 1y8c_A          193 RFDEEHEERAYKEEDIEKYLKHGQLNILDKVD  224 (246)
T ss_dssp             EEEEEEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             ccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEc
Confidence             0001123567899999999999999998764

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.85  E-value=3.1e-20  Score=151.51  Aligned_cols=165  Identities=18%  Similarity=0.333  Sum_probs=127.8

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC--CCCCCC
Q psy2408          78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN--LPFDND  155 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~  155 (298)
                      ..+++.+. .++.+|||+|||+|..+..+++. +.+++++|+|+.+++.+++..        .+++++|+.+  .+++++
T Consensus        23 ~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~   92 (230)
T 3cc8_A           23 PNLLKHIK-KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEE   92 (230)
T ss_dssp             HHHHTTCC-TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTT
T ss_pred             HHHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCC
Confidence            45566665 67889999999999999999996 789999999999999887653        3688999876  466778


Q ss_pred             CeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh-----------hcccCCCCcchH
Q psy2408         156 SFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK-----------NIHSNFILVEHY  223 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  223 (298)
                      +||+|++..+++|++++ .+++++.++|+|||++++..+.....    .........           ..+..+++.+++
T Consensus        93 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (230)
T 3cc8_A           93 QFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHI----SVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEM  168 (230)
T ss_dssp             CEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSH----HHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHH
T ss_pred             ccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchH----HHHHHHhcCCceeccCCCCCcceEEEecHHHH
Confidence            99999999999999999 99999999999999999987663221    111111111           112356789999


Q ss_pred             HHHHHhCCCcEEEEEeCCCCcccchHHHHHHHHHH
Q psy2408         224 PDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLT  258 (298)
Q Consensus       224 ~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (298)
                      .++|+++||+++....+.... . ....|...+..
T Consensus       169 ~~~l~~~Gf~~~~~~~~~~~~-~-~~~~~~~~l~~  201 (230)
T 3cc8_A          169 LRMFLKAGYSISKVDRVYVDH-K-MYEPLIEELYG  201 (230)
T ss_dssp             HHHHHHTTEEEEEEEEEECCC-G-GGHHHHHHHHH
T ss_pred             HHHHHHcCCeEEEEEecccCh-h-hccchHHHHHH
Confidence            999999999999988877665 3 44555555443

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.85  E-value=4.1e-21  Score=162.74  Aligned_cols=157  Identities=15%  Similarity=0.191  Sum_probs=110.6

Q ss_pred             HHHHhCC-CCCCCeEEEeCCCCCHHHHHHH----Hh-cCCeE--EEEeCCHHHHHHHHHHHHhc-CCCCceEE--EECCC
Q psy2408          79 IMINKTS-ITKGQRFIDIGCGFGLSGIRLA----KA-KGCRV--DGITISKFQQESAMKTAKAE-GLLDKVNF--LHGDA  147 (298)
Q Consensus        79 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~----~~-~~~~v--~~vD~s~~~l~~a~~~~~~~-~~~~~i~~--~~~d~  147 (298)
                      .++..++ ..++.+|||||||+|.++..++    .. .+.++  +++|+|+.|++.|++++... ++ .++.+  ...++
T Consensus        42 ~~l~~~~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~  120 (292)
T 2aot_A           42 GIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETS  120 (292)
T ss_dssp             HHSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCH
T ss_pred             hHHhhccCCCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecch
Confidence            3344443 3567899999999998765443    22 24544  99999999999999998753 33 34544  45555


Q ss_pred             CCCC------CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhh---cccCC
Q psy2408         148 LNLP------FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKN---IHSNF  217 (298)
Q Consensus       148 ~~~~------~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~  217 (298)
                      .+++      +++++||+|++..+++|++++ .+|++++|+|||||++++.........  ...+.......   .+..+
T Consensus       121 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  198 (292)
T 2aot_A          121 SEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGW--DKLWKKYGSRFPQDDLCQY  198 (292)
T ss_dssp             HHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHH--HHHHHHHGGGSCCCTTCCC
T ss_pred             hhhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccH--HHHHHHHHHhccCCCcccC
Confidence            4432      457899999999999999999 999999999999999999865532110  01111211111   12356


Q ss_pred             CCcchHHHHHHhCCCcEEEEE
Q psy2408         218 ILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       218 ~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                      ++.+++.++|+++||.++...
T Consensus       199 ~~~~~~~~~l~~aGf~~~~~~  219 (292)
T 2aot_A          199 ITSDDLTQMLDNLGLKYECYD  219 (292)
T ss_dssp             CCHHHHHHHHHHHTCCEEEEE
T ss_pred             CCHHHHHHHHHHCCCceEEEE
Confidence            788999999999999988644

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.85  E-value=3.2e-21  Score=150.20  Aligned_cols=142  Identities=19%  Similarity=0.186  Sum_probs=117.6

Q ss_pred             HHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeE
Q psy2408          80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDG  159 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  159 (298)
                      +++.+.+.++.+|||+|||+|.++..+++.. .+++++|+|+.+++.++++      .+++.++..|   .++++++||+
T Consensus         9 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d---~~~~~~~~D~   78 (170)
T 3i9f_A            9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEK------FDSVITLSDP---KEIPDNSVDF   78 (170)
T ss_dssp             THHHHHSSCCEEEEEETCTTCTTHHHHHTTE-EEEEEECSCHHHHHHHHHH------CTTSEEESSG---GGSCTTCEEE
T ss_pred             HHHhcCcCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC---CCCCCCceEE
Confidence            3444456788899999999999999999865 4999999999999999988      2468999999   5667889999


Q ss_pred             EEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEE
Q psy2408         160 GWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       160 V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                      |++..+++|++++ .+++++.++|+|||++++.++........          ......++.+++.++++  ||++++..
T Consensus        79 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~--Gf~~~~~~  146 (170)
T 3i9f_A           79 ILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIG----------PPLSIRMDEKDYMGWFS--NFVVEKRF  146 (170)
T ss_dssp             EEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSS----------SCGGGCCCHHHHHHHTT--TEEEEEEE
T ss_pred             EEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccC----------chHhhhcCHHHHHHHHh--CcEEEEcc
Confidence            9999999999999 99999999999999999998775442220          11234578899999998  99999988


Q ss_pred             eCCCC
Q psy2408         239 DITSH  243 (298)
Q Consensus       239 ~~~~~  243 (298)
                      .++..
T Consensus       147 ~~~~~  151 (170)
T 3i9f_A          147 NPTPY  151 (170)
T ss_dssp             CSSTT
T ss_pred             CCCCc
Confidence            87644

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.85  E-value=4.1e-20  Score=147.48  Aligned_cols=148  Identities=16%  Similarity=0.159  Sum_probs=121.2

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD  158 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  158 (298)
                      .+++.+...++.+|||+|||+|..+..+++. +.+++++|+|+.+++.+++++...+++ ++.++++|+.++++ +++||
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~-~~~~D   99 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLTF-DRQYD   99 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCCC-CCCEE
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCCC-CCCce
Confidence            3455555567789999999999999999985 789999999999999999999887763 59999999998877 78999


Q ss_pred             EEEecccccccC--hH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEE
Q psy2408         159 GGWFFESIFHMN--HS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI  235 (298)
Q Consensus       159 ~V~~~~~l~~~~--~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  235 (298)
                      +|++..+++|++  +. .+++++.++|+|||++++.+.........         .......++.+++.+++++  |+++
T Consensus       100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~--f~~~  168 (199)
T 2xvm_A          100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC---------TVGFPFAFKEGELRRYYEG--WERV  168 (199)
T ss_dssp             EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC---------CSCCSCCBCTTHHHHHTTT--SEEE
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCC---------CCCCCCccCHHHHHHHhcC--CeEE
Confidence            999999999998  55 99999999999999988876554332220         0123346788999999986  9988


Q ss_pred             EEEeC
Q psy2408         236 KIDDI  240 (298)
Q Consensus       236 ~~~~~  240 (298)
                      ...+.
T Consensus       169 ~~~~~  173 (199)
T 2xvm_A          169 KYNED  173 (199)
T ss_dssp             EEECC
T ss_pred             Eeccc
Confidence            87654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.84  E-value=5.6e-20  Score=153.36  Aligned_cols=161  Identities=16%  Similarity=0.231  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC
Q psy2408          69 FAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL  148 (298)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~  148 (298)
                      +......+.+.+...+  +++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++.      ++.++++|+.
T Consensus        33 ~~~~~~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~  103 (263)
T 3pfg_A           33 YHREAADLAALVRRHS--PKAASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRNP------DAVLHHGDMR  103 (263)
T ss_dssp             HHHHHHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTT
T ss_pred             HHHHHHHHHHHHHhhC--CCCCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCEEEECChH
Confidence            3444455556665554  45689999999999999999984 7799999999999999998753      5899999999


Q ss_pred             CCCCCCCCeeEEEecc-cccccChH----HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHH-----------------
Q psy2408         149 NLPFDNDSFDGGWFFE-SIFHMNHS----AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFK-----------------  206 (298)
Q Consensus       149 ~~~~~~~~fD~V~~~~-~l~~~~~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~-----------------  206 (298)
                      ++++ +++||+|++.. +++|++++    .+++++.++|+|||++++.++.............                 
T Consensus       104 ~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (263)
T 3pfg_A          104 DFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSS  182 (263)
T ss_dssp             TCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEE
T ss_pred             HCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEE
Confidence            9877 68999999998 99999743    8899999999999999997554333211000000                 


Q ss_pred             ----------HH-----------HHhhcccCCCCcchHHHHHHhCCCcEEEEEe
Q psy2408         207 ----------EY-----------VKKNIHSNFILVEHYPDLLNKSGFELIKIDD  239 (298)
Q Consensus       207 ----------~~-----------~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  239 (298)
                                .+           ........+++.+++.++|+++||+++.+..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~  236 (263)
T 3pfg_A          183 REGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPG  236 (263)
T ss_dssp             EETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESS
T ss_pred             ecCcEEEEEEEEEEecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeC
Confidence                      00           0000113467899999999999999988754

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.84  E-value=2.7e-21  Score=157.47  Aligned_cols=188  Identities=14%  Similarity=0.178  Sum_probs=132.2

Q ss_pred             CchhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh
Q psy2408          30 KGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA  109 (298)
Q Consensus        30 ~~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~  109 (298)
                      ...+.+.++|+.. +..|+......             ............++..+...++.+|||+|||+|.++..+++.
T Consensus         8 ~~~~~~~~~~~~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~   73 (227)
T 3e8s_A            8 NPEDALLDSWHQN-AQAWIDAVRHG-------------AIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADR   73 (227)
T ss_dssp             CHHHHHHHHHHHH-HHHHHHHHHHT-------------CCHHHHHTHHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT
T ss_pred             cHHHHHHHHHHhh-HHHHHHHhccc-------------ccccccccccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC
Confidence            3456778899887 66776532111             011111223334444444456789999999999999999985


Q ss_pred             cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC---CCC-CCCeeEEEecccccccChH-HHHHHHhhcccC
Q psy2408         110 KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL---PFD-NDSFDGGWFFESIFHMNHS-AALNEARRVLKS  184 (298)
Q Consensus       110 ~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~-~~~fD~V~~~~~l~~~~~~-~~l~~~~r~Lkp  184 (298)
                       +.+|+|+|+|+.+++.++++       .++.+...|+.++   ++. .++||+|++..+++ ..++ .+++++.++|+|
T Consensus        74 -~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~p  144 (227)
T 3e8s_A           74 -GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQDIIELLSAMRTLLVP  144 (227)
T ss_dssp             -TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEE
T ss_pred             -CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCCCccEEEECchhh-hhhHHHHHHHHHHHhCC
Confidence             88999999999999999877       3467888887765   433 34599999999999 6677 999999999999


Q ss_pred             CcEEEEEeCCCCCCCCC--hhHH-----HHHHH--hhcccCCCCcchHHHHHHhCCCcEEEEEeC
Q psy2408         185 GSILTLTDLPLLSVSKN--DNKF-----KEYVK--KNIHSNFILVEHYPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       185 gG~l~i~~~~~~~~~~~--~~~~-----~~~~~--~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  240 (298)
                      ||++++.++........  ...+     .....  ......+++.+++.++|+++||+++++...
T Consensus       145 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  209 (227)
T 3e8s_A          145 GGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQEP  209 (227)
T ss_dssp             EEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEECC
T ss_pred             CeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEecC
Confidence            99999998765432210  0000     00000  012234568999999999999999988763

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.84  E-value=2.9e-20  Score=153.58  Aligned_cols=143  Identities=14%  Similarity=0.174  Sum_probs=111.1

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh----------c------CCCCceEEEECCCCC
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA----------E------GLLDKVNFLHGDALN  149 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~----------~------~~~~~i~~~~~d~~~  149 (298)
                      +.++.+|||+|||+|..+..|++ .|.+|+|+|+|+.|++.|+++...          .      ....+++++++|+.+
T Consensus        66 ~~~~~~vLD~GCG~G~~~~~La~-~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           66 GQSGLRVFFPLCGKAIEMKWFAD-RGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHH-TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCCeEEEeCCCCcHHHHHHHH-CCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            35778999999999999999998 588999999999999999876531          0      012469999999999


Q ss_pred             CCCCC-CCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHH
Q psy2408         150 LPFDN-DSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPD  225 (298)
Q Consensus       150 ~~~~~-~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (298)
                      +++++ ++||+|++..++++++..   .+++++.++|||||++++.++.......           ...+..++.+++..
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~-----------~g~~~~~~~~el~~  213 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH-----------AGPPFYVPSAELKR  213 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC-----------CCSSCCCCHHHHHH
T ss_pred             CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC-----------CCCCCCCCHHHHHH
Confidence            87654 799999999999999764   7999999999999999765444221100           01122367889999


Q ss_pred             HHHhCCCcEEEEEeCC
Q psy2408         226 LLNKSGFELIKIDDIT  241 (298)
Q Consensus       226 ~l~~~Gf~~~~~~~~~  241 (298)
                      ++.. +|+++......
T Consensus       214 ~l~~-~f~v~~~~~~~  228 (252)
T 2gb4_A          214 LFGT-KCSMQCLEEVD  228 (252)
T ss_dssp             HHTT-TEEEEEEEEEE
T ss_pred             HhhC-CeEEEEEeccc
Confidence            9987 59988776543

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.84  E-value=1.5e-19  Score=158.50  Aligned_cols=161  Identities=17%  Similarity=0.154  Sum_probs=127.8

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC
Q psy2408          78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS  156 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  156 (298)
                      ..+++.+.+.++.+|||||||+|.++..+++.. +.+++++|+ +.+++.+++++...++.++++++.+|+.+ +++. .
T Consensus       172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~  248 (374)
T 1qzz_A          172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-T  248 (374)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-C
T ss_pred             HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-C
Confidence            456677777788999999999999999999874 679999999 99999999999988887789999999976 4443 4


Q ss_pred             eeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeC--CCCCCCCChhHHHHHHH----hhcccCCCCcchHHHHH
Q psy2408         157 FDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDL--PLLSVSKNDNKFKEYVK----KNIHSNFILVEHYPDLL  227 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l  227 (298)
                      ||+|++..++++++++   .+++++.++|+|||++++.+.  .......  ..+.....    .......++.++|.++|
T Consensus       249 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  326 (374)
T 1qzz_A          249 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD--RFFSTLLDLRMLTFMGGRVRTRDEVVDLA  326 (374)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHHHHSCCCCCHHHHHHHH
T ss_pred             CCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC--cchhhhcchHHHHhCCCcCCCHHHHHHHH
Confidence            9999999999999987   899999999999999999988  5332211  11111111    11235668999999999


Q ss_pred             HhCCCcEEEEEeCCCC
Q psy2408         228 NKSGFELIKIDDITSH  243 (298)
Q Consensus       228 ~~~Gf~~~~~~~~~~~  243 (298)
                      +++||++++....+..
T Consensus       327 ~~aGf~~~~~~~~~~~  342 (374)
T 1qzz_A          327 GSAGLALASERTSGST  342 (374)
T ss_dssp             HTTTEEEEEEEEECCS
T ss_pred             HHCCCceEEEEECCCC
Confidence            9999999988876543

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.84  E-value=3.9e-20  Score=161.35  Aligned_cols=152  Identities=15%  Similarity=0.190  Sum_probs=122.7

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCCCeeEEEec
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDNDSFDGGWFF  163 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~  163 (298)
                      ..+.+|||||||+|..+..+++.. +.+++++|+ +.+++.|++++...++.++++++.+|+.+.  |++ ++||+|++.
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~  255 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS  255 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence            456799999999999999999874 679999999 999999999998888777899999999885  465 789999999


Q ss_pred             ccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHH--H---H--HhhcccCCCCcchHHHHHHhCCCc
Q psy2408         164 ESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKE--Y---V--KKNIHSNFILVEHYPDLLNKSGFE  233 (298)
Q Consensus       164 ~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~--~---~--~~~~~~~~~~~~~~~~~l~~~Gf~  233 (298)
                      .++++++++   .+|++++++|+|||++++.+............+..  .   .  ........++.++|.++|+++||+
T Consensus       256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~  335 (363)
T 3dp7_A          256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLE  335 (363)
T ss_dssp             SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEE
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCe
Confidence            999999887   88999999999999999999876654331111100  0   0  011223467899999999999999


Q ss_pred             EEEEEeC
Q psy2408         234 LIKIDDI  240 (298)
Q Consensus       234 ~~~~~~~  240 (298)
                      ++++...
T Consensus       336 ~v~~~~~  342 (363)
T 3dp7_A          336 VEEIQDN  342 (363)
T ss_dssp             ESCCCCC
T ss_pred             EEEEEeC
Confidence            8876643

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.84  E-value=3.7e-20  Score=152.47  Aligned_cols=131  Identities=22%  Similarity=0.309  Sum_probs=103.3

Q ss_pred             hhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEE
Q psy2408          38 LYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGI  117 (298)
Q Consensus        38 ~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~v  117 (298)
                      +|+.. +..|+......             .    .....+.+...+  .++.+|||+|||+|..+..+++.  .+++|+
T Consensus         3 ~y~~~-a~~yd~~~~~~-------------~----~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~v~~v   60 (243)
T 3d2l_A            3 AYEQF-AYVYDELMQDV-------------P----YPEWVAWVLEQV--EPGKRIADIGCGTGTATLLLADH--YEVTGV   60 (243)
T ss_dssp             ---CT-THHHHHHTTTC-------------C----HHHHHHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT--SEEEEE
T ss_pred             hHHHH-HHHHHHhhhcc-------------c----HHHHHHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC--CeEEEE
Confidence            57777 77777654211             1    123455566665  45689999999999999999885  799999


Q ss_pred             eCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecc-cccccCh---H-HHHHHHhhcccCCcEEEEEe
Q psy2408         118 TISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE-SIFHMNH---S-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       118 D~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~-~l~~~~~---~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      |+|+.+++.+++++...+  .++.++++|+.+++++ ++||+|++.. +++|+.+   . .+++++.++|+|||++++..
T Consensus        61 D~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A           61 DLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV  137 (243)
T ss_dssp             ESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            999999999999988765  4689999999988765 7899999986 9999843   3 89999999999999999864


Q ss_pred             C
Q psy2408         193 L  193 (298)
Q Consensus       193 ~  193 (298)
                      .
T Consensus       138 ~  138 (243)
T 3d2l_A          138 H  138 (243)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.84  E-value=2.6e-21  Score=163.69  Aligned_cols=147  Identities=16%  Similarity=0.088  Sum_probs=108.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc-----------------CCC------------C
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE-----------------GLL------------D  138 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~-----------------~~~------------~  138 (298)
                      ++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|++++...                 +..            .
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            67899999999999554444435679999999999999998865421                 100            0


Q ss_pred             ceEEEECCCCC-CCC-----CCCCeeEEEecccccc----cChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHH
Q psy2408         139 KVNFLHGDALN-LPF-----DNDSFDGGWFFESIFH----MNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKE  207 (298)
Q Consensus       139 ~i~~~~~d~~~-~~~-----~~~~fD~V~~~~~l~~----~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~  207 (298)
                      .+.++.+|+.+ +|+     ++++||+|+++.+++|    ++++ .+|+++.++|||||+|++..........       
T Consensus       151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~-------  223 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYL-------  223 (289)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEE-------
T ss_pred             hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEE-------
Confidence            14677789987 553     3467999999999999    5567 9999999999999999997533211000       


Q ss_pred             HHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCC
Q psy2408         208 YVKKNIHSNFILVEHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                      .........+++.+++.++|+++||+++....+.
T Consensus       224 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  257 (289)
T 2g72_A          224 AGEARLTVVPVSEEEVREALVRSGYKVRDLRTYI  257 (289)
T ss_dssp             ETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence            0011112456789999999999999999877655

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.84  E-value=2.5e-20  Score=151.86  Aligned_cols=168  Identities=24%  Similarity=0.301  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC
Q psy2408          70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN  149 (298)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~  149 (298)
                      ......+...+.+.+.  ++.+|||+|||+|..+..+++. +.+++++|+|+.+++.+++++...+  .+++++++|+.+
T Consensus        22 ~~~~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~   96 (227)
T 1ve3_A           22 RSRIETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARK   96 (227)
T ss_dssp             HHHHHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTS
T ss_pred             HHHHHHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhc
Confidence            3445566666666653  4789999999999999999884 5599999999999999999988765  569999999999


Q ss_pred             CCCCCCCeeEEEeccc--ccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCC--hh---HHHHHHHhh-c-------
Q psy2408         150 LPFDNDSFDGGWFFES--IFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKN--DN---KFKEYVKKN-I-------  213 (298)
Q Consensus       150 ~~~~~~~fD~V~~~~~--l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~--~~---~~~~~~~~~-~-------  213 (298)
                      +++++++||+|++..+  +++..++ .+++++.++|+|||++++.++........  ..   ....+.... .       
T Consensus        97 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (227)
T 1ve3_A           97 LSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTV  176 (227)
T ss_dssp             CCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEE
T ss_pred             CCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEE
Confidence            8877789999999999  5555566 99999999999999999987653221100  00   000000000 0       


Q ss_pred             ------------ccCCCCcchHHHHHHhCCCcEEEEEeCCC
Q psy2408         214 ------------HSNFILVEHYPDLLNKSGFELIKIDDITS  242 (298)
Q Consensus       214 ------------~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  242 (298)
                                  ........++.++|+++||..++...++.
T Consensus       177 ~~~~~~~~~~~~~~~~~w~~~~~~~l~~~GF~~v~~~~~~~  217 (227)
T 1ve3_A          177 VIEFKSEQDSFRVRFNVWGKTGVELLAKLYFTKEAEEKVGN  217 (227)
T ss_dssp             EEEC-----CCEEEEECCCHHHHHHHHTTTEEEEEEEEETT
T ss_pred             EEEeccchhhheeehhhhchHHHHHHHHHhhhHHHHHHhCC
Confidence                        00011124788999999999999888764

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.84  E-value=3.8e-19  Score=154.98  Aligned_cols=162  Identities=15%  Similarity=0.214  Sum_probs=130.9

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      .....+++.+...++.+|||||||+|..+..+++.. +.+++++|+ +.+++.+++++...+++++++++.+|+.+.+++
T Consensus       177 ~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  255 (359)
T 1x19_A          177 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP  255 (359)
T ss_dssp             HHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC
T ss_pred             hhHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC
Confidence            345577788877888999999999999999999874 679999999 999999999999888877899999999987765


Q ss_pred             CCCeeEEEecccccccCh--H-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh---hccc----CCCCcchH
Q psy2408         154 NDSFDGGWFFESIFHMNH--S-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK---NIHS----NFILVEHY  223 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~--~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~  223 (298)
                      +  +|+|++..+++++++  . .+++++.++|+|||++++.++....... + ........   ....    .+++.++|
T Consensus       256 ~--~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~~~t~~e~  331 (359)
T 1x19_A          256 E--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN-P-NFDYLSHYILGAGMPFSVLGFKEQARY  331 (359)
T ss_dssp             C--CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTS-C-CHHHHHHHGGGGGSSCCCCCCCCGGGH
T ss_pred             C--CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCC-c-hHHHHHHHHHhcCCCCcccCCCCHHHH
Confidence            4  399999999999998  4 9999999999999999998877654311 1 11111111   1112    23899999


Q ss_pred             HHHHHhCCCcEEEEEeCC
Q psy2408         224 PDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       224 ~~~l~~~Gf~~~~~~~~~  241 (298)
                      .++|+++||++++...++
T Consensus       332 ~~ll~~aGf~~v~~~~~~  349 (359)
T 1x19_A          332 KEILESLGYKDVTMVRKY  349 (359)
T ss_dssp             HHHHHHHTCEEEEEEEET
T ss_pred             HHHHHHCCCceEEEEecC
Confidence            999999999999887765

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.83  E-value=8.7e-20  Score=151.96  Aligned_cols=156  Identities=22%  Similarity=0.295  Sum_probs=114.3

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      .+.+.+...+.  ++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++..     .  .++++|+.++++++
T Consensus        43 ~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~~~~~  112 (260)
T 2avn_A           43 LIGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDLPFPS  112 (260)
T ss_dssp             HHHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSCCSCT
T ss_pred             HHHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHCCCCC
Confidence            33444444443  7789999999999999999984 7899999999999999998753     1  28899999998888


Q ss_pred             CCeeEEEeccccccc-ChH-HHHHHHhhcccCCcEEEEEeCCCCCCC------CChhHHHHHHHhhc----------ccC
Q psy2408         155 DSFDGGWFFESIFHM-NHS-AALNEARRVLKSGSILTLTDLPLLSVS------KNDNKFKEYVKKNI----------HSN  216 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~-~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~------~~~~~~~~~~~~~~----------~~~  216 (298)
                      ++||+|++..++.|+ +++ .+++++.++|+|||++++..++.....      ..-...........          ...
T Consensus       113 ~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (260)
T 2avn_A          113 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSY  192 (260)
T ss_dssp             TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEE
T ss_pred             CCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEe
Confidence            999999998877766 667 999999999999999999876632100      00000001111110          112


Q ss_pred             CCCcchHHHHHHhCCCcEEEEEeCCCC
Q psy2408         217 FILVEHYPDLLNKSGFELIKIDDITSH  243 (298)
Q Consensus       217 ~~~~~~~~~~l~~~Gf~~~~~~~~~~~  243 (298)
                      +++.+++.++   +||+++....+...
T Consensus       193 ~~~~~~l~~l---aGf~~~~~~~~~~~  216 (260)
T 2avn_A          193 AFKPEDLDSL---EGFETVDIRGIGVM  216 (260)
T ss_dssp             CBCGGGGSSC---TTEEEEEEEEECSS
T ss_pred             ccCHHHHHHh---cCceEEEEECCCCc
Confidence            6788888777   99999988876544

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.83  E-value=1.3e-20  Score=154.91  Aligned_cols=158  Identities=14%  Similarity=0.196  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      .....+.+.+....  .++.+|||+|||+|..+..+++. +.+++|+|+|+.+++.++++.      .++.++++|+.++
T Consensus        25 ~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~   95 (239)
T 3bxo_A           25 AEASDIADLVRSRT--PEASSLLDVACGTGTHLEHFTKE-FGDTAGLELSEDMLTHARKRL------PDATLHQGDMRDF   95 (239)
T ss_dssp             HHHHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHH-HSEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTC
T ss_pred             HHHHHHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHc
Confidence            34444555555544  56789999999999999999985 459999999999999998874      3589999999988


Q ss_pred             CCCCCCeeEEEe-cccccccCh---H-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhH---------------------
Q psy2408         151 PFDNDSFDGGWF-FESIFHMNH---S-AALNEARRVLKSGSILTLTDLPLLSVSKNDNK---------------------  204 (298)
Q Consensus       151 ~~~~~~fD~V~~-~~~l~~~~~---~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~---------------------  204 (298)
                      ++ +++||+|++ ..+++|+++   . .+++++.++|+|||++++.++...........                     
T Consensus        96 ~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (239)
T 3bxo_A           96 RL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVRE  174 (239)
T ss_dssp             CC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecC
Confidence            76 679999995 559999954   3 99999999999999999987654432210000                     


Q ss_pred             -------HHHHHHh----------hcccCCCCcchHHHHHHhCCCcEEEEE
Q psy2408         205 -------FKEYVKK----------NIHSNFILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       205 -------~~~~~~~----------~~~~~~~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                             .......          ..+..+++.+++..+|+++||.++...
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~  225 (239)
T 3bxo_A          175 GNATRMEVHFTVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLE  225 (239)
T ss_dssp             TTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEES
T ss_pred             CCEEEEEEEEEEecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeE
Confidence                   0000000          012246789999999999999877654

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.83  E-value=1.2e-19  Score=157.67  Aligned_cols=157  Identities=13%  Similarity=0.192  Sum_probs=127.4

Q ss_pred             HHHHhCCCCC-CCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-CCCC
Q psy2408          79 IMINKTSITK-GQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-FDND  155 (298)
Q Consensus        79 ~l~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~  155 (298)
                      .+++.+.+.+ +.+|||||||+|.++..+++.. +.+++++|+ +.+++.+++.+...++.++++++.+|+.+.+ +..+
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  247 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGG  247 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTC
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCC
Confidence            5677777667 8899999999999999999874 679999999 8899999999998888778999999998865 1346


Q ss_pred             CeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHH-----hhcccCCCCcchHHHHH
Q psy2408         156 SFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVK-----KNIHSNFILVEHYPDLL  227 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l  227 (298)
                      +||+|++..++++++++   .++++++++|+|||++++.+.........+. ......     .......++.++|.++|
T Consensus       248 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~e~~~ll  326 (352)
T 3mcz_A          248 AADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPA-LSADFSLHMMVNTNHGELHPTPWIAGVV  326 (352)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSH-HHHHHHHHHHHHSTTCCCCCHHHHHHHH
T ss_pred             CccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCc-hHHHhhHHHHhhCCCCCcCCHHHHHHHH
Confidence            79999999999999986   9999999999999999999887655432111 111111     11234578899999999


Q ss_pred             HhCCCcEEEE
Q psy2408         228 NKSGFELIKI  237 (298)
Q Consensus       228 ~~~Gf~~~~~  237 (298)
                      +++||++++.
T Consensus       327 ~~aGf~~~~~  336 (352)
T 3mcz_A          327 RDAGLAVGER  336 (352)
T ss_dssp             HHTTCEEEEE
T ss_pred             HHCCCceeee
Confidence            9999999874

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.83  E-value=2.8e-20  Score=150.98  Aligned_cols=140  Identities=29%  Similarity=0.367  Sum_probs=112.0

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccc
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFH  168 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~  168 (298)
                      +.+|||+|||+|.++..++..     +++|+|+.+++.++++        ++.++++|+..+++++++||+|++..+++|
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  114 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTICF  114 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence            789999999999999888763     9999999999999876        478999999998888889999999999999


Q ss_pred             cChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHH---hhcccCCCCcchHHHHHHhCCCcEEEEEeCCCC
Q psy2408         169 MNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVK---KNIHSNFILVEHYPDLLNKSGFELIKIDDITSH  243 (298)
Q Consensus       169 ~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  243 (298)
                      ++++ .+++++.++|+|||++++.++.......  ..+.....   ......+++.+++.++|+++||++++.......
T Consensus       115 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~  191 (219)
T 1vlm_A          115 VDDPERALKEAYRILKKGGYLIVGIVDRESFLG--REYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFK  191 (219)
T ss_dssp             SSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHH--HHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEECCS
T ss_pred             ccCHHHHHHHHHHHcCCCcEEEEEEeCCccHHH--HHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecccCC
Confidence            9999 9999999999999999998876432110  01111000   012345678999999999999999887765433

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.83  E-value=2.7e-19  Score=155.95  Aligned_cols=160  Identities=17%  Similarity=0.201  Sum_probs=129.2

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC
Q psy2408          78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS  156 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  156 (298)
                      ..+++.+.+.++.+|||+|||+|..+..+++.. +.+++++|+ +.+++.+++++...++.++++++.+|+.+ +++. .
T Consensus       173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~  249 (360)
T 1tw3_A          173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-K  249 (360)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-C
T ss_pred             HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-C
Confidence            456677777788999999999999999999874 679999999 99999999999988887789999999976 4443 4


Q ss_pred             eeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCC-CCCCCCChhHHHHHHH----hhcccCCCCcchHHHHHH
Q psy2408         157 FDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLP-LLSVSKNDNKFKEYVK----KNIHSNFILVEHYPDLLN  228 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~  228 (298)
                      ||+|++..++++++++   .+++++.++|+|||++++.+.. ......  ..+.....    .......++.++|.++|+
T Consensus       250 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~  327 (360)
T 1tw3_A          250 ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSF--NEQFTELDLRMLVFLGGALRTREKWDGLAA  327 (360)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCC--SHHHHHHHHHHHHHHSCCCCBHHHHHHHHH
T ss_pred             ccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCC--cchhhhccHHHhhhcCCcCCCHHHHHHHHH
Confidence            9999999999999987   8999999999999999999887 443322  11111111    112356678999999999


Q ss_pred             hCCCcEEEEEeCCC
Q psy2408         229 KSGFELIKIDDITS  242 (298)
Q Consensus       229 ~~Gf~~~~~~~~~~  242 (298)
                      ++||++++....+.
T Consensus       328 ~aGf~~~~~~~~~~  341 (360)
T 1tw3_A          328 SAGLVVEEVRQLPS  341 (360)
T ss_dssp             HTTEEEEEEEEEEC
T ss_pred             HCCCeEEEEEeCCC
Confidence            99999998877643

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.83  E-value=2.2e-20  Score=158.10  Aligned_cols=152  Identities=19%  Similarity=0.233  Sum_probs=110.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC------------------------------
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGL------------------------------  136 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~------------------------------  136 (298)
                      ++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|++++...+.                              
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            67899999999999999999974 57999999999999999988664432                              


Q ss_pred             ---------------------------CCceEEEECCCCCCC-----CCCCCeeEEEecccccccC------hH-HHHHH
Q psy2408         137 ---------------------------LDKVNFLHGDALNLP-----FDNDSFDGGWFFESIFHMN------HS-AALNE  177 (298)
Q Consensus       137 ---------------------------~~~i~~~~~d~~~~~-----~~~~~fD~V~~~~~l~~~~------~~-~~l~~  177 (298)
                                                 +.+++|+++|+...+     +..++||+|++..+++|+.      +. .++++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                       257999999998643     4678999999999998874      34 99999


Q ss_pred             HhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHh--CCCcEEEEEeC
Q psy2408         178 ARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNK--SGFELIKIDDI  240 (298)
Q Consensus       178 ~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~Gf~~~~~~~~  240 (298)
                      ++++|+|||+|++....+................ .....+.++++..+|.+  +||..++....
T Consensus       206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~-~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~  269 (292)
T 3g07_A          206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKN-YYRIQLKPEQFSSYLTSPDVGFSSYELVAT  269 (292)
T ss_dssp             HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHH-HHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred             HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhh-hhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence            9999999999999755432211000000111111 11223447899999998  99988876543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.82  E-value=2.6e-19  Score=154.54  Aligned_cols=160  Identities=15%  Similarity=0.145  Sum_probs=128.4

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      ....+++.+...+ .+|||+|||+|..+..+++.. +.+++++|+ +.+++.+++++...++.++++++.+|+.+ +++ 
T Consensus       156 ~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-  231 (334)
T 2ip2_A          156 AFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-  231 (334)
T ss_dssp             HHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-
T ss_pred             HHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-
Confidence            3456677776666 899999999999999999874 679999999 99999999998877766789999999987 555 


Q ss_pred             CCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHH----hhcccCCCCcchHHHHH
Q psy2408         155 DSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVK----KNIHSNFILVEHYPDLL  227 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l  227 (298)
                      ++||+|++..++++++++   .++++++++|+|||++++.+........ .. ......    .......++.++|.+++
T Consensus       232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~t~~e~~~ll  309 (334)
T 2ip2_A          232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEP-SP-MSVLWDVHLFMACAGRHRTTEEVVDLL  309 (334)
T ss_dssp             SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSC-CH-HHHHHHHHHHHHHSCCCCBHHHHHHHH
T ss_pred             CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC-cc-hhHHhhhHhHhhCCCcCCCHHHHHHHH
Confidence            689999999999999876   9999999999999999999887554322 11 111111    11234556899999999


Q ss_pred             HhCCCcEEEEEeCC
Q psy2408         228 NKSGFELIKIDDIT  241 (298)
Q Consensus       228 ~~~Gf~~~~~~~~~  241 (298)
                      +++||++++....+
T Consensus       310 ~~aGf~~~~~~~~~  323 (334)
T 2ip2_A          310 GRGGFAVERIVDLP  323 (334)
T ss_dssp             HHTTEEEEEEEEET
T ss_pred             HHCCCceeEEEECC
Confidence            99999999887654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.82  E-value=1.5e-20  Score=156.82  Aligned_cols=149  Identities=19%  Similarity=0.097  Sum_probs=110.2

Q ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCC---------------------------
Q psy2408          85 SITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGL---------------------------  136 (298)
Q Consensus        85 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~---------------------------  136 (298)
                      +..++.+|||||||+|..+..++. .++ +|+|+|+|+.|++.|++.+.....                           
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~-~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAAC-DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  130 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGG-GTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHH-hhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence            446788999999999988776665 454 799999999999999987654310                           


Q ss_pred             -CCceE-EEECCCCCC-CC---CCCCeeEEEeccccccc----ChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHH
Q psy2408         137 -LDKVN-FLHGDALNL-PF---DNDSFDGGWFFESIFHM----NHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKF  205 (298)
Q Consensus       137 -~~~i~-~~~~d~~~~-~~---~~~~fD~V~~~~~l~~~----~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~  205 (298)
                       ..++. ++++|+.+. |+   ..++||+|+++.+++|+    ++. .++++++++|||||+|++..........     
T Consensus       131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~-----  205 (263)
T 2a14_A          131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM-----  205 (263)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE-----
T ss_pred             HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccce-----
Confidence             01233 889999874 43   25789999999999986    334 9999999999999999998754221100     


Q ss_pred             HHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCC
Q psy2408         206 KEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                        ..........++.+++.++|+++||++++.....
T Consensus       206 --~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~  239 (263)
T 2a14_A          206 --VGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSP  239 (263)
T ss_dssp             --ETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred             --eCCeEeeccccCHHHHHHHHHHCCCEEEEEeecc
Confidence              0000112335688999999999999999887764

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.82  E-value=7.8e-20  Score=155.04  Aligned_cols=154  Identities=14%  Similarity=0.116  Sum_probs=109.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCC-----ceEEEECCCC------CC--CCCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD-----KVNFLHGDAL------NL--PFDN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-----~i~~~~~d~~------~~--~~~~  154 (298)
                      ++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|++++...+...     ++++.+.|+.      ++  ++++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            578999999999987666666445799999999999999999987655321     2678888872      22  3456


Q ss_pred             CCeeEEEeccccccc---ChH-HHHHHHhhcccCCcEEEEEeCCCCCCCC----------Ch----hHHH--------H-
Q psy2408         155 DSFDGGWFFESIFHM---NHS-AALNEARRVLKSGSILTLTDLPLLSVSK----------ND----NKFK--------E-  207 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~---~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~----------~~----~~~~--------~-  207 (298)
                      ++||+|+|..+++++   .+. .++++++++|||||++++..++......          ..    ..+.        . 
T Consensus       128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  207 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRI  207 (302)
T ss_dssp             SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTEE
T ss_pred             CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccccccc
Confidence            899999999999875   344 9999999999999999998765211000          00    0000        0 


Q ss_pred             --HHHh----hcccCCCCcchHHHHHHhCCCcEEEEEeCC
Q psy2408         208 --YVKK----NIHSNFILVEHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       208 --~~~~----~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                        +...    .....+.+.+++.++++++||+++....+.
T Consensus       208 ~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f~  247 (302)
T 2vdw_A          208 VVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDFA  247 (302)
T ss_dssp             EEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEHH
T ss_pred             ceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecChH
Confidence              0000    011135667889999999999999886544

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.82  E-value=1.4e-19  Score=144.95  Aligned_cols=148  Identities=15%  Similarity=0.196  Sum_probs=115.8

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD  158 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  158 (298)
                      .++..+  +++ +|||+|||+|..+..+++. +.+|+++|+|+.+++.+++++...+.  ++.++++|+.++++++++||
T Consensus        23 ~~~~~~--~~~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD   96 (202)
T 2kw5_A           23 SVANQI--PQG-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWE   96 (202)
T ss_dssp             HHHHHS--CSS-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCS
T ss_pred             HHHHhC--CCC-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCcc
Confidence            344444  466 9999999999999999984 78999999999999999999887765  69999999999888788999


Q ss_pred             EEEecccccccC--hH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEE
Q psy2408         159 GGWFFESIFHMN--HS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI  235 (298)
Q Consensus       159 ~V~~~~~l~~~~--~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  235 (298)
                      +|++..  .|+.  +. .+++++.++|+|||++++.++.......      ..........+++.+++.++++  ||+++
T Consensus        97 ~v~~~~--~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~l~--Gf~v~  166 (202)
T 2kw5_A           97 GIVSIF--CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQY------NTGGPKDLDLLPKLETLQSELP--SLNWL  166 (202)
T ss_dssp             EEEEEC--CCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGG------TSCCSSSGGGCCCHHHHHHHCS--SSCEE
T ss_pred             EEEEEh--hcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccC------CCCCCCcceeecCHHHHHHHhc--CceEE
Confidence            999854  4444  44 9999999999999999999876433210      0000112245788999999998  99999


Q ss_pred             EEEeCCC
Q psy2408         236 KIDDITS  242 (298)
Q Consensus       236 ~~~~~~~  242 (298)
                      .......
T Consensus       167 ~~~~~~~  173 (202)
T 2kw5_A          167 IANNLER  173 (202)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            8776543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.82  E-value=6e-20  Score=152.84  Aligned_cols=159  Identities=18%  Similarity=0.147  Sum_probs=120.8

Q ss_pred             CCCCchhhHHhhhcCCcccccccccCCceeEee--ccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHH-
Q psy2408          27 KGNKGKKTVATLYDSPEGQIGSVLFGGHMHWGY--WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSG-  103 (298)
Q Consensus        27 ~~~~~~~~~~~~yd~~~~~~y~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~-  103 (298)
                      ........++++|+.. ..+|+..++..++.+.  |.....-+.+. ...++.+.-...+.+.++.+|||||||+|.++ 
T Consensus        61 ~~~~l~~~~~~~y~~~-~~~~E~~wa~~l~~~~~p~~~l~~fpy~~-~~~~l~~~E~~la~l~~g~rVLDIGcG~G~~ta  138 (298)
T 3fpf_A           61 EMNHALSLIRKFYVNL-GMKLEMEKAQEVIESDSPWETLRSFYFYP-RYLELLKNEAALGRFRRGERAVFIGGGPLPLTG  138 (298)
T ss_dssp             GGHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCSSHHHHHHTSTTHH-HHHHHHHHHHHHTTCCTTCEEEEECCCSSCHHH
T ss_pred             hHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCChHHhhccCCCcc-cHHHHHHHHHHHcCCCCcCEEEEECCCccHHHH
Confidence            3344456788999998 8888887766553220  11000111222 24445555556788899999999999998765 


Q ss_pred             HHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcc
Q psy2408         104 IRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVL  182 (298)
Q Consensus       104 ~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~L  182 (298)
                      ..+++..+++|+|+|+|+++++.|++++...++ ++++++++|+.+++  +++||+|++...   .+++ .+++++.++|
T Consensus       139 ~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~--d~~FDvV~~~a~---~~d~~~~l~el~r~L  212 (298)
T 3fpf_A          139 ILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID--GLEFDVLMVAAL---AEPKRRVFRNIHRYV  212 (298)
T ss_dssp             HHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG--GCCCSEEEECTT---CSCHHHHHHHHHHHC
T ss_pred             HHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC--CCCcCEEEECCC---ccCHHHHHHHHHHHc
Confidence            445554689999999999999999999999888 78999999998875  689999998654   5777 9999999999


Q ss_pred             cCCcEEEEEeC
Q psy2408         183 KSGSILTLTDL  193 (298)
Q Consensus       183 kpgG~l~i~~~  193 (298)
                      ||||++++.+.
T Consensus       213 kPGG~Lvv~~~  223 (298)
T 3fpf_A          213 DTETRIIYRTY  223 (298)
T ss_dssp             CTTCEEEEEEC
T ss_pred             CCCcEEEEEcC
Confidence            99999999764

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.81  E-value=1.4e-21  Score=173.73  Aligned_cols=164  Identities=15%  Similarity=0.207  Sum_probs=126.3

Q ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceE-EEEC
Q psy2408          67 DNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVN-FLHG  145 (298)
Q Consensus        67 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~-~~~~  145 (298)
                      ..+.....+..+.+++.+.+.++.+|||||||+|.++..+++ .+.+|+|+|+|+.+++.|+++    +++.... +...
T Consensus        86 ~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~-~g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~  160 (416)
T 4e2x_A           86 SVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQE-AGVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKA  160 (416)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHH-TTCEEEEECCCHHHHHHHHTT----TCCEECSCCSHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHH-cCCcEEEECCCHHHHHHHHHc----CCCcceeeechh
Confidence            356667788889999999888899999999999999999998 577999999999999999866    3221111 1123


Q ss_pred             CCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHH-HHHh--hcccCCCCcc
Q psy2408         146 DALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKE-YVKK--NIHSNFILVE  221 (298)
Q Consensus       146 d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~  221 (298)
                      +...+++++++||+|++.++++|++++ .++++++++|+|||++++..+....      .... .+..  ..+..+++.+
T Consensus       161 ~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~------~~~~~~~~~~~~~~~~~~s~~  234 (416)
T 4e2x_A          161 TADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGD------IVAKTSFDQIFDEHFFLFSAT  234 (416)
T ss_dssp             HHHHHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHH------HHHHTCGGGCSTTCCEECCHH
T ss_pred             hHhhcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHH------hhhhcchhhhhhhhhhcCCHH
Confidence            333345557899999999999999999 9999999999999999997655211      0000 0011  1234567889


Q ss_pred             hHHHHHHhCCCcEEEEEeCC
Q psy2408         222 HYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       222 ~~~~~l~~~Gf~~~~~~~~~  241 (298)
                      ++..+++++||++++...++
T Consensus       235 ~l~~ll~~aGf~~~~~~~~~  254 (416)
T 4e2x_A          235 SVQGMAQRCGFELVDVQRLP  254 (416)
T ss_dssp             HHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHcCCEEEEEEEcc
Confidence            99999999999999988765

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.81  E-value=2.8e-19  Score=151.48  Aligned_cols=117  Identities=21%  Similarity=0.300  Sum_probs=97.8

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC---CceEEEECCCCCCC--
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLL---DKVNFLHGDALNLP--  151 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~---~~i~~~~~d~~~~~--  151 (298)
                      .+.+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+..   .++.+..+|+..++  
T Consensus        46 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  124 (293)
T 3thr_A           46 KAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD  124 (293)
T ss_dssp             HHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred             HHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc
Confidence            344444444457789999999999999999984 779999999999999999886443321   35788999998876  


Q ss_pred             -CCCCCeeEEEec-ccccccCh-------H-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 -FDNDSFDGGWFF-ESIFHMNH-------S-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 -~~~~~fD~V~~~-~~l~~~~~-------~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                       +++++||+|++. .+++|+++       . .+++++.++|+|||++++..++
T Consensus       125 ~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          125 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             SCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence             678999999998 89999999       6 9999999999999999998654

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.81  E-value=3.4e-19  Score=154.58  Aligned_cols=157  Identities=13%  Similarity=0.090  Sum_probs=120.5

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND  155 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  155 (298)
                      ...+++.+.+.++.+|||||||+|..+..+++.. +.+++++|++ .++.  +++....++.++++++.+|+. .++|  
T Consensus       173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~p--  246 (348)
T 3lst_A          173 HLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFL-REVP--  246 (348)
T ss_dssp             HHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTT-TCCC--
T ss_pred             HHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCC-CCCC--
Confidence            4567778888888999999999999999999874 5689999994 4444  333333455568999999997 3445  


Q ss_pred             CeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChh-HH-HHHHHhhcccCCCCcchHHHHHHhC
Q psy2408         156 SFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDN-KF-KEYVKKNIHSNFILVEHYPDLLNKS  230 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~~~  230 (298)
                      +||+|++..++++++++   .+|++++++|+|||++++.+........... .. ............++.++|.++|+++
T Consensus       247 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a  326 (348)
T 3lst_A          247 HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAA  326 (348)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHT
T ss_pred             CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHC
Confidence            89999999999999988   9999999999999999999886655432111 11 1111112344567899999999999


Q ss_pred             CCcEEEEEe
Q psy2408         231 GFELIKIDD  239 (298)
Q Consensus       231 Gf~~~~~~~  239 (298)
                      ||+++++..
T Consensus       327 Gf~~~~~~~  335 (348)
T 3lst_A          327 GLRLDRVVG  335 (348)
T ss_dssp             TEEEEEEEE
T ss_pred             CCceEEEEE
Confidence            999998876

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.81  E-value=9.7e-20  Score=146.53  Aligned_cols=150  Identities=23%  Similarity=0.354  Sum_probs=114.6

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      .++.+|||+|||+|..+..++...+.+|+|+|+|+.+++.+++++...+  .++.++++|+.++++++++||+|++..++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPFKDESMSFVYSYGTI   99 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCCCCCceeEEEEcChH
Confidence            5678999999999998544444468899999999999999999988765  36899999999988888899999999999


Q ss_pred             cccC--hH-HHHHHHhhcccCCcEEEEEeCCCCCCCCCh-hHH-HHHH-----HhhcccCCCCcchHHHHHHhCCCcEEE
Q psy2408         167 FHMN--HS-AALNEARRVLKSGSILTLTDLPLLSVSKND-NKF-KEYV-----KKNIHSNFILVEHYPDLLNKSGFELIK  236 (298)
Q Consensus       167 ~~~~--~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~~~-~~~~-----~~~~~~~~~~~~~~~~~l~~~Gf~~~~  236 (298)
                      +|++  +. .+++++.++|+|||++++.++......... ... ...+     .......+++.+++..++..+||...+
T Consensus       100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~  179 (209)
T 2p8j_A          100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE  179 (209)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred             HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence            9994  44 999999999999999999887654321100 000 0000     001123567888999999999987665


Q ss_pred             EE
Q psy2408         237 ID  238 (298)
Q Consensus       237 ~~  238 (298)
                      ..
T Consensus       180 ~~  181 (209)
T 2p8j_A          180 DR  181 (209)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.81  E-value=4.2e-19  Score=149.88  Aligned_cols=139  Identities=12%  Similarity=0.122  Sum_probs=114.9

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++  +++++++|+.++++ +++||+|++..++
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~~fD~i~~~~~~  194 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-QENYDFIVSTVVF  194 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-CSCEEEEEECSSG
T ss_pred             cCCCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-cCCccEEEEccch
Confidence            47789999999999999999995 78999999999999999999998876  69999999998876 6899999999999


Q ss_pred             cccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeC
Q psy2408         167 FHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       167 ~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  240 (298)
                      +|++++   .+++++.++|+|||.+++...........         .......++.+++.+++..  |+++...+.
T Consensus       195 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~--~~~~~~~~~  260 (286)
T 3m70_A          195 MFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPC---------PLPFSFTFAENELKEYYKD--WEFLEYNEN  260 (286)
T ss_dssp             GGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC---------SSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCC---------CCCccccCCHHHHHHHhcC--CEEEEEEcc
Confidence            999765   99999999999999988766554433220         1122346778888888864  988877643

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.81  E-value=1.8e-20  Score=153.66  Aligned_cols=145  Identities=19%  Similarity=0.221  Sum_probs=107.8

Q ss_pred             hhhHHhhhcCCcccccccccC-----CceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHH
Q psy2408          32 KKTVATLYDSPEGQIGSVLFG-----GHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRL  106 (298)
Q Consensus        32 ~~~~~~~yd~~~~~~y~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l  106 (298)
                      .++.+..|+.. +..|+..-.     +..-...|..            .+.+.+.+.+ ..+|.+|||||||+|..+..+
T Consensus        13 ~e~~~~~w~~~-~~~yd~~~~~l~~~g~~vm~~we~------------~~m~~~a~~~-~~~G~rVLdiG~G~G~~~~~~   78 (236)
T 3orh_A           13 GENCSPAWGAA-PAAYDAADTHLRILGKPVMERWET------------PYMHALAAAA-SSKGGRVLEVGFGMAIAASKV   78 (236)
T ss_dssp             TCBCHHHHTTS-CEEECTTSSEEEETTEEEEEGGGH------------HHHHHHHHHH-TTTCEEEEEECCTTSHHHHHH
T ss_pred             CchhhhhHhcC-cCCCCcchhhhhhcCHHHHHHHHH------------HHHHHHHHhh-ccCCCeEEEECCCccHHHHHH
Confidence            34567888887 777765311     1111123432            2223333333 257889999999999999999


Q ss_pred             HHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCCCeeEEEe-----cccccccChH-HHHHHH
Q psy2408         107 AKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDNDSFDGGWF-----FESIFHMNHS-AALNEA  178 (298)
Q Consensus       107 ~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~-----~~~l~~~~~~-~~l~~~  178 (298)
                      ++..+.++++||+|+.+++.|++++...+  .++.++.+|+..+  ++++++||.|++     ...++|..++ .+++++
T Consensus        79 ~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~  156 (236)
T 3orh_A           79 QEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHA  156 (236)
T ss_dssp             TTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTH
T ss_pred             HHhCCcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcccccccCCceEEEeeeecccchhhhcchhhhhhhh
Confidence            88656799999999999999999988765  4688899987654  567889999974     5667788888 999999


Q ss_pred             hhcccCCcEEEEEe
Q psy2408         179 RRVLKSGSILTLTD  192 (298)
Q Consensus       179 ~r~LkpgG~l~i~~  192 (298)
                      .|+|||||+|++.+
T Consensus       157 ~rvLkPGG~l~f~~  170 (236)
T 3orh_A          157 FRLLKPGGVLTYCN  170 (236)
T ss_dssp             HHHEEEEEEEEECC
T ss_pred             hheeCCCCEEEEEe
Confidence            99999999998854

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.80  E-value=3.7e-18  Score=148.11  Aligned_cols=161  Identities=15%  Similarity=0.164  Sum_probs=127.0

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      ....+++.+.+.+..+|||||||+|..+..+++.. +.+++.+|. +.+++.+++.+...+ .++++++.+|+.+.|.+ 
T Consensus       167 ~~~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~~-  243 (353)
T 4a6d_A          167 NGRSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPLP-  243 (353)
T ss_dssp             HHHHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCCC-
T ss_pred             HHHHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCCC-
Confidence            34566777777788899999999999999999984 678999997 889999998876544 57899999999876543 


Q ss_pred             CCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHH----hhcccCCCCcchHHHHH
Q psy2408         155 DSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVK----KNIHSNFILVEHYPDLL  227 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l  227 (298)
                       .+|+|++..++|+++++   .+|+++++.|+|||+++|.+.........+. ......    ......-++.++|.++|
T Consensus       244 -~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~-~~~~~dl~ml~~~~g~ert~~e~~~ll  321 (353)
T 4a6d_A          244 -EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPL-LTQLYSLNMLVQTEGQERTPTHYHMLL  321 (353)
T ss_dssp             -CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCH-HHHHHHHHHHHSSSCCCCCHHHHHHHH
T ss_pred             -CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCH-HHHHHHHHHHHhCCCcCCCHHHHHHHH
Confidence             58999999999999987   8899999999999999999987655433122 111111    12234567899999999


Q ss_pred             HhCCCcEEEEEeCC
Q psy2408         228 NKSGFELIKIDDIT  241 (298)
Q Consensus       228 ~~~Gf~~~~~~~~~  241 (298)
                      +++||+.+++...+
T Consensus       322 ~~AGf~~v~v~~~~  335 (353)
T 4a6d_A          322 SSAGFRDFQFKKTG  335 (353)
T ss_dssp             HHHTCEEEEEECCS
T ss_pred             HHCCCceEEEEEcC
Confidence            99999999987654

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.80  E-value=2.3e-18  Score=150.29  Aligned_cols=156  Identities=12%  Similarity=0.107  Sum_probs=120.9

Q ss_pred             HHHHHHhCC-CCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          77 SRIMINKTS-ITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        77 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      ...+++.+. +.++.+|||||||+|..+..+++.. +.+++++|+ +.+++.+++.       ++++++.+|+.+ ++|.
T Consensus       191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p~  261 (368)
T 3reo_A          191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GVPK  261 (368)
T ss_dssp             HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCC
T ss_pred             HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CCCC
Confidence            455666665 6677899999999999999999874 679999999 8888776532       479999999987 6664


Q ss_pred             CCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhH--HH---HHHHh--hcccCCCCcchHH
Q psy2408         155 DSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNK--FK---EYVKK--NIHSNFILVEHYP  224 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~--~~---~~~~~--~~~~~~~~~~~~~  224 (298)
                      +  |+|++..++|++++.   .+|++++++|+|||++++.+............  ..   .+...  ......++.++|.
T Consensus       262 ~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~  339 (368)
T 3reo_A          262 G--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQ  339 (368)
T ss_dssp             C--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHH
T ss_pred             C--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHH
Confidence            4  999999999999987   89999999999999999999876554331111  11   11111  1245567899999


Q ss_pred             HHHHhCCCcEEEEEeCCCC
Q psy2408         225 DLLNKSGFELIKIDDITSH  243 (298)
Q Consensus       225 ~~l~~~Gf~~~~~~~~~~~  243 (298)
                      ++|+++||+++++......
T Consensus       340 ~ll~~AGF~~v~~~~~~~~  358 (368)
T 3reo_A          340 ALAMASGFRGFKVASCAFN  358 (368)
T ss_dssp             HHHHHTTCCEEEEEEEETT
T ss_pred             HHHHHCCCeeeEEEEeCCC
Confidence            9999999999988776543

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.80  E-value=5.2e-19  Score=145.90  Aligned_cols=151  Identities=17%  Similarity=0.135  Sum_probs=115.3

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC-----CCeeEE
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN-----DSFDGG  160 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~~fD~V  160 (298)
                      +.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++.    ..+++++++|+.+++.+.     ..||+|
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~d~v  128 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHSEIGDANI  128 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHH-SSCEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHh-CCCEEEEECCHHHHHHHHHhCc----ccCceEEECcccccccccccccccCccEE
Confidence            467889999999999999999985 4599999999999999998862    236999999998864321     249999


Q ss_pred             EecccccccC--hH-HHHHHHhhcccCCcEEEEEeCCCCCCCC----------ChhHHHHHHHhhcccCCCCcchHHHHH
Q psy2408         161 WFFESIFHMN--HS-AALNEARRVLKSGSILTLTDLPLLSVSK----------NDNKFKEYVKKNIHSNFILVEHYPDLL  227 (298)
Q Consensus       161 ~~~~~l~~~~--~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l  227 (298)
                      ++..+++|++  +. .+++++.++|+|||++++.++.......          .+............+..++.+++.+++
T Consensus       129 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (245)
T 3ggd_A          129 YMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF  208 (245)
T ss_dssp             EEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred             EEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence            9999999999  66 9999999999999999998876432100          001111112222233456889999998


Q ss_pred             HhCCCcEEEEEeCCCC
Q psy2408         228 NKSGFELIKIDDITSH  243 (298)
Q Consensus       228 ~~~Gf~~~~~~~~~~~  243 (298)
                        +||+++....++..
T Consensus       209 --aGf~~~~~~~~~~~  222 (245)
T 3ggd_A          209 --PDFEILSQGEGLFQ  222 (245)
T ss_dssp             --TTEEEEEEECCBCC
T ss_pred             --CCCEEEeccccccc
Confidence              99999988776544

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.80  E-value=4.3e-18  Score=136.45  Aligned_cols=138  Identities=15%  Similarity=0.127  Sum_probs=113.7

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      ..+...++..+.+.++.+|||+|||+|..+..+++.. ..+|+++|+|+.+++.+++++...++ ++++++++|+.+...
T Consensus        26 ~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~  104 (204)
T 3e05_A           26 QEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLD  104 (204)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCT
T ss_pred             HHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhh
Confidence            4555677888888899999999999999999999864 47999999999999999999998887 579999999976533


Q ss_pred             CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCC
Q psy2408         153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG  231 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  231 (298)
                      ..++||+|++..++.   +. .+++++.++|+|||++++......                      +.+++...++++|
T Consensus       105 ~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------------~~~~~~~~l~~~g  159 (204)
T 3e05_A          105 DLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD----------------------TLTKAVEFLEDHG  159 (204)
T ss_dssp             TSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBHH----------------------HHHHHHHHHHHTT
T ss_pred             cCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecccc----------------------cHHHHHHHHHHCC
Confidence            347899999987765   56 999999999999999999765411                      2346778899999


Q ss_pred             CcEEEEE
Q psy2408         232 FELIKID  238 (298)
Q Consensus       232 f~~~~~~  238 (298)
                      | .++..
T Consensus       160 ~-~~~~~  165 (204)
T 3e05_A          160 Y-MVEVA  165 (204)
T ss_dssp             C-EEEEE
T ss_pred             C-ceeEE
Confidence            9 44433

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.79  E-value=2.8e-18  Score=149.52  Aligned_cols=157  Identities=13%  Similarity=0.121  Sum_probs=121.3

Q ss_pred             HHHHHHHhCC-CCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          76 LSRIMINKTS-ITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        76 ~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ....+++.+. ..+..+|||||||+|..+..+++.. +.+++++|+ +.+++.+++.       ++++++.+|+.+ ++|
T Consensus       188 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p  258 (364)
T 3p9c_A          188 ITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK-EVP  258 (364)
T ss_dssp             HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCC
T ss_pred             HHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC-CCC
Confidence            3455666665 6778899999999999999999874 679999999 8888776532       479999999988 776


Q ss_pred             CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHH-----HHHHHh--hcccCCCCcchH
Q psy2408         154 NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKF-----KEYVKK--NIHSNFILVEHY  223 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~  223 (298)
                      .+  |+|++..+++++++.   .+|++++++|+|||++++.+.............     ..+...  ......++.++|
T Consensus       259 ~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~  336 (364)
T 3p9c_A          259 SG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREF  336 (364)
T ss_dssp             CC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHH
T ss_pred             CC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHH
Confidence            54  999999999999876   899999999999999999998765533211111     111111  123456788999


Q ss_pred             HHHHHhCCCcEEEEEeCCCC
Q psy2408         224 PDLLNKSGFELIKIDDITSH  243 (298)
Q Consensus       224 ~~~l~~~Gf~~~~~~~~~~~  243 (298)
                      .++|+++||+++++......
T Consensus       337 ~~ll~~AGF~~v~~~~~~~~  356 (364)
T 3p9c_A          337 QALARGAGFTGVKSTYIYAN  356 (364)
T ss_dssp             HHHHHHTTCCEEEEEEEETT
T ss_pred             HHHHHHCCCceEEEEEcCCc
Confidence            99999999999998776543

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.79  E-value=1.7e-18  Score=137.47  Aligned_cols=127  Identities=19%  Similarity=0.217  Sum_probs=108.7

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec-c
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF-E  164 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~-~  164 (298)
                      ++++.+|||+|||+|..+..+++. +.+++++|+|+.+++.+++++      .++.+++.|+.++++++++||+|++. .
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~~D~i~~~~~  116 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQISETDFDLIVSAGN  116 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSCCCCCCEEEEEECCC
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCCCCCCceeEEEECCc
Confidence            467889999999999999999985 789999999999999999875      24889999999888777899999998 7


Q ss_pred             cccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEe
Q psy2408         165 SIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDD  239 (298)
Q Consensus       165 ~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  239 (298)
                      +++|+..+   .+++++.++|+|||.+++......                    .++.+++..+++++||.++....
T Consensus       117 ~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~--------------------~~~~~~~~~~l~~~Gf~~~~~~~  174 (195)
T 3cgg_A          117 VMGFLAEDGREPALANIHRALGADGRAVIGFGAGR--------------------GWVFGDFLEVAERVGLELENAFE  174 (195)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS--------------------SCCHHHHHHHHHHHTEEEEEEES
T ss_pred             HHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC--------------------CcCHHHHHHHHHHcCCEEeeeec
Confidence            88888654   999999999999999999754421                    14567899999999999887654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.79  E-value=2.9e-18  Score=137.38  Aligned_cols=139  Identities=19%  Similarity=0.194  Sum_probs=113.0

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+...++..+.+.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|++++...+++++++++++|+.+....
T Consensus        41 ~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~  119 (204)
T 3njr_A           41 SPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD  119 (204)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc
Confidence            344556777778889999999999999999999996 8899999999999999999999988876899999999884223


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCc
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFE  233 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  233 (298)
                      .++||+|++...+   .. .+++++.++|+|||++++.....       .               +..++...+++.|++
T Consensus       120 ~~~~D~v~~~~~~---~~-~~l~~~~~~LkpgG~lv~~~~~~-------~---------------~~~~~~~~l~~~g~~  173 (204)
T 3njr_A          120 LPLPEAVFIGGGG---SQ-ALYDRLWEWLAPGTRIVANAVTL-------E---------------SETLLTQLHARHGGQ  173 (204)
T ss_dssp             SCCCSEEEECSCC---CH-HHHHHHHHHSCTTCEEEEEECSH-------H---------------HHHHHHHHHHHHCSE
T ss_pred             CCCCCEEEECCcc---cH-HHHHHHHHhcCCCcEEEEEecCc-------c---------------cHHHHHHHHHhCCCc
Confidence            3579999987644   23 49999999999999999976551       1               124666788888988


Q ss_pred             EEEEEe
Q psy2408         234 LIKIDD  239 (298)
Q Consensus       234 ~~~~~~  239 (298)
                      +..+..
T Consensus       174 i~~i~~  179 (204)
T 3njr_A          174 LLRIDI  179 (204)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            777553

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.79  E-value=5.8e-19  Score=142.76  Aligned_cols=115  Identities=17%  Similarity=0.215  Sum_probs=99.7

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      +....+...+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...   .+++++++|+.+++ ++
T Consensus        38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~-~~  112 (216)
T 3ofk_A           38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTKRW---SHISWAATDILQFS-TA  112 (216)
T ss_dssp             HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHHHHHHHHTTTC---SSEEEEECCTTTCC-CS
T ss_pred             HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcccC---CCeEEEEcchhhCC-CC
Confidence            44455555666677889999999999999999985 579999999999999999987653   37999999999987 67


Q ss_pred             CCeeEEEecccccccChH----HHHHHHhhcccCCcEEEEEeCC
Q psy2408         155 DSFDGGWFFESIFHMNHS----AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~----~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ++||+|++..+++|++++    .+++++.++|+|||.+++.++.
T Consensus       113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  156 (216)
T 3ofk_A          113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR  156 (216)
T ss_dssp             CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            899999999999999975    6799999999999999997654

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.79  E-value=3e-19  Score=148.92  Aligned_cols=150  Identities=18%  Similarity=0.121  Sum_probs=114.4

Q ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCC---------------------------
Q psy2408          85 SITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGL---------------------------  136 (298)
Q Consensus        85 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~---------------------------  136 (298)
                      ...++.+|||+|||+|.++..++.. +. +|+|+|+|+.+++.+++++...+.                           
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACE-SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK  131 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhc-ccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence            4457789999999999999888874 44 999999999999999988764321                           


Q ss_pred             -CCce-EEEECCCCCCC-CCC---CCeeEEEeccccc----ccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHH
Q psy2408         137 -LDKV-NFLHGDALNLP-FDN---DSFDGGWFFESIF----HMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKF  205 (298)
Q Consensus       137 -~~~i-~~~~~d~~~~~-~~~---~~fD~V~~~~~l~----~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~  205 (298)
                       ..++ .++++|+.+.+ +++   ++||+|++..+++    +++++ .+++++.++|+|||++++.+........     
T Consensus       132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~-----  206 (265)
T 2i62_A          132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYM-----  206 (265)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE-----
T ss_pred             hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEE-----
Confidence             0127 89999998863 345   7999999999999    55566 9999999999999999998754221100     


Q ss_pred             HHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCC
Q psy2408         206 KEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITS  242 (298)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  242 (298)
                        ..........++.+++.++|+++||+++.......
T Consensus       207 --~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~  241 (265)
T 2i62_A          207 --IGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ  241 (265)
T ss_dssp             --ETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECC
T ss_pred             --cCCccccccccCHHHHHHHHHHCCCEEEEEEEecc
Confidence              00111123456778999999999999999887653

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.79  E-value=2.2e-18  Score=135.91  Aligned_cols=150  Identities=13%  Similarity=0.118  Sum_probs=106.6

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-CCC
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-FDN  154 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~  154 (298)
                      +...++.. .+.++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.|++++...++ .++++++.+...++ +++
T Consensus        11 ~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~   87 (185)
T 3mti_A           11 MSHDFLAE-VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVR   87 (185)
T ss_dssp             HHHHHHHT-TCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCC
T ss_pred             HHHHHHHH-hCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhcc
Confidence            33444433 3468899999999999999999996 88999999999999999999998887 67999998877752 446


Q ss_pred             CCeeEEEecc-cccc-------c-ChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHH
Q psy2408         155 DSFDGGWFFE-SIFH-------M-NHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP  224 (298)
Q Consensus       155 ~~fD~V~~~~-~l~~-------~-~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (298)
                      ++||+|+++. .+.+       . .+. .+++++.++|||||++++..+.......  .....            ..++.
T Consensus        88 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--~~~~~------------~~~~~  153 (185)
T 3mti_A           88 EPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGD--MEKDA------------VLEYV  153 (185)
T ss_dssp             SCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------C--HHHHH------------HHHHH
T ss_pred             CCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCH--HHHHH------------HHHHH
Confidence            8899998763 2222       1 222 8899999999999999998765332211  11111            22445


Q ss_pred             HHHHhCCCcEEEEEeCCC
Q psy2408         225 DLLNKSGFELIKIDDITS  242 (298)
Q Consensus       225 ~~l~~~Gf~~~~~~~~~~  242 (298)
                      ..+...+|.+.....+..
T Consensus       154 ~~l~~~~~~~~~~~~~~~  171 (185)
T 3mti_A          154 IGLDQRVFTAMLYQPLNQ  171 (185)
T ss_dssp             HHSCTTTEEEEEEEESSC
T ss_pred             HhCCCceEEEEEehhhcc
Confidence            555667888888776653

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.78  E-value=1e-18  Score=141.24  Aligned_cols=143  Identities=13%  Similarity=0.159  Sum_probs=107.3

Q ss_pred             HhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC---CCCCCC
Q psy2408          82 NKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL---PFDNDS  156 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~  156 (298)
                      +.+.++||.+|||+|||+|.++..+++..  ..+|+++|+|+.|++.+++.+...   .|+..+..|....   ++..++
T Consensus        71 ~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~~~~~~  147 (233)
T 4df3_A           71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYRHLVEG  147 (233)
T ss_dssp             SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGTTTCCC
T ss_pred             hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccccccce
Confidence            45678999999999999999999999974  469999999999999999887654   4788999988663   456688


Q ss_pred             eeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEE
Q psy2408         157 FDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI  235 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  235 (298)
                      +|+|++.  +.+..++ .++.++.++|||||+++++.........             .+......+..+.|+++||+++
T Consensus       148 vDvVf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~-------------~p~~~~~~~ev~~L~~~GF~l~  212 (233)
T 4df3_A          148 VDGLYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVT-------------TEPSEVYKREIKTLMDGGLEIK  212 (233)
T ss_dssp             EEEEEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHH-------------TCCCHHHHHHHHHHHHTTCCEE
T ss_pred             EEEEEEe--ccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCC-------------CChHHHHHHHHHHHHHCCCEEE
Confidence            9998853  4445566 9999999999999999997543211000             0000011234567889999999


Q ss_pred             EEEeCCC
Q psy2408         236 KIDDITS  242 (298)
Q Consensus       236 ~~~~~~~  242 (298)
                      +..++..
T Consensus       213 e~i~L~p  219 (233)
T 4df3_A          213 DVVHLDP  219 (233)
T ss_dssp             EEEECTT
T ss_pred             EEEccCC
Confidence            8877644

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.78  E-value=2e-19  Score=147.60  Aligned_cols=107  Identities=23%  Similarity=0.253  Sum_probs=88.1

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCCCeeEEEe-
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDNDSFDGGWF-  162 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~-  162 (298)
                      +.++.+|||+|||+|..+..+++....+|+|+|+|+.|++.|+++....+  .++.++++|+.++  ++++++||+|++ 
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d  135 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYD  135 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEEC
Confidence            35788999999999999999977434489999999999999999887665  4799999999887  788899999998 


Q ss_pred             cccc--c--ccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         163 FESI--F--HMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       163 ~~~l--~--~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ...+  .  +..+. .++++++++|||||++++.+..
T Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            4443  1  22223 7799999999999999987543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.78  E-value=3.1e-18  Score=143.30  Aligned_cols=159  Identities=14%  Similarity=0.088  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHhCC-CCCCCeEEEeCCCC---CHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC
Q psy2408          72 GSDKLSRIMINKTS-ITKGQRFIDIGCGF---GLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD  146 (298)
Q Consensus        72 ~~~~~~~~l~~~~~-~~~~~~vLDiGcG~---G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d  146 (298)
                      ........+++.+. ..+..+|||||||+   |.++..+.+. .+.+|+++|+|+.|++.+++++..   ..+++++++|
T Consensus        60 ~~~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D  136 (274)
T 2qe6_A           60 ENRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTAD  136 (274)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECC
T ss_pred             HHhHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEee
Confidence            34455555555553 23457999999999   9887766654 468999999999999999998853   2579999999


Q ss_pred             CCCCC-----------CCCCCeeEEEecccccccCh--H-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHH-h
Q psy2408         147 ALNLP-----------FDNDSFDGGWFFESIFHMNH--S-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVK-K  211 (298)
Q Consensus       147 ~~~~~-----------~~~~~fD~V~~~~~l~~~~~--~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~  211 (298)
                      +.+.+           ++.++||+|++..+++|+++  + .++++++++|+|||+|++.+..... ..........+. .
T Consensus       137 ~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~-~~~~~~~~~~~~~~  215 (274)
T 2qe6_A          137 VRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG-LPAQQKLARITREN  215 (274)
T ss_dssp             TTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS-CHHHHHHHHHHHHH
T ss_pred             CCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc-hHHHHHHHHHHHhc
Confidence            97631           23358999999999999998  5 9999999999999999999877532 110011111111 1


Q ss_pred             hcccCCCCcchHHHHHHhCCCcEEE
Q psy2408         212 NIHSNFILVEHYPDLLNKSGFELIK  236 (298)
Q Consensus       212 ~~~~~~~~~~~~~~~l~~~Gf~~~~  236 (298)
                      .....+++.+++.++|  .||++++
T Consensus       216 ~~~~~~~s~~ei~~~l--~G~~l~~  238 (274)
T 2qe6_A          216 LGEGWARTPEEIERQF--GDFELVE  238 (274)
T ss_dssp             HSCCCCBCHHHHHHTT--TTCEECT
T ss_pred             CCCCccCCHHHHHHHh--CCCeEcc
Confidence            2234567899999998  5997665

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.78  E-value=3.1e-18  Score=134.12  Aligned_cols=140  Identities=16%  Similarity=0.133  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-C
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-L  150 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~  150 (298)
                      ...+...+++.+.+.++.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.+++++...+++.++ +++.|..+ +
T Consensus        10 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~   88 (178)
T 3hm2_A           10 KQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAF   88 (178)
T ss_dssp             HHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGG
T ss_pred             HHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhh
Confidence            35566777788888889999999999999999999864 679999999999999999999988887678 88888855 3


Q ss_pred             CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKS  230 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  230 (298)
                      +...++||+|++..++++   ..+++++.++|+|||++++......                      +...+...+++.
T Consensus        89 ~~~~~~~D~i~~~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~~----------------------~~~~~~~~~~~~  143 (178)
T 3hm2_A           89 DDVPDNPDVIFIGGGLTA---PGVFAAAWKRLPVGGRLVANAVTVE----------------------SEQMLWALRKQF  143 (178)
T ss_dssp             GGCCSCCSEEEECC-TTC---TTHHHHHHHTCCTTCEEEEEECSHH----------------------HHHHHHHHHHHH
T ss_pred             hccCCCCCEEEECCcccH---HHHHHHHHHhcCCCCEEEEEeeccc----------------------cHHHHHHHHHHc
Confidence            322378999999988876   5789999999999999999876511                      123455677777


Q ss_pred             CCcEEEEE
Q psy2408         231 GFELIKID  238 (298)
Q Consensus       231 Gf~~~~~~  238 (298)
                      |+.+....
T Consensus       144 ~~~~~~~~  151 (178)
T 3hm2_A          144 GGTISSFA  151 (178)
T ss_dssp             CCEEEEEE
T ss_pred             CCeeEEEE
Confidence            77766543

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.78  E-value=2.3e-19  Score=145.45  Aligned_cols=159  Identities=14%  Similarity=0.100  Sum_probs=108.4

Q ss_pred             HHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHH----HhcCCCCceEEEECCCCCCCCCCC
Q psy2408          81 INKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTA----KAEGLLDKVNFLHGDALNLPFDND  155 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~----~~~~~~~~i~~~~~d~~~~~~~~~  155 (298)
                      +..+.+.++.+|||+|||+|.++..+++.. +.+|+|+|+|+.|++.+.+.+    ...++ +++.++++|+.+++++++
T Consensus        20 ~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~   98 (218)
T 3mq2_A           20 FEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLSG   98 (218)
T ss_dssp             HHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCCC
T ss_pred             HHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCCC
Confidence            344446788899999999999999999964 689999999999888643333    23444 379999999999988766


Q ss_pred             CeeEEEe---cccc--cccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHh
Q psy2408         156 SFDGGWF---FESI--FHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNK  229 (298)
Q Consensus       156 ~fD~V~~---~~~l--~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  229 (298)
                      + |.|++   ...+  +|++++ .+++++.++|||||++++.......... ...   ..........+..+.+..++++
T Consensus        99 ~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~l~~~l~~  173 (218)
T 3mq2_A           99 V-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPS-VPE---VGEHPEPTPDSADEWLAPRYAE  173 (218)
T ss_dssp             E-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTB-CGG---GTTCCCCCHHHHHHHHHHHHHH
T ss_pred             C-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecccccccc-ccc---cccCCccchHHHHHHHHHHHHH
Confidence            5 66653   2333  277888 9999999999999999995422111100 000   0000000001113447789999


Q ss_pred             CCCcEEEEEeCCCCcc
Q psy2408         230 SGFELIKIDDITSHVM  245 (298)
Q Consensus       230 ~Gf~~~~~~~~~~~~~  245 (298)
                      +||++.+...+.....
T Consensus       174 aGf~i~~~~~~~~~~~  189 (218)
T 3mq2_A          174 AGWKLADCRYLEPEEV  189 (218)
T ss_dssp             TTEEEEEEEEECHHHH
T ss_pred             cCCCceeeeccchhhh
Confidence            9999999887655443

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.77  E-value=3.2e-18  Score=149.73  Aligned_cols=153  Identities=12%  Similarity=0.123  Sum_probs=118.7

Q ss_pred             HHHHHHhCC-CCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          77 SRIMINKTS-ITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        77 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      ...+++.+. +.++.+|||||||+|..+..+++.. +.+++++|+ +.+++.+++.       .+++++.+|+.+ +++.
T Consensus       197 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~  267 (372)
T 1fp1_D          197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFA-SVPQ  267 (372)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCC
T ss_pred             HHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCccc-CCCC
Confidence            456677765 6678899999999999999999874 678999999 8898877641       359999999987 6654


Q ss_pred             CCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChh-H-HHHHHHh----hcccCCCCcchHHH
Q psy2408         155 DSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDN-K-FKEYVKK----NIHSNFILVEHYPD  225 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-~-~~~~~~~----~~~~~~~~~~~~~~  225 (298)
                        ||+|++..+++|++++   .+|++++++|+|||++++.+........... . .......    ......++.++|.+
T Consensus       268 --~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~  345 (372)
T 1fp1_D          268 --GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEK  345 (372)
T ss_dssp             --EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHH
T ss_pred             --CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHH
Confidence              9999999999999987   9999999999999999999876544322110 0 1111111    12345678999999


Q ss_pred             HHHhCCCcEEEEEeC
Q psy2408         226 LLNKSGFELIKIDDI  240 (298)
Q Consensus       226 ~l~~~Gf~~~~~~~~  240 (298)
                      +|+++||++++....
T Consensus       346 ll~~aGf~~~~~~~~  360 (372)
T 1fp1_D          346 LSKLSGFSKFQVACR  360 (372)
T ss_dssp             HHHHTTCSEEEEEEE
T ss_pred             HHHHCCCceEEEEEc
Confidence            999999999988764

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.77  E-value=1.1e-17  Score=154.43  Aligned_cols=120  Identities=17%  Similarity=0.205  Sum_probs=101.1

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhc------CCCCceEEEEC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAE------GLLDKVNFLHG  145 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~------~~~~~i~~~~~  145 (298)
                      ....+.+++.+...++.+|||||||+|.++..+++..+  .+|+|+|+|+.|++.|++++...      ++ .+++++++
T Consensus       707 eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqG  785 (950)
T 3htx_A          707 KQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDG  785 (950)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEES
T ss_pred             HHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEEC
Confidence            34445555555555788999999999999999998542  79999999999999999876532      33 37999999


Q ss_pred             CCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCC
Q psy2408         146 DALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPL  195 (298)
Q Consensus       146 d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~  195 (298)
                      |+.++++++++||+|++..+++|++++   .+++++.++|+|| .+++.+++.
T Consensus       786 Da~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~  837 (950)
T 3htx_A          786 SILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY  837 (950)
T ss_dssp             CTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred             chHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence            999998888999999999999999987   5999999999999 888887663

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.77  E-value=3.4e-18  Score=137.16  Aligned_cols=138  Identities=15%  Similarity=0.098  Sum_probs=110.4

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+.+.+...  +.++.+|||+|||+|.++..+++....+|+++|+|+.+++.|++++...++.. ++++++|+.+.+  
T Consensus        48 ~~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~--  122 (205)
T 3grz_A           48 QLAMLGIERA--MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV--  122 (205)
T ss_dssp             HHHHHHHHHH--CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC--
T ss_pred             HHHHHHHHHh--ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC--
Confidence            3344444333  35788999999999999999888434599999999999999999999888764 999999997753  


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCc
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFE  233 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  233 (298)
                      +++||+|++..+++++  ..+++++.++|+|||++++.++...                      +.+++..+++++||+
T Consensus       123 ~~~fD~i~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~----------------------~~~~~~~~~~~~Gf~  178 (205)
T 3grz_A          123 DGKFDLIVANILAEIL--LDLIPQLDSHLNEDGQVIFSGIDYL----------------------QLPKIEQALAENSFQ  178 (205)
T ss_dssp             CSCEEEEEEESCHHHH--HHHGGGSGGGEEEEEEEEEEEEEGG----------------------GHHHHHHHHHHTTEE
T ss_pred             CCCceEEEECCcHHHH--HHHHHHHHHhcCCCCEEEEEecCcc----------------------cHHHHHHHHHHcCCc
Confidence            5899999998776542  2889999999999999999765421                      245788899999999


Q ss_pred             EEEEEeC
Q psy2408         234 LIKIDDI  240 (298)
Q Consensus       234 ~~~~~~~  240 (298)
                      ++.....
T Consensus       179 ~~~~~~~  185 (205)
T 3grz_A          179 IDLKMRA  185 (205)
T ss_dssp             EEEEEEE
T ss_pred             eEEeecc
Confidence            9886654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.76  E-value=2.6e-19  Score=145.57  Aligned_cols=156  Identities=19%  Similarity=0.221  Sum_probs=103.1

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCC-HHHHHHH---HHHHHhcCCCCceEEEECCCCCCCCC-CCCeeEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITIS-KFQQESA---MKTAKAEGLLDKVNFLHGDALNLPFD-NDSFDGG  160 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s-~~~l~~a---~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V  160 (298)
                      .++.+|||||||+|..+..+++. .+.+|+|+|+| +.|++.|   ++++...+++ ++.++++|+..+|.. .+.+|.|
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~~d~v~~i  101 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFELKNIADSI  101 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGGTTCEEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhccCeEEEE
Confidence            57789999999999999999964 57799999999 7777666   7777676764 699999999988531 1445555


Q ss_pred             Eecccccc-----cChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHH-hhcccCCCCcchHHHHHHhCCCc
Q psy2408         161 WFFESIFH-----MNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVK-KNIHSNFILVEHYPDLLNKSGFE  233 (298)
Q Consensus       161 ~~~~~l~~-----~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~  233 (298)
                      +++....+     ..+. .++++++|+|||||++++..........  ... .... ......+...+++..+++++||+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~el~~~l~~aGf~  178 (225)
T 3p2e_A          102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEE--AEI-KKRGLPLLSKAYFLSEQYKAELSNSGFR  178 (225)
T ss_dssp             EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------CCHHHHHSHHHHHHHHHHTCE
T ss_pred             EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchh--chh-hhcCCCCCChhhcchHHHHHHHHHcCCC
Confidence            54332111     1122 7899999999999999994332221100  000 0000 00011112223589999999999


Q ss_pred             EEEEEeCCCCccc
Q psy2408         234 LIKIDDITSHVMP  246 (298)
Q Consensus       234 ~~~~~~~~~~~~~  246 (298)
                      +.....++..+..
T Consensus       179 v~~~~~~~~~~~~  191 (225)
T 3p2e_A          179 IDDVKELDNEYVK  191 (225)
T ss_dssp             EEEEEEECHHHHT
T ss_pred             eeeeeecCHHHHH
Confidence            9999888766554

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.76  E-value=8.9e-19  Score=137.12  Aligned_cols=158  Identities=18%  Similarity=0.095  Sum_probs=114.7

Q ss_pred             HhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC---CCCCee
Q psy2408          82 NKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF---DNDSFD  158 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~fD  158 (298)
                      ..+++.+|.+|||+|||.               +++|+|+.|++.|+++..     .+++++++|+.++++   ++++||
T Consensus         6 ~~~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD   65 (176)
T 2ld4_A            6 ADFGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAHKESSFD   65 (176)
T ss_dssp             TTTTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCCCSSCEE
T ss_pred             hccCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccCCCCCEe
Confidence            345678999999999996               139999999999998853     248999999998876   788999


Q ss_pred             EEEeccccccc-ChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEE
Q psy2408         159 GGWFFESIFHM-NHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIK  236 (298)
Q Consensus       159 ~V~~~~~l~~~-~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  236 (298)
                      +|++..+++|+ ++. .++++++|+|||||++++..+.......             .....+.+++.++|+++|| +. 
T Consensus        66 ~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~aGf-i~-  130 (176)
T 2ld4_A           66 IILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDN-------------NSKVKTASKLCSALTLSGL-VE-  130 (176)
T ss_dssp             EEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCS-------------SSSSCCHHHHHHHHHHTTC-EE-
T ss_pred             EEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEccccccccc-------------ccccCCHHHHHHHHHHCCC-cE-
Confidence            99999999999 777 9999999999999999996543211100             1223467899999999999 55 


Q ss_pred             EEeCCCCcccchHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhccccccEEEEEEEeC
Q psy2408         237 IDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYMSKNLGYIIVTAKKI  298 (298)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~k~  298 (298)
                      ..........                        .+..+.|...+......+.+++++|+||
T Consensus       131 ~~~~~~~~~~------------------------~~~~~~~~~~~g~~~~~~~~~~~~a~Kp  168 (176)
T 2ld4_A          131 VKELQREPLT------------------------PEEVQSVREHLGHESDNLLFVQITGKKP  168 (176)
T ss_dssp             EEEEEEECCC------------------------HHHHHHHHHHTCCCCSSEEEEEEEEECC
T ss_pred             eecCcccCCC------------------------HHHHHHHHHHhcccCCceEEEEEeccCC
Confidence            5543321111                        1222234433332234567999999997

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.76  E-value=9.2e-18  Score=136.72  Aligned_cols=121  Identities=16%  Similarity=0.201  Sum_probs=101.6

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC-CCCCCC-CCCeeEEEecc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA-LNLPFD-NDSFDGGWFFE  164 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~-~~~fD~V~~~~  164 (298)
                      .++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++.      .+++++++|+ ..+|++ +++||+|++. 
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~~~fD~v~~~-  118 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARANA------PHADVYEWNGKGELPAGLGAPFGLIVSR-  118 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHC------TTSEEEECCSCSSCCTTCCCCEEEEEEE-
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhC------CCceEEEcchhhccCCcCCCCEEEEEeC-
Confidence            57889999999999999999995 789999999999999999881      4689999999 567777 7899999987 


Q ss_pred             cccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCC
Q psy2408         165 SIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSH  243 (298)
Q Consensus       165 ~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  243 (298)
                           .++ .+++++.++|+|||+++.                       .....+.+++...++++||.++........
T Consensus       119 -----~~~~~~l~~~~~~LkpgG~l~~-----------------------~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  170 (226)
T 3m33_A          119 -----RGPTSVILRLPELAAPDAHFLY-----------------------VGPRLNVPEVPERLAAVGWDIVAEDHVSVL  170 (226)
T ss_dssp             -----SCCSGGGGGHHHHEEEEEEEEE-----------------------EESSSCCTHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             -----CCHHHHHHHHHHHcCCCcEEEE-----------------------eCCcCCHHHHHHHHHHCCCeEEEEEeeeec
Confidence                 355 899999999999999981                       112345678999999999999887765443

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.76  E-value=1.9e-17  Score=135.12  Aligned_cols=132  Identities=17%  Similarity=0.168  Sum_probs=105.2

Q ss_pred             CCCCCCeEEEeCCC-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-CCCCCCeeEEEe
Q psy2408          85 SITKGQRFIDIGCG-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-PFDNDSFDGGWF  162 (298)
Q Consensus        85 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~  162 (298)
                      .+.++.+|||+||| +|.++..+++..+.+|+|+|+|+.+++.|++++...++  +++++++|+..+ ++++++||+|++
T Consensus        52 ~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~  129 (230)
T 3evz_A           52 FLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFS  129 (230)
T ss_dssp             TCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred             hcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEE
Confidence            35688999999999 99999999986578999999999999999999998887  699999997544 455689999998


Q ss_pred             cccccccCh-------------------H-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcch
Q psy2408         163 FESIFHMNH-------------------S-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEH  222 (298)
Q Consensus       163 ~~~l~~~~~-------------------~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (298)
                      +-.+.+..+                   . .+++++.++|+|||++++......                     ....+
T Consensus       130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------~~~~~  188 (230)
T 3evz_A          130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE---------------------KLLNV  188 (230)
T ss_dssp             CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH---------------------HHHHH
T ss_pred             CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH---------------------hHHHH
Confidence            866554332                   3 889999999999999998643310                     11346


Q ss_pred             HHHHHHhCCCcEEEEEe
Q psy2408         223 YPDLLNKSGFELIKIDD  239 (298)
Q Consensus       223 ~~~~l~~~Gf~~~~~~~  239 (298)
                      +.+.+++.||.+.....
T Consensus       189 ~~~~l~~~g~~~~~~~~  205 (230)
T 3evz_A          189 IKERGIKLGYSVKDIKF  205 (230)
T ss_dssp             HHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHcCCceEEEEe
Confidence            78889999998776654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.76  E-value=7.8e-18  Score=139.39  Aligned_cols=141  Identities=21%  Similarity=0.416  Sum_probs=107.7

Q ss_pred             hhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEE
Q psy2408          37 TLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDG  116 (298)
Q Consensus        37 ~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~  116 (298)
                      ++|+.. ++.|+..+....           .. ..........++......++.+|||+|||+|..+..+++ .+.+|+|
T Consensus         3 ~~y~~~-a~~yd~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~-~~~~v~g   68 (252)
T 1wzn_A            3 ELYTLL-AEYYDTIYRRRI-----------ER-VKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAE-RGYEVVG   68 (252)
T ss_dssp             GGGTTT-GGGHHHHTHHHH-----------HT-HHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHH-TTCEEEE
T ss_pred             hHHHHH-HHHHHHHHhcch-----------hh-hHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHH-CCCeEEE
Confidence            467777 777776532100           00 112234455666666666788999999999999999998 4789999


Q ss_pred             EeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecc-cccccCh--H-HHHHHHhhcccCCcEEEEEe
Q psy2408         117 ITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE-SIFHMNH--S-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       117 vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~-~l~~~~~--~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +|+|+.+++.+++++...++  ++.++++|+.+++++ ++||+|++.. ++.++..  . .+++++.++|+|||.+++..
T Consensus        69 vD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A           69 LDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             EESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence            99999999999999887764  589999999988764 6899999863 4555543  3 99999999999999998865


Q ss_pred             CC
Q psy2408         193 LP  194 (298)
Q Consensus       193 ~~  194 (298)
                      ++
T Consensus       146 ~~  147 (252)
T 1wzn_A          146 PC  147 (252)
T ss_dssp             EC
T ss_pred             cc
Confidence            43

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.76  E-value=8.7e-18  Score=143.64  Aligned_cols=108  Identities=16%  Similarity=0.161  Sum_probs=90.8

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC------CCCceEEEECCCCCCC----CC--C
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG------LLDKVNFLHGDALNLP----FD--N  154 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~------~~~~i~~~~~d~~~~~----~~--~  154 (298)
                      .++.+|||+|||+|..+..+++..+.+|+++|+|+.+++.++++....+      ...++.++++|+..++    ++  +
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            3678999999999999999988556799999999999999999887542      2246899999998875    53  4


Q ss_pred             CCeeEEEeccccccc-C---hH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         155 DSFDGGWFFESIFHM-N---HS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~-~---~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ++||+|++..+++++ .   +. .+++++.++|+|||.+++..+.
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN  157 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            589999999999887 3   34 9999999999999999998765

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.75  E-value=3.8e-18  Score=147.11  Aligned_cols=172  Identities=15%  Similarity=0.127  Sum_probs=122.8

Q ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHH-------HhcCC-C
Q psy2408          67 DNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTA-------KAEGL-L  137 (298)
Q Consensus        67 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~-------~~~~~-~  137 (298)
                      ..+.+........+++.+.+.++.+|||||||+|.++..++...++ +++|||+|+.+++.|++..       ...++ .
T Consensus       152 ~vYGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~  231 (438)
T 3uwp_A          152 EVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKH  231 (438)
T ss_dssp             GGGGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCC
T ss_pred             cccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            4556667788888999999999999999999999999999986666 4999999999999998754       34455 2


Q ss_pred             CceEEEECCCCCCCCCC--CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChh-HHHHHHHhhc
Q psy2408         138 DKVNFLHGDALNLPFDN--DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDN-KFKEYVKKNI  213 (298)
Q Consensus       138 ~~i~~~~~d~~~~~~~~--~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~  213 (298)
                      .+++++++|+.++++++  ..||+|+++.++ +.++. ..|.++.++|||||+|++.+........... ..........
T Consensus       232 ~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~~i~~rnl~di~~il~  310 (438)
T 3uwp_A          232 AEYTLERGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMR  310 (438)
T ss_dssp             CEEEEEECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSSCTTCCCCSSSTTSGGGSEE
T ss_pred             CCeEEEECcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeecccCCCCCCCcccccChhhhhe
Confidence            57999999999987643  479999987665 34555 8899999999999999998877655332110 0010111111


Q ss_pred             ccCCCCcchHHHHHHhCCCcEEEEEe
Q psy2408         214 HSNFILVEHYPDLLNKSGFELIKIDD  239 (298)
Q Consensus       214 ~~~~~~~~~~~~~l~~~Gf~~~~~~~  239 (298)
                      ...+-..+...++..+.|...+...+
T Consensus       311 v~el~~~~~sVSWT~~~g~yyi~tvd  336 (438)
T 3uwp_A          311 VVELSPLKGSVSWTGKPVSYYLHTID  336 (438)
T ss_dssp             EEECCCCTTCCCTTSSCCCCEEEEEC
T ss_pred             eeeccCCCCceeeccCCccEEEEEec
Confidence            11222334445566667766555543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.75  E-value=1.1e-17  Score=133.34  Aligned_cols=144  Identities=19%  Similarity=0.233  Sum_probs=108.0

Q ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-CCCCCeeEEE
Q psy2408          85 SITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-FDNDSFDGGW  161 (298)
Q Consensus        85 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~V~  161 (298)
                      .+.++.+|||+|||+|..+..+++..  ..+|+|+|+|+.+++.|++++...++..+++++++|+.+++ +.+++||+|+
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~   98 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM   98 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence            34678899999999999999999974  36999999999999999999999888678999999998774 4568999999


Q ss_pred             ecccccc---------cChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCC
Q psy2408         162 FFESIFH---------MNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG  231 (298)
Q Consensus       162 ~~~~l~~---------~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  231 (298)
                      +...+..         ..+. .+++++.++|+|||++++..+.......  .....            ...+...+...+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~--~~~~~------------~~~~~~~l~~~~  164 (197)
T 3eey_A           99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGF--EEKEK------------VLEFLKGVDQKK  164 (197)
T ss_dssp             EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBS--HHHHH------------HHHHHTTSCTTT
T ss_pred             EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcH--HHHHH------------HHHHHHhCCCCc
Confidence            8765511         1133 8999999999999999998765332211  11111            112333345567


Q ss_pred             CcEEEEEeCCC
Q psy2408         232 FELIKIDDITS  242 (298)
Q Consensus       232 f~~~~~~~~~~  242 (298)
                      |.+.....+..
T Consensus       165 ~~v~~~~~~~~  175 (197)
T 3eey_A          165 FIVQRTDFINQ  175 (197)
T ss_dssp             EEEEEEEETTC
T ss_pred             EEEEEEEeccC
Confidence            88877766544

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.75  E-value=1.8e-17  Score=137.76  Aligned_cols=113  Identities=15%  Similarity=0.220  Sum_probs=94.1

Q ss_pred             HHHhCCCC-CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCC
Q psy2408          80 MINKTSIT-KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDS  156 (298)
Q Consensus        80 l~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~  156 (298)
                      +...+.+. ++.+|||+|||+|.++..+++....+|+|+|+++.+++.|++++...++.+++.++++|+.+++  ++.++
T Consensus        40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~  119 (259)
T 3lpm_A           40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKER  119 (259)
T ss_dssp             HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTC
T ss_pred             HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCC
Confidence            44455667 7899999999999999999986555999999999999999999999998888999999998874  45789


Q ss_pred             eeEEEeccccccc--------------------ChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         157 FDGGWFFESIFHM--------------------NHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       157 fD~V~~~~~l~~~--------------------~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ||+|+++-.+...                    .+. .+++.+.++|+|||++++..
T Consensus       120 fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  176 (259)
T 3lpm_A          120 ADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH  176 (259)
T ss_dssp             EEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence            9999997554332                    122 79999999999999999953

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.75  E-value=6.7e-18  Score=133.69  Aligned_cols=109  Identities=13%  Similarity=0.064  Sum_probs=92.9

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCCeeEEEecc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDSFDGGWFFE  164 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~  164 (298)
                      .++.+|||+|||+|.++..++.....+|+++|+|+.+++.+++++...++ ++++++++|+.+++  +++++||+|++..
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~  121 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADP  121 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECC
Confidence            46789999999999999988875445899999999999999999998887 57999999998763  3468999999988


Q ss_pred             ccccc-ChH-HHHHHHhh--cccCCcEEEEEeCCCC
Q psy2408         165 SIFHM-NHS-AALNEARR--VLKSGSILTLTDLPLL  196 (298)
Q Consensus       165 ~l~~~-~~~-~~l~~~~r--~LkpgG~l~i~~~~~~  196 (298)
                      .+++. ++. .++.++.+  +|+|||.+++......
T Consensus       122 p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          122 PYNVDSADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             CTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             CCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            87665 444 99999999  9999999999776543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.75  E-value=1.3e-17  Score=137.58  Aligned_cols=113  Identities=12%  Similarity=-0.051  Sum_probs=89.9

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC--CCCC
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN--LPFD  153 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~  153 (298)
                      ..+.+++.+.+.++.+|||+|||+|.++..+++ .+++|+++|+|+.|++.|++++....    +.....++..  ....
T Consensus        33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~-~g~~V~gvD~S~~ml~~Ar~~~~~~~----v~~~~~~~~~~~~~~~  107 (261)
T 3iv6_A           33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALE-RGASVTVFDFSQRMCDDLAEALADRC----VTIDLLDITAEIPKEL  107 (261)
T ss_dssp             HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHTSSSC----CEEEECCTTSCCCGGG
T ss_pred             HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHhcc----ceeeeeeccccccccc
Confidence            356678888888999999999999999999998 57899999999999999999875431    2222222221  1112


Q ss_pred             CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCC
Q psy2408         154 NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +++||+|++..+++|+...   .+++++.++| |||+++++...
T Consensus       108 ~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          108 AGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence            4789999999999998755   8999999999 99999998654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.74  E-value=3.6e-17  Score=129.62  Aligned_cols=118  Identities=19%  Similarity=0.285  Sum_probs=102.1

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEECCCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD-KVNFLHGDALNLPFD  153 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~  153 (298)
                      ...+.+++.+...++.+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++...+++. +++++++|+.+. .+
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~  116 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-VK  116 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-CT
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc-cc
Confidence            45667778888788999999999999999999986 8899999999999999999998887753 499999999874 45


Q ss_pred             CCCeeEEEeccccccc-ChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         154 NDSFDGGWFFESIFHM-NHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~-~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +++||+|++..++++. .+. .+++++.++|+|||.+++....
T Consensus       117 ~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  159 (194)
T 1dus_A          117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            6799999998887763 334 9999999999999999998766

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.74  E-value=3e-17  Score=134.01  Aligned_cols=144  Identities=15%  Similarity=0.193  Sum_probs=107.1

Q ss_pred             HHHH---HHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC---
Q psy2408          77 SRIM---INKTSITKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN---  149 (298)
Q Consensus        77 ~~~l---~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~---  149 (298)
                      ...+   ++.+.+.++.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.+++++...   .++.++.+|+..   
T Consensus        60 ~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~  136 (230)
T 1fbn_A           60 AAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQE  136 (230)
T ss_dssp             HHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGG
T ss_pred             HHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCccc
Confidence            3556   5666677889999999999999999998754 79999999999999999886544   579999999988   


Q ss_pred             -CCCCCCCeeEEEecccccccChH----HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHH
Q psy2408         150 -LPFDNDSFDGGWFFESIFHMNHS----AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYP  224 (298)
Q Consensus       150 -~~~~~~~fD~V~~~~~l~~~~~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (298)
                       .+++ ++||+|+     ++++++    .+++++.++|+|||++++.......... .. ...+          ..+++.
T Consensus       137 ~~~~~-~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~-~~~~----------~~~~l~  198 (230)
T 1fbn_A          137 YANIV-EKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVT-KD-PKEI----------FKEQKE  198 (230)
T ss_dssp             GTTTS-CCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSS-SC-HHHH----------HHHHHH
T ss_pred             ccccC-ccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCC-CC-HHHh----------hHHHHH
Confidence             6665 7899998     233333    6799999999999999996211111111 00 0111          125676


Q ss_pred             HHHHhCCCcEEEEEeCCC
Q psy2408         225 DLLNKSGFELIKIDDITS  242 (298)
Q Consensus       225 ~~l~~~Gf~~~~~~~~~~  242 (298)
                       +|+++||.+++..++..
T Consensus       199 -~l~~~Gf~~~~~~~~~~  215 (230)
T 1fbn_A          199 -ILEAGGFKIVDEVDIEP  215 (230)
T ss_dssp             -HHHHHTEEEEEEEECTT
T ss_pred             -HHHHCCCEEEEEEccCC
Confidence             88999999988877644

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.74  E-value=2e-18  Score=139.54  Aligned_cols=159  Identities=20%  Similarity=0.297  Sum_probs=115.0

Q ss_pred             CchhhHHhhhcCCcccccccccCCcee-EeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHH
Q psy2408          30 KGKKTVATLYDSPEGQIGSVLFGGHMH-WGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAK  108 (298)
Q Consensus        30 ~~~~~~~~~yd~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~  108 (298)
                      .....+.++|+.. ++.|+.+...... ...|..        .....+...+..   ..++.+|||+|||+|.++..+  
T Consensus        20 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~---~~~~~~vLDiG~G~G~~~~~l--   85 (215)
T 2zfu_A           20 GPSSAAQRLFQED-PEAFLLYHRGFQSQVKKWPL--------QPVDRIARDLRQ---RPASLVVADFGCGDCRLASSI--   85 (215)
T ss_dssp             SCHHHHHHHHHHC-HHHHHHHHHHHHHHHTTSSS--------CHHHHHHHHHHT---SCTTSCEEEETCTTCHHHHHC--
T ss_pred             hHHHHHHHHHHHh-HHHHHHHHHHHHhhhcccch--------hHHHHHHHHHhc---cCCCCeEEEECCcCCHHHHHh--
Confidence            3445667788877 7777754321100 011221        111223333321   256789999999999998766  


Q ss_pred             hcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcE
Q psy2408         109 AKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSI  187 (298)
Q Consensus       109 ~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~  187 (298)
                        +.+++|+|+|+.                ++.++++|+.++++++++||+|++..++++ .++ .+++++.++|+|||+
T Consensus        86 --~~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~~~~l~~~~~~L~~gG~  146 (215)
T 2zfu_A           86 --RNPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGL  146 (215)
T ss_dssp             --CSCEEEEESSCS----------------STTEEESCTTSCSCCTTCEEEEEEESCCCS-SCHHHHHHHHHHHEEEEEE
T ss_pred             --hccEEEEeCCCC----------------CceEEEeccccCCCCCCCEeEEEEehhccc-cCHHHHHHHHHHhCCCCeE
Confidence              368999999986                367899999998888889999999999964 777 999999999999999


Q ss_pred             EEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCC
Q psy2408         188 LTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       188 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                      +++.++..                    .+.+.+++..+++++||.++......
T Consensus       147 l~i~~~~~--------------------~~~~~~~~~~~l~~~Gf~~~~~~~~~  180 (215)
T 2zfu_A          147 LKVAEVSS--------------------RFEDVRTFLRAVTKLGFKIVSKDLTN  180 (215)
T ss_dssp             EEEEECGG--------------------GCSCHHHHHHHHHHTTEEEEEEECCS
T ss_pred             EEEEEcCC--------------------CCCCHHHHHHHHHHCCCEEEEEecCC
Confidence            99987542                    12267899999999999988865433

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.74  E-value=3.7e-17  Score=128.37  Aligned_cols=134  Identities=14%  Similarity=0.238  Sum_probs=111.8

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+...+++.+.+.++.+|||+|||+|..+..+++ .+.+++++|+|+.+++.+++++...++ .+++++++|+.+ +++
T Consensus        21 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~-~~~   97 (183)
T 2yxd_A           21 EEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAED-VLD   97 (183)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHH-HGG
T ss_pred             HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccc-ccc
Confidence            45566777777778889999999999999999999 778999999999999999999998887 469999999987 566


Q ss_pred             CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCC
Q psy2408         154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGF  232 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  232 (298)
                      +++||+|++..+    .+. .+++++.++  |||.+++.....       .               ...++.+.++++||
T Consensus        98 ~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~-------~---------------~~~~~~~~l~~~g~  149 (183)
T 2yxd_A           98 KLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVL-------E---------------NAAKIINEFESRGY  149 (183)
T ss_dssp             GCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCH-------H---------------HHHHHHHHHHHTTC
T ss_pred             CCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEeccc-------c---------------cHHHHHHHHHHcCC
Confidence            679999999887    555 899999998  999999987541       1               12467788999998


Q ss_pred             cEEEEE
Q psy2408         233 ELIKID  238 (298)
Q Consensus       233 ~~~~~~  238 (298)
                      .+....
T Consensus       150 ~~~~~~  155 (183)
T 2yxd_A          150 NVDAVN  155 (183)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            766543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.74  E-value=1e-17  Score=137.75  Aligned_cols=130  Identities=14%  Similarity=0.107  Sum_probs=104.6

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC---CCCeeEEE
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD---NDSFDGGW  161 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~V~  161 (298)
                      +.++.+|||+|||+|..+..++.. .+.+|+++|+|+.+++.+++++...+++ +++++++|+.+++++   +++||+|+
T Consensus        68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~V~  146 (240)
T 1xdz_A           68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVT  146 (240)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccccCCccEEE
Confidence            356789999999999999999874 4679999999999999999999988875 599999999877643   57899999


Q ss_pred             ecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeC
Q psy2408         162 FFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       162 ~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  240 (298)
                      +..    +.+. .+++.+.++|+|||++++.....    . ..               ...++...++++||.+.....+
T Consensus       147 ~~~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~----~-~~---------------~~~~~~~~l~~~g~~~~~~~~~  202 (240)
T 1xdz_A          147 ARA----VARLSVLSELCLPLVKKNGLFVALKAAS----A-EE---------------ELNAGKKAITTLGGELENIHSF  202 (240)
T ss_dssp             EEC----CSCHHHHHHHHGGGEEEEEEEEEEECC-----C-HH---------------HHHHHHHHHHHTTEEEEEEEEE
T ss_pred             Eec----cCCHHHHHHHHHHhcCCCCEEEEEeCCC----c-hH---------------HHHHHHHHHHHcCCeEeEEEEE
Confidence            866    3566 99999999999999998863221    1 01               0235667889999998876653

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.74  E-value=2.8e-17  Score=142.73  Aligned_cols=145  Identities=12%  Similarity=0.198  Sum_probs=112.6

Q ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec
Q psy2408          85 SITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF  163 (298)
Q Consensus        85 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~  163 (298)
                      .+.++.+|||||||+|..+..+++.. +.+++++|+ +.+++.+++.       .+++++.+|+.+ +++  .||+|++.
T Consensus       185 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p--~~D~v~~~  253 (352)
T 1fp2_A          185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFT-SIP--NADAVLLK  253 (352)
T ss_dssp             HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTT-CCC--CCSEEEEE
T ss_pred             ccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-------CCcEEEeccccC-CCC--CccEEEee
Confidence            34567899999999999999999874 679999999 9998877641       359999999976 555  39999999


Q ss_pred             ccccccChH---HHHHHHhhcccC---CcEEEEEeCCCCCCCCChh--HHHHHHHh---hcccCCCCcchHHHHHHhCCC
Q psy2408         164 ESIFHMNHS---AALNEARRVLKS---GSILTLTDLPLLSVSKNDN--KFKEYVKK---NIHSNFILVEHYPDLLNKSGF  232 (298)
Q Consensus       164 ~~l~~~~~~---~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~l~~~Gf  232 (298)
                      .+++|++++   .+|++++++|+|   ||++++.++........+.  ........   ......++.++|.++++++||
T Consensus       254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf  333 (352)
T 1fp2_A          254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGF  333 (352)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTC
T ss_pred             hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCC
Confidence            999999987   999999999999   9999999887554332110  11111111   012345678999999999999


Q ss_pred             cEEEEEeC
Q psy2408         233 ELIKIDDI  240 (298)
Q Consensus       233 ~~~~~~~~  240 (298)
                      ++++....
T Consensus       334 ~~~~~~~~  341 (352)
T 1fp2_A          334 QHYKISPL  341 (352)
T ss_dssp             CEEEEEEE
T ss_pred             CeeEEEec
Confidence            99887663

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.74  E-value=2.6e-17  Score=136.47  Aligned_cols=140  Identities=18%  Similarity=0.197  Sum_probs=116.8

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ....++..+.+.++.+|||+|||+|.++..+++..  +.+++++|+|+.+++.|++++...+++++++++++|+.+. ++
T Consensus        81 ~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~  159 (255)
T 3mb5_A           81 DAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IE  159 (255)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CC
T ss_pred             HHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cC
Confidence            34567788888899999999999999999999863  6799999999999999999999988877799999999874 56


Q ss_pred             CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCC-
Q psy2408         154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG-  231 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-  231 (298)
                      +++||+|++     +.+++ .+++++.++|+|||++++..+..       .               ...++.+.++++| 
T Consensus       160 ~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~-------~---------------~~~~~~~~l~~~g~  212 (255)
T 3mb5_A          160 EENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCS-------N---------------QVMRLHEKLREFKD  212 (255)
T ss_dssp             CCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESSH-------H---------------HHHHHHHHHHHTGG
T ss_pred             CCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECCH-------H---------------HHHHHHHHHHHcCC
Confidence            788999987     45677 89999999999999999976541       1               1245677889999 


Q ss_pred             -CcEEEEEeCCCC
Q psy2408         232 -FELIKIDDITSH  243 (298)
Q Consensus       232 -f~~~~~~~~~~~  243 (298)
                       |..++..+....
T Consensus       213 ~f~~~~~~e~~~r  225 (255)
T 3mb5_A          213 YFMKPRTINVLVF  225 (255)
T ss_dssp             GBSCCEEECCCCC
T ss_pred             CccccEEEEEeee
Confidence             988877665444

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.73  E-value=1e-16  Score=129.41  Aligned_cols=129  Identities=18%  Similarity=0.199  Sum_probs=104.0

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCCeeEEEec
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDSFDGGWFF  163 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~  163 (298)
                      .++.+|||+|||+|.++..+++.. +.+++|+|+|+.+++.|++++...++ .++.++++|+.+++  +++++||+|+++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~  118 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLN  118 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence            457799999999999999999874 67999999999999999999998887 57999999998876  667899999988


Q ss_pred             ccccccCh---------HHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcE
Q psy2408         164 ESIFHMNH---------SAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFEL  234 (298)
Q Consensus       164 ~~l~~~~~---------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  234 (298)
                      ....+...         ..+++++.++|+|||.+++....       .. .              .+.+.+.++++||.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------~~-~--------------~~~~~~~~~~~g~~~  176 (214)
T 1yzh_A          119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN-------RG-L--------------FEYSLVSFSQYGMKL  176 (214)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC-------HH-H--------------HHHHHHHHHHHTCEE
T ss_pred             CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC-------HH-H--------------HHHHHHHHHHCCCee
Confidence            65433221         27999999999999999986432       01 0              135566788889987


Q ss_pred             EEEE
Q psy2408         235 IKID  238 (298)
Q Consensus       235 ~~~~  238 (298)
                      +...
T Consensus       177 ~~~~  180 (214)
T 1yzh_A          177 NGVW  180 (214)
T ss_dssp             EEEE
T ss_pred             eecc
Confidence            7655

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.73  E-value=3.2e-17  Score=129.69  Aligned_cols=136  Identities=21%  Similarity=0.210  Sum_probs=110.7

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+...++..+.+.++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.+++++...++..++.+.++|+.+ +++
T Consensus        19 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~   96 (192)
T 1l3i_A           19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALC   96 (192)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcc
Confidence            4556667777778889999999999999999999854 89999999999999999999988876689999999876 223


Q ss_pred             C-CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCC
Q psy2408         154 N-DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG  231 (298)
Q Consensus       154 ~-~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  231 (298)
                      . ++||+|++..+++   +. .+++++.++|+|||.+++.....       .               +..++...+++.|
T Consensus        97 ~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~~-------~---------------~~~~~~~~l~~~g  151 (192)
T 1l3i_A           97 KIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAILL-------E---------------TKFEAMECLRDLG  151 (192)
T ss_dssp             TSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECBH-------H---------------HHHHHHHHHHHTT
T ss_pred             cCCCCCEEEECCchH---HHHHHHHHHHHhcCCCcEEEEEecCc-------c---------------hHHHHHHHHHHCC
Confidence            2 5899999987764   45 89999999999999999976541       1               1246778899999


Q ss_pred             CcEEE
Q psy2408         232 FELIK  236 (298)
Q Consensus       232 f~~~~  236 (298)
                      |.+..
T Consensus       152 ~~~~~  156 (192)
T 1l3i_A          152 FDVNI  156 (192)
T ss_dssp             CCCEE
T ss_pred             CceEE
Confidence            95443

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.73  E-value=1e-16  Score=134.49  Aligned_cols=141  Identities=16%  Similarity=0.207  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      ..+.++..+++.+. .++.+|||+|||+|..+..++... +.+|+++|+|+.+++.+++++...+++ +++++++|+.+.
T Consensus        94 ~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~  171 (276)
T 2b3t_A           94 DTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSA  171 (276)
T ss_dssp             THHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGG
T ss_pred             hHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhh
Confidence            34667777888776 567899999999999999999764 679999999999999999999988875 699999999874


Q ss_pred             CCCCCCeeEEEec-------------ccccccC------------hH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhH
Q psy2408         151 PFDNDSFDGGWFF-------------ESIFHMN------------HS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNK  204 (298)
Q Consensus       151 ~~~~~~fD~V~~~-------------~~l~~~~------------~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~  204 (298)
                       ++.++||+|+++             .+++|.+            .. .+++++.++|+|||++++...           
T Consensus       172 -~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~-----------  239 (276)
T 2b3t_A          172 -LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG-----------  239 (276)
T ss_dssp             -GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-----------
T ss_pred             -cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------
Confidence             346789999997             3444433            23 889999999999999998621           


Q ss_pred             HHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEE
Q psy2408         205 FKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                                  +.+.+++.++++++||..+...
T Consensus       240 ------------~~~~~~~~~~l~~~Gf~~v~~~  261 (276)
T 2b3t_A          240 ------------WQQGEAVRQAFILAGYHDVETC  261 (276)
T ss_dssp             ------------SSCHHHHHHHHHHTTCTTCCEE
T ss_pred             ------------chHHHHHHHHHHHCCCcEEEEE
Confidence                        1234578889999999866543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.73  E-value=6.1e-17  Score=130.27  Aligned_cols=114  Identities=23%  Similarity=0.135  Sum_probs=101.0

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ......+++.+.+.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++++...+++ +++++.+|+.+...+
T Consensus        63 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~  140 (210)
T 3lbf_A           63 PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQA  140 (210)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCcc
Confidence            456677788888889999999999999999999995 789999999999999999999988875 699999999886555


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .++||+|++..+++++++     ++.++|+|||++++....
T Consensus       141 ~~~~D~i~~~~~~~~~~~-----~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          141 RAPFDAIIVTAAPPEIPT-----ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             GCCEEEEEESSBCSSCCT-----HHHHTEEEEEEEEEEECS
T ss_pred             CCCccEEEEccchhhhhH-----HHHHhcccCcEEEEEEcC
Confidence            689999999999999887     588999999999997665

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.73  E-value=5.6e-17  Score=136.08  Aligned_cols=137  Identities=13%  Similarity=0.140  Sum_probs=108.8

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS  156 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  156 (298)
                      ...+.+.+  .++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++.++++++++|+.+++. +++
T Consensus       116 ~~~l~~~~--~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~  192 (278)
T 2frn_A          116 RVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENI  192 (278)
T ss_dssp             HHHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSC
T ss_pred             HHHHHHhC--CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCC
Confidence            33444443  578899999999999999999853337999999999999999999999987779999999999865 689


Q ss_pred             eeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEE
Q psy2408         157 FDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI  235 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  235 (298)
                      ||+|++...    ... .++.++.++|+|||++++.+........                ....+.+...++++||.+.
T Consensus       193 fD~Vi~~~p----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~----------------~~~~~~i~~~~~~~G~~~~  252 (278)
T 2frn_A          193 ADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMP----------------REPFETFKRITKEYGYDVE  252 (278)
T ss_dssp             EEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTT----------------TTTHHHHHHHHHHTTCEEE
T ss_pred             ccEEEECCc----hhHHHHHHHHHHHCCCCeEEEEEEeecccccc----------------ccHHHHHHHHHHHcCCeeE
Confidence            999988432    233 8999999999999999998766322111                1124567788999999887


Q ss_pred             E
Q psy2408         236 K  236 (298)
Q Consensus       236 ~  236 (298)
                      .
T Consensus       253 ~  253 (278)
T 2frn_A          253 K  253 (278)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.73  E-value=5e-18  Score=139.71  Aligned_cols=164  Identities=13%  Similarity=0.147  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHhCCC-CCCCeEEEeCCCC--CHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q psy2408          70 AQGSDKLSRIMINKTSI-TKGQRFIDIGCGF--GLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH  144 (298)
Q Consensus        70 ~~~~~~~~~~l~~~~~~-~~~~~vLDiGcG~--G~~~~~l~~~--~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~  144 (298)
                      ....+......++.+.. ....+|||||||+  +..+..+++.  .+++|+++|.|+.|++.|+.++...+ ..++++++
T Consensus        59 a~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~  137 (277)
T 3giw_A           59 MRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVE  137 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEE
T ss_pred             HHHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEE
Confidence            34445555555555542 2346999999997  4444555543  47899999999999999999986542 24799999


Q ss_pred             CCCCCCC----CC--CCCee-----EEEecccccccCh---H-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHH
Q psy2408         145 GDALNLP----FD--NDSFD-----GGWFFESIFHMNH---S-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYV  209 (298)
Q Consensus       145 ~d~~~~~----~~--~~~fD-----~V~~~~~l~~~~~---~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~  209 (298)
                      +|+.+++    .+  .+.||     .|+++.+|||+++   + .+++++.+.|+|||+|++++................+
T Consensus       138 aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~  217 (277)
T 3giw_A          138 ADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREY  217 (277)
T ss_dssp             CCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHH
Confidence            9998852    11  24455     6889999999998   5 8999999999999999999876442111001111222


Q ss_pred             Hh-hcccCCCCcchHHHHHHhCCCcEEE
Q psy2408         210 KK-NIHSNFILVEHYPDLLNKSGFELIK  236 (298)
Q Consensus       210 ~~-~~~~~~~~~~~~~~~l~~~Gf~~~~  236 (298)
                      .. .....+.+.+++..+|.  ||++++
T Consensus       218 ~~~g~p~~~rs~~ei~~~f~--Glelve  243 (277)
T 3giw_A          218 AARNMPMRLRTHAEAEEFFE--GLELVE  243 (277)
T ss_dssp             HHTTCCCCCCCHHHHHHTTT--TSEECT
T ss_pred             HhcCCCCccCCHHHHHHHhC--CCcccC
Confidence            21 22235678899999995  998665

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.72  E-value=6e-17  Score=134.47  Aligned_cols=136  Identities=18%  Similarity=0.244  Sum_probs=113.6

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEECCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAE-GLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~  153 (298)
                      ...++..+.+.++.+|||+|||+|.++..+++..  +.+|+++|+|+.+++.+++++... + ..++.+.++|+.+.+++
T Consensus        85 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~  163 (258)
T 2pwy_A           85 ASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELE  163 (258)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCC
T ss_pred             HHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCC
Confidence            3567777888899999999999999999999863  579999999999999999998877 6 45799999999987777


Q ss_pred             CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCC
Q psy2408         154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGF  232 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  232 (298)
                      +++||+|++     +.+++ .+++++.++|+|||++++..+..       .               ...++...++++||
T Consensus       164 ~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~-------~---------------~~~~~~~~l~~~gf  216 (258)
T 2pwy_A          164 EAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPNI-------T---------------QVLELVRAAEAHPF  216 (258)
T ss_dssp             TTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESCH-------H---------------HHHHHHHHHTTTTE
T ss_pred             CCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCH-------H---------------HHHHHHHHHHHCCC
Confidence            789999987     45677 99999999999999999987541       1               12356677888999


Q ss_pred             cEEEEEeC
Q psy2408         233 ELIKIDDI  240 (298)
Q Consensus       233 ~~~~~~~~  240 (298)
                      ..++..+.
T Consensus       217 ~~~~~~~~  224 (258)
T 2pwy_A          217 RLERVLEV  224 (258)
T ss_dssp             EEEEEEEE
T ss_pred             ceEEEEEe
Confidence            98776654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.72  E-value=3.9e-17  Score=131.69  Aligned_cols=114  Identities=17%  Similarity=0.158  Sum_probs=95.8

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND  155 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  155 (298)
                      +...+...+  .++.+|||+|||+|.++..+++....+++++|+|+.+++.++++...   ..++.++++|+.+++++++
T Consensus        32 ~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~~~~~~  106 (215)
T 2pxx_A           32 FRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKLDFPSA  106 (215)
T ss_dssp             HHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSCCSCSS
T ss_pred             HHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcCCCCCC
Confidence            344444443  67889999999999999999985323899999999999999998764   2469999999999888888


Q ss_pred             CeeEEEecccccccC---------------hH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         156 SFDGGWFFESIFHMN---------------HS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~---------------~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +||+|++..+++++.               +. .+++++.++|+|||++++.++.
T Consensus       107 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  161 (215)
T 2pxx_A          107 SFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA  161 (215)
T ss_dssp             CEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence            999999998887765               44 9999999999999999998876

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.72  E-value=6.9e-17  Score=139.30  Aligned_cols=114  Identities=19%  Similarity=0.248  Sum_probs=97.7

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      ...+.+.+.+.+.++.+|||+|||+|.++..+++....+|+|+|+|+ +++.|++++...++.+++.++++|+.++++++
T Consensus        51 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  129 (340)
T 2fyt_A           51 SYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV  129 (340)
T ss_dssp             HHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC
T ss_pred             HHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCC
Confidence            34456666666678899999999999999999985334999999996 99999999999888778999999999988887


Q ss_pred             CCeeEEEecc---cccccChH-HHHHHHhhcccCCcEEE
Q psy2408         155 DSFDGGWFFE---SIFHMNHS-AALNEARRVLKSGSILT  189 (298)
Q Consensus       155 ~~fD~V~~~~---~l~~~~~~-~~l~~~~r~LkpgG~l~  189 (298)
                      ++||+|++..   .+.+..+. .++.++.++|+|||+++
T Consensus       130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            8999999876   45555666 89999999999999987

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.72  E-value=2.9e-17  Score=137.80  Aligned_cols=136  Identities=14%  Similarity=0.184  Sum_probs=108.4

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEECCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAE-GLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~l~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~  153 (298)
                      ...++..+.+.++.+|||+|||+|..+..+++.  .+.+|+++|+|+.+++.+++++... +. ++++++++|+.+ +++
T Consensus        99 ~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~-~~~  176 (275)
T 1yb2_A           99 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIAD-FIS  176 (275)
T ss_dssp             -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTT-CCC
T ss_pred             HHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhc-cCc
Confidence            346677788889999999999999999999986  2679999999999999999999877 64 479999999988 566


Q ss_pred             CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCC
Q psy2408         154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGF  232 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  232 (298)
                      +++||+|++     +++++ .+++++.++|+|||++++.+...       .               ..+.+...++++||
T Consensus       177 ~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-------~---------------~~~~~~~~l~~~Gf  229 (275)
T 1yb2_A          177 DQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNF-------D---------------QSEKTVLSLSASGM  229 (275)
T ss_dssp             SCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSH-------H---------------HHHHHHHHSGGGTE
T ss_pred             CCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCH-------H---------------HHHHHHHHHHHCCC
Confidence            788999987     56777 99999999999999999987541       0               12356677888999


Q ss_pred             cEEEEEeCC
Q psy2408         233 ELIKIDDIT  241 (298)
Q Consensus       233 ~~~~~~~~~  241 (298)
                      ..++.....
T Consensus       230 ~~~~~~~~~  238 (275)
T 1yb2_A          230 HHLETVELM  238 (275)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEEe
Confidence            988776543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.72  E-value=5e-16  Score=125.81  Aligned_cols=149  Identities=17%  Similarity=0.120  Sum_probs=103.2

Q ss_pred             HHHHHHHHHhC---CCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC
Q psy2408          74 DKLSRIMINKT---SITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL  148 (298)
Q Consensus        74 ~~~~~~l~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~  148 (298)
                      .++...++..+   .+.++.+|||+|||+|..+..+++..  .++|+++|+|+.|++...+.+...   .|+.++++|+.
T Consensus        59 skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~  135 (232)
T 3id6_C           59 SKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADAR  135 (232)
T ss_dssp             CHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTT
T ss_pred             HHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccc
Confidence            34455555554   48899999999999999999999863  469999999999986665554443   47999999997


Q ss_pred             CCC---CCCCCeeEEEecccccccChH-H-HHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchH
Q psy2408         149 NLP---FDNDSFDGGWFFESIFHMNHS-A-ALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY  223 (298)
Q Consensus       149 ~~~---~~~~~fD~V~~~~~l~~~~~~-~-~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (298)
                      ...   ...++||+|++..+.   ++. . ++..+.++|||||+|++..........             ...--...+.
T Consensus       136 ~~~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t-------------~~~~e~~~~~  199 (232)
T 3id6_C          136 FPQSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVT-------------KDPKEIYKTE  199 (232)
T ss_dssp             CGGGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC--------------------CCSSSSTTHH
T ss_pred             cchhhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccC-------------CCHHHHHHHH
Confidence            642   124689999987543   555 4 445666699999999998533110000             0000112456


Q ss_pred             HHHHHhCCCcEEEEEeCC
Q psy2408         224 PDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       224 ~~~l~~~Gf~~~~~~~~~  241 (298)
                      ...|+++||++++...+.
T Consensus       200 ~~~L~~~gf~~~~~~~l~  217 (232)
T 3id6_C          200 VEKLENSNFETIQIINLD  217 (232)
T ss_dssp             HHHHHHTTEEEEEEEECT
T ss_pred             HHHHHHCCCEEEEEeccC
Confidence            678889999999887763

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.71  E-value=3.2e-16  Score=131.71  Aligned_cols=150  Identities=13%  Similarity=0.055  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeC-CHHHHHHHHHHH-----HhcCCC----Cce
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITI-SKFQQESAMKTA-----KAEGLL----DKV  140 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~-s~~~l~~a~~~~-----~~~~~~----~~i  140 (298)
                      ....+.+.+.......++.+|||+|||+|.++..+++. +. +|+++|+ |+.+++.+++++     ...++.    +++
T Consensus        63 ~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v  141 (281)
T 3bzb_A           63 GARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASP  141 (281)
T ss_dssp             HHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCC
T ss_pred             HHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCe
Confidence            45667777777665567889999999999999988884 55 9999999 899999999998     555543    468


Q ss_pred             EEEECCCCCC--CC----CCCCeeEEEecccccccChH-HHHHHHhhccc---C--CcEEEEEeCCCCCCCCChhHHHHH
Q psy2408         141 NFLHGDALNL--PF----DNDSFDGGWFFESIFHMNHS-AALNEARRVLK---S--GSILTLTDLPLLSVSKNDNKFKEY  208 (298)
Q Consensus       141 ~~~~~d~~~~--~~----~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~Lk---p--gG~l~i~~~~~~~~~~~~~~~~~~  208 (298)
                      .+...|..+.  .+    +.++||+|++..++++.++. .+++.+.++|+   |  ||++++.........         
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~---------  212 (281)
T 3bzb_A          142 KVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHL---------  212 (281)
T ss_dssp             EEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------------
T ss_pred             EEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeeccc---------
Confidence            8887765542  11    35789999999999998888 99999999999   9  998877533311100         


Q ss_pred             HHhhcccCCCCcchHHHHHHhCC-CcEEEEEe
Q psy2408         209 VKKNIHSNFILVEHYPDLLNKSG-FELIKIDD  239 (298)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~  239 (298)
                              ......+...+++.| |.+..+..
T Consensus       213 --------~~~~~~~~~~l~~~G~f~v~~~~~  236 (281)
T 3bzb_A          213 --------AERDLAFFRLVNADGALIAEPWLS  236 (281)
T ss_dssp             -----------CTHHHHHHHHSTTEEEEEEEC
T ss_pred             --------chhHHHHHHHHHhcCCEEEEEecc
Confidence                    012356777889999 99887754

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.71  E-value=3e-17  Score=132.73  Aligned_cols=106  Identities=18%  Similarity=0.224  Sum_probs=88.9

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-C--CCCCCeeEEEec
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-P--FDNDSFDGGWFF  163 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~fD~V~~~  163 (298)
                      ++.+|||||||+|..+..+++.. +..|+|+|+|+.+++.|++++...++. ++.++++|+.++ +  +++++||.|++.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            56799999999999999999864 678999999999999999999988875 699999998874 3  678999999987


Q ss_pred             ccccccChH---------HHHHHHhhcccCCcEEEEEeCC
Q psy2408         164 ESIFHMNHS---------AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       164 ~~l~~~~~~---------~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ....+....         .+++++.++|||||.+++.+..
T Consensus       113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~  152 (218)
T 3dxy_A          113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW  152 (218)
T ss_dssp             SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence            544333221         4999999999999999997643

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.71  E-value=2e-16  Score=127.56  Aligned_cols=128  Identities=20%  Similarity=0.169  Sum_probs=100.6

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCCeeEEEec
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDSFDGGWFF  163 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~  163 (298)
                      .++.+|||||||+|.++..+++.. +.+++|+|+|+.+++.|++++...++ .++.++++|+.+++  +++++||.|++.
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~v~~~  115 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLN  115 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence            356799999999999999999864 67999999999999999999998887 46999999998864  667899999876


Q ss_pred             ccccccC---------hHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcE
Q psy2408         164 ESIFHMN---------HSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFEL  234 (298)
Q Consensus       164 ~~l~~~~---------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  234 (298)
                      ....+..         ...+++++.++|+|||.+++....        ..+              ...+...++++||..
T Consensus       116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~--------~~~--------------~~~~~~~~~~~g~~~  173 (213)
T 2fca_A          116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN--------RGL--------------FEYSLKSFSEYGLLL  173 (213)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC--------HHH--------------HHHHHHHHHHHTCEE
T ss_pred             CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC--------HHH--------------HHHHHHHHHHCCCcc
Confidence            5443322         137999999999999999987533        110              123456677788876


Q ss_pred             EEE
Q psy2408         235 IKI  237 (298)
Q Consensus       235 ~~~  237 (298)
                      ...
T Consensus       174 ~~~  176 (213)
T 2fca_A          174 TYV  176 (213)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            654

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.71  E-value=3.1e-17  Score=131.14  Aligned_cols=107  Identities=15%  Similarity=0.166  Sum_probs=89.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCCC--CCCCC-eeEEEec
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGDALNLP--FDNDS-FDGGWFF  163 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~~-fD~V~~~  163 (298)
                      ++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++...++. ++++++++|+.++.  .++++ ||+|++.
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            67899999999999999877754458999999999999999999988874 57999999987642  23578 9999998


Q ss_pred             ccccccChH-HHHHHH--hhcccCCcEEEEEeCCC
Q psy2408         164 ESIFHMNHS-AALNEA--RRVLKSGSILTLTDLPL  195 (298)
Q Consensus       164 ~~l~~~~~~-~~l~~~--~r~LkpgG~l~i~~~~~  195 (298)
                      ..+ +..+. .+++.+  .++|+|||.+++.....
T Consensus       133 ~~~-~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          133 PPF-HFNLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             CCS-SSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             CCC-CCccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            774 35556 888888  77899999999976653

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.70  E-value=8e-17  Score=139.43  Aligned_cols=113  Identities=20%  Similarity=0.188  Sum_probs=94.7

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCe
Q psy2408          78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSF  157 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  157 (298)
                      +.+.....+.++.+|||+|||+|.++..+++....+|+|+|+| ++++.|++++...++.++++++++|+.++++++++|
T Consensus        56 ~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  134 (349)
T 3q7e_A           56 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKV  134 (349)
T ss_dssp             HHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCE
T ss_pred             HHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCce
Confidence            3344333445788999999999999999999633499999999 599999999999998888999999999998888999


Q ss_pred             eEEEeccccc---ccChH-HHHHHHhhcccCCcEEEEE
Q psy2408         158 DGGWFFESIF---HMNHS-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       158 D~V~~~~~l~---~~~~~-~~l~~~~r~LkpgG~l~i~  191 (298)
                      |+|++..+.+   +.... .++.++.++|+|||+++..
T Consensus       135 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          135 DIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             EEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             EEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence            9999876544   33566 9999999999999998743

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.70  E-value=2.1e-17  Score=129.34  Aligned_cols=123  Identities=14%  Similarity=0.078  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHhCC-CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          72 GSDKLSRIMINKTS-ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        72 ~~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      ....+.+.+++.+. ..++.+|||+|||+|..+..+++....+|+|+|+|+.+++.+++++...++.+++.++++|+.+.
T Consensus        14 ~~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   93 (177)
T 2esr_A           14 TSDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA   93 (177)
T ss_dssp             ----CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH
T ss_pred             CHHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh
Confidence            33455666666665 56788999999999999999998634699999999999999999999888777899999998773


Q ss_pred             -CCCCCCeeEEEecccccccChH-HHHHHHh--hcccCCcEEEEEeCCC
Q psy2408         151 -PFDNDSFDGGWFFESIFHMNHS-AALNEAR--RVLKSGSILTLTDLPL  195 (298)
Q Consensus       151 -~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~--r~LkpgG~l~i~~~~~  195 (298)
                       +...++||+|++...+.. ... ..++.+.  ++|+|||.+++.....
T Consensus        94 ~~~~~~~fD~i~~~~~~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A           94 IDCLTGRFDLVFLDPPYAK-ETIVATIEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             HHHBCSCEEEEEECCSSHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             HHhhcCCCCEEEECCCCCc-chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence             333467999999766532 233 6677776  9999999999986653

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.70  E-value=3.2e-16  Score=125.93  Aligned_cols=103  Identities=15%  Similarity=0.049  Sum_probs=81.9

Q ss_pred             CCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC----CCCCCCee
Q psy2408          84 TSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL----PFDNDSFD  158 (298)
Q Consensus        84 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD  158 (298)
                      +.+.++.+|||+|||+|..+..+++.. +.+|+|+|+|+.|++.+.+.+...   .++.++.+|+...    +++ ++||
T Consensus        53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~-~~fD  128 (210)
T 1nt2_A           53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIV-EKVD  128 (210)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTC-CCEE
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccc-ccee
Confidence            456788999999999999999999864 369999999999887777666543   3688999998773    444 7899


Q ss_pred             EEEecccccccChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         159 GGWFFESIFHMNHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       159 ~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +|++.. ..+ ... .+++++.++|||||++++..
T Consensus       129 ~V~~~~-~~~-~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          129 LIYQDI-AQK-NQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             EEEECC-CST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEec-cCh-hHHHHHHHHHHHHhCCCCEEEEEE
Confidence            999872 221 223 56999999999999999973

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.70  E-value=9.8e-17  Score=139.63  Aligned_cols=152  Identities=13%  Similarity=0.191  Sum_probs=115.8

Q ss_pred             HHHHhC--CCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC
Q psy2408          79 IMINKT--SITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND  155 (298)
Q Consensus        79 ~l~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  155 (298)
                      .+++.+  .+.++.+|||||||+|..+..+++.. +.+++++|+ +.+++.+++      . .+++++.+|+.+ +++  
T Consensus       182 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~~--  250 (358)
T 1zg3_A          182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK-SIP--  250 (358)
T ss_dssp             HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT-CCC--
T ss_pred             HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC-CCC--
Confidence            345544  34566899999999999999999874 579999999 788876653      2 359999999987 665  


Q ss_pred             CeeEEEecccccccChH---HHHHHHhhcccC---CcEEEEEeCCCCCCCCCh--hHHHHHHH----hhcccCCCCcchH
Q psy2408         156 SFDGGWFFESIFHMNHS---AALNEARRVLKS---GSILTLTDLPLLSVSKND--NKFKEYVK----KNIHSNFILVEHY  223 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~---~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~  223 (298)
                      +||+|++..++++++++   .+|++++++|+|   ||++++.++........+  ........    .......++.++|
T Consensus       251 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~  330 (358)
T 1zg3_A          251 SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEW  330 (358)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHH
T ss_pred             CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHH
Confidence            49999999999999986   999999999999   999999988755433211  01111111    1123456789999


Q ss_pred             HHHHHhCCCcEEEEEeCC
Q psy2408         224 PDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       224 ~~~l~~~Gf~~~~~~~~~  241 (298)
                      .++|+++||++++.....
T Consensus       331 ~~ll~~aGf~~~~~~~~~  348 (358)
T 1zg3_A          331 EKLIYDAGFSSYKITPIS  348 (358)
T ss_dssp             HHHHHHTTCCEEEEEEET
T ss_pred             HHHHHHcCCCeeEEEecC
Confidence            999999999999887643

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.70  E-value=3e-17  Score=126.74  Aligned_cols=116  Identities=8%  Similarity=0.091  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      ..+.+...+...+  .+..+|||+|||+|.++..++.. ++++|+++|+|+.|++.+++++...|+..++.+  .|....
T Consensus        35 ~ld~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~  110 (200)
T 3fzg_A           35 TLNDFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD  110 (200)
T ss_dssp             GHHHHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH
T ss_pred             hHHHHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc
Confidence            3455666666666  45779999999999999999876 467999999999999999999999888666666  555443


Q ss_pred             CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                       .+.++||+|++..+++++++. ..+.++.+.|+|||.++-..
T Consensus       111 -~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          111 -VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             -HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             -CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence             346889999999999999444 67779999999999887765

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.70  E-value=1.2e-16  Score=124.12  Aligned_cols=118  Identities=15%  Similarity=0.119  Sum_probs=96.3

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      .++.+|||+|||+|.++..+++. + +|+|+|+|+.+++.          ..+++++++|+.+ ++++++||+|+++..+
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~-~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~   88 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKR-N-TVVSTDLNIRALES----------HRGGNLVRADLLC-SINQESVDVVVFNPPY   88 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTT-S-EEEEEESCHHHHHT----------CSSSCEEECSTTT-TBCGGGCSEEEECCCC
T ss_pred             CCCCeEEEeccCccHHHHHHHhc-C-cEEEEECCHHHHhc----------ccCCeEEECChhh-hcccCCCCEEEECCCC
Confidence            45679999999999999999985 4 99999999999987          2468999999988 5566899999998887


Q ss_pred             cccCh---------H-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEE
Q psy2408         167 FHMNH---------S-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIK  236 (298)
Q Consensus       167 ~~~~~---------~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  236 (298)
                      ++.++         . .+++++.+.+ |||++++.....                      ...+++.++++++||..+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~----------------------~~~~~l~~~l~~~gf~~~~  145 (170)
T 3q87_B           89 VPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA----------------------NRPKEVLARLEERGYGTRI  145 (170)
T ss_dssp             BTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG----------------------GCHHHHHHHHHHTTCEEEE
T ss_pred             ccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC----------------------CCHHHHHHHHHHCCCcEEE
Confidence            75332         3 8889999999 999999976441                      1345788899999999887


Q ss_pred             EEeC
Q psy2408         237 IDDI  240 (298)
Q Consensus       237 ~~~~  240 (298)
                      ....
T Consensus       146 ~~~~  149 (170)
T 3q87_B          146 LKVR  149 (170)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            6653

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.70  E-value=9.6e-17  Score=131.29  Aligned_cols=143  Identities=10%  Similarity=0.061  Sum_probs=104.4

Q ss_pred             HHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC---CCCCCC
Q psy2408          81 INKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN---LPFDND  155 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~  155 (298)
                      ++.+.+.++.+|||+|||+|.++..+++..  +.+|+|+|+|+.+++.+.+.+...   .++.++++|+.+   +++.++
T Consensus        70 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~  146 (233)
T 2ipx_A           70 VDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIA  146 (233)
T ss_dssp             CSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCC
T ss_pred             HheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCC
Confidence            345667789999999999999999999874  479999999999988888877664   469999999987   344567


Q ss_pred             CeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCc
Q psy2408         156 SFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFE  233 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  233 (298)
                      +||+|++...   .++.  .++.++.++|+|||++++..........  ......         +. .+ .++|+++||+
T Consensus       147 ~~D~V~~~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~--~~~~~~---------~~-~~-~~~l~~~Gf~  210 (233)
T 2ipx_A          147 MVDVIFADVA---QPDQTRIVALNAHTFLRNGGHFVISIKANCIDST--ASAEAV---------FA-SE-VKKMQQENMK  210 (233)
T ss_dssp             CEEEEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSS--SCHHHH---------HH-HH-HHTTGGGTEE
T ss_pred             cEEEEEEcCC---CccHHHHHHHHHHHHcCCCeEEEEEEcccccccC--CCHHHH---------HH-HH-HHHHHHCCCc
Confidence            9999998544   3333  6688999999999999996433110111  000011         11 12 4788999999


Q ss_pred             EEEEEeCCC
Q psy2408         234 LIKIDDITS  242 (298)
Q Consensus       234 ~~~~~~~~~  242 (298)
                      +++...+..
T Consensus       211 ~~~~~~~~~  219 (233)
T 2ipx_A          211 PQEQLTLEP  219 (233)
T ss_dssp             EEEEEECTT
T ss_pred             eEEEEecCC
Confidence            988666543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.70  E-value=4.5e-17  Score=135.01  Aligned_cols=164  Identities=13%  Similarity=0.086  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHhCCC--CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC
Q psy2408          72 GSDKLSRIMINKTSI--TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL  148 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~  148 (298)
                      ....+...++..+..  .++.+|||+|||+|.++..++... +.+|+|+|+|+.+++.|++++...++.++++++++|+.
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  126 (254)
T 2h00_A           47 NYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQK  126 (254)
T ss_dssp             HHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             HHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchh
Confidence            344566666665543  257799999999999999998863 78999999999999999999999888777999999976


Q ss_pred             CC---CCC---CCCeeEEEecccccccC--------------hH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHH
Q psy2408         149 NL---PFD---NDSFDGGWFFESIFHMN--------------HS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFK  206 (298)
Q Consensus       149 ~~---~~~---~~~fD~V~~~~~l~~~~--------------~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~  206 (298)
                      +.   +++   +++||+|+++-.+++..              .+  .++.++.++|+|||.+.+.+...       ....
T Consensus       127 ~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~-------~~~~  199 (254)
T 2h00_A          127 TLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRII-------HDSL  199 (254)
T ss_dssp             CSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHH-------HHHH
T ss_pred             hhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHH-------HHHH
Confidence            52   344   26899999985544332              12  56788999999999887653210       1111


Q ss_pred             HHHHhh--c---ccCCCCcchHHHHHHhCCCcEEEEEeCCC
Q psy2408         207 EYVKKN--I---HSNFILVEHYPDLLNKSGFELIKIDDITS  242 (298)
Q Consensus       207 ~~~~~~--~---~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  242 (298)
                      .+....  .   .......+++.++++++||..++...+..
T Consensus       200 ~~l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~~  240 (254)
T 2h00_A          200 QLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQ  240 (254)
T ss_dssp             HHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEEEE
T ss_pred             hcccceEEEEECCCChhHHHHHHHHHHHcCCCceEEEEEec
Confidence            111110  0   11122336788999999999887766543

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.70  E-value=2.3e-16  Score=132.43  Aligned_cols=138  Identities=20%  Similarity=0.211  Sum_probs=113.5

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      ...++..+.+.++.+|||+|||+|.++..+++..  +.+|+++|+|+.+++.|++++...++.+++.++.+|+.+. +++
T Consensus       101 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~  179 (277)
T 1o54_A          101 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDE  179 (277)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSC
T ss_pred             HHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccC
Confidence            3466777788899999999999999999999863  5799999999999999999999888766899999999876 566


Q ss_pred             CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCc
Q psy2408         155 DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFE  233 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  233 (298)
                      ++||+|++     +.+++ .+++++.++|+|||++++.+...       .               ...++...|++.||.
T Consensus       180 ~~~D~V~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~-------~---------------~~~~~~~~l~~~gf~  232 (277)
T 1o54_A          180 KDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTT-------N---------------QVQETLKKLQELPFI  232 (277)
T ss_dssp             CSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSH-------H---------------HHHHHHHHHHHSSEE
T ss_pred             CccCEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCCH-------H---------------HHHHHHHHHHHCCCc
Confidence            78999987     45677 99999999999999999986541       1               123566778889998


Q ss_pred             EEEEEeCCC
Q psy2408         234 LIKIDDITS  242 (298)
Q Consensus       234 ~~~~~~~~~  242 (298)
                      .++....-.
T Consensus       233 ~~~~~~~~~  241 (277)
T 1o54_A          233 RIEVWESLF  241 (277)
T ss_dssp             EEEEECCCC
T ss_pred             eeEEEEEee
Confidence            877665433

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.69  E-value=1.4e-16  Score=137.91  Aligned_cols=117  Identities=17%  Similarity=0.226  Sum_probs=99.7

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ....+.+++.+...++.+|||||||+|.++..+++....+|+|+|+|+ +++.|++++...++.++++++.+|+.+++++
T Consensus        36 ~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~  114 (348)
T 2y1w_A           36 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP  114 (348)
T ss_dssp             HHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS
T ss_pred             HHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC
Confidence            344566777777778899999999999999999985345999999996 8999999999888878899999999998765


Q ss_pred             CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEe
Q psy2408         154 NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~  192 (298)
                       ++||+|++..+++|+...   ..+.++.++|+|||.+++..
T Consensus       115 -~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          115 -EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             -SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             -CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence             689999999888877543   88889999999999998653

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.69  E-value=2e-16  Score=136.47  Aligned_cols=157  Identities=20%  Similarity=0.176  Sum_probs=93.3

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcC----------CCCceEEEE
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEG----------LLDKVNFLH  144 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~----------~~~~i~~~~  144 (298)
                      ...++..+.+.++.+|||+|||+|.++..+++..+  .+|+++|+++.+++.|++++...+          ...++++++
T Consensus        94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            45566667788999999999999999999998643  799999999999999999987532          235799999


Q ss_pred             CCCCCC--CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh-h-------c
Q psy2408         145 GDALNL--PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK-N-------I  213 (298)
Q Consensus       145 ~d~~~~--~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~-------~  213 (298)
                      +|+.+.  ++++++||+|++.     ++++ .++.++.++|+|||++++........   ......+... .       .
T Consensus       174 ~d~~~~~~~~~~~~fD~V~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~  245 (336)
T 2b25_A          174 KDISGATEDIKSLTFDAVALD-----MLNPHVTLPVFYPHLKHGGVCAVYVVNITQV---IELLDGIRTCELALSCEKIS  245 (336)
T ss_dssp             SCTTCCC-------EEEEEEC-----SSSTTTTHHHHGGGEEEEEEEEEEESSHHHH---HHHHHHHHHHTCCEEEEEEE
T ss_pred             CChHHcccccCCCCeeEEEEC-----CCCHHHHHHHHHHhcCCCcEEEEEeCCHHHH---HHHHHHHHhcCCCcccceEE
Confidence            999886  4566789999873     4556 78999999999999999876542110   0111111110 0       0


Q ss_pred             --ccCCCCc-------chHHHHHHhCCCcEEEEEeCC
Q psy2408         214 --HSNFILV-------EHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       214 --~~~~~~~-------~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                        ....+..       .++...|+++||..++.....
T Consensus       246 ~~~~~~w~~~~~~~~~g~y~~~l~~aGF~~v~~~~~~  282 (336)
T 2b25_A          246 EVIVRDWLVCLAKQKNGILAQKVESKINTDVQLDSQE  282 (336)
T ss_dssp             CCCCCCEEECC--------------------------
T ss_pred             EecccceEEEeecccccchhhhhcccccccccccccc
Confidence              0011111       277888999999988876554

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.69  E-value=6.9e-17  Score=133.20  Aligned_cols=130  Identities=15%  Similarity=0.147  Sum_probs=104.9

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC---CCCeeEEE
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD---NDSFDGGW  161 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~V~  161 (298)
                      ..++.+|||||||+|..+..++.. .+.+|+++|+|+.+++.+++++...++. +++++++|+.+++..   .++||+|+
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~~~~fD~I~  156 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAGHREAYARAV  156 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcccccCCCceEEE
Confidence            356789999999999999999986 4689999999999999999999998885 599999999887532   47999999


Q ss_pred             ecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeC
Q psy2408         162 FFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       162 ~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  240 (298)
                      +..+    .+. .+++.+.++|+|||++++.....    . ..               ...++...++..||.+.+...+
T Consensus       157 s~a~----~~~~~ll~~~~~~LkpgG~l~~~~g~~----~-~~---------------e~~~~~~~l~~~G~~~~~~~~~  212 (249)
T 3g89_A          157 ARAV----APLCVLSELLLPFLEVGGAAVAMKGPR----V-EE---------------ELAPLPPALERLGGRLGEVLAL  212 (249)
T ss_dssp             EESS----CCHHHHHHHHGGGEEEEEEEEEEECSC----C-HH---------------HHTTHHHHHHHHTEEEEEEEEE
T ss_pred             ECCc----CCHHHHHHHHHHHcCCCeEEEEEeCCC----c-HH---------------HHHHHHHHHHHcCCeEEEEEEe
Confidence            8643    455 99999999999999998864321    1 01               1235677788889988887765

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.69  E-value=1.2e-16  Score=132.34  Aligned_cols=126  Identities=21%  Similarity=0.212  Sum_probs=103.9

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      +.++.+|||+|||+|.++..+++ .+.+|+|+|+|+.+++.+++++...++.  +++.++|+.+. +++++||+|+++..
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~-~g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~-~~~~~fD~Vv~n~~  193 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-LPFGPFDLLVANLY  193 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-GGGCCEEEEEEECC
T ss_pred             cCCCCEEEEecCCCcHHHHHHHH-hCCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhc-CcCCCCCEEEECCc
Confidence            46788999999999999999888 5669999999999999999999988765  88999998762 34578999998654


Q ss_pred             ccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeC
Q psy2408         166 IFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       166 l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  240 (298)
                      .+   .. .++.++.++|+|||+++++.....                      ..+++.+.++++||.++.....
T Consensus       194 ~~---~~~~~l~~~~~~LkpgG~lils~~~~~----------------------~~~~v~~~l~~~Gf~~~~~~~~  244 (254)
T 2nxc_A          194 AE---LHAALAPRYREALVPGGRALLTGILKD----------------------RAPLVREAMAGAGFRPLEEAAE  244 (254)
T ss_dssp             HH---HHHHHHHHHHHHEEEEEEEEEEEEEGG----------------------GHHHHHHHHHHTTCEEEEEEEE
T ss_pred             HH---HHHHHHHHHHHHcCCCCEEEEEeeccC----------------------CHHHHHHHHHHCCCEEEEEecc
Confidence            43   23 899999999999999999765411                      2457889999999999887653

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.69  E-value=1.8e-16  Score=138.59  Aligned_cols=118  Identities=18%  Similarity=0.228  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      .....+.+.......++.+|||+|||+|.++..+++. ++ +|+|+|+| .+++.|++++...++.++++++++|+.+++
T Consensus        48 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  125 (376)
T 3r0q_C           48 MDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS  125 (376)
T ss_dssp             HHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC
T ss_pred             HHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC
Confidence            3445566666677778999999999999999999995 55 99999999 999999999999999888999999999988


Q ss_pred             CCCCCeeEEEeccccccc---ChH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         152 FDNDSFDGGWFFESIFHM---NHS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~---~~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ++ ++||+|++..+.+++   ... .+++++.++|+|||.+++...
T Consensus       126 ~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~  170 (376)
T 3r0q_C          126 LP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA  170 (376)
T ss_dssp             CS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred             cC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence            76 899999996655554   345 899999999999999987544

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.69  E-value=8e-17  Score=130.46  Aligned_cols=125  Identities=22%  Similarity=0.212  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECC
Q psy2408          70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGD  146 (298)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d  146 (298)
                      ......+...++...+..++.+|||+|||+|..+..+++..  +++|+++|+|+.+++.|++++...++. ++++++++|
T Consensus        38 ~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gd  117 (221)
T 3dr5_A           38 DEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSR  117 (221)
T ss_dssp             CHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSC
T ss_pred             CHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcC
Confidence            34556777777777765556699999999999999999864  689999999999999999999999987 789999999


Q ss_pred             CCCC--CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         147 ALNL--PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       147 ~~~~--~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      +.+.  .+++++||+|++...   ..+. .+++++.++|+|||++++.+..+.+
T Consensus       118 a~~~l~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g  168 (221)
T 3dr5_A          118 PLDVMSRLANDSYQLVFGQVS---PMDLKALVDAAWPLLRRGGALVLADALLDG  168 (221)
T ss_dssp             HHHHGGGSCTTCEEEEEECCC---TTTHHHHHHHHHHHEEEEEEEEETTTTGGG
T ss_pred             HHHHHHHhcCCCcCeEEEcCc---HHHHHHHHHHHHHHcCCCcEEEEeCCCCCC
Confidence            8764  233689999987643   2344 8999999999999999997766543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.69  E-value=1.3e-16  Score=125.90  Aligned_cols=121  Identities=14%  Similarity=0.041  Sum_probs=96.2

Q ss_pred             HHHHHHHHHhCC-CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-
Q psy2408          74 DKLSRIMINKTS-ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-  151 (298)
Q Consensus        74 ~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-  151 (298)
                      ..+.+.+++.+. ..++.+|||+|||+|..+..+++....+|+++|+|+.+++.|++++...++.++++++++|+.+.. 
T Consensus        29 ~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  108 (187)
T 2fhp_A           29 DKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE  108 (187)
T ss_dssp             HHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHH
Confidence            445555666553 357789999999999999998885446999999999999999999998887678999999987631 


Q ss_pred             ---CCCCCeeEEEecccccccChH-HHHHHH--hhcccCCcEEEEEeCCC
Q psy2408         152 ---FDNDSFDGGWFFESIFHMNHS-AALNEA--RRVLKSGSILTLTDLPL  195 (298)
Q Consensus       152 ---~~~~~fD~V~~~~~l~~~~~~-~~l~~~--~r~LkpgG~l~i~~~~~  195 (298)
                         .++++||+|++...+. .... ..++.+  .++|+|||.+++.....
T Consensus       109 ~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          109 QFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             HHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             HHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence               2257899999987744 3444 777777  89999999999876553

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.69  E-value=6.6e-17  Score=131.18  Aligned_cols=119  Identities=20%  Similarity=0.308  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      ..++...++..   .++.+|||+|||+|..+..+++..  +++|+++|+|+.+++.|++++...++.++++++++|+.+.
T Consensus        46 ~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  122 (221)
T 3u81_A           46 KGQIMDAVIRE---YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDL  122 (221)
T ss_dssp             HHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred             HHHHHHHHHHh---cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHH
Confidence            34444444443   356799999999999999999863  6799999999999999999999988877899999997552


Q ss_pred             -C-CC----CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCC
Q psy2408         151 -P-FD----NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPL  195 (298)
Q Consensus       151 -~-~~----~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~  195 (298)
                       + ++    .++||+|++....++..+. .++..+ ++|+|||++++.+...
T Consensus       123 l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~  173 (221)
T 3u81_A          123 IPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIV  173 (221)
T ss_dssp             GGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred             HHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence             2 12    2689999998877777666 888888 9999999999987664

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.68  E-value=3e-16  Score=134.73  Aligned_cols=114  Identities=20%  Similarity=0.249  Sum_probs=94.1

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND  155 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  155 (298)
                      ..+.+.+.+...++.+|||+|||+|.++..+++....+|+|+|+| .+++.|++++...++.++++++.+|+.+++++.+
T Consensus        26 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  104 (328)
T 1g6q_1           26 YRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFP  104 (328)
T ss_dssp             HHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSS
T ss_pred             HHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCC
Confidence            334444444445788999999999999999998533499999999 6999999999999988889999999999887778


Q ss_pred             CeeEEEeccc---ccccChH-HHHHHHhhcccCCcEEEE
Q psy2408         156 SFDGGWFFES---IFHMNHS-AALNEARRVLKSGSILTL  190 (298)
Q Consensus       156 ~fD~V~~~~~---l~~~~~~-~~l~~~~r~LkpgG~l~i  190 (298)
                      +||+|++..+   +.+.... .++.++.++|+|||.++.
T Consensus       105 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             cccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            9999998754   3344556 899999999999999874

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.68  E-value=4.5e-16  Score=136.84  Aligned_cols=121  Identities=16%  Similarity=0.126  Sum_probs=97.9

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHH-------HHHHHhcCCC-CceEEEE
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESA-------MKTAKAEGLL-DKVNFLH  144 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a-------~~~~~~~~~~-~~i~~~~  144 (298)
                      ...+..+++.+.+.++.+|||+|||+|.++..+++..+ .+|+|+|+++.+++.|       ++++...++. .++++++
T Consensus       228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~  307 (433)
T 1u2z_A          228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  307 (433)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE
Confidence            45566778888888999999999999999999999655 4799999999999988       8888887853 6799999


Q ss_pred             CCCCCC--CC--CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCC
Q psy2408         145 GDALNL--PF--DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPL  195 (298)
Q Consensus       145 ~d~~~~--~~--~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~  195 (298)
                      +|....  ++  ..++||+|+++.++ +.++. ..|+++.++|+|||++++.+...
T Consensus       308 gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f~  362 (433)
T 1u2z_A          308 KKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSLR  362 (433)
T ss_dssp             SSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             cCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence            865432  12  24689999987666 34555 88999999999999999986543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.68  E-value=8.6e-16  Score=123.62  Aligned_cols=131  Identities=20%  Similarity=0.155  Sum_probs=105.8

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCe
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSF  157 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  157 (298)
                      .+.+..  +++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++...++.+++++..+|..+...+.++|
T Consensus        14 ~i~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~   91 (230)
T 3lec_A           14 KVANYV--PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNI   91 (230)
T ss_dssp             HHHTTS--CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCC
T ss_pred             HHHHhC--CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccccccc
Confidence            344444  578899999999999999999963 34899999999999999999999999888999999998865444479


Q ss_pred             eEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEE
Q psy2408         158 DGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI  235 (298)
Q Consensus       158 D~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  235 (298)
                      |+|+..++.-   +.  .++....+.|+++|+|+++...                        ..+.++.+|.+.||.++
T Consensus        92 D~IviaGmGg---~lI~~IL~~~~~~l~~~~~lIlqp~~------------------------~~~~lr~~L~~~Gf~i~  144 (230)
T 3lec_A           92 DTITICGMGG---RLIADILNNDIDKLQHVKTLVLQPNN------------------------REDDLRKWLAANDFEIV  144 (230)
T ss_dssp             CEEEEEEECH---HHHHHHHHHTGGGGTTCCEEEEEESS------------------------CHHHHHHHHHHTTEEEE
T ss_pred             CEEEEeCCch---HHHHHHHHHHHHHhCcCCEEEEECCC------------------------ChHHHHHHHHHCCCEEE
Confidence            9988654432   22  8899999999999999987532                        13477888999999888


Q ss_pred             EEE
Q psy2408         236 KID  238 (298)
Q Consensus       236 ~~~  238 (298)
                      +..
T Consensus       145 ~E~  147 (230)
T 3lec_A          145 AED  147 (230)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            755

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.68  E-value=1.4e-16  Score=127.32  Aligned_cols=119  Identities=10%  Similarity=0.107  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhCCCC-CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-CC
Q psy2408          74 DKLSRIMINKTSIT-KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-LP  151 (298)
Q Consensus        74 ~~~~~~l~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~~  151 (298)
                      ..+.+.+++.+... ++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++...++ .+++++++|+.+ ++
T Consensus        39 ~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~  117 (202)
T 2fpo_A           39 DRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLA  117 (202)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHS
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHh
Confidence            34444444444322 6789999999999999987775335999999999999999999998887 579999999877 35


Q ss_pred             CCCCCeeEEEecccccccChH-HHHHHHhh--cccCCcEEEEEeCC
Q psy2408         152 FDNDSFDGGWFFESIFHMNHS-AALNEARR--VLKSGSILTLTDLP  194 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r--~LkpgG~l~i~~~~  194 (298)
                      .+.++||+|++...+ +.... .+++.+.+  +|+|||.+++....
T Consensus       118 ~~~~~fD~V~~~~p~-~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          118 QKGTPHNIVFVDPPF-RRGLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             SCCCCEEEEEECCSS-STTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             hcCCCCCEEEECCCC-CCCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            556789999987763 34555 78888865  69999999987654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.67  E-value=1.5e-16  Score=146.36  Aligned_cols=156  Identities=19%  Similarity=0.278  Sum_probs=113.6

Q ss_pred             chhhHHhhhcCCcccccccccCCceeEeeccCCCCCCcHHH--HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHH
Q psy2408          31 GKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQ--GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAK  108 (298)
Q Consensus        31 ~~~~~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~  108 (298)
                      ...+++++++.. .+.|..+++..    +|...........  ........+...+  ..+.+|||||||.|.++..|++
T Consensus        14 ~~~~~~~~~~~~-pe~y~~i~~~~----~~~~~~~r~~~~r~~~i~~~~~~~~~~~--~~~~~vLDvGCG~G~~~~~la~   86 (569)
T 4azs_A           14 GTKDLNTLVSEL-PEIYQTIFGHP----EWDGDAARDCNQRLDLITEQYDNLSRAL--GRPLNVLDLGCAQGFFSLSLAS   86 (569)
T ss_dssp             ---CHHHHHHHS-SCCCBCCTTCG----GGTTTCSBCCHHHHHHHHHHHHHHHHHH--TSCCEEEEETCTTSHHHHHHHH
T ss_pred             ccccHHHHHhhC-HHHHhhhcCCh----hhccccccchHHHHHHHHHHHHHHHhhc--CCCCeEEEECCCCcHHHHHHHh
Confidence            344677788877 78888776643    3543222222211  1122223333333  4568999999999999999999


Q ss_pred             hcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCCCeeEEEecccccccChH---HHHHHHhhccc
Q psy2408         109 AKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDNDSFDGGWFFESIFHMNHS---AALNEARRVLK  183 (298)
Q Consensus       109 ~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~Lk  183 (298)
                       .|++|+|+|+|+.+++.|+..+...+.. ++++.++++.++  ++++++||+|+|+.+++|++++   ..+..+.+.|+
T Consensus        87 -~ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~  164 (569)
T 4azs_A           87 -KGATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLA  164 (569)
T ss_dssp             -TTCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCCTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHH
T ss_pred             -CCCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhccCCCccEEEECcchhcCCCHHHHHHHHHHHHHhc
Confidence             6999999999999999999999877642 599999999887  4557899999999999999988   55667788888


Q ss_pred             CCcEEEEEeCCC
Q psy2408         184 SGSILTLTDLPL  195 (298)
Q Consensus       184 pgG~l~i~~~~~  195 (298)
                      ++|..++.....
T Consensus       165 ~~~~~~~~~~~~  176 (569)
T 4azs_A          165 DVTQAVILELAV  176 (569)
T ss_dssp             HHSSEEEEECCC
T ss_pred             cccceeeEEecc
Confidence            888777765543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.67  E-value=6.1e-16  Score=134.92  Aligned_cols=156  Identities=21%  Similarity=0.274  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHhCC--CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC
Q psy2408          70 AQGSDKLSRIMINKTS--ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA  147 (298)
Q Consensus        70 ~~~~~~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~  147 (298)
                      ......+.+.+.+.+.  ..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...++.  ++++++|+
T Consensus       213 d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~  289 (381)
T 3dmg_A          213 DPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEANALK--AQALHSDV  289 (381)
T ss_dssp             CHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEECST
T ss_pred             CHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcch
Confidence            3455666666665542  346789999999999999999995 789999999999999999999988764  89999999


Q ss_pred             CCCCCCCCCeeEEEecccccc-----cChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcc
Q psy2408         148 LNLPFDNDSFDGGWFFESIFH-----MNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVE  221 (298)
Q Consensus       148 ~~~~~~~~~fD~V~~~~~l~~-----~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (298)
                      .+.+.++++||+|+++..+++     .... .+++++.++|+|||.+++........   .......+.           
T Consensus       290 ~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~---~~~l~~~f~-----------  355 (381)
T 3dmg_A          290 DEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKY---EPLLEEKFG-----------  355 (381)
T ss_dssp             TTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCH---HHHHHHHHS-----------
T ss_pred             hhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCCh---HHHHHHhhc-----------
Confidence            988666689999999988887     3334 99999999999999999976543210   011111111           


Q ss_pred             hHHHHHHhCCCcEEEEEeCCCC
Q psy2408         222 HYPDLLNKSGFELIKIDDITSH  243 (298)
Q Consensus       222 ~~~~~l~~~Gf~~~~~~~~~~~  243 (298)
                      .+..+ +..||.+........+
T Consensus       356 ~v~~l-~~~gF~Vl~a~~~~~~  376 (381)
T 3dmg_A          356 AFQTL-KVAEYKVLFAEKRGRH  376 (381)
T ss_dssp             CCEEE-EESSSEEEEEECC---
T ss_pred             cEEEE-eCCCEEEEEEEEeccc
Confidence            12223 7789999887765544

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.67  E-value=5e-16  Score=126.79  Aligned_cols=112  Identities=20%  Similarity=0.229  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+...+++.+.+.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++++...+   ++.++++|+.+...+
T Consensus        56 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~  131 (231)
T 1vbf_A           56 LNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEE  131 (231)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGG
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHH-cCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCccccccc
Confidence            456677788888888999999999999999999985 5899999999999999999987654   699999999873224


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +++||+|++..+++++.+     ++.++|+|||++++....
T Consensus       132 ~~~fD~v~~~~~~~~~~~-----~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          132 EKPYDRVVVWATAPTLLC-----KPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             GCCEEEEEESSBBSSCCH-----HHHHTEEEEEEEEEEECS
T ss_pred             CCCccEEEECCcHHHHHH-----HHHHHcCCCcEEEEEEcC
Confidence            578999999999998875     688999999999998654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.67  E-value=2.5e-16  Score=128.74  Aligned_cols=108  Identities=15%  Similarity=0.223  Sum_probs=92.1

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-C-CCCCCeeEEEec
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-P-FDNDSFDGGWFF  163 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~fD~V~~~  163 (298)
                      .++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.|++++...++.++++++++|+.+. + ..+++||+|++.
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~  149 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID  149 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence            467899999999999999999853 6899999999999999999999999877899999999775 3 236899999975


Q ss_pred             ccccccChH-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         164 ESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       164 ~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      ..   .... .+++++.++|+|||++++.+..+.+
T Consensus       150 ~~---~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g  181 (232)
T 3ntv_A          150 AA---KAQSKKFFEIYTPLLKHQGLVITDNVLYHG  181 (232)
T ss_dssp             TT---SSSHHHHHHHHGGGEEEEEEEEEECTTGGG
T ss_pred             Cc---HHHHHHHHHHHHHhcCCCeEEEEeeCCcCc
Confidence            43   3445 8999999999999999997766544

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.67  E-value=4.4e-16  Score=133.18  Aligned_cols=115  Identities=18%  Similarity=0.195  Sum_probs=99.4

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ......+++.+.+.++.+|||+|||+|.++..+++..  ..+|+++|+|+.+++.|++++...+++ ++.++++|+.+.+
T Consensus        61 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~  139 (317)
T 1dl5_A           61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGV  139 (317)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhcc
Confidence            4567778888888899999999999999999999863  246999999999999999999988875 4999999998854


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .+.++||+|++..++++++     +++.++|+|||++++....
T Consensus       140 ~~~~~fD~Iv~~~~~~~~~-----~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          140 PEFSPYDVIFVTVGVDEVP-----ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             GGGCCEEEEEECSBBSCCC-----HHHHHHEEEEEEEEEEBCB
T ss_pred             ccCCCeEEEEEcCCHHHHH-----HHHHHhcCCCcEEEEEECC
Confidence            4567899999999999987     4678899999999998654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.67  E-value=8.8e-16  Score=123.90  Aligned_cols=115  Identities=20%  Similarity=0.140  Sum_probs=97.5

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ......+++.+.+.++.+|||+|||+|..+..+++..+  .+|+++|+|+.+++.+++++...+++ ++.+..+|+....
T Consensus        63 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~  141 (215)
T 2yxe_A           63 IHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGY  141 (215)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCC
T ss_pred             HHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCC
Confidence            44566777777888999999999999999999998754  79999999999999999999887764 5999999985532


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ...++||+|++..+++++++     ++.++|+|||++++....
T Consensus       142 ~~~~~fD~v~~~~~~~~~~~-----~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          142 EPLAPYDRIYTTAAGPKIPE-----PLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             GGGCCEEEEEESSBBSSCCH-----HHHHTEEEEEEEEEEESS
T ss_pred             CCCCCeeEEEECCchHHHHH-----HHHHHcCCCcEEEEEECC
Confidence            22578999999999998874     789999999999998654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.66  E-value=9.7e-16  Score=133.53  Aligned_cols=119  Identities=18%  Similarity=0.237  Sum_probs=98.2

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCC--ceEEEECCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLD--KVNFLHGDALNLP  151 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~--~i~~~~~d~~~~~  151 (298)
                      ...+.+++.+...++.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.+++++...++..  +++++..|+.+ +
T Consensus       209 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~  287 (375)
T 4dcm_A          209 IGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-G  287 (375)
T ss_dssp             HHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-T
T ss_pred             HHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-c
Confidence            345566788877777899999999999999999974 7899999999999999999999887653  57889999988 4


Q ss_pred             CCCCCeeEEEecccccccC---h-H--HHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 FDNDSFDGGWFFESIFHMN---H-S--AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~---~-~--~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +++++||+|+++..+++..   + .  .+++++.++|+|||++++....
T Consensus       288 ~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~  336 (375)
T 4dcm_A          288 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  336 (375)
T ss_dssp             CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence            5678999999998887532   2 1  7899999999999999997544

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.66  E-value=7.2e-16  Score=128.79  Aligned_cols=150  Identities=21%  Similarity=0.241  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ...+...+...+. .++.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.+++..      .++.+..+|+..++
T Consensus        71 ~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~  143 (269)
T 1p91_A           71 RDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLP  143 (269)
T ss_dssp             HHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCS
T ss_pred             HHHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCC
Confidence            3444444444442 467899999999999999999864 789999999999999998774      35889999999988


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCC
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG  231 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  231 (298)
                      +++++||+|++..+.      .+++++.++|+|||++++..+....       ...+.... .........  ..+..+|
T Consensus       144 ~~~~~fD~v~~~~~~------~~l~~~~~~L~pgG~l~~~~~~~~~-------~~~~~~~~-~~~~~~~~~--~~~~~~g  207 (269)
T 1p91_A          144 FSDTSMDAIIRIYAP------CKAEELARVVKPGGWVITATPGPRH-------LMELKGLI-YNEVHLHAP--HAEQLEG  207 (269)
T ss_dssp             BCTTCEEEEEEESCC------CCHHHHHHHEEEEEEEEEEEECTTT-------THHHHTTT-CSSCCCCCC--CCCCCTT
T ss_pred             CCCCceeEEEEeCCh------hhHHHHHHhcCCCcEEEEEEcCHHH-------HHHHHHHh-hcccccccc--hhhHhcC
Confidence            888899999986653      3688999999999999998766422       11111111 111111111  2446789


Q ss_pred             CcEEEEEeCCCCcc
Q psy2408         232 FELIKIDDITSHVM  245 (298)
Q Consensus       232 f~~~~~~~~~~~~~  245 (298)
                      |++++...+.....
T Consensus       208 f~~~~~~~~~~~~~  221 (269)
T 1p91_A          208 FTLQQSAELCYPMR  221 (269)
T ss_dssp             EEEEEEEEEEEEEE
T ss_pred             CcEEEEEEEEEEEE
Confidence            99998877665543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.66  E-value=4.8e-16  Score=139.48  Aligned_cols=117  Identities=17%  Similarity=0.241  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      ...+.+.+++.+...++.+|||||||+|.++..+++....+|+|+|+|+ +++.|++++...++.++++++.+|+.++++
T Consensus       143 t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~  221 (480)
T 3b3j_A          143 TGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL  221 (480)
T ss_dssp             HHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC
T ss_pred             HHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc
Confidence            3455666777776667889999999999999999885456999999998 999999999999988889999999998776


Q ss_pred             CCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEE
Q psy2408         153 DNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~  191 (298)
                      + ++||+|++..+++++...   ..+.++.++|+|||.+++.
T Consensus       222 ~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          222 P-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             S-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             C-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence            5 689999998887777543   7888999999999999853

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.66  E-value=8.3e-16  Score=129.17  Aligned_cols=114  Identities=19%  Similarity=0.250  Sum_probs=99.2

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhc-C-CCCceEEEECCCCCCC
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAE-G-LLDKVNFLHGDALNLP  151 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~-~-~~~~i~~~~~d~~~~~  151 (298)
                      ....++..+.+.++.+|||+|||+|.++..+++..  +.+|+++|+|+.+++.|++++... + +..++.++++|+.+.+
T Consensus        87 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~  166 (280)
T 1i9g_A           87 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE  166 (280)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred             HHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence            44567777888899999999999999999999863  579999999999999999998876 4 4467999999998887


Q ss_pred             CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +++++||+|++     +++++ .+++++.++|+|||++++..+.
T Consensus       167 ~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~  205 (280)
T 1i9g_A          167 LPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVAT  205 (280)
T ss_dssp             CCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             CCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            77789999987     45677 9999999999999999998765

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.66  E-value=1.6e-15  Score=121.89  Aligned_cols=124  Identities=18%  Similarity=0.153  Sum_probs=100.9

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC-CeeEEEecc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND-SFDGGWFFE  164 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~fD~V~~~~  164 (298)
                      +++.+|||||||+|.++..++... ..+|+++|+++.+++.|++++...++.+++++..+|..+ +++.+ +||+|+...
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~-~l~~~~~~D~IviaG   92 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA-AFEETDQVSVITIAG   92 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-GCCGGGCCCEEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhh-hcccCcCCCEEEEcC
Confidence            578899999999999999999963 458999999999999999999999998889999999865 22333 699998755


Q ss_pred             cccccChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEE
Q psy2408         165 SIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       165 ~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                      +.-   +.  .++......|+|+|++++....                        ..+.++.+|.+.||.+++..
T Consensus        93 ~Gg---~~i~~Il~~~~~~L~~~~~lVlq~~~------------------------~~~~vr~~L~~~Gf~i~~e~  141 (225)
T 3kr9_A           93 MGG---RLIARILEEGLGKLANVERLILQPNN------------------------REDDLRIWLQDHGFQIVAES  141 (225)
T ss_dssp             ECH---HHHHHHHHHTGGGCTTCCEEEEEESS------------------------CHHHHHHHHHHTTEEEEEEE
T ss_pred             CCh---HHHHHHHHHHHHHhCCCCEEEEECCC------------------------CHHHHHHHHHHCCCEEEEEE
Confidence            421   22  8999999999999999986432                        13467788999999888654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.66  E-value=2.6e-15  Score=123.81  Aligned_cols=112  Identities=18%  Similarity=0.180  Sum_probs=97.9

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS  156 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  156 (298)
                      ...++..+.+.++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++....++..++++...|+.+...++++
T Consensus        80 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  158 (248)
T 2yvl_A           80 SFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI  158 (248)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence            346677778889999999999999999999996 8899999999999999999999888867899999999885435678


Q ss_pred             eeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         157 FDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ||+|++     +.+++ .+++++.++|+|||++++....
T Consensus       159 ~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          159 FHAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             BSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             ccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            999987     45677 9999999999999999998754

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.66  E-value=1.5e-15  Score=123.22  Aligned_cols=131  Identities=16%  Similarity=0.099  Sum_probs=104.0

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCe
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSF  157 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  157 (298)
                      .+.+.+  +++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++...++.+++++..+|..+...+.++|
T Consensus        14 ~i~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~   91 (244)
T 3gnl_A           14 KVASYI--TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAI   91 (244)
T ss_dssp             HHHTTC--CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCC
T ss_pred             HHHHhC--CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccc
Confidence            344444  578899999999999999999963 34899999999999999999999999888999999998754333469


Q ss_pred             eEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEE
Q psy2408         158 DGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI  235 (298)
Q Consensus       158 D~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  235 (298)
                      |+|++..+.-   +.  .++....+.|+++|+|+++...                        ..+.++.+|.+.||.++
T Consensus        92 D~IviagmGg---~lI~~IL~~~~~~L~~~~~lIlq~~~------------------------~~~~lr~~L~~~Gf~i~  144 (244)
T 3gnl_A           92 DTIVIAGMGG---TLIRTILEEGAAKLAGVTKLILQPNI------------------------AAWQLREWSEQNNWLIT  144 (244)
T ss_dssp             CEEEEEEECH---HHHHHHHHHTGGGGTTCCEEEEEESS------------------------CHHHHHHHHHHHTEEEE
T ss_pred             cEEEEeCCch---HHHHHHHHHHHHHhCCCCEEEEEcCC------------------------ChHHHHHHHHHCCCEEE
Confidence            9998744322   22  8899999999999999997532                        13467788888899875


Q ss_pred             EEE
Q psy2408         236 KID  238 (298)
Q Consensus       236 ~~~  238 (298)
                      +..
T Consensus       145 ~E~  147 (244)
T 3gnl_A          145 SEA  147 (244)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            533

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.65  E-value=1.1e-15  Score=127.21  Aligned_cols=104  Identities=21%  Similarity=0.200  Sum_probs=84.5

Q ss_pred             CCCeEEEeCCCCCH----HHHHHHHhc-----CCeEEEEeCCHHHHHHHHHHHHh-----------------------cC
Q psy2408          88 KGQRFIDIGCGFGL----SGIRLAKAK-----GCRVDGITISKFQQESAMKTAKA-----------------------EG  135 (298)
Q Consensus        88 ~~~~vLDiGcG~G~----~~~~l~~~~-----~~~v~~vD~s~~~l~~a~~~~~~-----------------------~~  135 (298)
                      ++.+|||+|||+|.    +++.+++..     +.+|+|+|+|+.+++.|++..-.                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    566666642     25899999999999999986410                       00


Q ss_pred             -------CCCceEEEECCCCCCCCC-CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEE
Q psy2408         136 -------LLDKVNFLHGDALNLPFD-NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       136 -------~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~  191 (298)
                             +..++.|.+.|+.+.|++ .++||+|+|..++.|+.++   .+++++++.|+|||+|++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                   013689999999886554 5789999999999999876   9999999999999999884

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.65  E-value=5e-16  Score=128.16  Aligned_cols=117  Identities=17%  Similarity=0.192  Sum_probs=94.8

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-  150 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-  150 (298)
                      ..+...++..   .++.+|||||||+|..+..+++..  +.+|+++|+|+.+++.|++++...++.++++++++|+.+. 
T Consensus        52 ~~~l~~l~~~---~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l  128 (248)
T 3tfw_A           52 GQFLALLVRL---TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSL  128 (248)
T ss_dssp             HHHHHHHHHH---HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred             HHHHHHHHhh---cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence            3444444333   467899999999999999999864  5799999999999999999999999888899999998763 


Q ss_pred             CCC--CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         151 PFD--NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       151 ~~~--~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      +..  .++||+|++...   ..+. .+++++.++|+|||+|++.+..+.
T Consensus       129 ~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~~  174 (248)
T 3tfw_A          129 ESLGECPAFDLIFIDAD---KPNNPHYLRWALRYSRPGTLIIGDNVVRD  174 (248)
T ss_dssp             HTCCSCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred             HhcCCCCCeEEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence            322  348999998552   3344 899999999999999999877654

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.65  E-value=6.5e-16  Score=123.89  Aligned_cols=99  Identities=17%  Similarity=0.226  Sum_probs=86.6

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      ++.+|||+|||+|..+..++... +.+++++|+|+.+++.+++++...++.. ++++++|+.+++ +.++||+|++..  
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~~~~D~i~~~~--  140 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFP-SEPPFDGVISRA--  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSC-CCSCEEEEECSC--
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCC-ccCCcCEEEEec--
Confidence            47899999999999999999863 6799999999999999999999888754 999999998875 457899999754  


Q ss_pred             cccChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         167 FHMNHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                        +.+. .+++++.++|+|||++++..
T Consensus       141 --~~~~~~~l~~~~~~L~~gG~l~~~~  165 (207)
T 1jsx_A          141 --FASLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             --SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             --cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence              3556 99999999999999999873

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.65  E-value=6e-15  Score=120.04  Aligned_cols=147  Identities=14%  Similarity=0.125  Sum_probs=104.6

Q ss_pred             HHHHH---HHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          76 LSRIM---INKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        76 ~~~~l---~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      +...+   ++.+.+.++.+|||+|||+|.++..+++..  +.+|+++|+|+.+++.+++.+...   .++.++++|+.+.
T Consensus        58 ~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~  134 (227)
T 1g8a_A           58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKP  134 (227)
T ss_dssp             HHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCG
T ss_pred             HHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCc
Confidence            34555   444457788999999999999999999864  379999999999999999887654   5799999999873


Q ss_pred             C---CCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHH
Q psy2408         151 P---FDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPD  225 (298)
Q Consensus       151 ~---~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (298)
                      .   ...++||+|++...   .++.  .++.++.++|+|||++++.......... .. ...          +...++..
T Consensus       135 ~~~~~~~~~~D~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~-~~~----------~~~~~l~~  199 (227)
T 1g8a_A          135 EEYRALVPKVDVIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVT-KE-PEQ----------VFREVERE  199 (227)
T ss_dssp             GGGTTTCCCEEEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTT-SC-HHH----------HHHHHHHH
T ss_pred             chhhcccCCceEEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCC-CC-hhh----------hhHHHHHH
Confidence            1   12368999997654   3334  5599999999999999997222111111 00 011          12345666


Q ss_pred             HHHhCCCcEEEEEeCCC
Q psy2408         226 LLNKSGFELIKIDDITS  242 (298)
Q Consensus       226 ~l~~~Gf~~~~~~~~~~  242 (298)
                      + .++ |++++...+..
T Consensus       200 l-~~~-f~~~~~~~~~~  214 (227)
T 1g8a_A          200 L-SEY-FEVIERLNLEP  214 (227)
T ss_dssp             H-HTT-SEEEEEEECTT
T ss_pred             H-Hhh-ceeeeEeccCc
Confidence            5 777 99988777643

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.65  E-value=5.2e-17  Score=130.87  Aligned_cols=142  Identities=16%  Similarity=0.133  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          73 SDKLSRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        73 ~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      ...+.+.+++.+.. .++.+|||+|||+|..+..+++.. +.+++|+|+|+.+++.+++++...++  +++++++|+.+ 
T Consensus        14 ~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~-   90 (215)
T 4dzr_A           14 TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIE-   90 (215)
T ss_dssp             HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHH-
T ss_pred             HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHh-
Confidence            45677777777765 678899999999999999999964 56999999999999999999887765  68888898877 


Q ss_pred             CCCC-----CCeeEEEecccccccC------h---------------------HHHHHHHhhcccCCcEEEEEeCCCCCC
Q psy2408         151 PFDN-----DSFDGGWFFESIFHMN------H---------------------SAALNEARRVLKSGSILTLTDLPLLSV  198 (298)
Q Consensus       151 ~~~~-----~~fD~V~~~~~l~~~~------~---------------------~~~l~~~~r~LkpgG~l~i~~~~~~~~  198 (298)
                      ++++     ++||+|+++..+....      .                     ..+++++.++|+|||++++.+...   
T Consensus        91 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---  167 (215)
T 4dzr_A           91 WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH---  167 (215)
T ss_dssp             HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT---
T ss_pred             hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC---
Confidence            4444     8999999964432221      1                     267788999999999955544431   


Q ss_pred             CCChhHHHHHHHhhcccCCCCcchHHHHHH--hCCCcEEEEEe
Q psy2408         199 SKNDNKFKEYVKKNIHSNFILVEHYPDLLN--KSGFELIKIDD  239 (298)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~Gf~~~~~~~  239 (298)
                                         ...+.+..+++  ++||..+....
T Consensus       168 -------------------~~~~~~~~~l~~~~~gf~~~~~~~  191 (215)
T 4dzr_A          168 -------------------NQADEVARLFAPWRERGFRVRKVK  191 (215)
T ss_dssp             -------------------SCHHHHHHHTGGGGGGTEECCEEE
T ss_pred             -------------------ccHHHHHHHHHHhhcCCceEEEEE
Confidence                               12345667777  88887665443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.65  E-value=1.2e-17  Score=137.43  Aligned_cols=138  Identities=20%  Similarity=0.194  Sum_probs=108.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccc
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIF  167 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~  167 (298)
                      ++.+|||+|||+|..+..+++ .+.+|+|+|+|+.+++.+++++...++..++.++++|+.+++ ++++||+|++..+++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~  155 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFAL-TGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG  155 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS
T ss_pred             CCCEEEECccccCHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC
Confidence            678999999999999999998 478999999999999999999999888668999999998876 568999999999999


Q ss_pred             ccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh--hcccCCCCcchHHHHHHhCCCcEEEEEe
Q psy2408         168 HMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK--NIHSNFILVEHYPDLLNKSGFELIKIDD  239 (298)
Q Consensus       168 ~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  239 (298)
                      +..+. ..+.++.++|+|||.+++....            .....  ...+.....+++..++...|...+....
T Consensus       156 ~~~~~~~~~~~~~~~L~pgG~~i~~~~~------------~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~~~  218 (241)
T 3gdh_A          156 GPDYATAETFDIRTMMSPDGFEIFRLSK------------KITNNIVYFLPRNADIDQVASLAGPGGQVEIEQNF  218 (241)
T ss_dssp             SGGGGGSSSBCTTTSCSSCHHHHHHHHH------------HHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEEEE
T ss_pred             CcchhhhHHHHHHhhcCCcceeHHHHHH------------hhCCceEEECCCCCCHHHHHHHhccCCCEEEEehh
Confidence            88887 7888999999999986553211            11000  1123445566777777777765554433

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.65  E-value=5.8e-16  Score=126.61  Aligned_cols=109  Identities=24%  Similarity=0.312  Sum_probs=92.1

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-CCC--CCCeeEEE
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-PFD--NDSFDGGW  161 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~--~~~fD~V~  161 (298)
                      ..++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.|++++...++..++.++++|+.+. +..  +++||+|+
T Consensus        52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  131 (233)
T 2gpy_A           52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF  131 (233)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence            3567899999999999999999875 6899999999999999999999988877899999999874 322  47899999


Q ss_pred             ecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         162 FFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       162 ~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      +.....   +. .+++++.++|+|||++++.+..+..
T Consensus       132 ~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~~~g  165 (233)
T 2gpy_A          132 IDAAKG---QYRRFFDMYSPMVRPGGLILSDNVLFRG  165 (233)
T ss_dssp             EEGGGS---CHHHHHHHHGGGEEEEEEEEEETTTC--
T ss_pred             ECCCHH---HHHHHHHHHHHHcCCCeEEEEEcCCcCC
Confidence            876643   55 9999999999999999998765443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.64  E-value=2e-15  Score=123.55  Aligned_cols=114  Identities=18%  Similarity=0.205  Sum_probs=95.7

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+...+++.+.+.++.+|||+|||+|.++..+++..+.+|+++|+++.+++.+++++...++. ++.++.+|+ ..+++
T Consensus        77 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~-~~~~~  154 (235)
T 1jg1_A           77 PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDG-SKGFP  154 (235)
T ss_dssp             HHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCG-GGCCG
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCc-ccCCC
Confidence            3455667777778889999999999999999999865589999999999999999999988875 499999997 33444


Q ss_pred             C-CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         154 N-DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       154 ~-~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      . .+||+|++..+++++.+     ++.++|+|||++++....
T Consensus       155 ~~~~fD~Ii~~~~~~~~~~-----~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          155 PKAPYDVIIVTAGAPKIPE-----PLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             GGCCEEEEEECSBBSSCCH-----HHHHTEEEEEEEEEEECS
T ss_pred             CCCCccEEEECCcHHHHHH-----HHHHhcCCCcEEEEEEec
Confidence            3 35999999999988775     688999999999998654

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.64  E-value=1.3e-15  Score=129.99  Aligned_cols=141  Identities=18%  Similarity=0.137  Sum_probs=106.3

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      ...+...+.+.++.+|||+|||+|..+..+++..  +.+|+++|+|+.+++.+++++...++. ++.++++|+..++...
T Consensus       107 s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~  185 (315)
T 1ixk_A          107 SMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELN  185 (315)
T ss_dssp             HHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGC
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhccccc
Confidence            3344455567889999999999999999999864  379999999999999999999988875 6999999998875445


Q ss_pred             CCeeEEEec------ccccccCh----------------H-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh
Q psy2408         155 DSFDGGWFF------ESIFHMNH----------------S-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK  211 (298)
Q Consensus       155 ~~fD~V~~~------~~l~~~~~----------------~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~  211 (298)
                      ++||+|++.      .++.+.++                . .+|+++.++|||||++++++........           
T Consensus       186 ~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~En-----------  254 (315)
T 1ixk_A          186 VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEEN-----------  254 (315)
T ss_dssp             CCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGT-----------
T ss_pred             ccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHh-----------
Confidence            789999973      23332221                2 7899999999999999998765332111           


Q ss_pred             hcccCCCCcchHHHHHHhCCCcEEEE
Q psy2408         212 NIHSNFILVEHYPDLLNKSGFELIKI  237 (298)
Q Consensus       212 ~~~~~~~~~~~~~~~l~~~Gf~~~~~  237 (298)
                              ...+...+++.||+++..
T Consensus       255 --------e~~v~~~l~~~~~~~~~~  272 (315)
T 1ixk_A          255 --------EFVIQWALDNFDVELLPL  272 (315)
T ss_dssp             --------HHHHHHHHHHSSEEEECC
T ss_pred             --------HHHHHHHHhcCCCEEecC
Confidence                    123456677788876643

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.64  E-value=4.6e-15  Score=128.80  Aligned_cols=120  Identities=23%  Similarity=0.165  Sum_probs=101.0

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ..+...++..+.+.++.+|||+|||+|.++..++...  +.+++|+|+|+.+++.|++++...++. ++++.++|+.+++
T Consensus       189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~  267 (354)
T 3tma_A          189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLP  267 (354)
T ss_dssp             HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGG
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCc
Confidence            4566777888888889999999999999999999864  379999999999999999999999987 8999999999987


Q ss_pred             CCCCCeeEEEecccccc-------cCh-H-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 FDNDSFDGGWFFESIFH-------MNH-S-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~-------~~~-~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .+.+.||+|+++-....       ... . .+++++.++|+|||++++....
T Consensus       268 ~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~  319 (354)
T 3tma_A          268 RFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR  319 (354)
T ss_dssp             GTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             cccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            66678999999644322       111 2 7899999999999999997543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.64  E-value=1.4e-15  Score=126.28  Aligned_cols=113  Identities=17%  Similarity=0.192  Sum_probs=93.0

Q ss_pred             HHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHh---cCCCCceEEEECCCCCC-----
Q psy2408          80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKA---EGLLDKVNFLHGDALNL-----  150 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~---~~~~~~i~~~~~d~~~~-----  150 (298)
                      +...+...++.+|||+|||+|.++..+++.. +.+|+++|+++.+++.|++++..   .++.+++.++++|+.++     
T Consensus        28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~  107 (260)
T 2ozv_A           28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARV  107 (260)
T ss_dssp             HHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHH
T ss_pred             HHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhh
Confidence            4455666778899999999999999999875 57999999999999999999987   77777899999999887     


Q ss_pred             --CCCCCCeeEEEeccccccc------------------ChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         151 --PFDNDSFDGGWFFESIFHM------------------NHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       151 --~~~~~~fD~V~~~~~l~~~------------------~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                        ++++++||+|+++-.+...                  ... .+++.+.++|+|||++++..
T Consensus       108 ~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  170 (260)
T 2ozv_A          108 EAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS  170 (260)
T ss_dssp             HTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence              2557899999997333221                  123 88999999999999998864

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.63  E-value=4e-15  Score=120.97  Aligned_cols=112  Identities=19%  Similarity=0.219  Sum_probs=92.0

Q ss_pred             HHHHHhCC--CCCCCeEEEeCCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCC----CCceEEEECCCCC
Q psy2408          78 RIMINKTS--ITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGL----LDKVNFLHGDALN  149 (298)
Q Consensus        78 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~----~~~i~~~~~d~~~  149 (298)
                      ..+++.+.  +.++.+|||+|||+|..+..+++..+  .+|+++|+|+.+++.+++++...++    ..++.++++|+..
T Consensus        65 ~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  144 (226)
T 1i1n_A           65 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM  144 (226)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             HHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc
Confidence            34455554  67889999999999999999998654  6999999999999999999887653    3479999999987


Q ss_pred             CCCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         150 LPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       150 ~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .+.+.++||+|++..+++++.     +++.++|+|||++++....
T Consensus       145 ~~~~~~~fD~i~~~~~~~~~~-----~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          145 GYAEEAPYDAIHVGAAAPVVP-----QALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             CCGGGCCEEEEEECSBBSSCC-----HHHHHTEEEEEEEEEEESC
T ss_pred             CcccCCCcCEEEECCchHHHH-----HHHHHhcCCCcEEEEEEec
Confidence            654567899999988887654     4788999999999997654

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.63  E-value=2.4e-15  Score=124.30  Aligned_cols=121  Identities=15%  Similarity=0.074  Sum_probs=93.8

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh--c-CCeEEEEeCCHHHHHHHHHHHHhc---CCCCc--------
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA--K-GCRVDGITISKFQQESAMKTAKAE---GLLDK--------  139 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~-~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~--------  139 (298)
                      ..+...+++.+...++.+|||+|||+|.++..+++.  . +.+|+|+|+|+.+++.|++++...   ++..+        
T Consensus        37 ~~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~  116 (250)
T 1o9g_A           37 TEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQS  116 (250)
T ss_dssp             HHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhh
Confidence            456677777765556789999999999999999885  2 569999999999999999887654   33222        


Q ss_pred             -----------------eE-------------EEECCCCCCCC-----CCCCeeEEEecccccccCh---------H-HH
Q psy2408         140 -----------------VN-------------FLHGDALNLPF-----DNDSFDGGWFFESIFHMNH---------S-AA  174 (298)
Q Consensus       140 -----------------i~-------------~~~~d~~~~~~-----~~~~fD~V~~~~~l~~~~~---------~-~~  174 (298)
                                       ++             ++++|+.+...     +.++||+|+++..+.+...         . .+
T Consensus       117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~  196 (250)
T 1o9g_A          117 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGL  196 (250)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHH
T ss_pred             hhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHH
Confidence                             56             99999887421     3458999999866554432         2 89


Q ss_pred             HHHHhhcccCCcEEEEEeCC
Q psy2408         175 LNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       175 l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ++++.++|+|||++++....
T Consensus       197 l~~~~~~LkpgG~l~~~~~~  216 (250)
T 1o9g_A          197 LRSLASALPAHAVIAVTDRS  216 (250)
T ss_dssp             HHHHHHHSCTTCEEEEEESS
T ss_pred             HHHHHHhcCCCcEEEEeCcc
Confidence            99999999999999996544

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.63  E-value=2.5e-15  Score=122.78  Aligned_cols=106  Identities=23%  Similarity=0.360  Sum_probs=84.2

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHh------cCCCCceEEEECCCCC-CC--CCCCC
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKA------EGLLDKVNFLHGDALN-LP--FDNDS  156 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~------~~~~~~i~~~~~d~~~-~~--~~~~~  156 (298)
                      .++.+|||||||+|.++..+++.. +..|+|+|+|+.|++.|++++..      .++ .++.++++|+.+ ++  +++++
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~~  123 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKGQ  123 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTTC
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCcC
Confidence            466799999999999999999864 67999999999999999988753      233 579999999987 55  67889


Q ss_pred             eeEEEecccccccCh---------HHHHHHHhhcccCCcEEEEEeC
Q psy2408         157 FDGGWFFESIFHMNH---------SAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       157 fD~V~~~~~l~~~~~---------~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ||.|++...-.+...         +.+++++.++|+|||.|++...
T Consensus       124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td  169 (235)
T 3ckk_A          124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD  169 (235)
T ss_dssp             EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence            999987544332221         2699999999999999998753

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.62  E-value=2.9e-16  Score=121.90  Aligned_cols=103  Identities=16%  Similarity=0.175  Sum_probs=85.0

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-C-C--CCCCeeEEEec
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-P-F--DNDSFDGGWFF  163 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~--~~~~fD~V~~~  163 (298)
                      ++.+|||+|||+|..+..+++. +..++|+|+|+.+++.+++++...++  +++++++|+.+. + .  ..++||+|++.
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~  117 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMA  117 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence            6789999999999999999984 66799999999999999999988776  689999998763 2 1  12489999998


Q ss_pred             ccccccChH-HHHHHHh--hcccCCcEEEEEeCCC
Q psy2408         164 ESIFHMNHS-AALNEAR--RVLKSGSILTLTDLPL  195 (298)
Q Consensus       164 ~~l~~~~~~-~~l~~~~--r~LkpgG~l~i~~~~~  195 (298)
                      ..++  ... .+++.+.  ++|+|||.+++.....
T Consensus       118 ~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          118 PPYA--MDLAALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             CCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             CCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence            7765  344 6666666  9999999999977653

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.62  E-value=1.2e-15  Score=123.89  Aligned_cols=119  Identities=20%  Similarity=0.255  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN  149 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~  149 (298)
                      ...++...++..   .++.+|||+|||+|..+..+++..  +++|+++|+++.+++.+++++...++.++++++++|+.+
T Consensus        45 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  121 (223)
T 3duw_A           45 TQGKFLQLLVQI---QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD  121 (223)
T ss_dssp             HHHHHHHHHHHH---HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             HHHHHHHHHHHh---hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            334444444433   467899999999999999999974  679999999999999999999999988789999999865


Q ss_pred             C-C-CC---CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         150 L-P-FD---NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       150 ~-~-~~---~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      . + ++   .++||+|++...   .... .+++++.++|+|||.+++.+..+.
T Consensus       122 ~~~~~~~~~~~~fD~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  171 (223)
T 3duw_A          122 SLQQIENEKYEPFDFIFIDAD---KQNNPAYFEWALKLSRPGTVIIGDNVVRE  171 (223)
T ss_dssp             HHHHHHHTTCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred             HHHHHHhcCCCCcCEEEEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            3 1 11   157999997654   2344 899999999999999998876654

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.61  E-value=2.7e-15  Score=120.68  Aligned_cols=117  Identities=21%  Similarity=0.253  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      ...+...++..   .++.+|||+|||+|..+..+++..  +.+|+++|+|+.+++.|++++...++.++++++++|+.+.
T Consensus        44 ~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  120 (210)
T 3c3p_A           44 TGRLLYLLARI---KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI  120 (210)
T ss_dssp             HHHHHHHHHHH---HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH
T ss_pred             HHHHHHHHHHh---hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH
Confidence            34444444443   356799999999999999999864  6799999999999999999999888777899999998764


Q ss_pred             -CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         151 -PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       151 -~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                       +..++ ||+|++...   ..+. .+++++.++|+|||++++.+..+.
T Consensus       121 ~~~~~~-fD~v~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  164 (210)
T 3c3p_A          121 AAGQRD-IDILFMDCD---VFNGADVLERMNRCLAKNALLIAVNALRR  164 (210)
T ss_dssp             HTTCCS-EEEEEEETT---TSCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred             hccCCC-CCEEEEcCC---hhhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence             43346 999998632   3445 999999999999999999776544

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.61  E-value=4.1e-15  Score=124.94  Aligned_cols=116  Identities=22%  Similarity=0.245  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      .+.+++.+++.+...++.+|||+|||+|.++..++...+++|+|+|+|+.+++.|++++...++.++++++++|+.+. +
T Consensus       108 te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~  186 (284)
T 1nv8_A          108 TEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-F  186 (284)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-G
T ss_pred             HHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-c
Confidence            345566666655434667999999999999999998646799999999999999999999998877799999999873 3


Q ss_pred             CCCCe---eEEEec------------ccccccC--------hH-HHHHHHh-hcccCCcEEEEE
Q psy2408         153 DNDSF---DGGWFF------------ESIFHMN--------HS-AALNEAR-RVLKSGSILTLT  191 (298)
Q Consensus       153 ~~~~f---D~V~~~------------~~l~~~~--------~~-~~l~~~~-r~LkpgG~l~i~  191 (298)
                      + ++|   |+|+++            .+. |-+        +. .+++++. +.|+|||++++.
T Consensus       187 ~-~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e  248 (284)
T 1nv8_A          187 K-EKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  248 (284)
T ss_dssp             G-GGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             c-cccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence            3 578   999996            222 322        23 7899999 999999999984

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.61  E-value=3.8e-15  Score=128.73  Aligned_cols=116  Identities=18%  Similarity=0.237  Sum_probs=96.5

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ...+.+++.+...++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++++...++.  +.++.+|+...+  
T Consensus       183 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~--  258 (343)
T 2pjd_A          183 VGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV--  258 (343)
T ss_dssp             HHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC--
T ss_pred             HHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc--
Confidence            345666777765667899999999999999999864 469999999999999999999887764  677899987653  


Q ss_pred             CCCeeEEEeccccccc-----ChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         154 NDSFDGGWFFESIFHM-----NHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~-----~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +++||+|+++.++++.     .+. .+++++.++|+|||.+++....
T Consensus       259 ~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  305 (343)
T 2pjd_A          259 KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (343)
T ss_dssp             CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred             cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence            5799999999888752     233 9999999999999999997654

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.61  E-value=1.9e-15  Score=128.33  Aligned_cols=136  Identities=16%  Similarity=0.124  Sum_probs=100.6

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHh---cCCCCceEEEECCCCCCCC--CCCCeeEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKA---EGLLDKVNFLHGDALNLPF--DNDSFDGG  160 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~---~~~~~~i~~~~~d~~~~~~--~~~~fD~V  160 (298)
                      +++.+|||||||+|.++..+++.. ..+|+++|+|+.+++.|++.+..   ....++++++.+|+.+++.  ++++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            567899999999999999999864 46999999999999999998742   1223579999999877532  46899999


Q ss_pred             EecccccccCh-----HHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEE
Q psy2408         161 WFFESIFHMNH-----SAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI  235 (298)
Q Consensus       161 ~~~~~l~~~~~-----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  235 (298)
                      ++.....+.+.     ..+++++.++|+|||++++...+...  .                ......+.+.++++||..+
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~--~----------------~~~~~~~~~~l~~~GF~~v  235 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL--D----------------LELIEKMSRFIRETGFASV  235 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTT--C----------------HHHHHHHHHHHHHHTCSEE
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc--c----------------hHHHHHHHHHHHhCCCCcE
Confidence            99765544332     28899999999999999997543110  0                0123467788899999877


Q ss_pred             EEEeC
Q psy2408         236 KIDDI  240 (298)
Q Consensus       236 ~~~~~  240 (298)
                      .....
T Consensus       236 ~~~~~  240 (304)
T 3bwc_A          236 QYALM  240 (304)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            76543

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.60  E-value=1.8e-16  Score=130.26  Aligned_cols=121  Identities=13%  Similarity=0.140  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC
Q psy2408          71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL  148 (298)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~  148 (298)
                      .....+...++..   .++.+|||||||+|..+..+++..  +++|+++|+++.+++.|++++...++.++++++++|+.
T Consensus        46 ~~~~~~l~~l~~~---~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~  122 (242)
T 3r3h_A           46 PEQAQFMQMLIRL---TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPAL  122 (242)
T ss_dssp             HHHHHHHHHHHHH---HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHH
T ss_pred             HHHHHHHHHHHhh---cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            3444555555543   356799999999999999999864  57999999999999999999999998889999999987


Q ss_pred             CC-CCC-----CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         149 NL-PFD-----NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       149 ~~-~~~-----~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      +. +..     .++||+|++...   ..+. .+++++.++|+|||++++.+..+.+
T Consensus       123 ~~l~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g  175 (242)
T 3r3h_A          123 DTLHSLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFWDG  175 (242)
T ss_dssp             HHHHHHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred             HHHHHHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence            64 211     478999988654   3344 8999999999999999998877654

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.60  E-value=7.9e-15  Score=128.00  Aligned_cols=140  Identities=26%  Similarity=0.253  Sum_probs=107.7

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      ..+...++... ..++.+|||+|||+|.++..++.... ++++|+|+|+.+++.|++++...++.++++++++|+.++++
T Consensus       204 ~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~  282 (373)
T 3tm4_A          204 ASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ  282 (373)
T ss_dssp             HHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG
T ss_pred             HHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc
Confidence            34455555555 67889999999999999999998532 39999999999999999999999987789999999999887


Q ss_pred             CCCCeeEEEecccccc-------cChH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchH
Q psy2408         153 DNDSFDGGWFFESIFH-------MNHS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY  223 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~-------~~~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (298)
                      ++++||+|+++-.+..       +.+.  .+++++.++|  +|.+++....                         .+.+
T Consensus       283 ~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~-------------------------~~~~  335 (373)
T 3tm4_A          283 YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE-------------------------KKAI  335 (373)
T ss_dssp             TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESC-------------------------HHHH
T ss_pred             ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC-------------------------HHHH
Confidence            7789999999654322       2222  7888999988  5555554322                         2456


Q ss_pred             HHHHHhCCCcEEEEEeCC
Q psy2408         224 PDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       224 ~~~l~~~Gf~~~~~~~~~  241 (298)
                      .+.+++.||.+.....+.
T Consensus       336 ~~~~~~~G~~~~~~~~~~  353 (373)
T 3tm4_A          336 EEAIAENGFEIIHHRVIG  353 (373)
T ss_dssp             HHHHHHTTEEEEEEEEEE
T ss_pred             HHHHHHcCCEEEEEEEEE
Confidence            678888999887765543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.60  E-value=9.1e-16  Score=124.71  Aligned_cols=119  Identities=16%  Similarity=0.201  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      ...+...++..   .++.+|||+|||+|..+..+++..  +.+|+++|+|+.+++.+++++...++.++++++++|+.+.
T Consensus        52 ~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  128 (225)
T 3tr6_A           52 QAQLLALLVKL---MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDT  128 (225)
T ss_dssp             HHHHHHHHHHH---HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred             HHHHHHHHHHh---hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHH
Confidence            34444444443   366799999999999999999863  6799999999999999999999999887899999998653


Q ss_pred             -C-CC----CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         151 -P-FD----NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       151 -~-~~----~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                       + +.    .++||+|++...   ..+. .+++++.++|+|||++++.+..+.+
T Consensus       129 ~~~~~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g  179 (225)
T 3tr6_A          129 LAELIHAGQAWQYDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVLRRG  179 (225)
T ss_dssp             HHHHHTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSGGG
T ss_pred             HHHhhhccCCCCccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCcCC
Confidence             1 11    178999996543   3345 8999999999999999998776543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.60  E-value=3.9e-16  Score=130.20  Aligned_cols=153  Identities=12%  Similarity=0.068  Sum_probs=98.5

Q ss_pred             HHHHHhCCCC-CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEE-EECCCCCCC---C
Q psy2408          78 RIMINKTSIT-KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNF-LHGDALNLP---F  152 (298)
Q Consensus        78 ~~l~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~-~~~d~~~~~---~  152 (298)
                      ..+++.+.+. ++.+|||+|||||.++..+++....+|+|+|+|+.|++.+.+.-      .++.. ...++..++   +
T Consensus        74 ~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~ni~~l~~~~l  147 (291)
T 3hp7_A           74 EKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYNFRYAEPVDF  147 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC------TTEEEECSCCGGGCCGGGC
T ss_pred             HHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cccceecccCceecchhhC
Confidence            3455666554 57799999999999999998853359999999999998854321      12322 223443332   3


Q ss_pred             CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh--hcccCCCCcchHHHHHHhC
Q psy2408         153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK--NIHSNFILVEHYPDLLNKS  230 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~  230 (298)
                      +..+||+|++..+++++  ..+|.++.|+|+|||++++...+......  ..... ...  -...+....+++.++++++
T Consensus       148 ~~~~fD~v~~d~sf~sl--~~vL~e~~rvLkpGG~lv~lvkPqfe~~~--~~~~~-~G~vrd~~~~~~~~~~v~~~~~~~  222 (291)
T 3hp7_A          148 TEGLPSFASIDVSFISL--NLILPALAKILVDGGQVVALVKPQFEAGR--EQIGK-NGIVRESSIHEKVLETVTAFAVDY  222 (291)
T ss_dssp             TTCCCSEEEECCSSSCG--GGTHHHHHHHSCTTCEEEEEECGGGTSCG--GGCC--CCCCCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEEeeHhhH--HHHHHHHHHHcCcCCEEEEEECcccccCh--hhcCC-CCccCCHHHHHHHHHHHHHHHHHC
Confidence            44569999987766533  38999999999999999987322111110  00000 000  0001123567889999999


Q ss_pred             CCcEEEEEeCC
Q psy2408         231 GFELIKIDDIT  241 (298)
Q Consensus       231 Gf~~~~~~~~~  241 (298)
                      ||.+......+
T Consensus       223 Gf~v~~~~~sp  233 (291)
T 3hp7_A          223 GFSVKGLDFSP  233 (291)
T ss_dssp             TEEEEEEEECS
T ss_pred             CCEEEEEEECC
Confidence            99988876543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.60  E-value=4.9e-15  Score=120.53  Aligned_cols=112  Identities=17%  Similarity=0.195  Sum_probs=91.9

Q ss_pred             HHHHHhC--CCCCCCeEEEeCCCCCHHHHHHHHhcC------CeEEEEeCCHHHHHHHHHHHHhcCC----CCceEEEEC
Q psy2408          78 RIMINKT--SITKGQRFIDIGCGFGLSGIRLAKAKG------CRVDGITISKFQQESAMKTAKAEGL----LDKVNFLHG  145 (298)
Q Consensus        78 ~~l~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~------~~v~~vD~s~~~l~~a~~~~~~~~~----~~~i~~~~~  145 (298)
                      ..+++.+  .+.++.+|||+|||+|..+..+++..+      .+|+++|+++.+++.|++++...++    ..++.++.+
T Consensus        68 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  147 (227)
T 2pbf_A           68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK  147 (227)
T ss_dssp             HHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC
Confidence            3444444  457889999999999999999998644      5999999999999999999988763    357999999


Q ss_pred             CCCCCC----CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         146 DALNLP----FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       146 d~~~~~----~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      |+....    .+.++||+|++..+++++.     +++.++|+|||++++....
T Consensus       148 d~~~~~~~~~~~~~~fD~I~~~~~~~~~~-----~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          148 NIYQVNEEEKKELGLFDAIHVGASASELP-----EILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             CGGGCCHHHHHHHCCEEEEEECSBBSSCC-----HHHHHHEEEEEEEEEEEEE
T ss_pred             ChHhcccccCccCCCcCEEEECCchHHHH-----HHHHHhcCCCcEEEEEEcc
Confidence            998754    4457899999998888654     5788999999999997553

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.60  E-value=4.3e-15  Score=128.57  Aligned_cols=101  Identities=25%  Similarity=0.356  Sum_probs=85.8

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec--
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF--  163 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~--  163 (298)
                      .++.+|||||||+|.++..+++ .| .+|++||.|+ +++.|++.+..+++.++|.++.+|+.++.+| ++||+|++-  
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~-aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~  158 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQ-AGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWM  158 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHH-TTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCC
T ss_pred             cCCCEEEEeCCCccHHHHHHHH-hCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecc
Confidence            4788999999999999988887 55 4899999996 8999999999999999999999999998776 789999984  


Q ss_pred             -ccccccChH-HHHHHHhhcccCCcEEEE
Q psy2408         164 -ESIFHMNHS-AALNEARRVLKSGSILTL  190 (298)
Q Consensus       164 -~~l~~~~~~-~~l~~~~r~LkpgG~l~i  190 (298)
                       ..+.+-... .++....++|+|||.++-
T Consensus       159 ~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          159 GYGLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             BTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccccchhhhHHHHHHhhCCCCceECC
Confidence             334444444 888888899999998874

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.60  E-value=4e-15  Score=127.53  Aligned_cols=107  Identities=15%  Similarity=0.137  Sum_probs=87.5

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEECCCCCCCC----CCCCeeEEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD-KVNFLHGDALNLPF----DNDSFDGGW  161 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-~i~~~~~d~~~~~~----~~~~fD~V~  161 (298)
                      .++.+|||+|||+|.++..++. .+++|+++|+|+.+++.|++++...++.+ ++.++++|+.++..    ..++||+|+
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~-~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAA-AGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCCcEEEcccccCHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            4678999999999999999998 56799999999999999999999888865 59999999877521    146899999


Q ss_pred             eccc----------ccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         162 FFES----------IFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       162 ~~~~----------l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +.-.          ..+..+. .+++++.++|+|||.+++....
T Consensus       231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence            8432          2223345 8999999999999998776544

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.59  E-value=5.2e-15  Score=120.45  Aligned_cols=113  Identities=15%  Similarity=0.190  Sum_probs=91.9

Q ss_pred             HHHHHHHhC--CCCCCCeEEEeCCCCCHHHHHHHHhcC-------CeEEEEeCCHHHHHHHHHHHHhcCC----CCceEE
Q psy2408          76 LSRIMINKT--SITKGQRFIDIGCGFGLSGIRLAKAKG-------CRVDGITISKFQQESAMKTAKAEGL----LDKVNF  142 (298)
Q Consensus        76 ~~~~l~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~-------~~v~~vD~s~~~l~~a~~~~~~~~~----~~~i~~  142 (298)
                      +...+++.+  .+.++.+|||+|||+|..+..+++..+       .+|+++|+++.+++.+++++...+.    ..++.+
T Consensus        70 ~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  149 (227)
T 1r18_A           70 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI  149 (227)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEE
Confidence            344555555  467889999999999999999998644       5999999999999999999876541    246999


Q ss_pred             EECCCCCCCCCC-CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         143 LHGDALNLPFDN-DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       143 ~~~d~~~~~~~~-~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +++|+.. +++. ++||+|++..+++++.     +++.++|+|||++++....
T Consensus       150 ~~~d~~~-~~~~~~~fD~I~~~~~~~~~~-----~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          150 VEGDGRK-GYPPNAPYNAIHVGAAAPDTP-----TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             EESCGGG-CCGGGCSEEEEEECSCBSSCC-----HHHHHTEEEEEEEEEEESC
T ss_pred             EECCccc-CCCcCCCccEEEECCchHHHH-----HHHHHHhcCCCEEEEEEec
Confidence            9999987 4444 7899999999988766     5788999999999997654

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.59  E-value=1.8e-14  Score=119.63  Aligned_cols=135  Identities=13%  Similarity=0.147  Sum_probs=105.9

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCe
Q psy2408          78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSF  157 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  157 (298)
                      ..+.+..  .+|.+|||+|||+|.++..++....++|+++|+|+.+++.++++++.+++.+++.++++|+.+++ +.+.|
T Consensus       117 ~ri~~~~--~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~  193 (278)
T 3k6r_A          117 VRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIA  193 (278)
T ss_dssp             HHHHHHC--CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCE
T ss_pred             HHHHHhc--CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCC
Confidence            3444554  68999999999999999999985457999999999999999999999999999999999999876 35789


Q ss_pred             eEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEE
Q psy2408         158 DGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI  235 (298)
Q Consensus       158 D~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  235 (298)
                      |.|++...    +.. .++..+.++|+|||++.+.+........                -...+.+...+++.|+.+.
T Consensus       194 D~Vi~~~p----~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~----------------~~~~e~i~~~~~~~g~~v~  252 (278)
T 3k6r_A          194 DRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMP----------------REPFETFKRITKEYGYDVE  252 (278)
T ss_dssp             EEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTT----------------TTTHHHHHHHHHHTTCEEE
T ss_pred             CEEEECCC----CcHHHHHHHHHHHcCCCCEEEEEeeecccccc----------------hhHHHHHHHHHHHcCCcEE
Confidence            99986532    223 7888899999999999887655332221                0123456677888999764

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.58  E-value=2.2e-15  Score=124.09  Aligned_cols=120  Identities=17%  Similarity=0.224  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC
Q psy2408          71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL  148 (298)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~  148 (298)
                      .....+...++..   .++.+|||||||+|..+..+++..  +.+|+++|+|+.+++.|++++...++.++++++.+|+.
T Consensus        65 ~~~~~ll~~l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~  141 (247)
T 1sui_A           65 ADEGQFLSMLLKL---INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPAL  141 (247)
T ss_dssp             HHHHHHHHHHHHH---TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred             HHHHHHHHHHHHh---hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHH
Confidence            3444555555544   356799999999999999999874  68999999999999999999999888778999999987


Q ss_pred             CC-C-C-----CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         149 NL-P-F-----DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       149 ~~-~-~-----~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      +. + +     +.++||+|++...   ..+. .+++++.++|+|||++++.+..+.
T Consensus       142 ~~l~~l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~~  194 (247)
T 1sui_A          142 PVLDEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNTLWN  194 (247)
T ss_dssp             HHHHHHHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEECTTGG
T ss_pred             HHHHHHHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecCCcC
Confidence            63 2 1     1478999998644   2345 999999999999999999776543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.57  E-value=5.6e-15  Score=121.22  Aligned_cols=107  Identities=23%  Similarity=0.220  Sum_probs=89.5

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-C------------
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-P------------  151 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~------------  151 (298)
                      .++.+|||+|||+|..+..+++..  +.+|+++|+++.+++.|++++...++.+++.++++|+.+. +            
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  138 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA  138 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence            467899999999999999999874  5799999999999999999999888876799999997652 1            


Q ss_pred             --CCC--CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         152 --FDN--DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       152 --~~~--~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                        +++  ++||+|++...   ..+. .+++++.++|+|||++++.+..+.
T Consensus       139 ~~f~~~~~~fD~I~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  185 (239)
T 2hnk_A          139 SDFAFGPSSIDLFFLDAD---KENYPNYYPLILKLLKPGGLLIADNVLWD  185 (239)
T ss_dssp             TTTCCSTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred             ccccCCCCCcCEEEEeCC---HHHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence              222  78999998754   2344 899999999999999999876544

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.57  E-value=6.9e-15  Score=123.64  Aligned_cols=113  Identities=19%  Similarity=0.191  Sum_probs=90.1

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+.+.+++.+.+.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...+..++++++++|+.+++++
T Consensus        14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~   92 (285)
T 1zq9_A           14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP   92 (285)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence            456788888888888999999999999999999985 6799999999999999999987666556799999999987764


Q ss_pred             CCCeeEEEecccccccChH--HHH--------------HHH--hhcccCCcEEE
Q psy2408         154 NDSFDGGWFFESIFHMNHS--AAL--------------NEA--RRVLKSGSILT  189 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~--~~l--------------~~~--~r~LkpgG~l~  189 (298)
                        +||+|+++...+...+.  .++              +++  +++++|||.++
T Consensus        93 --~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           93 --FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             --CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             --hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence              79999986544332222  333              233  36899999763

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.56  E-value=6.3e-15  Score=120.36  Aligned_cols=119  Identities=15%  Similarity=0.190  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      ...+...++..   .++.+|||+|||+|..+..+++..  +.+|+++|+|+.+++.|++.+...++.++++++.+|+.+.
T Consensus        60 ~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~  136 (232)
T 3cbg_A           60 QAQFLGLLISL---TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT  136 (232)
T ss_dssp             HHHHHHHHHHH---HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred             HHHHHHHHHHh---cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence            34444444443   356799999999999999999864  5799999999999999999999888877899999997542


Q ss_pred             ----CCCC--CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         151 ----PFDN--DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       151 ----~~~~--~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                          +..+  ++||+|++...   ..+. .+++++.++|+|||++++.+..+.+
T Consensus       137 l~~l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g  187 (232)
T 3cbg_A          137 LEQLTQGKPLPEFDLIFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVLWHG  187 (232)
T ss_dssp             HHHHHTSSSCCCEEEEEECSC---GGGHHHHHHHHHHTEEEEEEEEEECTTGGG
T ss_pred             HHHHHhcCCCCCcCEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCCcCC
Confidence                2223  78999997654   2344 8999999999999999998776543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.56  E-value=2.5e-14  Score=117.84  Aligned_cols=105  Identities=30%  Similarity=0.413  Sum_probs=84.4

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc--------CCCCceEEEECCCCC-CC--CCC
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAE--------GLLDKVNFLHGDALN-LP--FDN  154 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~--------~~~~~i~~~~~d~~~-~~--~~~  154 (298)
                      .++.+|||||||+|.++..+++.. +..|+|+|+|+.+++.+++++...        ++ .++.++++|+.+ ++  ++.
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~~  126 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFEK  126 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSCT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhccc
Confidence            467899999999999999999864 468999999999999999988765        55 479999999987 44  667


Q ss_pred             CCeeEEEecccccccCh---------HHHHHHHhhcccCCcEEEEEe
Q psy2408         155 DSFDGGWFFESIFHMNH---------SAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~---------~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +++|.|++...-.+...         ..+++++.++|+|||.|++..
T Consensus       127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence            89999985432211110         269999999999999999954

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.56  E-value=6.6e-14  Score=125.12  Aligned_cols=119  Identities=19%  Similarity=0.206  Sum_probs=96.5

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--C
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-G-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--F  152 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~  152 (298)
                      ...+...+.+.++.+|||+|||+|..+..+++.. + .+|+++|+|+.+++.+++++...++. ++.++++|+..++  +
T Consensus       248 s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~  326 (450)
T 2yxl_A          248 SAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEII  326 (450)
T ss_dssp             HHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSSS
T ss_pred             hHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchhh
Confidence            3444455567889999999999999999999864 3 69999999999999999999988874 6999999998875  5


Q ss_pred             CCCCeeEEEe------cccccccCh-----------------HHHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         153 DNDSFDGGWF------FESIFHMNH-----------------SAALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       153 ~~~~fD~V~~------~~~l~~~~~-----------------~~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      ++++||+|++      ..++.+.++                 ..++.++.++|||||++++++....
T Consensus       327 ~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~  393 (450)
T 2yxl_A          327 GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF  393 (450)
T ss_dssp             CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            5578999996      334443333                 1689999999999999999877644

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.56  E-value=1.1e-15  Score=124.51  Aligned_cols=151  Identities=12%  Similarity=0.078  Sum_probs=91.6

Q ss_pred             HHHHHhCCCC-CCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCC--CceEEEE-CCCCCCCC
Q psy2408          78 RIMINKTSIT-KGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLL--DKVNFLH-GDALNLPF  152 (298)
Q Consensus        78 ~~l~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~--~~i~~~~-~d~~~~~~  152 (298)
                      ..+++.+.+. ++.+|||||||+|.++..+++. + .+|+|+|+|+.|++.++++.......  .++.+.. .|+....+
T Consensus        26 ~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (232)
T 3opn_A           26 EKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRP  104 (232)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCC
T ss_pred             HHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCC
Confidence            3445555544 4679999999999999999985 5 49999999999999877653221100  0122222 22221111


Q ss_pred             CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhh----cccCCCCcchHHHHHH
Q psy2408         153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKN----IHSNFILVEHYPDLLN  228 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~  228 (298)
                      ...+||+++++     +  ..+++++.|+|+|||++++.......     ..........    ...+..+.+++.++++
T Consensus       105 d~~~~D~v~~~-----l--~~~l~~i~rvLkpgG~lv~~~~p~~e-----~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~  172 (232)
T 3opn_A          105 SFTSIDVSFIS-----L--DLILPPLYEILEKNGEVAALIKPQFE-----AGREQVGKNGIIRDPKVHQMTIEKVLKTAT  172 (232)
T ss_dssp             SEEEECCSSSC-----G--GGTHHHHHHHSCTTCEEEEEECHHHH-----SCHHHHC-CCCCCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEhhh-----H--HHHHHHHHHhccCCCEEEEEECcccc-----cCHHHhCcCCeecCcchhHHHHHHHHHHHH
Confidence            22345544432     2  37999999999999999986411000     0001110000    0112236788999999


Q ss_pred             hCCCcEEEEEeCC
Q psy2408         229 KSGFELIKIDDIT  241 (298)
Q Consensus       229 ~~Gf~~~~~~~~~  241 (298)
                      ++||+++.....+
T Consensus       173 ~aGf~v~~~~~~p  185 (232)
T 3opn_A          173 QLGFSVKGLTFSP  185 (232)
T ss_dssp             HHTEEEEEEEECS
T ss_pred             HCCCEEEEEEEcc
Confidence            9999998876543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.56  E-value=8.7e-15  Score=126.01  Aligned_cols=107  Identities=16%  Similarity=0.182  Sum_probs=84.8

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCC------CCHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCG------FGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA  147 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG------~G~~~~~l~~~--~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~  147 (298)
                      ..+.++..+. .++.+|||||||      +|..+..+++.  .+++|+|+|+|+.|..          ...+++++++|+
T Consensus       205 ~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~----------~~~rI~fv~GDa  273 (419)
T 3sso_A          205 HYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV----------DELRIRTIQGDQ  273 (419)
T ss_dssp             HHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG----------CBTTEEEEECCT
T ss_pred             HHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh----------cCCCcEEEEecc
Confidence            3445566554 356799999999      77777777765  3789999999998721          125799999999


Q ss_pred             CCCCCC------CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         148 LNLPFD------NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       148 ~~~~~~------~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .++++.      +++||+|++.. .+++.+. .+|++++++|||||++++.+..
T Consensus       274 ~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          274 NDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             TCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             cccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            998766      68999999864 4566666 9999999999999999998766

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.55  E-value=3.5e-15  Score=122.08  Aligned_cols=107  Identities=15%  Similarity=0.200  Sum_probs=83.5

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-----cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-----KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN  149 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~  149 (298)
                      .....++...   ++.+|||||||+|..+..+++.     .+++|+++|+|+.+++.|+      ++..+++++++|+.+
T Consensus        71 ~~l~~~l~~~---~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~  141 (236)
T 2bm8_A           71 AVYHDMLWEL---RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSD  141 (236)
T ss_dssp             HHHHHHHHHH---CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSC
T ss_pred             HHHHHHHHhc---CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchh
Confidence            3344444443   4579999999999999999985     2689999999999998886      123579999999988


Q ss_pred             C---CCCC-CCeeEEEecccccccChH-HHHHHHhh-cccCCcEEEEEeC
Q psy2408         150 L---PFDN-DSFDGGWFFESIFHMNHS-AALNEARR-VLKSGSILTLTDL  193 (298)
Q Consensus       150 ~---~~~~-~~fD~V~~~~~l~~~~~~-~~l~~~~r-~LkpgG~l~i~~~  193 (298)
                      .   +... .+||+|++...  |. +. .++.++.+ +|+|||++++.+.
T Consensus       142 ~~~l~~~~~~~fD~I~~d~~--~~-~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          142 LTTFEHLREMAHPLIFIDNA--HA-NTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             SGGGGGGSSSCSSEEEEESS--CS-SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             HHHHHhhccCCCCEEEECCc--hH-hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            4   4333 47999997654  33 55 99999997 9999999999765

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.55  E-value=3.3e-14  Score=118.95  Aligned_cols=116  Identities=13%  Similarity=0.062  Sum_probs=93.5

Q ss_pred             HHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC----CC
Q psy2408          81 INKTSITKGQRFIDIGCGFGLSGIRLAKAK-G-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF----DN  154 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~  154 (298)
                      ...+.+.++.+|||+|||+|..+..+++.. + .+|+++|+|+.+++.+++++...++. ++.++++|+.+++.    +.
T Consensus        76 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~  154 (274)
T 3ajd_A           76 PIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNE  154 (274)
T ss_dssp             HHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTT
T ss_pred             HHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhcc
Confidence            344466789999999999999999999863 4 79999999999999999999988875 79999999987643    25


Q ss_pred             CCeeEEEeccc------cc------------ccChH-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         155 DSFDGGWFFES------IF------------HMNHS-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       155 ~~fD~V~~~~~------l~------------~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      ++||+|++...      +.            ..... .+++++.++|||||++++++.....
T Consensus       155 ~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~  216 (274)
T 3ajd_A          155 IFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEV  216 (274)
T ss_dssp             CCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCT
T ss_pred             ccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCh
Confidence            78999998622      21            11344 8999999999999999998766433

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.55  E-value=1.4e-14  Score=112.87  Aligned_cols=104  Identities=15%  Similarity=0.114  Sum_probs=85.1

Q ss_pred             HHHHhCC-CCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----
Q psy2408          79 IMINKTS-ITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----  151 (298)
Q Consensus        79 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----  151 (298)
                      .+++.+. +.++.+|||+|||+|..+..+++..  +.+++++|+|+ +++.           .++.++++|+.+.+    
T Consensus        12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~   79 (180)
T 1ej0_A           12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKA   79 (180)
T ss_dssp             HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHH
T ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhh
Confidence            3344443 5788899999999999999999874  47999999998 6532           36899999998875    


Q ss_pred             ----CCCCCeeEEEecccccccChH------------HHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 ----FDNDSFDGGWFFESIFHMNHS------------AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 ----~~~~~fD~V~~~~~l~~~~~~------------~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                          +++++||+|++..++++....            .+++++.++|+|||.+++..+.
T Consensus        80 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  138 (180)
T 1ej0_A           80 LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ  138 (180)
T ss_dssp             HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             hhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence                667899999998888776542            7899999999999999997765

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.54  E-value=8.3e-15  Score=119.34  Aligned_cols=107  Identities=19%  Similarity=0.182  Sum_probs=89.3

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCC----CCee
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDN----DSFD  158 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~----~~fD  158 (298)
                      .++.+|||+|||+|..+..+++..  +.+|+++|+++.+++.+++.+...++..+++++++|+.+.  .++.    ++||
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D  147 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  147 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence            467799999999999999999863  5799999999999999999999988877899999998653  1111    6899


Q ss_pred             EEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         159 GGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       159 ~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      +|++...   .... .+++++.++|+|||.+++.+..+.
T Consensus       148 ~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  183 (229)
T 2avd_A          148 VAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVLWR  183 (229)
T ss_dssp             EEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred             EEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCCcC
Confidence            9998654   2344 899999999999999999876543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.54  E-value=3.9e-14  Score=118.34  Aligned_cols=105  Identities=17%  Similarity=0.097  Sum_probs=90.8

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecc
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE  164 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~  164 (298)
                      +.++.+|||+|||+|.++..+++.. +++|+++|+|+.+++.|++++...++. ++.++++|+.+++. .++||+|++..
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~-~~~~D~Vi~d~  194 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVEL-KDVADRVIMGY  194 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCC-TTCEEEEEECC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCc-cCCceEEEECC
Confidence            5688999999999999999999964 469999999999999999999988875 58899999988743 57899999875


Q ss_pred             cccccChH-HHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         165 SIFHMNHS-AALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       165 ~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      ..    .. .++.++.+.|+|||.+++.+....
T Consensus       195 p~----~~~~~l~~~~~~LkpgG~l~~s~~~~~  223 (272)
T 3a27_A          195 VH----KTHKFLDKTFEFLKDRGVIHYHETVAE  223 (272)
T ss_dssp             CS----SGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred             cc----cHHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence            53    44 899999999999999999887643

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.54  E-value=1.7e-13  Score=109.73  Aligned_cols=129  Identities=12%  Similarity=0.050  Sum_probs=98.4

Q ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecc
Q psy2408          85 SITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE  164 (298)
Q Consensus        85 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~  164 (298)
                      ...++.+|||+|||+|.++..+++....+++|+|+|+.+++.+++++...++  ++.++++|+.+++   ++||+|+++.
T Consensus        46 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---~~~D~v~~~~  120 (207)
T 1wy7_A           46 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN---SRVDIVIMNP  120 (207)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC---CCCSEEEECC
T ss_pred             CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC---CCCCEEEEcC
Confidence            4557889999999999999999985334799999999999999999887776  6999999998874   4899999988


Q ss_pred             cccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCC
Q psy2408         165 SIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       165 ~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                      .++.....   .+++++.+++  |+ +++.....      ..               +.+.+.+.+++.||.+..+....
T Consensus       121 p~~~~~~~~~~~~l~~~~~~l--~~-~~~~~~~~------~~---------------~~~~~~~~l~~~g~~~~~~~~~~  176 (207)
T 1wy7_A          121 PFGSQRKHADRPFLLKAFEIS--DV-VYSIHLAK------PE---------------VRRFIEKFSWEHGFVVTHRLTTK  176 (207)
T ss_dssp             CCSSSSTTTTHHHHHHHHHHC--SE-EEEEEECC------HH---------------HHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CCccccCCchHHHHHHHHHhc--Cc-EEEEEeCC------cC---------------CHHHHHHHHHHCCCeEEEEEEEe
Confidence            87766532   8899999988  44 44443210      01               12245677888999877665543


Q ss_pred             C
Q psy2408         242 S  242 (298)
Q Consensus       242 ~  242 (298)
                      .
T Consensus       177 ~  177 (207)
T 1wy7_A          177 I  177 (207)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.53  E-value=1.5e-14  Score=118.44  Aligned_cols=119  Identities=17%  Similarity=0.241  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN  149 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~  149 (298)
                      ....+...++..   .++.+|||||||+|..+..+++..  +.+++++|+|+.+++.|++++...++.++++++++|+.+
T Consensus        57 ~~~~~l~~l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~  133 (237)
T 3c3y_A           57 LAGQLMSFVLKL---VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAML  133 (237)
T ss_dssp             HHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             HHHHHHHHHHHh---hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            344455555544   356799999999999999999873  679999999999999999999998887789999999876


Q ss_pred             C-C-C-----CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         150 L-P-F-----DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       150 ~-~-~-----~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      . + +     +.++||+|++...   ..+. .+++.+.++|+|||.+++.+..+.
T Consensus       134 ~l~~l~~~~~~~~~fD~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~~~~~  185 (237)
T 3c3y_A          134 ALDNLLQGQESEGSYDFGFVDAD---KPNYIKYHERLMKLVKVGGIVAYDNTLWG  185 (237)
T ss_dssp             HHHHHHHSTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECTTGG
T ss_pred             HHHHHHhccCCCCCcCEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEecCCcC
Confidence            3 2 1     2478999997643   2234 899999999999999998766543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.53  E-value=1e-13  Score=112.01  Aligned_cols=147  Identities=9%  Similarity=0.078  Sum_probs=109.6

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      +.+...++..+  .+..+|||||||+|.++..++.. ..++|+++|+++.+++.+++++...|+.  ..+.+.|...-+ 
T Consensus       120 D~fY~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~-  194 (281)
T 3lcv_B          120 DEFYRELFRHL--PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDR-  194 (281)
T ss_dssp             HHHHHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSC-
T ss_pred             HHHHHHHHhcc--CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccC-
Confidence            34444555555  44679999999999999999886 4679999999999999999999988875  788999987754 


Q ss_pred             CCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHh
Q psy2408         153 DNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNK  229 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  229 (298)
                      +.+.||+|++.-+++++.+.   ..+ ++...|+|+|.++-.+.-.....+ .. ....+          ...|.+.+.+
T Consensus       195 p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs-~g-m~~~Y----------~~~~e~~~~~  261 (281)
T 3lcv_B          195 LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRS-KG-MFQNY----------SQSFESQARE  261 (281)
T ss_dssp             CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC--------C-HHHHH----------HHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCC-cc-hhhHH----------HHHHHHHHHh
Confidence            45889999999999999888   555 999999999988776552111111 11 11111          2468888888


Q ss_pred             CCCcEEEEE
Q psy2408         230 SGFELIKID  238 (298)
Q Consensus       230 ~Gf~~~~~~  238 (298)
                      .|+.+...+
T Consensus       262 ~g~~~~~~~  270 (281)
T 3lcv_B          262 RSCRIQRLE  270 (281)
T ss_dssp             HTCCEEEEE
T ss_pred             cCCceeeee
Confidence            999655543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.53  E-value=5e-14  Score=112.32  Aligned_cols=97  Identities=13%  Similarity=0.159  Sum_probs=77.9

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----------
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAK---GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----------  151 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------  151 (298)
                      +.++.+|||+|||+|.++..+++..   +.+|+|+|+|+..           .. .++.++++|+.+.+           
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~   87 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYID   87 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC-------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhccccccc
Confidence            4678899999999999999999875   4799999999831           12 46899999998875           


Q ss_pred             --------------CCCCCeeEEEecccccccC----hH--------HHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 --------------FDNDSFDGGWFFESIFHMN----HS--------AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 --------------~~~~~fD~V~~~~~l~~~~----~~--------~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                                    +++++||+|++..++++..    +.        .+++++.++|+|||.+++..+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (201)
T 2plw_A           88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL  156 (201)
T ss_dssp             ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence                          4567999999987776642    22        2788999999999999986543

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.51  E-value=3.2e-13  Score=117.89  Aligned_cols=102  Identities=17%  Similarity=0.067  Sum_probs=84.8

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-CCC-CCCCeeEEEec
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-LPF-DNDSFDGGWFF  163 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~~fD~V~~~  163 (298)
                      .++.+|||+| |+|.++..++... ..+|+++|+|+.+++.|++++...++. +++++++|+.+ +|. .+++||+|+++
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~~  248 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFITD  248 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEEC
Confidence            4678999999 9999999998853 369999999999999999999988876 79999999988 653 34689999997


Q ss_pred             ccccccChHHHHHHHhhcccCCcEEEE
Q psy2408         164 ESIFHMNHSAALNEARRVLKSGSILTL  190 (298)
Q Consensus       164 ~~l~~~~~~~~l~~~~r~LkpgG~l~i  190 (298)
                      ..+.......+++++.++|+|||++++
T Consensus       249 ~p~~~~~~~~~l~~~~~~LkpgG~~~~  275 (373)
T 2qm3_A          249 PPETLEAIRAFVGRGIATLKGPRCAGY  275 (373)
T ss_dssp             CCSSHHHHHHHHHHHHHTBCSTTCEEE
T ss_pred             CCCchHHHHHHHHHHHHHcccCCeEEE
Confidence            655433222999999999999995533

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.51  E-value=2.8e-13  Score=107.88  Aligned_cols=89  Identities=19%  Similarity=0.184  Sum_probs=72.5

Q ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecc
Q psy2408          85 SITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE  164 (298)
Q Consensus        85 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~  164 (298)
                      ...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.+++++.      +++++++|+.+++   ++||+|+++.
T Consensus        48 ~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~---~~~D~v~~~~  118 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS---GKYDTWIMNP  118 (200)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC---CCEEEEEECC
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC---CCeeEEEECC
Confidence            445788999999999999999998522379999999999999998864      5899999998864   6899999999


Q ss_pred             cccccChH---HHHHHHhhcc
Q psy2408         165 SIFHMNHS---AALNEARRVL  182 (298)
Q Consensus       165 ~l~~~~~~---~~l~~~~r~L  182 (298)
                      .+++..+.   .+++++.+++
T Consensus       119 p~~~~~~~~~~~~l~~~~~~~  139 (200)
T 1ne2_A          119 PFGSVVKHSDRAFIDKAFETS  139 (200)
T ss_dssp             CC-------CHHHHHHHHHHE
T ss_pred             CchhccCchhHHHHHHHHHhc
Confidence            99888754   8999999998

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.50  E-value=2.3e-13  Score=121.88  Aligned_cols=116  Identities=14%  Similarity=0.090  Sum_probs=93.3

Q ss_pred             HhCCCC--CCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC-CCCC
Q psy2408          82 NKTSIT--KGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF-DNDS  156 (298)
Q Consensus        82 ~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~  156 (298)
                      ..+.+.  ++.+|||+|||+|..+..+++..  +.+|+++|+|+.+++.+++++...++. ++.++++|+..++. ..++
T Consensus       109 ~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~~  187 (479)
T 2frx_A          109 AALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPEM  187 (479)
T ss_dssp             HHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTTC
T ss_pred             HHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhcccc
Confidence            344555  89999999999999999999874  369999999999999999999988875 69999999988642 3578


Q ss_pred             eeEEEec------ccccccCh----------------H-HHHHHHhhcccCCcEEEEEeCCCCCC
Q psy2408         157 FDGGWFF------ESIFHMNH----------------S-AALNEARRVLKSGSILTLTDLPLLSV  198 (298)
Q Consensus       157 fD~V~~~------~~l~~~~~----------------~-~~l~~~~r~LkpgG~l~i~~~~~~~~  198 (298)
                      ||+|++.      .++...++                . .+|.++.++|||||+|++++......
T Consensus       188 fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~  252 (479)
T 2frx_A          188 FDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQE  252 (479)
T ss_dssp             EEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSST
T ss_pred             CCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcc
Confidence            9999972      23332221                2 68999999999999999987765543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.48  E-value=9.1e-14  Score=117.19  Aligned_cols=105  Identities=13%  Similarity=-0.007  Sum_probs=84.4

Q ss_pred             CCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCCCeeEEEeccc
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDNDSFDGGWFFES  165 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~~~~~  165 (298)
                      ..+|||||||+|.++..+++. .+.++++||+++.+++.|++.+.... ..+++++++|+.++  .+++++||+|++...
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~  168 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVF  168 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCS
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCC
Confidence            359999999999999999985 47799999999999999999875432 35799999998765  345689999998543


Q ss_pred             ccc-----cChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         166 IFH-----MNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       166 l~~-----~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ...     +....++++++++|+|||++++....
T Consensus       169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            221     22238999999999999999987653

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.48  E-value=1.9e-13  Score=119.61  Aligned_cols=138  Identities=7%  Similarity=0.058  Sum_probs=100.8

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEECCCCCC-C-C--CCCCeeEEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD-KVNFLHGDALNL-P-F--DNDSFDGGW  161 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-~i~~~~~d~~~~-~-~--~~~~fD~V~  161 (298)
                      .++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++...++.+ +++++++|+.+. + .  ..++||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            5778999999999999999998422489999999999999999999998865 899999998763 2 1  245899999


Q ss_pred             ecccc-----cccCh----H-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCC
Q psy2408         162 FFESI-----FHMNH----S-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG  231 (298)
Q Consensus       162 ~~~~l-----~~~~~----~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  231 (298)
                      +.-..     ....+    . .+++.+.++|+|||.+++.+.....  . ...   +           .+.+...+..+|
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~--~-~~~---~-----------~~~i~~~~~~~g  353 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM--T-VSQ---F-----------KKQIEKGFGKQK  353 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS--C-HHH---H-----------HHHHHHHHTTCC
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC--C-HHH---H-----------HHHHHHHHHHcC
Confidence            84332     12222    2 6788889999999999998655321  1 111   1           124456677888


Q ss_pred             CcEEEEEeCC
Q psy2408         232 FELIKIDDIT  241 (298)
Q Consensus       232 f~~~~~~~~~  241 (298)
                      ..++.....+
T Consensus       354 ~~~~~~~~~~  363 (385)
T 2b78_A          354 HTYLDLQQLP  363 (385)
T ss_dssp             CEEEEEECCC
T ss_pred             CcEEEeCCCC
Confidence            8866555443

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.47  E-value=5.1e-13  Score=107.00  Aligned_cols=101  Identities=16%  Similarity=0.157  Sum_probs=85.6

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      .++.+|||||||+|.++..+.  .+.+|+++|+++.+++.+++.+...+.  +..+...|....+++ ++||+|++.-++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~~-~~~DvvLllk~l  178 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPPA-EAGDLALIFKLL  178 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCCC-CBCSEEEEESCH
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCCC-CCcchHHHHHHH
Confidence            456799999999999999887  577999999999999999999888774  588999999887654 699999999999


Q ss_pred             cccChH--HHHHHHhhcccCCcEEEEEe
Q psy2408         167 FHMNHS--AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       167 ~~~~~~--~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +++.+.  ...-++...|+++|.++-..
T Consensus       179 h~LE~q~~~~~~~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          179 PLLEREQAGSAMALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             HHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred             HHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence            998777  34448888999998766654

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.46  E-value=2.1e-13  Score=121.10  Aligned_cols=116  Identities=14%  Similarity=0.092  Sum_probs=92.3

Q ss_pred             HHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-CCCCC
Q psy2408          80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-FDNDS  156 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~  156 (298)
                      +...+.+.++.+|||+|||+|..+..+++..  ..+|+++|+|+.+++.+++++...++.  +.++++|+..++ ...++
T Consensus        93 ~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~  170 (464)
T 3m6w_A           93 VGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTY  170 (464)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSC
T ss_pred             HHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhcccc
Confidence            3444566789999999999999999999864  369999999999999999999999885  899999987764 23578


Q ss_pred             eeEEEec------ccccccCh----------------H-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         157 FDGGWFF------ESIFHMNH----------------S-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       157 fD~V~~~------~~l~~~~~----------------~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      ||+|++.      .++...++                . .+|.++.++|||||+|+.++.....
T Consensus       171 FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~  234 (464)
T 3m6w_A          171 FHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP  234 (464)
T ss_dssp             EEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred             CCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch
Confidence            9999952      22222111                2 7899999999999999998766443

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.46  E-value=1.3e-13  Score=118.07  Aligned_cols=107  Identities=19%  Similarity=0.195  Sum_probs=84.5

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc--CC-CCceEEEECCCCCC--CCCCCCeeE
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAE--GL-LDKVNFLHGDALNL--PFDNDSFDG  159 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~--~~-~~~i~~~~~d~~~~--~~~~~~fD~  159 (298)
                      ...+.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|++++...  ++ .++++++++|+.+.  ..++++||+
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence            3466899999999999999999864 479999999999999999987642  33 35799999998764  234578999


Q ss_pred             EEecccc--cccC---hHHHHHHHhhcccCCcEEEEEe
Q psy2408         160 GWFFESI--FHMN---HSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       160 V~~~~~l--~~~~---~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      |++....  ....   ...+++++.++|+|||++++..
T Consensus       198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            9985432  1111   1289999999999999999963

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.46  E-value=1.1e-13  Score=117.19  Aligned_cols=108  Identities=18%  Similarity=0.062  Sum_probs=84.1

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHh--cCC-CCceEEEECCCCCC-CCCCCCeeEEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKA--EGL-LDKVNFLHGDALNL-PFDNDSFDGGW  161 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~fD~V~  161 (298)
                      ..+.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++.+..  .++ .++++++.+|+.+. +..+++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            456899999999999999999864 47999999999999999998765  233 46799999998663 33457899999


Q ss_pred             ecccccccCh----H-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         162 FFESIFHMNH----S-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       162 ~~~~l~~~~~----~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +.......+.    . .+++++.++|+|||.+++...+
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  211 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  211 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence            8544322211    2 7899999999999999987643

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.46  E-value=4.6e-13  Score=119.04  Aligned_cols=122  Identities=16%  Similarity=0.199  Sum_probs=97.7

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-  151 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-  151 (298)
                      +.....+...+.+.++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.+++++...++  ++.++++|+..++ 
T Consensus       232 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~  309 (429)
T 1sqg_A          232 DASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQ  309 (429)
T ss_dssp             CHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHH
T ss_pred             CHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchh
Confidence            3444455556667889999999999999999999865 37999999999999999999998886  3789999998875 


Q ss_pred             -CCCCCeeEEEe------cccccccCh----------------H-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         152 -FDNDSFDGGWF------FESIFHMNH----------------S-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       152 -~~~~~fD~V~~------~~~l~~~~~----------------~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                       +++++||+|++      ..++.+.++                . .++.++.++|||||++++++.....
T Consensus       310 ~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~  379 (429)
T 1sqg_A          310 WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP  379 (429)
T ss_dssp             HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred             hcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence             45578999996      234444333                1 6799999999999999998766543

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.45  E-value=4.5e-13  Score=113.33  Aligned_cols=108  Identities=21%  Similarity=0.263  Sum_probs=82.8

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+.+.+++.+.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ ++++++++|+.++++ 
T Consensus        28 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~-  104 (299)
T 2h1r_A           28 PGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF-  104 (299)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC-
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc-
Confidence            456777778888888999999999999999999984 77999999999999999999887666 579999999998865 


Q ss_pred             CCCeeEEEecccccccChH---HHH---------------HHHhhcccCCc
Q psy2408         154 NDSFDGGWFFESIFHMNHS---AAL---------------NEARRVLKSGS  186 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~---~~l---------------~~~~r~LkpgG  186 (298)
                       ++||+|+++...+ +..+   .++               ..+.|+++++|
T Consensus       105 -~~~D~Vv~n~py~-~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G  153 (299)
T 2h1r_A          105 -PKFDVCTANIPYK-ISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG  153 (299)
T ss_dssp             -CCCSEEEEECCGG-GHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred             -ccCCEEEEcCCcc-cccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence             4899999865543 3333   444               33567777766

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.45  E-value=1.5e-13  Score=121.79  Aligned_cols=117  Identities=13%  Similarity=0.045  Sum_probs=92.6

Q ss_pred             HHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-CCCCC
Q psy2408          80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-FDNDS  156 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~  156 (298)
                      +...+.+.++.+|||+|||+|..+..+++..  ..+|+++|+|+.+++.+++++...++. ++.+++.|+..++ ..+++
T Consensus        97 ~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~~~~  175 (456)
T 3m4x_A           97 VGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHFSGF  175 (456)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHHTTC
T ss_pred             HHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhcccc
Confidence            3444566789999999999999999999864  369999999999999999999999885 6999999987763 23478


Q ss_pred             eeEEEecc------cccccC---------------h-H-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         157 FDGGWFFE------SIFHMN---------------H-S-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       157 fD~V~~~~------~l~~~~---------------~-~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      ||+|++..      ++..-+               . . .+|.++.++|||||+|+.++.....
T Consensus       176 FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~  239 (456)
T 3m4x_A          176 FDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP  239 (456)
T ss_dssp             EEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG
T ss_pred             CCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc
Confidence            99999732      221111               1 1 6799999999999999998766543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.45  E-value=4.6e-13  Score=106.21  Aligned_cols=98  Identities=15%  Similarity=0.110  Sum_probs=75.6

Q ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHhcC----------CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEE-ECCCCCCC--
Q psy2408          85 SITKGQRFIDIGCGFGLSGIRLAKAKG----------CRVDGITISKFQQESAMKTAKAEGLLDKVNFL-HGDALNLP--  151 (298)
Q Consensus        85 ~~~~~~~vLDiGcG~G~~~~~l~~~~~----------~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~-~~d~~~~~--  151 (298)
                      .+.++.+|||+|||+|.++..+++..+          .+|+++|+|+.+           .+ .++.++ .+|+...+  
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~   86 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTS   86 (196)
T ss_dssp             CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHH
Confidence            357889999999999999999999754          789999999831           12 358889 89987642  


Q ss_pred             ------CCCCCeeEEEeccccccc----ChH--------HHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 ------FDNDSFDGGWFFESIFHM----NHS--------AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 ------~~~~~fD~V~~~~~l~~~----~~~--------~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                            +++++||+|++..+++..    .+.        .+++++.++|+|||++++..+.
T Consensus        87 ~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  147 (196)
T 2nyu_A           87 QRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA  147 (196)
T ss_dssp             HHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             HHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence                  334689999986544432    221        6789999999999999998664

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.45  E-value=2.8e-14  Score=118.35  Aligned_cols=111  Identities=14%  Similarity=0.021  Sum_probs=80.7

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH-HhcCCCCceEEE--ECCCCCCCCCC
Q psy2408          78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTA-KAEGLLDKVNFL--HGDALNLPFDN  154 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~-~~~~~~~~i~~~--~~d~~~~~~~~  154 (298)
                      ..+.+...+.++.+|||+|||+|.++..+++.  .+|+|+|+++ |+..+++.. .......++.++  ++|+..++  +
T Consensus        64 ~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~  138 (265)
T 2oxt_A           64 AWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--V  138 (265)
T ss_dssp             HHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--C
T ss_pred             HHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--C
Confidence            34445455678899999999999999999985  7999999998 533221110 000011168889  99998875  5


Q ss_pred             CCeeEEEecccccccChH--------HHHHHHhhcccCCc--EEEEEeCC
Q psy2408         155 DSFDGGWFFESIFHMNHS--------AALNEARRVLKSGS--ILTLTDLP  194 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~--------~~l~~~~r~LkpgG--~l~i~~~~  194 (298)
                      ++||+|++..+ ++..++        .+|..+.++|+|||  .+++..+.
T Consensus       139 ~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          139 ERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             CCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            79999999776 544332        37899999999999  99987665

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.44  E-value=2.8e-14  Score=118.96  Aligned_cols=111  Identities=14%  Similarity=0.050  Sum_probs=81.4

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH-HhcCCCCceEEE--ECCCCCCCCCC
Q psy2408          78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTA-KAEGLLDKVNFL--HGDALNLPFDN  154 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~-~~~~~~~~i~~~--~~d~~~~~~~~  154 (298)
                      ..+.+...+.++.+|||+|||+|.++..+++.  .+|+|+|+|+ |+..+++.. .......++.++  ++|+..++  +
T Consensus        72 ~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~  146 (276)
T 2wa2_A           72 AWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--P  146 (276)
T ss_dssp             HHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--C
T ss_pred             HHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--C
Confidence            44555555678899999999999999999985  6999999998 543322110 000111168899  99998875  5


Q ss_pred             CCeeEEEecccccccChH--------HHHHHHhhcccCCc--EEEEEeCC
Q psy2408         155 DSFDGGWFFESIFHMNHS--------AALNEARRVLKSGS--ILTLTDLP  194 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~--------~~l~~~~r~LkpgG--~l~i~~~~  194 (298)
                      ++||+|++..+ ++...+        .+|+.+.++|+|||  .+++..+.
T Consensus       147 ~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          147 FQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            79999999876 444332        36899999999999  99987665

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.44  E-value=1.8e-12  Score=115.27  Aligned_cols=143  Identities=18%  Similarity=0.282  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      .....+.+.+++.+.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++. +++++++|+.+.
T Consensus       269 ~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~  346 (433)
T 1uwv_A          269 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEED  346 (433)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHH
Confidence            346778888888888778889999999999999999985 789999999999999999999988875 799999999873


Q ss_pred             ----CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHH
Q psy2408         151 ----PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDL  226 (298)
Q Consensus       151 ----~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (298)
                          ++++++||+|++.-.-.-..  .+++.+.+ ++|++.+++++..        ..+.               .-...
T Consensus       347 l~~~~~~~~~fD~Vv~dPPr~g~~--~~~~~l~~-~~p~~ivyvsc~p--------~tla---------------rd~~~  400 (433)
T 1uwv_A          347 VTKQPWAKNGFDKVLLDPARAGAA--GVMQQIIK-LEPIRIVYVSCNP--------ATLA---------------RDSEA  400 (433)
T ss_dssp             CSSSGGGTTCCSEEEECCCTTCCH--HHHHHHHH-HCCSEEEEEESCH--------HHHH---------------HHHHH
T ss_pred             hhhhhhhcCCCCEEEECCCCccHH--HHHHHHHh-cCCCeEEEEECCh--------HHHH---------------hhHHH
Confidence                34457899999743221111  44444443 6898888886422        1111               11245


Q ss_pred             HHhCCCcEEEEEeCC
Q psy2408         227 LNKSGFELIKIDDIT  241 (298)
Q Consensus       227 l~~~Gf~~~~~~~~~  241 (298)
                      |.+.||.+.....+.
T Consensus       401 l~~~Gy~~~~~~~~d  415 (433)
T 1uwv_A          401 LLKAGYTIARLAMLD  415 (433)
T ss_dssp             HHHTTCEEEEEEEEC
T ss_pred             HHHCCcEEEEEEEec
Confidence            677899988766543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.44  E-value=1.9e-13  Score=107.94  Aligned_cols=108  Identities=18%  Similarity=0.164  Sum_probs=78.5

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+.+.+-..--+.++.+|||+|||+|.++..+++. +.+|+|+|+++..           .+ .++.++++|+.+.+..
T Consensus        11 ~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~   77 (191)
T 3dou_A           11 FKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIF   77 (191)
T ss_dssp             HHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHH
T ss_pred             HHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------cC-CCeEEEEccccCHHHH
Confidence            344433333323468899999999999999999996 8899999999741           12 4699999999886421


Q ss_pred             -----------CCCeeEEEecccccccC-----------hH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         154 -----------NDSFDGGWFFESIFHMN-----------HS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       154 -----------~~~fD~V~~~~~l~~~~-----------~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                                 .++||+|++........           .. .+++.+.++|+|||.|++..+.
T Consensus        78 ~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~  141 (191)
T 3dou_A           78 DDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ  141 (191)
T ss_dssp             HHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence                       14899999864332211           11 6788899999999999987654

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.43  E-value=2.5e-13  Score=119.55  Aligned_cols=108  Identities=25%  Similarity=0.239  Sum_probs=88.4

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC----CCCCeeEEEe
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF----DNDSFDGGWF  162 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD~V~~  162 (298)
                      .++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++...++.++++++++|+.++..    +.++||+|++
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            478899999999999999999852348999999999999999999998886689999999876521    2568999998


Q ss_pred             ccccc---------ccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         163 FESIF---------HMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       163 ~~~l~---------~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .-...         +.... .++.++.++|+|||.+++.+..
T Consensus       296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  337 (396)
T 2as0_A          296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  337 (396)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            53322         12334 8999999999999999888765

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.43  E-value=4.5e-13  Score=117.96  Aligned_cols=108  Identities=17%  Similarity=0.094  Sum_probs=88.9

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEECCCCCCCC----CCCCeeEEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL-LDKVNFLHGDALNLPF----DNDSFDGGW  161 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~i~~~~~d~~~~~~----~~~~fD~V~  161 (298)
                      .++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++...++ .++++++++|+.++..    ..++||+|+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            47789999999999999999984335999999999999999999999888 6589999999877521    146899999


Q ss_pred             ecccc---------cccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         162 FFESI---------FHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       162 ~~~~l---------~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +.-..         ...... .++.++.++|+|||.+++++..
T Consensus       299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  341 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS  341 (396)
T ss_dssp             ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            86322         223445 8999999999999999998755

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.43  E-value=3.4e-13  Score=126.36  Aligned_cols=107  Identities=18%  Similarity=0.283  Sum_probs=88.8

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCC-CCCCCCeeEEEec
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGDALNL-PFDNDSFDGGWFF  163 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d~~~~-~~~~~~fD~V~~~  163 (298)
                      .++.+|||+|||+|.++..++. .++ +|+++|+|+.+++.+++++..+++. ++++++++|+.++ +...++||+|++.
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~-~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D  616 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGL-GGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID  616 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred             cCCCcEEEeeechhHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence            3688999999999999999988 454 6999999999999999999999987 5899999999873 3345789999985


Q ss_pred             cc-----------ccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         164 ES-----------IFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       164 ~~-----------l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      -.           +....+. .++..+.++|+|||.|++++..
T Consensus       617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             CCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            32           2333344 8899999999999999987654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.43  E-value=3.9e-13  Score=112.29  Aligned_cols=106  Identities=13%  Similarity=0.001  Sum_probs=84.4

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc--CC-CCceEEEECCCCCC-CCCCCCeeEEEe
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAE--GL-LDKVNFLHGDALNL-PFDNDSFDGGWF  162 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~--~~-~~~i~~~~~d~~~~-~~~~~~fD~V~~  162 (298)
                      .+.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++.+...  ++ .++++++.+|+.+. +...++||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            56799999999999999999864 469999999999999999987541  23 35799999998763 333578999998


Q ss_pred             cccccccCh-----HHHHHHHhhcccCCcEEEEEeC
Q psy2408         163 FESIFHMNH-----SAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       163 ~~~l~~~~~-----~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .......+.     ..+++++.++|+|||.+++...
T Consensus       155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~  190 (275)
T 1iy9_A          155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD  190 (275)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            544322221     2899999999999999998753

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.42  E-value=2e-13  Score=116.34  Aligned_cols=107  Identities=13%  Similarity=0.059  Sum_probs=85.5

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHh--cC-C-CCceEEEECCCCCC-CCCCCCeeEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKA--EG-L-LDKVNFLHGDALNL-PFDNDSFDGG  160 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~--~~-~-~~~i~~~~~d~~~~-~~~~~~fD~V  160 (298)
                      +.+.+|||||||+|..+..+++.. ..+++++|+++.+++.|++.+..  .+ + .++++++.+|+.+. +..+++||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            456799999999999999999864 56999999999999999998764  22 2 35799999998763 3345789999


Q ss_pred             Eecccccc---cC-----hHHHHHHHhhcccCCcEEEEEeC
Q psy2408         161 WFFESIFH---MN-----HSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       161 ~~~~~l~~---~~-----~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ++......   .+     ...+++++.++|+|||.+++...
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  196 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence            98765533   11     12899999999999999998743

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.42  E-value=3.2e-13  Score=114.09  Aligned_cols=107  Identities=13%  Similarity=0.042  Sum_probs=82.2

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHh--cCC-CCceEEEECCCCCC-CCCCCCeeEEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKA--EGL-LDKVNFLHGDALNL-PFDNDSFDGGW  161 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~fD~V~  161 (298)
                      ..+.+|||+|||+|..+..+++.. ..+|+++|+|+.+++.|++.+..  .++ .++++++.+|+.+. +...++||+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            345799999999999999999864 47999999999999999998754  223 35799999998653 33357899999


Q ss_pred             ecccccccC------hHHHHHHHhhcccCCcEEEEEeC
Q psy2408         162 FFESIFHMN------HSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       162 ~~~~l~~~~------~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +...-.++.      ...+++++.++|+|||.+++...
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  206 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  206 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence            743321121      12899999999999999999743

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.41  E-value=1.1e-12  Score=114.73  Aligned_cols=105  Identities=22%  Similarity=0.185  Sum_probs=83.8

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-CCCCCCeeEEEeccc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-PFDNDSFDGGWFFES  165 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~  165 (298)
                      .++.+|||+|||+|.++..++. .++.|+++|+|+.+++.+++++..+++..  .+.++|+.++ +...+.||+|++.-.
T Consensus       213 ~~g~~VLDlg~GtG~~sl~~a~-~ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~~~fD~Ii~dpP  289 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFALRAAR-KGAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLEGPFHHVLLDPP  289 (393)
T ss_dssp             CTTCEEEEESCTTTHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred             cCCCeEEEcccchhHHHHHHHH-cCCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhcCCCCEEEECCC
Confidence            4689999999999999999998 47789999999999999999999888763  5668998764 111344999998543


Q ss_pred             ccc---------cChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         166 IFH---------MNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       166 l~~---------~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ...         ..+. .++..+.++|+|||+|++.+..
T Consensus       290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s  328 (393)
T 4dmg_A          290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS  328 (393)
T ss_dssp             CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            311         1233 8899999999999999977655

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.41  E-value=2.4e-13  Score=119.13  Aligned_cols=105  Identities=24%  Similarity=0.229  Sum_probs=87.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC----CCCCeeEEEec
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF----DNDSFDGGWFF  163 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD~V~~~  163 (298)
                      ++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|++++...++.+ +.++++|+.++..    ..++||+|++.
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii~d  286 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVVLD  286 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence            6789999999999999999996 6799999999999999999999988864 9999999877521    14689999984


Q ss_pred             ccccc---------cChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         164 ESIFH---------MNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       164 ~~l~~---------~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      -....         .... .++.++.++|+|||.+++.+..
T Consensus       287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            32211         1233 7999999999999999998765

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.41  E-value=1.8e-13  Score=116.27  Aligned_cols=106  Identities=21%  Similarity=0.140  Sum_probs=81.8

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc--CC-CCceEEEECCCCCC-CCCCCCeeEEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAE--GL-LDKVNFLHGDALNL-PFDNDSFDGGW  161 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~--~~-~~~i~~~~~d~~~~-~~~~~~fD~V~  161 (298)
                      ..+.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|++.+...  ++ .++++++.+|+.+. +...++||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            356799999999999999999864 579999999999999999987643  33 45799999998763 32457899999


Q ss_pred             ecccccccCh-----HHHHHHHhhcccCCcEEEEEe
Q psy2408         162 FFESIFHMNH-----SAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       162 ~~~~l~~~~~-----~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +...-...+.     ..+++++.++|+|||.+++..
T Consensus       187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            8543221111     278999999999999999975

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.41  E-value=2.5e-13  Score=115.86  Aligned_cols=108  Identities=18%  Similarity=0.026  Sum_probs=84.2

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHh--cCC-CCceEEEECCCCCC-CCCCCCeeEEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKA--EGL-LDKVNFLHGDALNL-PFDNDSFDGGW  161 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~fD~V~  161 (298)
                      .++.+|||||||+|..+..+++.. +.+|+++|+|+.+++.|++++..  .++ .++++++++|+.+. +..+++||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            356799999999999999999864 57999999999999999998764  223 35799999998663 22357899999


Q ss_pred             eccccccc--C---hHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         162 FFESIFHM--N---HSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       162 ~~~~l~~~--~---~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +...-..-  .   ...+++++.++|+|||++++...+
T Consensus       195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            85431111  1   138999999999999999997543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.40  E-value=2.1e-13  Score=114.45  Aligned_cols=105  Identities=17%  Similarity=0.039  Sum_probs=82.2

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--CC--------CCceEEEECCCCCC-CCCCC
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE--GL--------LDKVNFLHGDALNL-PFDND  155 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~--~~--------~~~i~~~~~d~~~~-~~~~~  155 (298)
                      .++.+|||||||+|..+..+++....+++++|+++.+++.|++.+ ..  ++        .++++++.+|+.+. +. ++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~  151 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR  151 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence            456799999999999999999863459999999999999999987 33  22        35799999998653 22 57


Q ss_pred             CeeEEEecccccccC-----hHHHHHHHhhcccCCcEEEEEeC
Q psy2408         156 SFDGGWFFESIFHMN-----HSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~-----~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +||+|++.......+     ...+++++.++|+|||.+++...
T Consensus       152 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  194 (281)
T 1mjf_A          152 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  194 (281)
T ss_dssp             CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            899999865432111     12789999999999999998743

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.40  E-value=1.1e-12  Score=112.89  Aligned_cols=106  Identities=15%  Similarity=0.154  Sum_probs=89.0

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD  158 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  158 (298)
                      .+...+  .++.+|||+|||+|.++.. ++ .+.+|+++|+|+.+++.+++++...++.+++.++++|+.++.   ++||
T Consensus       188 ~i~~~~--~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD  260 (336)
T 2yx1_A          188 RIMKKV--SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGN  260 (336)
T ss_dssp             HHHHHC--CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEE
T ss_pred             HHHHhc--CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCc
Confidence            344444  5788999999999999999 87 567999999999999999999999998778999999998865   7899


Q ss_pred             EEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCC
Q psy2408         159 GGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPL  195 (298)
Q Consensus       159 ~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~  195 (298)
                      +|++.-..    .. .++..+.++|+|||.+++.+...
T Consensus       261 ~Vi~dpP~----~~~~~l~~~~~~L~~gG~l~~~~~~~  294 (336)
T 2yx1_A          261 RVIMNLPK----FAHKFIDKALDIVEEGGVIHYYTIGK  294 (336)
T ss_dssp             EEEECCTT----TGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred             EEEECCcH----hHHHHHHHHHHHcCCCCEEEEEEeec
Confidence            99974211    12 78999999999999999977663

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.39  E-value=2.7e-13  Score=111.32  Aligned_cols=84  Identities=17%  Similarity=0.238  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+.+.+++.+.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...   ++++++++|+.+++++
T Consensus        16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~   91 (244)
T 1qam_A           16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFP   91 (244)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCC
T ss_pred             HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc-CCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCcc
Confidence            567788888888888999999999999999999985 689999999999999999887532   4799999999998776


Q ss_pred             C-CCeeEEEe
Q psy2408         154 N-DSFDGGWF  162 (298)
Q Consensus       154 ~-~~fD~V~~  162 (298)
                      + ..|+ |++
T Consensus        92 ~~~~~~-vv~  100 (244)
T 1qam_A           92 KNQSYK-IFG  100 (244)
T ss_dssp             SSCCCE-EEE
T ss_pred             cCCCeE-EEE
Confidence            4 4553 444

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.39  E-value=5.3e-13  Score=112.00  Aligned_cols=108  Identities=17%  Similarity=-0.004  Sum_probs=84.7

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC--C-CCceEEEECCCCCC-CCCCCCeeEEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEG--L-LDKVNFLHGDALNL-PFDNDSFDGGW  161 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~--~-~~~i~~~~~d~~~~-~~~~~~fD~V~  161 (298)
                      +++.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++.+...+  + .++++++.+|+.+. +...++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            456899999999999999999864 4799999999999999999876431  1 35799999998763 22257899999


Q ss_pred             ecccccccCh-----HHHHHHHhhcccCCcEEEEEeCC
Q psy2408         162 FFESIFHMNH-----SAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       162 ~~~~l~~~~~-----~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +.......+.     ..+++++.++|+|||.+++...+
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  194 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES  194 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence            8543322221     38999999999999999987543

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.37  E-value=3.2e-12  Score=110.44  Aligned_cols=114  Identities=17%  Similarity=0.148  Sum_probs=90.7

Q ss_pred             HHHHHhC-CCCCCCeEEEeCCCCCHHHHHHHHhcC------CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          78 RIMINKT-SITKGQRFIDIGCGFGLSGIRLAKAKG------CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        78 ~~l~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~------~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      ..++..+ ...++.+|||+|||+|.++..+++...      .+++|+|+++.+++.|+.++...++  ++.++++|....
T Consensus       119 ~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~  196 (344)
T 2f8l_A          119 AYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLAN  196 (344)
T ss_dssp             HHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSC
T ss_pred             HHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCc
Confidence            3344433 345678999999999999999987642      6899999999999999999887776  488999998764


Q ss_pred             CCCCCCeeEEEecccccccCh-----------------H--HHHHHHhhcccCCcEEEEEeCC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNH-----------------S--AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~-----------------~--~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                       .+.++||+|+++-.+.+++.                 .  .++.++.+.|+|||++++..+.
T Consensus       197 -~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~  258 (344)
T 2f8l_A          197 -LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  258 (344)
T ss_dssp             -CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             -cccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence             34578999999877655432                 1  4799999999999999887654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.37  E-value=4.1e-13  Score=111.22  Aligned_cols=97  Identities=8%  Similarity=-0.076  Sum_probs=80.8

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--CC-CCceEEEECCCCCCCCCCCCeeEEEec
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE--GL-LDKVNFLHGDALNLPFDNDSFDGGWFF  163 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~--~~-~~~i~~~~~d~~~~~~~~~~fD~V~~~  163 (298)
                      +.+.+|||||||+|..+..+++. +.+|+++|+++.+++.|++.+...  ++ .++++++.+|+.++.   ++||+|++.
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d  146 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL  146 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence            35679999999999999999887 589999999999999998765421  11 357999999998764   789999985


Q ss_pred             ccccccChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         164 ESIFHMNHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       164 ~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                           ..++ .+++.+.++|+|||.+++..
T Consensus       147 -----~~dp~~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          147 -----QEPDIHRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             -----SCCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             -----CCChHHHHHHHHHhcCCCcEEEEEc
Confidence                 3456 89999999999999999864

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.36  E-value=4.1e-12  Score=106.53  Aligned_cols=89  Identities=22%  Similarity=0.272  Sum_probs=78.3

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+.+.+++.+.+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...   ++++++++|+.+++++
T Consensus        36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~~~  111 (295)
T 3gru_A           36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVDLN  111 (295)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSCGG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCCcc
Confidence            567888899998889999999999999999999995 789999999999999999998732   4799999999998887


Q ss_pred             CCCeeEEEecccc
Q psy2408         154 NDSFDGGWFFESI  166 (298)
Q Consensus       154 ~~~fD~V~~~~~l  166 (298)
                      +.+||+|+++...
T Consensus       112 ~~~fD~Iv~NlPy  124 (295)
T 3gru_A          112 KLDFNKVVANLPY  124 (295)
T ss_dssp             GSCCSEEEEECCG
T ss_pred             cCCccEEEEeCcc
Confidence            7789999977544

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.35  E-value=1.1e-11  Score=108.53  Aligned_cols=120  Identities=18%  Similarity=0.117  Sum_probs=95.5

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-C--------------------------------------CeE
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-G--------------------------------------CRV  114 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~--------------------------------------~~v  114 (298)
                      +.++..++...+..++..|||.+||+|.+++.++... +                                      .+|
T Consensus       187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  266 (393)
T 3k0b_A          187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI  266 (393)
T ss_dssp             HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence            5577778888888889999999999999998888642 1                                      469


Q ss_pred             EEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccc-ccCh---H-HHHHHHhhcccC--CcE
Q psy2408         115 DGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIF-HMNH---S-AALNEARRVLKS--GSI  187 (298)
Q Consensus       115 ~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~-~~~~---~-~~l~~~~r~Lkp--gG~  187 (298)
                      +|+|+|+.+++.|+.++...++.++++++++|+.+++.+ ++||+|+++-... .+.+   . .+.+.+.+.|++  ||.
T Consensus       267 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~  345 (393)
T 3k0b_A          267 IGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWS  345 (393)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCE
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCE
Confidence            999999999999999999999987899999999998754 5899999984432 2222   2 566666666665  888


Q ss_pred             EEEEeCC
Q psy2408         188 LTLTDLP  194 (298)
Q Consensus       188 l~i~~~~  194 (298)
                      +++....
T Consensus       346 ~~iit~~  352 (393)
T 3k0b_A          346 VYVLTSY  352 (393)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            8886553

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.35  E-value=1.7e-11  Score=108.39  Aligned_cols=111  Identities=21%  Similarity=0.294  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ....+.+.+++   +.++.+|||+|||+|.++..+++ .+.+|+|+|+|+.+++.|++++...++.  ++++++|+.++.
T Consensus       277 ~~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~-~~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~  350 (425)
T 2jjq_A          277 QAVNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAK-RGFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVS  350 (425)
T ss_dssp             HHHHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCC
T ss_pred             HHHHHHHHhhc---cCCCCEEEEeeccchHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcC
Confidence            34555666665   36788999999999999999998 4779999999999999999999988875  999999998874


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .  .+||+|++.-.-..... .+++.+. .|+|+|.+++++
T Consensus       351 ~--~~fD~Vv~dPPr~g~~~-~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          351 V--KGFDTVIVDPPRAGLHP-RLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             C--TTCSEEEECCCTTCSCH-HHHHHHH-HHCCSEEEEEES
T ss_pred             c--cCCCEEEEcCCccchHH-HHHHHHH-hcCCCcEEEEEC
Confidence            2  38999998543211111 3555554 489999999975

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.35  E-value=2.5e-11  Score=105.72  Aligned_cols=120  Identities=16%  Similarity=0.086  Sum_probs=96.7

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-C--------------------------------------CeE
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-G--------------------------------------CRV  114 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~--------------------------------------~~v  114 (298)
                      +.++..++...+..++..|||.+||+|.+++.++... +                                      .++
T Consensus       180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v  259 (384)
T 3ldg_A          180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI  259 (384)
T ss_dssp             HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence            5577778888888899999999999999999888642 2                                      469


Q ss_pred             EEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccc-ccCh---H-HHHHHHhhcccC--CcE
Q psy2408         115 DGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIF-HMNH---S-AALNEARRVLKS--GSI  187 (298)
Q Consensus       115 ~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~-~~~~---~-~~l~~~~r~Lkp--gG~  187 (298)
                      +|+|+|+.+++.|++++...++.++++++++|+.+++.+ ++||+|+++-... .+.+   . .+.+.+.+.|++  ||.
T Consensus       260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~  338 (384)
T 3ldg_A          260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWS  338 (384)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSE
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcE
Confidence            999999999999999999999988899999999998754 5899999974432 2322   2 667777777776  888


Q ss_pred             EEEEeCC
Q psy2408         188 LTLTDLP  194 (298)
Q Consensus       188 l~i~~~~  194 (298)
                      +++....
T Consensus       339 ~~iit~~  345 (384)
T 3ldg_A          339 QFILTND  345 (384)
T ss_dssp             EEEEESC
T ss_pred             EEEEECC
Confidence            8887554

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.33  E-value=6.9e-15  Score=121.10  Aligned_cols=114  Identities=22%  Similarity=0.249  Sum_probs=88.1

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC-
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN-  154 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-  154 (298)
                      ..+.+++.+.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++.   ..++++++++|+.+++++. 
T Consensus        17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~~~~~   92 (245)
T 1yub_A           17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFPNK   92 (245)
T ss_dssp             THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCCCS
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcCcccC
Confidence            4677788888888999999999999999999985 6899999999999998887764   2357999999999987763 


Q ss_pred             CCeeEEEeccc-----------ccccChH-HHH----HHHhhcccCCcEEEEEeCC
Q psy2408         155 DSFDGGWFFES-----------IFHMNHS-AAL----NEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       155 ~~fD~V~~~~~-----------l~~~~~~-~~l----~~~~r~LkpgG~l~i~~~~  194 (298)
                      ++| .|+++-.           +.|.... ..+    +.+.|+|+|||.+.+....
T Consensus        93 ~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~~  147 (245)
T 1yub_A           93 QRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLHT  147 (245)
T ss_dssp             SEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTTT
T ss_pred             CCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhee
Confidence            678 5555421           2222233 444    7799999999988775433

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.33  E-value=2e-11  Score=106.66  Aligned_cols=120  Identities=19%  Similarity=0.174  Sum_probs=96.8

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-C--------------------------------------CeE
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-G--------------------------------------CRV  114 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~--------------------------------------~~v  114 (298)
                      +.+...++...+..++.+|||++||+|.+++.++... +                                      .+|
T Consensus       181 e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  260 (385)
T 3ldu_A          181 ETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI  260 (385)
T ss_dssp             HHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred             HHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence            4577778888888899999999999999999887742 1                                      579


Q ss_pred             EEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccc-ccCh---H-HHHHHHhhcccC--CcE
Q psy2408         115 DGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIF-HMNH---S-AALNEARRVLKS--GSI  187 (298)
Q Consensus       115 ~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~-~~~~---~-~~l~~~~r~Lkp--gG~  187 (298)
                      +|+|+++.+++.|+.++...++.+++++.++|+.+++.+ ++||+|+++-... .+.+   . .+.+++.+.|++  |+.
T Consensus       261 ~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~  339 (385)
T 3ldu_A          261 YGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWS  339 (385)
T ss_dssp             EEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCE
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCE
Confidence            999999999999999999999877899999999998654 6899999975542 2222   2 667777777776  888


Q ss_pred             EEEEeCC
Q psy2408         188 LTLTDLP  194 (298)
Q Consensus       188 l~i~~~~  194 (298)
                      +++.+..
T Consensus       340 ~~iit~~  346 (385)
T 3ldu_A          340 YYLITSY  346 (385)
T ss_dssp             EEEEESC
T ss_pred             EEEEECC
Confidence            8776554

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.32  E-value=1.4e-12  Score=110.36  Aligned_cols=108  Identities=17%  Similarity=0.181  Sum_probs=77.2

Q ss_pred             HHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeC----CHHHHHHHHHHHHhcCCCCceEEEEC-CCCCCCCCC
Q psy2408          80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI----SKFQQESAMKTAKAEGLLDKVNFLHG-DALNLPFDN  154 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~----s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~  154 (298)
                      +.+...+.++.+|||+|||+|.++..+++.  .+|+|+|+    ++.+++.+.  ....+ .+++.++++ |+..++  .
T Consensus        74 i~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l~--~  146 (305)
T 2p41_A           74 FVERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFIP--P  146 (305)
T ss_dssp             HHHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTSC--C
T ss_pred             HHHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccCC--c
Confidence            444444567899999999999999999995  58999999    554432111  01111 146899998 888765  4


Q ss_pred             CCeeEEEeccccc---ccChH----HHHHHHhhcccCCcEEEEEeCC
Q psy2408         155 DSFDGGWFFESIF---HMNHS----AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       155 ~~fD~V~~~~~l~---~~~~~----~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ++||+|++..++.   +..+.    .+|..+.++|+|||.+++..+.
T Consensus       147 ~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~  193 (305)
T 2p41_A          147 ERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN  193 (305)
T ss_dssp             CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred             CCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            6899999976653   22222    4788899999999999986554

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.32  E-value=5.3e-12  Score=105.47  Aligned_cols=95  Identities=15%  Similarity=0.093  Sum_probs=71.3

Q ss_pred             hCCCCCCCeEEEeCCCC------CHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEE-EECCCCCCCCC
Q psy2408          83 KTSITKGQRFIDIGCGF------GLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNF-LHGDALNLPFD  153 (298)
Q Consensus        83 ~~~~~~~~~vLDiGcG~------G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~-~~~d~~~~~~~  153 (298)
                      .+.++++.+|||+|||+      |.  ..+++..  +.+|+|+|+|+.             + .++++ +++|+.+++++
T Consensus        58 ~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~~~~  121 (290)
T 2xyq_A           58 TLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTLIGDCATVHTA  121 (290)
T ss_dssp             CCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEEESCGGGCCCS
T ss_pred             hcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEEECccccCCcc
Confidence            45678899999999955      55  4445443  479999999987             1 25888 99999987654


Q ss_pred             CCCeeEEEecccccc-----------cChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         154 NDSFDGGWFFESIFH-----------MNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~-----------~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                       ++||+|++......           .... .+++++.++|||||+|++..+.
T Consensus       122 -~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~  173 (290)
T 2xyq_A          122 -NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE  173 (290)
T ss_dssp             -SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             -CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence             78999998643221           1112 7899999999999999997544

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.31  E-value=1.7e-11  Score=109.39  Aligned_cols=120  Identities=14%  Similarity=0.060  Sum_probs=96.5

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--------------CCeEEEEeCCHHHHHHHHHHHHhcCCCC-
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--------------GCRVDGITISKFQQESAMKTAKAEGLLD-  138 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--------------~~~v~~vD~s~~~l~~a~~~~~~~~~~~-  138 (298)
                      ..+++.+++.+.+.++.+|||.|||+|.++..+++..              +.+++|+|+++.++..|+.++...++.. 
T Consensus       157 ~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~  236 (445)
T 2okc_A          157 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD  236 (445)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcC
Confidence            4566777777777788899999999999998888752              3689999999999999999988888743 


Q ss_pred             ceEEEECCCCCCCCCCCCeeEEEecccccccCh-----------------H-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         139 KVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH-----------------S-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       139 ~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~-----------------~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ++.+.++|....+.. ++||+|+++-.+.....                 . .+++++.+.|+|||++++..+.
T Consensus       237 ~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          237 RSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             CCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             CCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence            578999998876543 58999999765544221                 2 7899999999999999887643

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.27  E-value=2e-11  Score=100.52  Aligned_cols=85  Identities=14%  Similarity=0.114  Sum_probs=71.9

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+.+.+++.+.+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++..   .++++++++|+.+++++
T Consensus        15 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~   90 (255)
T 3tqs_A           15 SFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFS   90 (255)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHH
Confidence            456778888888889999999999999999999984 68999999999999999999865   25799999999998754


Q ss_pred             ----CCCeeEEEec
Q psy2408         154 ----NDSFDGGWFF  163 (298)
Q Consensus       154 ----~~~fD~V~~~  163 (298)
                          .++|| |+++
T Consensus        91 ~~~~~~~~~-vv~N  103 (255)
T 3tqs_A           91 SVKTDKPLR-VVGN  103 (255)
T ss_dssp             GSCCSSCEE-EEEE
T ss_pred             HhccCCCeE-EEec
Confidence                24688 5443

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.25  E-value=2.6e-11  Score=105.57  Aligned_cols=115  Identities=14%  Similarity=0.115  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ....+...+++.+... +.+|||+|||+|.++..+++ ...+|+|+|+|+.+++.|++++..+++ ++++++++|+.++.
T Consensus       198 ~~~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~~  274 (369)
T 3bt7_A          198 MNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFT  274 (369)
T ss_dssp             HHHHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHHHH
T ss_pred             HHHHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHHHH
Confidence            3466777788877654 57899999999999999988 467999999999999999999998888 47999999987641


Q ss_pred             --CCC--------------CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 --FDN--------------DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 --~~~--------------~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                        +..              .+||+|++.-.-.     .+..++.+.|+++|+++....+
T Consensus       275 ~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~-----g~~~~~~~~l~~~g~ivyvsc~  328 (369)
T 3bt7_A          275 QAMNGVREFNRLQGIDLKSYQCETIFVDPPRS-----GLDSETEKMVQAYPRILYISCN  328 (369)
T ss_dssp             HHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT-----CCCHHHHHHHTTSSEEEEEESC
T ss_pred             HHHhhccccccccccccccCCCCEEEECcCcc-----ccHHHHHHHHhCCCEEEEEECC
Confidence              111              3799998631110     3456677778899988887654

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.25  E-value=2.1e-11  Score=101.03  Aligned_cols=97  Identities=19%  Similarity=0.174  Sum_probs=78.6

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+.+.+++.+.+.++ +|||||||+|.++..+++. +.+|+++|+++.+++.+++++..    .+++++++|+.+++++
T Consensus        33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~  106 (271)
T 3fut_A           33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWE  106 (271)
T ss_dssp             HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGG
T ss_pred             HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChh
Confidence            4567788888888889 9999999999999999994 68999999999999999988752    4799999999998765


Q ss_pred             C-CCeeEEEecccccccChH---HHHHH
Q psy2408         154 N-DSFDGGWFFESIFHMNHS---AALNE  177 (298)
Q Consensus       154 ~-~~fD~V~~~~~l~~~~~~---~~l~~  177 (298)
                      + ..+|.|+++-.. ++..+   .++..
T Consensus       107 ~~~~~~~iv~NlPy-~iss~il~~ll~~  133 (271)
T 3fut_A          107 EVPQGSLLVANLPY-HIATPLVTRLLKT  133 (271)
T ss_dssp             GSCTTEEEEEEECS-SCCHHHHHHHHHH
T ss_pred             hccCccEEEecCcc-cccHHHHHHHhcC
Confidence            3 268888876544 44444   55544

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.24  E-value=1.8e-11  Score=108.59  Aligned_cols=110  Identities=19%  Similarity=0.186  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ..+++.+++.+...++.+|||+|||+|.++..+++..  +.+++|+|+++.+++.|          .+++++++|+...+
T Consensus        25 ~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~   94 (421)
T 2ih2_A           25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWE   94 (421)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCC
T ss_pred             HHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcC
Confidence            5567778888776567799999999999999999863  57999999999988776          35899999998865


Q ss_pred             CCCCCeeEEEecccccc----------cCh------------------H--HHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 FDNDSFDGGWFFESIFH----------MNH------------------S--AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~----------~~~------------------~--~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                       +.++||+|+++-....          +.+                  .  .++..+.++|+|||++++..+.
T Consensus        95 -~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~  166 (421)
T 2ih2_A           95 -PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  166 (421)
T ss_dssp             -CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             -ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence             3478999999522211          111                  1  5688999999999999887655

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.24  E-value=1.2e-10  Score=98.64  Aligned_cols=115  Identities=13%  Similarity=-0.015  Sum_probs=87.0

Q ss_pred             HHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC---
Q psy2408          80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN---  154 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---  154 (298)
                      +...+.+.++.+|||+|||+|..+..+++..  ..+|+++|+++.+++.++++++..++. ++.++++|+.+++...   
T Consensus        94 ~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~  172 (309)
T 2b9e_A           94 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRY  172 (309)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGG
T ss_pred             HHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCcccccc
Confidence            3344567889999999999999999999864  369999999999999999999998874 6999999998774322   


Q ss_pred             CCeeEEEec------ccccccC-----------h-------H-HHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         155 DSFDGGWFF------ESIFHMN-----------H-------S-AALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       155 ~~fD~V~~~------~~l~~~~-----------~-------~-~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      ++||.|++.      .++..-+           +       . .+|..+.++++ ||+|+.++....
T Consensus       173 ~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~  238 (309)
T 2b9e_A          173 HEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC  238 (309)
T ss_dssp             TTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred             CCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence            579999962      2222111           1       1 46788888887 899888766543

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=99.22  E-value=4.6e-09  Score=90.64  Aligned_cols=168  Identities=14%  Similarity=0.104  Sum_probs=105.4

Q ss_pred             HHHHHHHHHhCCCCC-----CCeEEEeCCCCCHHHHHHHHh----------------cCCeEEEEeCCHHHHHHHHHHHH
Q psy2408          74 DKLSRIMINKTSITK-----GQRFIDIGCGFGLSGIRLAKA----------------KGCRVDGITISKFQQESAMKTAK  132 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~-----~~~vLDiGcG~G~~~~~l~~~----------------~~~~v~~vD~s~~~l~~a~~~~~  132 (298)
                      ..+.+..++.+...+     ..+|+|+|||+|..+..++..                +..+|..-|+-.+.....=..+.
T Consensus        33 ~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~  112 (374)
T 3b5i_A           33 LHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLP  112 (374)
T ss_dssp             HHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSC
T ss_pred             HHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhh
Confidence            445555556665543     579999999999999887321                13578888876554433322222


Q ss_pred             hcC-----------C--CC-ceEEEECCCCCCCCCCCCeeEEEecccccccC----------------------------
Q psy2408         133 AEG-----------L--LD-KVNFLHGDALNLPFDNDSFDGGWFFESIFHMN----------------------------  170 (298)
Q Consensus       133 ~~~-----------~--~~-~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~----------------------------  170 (298)
                      ...           .  .. -+.-+.+.+..-.+|++++|+|+++.+||++.                            
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v  192 (374)
T 3b5i_A          113 PLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKT  192 (374)
T ss_dssp             CBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHH
T ss_pred             hhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHH
Confidence            110           0  00 02223344444457899999999999999987                            


Q ss_pred             ----------hH-HHHHHHhhcccCCcEEEEEeCCCCCCCCCh---------hHHHHHHHh---------------hccc
Q psy2408         171 ----------HS-AALNEARRVLKSGSILTLTDLPLLSVSKND---------NKFKEYVKK---------------NIHS  215 (298)
Q Consensus       171 ----------~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---------~~~~~~~~~---------------~~~~  215 (298)
                                |. .+|+..++.|+|||++++......+..+..         ..+......               ....
T Consensus       193 ~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~  272 (374)
T 3b5i_A          193 TTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPV  272 (374)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccc
Confidence                      23 578899999999999999877665432111         011111100               1123


Q ss_pred             CCCCcchHHHHHH-hCCCcEEEEEeCC
Q psy2408         216 NFILVEHYPDLLN-KSGFELIKIDDIT  241 (298)
Q Consensus       216 ~~~~~~~~~~~l~-~~Gf~~~~~~~~~  241 (298)
                      .+.+.+++...++ +.||.+...+.+.
T Consensus       273 y~ps~~E~~~~l~~~~~F~I~~le~~~  299 (374)
T 3b5i_A          273 YAPSLQDFKEVVDANGSFAIDKLVVYK  299 (374)
T ss_dssp             CCCCHHHHHHHHHHHCSEEEEEEEEEE
T ss_pred             cCCCHHHHHHHHHhcCCcEEEEEEEEe
Confidence            4578999999998 5999998876543

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=99.17  E-value=1.1e-09  Score=94.65  Aligned_cols=149  Identities=12%  Similarity=0.041  Sum_probs=97.2

Q ss_pred             CCeEEEeCCCCCHHHHHHHHh------------------cCCeEEEEeCC-----------HHHHHHHHHHHHhcCCCCc
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKA------------------KGCRVDGITIS-----------KFQQESAMKTAKAEGLLDK  139 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~------------------~~~~v~~vD~s-----------~~~l~~a~~~~~~~~~~~~  139 (298)
                      ..+|+|+||++|..+..+...                  +..+|+..|+.           +.+.+.++..   .+...+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccCCCC
Confidence            579999999999999887664                  12478888886           4443333221   221112


Q ss_pred             eEEEECCCCC---CCCCCCCeeEEEecccccccChH----------------------------------------HHHH
Q psy2408         140 VNFLHGDALN---LPFDNDSFDGGWFFESIFHMNHS----------------------------------------AALN  176 (298)
Q Consensus       140 i~~~~~d~~~---~~~~~~~fD~V~~~~~l~~~~~~----------------------------------------~~l~  176 (298)
                      .-|+.+....   -.+|++++|+|+++.+||++.+.                                        .+|+
T Consensus       130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~  209 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR  209 (384)
T ss_dssp             SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3455554443   36889999999999999997643                                        1256


Q ss_pred             HHhhcccCCcEEEEEeCCCCCC--CCC-----hhHHHHHHHh----------hc-ccCCCCcchHHHHHHhC-CCcEEEE
Q psy2408         177 EARRVLKSGSILTLTDLPLLSV--SKN-----DNKFKEYVKK----------NI-HSNFILVEHYPDLLNKS-GFELIKI  237 (298)
Q Consensus       177 ~~~r~LkpgG~l~i~~~~~~~~--~~~-----~~~~~~~~~~----------~~-~~~~~~~~~~~~~l~~~-Gf~~~~~  237 (298)
                      ..++.|+|||++++......+.  .+.     ...+..+...          .. ...+.+.+++..++++. ||.+...
T Consensus       210 ~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l  289 (384)
T 2efj_A          210 IHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL  289 (384)
T ss_dssp             HHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred             HHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence            6689999999999998876554  210     1111111111          11 23457899999999997 4888876


Q ss_pred             EeC
Q psy2408         238 DDI  240 (298)
Q Consensus       238 ~~~  240 (298)
                      +.+
T Consensus       290 e~~  292 (384)
T 2efj_A          290 ETF  292 (384)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            644

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.17  E-value=3.6e-11  Score=101.16  Aligned_cols=86  Identities=19%  Similarity=0.180  Sum_probs=72.2

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FD  153 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~  153 (298)
                      .+.+++.+.+.++.+|||+|||+|..+..+++.. +.+|+|+|+|+.+++.|++++...+  .+++++++|+.+++  ++
T Consensus        15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~   92 (301)
T 1m6y_A           15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLK   92 (301)
T ss_dssp             HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHH
Confidence            4566677777889999999999999999999975 6799999999999999999988766  57999999998764  11


Q ss_pred             ---CCCeeEEEecc
Q psy2408         154 ---NDSFDGGWFFE  164 (298)
Q Consensus       154 ---~~~fD~V~~~~  164 (298)
                         .++||.|++..
T Consensus        93 ~~g~~~~D~Vl~D~  106 (301)
T 1m6y_A           93 TLGIEKVDGILMDL  106 (301)
T ss_dssp             HTTCSCEEEEEEEC
T ss_pred             hcCCCCCCEEEEcC
Confidence               15799998754

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.15  E-value=6.8e-11  Score=102.87  Aligned_cols=102  Identities=17%  Similarity=0.065  Sum_probs=84.9

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEECCCCCC-C-CCCCCeeEEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-G-CRVDGITISKFQQESAMKTAKAEGLLDK-VNFLHGDALNL-P-FDNDSFDGGW  161 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~-i~~~~~d~~~~-~-~~~~~fD~V~  161 (298)
                      .++.+|||++||+|..++.++... | .+|+++|+++.+++.++++++.+++.++ +.++++|+.++ . ...++||+|+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~  130 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD  130 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence            467899999999999999999864 4 5899999999999999999999998766 99999998654 1 1246799998


Q ss_pred             ecccccccChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         162 FFESIFHMNHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       162 ~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +.-    ...+ .++..+.+.|+|||.|+++.
T Consensus       131 lDP----~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          131 LDP----FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             ECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECC----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            754    1223 78889999999999988876

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.12  E-value=1.6e-10  Score=100.51  Aligned_cols=100  Identities=23%  Similarity=0.125  Sum_probs=82.2

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc---------------CCCCceEEEECCCCCCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAE---------------GLLDKVNFLHGDALNLP  151 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~---------------~~~~~i~~~~~d~~~~~  151 (298)
                      ++.+|||+|||+|..+..++... +.+|+++|+++.+++.++++++..               ++. +++++++|+..+.
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLM  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHH
Confidence            67899999999999999999974 468999999999999999999987               764 4999999987652


Q ss_pred             C-CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         152 F-DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       152 ~-~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      . ..++||+|++.- .   ... .++..+.+.|+|||.++++.
T Consensus       126 ~~~~~~fD~I~lDP-~---~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          126 AERHRYFHFIDLDP-F---GSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHSTTCEEEEEECC-S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhccCCCCEEEeCC-C---CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            1 135799998532 1   223 88999999999999988875

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.12  E-value=4.3e-10  Score=105.40  Aligned_cols=121  Identities=17%  Similarity=0.164  Sum_probs=92.7

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-------------------------------------------
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-------------------------------------------  110 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-------------------------------------------  110 (298)
                      +.++..++...+..++..|||.+||+|.+++.++...                                           
T Consensus       176 e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~  255 (703)
T 3v97_A          176 ETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY  255 (703)
T ss_dssp             HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence            4577778888888889999999999999998887631                                           


Q ss_pred             CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCCeeEEEeccccc-ccC---hH-HH---HHHHhh
Q psy2408         111 GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDSFDGGWFFESIF-HMN---HS-AA---LNEARR  180 (298)
Q Consensus       111 ~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~l~-~~~---~~-~~---l~~~~r  180 (298)
                      ..+++|+|+++.+++.|+.++...|+.+.+++.++|+.++.  ...++||+|+++-... .+.   +. .+   +.++.+
T Consensus       256 ~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk  335 (703)
T 3v97_A          256 SSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK  335 (703)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred             CccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHH
Confidence            25799999999999999999999999888999999998873  3334899999974432 111   11 33   444445


Q ss_pred             cccCCcEEEEEeCC
Q psy2408         181 VLKSGSILTLTDLP  194 (298)
Q Consensus       181 ~LkpgG~l~i~~~~  194 (298)
                      .+.|||.+++....
T Consensus       336 ~~~~g~~~~ilt~~  349 (703)
T 3v97_A          336 NQFGGWNLSLFSAS  349 (703)
T ss_dssp             HHCTTCEEEEEESC
T ss_pred             hhCCCCeEEEEeCC
Confidence            55689999887554

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.12  E-value=1.1e-11  Score=102.39  Aligned_cols=84  Identities=17%  Similarity=0.152  Sum_probs=67.7

Q ss_pred             CCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCH-------HHHHHHHHHHHhcCCCCceEEEECCCCCC-C-CCC
Q psy2408          84 TSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISK-------FQQESAMKTAKAEGLLDKVNFLHGDALNL-P-FDN  154 (298)
Q Consensus        84 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~-------~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~  154 (298)
                      +.+.++.+|||+|||+|..+..++. .+++|+++|+|+       .+++.+++++...++.++++++++|+.++ + +++
T Consensus        79 ~~~~~~~~VLDlgcG~G~~a~~lA~-~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~  157 (258)
T 2r6z_A           79 VNHTAHPTVWDATAGLGRDSFVLAS-LGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVK  157 (258)
T ss_dssp             TTGGGCCCEEETTCTTCHHHHHHHH-TTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred             hCcCCcCeEEEeeCccCHHHHHHHH-hCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhc
Confidence            3445678999999999999999999 478999999999       99999988877666655699999998774 2 333


Q ss_pred             --CCeeEEEecccccc
Q psy2408         155 --DSFDGGWFFESIFH  168 (298)
Q Consensus       155 --~~fD~V~~~~~l~~  168 (298)
                        ++||+|++.-.+.+
T Consensus       158 ~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          158 TQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHCCCSEEEECCCC--
T ss_pred             cCCCccEEEECCCCCC
Confidence              68999998655443

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.10  E-value=4e-10  Score=102.60  Aligned_cols=121  Identities=9%  Similarity=-0.057  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-------------------CCeEEEEeCCHHHHHHHHHHHHhc
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-------------------GCRVDGITISKFQQESAMKTAKAE  134 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-------------------~~~v~~vD~s~~~l~~a~~~~~~~  134 (298)
                      ..+++.|++.+.+.++.+|||.|||+|.++..+++..                   ...++|+|+++.++..|+.++...
T Consensus       155 ~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~  234 (541)
T 2ar0_A          155 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH  234 (541)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHh
Confidence            4456667777777788999999999999988887642                   147999999999999999998877


Q ss_pred             CCCC----ceEEEECCCCCCC-CCCCCeeEEEecccccccC-------------h-H-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         135 GLLD----KVNFLHGDALNLP-FDNDSFDGGWFFESIFHMN-------------H-S-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       135 ~~~~----~i~~~~~d~~~~~-~~~~~fD~V~~~~~l~~~~-------------~-~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ++..    ++.+.++|....+ .+.++||+|+++-.+....             + . .++..+.+.|+|||++++..+.
T Consensus       235 gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~  314 (541)
T 2ar0_A          235 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD  314 (541)
T ss_dssp             TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             CCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence            7753    2778999987643 3357899999975443321             2 2 8999999999999998887553

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.09  E-value=5.1e-10  Score=91.86  Aligned_cols=76  Identities=16%  Similarity=0.253  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+.+.+++.+.+.++.+|||||||+|.++..+++....+|+++|+|+.+++.++++ .    ..+++++++|+.+++++
T Consensus        17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~----~~~v~~i~~D~~~~~~~   91 (249)
T 3ftd_A           17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G----DERLEVINEDASKFPFC   91 (249)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C----CTTEEEECSCTTTCCGG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c----CCCeEEEEcchhhCChh
Confidence            456788889988889999999999999999999995347999999999999999876 2    24799999999998765


Q ss_pred             C
Q psy2408         154 N  154 (298)
Q Consensus       154 ~  154 (298)
                      +
T Consensus        92 ~   92 (249)
T 3ftd_A           92 S   92 (249)
T ss_dssp             G
T ss_pred             H
Confidence            3

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.08  E-value=1.4e-09  Score=85.63  Aligned_cols=100  Identities=14%  Similarity=0.028  Sum_probs=78.7

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC--CCceEEEECCCCCC---------------
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL--LDKVNFLHGDALNL---------------  150 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~i~~~~~d~~~~---------------  150 (298)
                      +..+|||+||  |..+..+++..+.+|+.+|.+++..+.+++.++..++  .++++++.+|+.+.               
T Consensus        30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            5679999998  4677777773378999999999999999999999998  78999999997542               


Q ss_pred             C--------C-CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         151 P--------F-DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       151 ~--------~-~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +        . ..++||+|+.-.-..    ...+..+.+.|+|||.+++.+.
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~k~----~~~~~~~l~~l~~GG~Iv~DNv  155 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGRFR----VGCALATAFSITRPVTLLFDDY  155 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSSSH----HHHHHHHHHHCSSCEEEEETTG
T ss_pred             HHHhhhhhccccCCCCCEEEEeCCCc----hhHHHHHHHhcCCCeEEEEeCC
Confidence            1        1 137899999865311    1566667799999999977654

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.07  E-value=3.5e-10  Score=94.24  Aligned_cols=74  Identities=15%  Similarity=0.259  Sum_probs=63.7

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCe----EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR----VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN  149 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~----v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~  149 (298)
                      ..+.+.+++.+.+.++.+|||||||+|.++..+++.. .+    |+++|+|+.+++.++++.     ..+++++++|+.+
T Consensus        28 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~  101 (279)
T 3uzu_A           28 HGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARL-ATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALT  101 (279)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHH-CBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhC-CCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhc
Confidence            4567778888888899999999999999999999853 34    999999999999999884     2479999999999


Q ss_pred             CCCC
Q psy2408         150 LPFD  153 (298)
Q Consensus       150 ~~~~  153 (298)
                      ++++
T Consensus       102 ~~~~  105 (279)
T 3uzu_A          102 FDFG  105 (279)
T ss_dssp             CCGG
T ss_pred             CChh
Confidence            8764

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=99.04  E-value=2.3e-09  Score=98.12  Aligned_cols=119  Identities=13%  Similarity=0.081  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHhCCC----CCCCeEEEeCCCCCHHHHHHHHh---cCC--eEEEEeCCHHHHHHHHHHHHhcCCCCc
Q psy2408          69 FAQGSDKLSRIMINKTSI----TKGQRFIDIGCGFGLSGIRLAKA---KGC--RVDGITISKFQQESAMKTAKAEGLLDK  139 (298)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~---~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~  139 (298)
                      +..+++.+.+.+.++..-    ..+..|||+|||+|.++...++.   .+.  +|++||-|+ +...+++....+++.++
T Consensus       334 y~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dk  412 (637)
T 4gqb_A          334 YSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQ  412 (637)
T ss_dssp             HHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGG
T ss_pred             HHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCe
Confidence            344555566666555422    23458999999999995555443   233  789999997 67788888888999999


Q ss_pred             eEEEECCCCCCCCCCCCeeEEEecccccccCh---HHHHHHHhhcccCCcEEE
Q psy2408         140 VNFLHGDALNLPFDNDSFDGGWFFESIFHMNH---SAALNEARRVLKSGSILT  189 (298)
Q Consensus       140 i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~---~~~l~~~~r~LkpgG~l~  189 (298)
                      |+++.+|++++.+| +++|+|++-.+-..+-.   +..+....|.|||||.++
T Consensus       413 VtVI~gd~eev~LP-EKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          413 VTVVSSDMREWVAP-EKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EEEEESCTTTCCCS-SCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEeCcceeccCC-cccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            99999999998766 78999997433222211   277778889999999864

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.03  E-value=8.4e-10  Score=100.33  Aligned_cols=120  Identities=13%  Similarity=-0.045  Sum_probs=91.7

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc----------------CCeEEEEeCCHHHHHHHHHHHHhcCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK----------------GCRVDGITISKFQQESAMKTAKAEGLL  137 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----------------~~~v~~vD~s~~~l~~a~~~~~~~~~~  137 (298)
                      ..+++.|++.+.+.++ +|||.+||+|.+...+++..                ...++|+|+++.++..|+.++...++.
T Consensus       231 ~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~  309 (544)
T 3khk_A          231 KSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID  309 (544)
T ss_dssp             HHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            4566677777766665 99999999999988775431                358999999999999999999988887


Q ss_pred             CceEEEECCCCCCC-CCCCCeeEEEecccccc-------------------------cCh----H-HHHHHHhhcccCCc
Q psy2408         138 DKVNFLHGDALNLP-FDNDSFDGGWFFESIFH-------------------------MNH----S-AALNEARRVLKSGS  186 (298)
Q Consensus       138 ~~i~~~~~d~~~~~-~~~~~fD~V~~~~~l~~-------------------------~~~----~-~~l~~~~r~LkpgG  186 (298)
                      .++.+.++|....+ ++..+||+|+++-.+..                         ++.    . .++..+.+.|+|||
T Consensus       310 ~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gG  389 (544)
T 3khk_A          310 FNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTG  389 (544)
T ss_dssp             CBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEE
T ss_pred             cccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCc
Confidence            66655888876543 45678999998533321                         111    1 68999999999999


Q ss_pred             EEEEEeCC
Q psy2408         187 ILTLTDLP  194 (298)
Q Consensus       187 ~l~i~~~~  194 (298)
                      ++.+..+.
T Consensus       390 r~aiVlP~  397 (544)
T 3khk_A          390 SMALLLAN  397 (544)
T ss_dssp             EEEEEEET
T ss_pred             eEEEEecc
Confidence            98887654

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.00  E-value=2.7e-10  Score=93.62  Aligned_cols=108  Identities=19%  Similarity=0.227  Sum_probs=75.0

Q ss_pred             HHHHHhCCCCCC--CeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc-------C-CCCceEEEECCC
Q psy2408          78 RIMINKTSITKG--QRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE-------G-LLDKVNFLHGDA  147 (298)
Q Consensus        78 ~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~-------~-~~~~i~~~~~d~  147 (298)
                      +.+++.+.+.++  .+|||+|||+|..+..++.. +++|+++|.++.+...+++.++..       + +..+++++++|.
T Consensus        76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            455666777777  89999999999999999995 789999999998877776665422       1 224699999998


Q ss_pred             CCC-CCCCCCeeEEEecccccccChHHHHHHHhhcccCCc
Q psy2408         148 LNL-PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGS  186 (298)
Q Consensus       148 ~~~-~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG  186 (298)
                      .++ +...++||+|++.-.+.+-....++++..++|++.+
T Consensus       155 ~~~L~~~~~~fDvV~lDP~y~~~~~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          155 LTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLV  194 (258)
T ss_dssp             HHHSTTCSSCCSEEEECCCCCCCCC-----HHHHHHHHHS
T ss_pred             HHHHHhCcccCCEEEEcCCCCCcccchHHHHHHHHHHHhh
Confidence            763 322247999998766654322255666666666544

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.98  E-value=4.4e-09  Score=90.14  Aligned_cols=152  Identities=14%  Similarity=0.093  Sum_probs=100.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh-----------------cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE---CCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA-----------------KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH---GDA  147 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~-----------------~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~---~d~  147 (298)
                      ...+|+|+||++|..+..+...                 +..+|+..|+..+....+-..+.......+.-|+.   +.+
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            3468999999999888766543                 12579999998877776665544211000123444   444


Q ss_pred             CCCCCCCCCeeEEEecccccccChH----------------------------------HHHHHHhhcccCCcEEEEEeC
Q psy2408         148 LNLPFDNDSFDGGWFFESIFHMNHS----------------------------------AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       148 ~~~~~~~~~fD~V~~~~~l~~~~~~----------------------------------~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ..-.+|++++|+|+++.++|++.+.                                  .+|+..++.|+|||++++...
T Consensus       131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~  210 (359)
T 1m6e_X          131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred             hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence            4456889999999999999997542                                  348889999999999999877


Q ss_pred             CCCCCCC-------ChhHHHHHH----Hh-----------hcccCCCCcchHHHHHHhCCC-cEEEEEe
Q psy2408         194 PLLSVSK-------NDNKFKEYV----KK-----------NIHSNFILVEHYPDLLNKSGF-ELIKIDD  239 (298)
Q Consensus       194 ~~~~~~~-------~~~~~~~~~----~~-----------~~~~~~~~~~~~~~~l~~~Gf-~~~~~~~  239 (298)
                      ...+..+       ....+....    ..           .....+.+.+++...+++.|. .+...+.
T Consensus       211 gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~  279 (359)
T 1m6e_X          211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEA  279 (359)
T ss_dssp             ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEE
T ss_pred             cCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEE
Confidence            6554311       011122111    11           112346779999999999864 7666543

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.97  E-value=6e-10  Score=97.14  Aligned_cols=75  Identities=21%  Similarity=0.180  Sum_probs=64.8

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCCceEEEECCCCCC-CC-CCCCeeEEEe
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE--GLLDKVNFLHGDALNL-PF-DNDSFDGGWF  162 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~--~~~~~i~~~~~d~~~~-~~-~~~~fD~V~~  162 (298)
                      .++.+|||+|||+|..+..+++ .+.+|+++|+|+.+++.|+.++...  ++ .+++++++|+.+. +. ++++||+|++
T Consensus        92 ~~g~~VLDLgcG~G~~al~LA~-~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~l  169 (410)
T 3ll7_A           92 REGTKVVDLTGGLGIDFIALMS-KASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYV  169 (410)
T ss_dssp             CTTCEEEESSCSSSHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred             CCCCEEEEeCCCchHHHHHHHh-cCCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEE
Confidence            3588999999999999999988 4789999999999999999999987  77 6899999999874 31 2358999998


Q ss_pred             c
Q psy2408         163 F  163 (298)
Q Consensus       163 ~  163 (298)
                      .
T Consensus       170 D  170 (410)
T 3ll7_A          170 D  170 (410)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.97  E-value=6.5e-09  Score=94.34  Aligned_cols=120  Identities=15%  Similarity=0.135  Sum_probs=90.6

Q ss_pred             HHHHHHHHhCC----CCCCCeEEEeCCCCCHHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEEC
Q psy2408          75 KLSRIMINKTS----ITKGQRFIDIGCGFGLSGIRLAKAK----GCRVDGITISKFQQESAMKTAKAEGLL-DKVNFLHG  145 (298)
Q Consensus        75 ~~~~~l~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~----~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~  145 (298)
                      .+++.|++.+.    ..++.+|||.+||+|.+...+++..    ...++|+|+++.++..|+.++...++. .++.+.++
T Consensus       204 ~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~g  283 (542)
T 3lkd_A          204 PVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNA  283 (542)
T ss_dssp             HHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEES
T ss_pred             HHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEec
Confidence            34444444443    3577899999999999988887753    468999999999999999998888875 46889999


Q ss_pred             CCCCC--C-CCCCCeeEEEeccccc-----------------c--cCh----H-HHHHHHhhccc-CCcEEEEEeCC
Q psy2408         146 DALNL--P-FDNDSFDGGWFFESIF-----------------H--MNH----S-AALNEARRVLK-SGSILTLTDLP  194 (298)
Q Consensus       146 d~~~~--~-~~~~~fD~V~~~~~l~-----------------~--~~~----~-~~l~~~~r~Lk-pgG~l~i~~~~  194 (298)
                      |....  | .+..+||+|+++-.+.                 +  ++.    . .++..+.+.|+ |||++.+..+.
T Consensus       284 DtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~  360 (542)
T 3lkd_A          284 DTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH  360 (542)
T ss_dssp             CTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred             ceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence            98765  3 3467899999852211                 0  111    1 68999999999 99998887654

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.97  E-value=4.3e-10  Score=92.39  Aligned_cols=92  Identities=12%  Similarity=0.092  Sum_probs=69.6

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCe--EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR--VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~--v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ..+.+.+++.+.+.++.+|||||||+|.++. +..  +.+  |+++|+++.|++.+++++...   ++++++++|+.+++
T Consensus         7 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~   80 (252)
T 1qyr_A            7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFN   80 (252)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCC
Confidence            3567778888888889999999999999999 654  456  999999999999999876532   47999999999886


Q ss_pred             CCC-----CCeeEEEecccccccChH
Q psy2408         152 FDN-----DSFDGGWFFESIFHMNHS  172 (298)
Q Consensus       152 ~~~-----~~fD~V~~~~~l~~~~~~  172 (298)
                      +++     +..|.|+++-.. ++..+
T Consensus        81 ~~~~~~~~~~~~~vvsNlPY-~i~~~  105 (252)
T 1qyr_A           81 FGELAEKMGQPLRVFGNLPY-NISTP  105 (252)
T ss_dssp             HHHHHHHHTSCEEEEEECCT-TTHHH
T ss_pred             HHHhhcccCCceEEEECCCC-CccHH
Confidence            542     134566665433 34433

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.92  E-value=1.9e-08  Score=83.53  Aligned_cols=108  Identities=16%  Similarity=0.091  Sum_probs=83.9

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhc--C--CCCceEEEECCCCCC-CCCCCCeeEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAE--G--LLDKVNFLHGDALNL-PFDNDSFDGG  160 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~--~--~~~~i~~~~~d~~~~-~~~~~~fD~V  160 (298)
                      +.+.+||-||.|.|..+..+++..+ .+++.||+++..++.+++.+...  +  -+++++++.+|+..+ .-..++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            3457999999999999999998644 68999999999999999987532  1  136899999999876 3346789999


Q ss_pred             Eecccccc-----cChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         161 WFFESIFH-----MNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       161 ~~~~~l~~-----~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +.-..-..     +-...+++.+++.|+|||.++....+
T Consensus       162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s  200 (294)
T 3o4f_A          162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV  200 (294)
T ss_dssp             EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence            86432111     11119999999999999999986433

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.87  E-value=5.2e-09  Score=95.79  Aligned_cols=100  Identities=14%  Similarity=0.005  Sum_probs=75.1

Q ss_pred             CCeEEEeCCCCCHHHHHHHHh---cC-----------CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC-
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKA---KG-----------CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD-  153 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~---~~-----------~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-  153 (298)
                      +..|||+|||+|.++...+..   .+           .+|++||.|+......+.... +++.++|+++.+|++++.+| 
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            468999999999997543221   12           399999999977766665554 67888899999999998653 


Q ss_pred             ----CCCeeEEEecccccccCh---HHHHHHHhhcccCCcEEE
Q psy2408         154 ----NDSFDGGWFFESIFHMNH---SAALNEARRVLKSGSILT  189 (298)
Q Consensus       154 ----~~~fD~V~~~~~l~~~~~---~~~l~~~~r~LkpgG~l~  189 (298)
                          .+++|+|++-..-....+   +..|..+.+.|||||.++
T Consensus       489 ~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          489 KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence                478999998554333222   278888889999999765

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.84  E-value=3.4e-09  Score=86.32  Aligned_cols=118  Identities=19%  Similarity=0.198  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      +...+.+. .+...++++.+|||+|||+|.++..+++..++ .++++|++..+....... ...+  .++..+..++...
T Consensus        59 aA~KL~ei-~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g--~~ii~~~~~~dv~  134 (277)
T 3evf_A           59 GTAKLRWF-HERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLG--WNIITFKDKTDIH  134 (277)
T ss_dssp             HHHHHHHH-HHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTT--GGGEEEECSCCTT
T ss_pred             HHHHHHHH-HHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCC--CCeEEEeccceeh
Confidence            33444443 44466788899999999999999998875443 788898874321000000 0001  1455566666555


Q ss_pred             CCCCCCeeEEEecccccccCh----H----HHHHHHhhcccCC-cEEEEEeCC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNH----S----AALNEARRVLKSG-SILTLTDLP  194 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~----~----~~l~~~~r~Lkpg-G~l~i~~~~  194 (298)
                      .++.++||+|++..+.. ...    .    .+|+.+.++|+|| |.+++-.+.
T Consensus       135 ~l~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          135 RLEPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             TSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             hcCCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            66678999999976554 332    1    4568889999999 999997665

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.84  E-value=4.4e-09  Score=86.48  Aligned_cols=129  Identities=16%  Similarity=0.105  Sum_probs=86.2

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHh--------c-----CCeEEEEeCCH---HHHH-----------HHHHHHHhc-----
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKA--------K-----GCRVDGITISK---FQQE-----------SAMKTAKAE-----  134 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~--------~-----~~~v~~vD~s~---~~l~-----------~a~~~~~~~-----  134 (298)
                      .++.+|||+|+|+|..+..+++.        +     ..+++++|..+   +.+.           .+++.+...     
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            45579999999999998876653        1     14899999765   4444           455554431     


Q ss_pred             -----CCC---CceEEEECCCCC-CCC-CC---CCeeEEEecc-cccccCh---HHHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         135 -----GLL---DKVNFLHGDALN-LPF-DN---DSFDGGWFFE-SIFHMNH---SAALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       135 -----~~~---~~i~~~~~d~~~-~~~-~~---~~fD~V~~~~-~l~~~~~---~~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                           .+.   .+++++.+|+.+ ++. ++   ..||+|+.-. .-...++   +.+++.+.++|+|||+|+.  +..  
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t--ysa--  214 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT--FTS--  214 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE--SCC--
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE--EeC--
Confidence                 011   357789999876 332 22   2799999843 1222233   2899999999999999874  220  


Q ss_pred             CCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCC
Q psy2408         198 VSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                                            ...++..|.++||.+......+
T Consensus       215 ----------------------a~~vrr~L~~aGF~v~~~~g~~  236 (257)
T 2qy6_A          215 ----------------------AGFVRRGLQEAGFTMQKRKGFG  236 (257)
T ss_dssp             ----------------------BHHHHHHHHHHTEEEEEECCST
T ss_pred             ----------------------CHHHHHHHHHCCCEEEeCCCCC
Confidence                                  1246778899999987665443

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.74  E-value=4.3e-08  Score=84.17  Aligned_cols=121  Identities=12%  Similarity=0.064  Sum_probs=91.2

Q ss_pred             HHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCC-----CceEEEECCCCCCC-C
Q psy2408          80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLL-----DKVNFLHGDALNLP-F  152 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~-----~~i~~~~~d~~~~~-~  152 (298)
                      ....+.+.+|.+|||+++|.|.=+..+++.. +..++++|+++..+...++++...+..     .++.+.+.|...++ .
T Consensus       140 ~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~  219 (359)
T 4fzv_A          140 PVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL  219 (359)
T ss_dssp             HHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH
T ss_pred             HHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh
Confidence            3344567899999999999999999998853 347999999999999999998876643     46888889987763 3


Q ss_pred             CCCCeeEEEe----cc----cccccC---------------hH--HHHHHHhhcccCCcEEEEEeCCCCCCCC
Q psy2408         153 DNDSFDGGWF----FE----SIFHMN---------------HS--AALNEARRVLKSGSILTLTDLPLLSVSK  200 (298)
Q Consensus       153 ~~~~fD~V~~----~~----~l~~~~---------------~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~  200 (298)
                      ..+.||.|++    +.    ++..-+               ..  .+|.++.+.|||||+|+-++-+....-.
T Consensus       220 ~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~EN  292 (359)
T 4fzv_A          220 EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQN  292 (359)
T ss_dssp             STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTT
T ss_pred             ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhC
Confidence            3578999985    22    111101               11  7888999999999999988777655433

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.67  E-value=5e-08  Score=79.99  Aligned_cols=83  Identities=16%  Similarity=0.143  Sum_probs=69.2

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----  151 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----  151 (298)
                      +.+.+++.+.+.++..+||.+||.|..+..+++. +++|+|+|.++.+++.+++ +..    +++.++++++.+++    
T Consensus        10 Ll~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~   83 (285)
T 1wg8_A           10 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLA   83 (285)
T ss_dssp             THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHH
T ss_pred             HHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHH
Confidence            3566777778888999999999999999999996 7899999999999999998 543    47999999998863    


Q ss_pred             -CCCCCeeEEEecc
Q psy2408         152 -FDNDSFDGGWFFE  164 (298)
Q Consensus       152 -~~~~~fD~V~~~~  164 (298)
                       ...+++|.|++..
T Consensus        84 ~~g~~~vDgIL~DL   97 (285)
T 1wg8_A           84 ALGVERVDGILADL   97 (285)
T ss_dssp             HTTCSCEEEEEEEC
T ss_pred             HcCCCCcCEEEeCC
Confidence             2235799998743

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.66  E-value=1.2e-07  Score=78.62  Aligned_cols=105  Identities=16%  Similarity=0.114  Sum_probs=82.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc------CCeEEEEeCCHH--------------------------HHHHHHHHHHhcC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK------GCRVDGITISKF--------------------------QQESAMKTAKAEG  135 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~------~~~v~~vD~s~~--------------------------~l~~a~~~~~~~~  135 (298)
                      .+..|||+|+..|..+..++...      +.+++++|..+.                          .++.++++++..+
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            34599999999999998887642      578999996421                          4677899999999


Q ss_pred             CC-CceEEEECCCCC-CC-CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         136 LL-DKVNFLHGDALN-LP-FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       136 ~~-~~i~~~~~d~~~-~~-~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +. ++++++.+|+.+ ++ ++.++||+|+.-.-.  -... ..|..+.+.|+|||.+++.++.
T Consensus       186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~~  246 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDYM  246 (282)
T ss_dssp             CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSCT
T ss_pred             CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCCC
Confidence            84 889999999865 33 445789999876532  1222 8899999999999999998764

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.64  E-value=5e-08  Score=71.43  Aligned_cols=102  Identities=13%  Similarity=0.097  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCC-HHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFG-LSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G-~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      .+.+.+.+.+..  .++.+|||||||+| ..+..|++..+..|+++|+++..++                +++.|+.+..
T Consensus        22 ~e~LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~dDiF~P~   83 (153)
T 2k4m_A           22 WNDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRDDITSPR   83 (153)
T ss_dssp             HHHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECCCSSSCC
T ss_pred             HHHHHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEccCCCCc
Confidence            456777777776  35679999999999 6999999867889999999874333                8889998843


Q ss_pred             CCC-CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         152 FDN-DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       152 ~~~-~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      ... +.||+|++...=.-+.  ..+.++.+-  -|.-++|......
T Consensus        84 ~~~Y~~~DLIYsirPP~El~--~~i~~lA~~--v~adliI~pL~~E  125 (153)
T 2k4m_A           84 MEIYRGAALIYSIRPPAEIH--SSLMRVADA--VGARLIIKPLTGE  125 (153)
T ss_dssp             HHHHTTEEEEEEESCCTTTH--HHHHHHHHH--HTCEEEEECBTTB
T ss_pred             ccccCCcCEEEEcCCCHHHH--HHHHHHHHH--cCCCEEEEcCCCC
Confidence            211 4899997654322111  333333332  3566777655533

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.62  E-value=2.7e-08  Score=81.20  Aligned_cols=118  Identities=19%  Similarity=0.132  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      +...+. ++.+...+.++.+|||+|||+|.++..+++..+ ..|+|+|++..+...+... ...+  .++.....++...
T Consensus        75 AAfKL~-ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g--~~ii~~~~~~dv~  150 (282)
T 3gcz_A           75 GSAKLR-WMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG--WNLIRFKDKTDVF  150 (282)
T ss_dssp             HHHHHH-HHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT--GGGEEEECSCCGG
T ss_pred             HHHHHH-HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC--CceEEeeCCcchh
Confidence            334443 344555778999999999999999999887544 3789999976432111100 0001  1333444333323


Q ss_pred             CCCCCCeeEEEecccccccChH--------HHHHHHhhcccCC--cEEEEEeCC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHS--------AALNEARRVLKSG--SILTLTDLP  194 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~--------~~l~~~~r~Lkpg--G~l~i~~~~  194 (298)
                      .++.+++|+|+|..+.. ....        .+|.-+..+|+||  |.|++-.+.
T Consensus       151 ~l~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          151 NMEVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             GSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             hcCCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            34568999999976655 3322        4566678899999  999997665

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.60  E-value=2.6e-07  Score=86.01  Aligned_cols=107  Identities=11%  Similarity=-0.010  Sum_probs=76.1

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcC----CeEEEEeCCHHHHHHH--HHHHHh----cCCCCceEEEECCCCCC-CCCCC
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKG----CRVDGITISKFQQESA--MKTAKA----EGLLDKVNFLHGDALNL-PFDND  155 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~----~~v~~vD~s~~~l~~a--~~~~~~----~~~~~~i~~~~~d~~~~-~~~~~  155 (298)
                      .++.+|||.|||+|.++..+++..+    .+++|+|+++.+++.|  +..+..    .++. ...+...|+... +.+.+
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~-~~~I~~dD~L~~~~~~~~  398 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNN-APTITGEDVCSLNPEDFA  398 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTB-CCEEECCCGGGCCGGGGT
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCC-cceEEecchhcccccccC
Confidence            4678999999999999999988643    5799999999999999  443332    2221 234556666553 22357


Q ss_pred             CeeEEEecccccc-c---------------------------Ch-H-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         156 SFDGGWFFESIFH-M---------------------------NH-S-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       156 ~fD~V~~~~~l~~-~---------------------------~~-~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +||+|+++--... .                           .+ . .++..+.+.|+|||++.+..+.
T Consensus       399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~  467 (878)
T 3s1s_A          399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK  467 (878)
T ss_dssp             TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred             CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence            8999998644411 0                           01 2 5788999999999999887665

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.48  E-value=6.2e-07  Score=76.53  Aligned_cols=121  Identities=16%  Similarity=0.188  Sum_probs=79.3

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      +.+|++|||+||++|.++..+++ .+++|++||+.+ |-....    .   .+++.++..|+..+..+.+.||+|+|-.+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~-rg~~V~aVD~~~-l~~~l~----~---~~~V~~~~~d~~~~~~~~~~~D~vvsDm~  279 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVK-RNMWVYSVDNGP-MAQSLM----D---TGQVTWLREDGFKFRPTRSNISWMVCDMV  279 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHH-TTCEEEEECSSC-CCHHHH----T---TTCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHH-CCCEEEEEEhhh-cChhhc----c---CCCeEEEeCccccccCCCCCcCEEEEcCC
Confidence            47899999999999999999998 578999999864 212111    1   24799999999988666778999998554


Q ss_pred             ccccChH-HHHHHHhhcccCC---cEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCc
Q psy2408         166 IFHMNHS-AALNEARRVLKSG---SILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFE  233 (298)
Q Consensus       166 l~~~~~~-~~l~~~~r~Lkpg---G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  233 (298)
                      .    .+ ..+.-+.+.|..+   +.++.......      ..+..+...        .+.+...|+..||.
T Consensus       280 ~----~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk------~~~~~l~~~--------~~~i~~~l~~~g~~  333 (375)
T 4auk_A          280 E----KPAKVAALMAQWLVNGWCRETIFNLKLPMK------KRYEEVSHN--------LAYIQAQLDEHGIN  333 (375)
T ss_dssp             S----CHHHHHHHHHHHHHTTSCSEEEEEEECCSS------SHHHHHHHH--------HHHHHHHHHHTTCC
T ss_pred             C----ChHHhHHHHHHHHhccccceEEEEEEeccc------chHHHHHHH--------HHHHHHHHHhcCcc
Confidence            3    34 5555555555444   44433333211      112222111        23567788888886

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.41  E-value=4.6e-06  Score=75.67  Aligned_cols=120  Identities=17%  Similarity=0.120  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--------------CCeEEEEeCCHHHHHHHHHHHHhcCCCCc
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--------------GCRVDGITISKFQQESAMKTAKAEGLLDK  139 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--------------~~~v~~vD~s~~~l~~a~~~~~~~~~~~~  139 (298)
                      ..+++.|++.+.+.++.+|+|-+||+|.+...+.+..              ...++|+|+++.+...|+-++.-++.. .
T Consensus       203 ~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-~  281 (530)
T 3ufb_A          203 RPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-Y  281 (530)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-C
T ss_pred             HHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-c
Confidence            5677788888888889999999999999987776531              246999999999999999888877764 3


Q ss_pred             eEEEECCCCCCCC----CCCCeeEEEecccccc---------c------ChH--HHHHHHhhccc-------CCcEEEEE
Q psy2408         140 VNFLHGDALNLPF----DNDSFDGGWFFESIFH---------M------NHS--AALNEARRVLK-------SGSILTLT  191 (298)
Q Consensus       140 i~~~~~d~~~~~~----~~~~fD~V~~~~~l~~---------~------~~~--~~l~~~~r~Lk-------pgG~l~i~  191 (298)
                      ..+..+|....|.    +..+||+|+++-.+..         +      .+.  .++..+.+.|+       |||++.+.
T Consensus       282 ~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avV  361 (530)
T 3ufb_A          282 PRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVV  361 (530)
T ss_dssp             CEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEE
T ss_pred             ccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEE
Confidence            5677888765442    2357999998654421         1      112  67888888886       79998887


Q ss_pred             eCC
Q psy2408         192 DLP  194 (298)
Q Consensus       192 ~~~  194 (298)
                      .+.
T Consensus       362 lP~  364 (530)
T 3ufb_A          362 VPN  364 (530)
T ss_dssp             EEH
T ss_pred             ecc
Confidence            553

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.39  E-value=4e-06  Score=68.55  Aligned_cols=118  Identities=22%  Similarity=0.255  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DALN  149 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~  149 (298)
                      +...+ ..+.+...+.++.+|||+||++|.++.+++...++ +|.|+|+...--+.- ..+...++ .-+.+... |+..
T Consensus        79 ~~~KL-~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w-~lV~~~~~~Dv~~  155 (321)
T 3lkz_A           79 GTAKL-RWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGW-NIVTMKSGVDVFY  155 (321)
T ss_dssp             HHHHH-HHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTG-GGEEEECSCCTTS
T ss_pred             HHHHH-HHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCC-cceEEEeccCHhh
Confidence            33344 44455567789999999999999999988887665 699999965311000 00001111 13677776 8877


Q ss_pred             CCCCCCCeeEEEecccccccChH--------HHHHHHhhcccCC-cEEEEEeCCC
Q psy2408         150 LPFDNDSFDGGWFFESIFHMNHS--------AALNEARRVLKSG-SILTLTDLPL  195 (298)
Q Consensus       150 ~~~~~~~fD~V~~~~~l~~~~~~--------~~l~~~~r~Lkpg-G~l~i~~~~~  195 (298)
                      ++.  ..+|+|+|--. +..+++        ..|.-+.+.|++| |-+++-.+..
T Consensus       156 l~~--~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p  207 (321)
T 3lkz_A          156 RPS--ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP  207 (321)
T ss_dssp             SCC--CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             CCC--CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence            653  67999998655 766664        3556667889999 8888866653

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.38  E-value=4.3e-07  Score=77.84  Aligned_cols=106  Identities=18%  Similarity=0.089  Sum_probs=78.4

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC---C----CCceEEEECCCCCCC----CCCC
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG---L----LDKVNFLHGDALNLP----FDND  155 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~---~----~~~i~~~~~d~~~~~----~~~~  155 (298)
                      .++.+||-||.|.|..+..+.+....+++.||+++..++.|++.+....   .    .++++++..|+..+-    -..+
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            3567999999999999999998656799999999999999998764211   1    135889999986541    1246


Q ss_pred             CeeEEEeccccc-------ccChH----HHHHHHhhcccCCcEEEEEe
Q psy2408         156 SFDGGWFFESIF-------HMNHS----AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       156 ~fD~V~~~~~l~-------~~~~~----~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +||+|+.-..-.       .....    .+++.+++.|+|||.++...
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~  331 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG  331 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            899998742211       11111    78899999999999988753

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=98.34  E-value=1.4e-05  Score=68.16  Aligned_cols=155  Identities=10%  Similarity=0.014  Sum_probs=102.2

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcC-----------------
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEG-----------------  135 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~-----------------  135 (298)
                      +.+++..+..   .+...|+.+|||.......+... .+.+++-||. |+.++.-++.+...+                 
T Consensus        86 D~~v~~fl~~---~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~  161 (334)
T 1rjd_A           86 DAAILEFLVA---NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSP  161 (334)
T ss_dssp             HHHHHHHHHH---CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTT
T ss_pred             HHHHHHHHHH---CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccc
Confidence            4444444443   35679999999999998888874 3567777887 777777666666541                 


Q ss_pred             ---CCCceEEEECCCCCCC--------C-CCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCC
Q psy2408         136 ---LLDKVNFLHGDALNLP--------F-DNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSK  200 (298)
Q Consensus       136 ---~~~~i~~~~~d~~~~~--------~-~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~  200 (298)
                         .+++..++..|+.+..        . ..+...++++-.++.+++..   .+++.+.... |+|.+++.+........
T Consensus       162 ~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~  240 (334)
T 1rjd_A          162 FLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPN  240 (334)
T ss_dssp             EEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTT
T ss_pred             cccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCc
Confidence               1357889999998731        1 23567899999999999987   8888888876 78887766654431111


Q ss_pred             Ch--hHH-HHHHH-h----hcccCCCCcchHHHHHHhCCCc
Q psy2408         201 ND--NKF-KEYVK-K----NIHSNFILVEHYPDLLNKSGFE  233 (298)
Q Consensus       201 ~~--~~~-~~~~~-~----~~~~~~~~~~~~~~~l~~~Gf~  233 (298)
                      ..  ... ..+.. .    .....+.+.++..+.|.++||.
T Consensus       241 ~~fg~~m~~~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~  281 (334)
T 1rjd_A          241 DRFGAIMQSNLKESRNLEMPTLMTYNSKEKYASRWSAAPNV  281 (334)
T ss_dssp             CCHHHHHHHHHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred             chHHHHHHHHhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence            01  111 11111 1    0111345788889999999996

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.31  E-value=1.3e-06  Score=71.81  Aligned_cols=106  Identities=16%  Similarity=0.122  Sum_probs=67.5

Q ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec
Q psy2408          85 SITKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF  163 (298)
Q Consensus        85 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~  163 (298)
                      -+.++.+|||+||++|.++..+++..+ ..|.|+|+...+...... ...  ...++.....++....++.+.+|+|++.
T Consensus        78 l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~--~~~~iv~~~~~~di~~l~~~~~DlVlsD  154 (300)
T 3eld_A           78 YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQT--LGWNIVKFKDKSNVFTMPTEPSDTLLCD  154 (300)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCB--TTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccc--cCCceEEeecCceeeecCCCCcCEEeec
Confidence            346889999999999999999998544 378999997532100000 000  0012333333333223446789999986


Q ss_pred             ccccccChH--------HHHHHHhhcccCC-cEEEEEeCC
Q psy2408         164 ESIFHMNHS--------AALNEARRVLKSG-SILTLTDLP  194 (298)
Q Consensus       164 ~~l~~~~~~--------~~l~~~~r~Lkpg-G~l~i~~~~  194 (298)
                      .+-. ....        .+|.-+.++|+|| |.|++-.+.
T Consensus       155 ~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          155 IGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             CCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             CcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            5544 3322        5566678999999 999997666

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.29  E-value=3.4e-06  Score=70.93  Aligned_cols=60  Identities=22%  Similarity=0.153  Sum_probs=51.7

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG  135 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~  135 (298)
                      ..+.+.+++... .++..|||++||+|.++..+++ .|.+++|+|+++.+++.|++++....
T Consensus       222 ~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~-~g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          222 LELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAAR-WGRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             HHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            456777777765 6789999999999999998887 78899999999999999999987653

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=98.21  E-value=2.2e-07  Score=97.90  Aligned_cols=145  Identities=13%  Similarity=0.065  Sum_probs=72.6

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcC------CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-CCCCCCeeE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKG------CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-PFDNDSFDG  159 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~------~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~  159 (298)
                      .+..+|||||.|+|..+..+....+      .+++..|+|+.+.+.++++++..    .+.....|..+. ++..++||+
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----di~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----HVTQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----TEEEECCCSSCCCC-----CCE
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----ccccccccccccccCCCCceeE
Confidence            4678999999999987666554332      37999999998888888887653    133333344332 334568999


Q ss_pred             EEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCC-ChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEE
Q psy2408         160 GWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSK-NDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKI  237 (298)
Q Consensus       160 V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  237 (298)
                      |++..+++..++. ..|.+++++|+|||++++.+........ ....+..  .......+.+.++|..+|.++||..+..
T Consensus      1315 via~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~~~~~~--~~r~~~~~~~~~~w~~~l~~~gf~~~~~ 1392 (2512)
T 2vz8_A         1315 LVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHPLGEMVGFLTS--PEQGGRHLLSQDQWESLFAGASLHLVAL 1392 (2512)
T ss_dssp             EEEECC--------------------CCEEEEEEC----------------------------CTTTTSSTTTTEEEEEE
T ss_pred             EEEcccccccccHHHHHHHHHHhcCCCcEEEEEecccccccccccccccc--ccccCCcccCHHHHHHHHHhCCCceeee
Confidence            9999999888888 9999999999999999987654211000 0000000  0001123467788989999999987754

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.21  E-value=2e-05  Score=62.39  Aligned_cols=112  Identities=21%  Similarity=0.242  Sum_probs=75.4

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCCCCCCCCC
Q psy2408          78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DALNLPFDND  155 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~  155 (298)
                      ..+.+...+.++.+|||+||++|.++.+++...++ +|.|+|+-..--+.- ..+...|+ +.++|..+ |+..++  ..
T Consensus        68 ~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gw-n~v~fk~gvDv~~~~--~~  143 (267)
T 3p8z_A           68 QWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGW-NIVKLMSGKDVFYLP--PE  143 (267)
T ss_dssp             HHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTT-TSEEEECSCCGGGCC--CC
T ss_pred             HHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCc-CceEEEeccceeecC--Cc
Confidence            44455557789999999999999999999887654 799999965311100 00112233 35889998 986654  26


Q ss_pred             CeeEEEecccccccChH--------HHHHHHhhcccCCcEEEEEeCCC
Q psy2408         156 SFDGGWFFESIFHMNHS--------AALNEARRVLKSGSILTLTDLPL  195 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~--------~~l~~~~r~LkpgG~l~i~~~~~  195 (298)
                      ++|.|+|--. +..+++        ..|.-+.+.|++ |-+++-.+..
T Consensus       144 ~~DtllcDIg-eSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~p  189 (267)
T 3p8z_A          144 KCDTLLCDIG-ESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNP  189 (267)
T ss_dssp             CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCC
T ss_pred             cccEEEEecC-CCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccC
Confidence            7999987433 344443        456666789998 7888765553

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.11  E-value=2.1e-05  Score=63.18  Aligned_cols=114  Identities=18%  Similarity=0.142  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCce---EEEEC-C
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKV---NFLHG-D  146 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i---~~~~~-d  146 (298)
                      +...+.+ |-++.-++|+.+|||+||+.|.++.++++..+. .|.|.++.... .    ..+....+..+   .+.++ |
T Consensus        58 AayKL~E-IdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~----~~P~~~~~~Gv~~i~~~~G~D  131 (269)
T 2px2_A           58 GTAKLRW-LVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H----EEPMLMQSYGWNIVTMKSGVD  131 (269)
T ss_dssp             HHHHHHH-HHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S----CCCCCCCSTTGGGEEEECSCC
T ss_pred             HHHHHHH-HHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c----cCCCcccCCCceEEEeeccCC
Confidence            3334433 334445789999999999999999999986221 33444443210 0    00000000122   44546 9


Q ss_pred             CCCCCCCCCCeeEEEecccccccChH--------HHHHHHhhcccCCc-EEEEEeCC
Q psy2408         147 ALNLPFDNDSFDGGWFFESIFHMNHS--------AALNEARRVLKSGS-ILTLTDLP  194 (298)
Q Consensus       147 ~~~~~~~~~~fD~V~~~~~l~~~~~~--------~~l~~~~r~LkpgG-~l~i~~~~  194 (298)
                      +.+++  ...+|+|+|-.+=. ...+        .+|.-+.++|+||| .+++-.+.
T Consensus       132 f~~~~--~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq  185 (269)
T 2px2_A          132 VFYKP--SEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC  185 (269)
T ss_dssp             GGGSC--CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             ccCCC--CCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence            98753  45799999854432 4332        34555668999999 88887666

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.91  E-value=0.00066  Score=57.14  Aligned_cols=143  Identities=15%  Similarity=0.110  Sum_probs=97.8

Q ss_pred             CeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEECCCCCCC---------CCCCCee
Q psy2408          90 QRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG--LLDKVNFLHGDALNLP---------FDNDSFD  158 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~i~~~~~d~~~~~---------~~~~~fD  158 (298)
                      ..|+++|||.-.....+..-.+.+++-+| .|..++..++.+...+  ...+..++..|+.+ .         +..+..-
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt  181 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART  181 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence            57999999987776666531247899999 5999999888887543  24578899999976 2         2223456


Q ss_pred             EEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHH----HHHHhhc-------cc-CC-CC-cc
Q psy2408         159 GGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFK----EYVKKNI-------HS-NF-IL-VE  221 (298)
Q Consensus       159 ~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~----~~~~~~~-------~~-~~-~~-~~  221 (298)
                      ++++-.+++++++.   .+++.+...+.||+.+++.......... .....    .......       .. .+ .+ .+
T Consensus       182 ~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~  260 (310)
T 2uyo_A          182 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEW-REQMQLRFRRVSDALGFEQAVDVQELIYHDENRA  260 (310)
T ss_dssp             EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHH-HHHHHHHHHHHHC-----------CCTTCCTTCC
T ss_pred             EEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCcch-hHHHHHHHHHHHHHcCCcCCCCccccccCCCChH
Confidence            78888999999887   8999999988999998887654322100 00011    1111111       11 12 25 78


Q ss_pred             hHHHHHHhCCCcEE
Q psy2408         222 HYPDLLNKSGFELI  235 (298)
Q Consensus       222 ~~~~~l~~~Gf~~~  235 (298)
                      +..+.|.++||+.+
T Consensus       261 ~~~~~f~~~G~~~~  274 (310)
T 2uyo_A          261 VVADWLNRHGWRAT  274 (310)
T ss_dssp             CHHHHHTTTTEEEE
T ss_pred             HHHHHHHHCcCccc
Confidence            99999999999987

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.85  E-value=5e-05  Score=62.50  Aligned_cols=60  Identities=18%  Similarity=0.106  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG  135 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~  135 (298)
                      ..+.+.+++... .++..|||..||+|..+....+ .|.+++|+|+++..++.+++++...+
T Consensus       199 ~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~-~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          199 RDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKK-LGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             HHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            456666776654 6889999999999999988877 78999999999999999999987554

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.81  E-value=2.2e-05  Score=65.99  Aligned_cols=86  Identities=20%  Similarity=0.091  Sum_probs=68.9

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--  151 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--  151 (298)
                      +.+.+++.+.+.|+..++|..||.|..+..+++..  .++|+|+|.++.+++.++ ++    ..+++.++++++.++.  
T Consensus        45 Ll~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~  119 (347)
T 3tka_A           45 LLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEY  119 (347)
T ss_dssp             TTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHH
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHH
Confidence            46778888888999999999999999999999874  469999999999999884 33    1367999999988762  


Q ss_pred             ---CC-CCCeeEEEecccc
Q psy2408         152 ---FD-NDSFDGGWFFESI  166 (298)
Q Consensus       152 ---~~-~~~fD~V~~~~~l  166 (298)
                         .. .+++|.|++...+
T Consensus       120 L~~~g~~~~vDgILfDLGV  138 (347)
T 3tka_A          120 VAERDLIGKIDGILLDLGV  138 (347)
T ss_dssp             HHHTTCTTCEEEEEEECSC
T ss_pred             HHhcCCCCcccEEEECCcc
Confidence               11 1369999875554

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.79  E-value=6.3e-05  Score=64.32  Aligned_cols=73  Identities=11%  Similarity=0.084  Sum_probs=60.4

Q ss_pred             HHHHHHHHHhCCCCC------CCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC
Q psy2408          74 DKLSRIMINKTSITK------GQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD  146 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~------~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d  146 (298)
                      ..+++.|++.+++.+      +..|||||.|.|.++..|++.. +.+|+++++++.++...++.. .   .+++.++.+|
T Consensus        38 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D  113 (353)
T 1i4w_A           38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRD  113 (353)
T ss_dssp             HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSC
T ss_pred             HHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECC
Confidence            566777777777653      5899999999999999999853 568999999999999988876 2   2579999999


Q ss_pred             CCCC
Q psy2408         147 ALNL  150 (298)
Q Consensus       147 ~~~~  150 (298)
                      +.++
T Consensus       114 ~l~~  117 (353)
T 1i4w_A          114 PYDW  117 (353)
T ss_dssp             TTCH
T ss_pred             ccch
Confidence            9765

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=97.76  E-value=0.013  Score=49.59  Aligned_cols=163  Identities=12%  Similarity=0.089  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcC---------------
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAKAEG---------------  135 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~l~~a~~~~~~~~---------------  135 (298)
                      .+..++..+...  .+...|+-+|||.=.....+...  .+.+++=||. |+.++.=++.+...+               
T Consensus        77 iD~~v~~fl~~~--~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~  153 (334)
T 3iei_A           77 VSQLIKAFLRKT--ECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTL  153 (334)
T ss_dssp             HHHHHHHHHHHT--TTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSC
T ss_pred             HHHHHHHHHHhC--CCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhccccccccc
Confidence            445555555543  24569999999998887777763  2567777777 444433222222100               


Q ss_pred             -------CCCceEEEECCCCCC----------CCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCC
Q psy2408         136 -------LLDKVNFLHGDALNL----------PFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPL  195 (298)
Q Consensus       136 -------~~~~i~~~~~d~~~~----------~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~  195 (298)
                             ...+..++..|+.+.          .+..+..-++++-.++.+++..   .+++.+.+.. |+|.+++.+...
T Consensus       154 ~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~  232 (334)
T 3iei_A          154 QMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVN  232 (334)
T ss_dssp             BCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred             ccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccC
Confidence                   135688999999763          1344566788899999999887   8888888766 455666656553


Q ss_pred             CCCCCChhHHHHHHHhhc-----ccCCCCcchHHHHHHhCCCcEEEEEeC
Q psy2408         196 LSVSKNDNKFKEYVKKNI-----HSNFILVEHYPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~Gf~~~~~~~~  240 (298)
                      +.... ............     ...+.++++..+.|.++||..+...++
T Consensus       233 p~d~f-g~~M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~  281 (334)
T 3iei_A          233 MGDRF-GQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM  281 (334)
T ss_dssp             TTSHH-HHHHHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred             CCCHH-HHHHHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence            22110 011111111111     113456788899999999998776653

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.60  E-value=0.00031  Score=58.49  Aligned_cols=146  Identities=16%  Similarity=0.092  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHH--HHHhCCCCCCCeEEEeCCCCCHHHHHHHH---h--cCC--eEEEEeCCH--------H-HHHHHHHH
Q psy2408          69 FAQGSDKLSRI--MINKTSITKGQRFIDIGCGFGLSGIRLAK---A--KGC--RVDGITISK--------F-QQESAMKT  130 (298)
Q Consensus        69 ~~~~~~~~~~~--l~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~--~~~--~v~~vD~s~--------~-~l~~a~~~  130 (298)
                      +.++..-.+..  +.++....+.-+|||+|-|+|........   .  ...  +++.+|..+        . .-+..+..
T Consensus        75 l~Es~hVFi~~~~L~~r~~~~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l  154 (308)
T 3vyw_A           75 IRESLYKFVRPSRILEKAKERKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFL  154 (308)
T ss_dssp             HHHHHHHTHHHHTHHHHHHHCSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHH
T ss_pred             HHHHHHHHhccCCchHHhcCCCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHH
Confidence            55554443332  22233223456899999999987644332   1  233  456666411        1 11112222


Q ss_pred             HHhc----CCCCceEEEECCCCCC-C-CCCCCeeEEEecccccccChH-----HHHHHHhhcccCCcEEEEEeCCCCCCC
Q psy2408         131 AKAE----GLLDKVNFLHGDALNL-P-FDNDSFDGGWFFESIFHMNHS-----AALNEARRVLKSGSILTLTDLPLLSVS  199 (298)
Q Consensus       131 ~~~~----~~~~~i~~~~~d~~~~-~-~~~~~fD~V~~~~~l~~~~~~-----~~l~~~~r~LkpgG~l~i~~~~~~~~~  199 (298)
                      ....    +-.-.+.+..+|+.+. + +++..||+|+.-. +.--.+|     .+++.++++++|||+++-  +.     
T Consensus       155 ~~~~p~~~~~~v~L~l~~GDa~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laT--Yt-----  226 (308)
T 3vyw_A          155 LERVPEYEGERLSLKVLLGDARKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVS--YS-----  226 (308)
T ss_dssp             HHHCSEEECSSEEEEEEESCHHHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEE--SC-----
T ss_pred             HHhCccccCCcEEEEEEechHHHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEE--Ee-----
Confidence            2111    1011346777887652 2 3445799998743 3333333     999999999999998753  32     


Q ss_pred             CChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCC
Q psy2408         200 KNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                                         ....++..|+++||.|.....++
T Consensus       227 -------------------aag~VRR~L~~aGF~V~k~~G~g  249 (308)
T 3vyw_A          227 -------------------SSLSVRKSLLTLGFKVGSSREIG  249 (308)
T ss_dssp             -------------------CCHHHHHHHHHTTCEEEEEECC-
T ss_pred             -------------------CcHHHHHHHHHCCCEEEecCCCC
Confidence                               12468889999999998877654

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.43  E-value=0.00026  Score=57.93  Aligned_cols=106  Identities=14%  Similarity=0.065  Sum_probs=66.0

Q ss_pred             HHHHHHHH-hCCCCCCCeEEEeCC------CCCHHHHHHHHh-c-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC
Q psy2408          75 KLSRIMIN-KTSITKGQRFIDIGC------GFGLSGIRLAKA-K-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG  145 (298)
Q Consensus        75 ~~~~~l~~-~~~~~~~~~vLDiGc------G~G~~~~~l~~~-~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~  145 (298)
                      .+.+++-. .+.++.+++|||+|+      .+|..  .+.+. . ++.|+++|+.+-.             ...-.++++
T Consensus        95 qlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~-------------sda~~~IqG  159 (344)
T 3r24_A           95 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV-------------SDADSTLIG  159 (344)
T ss_dssp             HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB-------------CSSSEEEES
T ss_pred             HHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc-------------cCCCeEEEc
Confidence            44444411 345678999999997      44552  33332 2 3699999997521             011245999


Q ss_pred             CCCCCCCCCCCeeEEEeccccccc----------ChH--HHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         146 DALNLPFDNDSFDGGWFFESIFHM----------NHS--AALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       146 d~~~~~~~~~~fD~V~~~~~l~~~----------~~~--~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      |+..... .++||+|++-.+-...          ...  .++.=+.+.|+|||.|++-.+--.
T Consensus       160 D~~~~~~-~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs  221 (344)
T 3r24_A          160 DCATVHT-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS  221 (344)
T ss_dssp             CGGGEEE-SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred             ccccccc-CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC
Confidence            9766532 4789999973221111          112  556667789999999999766533

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.37  E-value=0.0011  Score=57.23  Aligned_cols=103  Identities=17%  Similarity=0.206  Sum_probs=71.7

Q ss_pred             HHHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----C
Q psy2408          79 IMINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----P  151 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~  151 (298)
                      .+.+..++.++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++..+-.++     .
T Consensus       181 al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~  253 (371)
T 1f8f_A          181 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKE  253 (371)
T ss_dssp             HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred             HHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC---EEecCCccCHHHHHHH
Confidence            344667788999999999886 7788888887788 699999999998888654    321   2232221111     0


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ...+.+|+|+-..     ..+..+..+.++|+++|++++...
T Consensus       254 ~~~gg~D~vid~~-----g~~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          254 ITDGGVNFALEST-----GSPEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             HTTSCEEEEEECS-----CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred             hcCCCCcEEEECC-----CCHHHHHHHHHHHhcCCEEEEeCC
Confidence            1123799986432     234678889999999999887644

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.33  E-value=0.00052  Score=60.06  Aligned_cols=104  Identities=14%  Similarity=0.091  Sum_probs=71.2

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-C------C
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-P------F  152 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~------~  152 (298)
                      ...++.++.+||-+|||. |..+..+++..|+ +|+++|.+++.++.+++.    |.    .++..+-.++ .      .
T Consensus       179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga----~~i~~~~~~~~~~~~~~~~  250 (398)
T 2dph_A          179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----GF----ETIDLRNSAPLRDQIDQIL  250 (398)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----TC----EEEETTSSSCHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CC----cEEcCCCcchHHHHHHHHh
Confidence            567788999999999986 8888888887788 999999999988877532    32    2333221111 0      0


Q ss_pred             CCCCeeEEEecccccc---------cChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         153 DNDSFDGGWFFESIFH---------MNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~---------~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ....+|+|+-.-.-..         ...+..+..+.++|+++|++++...
T Consensus       251 ~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          251 GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence            1236999985443221         1122678889999999999887543

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=97.11  E-value=0.0023  Score=55.86  Aligned_cols=104  Identities=15%  Similarity=0.120  Sum_probs=72.0

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-C-----C-C
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-L-----P-F  152 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~-----~-~  152 (298)
                      ...++.++.+||-+|+|. |.++..+++..|+ +|+++|.+++.++.+++.    |.    ..+...-.+ +     . .
T Consensus       179 ~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----Ga----~~i~~~~~~~~~~~v~~~t  250 (398)
T 1kol_A          179 VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF----EIADLSLDTPLHEQIAALL  250 (398)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC----EEEETTSSSCHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----CC----cEEccCCcchHHHHHHHHh
Confidence            456788999999999876 7888888887788 799999999988888643    32    233221111 0     0 1


Q ss_pred             CCCCeeEEEeccccc---------ccChH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         153 DNDSFDGGWFFESIF---------HMNHS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~---------~~~~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ....+|+|+-.-...         |.+++ ..+..+.++|+++|++++...
T Consensus       251 ~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          251 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            124699998543321         23344 688999999999999887643

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.11  E-value=0.0026  Score=55.00  Aligned_cols=102  Identities=18%  Similarity=0.206  Sum_probs=71.8

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----C--
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----P--  151 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~--  151 (298)
                      ++..++.++.+||-+|+|. |..+..+++..|+ +|+++|.++..++.+++.    |..   .++...-.++     .  
T Consensus       175 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~i~~~~  247 (370)
T 4ej6_A          175 VDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GAT---ATVDPSAGDVVEAIAGPV  247 (370)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTSSCHHHHHHSTT
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEECCCCcCHHHHHHhhh
Confidence            3667788999999999875 7777888887788 899999999988888764    322   2222111110     0  


Q ss_pred             -CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 -FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 -~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                       ...+.+|+|+-.     ......+..+.++|+++|++++....
T Consensus       248 ~~~~gg~Dvvid~-----~G~~~~~~~~~~~l~~~G~vv~~G~~  286 (370)
T 4ej6_A          248 GLVPGGVDVVIEC-----AGVAETVKQSTRLAKAGGTVVILGVL  286 (370)
T ss_dssp             SSSTTCEEEEEEC-----SCCHHHHHHHHHHEEEEEEEEECSCC
T ss_pred             hccCCCCCEEEEC-----CCCHHHHHHHHHHhccCCEEEEEecc
Confidence             223479998753     33346788899999999999886543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.08  E-value=0.0014  Score=56.32  Aligned_cols=102  Identities=19%  Similarity=0.207  Sum_probs=71.4

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CC
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PF  152 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~  152 (298)
                      ++..++.++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++..+-.++      -.
T Consensus       159 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~v~~~t  231 (352)
T 3fpc_A          159 AELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GAT---DIINYKNGDIVEQILKAT  231 (352)
T ss_dssp             HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCC---EEECGGGSCHHHHHHHHT
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc---eEEcCCCcCHHHHHHHHc
Confidence            4677889999999999876 7778888887788 899999999988888765    321   2222211111      01


Q ss_pred             CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ....+|+|+-.     ...+..+..+.++|+|+|+++.....
T Consensus       232 ~g~g~D~v~d~-----~g~~~~~~~~~~~l~~~G~~v~~G~~  268 (352)
T 3fpc_A          232 DGKGVDKVVIA-----GGDVHTFAQAVKMIKPGSDIGNVNYL  268 (352)
T ss_dssp             TTCCEEEEEEC-----SSCTTHHHHHHHHEEEEEEEEECCCC
T ss_pred             CCCCCCEEEEC-----CCChHHHHHHHHHHhcCCEEEEeccc
Confidence            23469999743     22335778889999999999876543

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.07  E-value=0.00093  Score=57.28  Aligned_cols=99  Identities=21%  Similarity=0.264  Sum_probs=70.4

Q ss_pred             HHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee
Q psy2408          80 MINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD  158 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  158 (298)
                      .+...++.++.+||-+|+|. |..+..+++..|++|+++|.+++.++.+++.    |..   .++ .+...+  . +.+|
T Consensus       168 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~v~-~~~~~~--~-~~~D  236 (348)
T 3two_A          168 PLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSM----GVK---HFY-TDPKQC--K-EELD  236 (348)
T ss_dssp             HHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHT----TCS---EEE-SSGGGC--C-SCEE
T ss_pred             HHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc----CCC---eec-CCHHHH--h-cCCC
Confidence            34556788999999999875 7778888887799999999999888877653    432   222 333332  2 3799


Q ss_pred             EEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +|+-.-.     .+..+....++|+|+|++++....
T Consensus       237 ~vid~~g-----~~~~~~~~~~~l~~~G~iv~~G~~  267 (348)
T 3two_A          237 FIISTIP-----THYDLKDYLKLLTYNGDLALVGLP  267 (348)
T ss_dssp             EEEECCC-----SCCCHHHHHTTEEEEEEEEECCCC
T ss_pred             EEEECCC-----cHHHHHHHHHHHhcCCEEEEECCC
Confidence            9874322     223567888999999999886543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.03  E-value=0.0023  Score=54.59  Aligned_cols=102  Identities=20%  Similarity=0.250  Sum_probs=71.8

Q ss_pred             HHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--C--CC
Q psy2408          80 MINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--F--DN  154 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~--~~  154 (298)
                      .+...++.++.+||-+|+|. |..+..+++..|++|+++|.+++.++.+++.    |..   .++..+-.++.  .  ..
T Consensus       158 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~~i~~~~~~~~~~~~~~~  230 (340)
T 3s2e_A          158 GLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRL----GAE---VAVNARDTDPAAWLQKEI  230 (340)
T ss_dssp             HHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS---EEEETTTSCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc----CCC---EEEeCCCcCHHHHHHHhC
Confidence            34666788999999999986 8888888887899999999999988887653    321   22222111110  0  01


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +.+|+|+...     .....+..+.++|+|+|++++...
T Consensus       231 g~~d~vid~~-----g~~~~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          231 GGAHGVLVTA-----VSPKAFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             SSEEEEEESS-----CCHHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCEEEEeC-----CCHHHHHHHHHHhccCCEEEEeCC
Confidence            3688886432     234678889999999999987644

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=97.01  E-value=0.011  Score=50.72  Aligned_cols=104  Identities=16%  Similarity=0.100  Sum_probs=72.2

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC--CC------
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL--NL------  150 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~--~~------  150 (298)
                      ++..++.+|.+||-+|+|. |..+..+++..|++ |+++|.+++.++.+++. ...    -+.+...+..  ++      
T Consensus       172 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~----~~~~~~~~~~~~~~~~~v~~  246 (363)
T 3m6i_A          172 LQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE----VVTHKVERLSAEESAKKIVE  246 (363)
T ss_dssp             HHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT----CEEEECCSCCHHHHHHHHHH
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh----cccccccccchHHHHHHHHH
Confidence            4667788999999999875 77788888877886 99999999999998876 211    1222211110  00      


Q ss_pred             CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ......+|+|+-.     ...+..+..+.++|+++|++++....
T Consensus       247 ~t~g~g~Dvvid~-----~g~~~~~~~~~~~l~~~G~iv~~G~~  285 (363)
T 3m6i_A          247 SFGGIEPAVALEC-----TGVESSIAAAIWAVKFGGKVFVIGVG  285 (363)
T ss_dssp             HTSSCCCSEEEEC-----SCCHHHHHHHHHHSCTTCEEEECCCC
T ss_pred             HhCCCCCCEEEEC-----CCChHHHHHHHHHhcCCCEEEEEccC
Confidence            0123579998743     33345788899999999999886543

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.98  E-value=0.0049  Score=48.05  Aligned_cols=96  Identities=18%  Similarity=0.209  Sum_probs=63.9

Q ss_pred             HhCCCCCCCeEEEeCC--CCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--------
Q psy2408          82 NKTSITKGQRFIDIGC--GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--------  151 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--------  151 (298)
                      +..++.++.+||..|+  |.|..+..++...|++|+++|.+++.++.+++    .+..   ..+  |..+..        
T Consensus        32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~~---~~~--d~~~~~~~~~~~~~  102 (198)
T 1pqw_A           32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE---YVG--DSRSVDFADEILEL  102 (198)
T ss_dssp             TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS---EEE--ETTCSTHHHHHHHH
T ss_pred             HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEe--eCCcHHHHHHHHHH
Confidence            4567889999999994  33666666666568999999999987766543    2321   122  222211        


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .....+|+|+.+..      ...+..+.++|+|+|+++...
T Consensus       103 ~~~~~~D~vi~~~g------~~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          103 TDGYGVDVVLNSLA------GEAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             TTTCCEEEEEECCC------THHHHHHHHTEEEEEEEEECS
T ss_pred             hCCCCCeEEEECCc------hHHHHHHHHHhccCCEEEEEc
Confidence            11246999986432      256778889999999988753

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.94  E-value=0.0026  Score=54.66  Aligned_cols=101  Identities=20%  Similarity=0.173  Sum_probs=69.4

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC---CC----C-
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA---LN----L-  150 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~---~~----~-  150 (298)
                      ++..++.++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++..+-   .+    + 
T Consensus       164 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~i~  236 (356)
T 1pl8_A          164 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD---LVLQISKESPQEIARKVE  236 (356)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEECSSCCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEEcCcccccchHHHHHH
Confidence            3566788999999999875 7778888887788 899999999888877643    332   2232220   01    0 


Q ss_pred             CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ......+|+|+-.     ...+..+....++|+|+|+++....
T Consensus       237 ~~~~~g~D~vid~-----~g~~~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          237 GQLGCKPEVTIEC-----TGAEASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             HHHTSCCSEEEEC-----SCCHHHHHHHHHHSCTTCEEEECSC
T ss_pred             HHhCCCCCEEEEC-----CCChHHHHHHHHHhcCCCEEEEEec
Confidence            0001468998643     2333567888999999999987644

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.91  E-value=0.0079  Score=50.88  Aligned_cols=102  Identities=12%  Similarity=0.035  Sum_probs=69.8

Q ss_pred             HHHhCCCCCCCeEEEeC-CC-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------C
Q psy2408          80 MINKTSITKGQRFIDIG-CG-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------P  151 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~  151 (298)
                      +.+..++.++.+||-.| +| .|..+..+++..|++|++++.+++.++.+++.    |.   -.++..+-.++      .
T Consensus       132 l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----Ga---~~~~~~~~~~~~~~~~~~  204 (325)
T 3jyn_A          132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKAL----GA---WETIDYSHEDVAKRVLEL  204 (325)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TC---SEEEETTTSCHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC---CEEEeCCCccHHHHHHHH
Confidence            34556788999999999 44 47778888887799999999999988888753    32   12232221111      0


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .....+|+|+.+..-      ..+....++|+++|++++....
T Consensus       205 ~~~~g~Dvvid~~g~------~~~~~~~~~l~~~G~iv~~g~~  241 (325)
T 3jyn_A          205 TDGKKCPVVYDGVGQ------DTWLTSLDSVAPRGLVVSFGNA  241 (325)
T ss_dssp             TTTCCEEEEEESSCG------GGHHHHHTTEEEEEEEEECCCT
T ss_pred             hCCCCceEEEECCCh------HHHHHHHHHhcCCCEEEEEecC
Confidence            123479998864332      3566788999999999886543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.89  E-value=0.0037  Score=53.85  Aligned_cols=101  Identities=18%  Similarity=0.188  Sum_probs=70.7

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC------CC
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP------FD  153 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~  153 (298)
                      .+..++.++.+||-+|+|. |..+..+++..|++|+++|.+++.++.+++.    |..   .++..+..++.      ..
T Consensus       182 ~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~v~~~~~  254 (363)
T 3uog_A          182 VEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL----GAD---HGINRLEEDWVERVYALTG  254 (363)
T ss_dssp             TTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHHT
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc----CCC---EEEcCCcccHHHHHHHHhC
Confidence            3567788999999999886 7778888887899999999999988887654    321   23332211110      12


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ...+|+|+-+..-      ..+..+.++|+|+|++++....
T Consensus       255 g~g~D~vid~~g~------~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          255 DRGADHILEIAGG------AGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             TCCEEEEEEETTS------SCHHHHHHHEEEEEEEEEECCC
T ss_pred             CCCceEEEECCCh------HHHHHHHHHhhcCCEEEEEecC
Confidence            3479999754331      3466778899999999887543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.88  E-value=0.0026  Score=55.16  Aligned_cols=103  Identities=20%  Similarity=0.307  Sum_probs=71.5

Q ss_pred             HHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC--CCCC-----
Q psy2408          80 MINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD--ALNL-----  150 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d--~~~~-----  150 (298)
                      +.+...+.++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++...  -.++     
T Consensus       185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~i~  257 (378)
T 3uko_A          185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF----GVN---EFVNPKDHDKPIQEVIV  257 (378)
T ss_dssp             HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT----TCC---EEECGGGCSSCHHHHHH
T ss_pred             HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---EEEccccCchhHHHHHH
Confidence            45667888999999999975 7778888887788 899999999888877643    332   222221  1111     


Q ss_pred             CCCCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeCC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDLP  194 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~  194 (298)
                      ....+.+|+|+-.     ...+..+..+.++|++| |++++....
T Consensus       258 ~~~~gg~D~vid~-----~g~~~~~~~~~~~l~~g~G~iv~~G~~  297 (378)
T 3uko_A          258 DLTDGGVDYSFEC-----IGNVSVMRAALECCHKGWGTSVIVGVA  297 (378)
T ss_dssp             HHTTSCBSEEEEC-----SCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             HhcCCCCCEEEEC-----CCCHHHHHHHHHHhhccCCEEEEEccc
Confidence            0112479998643     34446788899999997 998886543

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=96.88  E-value=0.0025  Score=53.74  Aligned_cols=94  Identities=15%  Similarity=0.173  Sum_probs=65.6

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeE
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDG  159 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  159 (298)
                      ++..++.++.+||-+|+|. |..+..+++..|++|++++ +++.++.+++.    |.   -.++ .|...+   .+.+|+
T Consensus       135 l~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~l----Ga---~~v~-~d~~~v---~~g~Dv  202 (315)
T 3goh_A          135 FEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKR----GV---RHLY-REPSQV---TQKYFA  202 (315)
T ss_dssp             HTTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHH----TE---EEEE-SSGGGC---CSCEEE
T ss_pred             HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHc----CC---CEEE-cCHHHh---CCCccE
Confidence            3777889999999999974 7888888887899999999 98888888664    32   1222 242222   468999


Q ss_pred             EEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         160 GWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       160 V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      |+-.-.     .+ .+....++|+|+|+++...
T Consensus       203 v~d~~g-----~~-~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          203 IFDAVN-----SQ-NAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             EECC-------------TTGGGEEEEEEEEEEC
T ss_pred             EEECCC-----ch-hHHHHHHHhcCCCEEEEEe
Confidence            874322     22 2356789999999988863

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.80  E-value=0.0068  Score=51.90  Aligned_cols=101  Identities=21%  Similarity=0.176  Sum_probs=69.2

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC-CCCC------C
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA-LNLP------F  152 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~-~~~~------~  152 (298)
                      ++..++.++.+||-+|+|. |..+..+++..|++|+++|.+++.++.+++.    |.+   .++..+- .++.      .
T Consensus       161 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~~~~~~~~~~~~~~i~~~~  233 (352)
T 1e3j_A          161 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GAD---VTLVVDPAKEEESSIIERI  233 (352)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS---EEEECCTTTSCHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----CCC---EEEcCcccccHHHHHHHHh
Confidence            3566788999999999875 7777777877788999999999988887643    432   2222221 1110      0


Q ss_pred             C---CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         153 D---NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       153 ~---~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .   ...+|+|+-..     .....+....++|+|+|+++....
T Consensus       234 ~~~~g~g~D~vid~~-----g~~~~~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          234 RSAIGDLPNVTIDCS-----GNEKCITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             HHHSSSCCSEEEECS-----CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred             ccccCCCCCEEEECC-----CCHHHHHHHHHHHhcCCEEEEEec
Confidence            1   24689986432     233567888899999999887643

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.80  E-value=0.0042  Score=52.97  Aligned_cols=104  Identities=13%  Similarity=0.114  Sum_probs=69.3

Q ss_pred             HHHHHhCCCCCCCeEEEeCCC--CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----
Q psy2408          78 RIMINKTSITKGQRFIDIGCG--FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----  151 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----  151 (298)
                      ..+.+...+.++.+||-+|+|  .|..+..+++..|++|+++|.+++.++.+++.    +..   .++...-.++.    
T Consensus       134 ~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----ga~---~~~~~~~~~~~~~~~  206 (340)
T 3gms_A          134 VTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL----GAA---YVIDTSTAPLYETVM  206 (340)
T ss_dssp             HHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEETTTSCHHHHHH
T ss_pred             HHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC----CCc---EEEeCCcccHHHHHH
Confidence            344567788999999999997  47777778877799999999999888887763    321   22222111110    


Q ss_pred             --CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 --FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 --~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                        .....+|+|+.+..     .+.+ ....++|+++|++++....
T Consensus       207 ~~~~~~g~Dvvid~~g-----~~~~-~~~~~~l~~~G~iv~~G~~  245 (340)
T 3gms_A          207 ELTNGIGADAAIDSIG-----GPDG-NELAFSLRPNGHFLTIGLL  245 (340)
T ss_dssp             HHTTTSCEEEEEESSC-----HHHH-HHHHHTEEEEEEEEECCCT
T ss_pred             HHhCCCCCcEEEECCC-----ChhH-HHHHHHhcCCCEEEEEeec
Confidence              12347999875332     2222 3344899999999886543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.77  E-value=0.0027  Score=54.91  Aligned_cols=100  Identities=24%  Similarity=0.270  Sum_probs=67.7

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-C-CCCCCCe
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-L-PFDNDSF  157 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~f  157 (298)
                      +...++.++.+||-+|+|. |..+..+++..|++|+++|.+++.++.+++.    |..   .++...-.+ . ... +.+
T Consensus       187 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~-~g~  258 (369)
T 1uuf_A          187 LRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GAD---EVVNSRNADEMAAHL-KSF  258 (369)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS---EEEETTCHHHHHTTT-TCE
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCc---EEeccccHHHHHHhh-cCC
Confidence            3445788999999999975 7777788877799999999999888888753    321   222221101 0 111 579


Q ss_pred             eEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         158 DGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       158 D~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      |+|+-.-..     +..++.+.++|+++|+++....
T Consensus       259 Dvvid~~g~-----~~~~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          259 DFILNTVAA-----PHNLDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             EEEEECCSS-----CCCHHHHHTTEEEEEEEEECCC
T ss_pred             CEEEECCCC-----HHHHHHHHHHhccCCEEEEecc
Confidence            998753321     2346678899999999887543

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.74  E-value=0.0052  Score=53.86  Aligned_cols=64  Identities=17%  Similarity=0.216  Sum_probs=51.3

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHH-HhcC--CeEEEEeCCHHHHHHHHHHHHh--cCCC-CceEEEECCCCC
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLA-KAKG--CRVDGITISKFQQESAMKTAKA--EGLL-DKVNFLHGDALN  149 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~-~~~~--~~v~~vD~s~~~l~~a~~~~~~--~~~~-~~i~~~~~d~~~  149 (298)
                      ++++..|+|+|++.|..+..++ +..+  ++|+++|+++...+..++++..  ++.. .++.+++..+.+
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~  293 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE  293 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence            4788999999999999999888 4332  6999999999999999999887  2222 578777765544

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.71  E-value=0.0031  Score=53.45  Aligned_cols=60  Identities=12%  Similarity=0.108  Sum_probs=49.5

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL  136 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~  136 (298)
                      .+.+.+++... .++..|||.-||+|..+....+ .|.+++|+|+++..++.+++++...+.
T Consensus       240 ~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~-~gr~~ig~e~~~~~~~~~~~r~~~~~~  299 (323)
T 1boo_A          240 KLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAER-ESRKWISFEMKPEYVAASAFRFLDNNI  299 (323)
T ss_dssp             HHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred             HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHhccc
Confidence            45566665543 6889999999999999887776 799999999999999999998776543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.66  E-value=0.0015  Score=55.90  Aligned_cols=95  Identities=17%  Similarity=0.109  Sum_probs=66.3

Q ss_pred             CCCCCCeEEEeCCCC-CHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC----CC-CCCCCCCCC
Q psy2408          85 SITKGQRFIDIGCGF-GLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG----DA-LNLPFDNDS  156 (298)
Q Consensus        85 ~~~~~~~vLDiGcG~-G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~----d~-~~~~~~~~~  156 (298)
                      ++ ++.+||-+|+|. |..+..+++..  |++|+++|.|++.++.+++.    |..   .++..    |. ..+. ....
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~-~g~g  238 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL----GAD---YVSEMKDAESLINKLT-DGLG  238 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH----TCS---EEECHHHHHHHHHHHH-TTCC
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh----CCC---EEeccccchHHHHHhh-cCCC
Confidence            67 899999999975 77777888877  99999999999988888753    321   12211    10 1111 1237


Q ss_pred             eeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         157 FDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +|+|+-.-     ..+..++.+.++|+|+|+++....
T Consensus       239 ~D~vid~~-----g~~~~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          239 ASIAIDLV-----GTEETTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             EEEEEESS-----CCHHHHHHHHHHEEEEEEEEECCC
T ss_pred             ccEEEECC-----CChHHHHHHHHHhhcCCEEEEeCC
Confidence            99987532     233577888999999999887644

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.65  E-value=0.013  Score=49.81  Aligned_cols=99  Identities=14%  Similarity=0.154  Sum_probs=67.4

Q ss_pred             HhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC------CC
Q psy2408          82 NKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP------FD  153 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~  153 (298)
                      +..++.++.+||-+|+ | .|..+..+++..|++|+++|.+++.++.+++.    |.   -.++..+-.++.      ..
T Consensus       142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga---~~~~~~~~~~~~~~~~~~~~  214 (334)
T 3qwb_A          142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEY----GA---EYLINASKEDILRQVLKFTN  214 (334)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC---SEEEETTTSCHHHHHHHHTT
T ss_pred             HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC---cEEEeCCCchHHHHHHHHhC
Confidence            3457789999999994 3 47777777877799999999999888877653    32   122322211110      12


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ...+|+|+.+..-      ..+..+.++|+++|++++...
T Consensus       215 ~~g~D~vid~~g~------~~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          215 GKGVDASFDSVGK------DTFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             TSCEEEEEECCGG------GGHHHHHHHEEEEEEEEECCC
T ss_pred             CCCceEEEECCCh------HHHHHHHHHhccCCEEEEEcC
Confidence            3469999864432      356778889999999888643

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.62  E-value=0.01  Score=48.20  Aligned_cols=105  Identities=18%  Similarity=0.202  Sum_probs=70.8

Q ss_pred             CeEEEeCCCCCHHHHHHHHh--------cCCeEEEEe-----CCH----------------------HHHHHHHH---HH
Q psy2408          90 QRFIDIGCGFGLSGIRLAKA--------KGCRVDGIT-----ISK----------------------FQQESAMK---TA  131 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~--------~~~~v~~vD-----~s~----------------------~~l~~a~~---~~  131 (298)
                      ..|+|+||-.|..+..++..        ...+++++|     +.+                      +.+....+   +.
T Consensus        71 G~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~  150 (257)
T 3tos_A           71 GVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECS  150 (257)
T ss_dssp             SEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTT
T ss_pred             CeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhh
Confidence            39999999999998887652        236899999     321                      11221111   11


Q ss_pred             HhcCC-CCceEEEECCCCCC-C-----CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCC
Q psy2408         132 KAEGL-LDKVNFLHGDALNL-P-----FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPL  195 (298)
Q Consensus       132 ~~~~~-~~~i~~~~~d~~~~-~-----~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~  195 (298)
                      ...+. ++++.++.+++.+. |     .+..++|+|+.-.-. +-+....+..+...|+|||.+++.++..
T Consensus       151 ~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~-Y~~t~~~le~~~p~l~~GGvIv~DD~~~  220 (257)
T 3tos_A          151 DFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL-YEPTKAVLEAIRPYLTKGSIVAFDELDN  220 (257)
T ss_dssp             STTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC-HHHHHHHHHHHGGGEEEEEEEEESSTTC
T ss_pred             hhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc-cchHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence            22343 47899999998763 2     245679999876532 1111188999999999999999988753

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.62  E-value=0.0077  Score=51.19  Aligned_cols=104  Identities=16%  Similarity=0.129  Sum_probs=69.6

Q ss_pred             HHHHHhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----
Q psy2408          78 RIMINKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----  150 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----  150 (298)
                      ..+.+..++.++.+||-.|+ | .|..+..+++..|++|+++|.+++.++.+.+.   .+..   .++...-.++     
T Consensus       139 ~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~---~~~~~~~~~~~~~~~  212 (336)
T 4b7c_A          139 FALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEE---LGFD---GAIDYKNEDLAAGLK  212 (336)
T ss_dssp             HHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---TCCS---EEEETTTSCHHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCC---EEEECCCHHHHHHHH
Confidence            34446778899999999998 3 47777777777799999999999877776322   2321   2222211111     


Q ss_pred             CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ....+.+|+|+.+..-      ..+..+.++|+++|++++...
T Consensus       213 ~~~~~~~d~vi~~~g~------~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          213 RECPKGIDVFFDNVGG------EILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             HHCTTCEEEEEESSCH------HHHHHHHTTEEEEEEEEECCC
T ss_pred             HhcCCCceEEEECCCc------chHHHHHHHHhhCCEEEEEee
Confidence            0112579998754332      467888899999999887643

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.62  E-value=0.011  Score=51.55  Aligned_cols=98  Identities=14%  Similarity=0.123  Sum_probs=64.8

Q ss_pred             CCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC------CCCCC
Q psy2408          85 SITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP------FDNDS  156 (298)
Q Consensus        85 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~  156 (298)
                      ++.++.+||-+|+|. |..+..+++..|+ +|+++|.++..++.+++.    |..   .++..+-.++.      .....
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~i~~~t~g~g  282 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD---HVIDPTKENFVEAVLDYTNGLG  282 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHTTTCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEEcCCCCCHHHHHHHHhCCCC
Confidence            678999999999875 7777788887788 999999999998888755    321   22222111110      12346


Q ss_pred             eeEEEecccccccChH-HHHHHHhhcc----cCCcEEEEEeCC
Q psy2408         157 FDGGWFFESIFHMNHS-AALNEARRVL----KSGSILTLTDLP  194 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~-~~l~~~~r~L----kpgG~l~i~~~~  194 (298)
                      +|+|+-     ....+ ..+..+.++|    +++|++++....
T Consensus       283 ~D~vid-----~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~  320 (404)
T 3ip1_A          283 AKLFLE-----ATGVPQLVWPQIEEVIWRARGINATVAIVARA  320 (404)
T ss_dssp             CSEEEE-----CSSCHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred             CCEEEE-----CCCCcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence            999864     23333 3444455555    999999886543

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.62  E-value=0.0058  Score=52.78  Aligned_cols=102  Identities=22%  Similarity=0.233  Sum_probs=69.7

Q ss_pred             HHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC--CCC-----
Q psy2408          80 MINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA--LNL-----  150 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~--~~~-----  150 (298)
                      +.+..++.++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++..+-  .++     
T Consensus       183 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~i~  255 (373)
T 1p0f_A          183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GAT---ECLNPKDYDKPIYEVIC  255 (373)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHH
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc---EEEecccccchHHHHHH
Confidence            44567788999999999875 7777788887788 899999999888877643    331   2222110  111     


Q ss_pred             CCCCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDL  193 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~  193 (298)
                      ....+.+|+|+-.     ......+..+.++|+++ |++++...
T Consensus       256 ~~t~gg~Dvvid~-----~g~~~~~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          256 EKTNGGVDYAVEC-----AGRIETMMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             HHTTSCBSEEEEC-----SCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             HHhCCCCCEEEEC-----CCCHHHHHHHHHHHhcCCCEEEEEcc
Confidence            0112479998643     33346778889999999 99887643

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.61  E-value=0.015  Score=49.58  Aligned_cols=101  Identities=17%  Similarity=0.271  Sum_probs=68.0

Q ss_pred             HHhCCCCCCCeEEEeCCCC--CHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CC
Q psy2408          81 INKTSITKGQRFIDIGCGF--GLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PF  152 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~--G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~  152 (298)
                      +...++.++.+||-.|+|.  |..+..+++.. |++|+++|.+++.++.+++.    +..   .++...-.+.     ..
T Consensus       163 l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~  235 (347)
T 1jvb_A          163 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRI  235 (347)
T ss_dssp             HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCC---EEecCCCccHHHHHHHH
Confidence            3456788999999999983  56666777767 99999999999888877543    321   1222111111     01


Q ss_pred             CC-CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         153 DN-DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       153 ~~-~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .. +.+|+|+.+..     ....+..+.++|+|+|++++...
T Consensus       236 ~~~~~~d~vi~~~g-----~~~~~~~~~~~l~~~G~iv~~g~  272 (347)
T 1jvb_A          236 TESKGVDAVIDLNN-----SEKTLSVYPKALAKQGKYVMVGL  272 (347)
T ss_dssp             TTTSCEEEEEESCC-----CHHHHTTGGGGEEEEEEEEECCS
T ss_pred             hcCCCceEEEECCC-----CHHHHHHHHHHHhcCCEEEEECC
Confidence            11 47999875432     23577888999999999887644

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.56  E-value=0.0087  Score=51.03  Aligned_cols=100  Identities=19%  Similarity=0.193  Sum_probs=68.6

Q ss_pred             HHHhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC------
Q psy2408          80 MINKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP------  151 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~------  151 (298)
                      +.+...+.++.+||-.|+ | .|..+..+++..|++|++++.+++.++.+++.    +.   -.++..+ .++.      
T Consensus       151 l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga---~~v~~~~-~~~~~~v~~~  222 (342)
T 4eye_A          151 YARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV----GA---DIVLPLE-EGWAKAVREA  222 (342)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TC---SEEEESS-TTHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CC---cEEecCc-hhHHHHHHHH
Confidence            336677889999999997 4 47888888887899999999999888877764    32   1233333 2210      


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .....+|+|+-+..-      ..+..+.++|+++|++++...
T Consensus       223 ~~~~g~Dvvid~~g~------~~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          223 TGGAGVDMVVDPIGG------PAFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             TTTSCEEEEEESCC--------CHHHHHHTEEEEEEEEEC--
T ss_pred             hCCCCceEEEECCch------hHHHHHHHhhcCCCEEEEEEc
Confidence            122479999864432      256678889999999988643

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.55  E-value=0.0012  Score=54.27  Aligned_cols=101  Identities=11%  Similarity=-0.092  Sum_probs=75.5

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-C---CCCCCCeeEEEecc
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-L---PFDNDSFDGGWFFE  164 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~---~~~~~~fD~V~~~~  164 (298)
                      +..+||+=+|||.++..+.+ .+.+++.+|.++..++..++++..   .+++.++..|... +   ..+...||+|++-=
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP  167 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP  167 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred             CCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence            45799999999999999988 567999999999999999888764   3579999999644 2   12345799999866


Q ss_pred             cccccChH-HHHHHHhh--cccCCcEEEEEeC
Q psy2408         165 SIFHMNHS-AALNEARR--VLKSGSILTLTDL  193 (298)
Q Consensus       165 ~l~~~~~~-~~l~~~~r--~LkpgG~l~i~~~  193 (298)
                      ..+.-.+. .++..+..  .+.|+|.+++=-+
T Consensus       168 PYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYP  199 (283)
T 2oo3_A          168 SYERKEEYKEIPYAIKNAYSKFSTGLYCVWYP  199 (283)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             CCCCCcHHHHHHHHHHHhCccCCCeEEEEEEe
Confidence            55533344 66665555  4568898877433

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.55  E-value=0.0083  Score=51.81  Aligned_cols=102  Identities=18%  Similarity=0.257  Sum_probs=69.6

Q ss_pred             HHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC--CCC-----
Q psy2408          80 MINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA--LNL-----  150 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~--~~~-----  150 (298)
                      +.+..++.++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++...-  .++     
T Consensus       182 l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~v~  254 (373)
T 2fzw_A          182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVLI  254 (373)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHH
T ss_pred             HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEeccccccccHHHHHH
Confidence            44567788999999999875 7777777877788 899999999888887654    321   2222110  111     


Q ss_pred             CCCCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDL  193 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~  193 (298)
                      ....+.+|+|+-.     ......+..+.++|+++ |++++...
T Consensus       255 ~~~~~g~D~vid~-----~g~~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          255 EMTDGGVDYSFEC-----IGNVKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             HHTTSCBSEEEEC-----SCCHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             HHhCCCCCEEEEC-----CCcHHHHHHHHHhhccCCcEEEEEec
Confidence            0112479998643     23346778889999999 99887643

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.52  E-value=0.01  Score=50.64  Aligned_cols=100  Identities=26%  Similarity=0.290  Sum_probs=68.0

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----C-C
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----P-F  152 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~  152 (298)
                      ++..++ ++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++..+-.++     . .
T Consensus       161 l~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~---~~~~~~~~~~~~~v~~~~  232 (348)
T 2d8a_A          161 VLAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GAD---YVINPFEEDVVKEVMDIT  232 (348)
T ss_dssp             HTTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHT
T ss_pred             HHhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEECCCCcCHHHHHHHHc
Confidence            466778 999999999964 6777777776788 999999999888887643    321   2222211111     0 1


Q ss_pred             CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ....+|+|+...     ..+..++.+.++|+++|+++....
T Consensus       233 ~g~g~D~vid~~-----g~~~~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          233 DGNGVDVFLEFS-----GAPKALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             TTSCEEEEEECS-----CCHHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCCCEEEECC-----CCHHHHHHHHHHHhcCCEEEEEcc
Confidence            123699987543     234677888899999999887643

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.51  E-value=0.0048  Score=52.12  Aligned_cols=60  Identities=12%  Similarity=0.143  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCH---HHHHHHHHHHHhcC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISK---FQQESAMKTAKAEG  135 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~---~~l~~a~~~~~~~~  135 (298)
                      ..+.+.++.... .++..|||.-||+|..+....+ .+.+.+|+|+++   ..++.+++++...+
T Consensus       229 ~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~-~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          229 AAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQ-EGRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHH-HTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHH-cCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            456666666653 6889999999999999888777 789999999999   99999999876543

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.50  E-value=0.0084  Score=51.83  Aligned_cols=102  Identities=23%  Similarity=0.215  Sum_probs=69.3

Q ss_pred             HHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC--CCC-----
Q psy2408          80 MINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA--LNL-----  150 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~--~~~-----  150 (298)
                      +.+..++.++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++..+-  .++     
T Consensus       187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~v~  259 (376)
T 1e3i_A          187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT---DCLNPRELDKPVQDVIT  259 (376)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCc---EEEccccccchHHHHHH
Confidence            44567788999999999875 7777788887788 899999999888877643    321   2222110  011     


Q ss_pred             CCCCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDL  193 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~  193 (298)
                      ....+.+|+|+-.     ......+..+.++|+++ |++++...
T Consensus       260 ~~~~~g~Dvvid~-----~G~~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          260 ELTAGGVDYSLDC-----AGTAQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             HHHTSCBSEEEES-----SCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             HHhCCCccEEEEC-----CCCHHHHHHHHHHhhcCCCEEEEECC
Confidence            0012378988643     33346788899999999 99887644

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.49  E-value=0.0048  Score=52.72  Aligned_cols=69  Identities=17%  Similarity=0.142  Sum_probs=53.2

Q ss_pred             CeEEEeCCCCCHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC---CCCCeeEEEec
Q psy2408          90 QRFIDIGCGFGLSGIRLAKAKG---CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF---DNDSFDGGWFF  163 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~~~---~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~fD~V~~~  163 (298)
                      .+|||+.||.|.++..+... |   ..|.++|+++..++..+.++.      ...++++|+.++..   +...+|+|+..
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~-G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~~~~~D~l~~g   75 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMS   75 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred             CeEEEeCcCccHHHHHHHHC-CCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcCcCCcCEEEEc
Confidence            58999999999999998874 5   269999999999998888753      24578889887631   11268999875


Q ss_pred             cc
Q psy2408         164 ES  165 (298)
Q Consensus       164 ~~  165 (298)
                      .-
T Consensus        76 pP   77 (343)
T 1g55_A           76 PP   77 (343)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=96.48  E-value=0.026  Score=48.46  Aligned_cols=99  Identities=11%  Similarity=0.105  Sum_probs=68.8

Q ss_pred             HHHhCCCC-----CCCeEEEeC-CCC-CHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-
Q psy2408          80 MINKTSIT-----KGQRFIDIG-CGF-GLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-  150 (298)
Q Consensus        80 l~~~~~~~-----~~~~vLDiG-cG~-G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-  150 (298)
                      +.+..++.     ++.+||-+| +|. |..+..+++. .+++|+++|.+++.++.+++.    |..   .++... .++ 
T Consensus       158 l~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l----Gad---~vi~~~-~~~~  229 (363)
T 4dvj_A          158 FFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL----GAH---HVIDHS-KPLA  229 (363)
T ss_dssp             HHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT----TCS---EEECTT-SCHH
T ss_pred             HHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc----CCC---EEEeCC-CCHH
Confidence            34566666     788999998 664 8888888886 488999999999888887653    321   222211 111 


Q ss_pred             ----CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEE
Q psy2408         151 ----PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLT  191 (298)
Q Consensus       151 ----~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~  191 (298)
                          ....+.+|+|+-+     ...+..+..+.++|+++|++++.
T Consensus       230 ~~v~~~~~~g~Dvvid~-----~g~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          230 AEVAALGLGAPAFVFST-----THTDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             HHHHTTCSCCEEEEEEC-----SCHHHHHHHHHHHSCTTCEEEEC
T ss_pred             HHHHHhcCCCceEEEEC-----CCchhhHHHHHHHhcCCCEEEEE
Confidence                1223579988642     33346788899999999999876

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.47  E-value=0.0064  Score=51.81  Aligned_cols=98  Identities=20%  Similarity=0.185  Sum_probs=67.6

Q ss_pred             HhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC------C
Q psy2408          82 NKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD------N  154 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~------~  154 (298)
                      ...++.++.+||-+|+|. |..+..+++..|++|+++|.+++.++.+++    .|..   .++  |..+..+.      .
T Consensus       158 ~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~~--d~~~~~~~~~~~~~~  228 (339)
T 1rjw_A          158 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD---LVV--NPLKEDAAKFMKEKV  228 (339)
T ss_dssp             HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS---EEE--CTTTSCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCCC---EEe--cCCCccHHHHHHHHh
Confidence            444678999999999974 777777777778999999999988887764    2321   122  33221110      0


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +.+|+|+...     ..+..++.+.++|+++|+++....
T Consensus       229 ~~~d~vid~~-----g~~~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          229 GGVHAAVVTA-----VSKPAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             SSEEEEEESS-----CCHHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCEEEECC-----CCHHHHHHHHHHhhcCCEEEEecc
Confidence            4689886533     333577888899999999887543

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.47  E-value=0.0093  Score=51.52  Aligned_cols=102  Identities=17%  Similarity=0.249  Sum_probs=69.1

Q ss_pred             HHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC--CCC-----
Q psy2408          80 MINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA--LNL-----  150 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~--~~~-----  150 (298)
                      +.+..++.++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++...-  .++     
T Consensus       184 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~~  256 (374)
T 1cdo_A          184 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----GAT---DFVNPNDHSEPISQVLS  256 (374)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCC---EEECGGGCSSCHHHHHH
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCc---eEEeccccchhHHHHHH
Confidence            44567788999999999875 7777778887788 899999999888877643    321   2222110  011     


Q ss_pred             CCCCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDL  193 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~  193 (298)
                      ....+.+|+|+-.     ......+..+.++|+++ |++++...
T Consensus       257 ~~~~~g~D~vid~-----~g~~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          257 KMTNGGVDFSLEC-----VGNVGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             HHHTSCBSEEEEC-----SCCHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             HHhCCCCCEEEEC-----CCCHHHHHHHHHHhhcCCcEEEEEcC
Confidence            0012368988643     23346778899999999 99887643

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.44  E-value=0.014  Score=49.44  Aligned_cols=99  Identities=16%  Similarity=0.144  Sum_probs=66.8

Q ss_pred             HHHhCCCCCCCeEEEeCC--CCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-CC-----
Q psy2408          80 MINKTSITKGQRFIDIGC--GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-LP-----  151 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~~-----  151 (298)
                      +.+..++.++.+||-.||  |.|..+..++...|++|+++|.+++.++.+++.    +..   ..+  |..+ -.     
T Consensus       137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~----g~~---~~~--d~~~~~~~~~~~  207 (333)
T 1v3u_A          137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFD---AAF--NYKTVNSLEEAL  207 (333)
T ss_dssp             HHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS---EEE--ETTSCSCHHHHH
T ss_pred             HHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CCc---EEE--ecCCHHHHHHHH
Confidence            346667889999999998  346666666666789999999999888777332    321   122  3322 10     


Q ss_pred             --CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         152 --FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       152 --~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                        ...+.+|+|+.+...      ..+....++|+++|++++...
T Consensus       208 ~~~~~~~~d~vi~~~g~------~~~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          208 KKASPDGYDCYFDNVGG------EFLNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             HHHCTTCEEEEEESSCH------HHHHHHHTTEEEEEEEEECCC
T ss_pred             HHHhCCCCeEEEECCCh------HHHHHHHHHHhcCCEEEEEec
Confidence              112479998765432      357788899999999887543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.43  E-value=0.0091  Score=51.59  Aligned_cols=102  Identities=20%  Similarity=0.258  Sum_probs=68.9

Q ss_pred             HHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC--CCC-----
Q psy2408          80 MINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA--LNL-----  150 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~--~~~-----  150 (298)
                      +.+..++.++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++..+-  .++     
T Consensus       183 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~~  255 (374)
T 2jhf_A          183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GAT---ECVNPQDYKKPIQEVLT  255 (374)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHH
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCc---eEecccccchhHHHHHH
Confidence            44567788999999999875 7777777877788 899999999888877543    321   2222110  111     


Q ss_pred             CCCCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDL  193 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~  193 (298)
                      ....+.+|+|+-.     ...+..+....++|+++ |++++...
T Consensus       256 ~~~~~g~D~vid~-----~g~~~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          256 EMSNGGVDFSFEV-----IGRLDTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             HHTTSCBSEEEEC-----SCCHHHHHHHHHHBCTTTCEEEECSC
T ss_pred             HHhCCCCcEEEEC-----CCCHHHHHHHHHHhhcCCcEEEEecc
Confidence            0112478988643     33346778889999999 99887543

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.42  E-value=0.0076  Score=52.25  Aligned_cols=101  Identities=21%  Similarity=0.174  Sum_probs=68.6

Q ss_pred             HHhCC-CCCCCeEEEeCCCC-CHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC---CCC----C
Q psy2408          81 INKTS-ITKGQRFIDIGCGF-GLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD---ALN----L  150 (298)
Q Consensus        81 ~~~~~-~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d---~~~----~  150 (298)
                      +...+ +.++.+||-+|+|. |..+..+++..| ++|+++|.+++.++.+++.    |..   .++..+   -.+    +
T Consensus       187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~v  259 (380)
T 1vj0_A          187 FDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD---LTLNRRETSVEERRKAI  259 (380)
T ss_dssp             HHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS---EEEETTTSCHHHHHHHH
T ss_pred             HHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc----CCc---EEEeccccCcchHHHHH
Confidence            35567 78999999999775 777788888778 5999999999888887642    321   223222   001    0


Q ss_pred             -C-CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         151 -P-FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       151 -~-~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                       . .....+|+|+-.-.     .+..+..+.++|+++|+++....
T Consensus       260 ~~~~~g~g~Dvvid~~g-----~~~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          260 MDITHGRGADFILEATG-----DSRALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             HHHTTTSCEEEEEECSS-----CTTHHHHHHHHEEEEEEEEECCC
T ss_pred             HHHhCCCCCcEEEECCC-----CHHHHHHHHHHHhcCCEEEEEec
Confidence             0 11236999875332     22467788899999999887643

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=96.35  E-value=0.0055  Score=51.81  Aligned_cols=99  Identities=14%  Similarity=0.231  Sum_probs=66.1

Q ss_pred             HhCCCCCCC-eEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE-CCCCCC-CCCCCC
Q psy2408          82 NKTSITKGQ-RFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH-GDALNL-PFDNDS  156 (298)
Q Consensus        82 ~~~~~~~~~-~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~-~d~~~~-~~~~~~  156 (298)
                      ....+.++. +||-.|+ | .|..+..+++..|++|++++.+++.++.+++.    |..   .++. .+.... ....+.
T Consensus       139 ~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~~~  211 (324)
T 3nx4_A          139 EDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSL----GAN---RILSRDEFAESRPLEKQL  211 (324)
T ss_dssp             HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TCS---EEEEGGGSSCCCSSCCCC
T ss_pred             hhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC---EEEecCCHHHHHhhcCCC
Confidence            445555532 4999997 4 48888888887899999999999988888764    322   1221 111111 122457


Q ss_pred             eeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         157 FDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +|+|+-.     ... ..+..+.++|+|+|+++....
T Consensus       212 ~d~v~d~-----~g~-~~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          212 WAGAIDT-----VGD-KVLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             EEEEEES-----SCH-HHHHHHHHTEEEEEEEEECCC
T ss_pred             ccEEEEC-----CCc-HHHHHHHHHHhcCCEEEEEec
Confidence            9987643     222 478888999999999988643

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.30  E-value=0.02  Score=48.27  Aligned_cols=98  Identities=18%  Similarity=0.142  Sum_probs=64.6

Q ss_pred             HHHhCCCCCCCeEEEeC-CCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-CCCCCCC
Q psy2408          80 MINKTSITKGQRFIDIG-CGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-LPFDNDS  156 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiG-cG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~  156 (298)
                      .++..++.++.+||-+| +|. |..+..+++..|++|++++ ++..++.+++    .|..   .++..+-.+ +.-.-..
T Consensus       144 al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~g  215 (321)
T 3tqh_A          144 ALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKA----LGAE---QCINYHEEDFLLAISTP  215 (321)
T ss_dssp             HHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHH----HTCS---EEEETTTSCHHHHCCSC
T ss_pred             HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHH----cCCC---EEEeCCCcchhhhhccC
Confidence            34777889999999997 664 8888888887899999998 5554665554    3432   233222111 1101146


Q ss_pred             eeEEEecccccccChHHHHHHHhhcccCCcEEEEE
Q psy2408         157 FDGGWFFESIFHMNHSAALNEARRVLKSGSILTLT  191 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~  191 (298)
                      +|+|+-.     ...+.+ ....++|+++|+++..
T Consensus       216 ~D~v~d~-----~g~~~~-~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          216 VDAVIDL-----VGGDVG-IQSIDCLKETGCIVSV  244 (321)
T ss_dssp             EEEEEES-----SCHHHH-HHHGGGEEEEEEEEEC
T ss_pred             CCEEEEC-----CCcHHH-HHHHHhccCCCEEEEe
Confidence            8988643     233333 7889999999998875

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=96.29  E-value=0.026  Score=48.11  Aligned_cols=100  Identities=20%  Similarity=0.191  Sum_probs=68.3

Q ss_pred             HHHHhCCCC------CCCeEEEe-CCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          79 IMINKTSIT------KGQRFIDI-GCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        79 ~l~~~~~~~------~~~~vLDi-GcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      .+.+...+.      ++.+||-+ |+|. |..+..+++..|++|++++.+++.++.+++.    |..   .++..+ .++
T Consensus       135 ~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~-~~~  206 (346)
T 3fbg_A          135 TLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKM----GAD---IVLNHK-ESL  206 (346)
T ss_dssp             HHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHH----TCS---EEECTT-SCH
T ss_pred             HHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCc---EEEECC-ccH
Confidence            344666776      89999999 4554 7777788887799999999999988888764    321   222211 111


Q ss_pred             -----CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEE
Q psy2408         151 -----PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLT  191 (298)
Q Consensus       151 -----~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~  191 (298)
                           ......+|+|+-+     ...+..+..+.++|+++|+++..
T Consensus       207 ~~~~~~~~~~g~Dvv~d~-----~g~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          207 LNQFKTQGIELVDYVFCT-----FNTDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             HHHHHHHTCCCEEEEEES-----SCHHHHHHHHHHHEEEEEEEEES
T ss_pred             HHHHHHhCCCCccEEEEC-----CCchHHHHHHHHHhccCCEEEEE
Confidence                 0123469988753     23346778899999999998764

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.29  E-value=0.02  Score=49.14  Aligned_cols=100  Identities=15%  Similarity=0.108  Sum_probs=68.4

Q ss_pred             HHhCCCCCCCeEEEeC-CC-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCC
Q psy2408          81 INKTSITKGQRFIDIG-CG-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFD  153 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~  153 (298)
                      .+..++.++.+||-+| +| .|..+..+++..|++|++++.+++.++.+++    .|..   .++..+-.++     ...
T Consensus       156 ~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~~  228 (362)
T 2c0c_A          156 KELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LGCD---RPINYKTEPVGTVLKQEY  228 (362)
T ss_dssp             HHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHC
T ss_pred             HHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHhc
Confidence            3455778999999999 34 5888888888789999999999988887765    2321   2222221111     011


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ...+|+|+.+..-      ..++.+.++|+++|++++...
T Consensus       229 ~~g~D~vid~~g~------~~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          229 PEGVDVVYESVGG------AMFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             TTCEEEEEECSCT------HHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCCEEEECCCH------HHHHHHHHHHhcCCEEEEEeC
Confidence            2469998754331      467788899999999887543

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=96.29  E-value=0.0061  Score=52.05  Aligned_cols=102  Identities=19%  Similarity=0.162  Sum_probs=65.6

Q ss_pred             HHHhCCCCCCCeEEEeCCCC-CHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------C
Q psy2408          80 MINKTSITKGQRFIDIGCGF-GLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------P  151 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~  151 (298)
                      .++...+.++.+||=+|+|. |..+..+++. .+++|+++|.+++.++.+++.    +..   .++...-.+.      -
T Consensus       155 ~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~----Ga~---~~i~~~~~~~~~~v~~~  227 (348)
T 4eez_A          155 AIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI----GAD---VTINSGDVNPVDEIKKI  227 (348)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT----TCS---EEEEC-CCCHHHHHHHH
T ss_pred             eecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc----CCe---EEEeCCCCCHHHHhhhh
Confidence            34566778999999999986 4555555554 478999999999887777654    322   2222211111      0


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .....+|.++...     .....+....++|+++|++++...
T Consensus       228 t~g~g~d~~~~~~-----~~~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          228 TGGLGVQSAIVCA-----VARIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             TTSSCEEEEEECC-----SCHHHHHHHHHTEEEEEEEEECCC
T ss_pred             cCCCCceEEEEec-----cCcchhheeheeecCCceEEEEec
Confidence            1223566665422     233678888999999999887644

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.28  E-value=0.01  Score=50.58  Aligned_cols=97  Identities=15%  Similarity=0.224  Sum_probs=68.3

Q ss_pred             CCCCCCeEEEeCCCC-CHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC------CCCCC
Q psy2408          85 SITKGQRFIDIGCGF-GLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP------FDNDS  156 (298)
Q Consensus        85 ~~~~~~~vLDiGcG~-G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~  156 (298)
                      .+.++.+||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++.    |..   .++..+- ++.      .....
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l----Ga~---~~i~~~~-~~~~~v~~~t~g~g  239 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV----GAD---AAVKSGA-GAADAIRELTGGQG  239 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT----TCS---EEEECST-THHHHHHHHHGGGC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCC---EEEcCCC-cHHHHHHHHhCCCC
Confidence            568899999999976 77788888776 78999999999988888653    432   2232221 110      01237


Q ss_pred             eeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         157 FDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +|+|+-     ....+..+..+.++|+++|++++....
T Consensus       240 ~d~v~d-----~~G~~~~~~~~~~~l~~~G~iv~~G~~  272 (345)
T 3jv7_A          240 ATAVFD-----FVGAQSTIDTAQQVVAVDGHISVVGIH  272 (345)
T ss_dssp             EEEEEE-----SSCCHHHHHHHHHHEEEEEEEEECSCC
T ss_pred             CeEEEE-----CCCCHHHHHHHHHHHhcCCEEEEECCC
Confidence            898864     333446788999999999999886543

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=96.28  E-value=0.0051  Score=52.81  Aligned_cols=97  Identities=12%  Similarity=0.142  Sum_probs=65.8

Q ss_pred             HhCCCCCC------CeEEEeCCCC-CHHH-HHHH-HhcCCe-EEEEeCCHH---HHHHHHHHHHhcCCCCceEEEECCCC
Q psy2408          82 NKTSITKG------QRFIDIGCGF-GLSG-IRLA-KAKGCR-VDGITISKF---QQESAMKTAKAEGLLDKVNFLHGDAL  148 (298)
Q Consensus        82 ~~~~~~~~------~~vLDiGcG~-G~~~-~~l~-~~~~~~-v~~vD~s~~---~l~~a~~~~~~~~~~~~i~~~~~d~~  148 (298)
                      +..++.++      .+||-+|+|. |..+ ..++ +..|++ |+++|.+++   .++.+++.    |.    ..+  |..
T Consensus       160 ~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~l----Ga----~~v--~~~  229 (357)
T 2b5w_A          160 EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL----DA----TYV--DSR  229 (357)
T ss_dssp             HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHT----TC----EEE--ETT
T ss_pred             HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHc----CC----ccc--CCC
Confidence            44455788      9999999865 7777 7888 767887 999999887   77777542    32    222  322


Q ss_pred             CCCCC-----CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         149 NLPFD-----NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       149 ~~~~~-----~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +..+.     .+.+|+|+-.     ...+..+..+.++|+++|+++....
T Consensus       230 ~~~~~~i~~~~gg~Dvvid~-----~g~~~~~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          230 QTPVEDVPDVYEQMDFIYEA-----TGFPKHAIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             TSCGGGHHHHSCCEEEEEEC-----SCCHHHHHHHHHHEEEEEEEEECCC
T ss_pred             ccCHHHHHHhCCCCCEEEEC-----CCChHHHHHHHHHHhcCCEEEEEeC
Confidence            21110     1368988643     3333578888999999999887644

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.26  E-value=0.017  Score=49.43  Aligned_cols=100  Identities=17%  Similarity=0.154  Sum_probs=67.8

Q ss_pred             HHhCCCCCCCeEEEeC-CC-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC
Q psy2408          81 INKTSITKGQRFIDIG-CG-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD  153 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~  153 (298)
                      .+..++.++.+||-.| +| .|..+..+++..|++|+++|.+++.++.+++.    |..   .++..+-.++.     ..
T Consensus       160 ~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~~~~~~~~~~~~~~~~~~  232 (353)
T 4dup_A          160 FQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERL----GAK---RGINYRSEDFAAVIKAET  232 (353)
T ss_dssp             TTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC---EEEeCCchHHHHHHHHHh
Confidence            3567788999999995 34 37777777877799999999999988888753    321   22222211110     01


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ...+|+|+.+..-      ..+....+.|+++|++++...
T Consensus       233 ~~g~Dvvid~~g~------~~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          233 GQGVDIILDMIGA------AYFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             SSCEEEEEESCCG------GGHHHHHHTEEEEEEEEECCC
T ss_pred             CCCceEEEECCCH------HHHHHHHHHhccCCEEEEEEe
Confidence            3479998865432      256677889999999887643

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.24  E-value=0.0091  Score=51.31  Aligned_cols=102  Identities=22%  Similarity=0.251  Sum_probs=67.1

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC-CC--CCCCCC
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL-NL--PFDNDS  156 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~-~~--~~~~~~  156 (298)
                      +...++.++.+||-+|+|. |..+..+++..|++|+++|.+++.++.+++.    |..   .++..+-. ++  ... +.
T Consensus       172 l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~v~~~~~~~~~~~~~~-~~  243 (360)
T 1piw_A          172 LVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYF-DT  243 (360)
T ss_dssp             HHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSC-SC
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc----CCC---EEEcCcCchHHHHHhh-cC
Confidence            3446788999999999864 7777777777799999999999888887653    321   22222111 11  111 47


Q ss_pred             eeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         157 FDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +|+|+-.....   .+..+..+.++|+++|+++....
T Consensus       244 ~D~vid~~g~~---~~~~~~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          244 FDLIVVCASSL---TDIDFNIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             EEEEEECCSCS---TTCCTTTGGGGEEEEEEEEECCC
T ss_pred             CCEEEECCCCC---cHHHHHHHHHHhcCCCEEEEecC
Confidence            99997543320   01234567789999999887543

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.20  E-value=0.025  Score=47.81  Aligned_cols=88  Identities=11%  Similarity=0.066  Sum_probs=62.0

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcC--Ce-E-EEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---CCCCCeeEE
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKG--CR-V-DGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---FDNDSFDGG  160 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~--~~-v-~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V  160 (298)
                      ...+++|+-||.|.++.-+.+ .|  .+ + .++|+++..++..+.++..      . +++.|+.++.   ++...+|++
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~-aG~~~~~v~~a~e~d~~a~~ty~~N~~~------~-~~~~DI~~~~~~~i~~~~~Dil   80 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYER-SSININATFIPFDINEIANKIYSKNFKE------E-VQVKNLDSISIKQIESLNCNTW   80 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHH-SSCCCCEEEEEECCCHHHHHHHHHHHCC------C-CBCCCTTTCCHHHHHHTCCCEE
T ss_pred             CCCEEEEECCChhHHHHHHHH-cCCCceEEEEEEECCHHHHHHHHHHCCC------C-cccCChhhcCHHHhccCCCCEE
Confidence            346999999999999988887 44  34 5 6999999998888877632      1 5678888874   222368999


Q ss_pred             Eeccccccc-----------ChH--HHHHHHhh-ccc
Q psy2408         161 WFFESIFHM-----------NHS--AALNEARR-VLK  183 (298)
Q Consensus       161 ~~~~~l~~~-----------~~~--~~l~~~~r-~Lk  183 (298)
                      +...-...+           .++  .++.++.+ +++
T Consensus        81 ~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~  117 (327)
T 3qv2_A           81 FMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILP  117 (327)
T ss_dssp             EECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGG
T ss_pred             EecCCccCcccccCCCCCCCccccchhHHHHHHHHHH
Confidence            975444433           233  56777777 553

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.17  E-value=0.031  Score=47.55  Aligned_cols=95  Identities=14%  Similarity=0.119  Sum_probs=66.4

Q ss_pred             CCCCCCCeEEEeCC--CCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--------CC
Q psy2408          84 TSITKGQRFIDIGC--GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--------FD  153 (298)
Q Consensus        84 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~  153 (298)
                      .++.++.+||-.|+  |.|..+..+++..|++|+++|.+++.++.+++.    +..   .++  |..+..        ..
T Consensus       162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----ga~---~~~--d~~~~~~~~~~~~~~~  232 (343)
T 2eih_A          162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL----GAD---ETV--NYTHPDWPKEVRRLTG  232 (343)
T ss_dssp             SCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EEE--ETTSTTHHHHHHHHTT
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CCC---EEE--cCCcccHHHHHHHHhC
Confidence            47788999999998  457888888887789999999999988887643    321   122  222211        11


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ...+|+|+.+.. .     ..+..+.++|+++|+++....
T Consensus       233 ~~~~d~vi~~~g-~-----~~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          233 GKGADKVVDHTG-A-----LYFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             TTCEEEEEESSC-S-----SSHHHHHHHEEEEEEEEESSC
T ss_pred             CCCceEEEECCC-H-----HHHHHHHHhhccCCEEEEEec
Confidence            247999986543 1     356677889999999887543

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.15  E-value=0.028  Score=48.05  Aligned_cols=98  Identities=16%  Similarity=0.254  Sum_probs=65.3

Q ss_pred             HhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCC
Q psy2408          82 NKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFD  153 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~  153 (298)
                      +..++.++.+||-.|+ | .|..+..+++..|++|++++.+++.++.+++.    +..   .++..+-.++      ...
T Consensus       164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~---~~~d~~~~~~~~~~~~~~~  236 (351)
T 1yb5_A          164 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN----GAH---EVFNHREVNYIDKIKKYVG  236 (351)
T ss_dssp             TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS---EEEETTSTTHHHHHHHHHC
T ss_pred             HhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHc----CCC---EEEeCCCchHHHHHHHHcC
Confidence            4567889999999997 3 46667777776789999999999887766432    321   1222211111      011


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ...+|+|+.+..-      ..+....++|+++|++++..
T Consensus       237 ~~~~D~vi~~~G~------~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          237 EKGIDIIIEMLAN------VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             TTCEEEEEESCHH------HHHHHHHHHEEEEEEEEECC
T ss_pred             CCCcEEEEECCCh------HHHHHHHHhccCCCEEEEEe
Confidence            2369999765432      35667889999999988764

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=96.14  E-value=0.027  Score=50.00  Aligned_cols=97  Identities=15%  Similarity=0.156  Sum_probs=67.1

Q ss_pred             CCCCCCCeEEEeCC-CC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------
Q psy2408          84 TSITKGQRFIDIGC-GF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------  151 (298)
Q Consensus        84 ~~~~~~~~vLDiGc-G~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------  151 (298)
                      ..+.++.+||-+|+ |. |..+..+++..|+++++++.+++.++.+++.    |..   .++...-.++.          
T Consensus       224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~d~~~~~~~~~~~~  296 (456)
T 3krt_A          224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAM----GAE---AIIDRNAEGYRFWKDENTQDP  296 (456)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCC---EEEETTTTTCCSEEETTEECH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhh----CCc---EEEecCcCcccccccccccch
Confidence            57789999999997 53 7888888887899999999999888888654    321   22222111110          


Q ss_pred             -------------CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         152 -------------FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       152 -------------~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                                   .....+|+|+-+-     .. ..+....++|+++|++++...
T Consensus       297 ~~~~~~~~~i~~~t~g~g~Dvvid~~-----G~-~~~~~~~~~l~~~G~iv~~G~  345 (456)
T 3krt_A          297 KEWKRFGKRIRELTGGEDIDIVFEHP-----GR-ETFGASVFVTRKGGTITTCAS  345 (456)
T ss_dssp             HHHHHHHHHHHHHHTSCCEEEEEECS-----CH-HHHHHHHHHEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEcC-----Cc-hhHHHHHHHhhCCcEEEEEec
Confidence                         1124799887432     22 567788899999999988543

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.13  E-value=0.03  Score=47.63  Aligned_cols=101  Identities=17%  Similarity=0.098  Sum_probs=67.4

Q ss_pred             HHHhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCCCCC-----
Q psy2408          80 MINKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DALNLP-----  151 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~~~-----  151 (298)
                      +.+..++.++.+||-.|+ | .|..+..+++..|++|+++|.+++.++.+++.   .|..   .++.. +..++.     
T Consensus       147 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~---~g~~---~~~d~~~~~~~~~~~~~  220 (345)
T 2j3h_A          147 FYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTK---FGFD---DAFNYKEESDLTAALKR  220 (345)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---SCCS---EEEETTSCSCSHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCc---eEEecCCHHHHHHHHHH
Confidence            335677889999999997 3 47777777776789999999999887777532   2321   12221 111110     


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ...+.+|+|+.+..     . ..+....++|+++|++++..
T Consensus       221 ~~~~~~d~vi~~~g-----~-~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          221 CFPNGIDIYFENVG-----G-KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             HCTTCEEEEEESSC-----H-HHHHHHHTTEEEEEEEEECC
T ss_pred             HhCCCCcEEEECCC-----H-HHHHHHHHHHhcCCEEEEEc
Confidence            01246999875433     2 46788889999999988754

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.12  E-value=0.015  Score=54.61  Aligned_cols=125  Identities=18%  Similarity=0.193  Sum_probs=79.6

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc-------------CCeEEEEeC---CHHHHHHHHH-----------HHHhcC-----
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK-------------GCRVDGITI---SKFQQESAMK-----------TAKAEG-----  135 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~-------------~~~v~~vD~---s~~~l~~a~~-----------~~~~~~-----  135 (298)
                      +..+|+|+|.|+|.....+.+..             ..+++.++.   +.+.+..+-.           ......     
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            45799999999999877765531             146899998   5555554322           222111     


Q ss_pred             -----CC---CceEEEECCCCCC-C-CC---CCCeeEEEecccccc-cChH---HHHHHHhhcccCCcEEEEEeCCCCCC
Q psy2408         136 -----LL---DKVNFLHGDALNL-P-FD---NDSFDGGWFFESIFH-MNHS---AALNEARRVLKSGSILTLTDLPLLSV  198 (298)
Q Consensus       136 -----~~---~~i~~~~~d~~~~-~-~~---~~~fD~V~~~~~l~~-~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~  198 (298)
                           +.   -.+++..+|+.+. + ++   +..+|+++.-..--. -++.   .++..+.++++|||.+.-.  .    
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~--~----  211 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF--T----  211 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES--C----
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec--c----
Confidence                 01   1456777887542 2 22   468999987442211 1222   8999999999999986532  1    


Q ss_pred             CCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEE
Q psy2408         199 SKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                                          ....+++.|.++||.+....
T Consensus       212 --------------------~~~~vr~~l~~aGf~~~~~~  231 (689)
T 3pvc_A          212 --------------------AAGFVRRGLQQAGFNVTKVK  231 (689)
T ss_dssp             --------------------CCHHHHHHHHHTTCEEEEEE
T ss_pred             --------------------CcHHHHHHHHhCCeEEEecc
Confidence                                12367788899999887755

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.11  E-value=0.021  Score=49.36  Aligned_cols=70  Identities=16%  Similarity=0.088  Sum_probs=53.9

Q ss_pred             CeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC--------CCCCeeEE
Q psy2408          90 QRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF--------DNDSFDGG  160 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~fD~V  160 (298)
                      .+|||+-||.|.++.-+.+ .|. .+.++|+++..++..+.++.      +..++++|+.++..        ....+|+|
T Consensus         3 ~~vidLFsG~GGlslG~~~-aG~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i   75 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAAR-AGFDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDGI   75 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHH-HTCEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred             CeEEEEccCcCHHHHHHHH-CCCcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence            5899999999999998887 466 46799999998887776642      36788899887631        23679999


Q ss_pred             Eecccc
Q psy2408         161 WFFESI  166 (298)
Q Consensus       161 ~~~~~l  166 (298)
                      +...-.
T Consensus        76 ~ggpPC   81 (376)
T 3g7u_A           76 IGGPPC   81 (376)
T ss_dssp             EECCCC
T ss_pred             EecCCC
Confidence            975443

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.09  E-value=0.034  Score=46.94  Aligned_cols=99  Identities=16%  Similarity=0.169  Sum_probs=66.0

Q ss_pred             HhCCCCCCCeEEEeCC--CCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCC
Q psy2408          82 NKTSITKGQRFIDIGC--GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFD  153 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~  153 (298)
                      +..++.++.+||-.|+  |.|..+..+++..|++|+++|.+++.++.+++.    +..   .++..+-.+.      ...
T Consensus       134 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~  206 (327)
T 1qor_A          134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW---QVINYREEDLVERLKEITG  206 (327)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTT
T ss_pred             HhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EEEECCCccHHHHHHHHhC
Confidence            3567889999999993  346666667766789999999999888877653    321   1222111111      011


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ...+|+|+.+..      ...++.+.++|+++|++++...
T Consensus       207 ~~~~D~vi~~~g------~~~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          207 GKKVRVVYDSVG------RDTWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             TCCEEEEEECSC------GGGHHHHHHTEEEEEEEEECCC
T ss_pred             CCCceEEEECCc------hHHHHHHHHHhcCCCEEEEEec
Confidence            246999986543      2456778899999999887643

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=96.08  E-value=0.064  Score=46.24  Aligned_cols=65  Identities=17%  Similarity=0.118  Sum_probs=44.6

Q ss_pred             cHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHH
Q psy2408          68 NFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--------GCRVDGITISKFQQESAMKTAK  132 (298)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--------~~~v~~vD~s~~~l~~a~~~~~  132 (298)
                      .+.+...+....+.+.++.+.+.+|+|+|.|.|.++..+.+..        ..+++.||+|+...+.-++.+.
T Consensus        60 ~FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  132 (387)
T 1zkd_A           60 MFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  132 (387)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence            3444444444444455655556689999999999988776531        2489999999988776555543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.08  E-value=0.02  Score=53.53  Aligned_cols=125  Identities=17%  Similarity=0.117  Sum_probs=78.0

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc-----------C--CeEEEEeC---CHHHHHHHHH-----------HHHhcCC--C-
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK-----------G--CRVDGITI---SKFQQESAMK-----------TAKAEGL--L-  137 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~-----------~--~~v~~vD~---s~~~l~~a~~-----------~~~~~~~--~-  137 (298)
                      +.-+|||+|.|+|.......+..           .  .++++++.   +.+.+..+-.           .......  + 
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            44699999999999877664431           1  36899998   7777764433           1211111  0 


Q ss_pred             ----------CceEEEECCCCCC-C-CC---CCCeeEEEeccccccc-ChH---HHHHHHhhcccCCcEEEEEeCCCCCC
Q psy2408         138 ----------DKVNFLHGDALNL-P-FD---NDSFDGGWFFESIFHM-NHS---AALNEARRVLKSGSILTLTDLPLLSV  198 (298)
Q Consensus       138 ----------~~i~~~~~d~~~~-~-~~---~~~fD~V~~~~~l~~~-~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~  198 (298)
                                -.+++..+|+.+. + ++   ...||+++.-..--.. ++.   .+++.+.++++|||.+.-...     
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~-----  220 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS-----  220 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCC-----
T ss_pred             ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccC-----
Confidence                      1244566776542 1 11   3679999874422222 222   899999999999998654211     


Q ss_pred             CCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEE
Q psy2408         199 SKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                                           ...+++.|.++||.+....
T Consensus       221 ---------------------~~~vr~~L~~aGf~v~~~~  239 (676)
T 3ps9_A          221 ---------------------AGFVRRGLQDAGFTMQKRK  239 (676)
T ss_dssp             ---------------------CHHHHHHHHHHTCEEEEEE
T ss_pred             ---------------------cHHHHHHHHhCCeEEEecc
Confidence                                 1356778888898877654

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=96.07  E-value=0.033  Score=47.67  Aligned_cols=99  Identities=12%  Similarity=-0.030  Sum_probs=65.5

Q ss_pred             HhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCC
Q psy2408          82 NKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFD  153 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~  153 (298)
                      +..++.++.+||-.|+ | .|..+..++...|++|+++|.+++.++.+++.    +..   .++..+-.+.      ...
T Consensus       156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~  228 (354)
T 2j8z_A          156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL----GAA---AGFNYKKEDFSEATLKFTK  228 (354)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTT
T ss_pred             HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCc---EEEecCChHHHHHHHHHhc
Confidence            5567889999999984 3 46666677776789999999999888887543    321   1222211111      012


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ...+|+|+.+..-      ..+....++|+++|++++...
T Consensus       229 ~~~~d~vi~~~G~------~~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          229 GAGVNLILDCIGG------SYWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             TSCEEEEEESSCG------GGHHHHHHHEEEEEEEEECCC
T ss_pred             CCCceEEEECCCc------hHHHHHHHhccCCCEEEEEec
Confidence            2469998765432      245677889999999887644

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=96.06  E-value=0.00076  Score=57.72  Aligned_cols=97  Identities=15%  Similarity=0.193  Sum_probs=65.0

Q ss_pred             hCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CCCC
Q psy2408          83 KTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FDND  155 (298)
Q Consensus        83 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~  155 (298)
                      ..++ ++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++. .     +  .++..+-.++.     ....
T Consensus       160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v~~~~~~~~~~~~~~~~~~  230 (343)
T 2dq4_A          160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-----D--RLVNPLEEDLLEVVRRVTGS  230 (343)
T ss_dssp             TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-----S--EEECTTTSCHHHHHHHHHSS
T ss_pred             hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-----H--hccCcCccCHHHHHHHhcCC
Confidence            6677 999999999864 6777777777788 999999998877766542 1     1  12211111110     0024


Q ss_pred             CeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         156 SFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .+|+|+-.-     ..+..++...++|+++|+++....
T Consensus       231 g~D~vid~~-----g~~~~~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          231 GVEVLLEFS-----GNEAAIHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             CEEEEEECS-----CCHHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCEEEECC-----CCHHHHHHHHHHHhcCCEEEEEec
Confidence            699986432     334577888999999999887543

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.02  E-value=0.012  Score=50.35  Aligned_cols=100  Identities=20%  Similarity=0.244  Sum_probs=67.1

Q ss_pred             HHHhCCCCCCCeEEEeCCC--CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC---CCC---
Q psy2408          80 MINKTSITKGQRFIDIGCG--FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL---NLP---  151 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~---~~~---  151 (298)
                      .+....+.++.+||-+|++  .|..+..+++..|++|+++|.+++.++.+++    .+..   .++  |..   ++.   
T Consensus       161 ~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~g~~---~~~--d~~~~~~~~~~~  231 (347)
T 2hcy_A          161 ALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----IGGE---VFI--DFTKEKDIVGAV  231 (347)
T ss_dssp             HHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----TTCC---EEE--ETTTCSCHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----cCCc---eEE--ecCccHhHHHHH
Confidence            3455577899999999983  4666767777678999999999887776654    2321   122  332   110   


Q ss_pred             --CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         152 --FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       152 --~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                        ...+.+|+|+.+..     ....++.+.+.|+++|+++....
T Consensus       232 ~~~~~~~~D~vi~~~g-----~~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          232 LKATDGGAHGVINVSV-----SEAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             HHHHTSCEEEEEECSS-----CHHHHHHHTTSEEEEEEEEECCC
T ss_pred             HHHhCCCCCEEEECCC-----cHHHHHHHHHHHhcCCEEEEEeC
Confidence              00126899875433     23678889999999999887644

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=95.96  E-value=0.055  Score=46.01  Aligned_cols=106  Identities=19%  Similarity=0.128  Sum_probs=70.8

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---  151 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---  151 (298)
                      .........+.++.+||-.|+|. |.++..+++..|+ .++++|.+++.++.+++.    |..   .++...-.+.+   
T Consensus       149 ~~~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~  221 (346)
T 4a2c_A          149 GLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF----GAM---QTFNSSEMSAPQMQ  221 (346)
T ss_dssp             HHHHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEETTTSCHHHHH
T ss_pred             HHHHHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc----CCe---EEEeCCCCCHHHHH
Confidence            34456677788999999999986 6667777776776 568999999988887654    422   23322211110   


Q ss_pred             ---CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 ---FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 ---~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                         .....+|+|+-     ....+..+....++|+++|++++....
T Consensus       222 ~~~~~~~g~d~v~d-----~~G~~~~~~~~~~~l~~~G~~v~~g~~  262 (346)
T 4a2c_A          222 SVLRELRFNQLILE-----TAGVPQTVELAVEIAGPHAQLALVGTL  262 (346)
T ss_dssp             HHHGGGCSSEEEEE-----CSCSHHHHHHHHHHCCTTCEEEECCCC
T ss_pred             HhhcccCCcccccc-----cccccchhhhhhheecCCeEEEEEecc
Confidence               11245777653     233446788889999999999886544

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=95.95  E-value=0.063  Score=45.40  Aligned_cols=97  Identities=14%  Similarity=0.124  Sum_probs=66.7

Q ss_pred             HhCCCCCCCeEEEeCC--CCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--------
Q psy2408          82 NKTSITKGQRFIDIGC--GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--------  151 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--------  151 (298)
                      +..++.++.+||-.|+  |.|..+..++...|++|+++|.+++.++.+++.    +..   .++  |..+..        
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----g~~---~~~--d~~~~~~~~~i~~~  209 (333)
T 1wly_A          139 QTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL----GCH---HTI--NYSTQDFAEVVREI  209 (333)
T ss_dssp             TTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EEE--ETTTSCHHHHHHHH
T ss_pred             HhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCC---EEE--ECCCHHHHHHHHHH
Confidence            4567889999999995  457777777776789999999999888877653    321   122  222211        


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .....+|+|+.+..-      ..++.+.++|+++|+++....
T Consensus       210 ~~~~~~d~vi~~~g~------~~~~~~~~~l~~~G~iv~~g~  245 (333)
T 1wly_A          210 TGGKGVDVVYDSIGK------DTLQKSLDCLRPRGMCAAYGH  245 (333)
T ss_dssp             HTTCCEEEEEECSCT------TTHHHHHHTEEEEEEEEECCC
T ss_pred             hCCCCCeEEEECCcH------HHHHHHHHhhccCCEEEEEec
Confidence            112469999865432      356778899999999887644

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.90  E-value=0.66  Score=43.45  Aligned_cols=164  Identities=15%  Similarity=0.131  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-c--------CCeEEEEeCCHHHHHHHHHHHHhcC-------
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-K--------GCRVDGITISKFQQESAMKTAKAEG-------  135 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--------~~~v~~vD~s~~~l~~a~~~~~~~~-------  135 (298)
                      +.+.+++.+++.....+...|+-+|||.=.....+... .        +.+++=+|..+ .++.=++.+....       
T Consensus        91 ~~d~~v~~fl~~~~~~~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~-v~~~K~~~l~~~~~l~~~~~  169 (695)
T 2zwa_A           91 AIRSRLNSIIEQTPQDKKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSD-LLKIKIELIKTIPELSKIIG  169 (695)
T ss_dssp             HHHHHHHHHHHHSCTTSEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHH-HHHHHHHHHHHCHHHHHHTT
T ss_pred             HHHHHHHHHHhcccCCCCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHH-HHHHHHHHHHcChHHHHhhc
Confidence            34556666665541124569999999998888888653 1        33555556533 3332222232110       


Q ss_pred             -------CC---------CceEEEECCCCCCC----------C-CCCCeeEEEecccccccChH---HHHHHHhhcccCC
Q psy2408         136 -------LL---------DKVNFLHGDALNLP----------F-DNDSFDGGWFFESIFHMNHS---AALNEARRVLKSG  185 (298)
Q Consensus       136 -------~~---------~~i~~~~~d~~~~~----------~-~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~Lkpg  185 (298)
                             ..         ++..++..|+.+..          + ..+..-++++-.++.+++..   .+|+.+.+.  |+
T Consensus       170 ~~~~~~~~~~~~~~~~~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~  247 (695)
T 2zwa_A          170 LSEDKDYVDDSNVDFLTTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--EN  247 (695)
T ss_dssp             CCSSCSSCSCTTCCCEECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SS
T ss_pred             cccccccccccccccccCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CC
Confidence                   00         36789999998731          2 33455677888999999887   888888764  67


Q ss_pred             cEEEEEeCCCCCCCCChhHHHH---HHHhh-----cccCCCCcchHHHHHHhCCCcEEEEEe
Q psy2408         186 SILTLTDLPLLSVSKNDNKFKE---YVKKN-----IHSNFILVEHYPDLLNKSGFELIKIDD  239 (298)
Q Consensus       186 G~l~i~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~l~~~Gf~~~~~~~  239 (298)
                      |.+++.+...+.... ......   .....     ....+.++++..+.|.++||..+...+
T Consensus       248 ~~~~~~e~~~~~~~~-d~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~  308 (695)
T 2zwa_A          248 SHFIILEQLIPKGPF-EPFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGD  308 (695)
T ss_dssp             EEEEEEEECCTTCTT-SHHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEE
T ss_pred             ceEEEEEeecCCCCC-ChHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceee
Confidence            777776654332211 111111   11111     112355688899999999998776654

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.89  E-value=0.023  Score=48.92  Aligned_cols=94  Identities=15%  Similarity=0.111  Sum_probs=63.5

Q ss_pred             hCCCC--C-------CCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCH---HHHHHHHHHHHhcCCCCceEEEECCCCC
Q psy2408          83 KTSIT--K-------GQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISK---FQQESAMKTAKAEGLLDKVNFLHGDALN  149 (298)
Q Consensus        83 ~~~~~--~-------~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~---~~l~~a~~~~~~~~~~~~i~~~~~d~~~  149 (298)
                      ..+++  +       +.+||-+|+|. |..+..+++..|++|+++|.++   +.++.+++.    |.    ..+  | .+
T Consensus       166 ~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~----ga----~~v--~-~~  234 (366)
T 2cdc_A          166 QKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEET----KT----NYY--N-SS  234 (366)
T ss_dssp             GGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHH----TC----EEE--E-CT
T ss_pred             ccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHh----CC----cee--c-hH
Confidence            55666  7       99999999853 5666666666789999999987   777766543    32    222  2 22


Q ss_pred             CCCC------CCCeeEEEecccccccChHHHH-HHHhhcccCCcEEEEEeC
Q psy2408         150 LPFD------NDSFDGGWFFESIFHMNHSAAL-NEARRVLKSGSILTLTDL  193 (298)
Q Consensus       150 ~~~~------~~~fD~V~~~~~l~~~~~~~~l-~~~~r~LkpgG~l~i~~~  193 (298)
                       .+.      .+.+|+|+....     .+..+ +.+.++|+++|++++...
T Consensus       235 -~~~~~~~~~~~~~d~vid~~g-----~~~~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          235 -NGYDKLKDSVGKFDVIIDATG-----ADVNILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             -TCSHHHHHHHCCEEEEEECCC-----CCTHHHHHHGGGEEEEEEEEECSC
T ss_pred             -HHHHHHHHhCCCCCEEEECCC-----ChHHHHHHHHHHHhcCCEEEEEec
Confidence             211      146999875433     22356 889999999999887643

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=95.86  E-value=0.041  Score=46.81  Aligned_cols=96  Identities=18%  Similarity=0.170  Sum_probs=66.3

Q ss_pred             HHhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC------C
Q psy2408          81 INKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP------F  152 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~------~  152 (298)
                      .+...+.++.+||-+|+ | .|..+..+++..|++|+++ .+++.++.+++.    |.    ..+. +-.++.      .
T Consensus       143 ~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l----Ga----~~i~-~~~~~~~~~~~~~  212 (343)
T 3gaz_A          143 VDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL----GA----TPID-ASREPEDYAAEHT  212 (343)
T ss_dssp             TTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH----TS----EEEE-TTSCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc----CC----CEec-cCCCHHHHHHHHh
Confidence            36778889999999994 4 3788888888789999999 888887777653    32    1222 212110      1


Q ss_pred             CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ....+|+|+-+..     . ..+....++|+++|+++...
T Consensus       213 ~~~g~D~vid~~g-----~-~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          213 AGQGFDLVYDTLG-----G-PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             TTSCEEEEEESSC-----T-HHHHHHHHHEEEEEEEEESC
T ss_pred             cCCCceEEEECCC-----c-HHHHHHHHHHhcCCeEEEEc
Confidence            2247999875332     1 46777888999999988754

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=95.76  E-value=0.01  Score=50.33  Aligned_cols=102  Identities=12%  Similarity=0.146  Sum_probs=65.7

Q ss_pred             HhCCCCCCC-eEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-CCCCCCe
Q psy2408          82 NKTSITKGQ-RFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-PFDNDSF  157 (298)
Q Consensus        82 ~~~~~~~~~-~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~f  157 (298)
                      ...++.++. +||-.|+ | .|..+..+++..|++|++++.+++.++.+++.    |...-+.....+.... ....+.+
T Consensus       143 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~l----Ga~~v~~~~~~~~~~~~~~~~~~~  218 (330)
T 1tt7_A          143 EQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GASEVISREDVYDGTLKALSKQQW  218 (330)
T ss_dssp             HHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCSEEEEHHHHCSSCCCSSCCCCE
T ss_pred             HhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCcEEEECCCchHHHHHHhhcCCc
Confidence            345677775 8999997 4 37777888887799999999998777777653    3211111101111111 1223569


Q ss_pred             eEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         158 DGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       158 D~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      |+|+-+-.     . ..+....++|+++|++++...
T Consensus       219 d~vid~~g-----~-~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          219 QGAVDPVG-----G-KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             EEEEESCC-----T-HHHHHHHTTEEEEEEEEECCC
T ss_pred             cEEEECCc-----H-HHHHHHHHhhcCCCEEEEEec
Confidence            98875432     2 467788899999999887643

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=95.67  E-value=0.011  Score=50.11  Aligned_cols=99  Identities=15%  Similarity=0.245  Sum_probs=64.1

Q ss_pred             HhCCCCCCC-eEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CC-CC-C-CCCC
Q psy2408          82 NKTSITKGQ-RFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DA-LN-L-PFDN  154 (298)
Q Consensus        82 ~~~~~~~~~-~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~-~~-~-~~~~  154 (298)
                      ...++.++. +||-+|+ | .|..+..+++..|++|++++.+++.++.+++.    |..   .++.. +. .+ . ....
T Consensus       142 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~l----Ga~---~~i~~~~~~~~~~~~~~~  214 (328)
T 1xa0_A          142 EEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL----GAK---EVLAREDVMAERIRPLDK  214 (328)
T ss_dssp             HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT----TCS---EEEECC---------CCS
T ss_pred             hhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc----CCc---EEEecCCcHHHHHHHhcC
Confidence            445677775 8999997 4 47778888887799999999998877777542    322   11211 11 01 1 1223


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +.+|+|+-+-.     . ..+....++|+++|++++...
T Consensus       215 ~~~d~vid~~g-----~-~~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          215 QRWAAAVDPVG-----G-RTLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             CCEEEEEECST-----T-TTHHHHHHTEEEEEEEEECSC
T ss_pred             CcccEEEECCc-----H-HHHHHHHHhhccCCEEEEEee
Confidence            47999875432     1 256678889999999887543

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.27  E-value=0.0088  Score=51.33  Aligned_cols=101  Identities=26%  Similarity=0.295  Sum_probs=64.6

Q ss_pred             HHhCCCC-CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC-CCC-CCCCCC
Q psy2408          81 INKTSIT-KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA-LNL-PFDNDS  156 (298)
Q Consensus        81 ~~~~~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~-~~~-~~~~~~  156 (298)
                      +....+. ++.+||-+|+|. |..+..+++..|++|+++|.+++.++.+++.   .|..   .++..+- ..+ .. .+.
T Consensus       172 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~---lGa~---~vi~~~~~~~~~~~-~~g  244 (357)
T 2cf5_A          172 LSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQD---LGAD---DYVIGSDQAKMSEL-ADS  244 (357)
T ss_dssp             HHHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTT---SCCS---CEEETTCHHHHHHS-TTT
T ss_pred             HHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH---cCCc---eeeccccHHHHHHh-cCC
Confidence            4456677 899999999875 7777777777799999999998777666522   2322   1222110 001 01 146


Q ss_pred             eeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         157 FDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +|+|+-.-.-     +..+....++|+++|+++....
T Consensus       245 ~D~vid~~g~-----~~~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          245 LDYVIDTVPV-----HHALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             EEEEEECCCS-----CCCSHHHHTTEEEEEEEEECSC
T ss_pred             CCEEEECCCC-----hHHHHHHHHHhccCCEEEEeCC
Confidence            9998743321     1235567789999999887643

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=95.19  E-value=0.061  Score=47.54  Aligned_cols=100  Identities=13%  Similarity=0.062  Sum_probs=66.0

Q ss_pred             CCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----------
Q psy2408          84 TSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----------  150 (298)
Q Consensus        84 ~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----------  150 (298)
                      .++.++.+||-.|+ | .|..+..+++..|+++++++.+++.++.+++.    |...-+.....|+...           
T Consensus       216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~l----Ga~~~i~~~~~~~~~~~~~~~~~~~~~  291 (447)
T 4a0s_A          216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRAL----GCDLVINRAELGITDDIADDPRRVVET  291 (447)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCCCEEEHHHHTCCTTGGGCHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCCEEEecccccccccccccccccchh
Confidence            67889999999997 4 37777788887799999999999888877543    4321111111121100           


Q ss_pred             ---------CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         151 ---------PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       151 ---------~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                               ......+|+|+-+...      ..+....++|+++|++++...
T Consensus       292 ~~~~~~~v~~~~g~g~Dvvid~~G~------~~~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          292 GRKLAKLVVEKAGREPDIVFEHTGR------VTFGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHHHHHHHHHSSCCSEEEECSCH------HHHHHHHHHSCTTCEEEESCC
T ss_pred             hhHHHHHHHHHhCCCceEEEECCCc------hHHHHHHHHHhcCCEEEEEec
Confidence                     0002468998754332      356778889999999888643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.14  E-value=0.16  Score=36.96  Aligned_cols=90  Identities=12%  Similarity=0.011  Sum_probs=56.5

Q ss_pred             CCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEEec
Q psy2408          89 GQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGWFF  163 (298)
Q Consensus        89 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~  163 (298)
                      ..+|+=+|||. |..........|..|+++|.+++.++.+++    .    .+.++.+|..+..    ..-..+|+|++.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~----g~~~i~gd~~~~~~l~~a~i~~ad~vi~~   78 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----R----GVRAVLGNAANEEIMQLAHLECAKWLILT   78 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T----TCEEEESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c----CCCEEECCCCCHHHHHhcCcccCCEEEEE
Confidence            35899999864 433333333358899999999988877654    2    2678889987631    112467887653


Q ss_pred             ccccccChH---HHHHHHhhcccCCcEEEEE
Q psy2408         164 ESIFHMNHS---AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       164 ~~l~~~~~~---~~l~~~~r~LkpgG~l~i~  191 (298)
                           +++.   ..+-...+.+.|+..++..
T Consensus        79 -----~~~~~~n~~~~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           79 -----IPNGYEAGEIVASARAKNPDIEIIAR  104 (140)
T ss_dssp             -----CSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             -----CCChHHHHHHHHHHHHHCCCCeEEEE
Confidence                 2333   3344456667788876654

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.11  E-value=0.054  Score=45.79  Aligned_cols=67  Identities=24%  Similarity=0.142  Sum_probs=50.3

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC-CCCeeEEEecc
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD-NDSFDGGWFFE  164 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~  164 (298)
                      +.++||+.||.|.++..+.. .|. .+.++|+++..++..+.++...     .   ++|+.++... -..+|+|+...
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~-aG~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~~~~~D~l~~gp   79 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALES-CGAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKTIPDHDILCAGF   79 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHH-TTCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGGSCCCSEEEEEC
T ss_pred             CCcEEEECCCcCHHHHHHHH-CCCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhhCCCCCEEEECC
Confidence            56999999999999998887 455 5888999999999888886421     1   5777765311 13589998743

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=95.02  E-value=0.015  Score=50.27  Aligned_cols=94  Identities=19%  Similarity=0.069  Sum_probs=60.3

Q ss_pred             CCCCCeEEEeC-CCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---CCCCCeeEE
Q psy2408          86 ITKGQRFIDIG-CGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---FDNDSFDGG  160 (298)
Q Consensus        86 ~~~~~~vLDiG-cG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V  160 (298)
                      +.++.+||-.| +|. |..+..+++..|++|++++ +++.++.+++    .|..   .++..+-.++.   .....+|+|
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~~~~g~D~v  252 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRK----LGAD---DVIDYKSGSVEEQLKSLKPFDFI  252 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH----TTCS---EEEETTSSCHHHHHHTSCCBSEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHH----cCCC---EEEECCchHHHHHHhhcCCCCEE
Confidence            78899999999 453 7888888887789999998 6666655532    3422   22222111110   011468988


Q ss_pred             EecccccccChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         161 WFFESIFHMNHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       161 ~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +-+.     ... ..+....++|+++|+++...
T Consensus       253 id~~-----g~~~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          253 LDNV-----GGSTETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             EESS-----CTTHHHHGGGGBCSSSCCEEEESC
T ss_pred             EECC-----CChhhhhHHHHHhhcCCcEEEEeC
Confidence            6432     333 45677888999999988754

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=94.98  E-value=0.12  Score=44.17  Aligned_cols=100  Identities=17%  Similarity=0.103  Sum_probs=66.6

Q ss_pred             HHHhCCCCCC--CeEEEeCC-C-CCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---
Q psy2408          80 MINKTSITKG--QRFIDIGC-G-FGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---  151 (298)
Q Consensus        80 l~~~~~~~~~--~~vLDiGc-G-~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---  151 (298)
                      +.+..++.++  .+||-.|+ | .|..+..+++..|+ +|+++|.+++.++.+++.   .+..   .++  |..+..   
T Consensus       150 l~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~---~~~--d~~~~~~~~  221 (357)
T 2zb4_A          150 IQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD---AAI--NYKKDNVAE  221 (357)
T ss_dssp             HHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS---EEE--ETTTSCHHH
T ss_pred             HHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc---eEE--ecCchHHHH
Confidence            3366778889  99999998 3 36666666766788 999999998777766542   2321   122  222211   


Q ss_pred             ----CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         152 ----FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       152 ----~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                          ...+.+|+|+.+..-      ..+..+.++|+++|++++...
T Consensus       222 ~~~~~~~~~~d~vi~~~G~------~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          222 QLRESCPAGVDVYFDNVGG------NISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             HHHHHCTTCEEEEEESCCH------HHHHHHHHTEEEEEEEEECCC
T ss_pred             HHHHhcCCCCCEEEECCCH------HHHHHHHHHhccCcEEEEECC
Confidence                011269998765431      567788899999999887543

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=94.86  E-value=0.017  Score=49.71  Aligned_cols=101  Identities=26%  Similarity=0.252  Sum_probs=63.5

Q ss_pred             HHhCCCC-CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC-CC-CCCCCC
Q psy2408          81 INKTSIT-KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL-NL-PFDNDS  156 (298)
Q Consensus        81 ~~~~~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~-~~-~~~~~~  156 (298)
                      +....+. ++.+||-+|+|. |..+..+++..|++|++++.+++.++.+++.   .|..   .++..+-. .+ .. .+.
T Consensus       179 l~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---lGa~---~v~~~~~~~~~~~~-~~~  251 (366)
T 1yqd_A          179 LKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKN---FGAD---SFLVSRDQEQMQAA-AGT  251 (366)
T ss_dssp             HHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHT---SCCS---EEEETTCHHHHHHT-TTC
T ss_pred             HHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---cCCc---eEEeccCHHHHHHh-hCC
Confidence            3455677 899999999864 6667777776789999999998777665532   2321   22221100 01 01 146


Q ss_pred             eeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         157 FDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +|+|+......     ..++...++|+++|+++....
T Consensus       252 ~D~vid~~g~~-----~~~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          252 LDGIIDTVSAV-----HPLLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             EEEEEECCSSC-----CCSHHHHHHEEEEEEEEECCC
T ss_pred             CCEEEECCCcH-----HHHHHHHHHHhcCCEEEEEcc
Confidence            99987543221     234566788999999887543

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=94.69  E-value=0.026  Score=47.08  Aligned_cols=94  Identities=15%  Similarity=0.132  Sum_probs=62.9

Q ss_pred             hCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC-CCC--CCCCCCe
Q psy2408          83 KTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA-LNL--PFDNDSF  157 (298)
Q Consensus        83 ~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~-~~~--~~~~~~f  157 (298)
                      .. +.++.+||-+|+ | .|..+..+++..|++|+++|.+++.++.+++    .|..   .++..+- .++  ..  +.+
T Consensus       121 ~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~--~~~  190 (302)
T 1iz0_A          121 AQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAW--GGL  190 (302)
T ss_dssp             TT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHT--TSE
T ss_pred             hc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHh--cCc
Confidence            44 789999999997 3 4777777887778999999999888777754    2321   2222110 111  01  569


Q ss_pred             eEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         158 DGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       158 D~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      |+|+. ..-      ..++...++|+++|+++....
T Consensus       191 d~vid-~g~------~~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          191 DLVLE-VRG------KEVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             EEEEE-CSC------TTHHHHHTTEEEEEEEEEC--
T ss_pred             eEEEE-CCH------HHHHHHHHhhccCCEEEEEeC
Confidence            99876 322      356778899999999887543

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=94.58  E-value=0.16  Score=43.65  Aligned_cols=93  Identities=11%  Similarity=0.075  Sum_probs=61.6

Q ss_pred             CCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----CCCCCCeeE
Q psy2408          87 TKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----PFDNDSFDG  159 (298)
Q Consensus        87 ~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~  159 (298)
                      .++.+||-+|+ | .|..+..+++..|++|+++. +++.++.+++.    |..   .++...-.++     ....+.+|+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~v~~~t~g~~d~  234 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSR----GAE---EVFDYRAPNLAQTIRTYTKNNLRY  234 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHT----TCS---EEEETTSTTHHHHHHHHTTTCCCE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHc----CCc---EEEECCCchHHHHHHHHccCCccE
Confidence            78899999998 3 58888888887899999885 77777766543    431   2333221211     011245898


Q ss_pred             EEecccccccChHHHHHHHhhcc-cCCcEEEEEe
Q psy2408         160 GWFFESIFHMNHSAALNEARRVL-KSGSILTLTD  192 (298)
Q Consensus       160 V~~~~~l~~~~~~~~l~~~~r~L-kpgG~l~i~~  192 (298)
                      |+-     ....+..+..+.+.| +++|+++...
T Consensus       235 v~d-----~~g~~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          235 ALD-----CITNVESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             EEE-----SSCSHHHHHHHHHHSCTTCEEEEESS
T ss_pred             EEE-----CCCchHHHHHHHHHhhcCCCEEEEEe
Confidence            863     333445677788888 6999988754

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=94.50  E-value=0.092  Score=44.90  Aligned_cols=98  Identities=15%  Similarity=0.111  Sum_probs=57.8

Q ss_pred             HhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEE-eCCHH---HHHHHHHHHHhcCCCCceEEEEC------CCCC
Q psy2408          82 NKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGI-TISKF---QQESAMKTAKAEGLLDKVNFLHG------DALN  149 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~v-D~s~~---~l~~a~~~~~~~~~~~~i~~~~~------d~~~  149 (298)
                      ...++.++.+||-+|+ | .|..+..+++..|++++++ +.++.   ..+.++    ..|..   .++..      ++.+
T Consensus       161 ~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~----~lGa~---~vi~~~~~~~~~~~~  233 (357)
T 1zsy_A          161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK----SLGAE---HVITEEELRRPEMKN  233 (357)
T ss_dssp             HSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHH----HTTCS---EEEEHHHHHSGGGGG
T ss_pred             HHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHH----hcCCc---EEEecCcchHHHHHH
Confidence            4467889999999997 4 4888888888778876555 44322   234443    33432   22221      1222


Q ss_pred             CCCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         150 LPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       150 ~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +.-..+.+|+|+-.     ...+.+ ....++|+++|++++..
T Consensus       234 ~~~~~~~~Dvvid~-----~g~~~~-~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          234 FFKDMPQPRLALNC-----VGGKSS-TELLRQLARGGTMVTYG  270 (357)
T ss_dssp             TTSSSCCCSEEEES-----SCHHHH-HHHHTTSCTTCEEEECC
T ss_pred             HHhCCCCceEEEEC-----CCcHHH-HHHHHhhCCCCEEEEEe
Confidence            21111248988642     333323 45789999999988753

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=94.37  E-value=0.24  Score=43.23  Aligned_cols=61  Identities=18%  Similarity=0.128  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHh
Q psy2408          70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK------GCRVDGITISKFQQESAMKTAKA  133 (298)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~------~~~v~~vD~s~~~l~~a~~~~~~  133 (298)
                      .+...+....+.+..+   ..+|+|+|.|+|.++..+.+..      ..+++.||+|+.+.+.-++++..
T Consensus       122 Ge~la~~~~~~~~~~g---~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          122 AQTLARPVAQALDASG---TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             HHHHHHHHHHHHHHHT---CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC---CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            3333344444444443   4699999999999988886542      24899999999887777766653

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.24  E-value=0.023  Score=48.81  Aligned_cols=100  Identities=12%  Similarity=0.079  Sum_probs=59.6

Q ss_pred             CCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccc
Q psy2408          89 GQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIF  167 (298)
Q Consensus        89 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~  167 (298)
                      +.+||=+|+|. |..+..++...|++|+++|.+++.++.+.+....     .+.....+..++.-.-..+|+|+..-...
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~DvVI~~~~~~  241 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVLVP  241 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHHcCCCEEEECCCcC
Confidence            47999999964 5555555665788999999999888887765432     12222221111100012589998654332


Q ss_pred             ccChH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         168 HMNHS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       168 ~~~~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ....+ -+.+...+.++|||.++....
T Consensus       242 ~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          242 GRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             TSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             CCCCCeecCHHHHhhCCCCCEEEEEec
Confidence            21122 224456678899997766433

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.02  E-value=0.35  Score=36.74  Aligned_cols=90  Identities=19%  Similarity=0.175  Sum_probs=54.0

Q ss_pred             CCeEEEeCCCC-CHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC----CC-CCCCeeEEE
Q psy2408          89 GQRFIDIGCGF-GLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL----PF-DNDSFDGGW  161 (298)
Q Consensus        89 ~~~vLDiGcG~-G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~----~~-~~~~fD~V~  161 (298)
                      +.+|+=+|||. |.......... |..|+++|.+++.++.++.    .+    +.++.+|..+.    .. .-..+|+|+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~~~~~~ad~vi  110 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERILDTGHVKLVL  110 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTBCSCCCCCEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhccCCCCCCEEE
Confidence            56899998764 43333333335 8899999999987766543    23    45677776542    11 134688887


Q ss_pred             ecccccccChH---HHHHHHhhcccCCcEEEEE
Q psy2408         162 FFESIFHMNHS---AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       162 ~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~  191 (298)
                      ..-     ++.   ..+-...+.+.|++.++..
T Consensus       111 ~~~-----~~~~~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          111 LAM-----PHHQGNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             ECC-----SSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EeC-----CChHHHHHHHHHHHHHCCCCEEEEE
Confidence            632     222   3333455556777777664

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.00  E-value=1.1  Score=31.81  Aligned_cols=89  Identities=19%  Similarity=0.094  Sum_probs=51.7

Q ss_pred             CCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEE
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGW  161 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~  161 (298)
                      +++|+=+|+  |.++..+++.   .+.+|+++|.+++.++...+.   .    .+.++.+|..+..    ..-..+|+|+
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~----~~~~~~~d~~~~~~l~~~~~~~~d~vi   74 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I----DALVINGDCTKIKTLEDAGIEDADMYI   74 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C----SSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---c----CcEEEEcCCCCHHHHHHcCcccCCEEE
Confidence            468888887  5555555443   478999999998776655432   1    2456777765421    1124689887


Q ss_pred             ecccccccChH-HHHHHHhhcccCCcEEEE
Q psy2408         162 FFESIFHMNHS-AALNEARRVLKSGSILTL  190 (298)
Q Consensus       162 ~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i  190 (298)
                      ..-.-   ... ..+..+.+.+.++ .+++
T Consensus        75 ~~~~~---~~~~~~~~~~~~~~~~~-~ii~  100 (140)
T 1lss_A           75 AVTGK---EEVNLMSSLLAKSYGIN-KTIA  100 (140)
T ss_dssp             ECCSC---HHHHHHHHHHHHHTTCC-CEEE
T ss_pred             EeeCC---chHHHHHHHHHHHcCCC-EEEE
Confidence            65221   111 4444555667775 4444

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.70  E-value=0.022  Score=49.28  Aligned_cols=100  Identities=16%  Similarity=0.063  Sum_probs=57.5

Q ss_pred             CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          88 KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        88 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      ++.+|+=+|+|. |.....++...|++|+++|.++..++.+++.+   +.  .+.....+..++.-.-..+|+|+..-..
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~~~~~l~~~l~~aDvVi~~~~~  241 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF---CG--RIHTRYSSAYELEGAVKRADLVIGAVLV  241 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc---CC--eeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence            578999999964 55555555557899999999998877766532   21  1212111111110001257888764322


Q ss_pred             cccChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         167 FHMNHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .....+ -+.++..+.++|||.++...
T Consensus       242 p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          242 PGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             TTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            211222 23456678899999876543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.70  E-value=0.78  Score=37.35  Aligned_cols=71  Identities=15%  Similarity=0.079  Sum_probs=51.8

Q ss_pred             CeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          90 QRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      ++||=.|+  |.++..+++.   .|.+|++++.++........        .+++++.+|+.++.  -..+|+|+.....
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~--~~~~d~vi~~a~~   73 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS--LDGVTHLLISTAP   73 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEecccccc--cCCCCEEEECCCc
Confidence            58999994  8888888776   37899999998765443321        24889999998866  4678999876665


Q ss_pred             cccChH
Q psy2408         167 FHMNHS  172 (298)
Q Consensus       167 ~~~~~~  172 (298)
                      ....++
T Consensus        74 ~~~~~~   79 (286)
T 3ius_A           74 DSGGDP   79 (286)
T ss_dssp             BTTBCH
T ss_pred             cccccH
Confidence            444333

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=93.62  E-value=0.049  Score=46.67  Aligned_cols=97  Identities=11%  Similarity=0.092  Sum_probs=59.1

Q ss_pred             CCCCCC-CeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHH----HHHHHHHHHhcCCCCceEEEEC------CCCC-
Q psy2408          84 TSITKG-QRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQ----QESAMKTAKAEGLLDKVNFLHG------DALN-  149 (298)
Q Consensus        84 ~~~~~~-~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~----l~~a~~~~~~~~~~~~i~~~~~------d~~~-  149 (298)
                      .++.++ .+||-.|+ | .|..+..+++..|++++++.-+.+.    .+.++    ..|..   .++..      |+.+ 
T Consensus       162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~----~lGa~---~vi~~~~~~~~~~~~~  234 (364)
T 1gu7_A          162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK----ELGAT---QVITEDQNNSREFGPT  234 (364)
T ss_dssp             SCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHH----HHTCS---EEEEHHHHHCGGGHHH
T ss_pred             hccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHH----hcCCe---EEEecCccchHHHHHH
Confidence            477889 99999997 5 3788888888779998888654432    33333    23432   22221      1110 


Q ss_pred             C-CC---CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         150 L-PF---DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       150 ~-~~---~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      + ..   ....+|+|+-+     .....+. ...++|+++|+++....
T Consensus       235 i~~~t~~~~~g~Dvvid~-----~G~~~~~-~~~~~l~~~G~~v~~g~  276 (364)
T 1gu7_A          235 IKEWIKQSGGEAKLALNC-----VGGKSST-GIARKLNNNGLMLTYGG  276 (364)
T ss_dssp             HHHHHHHHTCCEEEEEES-----SCHHHHH-HHHHTSCTTCEEEECCC
T ss_pred             HHHHhhccCCCceEEEEC-----CCchhHH-HHHHHhccCCEEEEecC
Confidence            0 00   12469998643     3333333 66799999999887543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=93.52  E-value=0.86  Score=39.17  Aligned_cols=110  Identities=13%  Similarity=0.109  Sum_probs=71.1

Q ss_pred             HHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEECCCCCCCCCC
Q psy2408          77 SRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD-KVNFLHGDALNLPFDN  154 (298)
Q Consensus        77 ~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~  154 (298)
                      -+.+++.+.. ..+.+||.++.+.|.++..++..   .++.+.-|--.....+.++..++++. .+++... ...+   .
T Consensus        26 d~~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~---~   98 (375)
T 4dcm_A           26 DEYLLQQLDDTEIRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-TADY---P   98 (375)
T ss_dssp             HHHHHHTTTTCCCCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSCC---C
T ss_pred             HHHHHHhhhhccCCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-cccc---c
Confidence            3445555432 24568999999999999888752   34555446666677777788777754 3555433 2222   3


Q ss_pred             CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         155 DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ..||+|+.... -+.... ..|..+...|+||+.+++....
T Consensus        99 ~~~~~v~~~lp-k~~~~l~~~L~~l~~~l~~~~~i~~~g~~  138 (375)
T 4dcm_A           99 QQPGVVLIKVP-KTLALLEQQLRALRKVVTSDTRIIAGAKA  138 (375)
T ss_dssp             SSCSEEEEECC-SCHHHHHHHHHHHHTTCCTTSEEEEEEEG
T ss_pred             cCCCEEEEEcC-CCHHHHHHHHHHHHhhCCCCCEEEEEecc
Confidence            67999875222 111222 7788889999999998876543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.49  E-value=0.49  Score=34.13  Aligned_cols=65  Identities=18%  Similarity=0.213  Sum_probs=44.3

Q ss_pred             CCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEE
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGW  161 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~  161 (298)
                      ..+|+-+|||  .++..+++.   .|.+|+++|.+++.++.++..        .+.++.+|..+..    ..-..+|+|+
T Consensus         6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~--------~~~~~~gd~~~~~~l~~~~~~~~d~vi   75 (141)
T 3llv_A            6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE--------GFDAVIADPTDESFYRSLDLEGVSAVL   75 (141)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT--------TCEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred             CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC--------CCcEEECCCCCHHHHHhCCcccCCEEE
Confidence            4589999985  455555543   488999999999877766532        2567888887631    1224688887


Q ss_pred             ec
Q psy2408         162 FF  163 (298)
Q Consensus       162 ~~  163 (298)
                      ..
T Consensus        76 ~~   77 (141)
T 3llv_A           76 IT   77 (141)
T ss_dssp             EC
T ss_pred             Ee
Confidence            53

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=93.38  E-value=0.21  Score=41.51  Aligned_cols=70  Identities=14%  Similarity=0.012  Sum_probs=52.0

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC---C-CCCeeE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCR---VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF---D-NDSFDG  159 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~---v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~-~~~fD~  159 (298)
                      ..+.+++|+-||.|.++.-+.+ .|.+   +.++|+++...+..+.+..      ...++.+|+.++..   + .+.+|+
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~-aG~~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~~~~~Dl   86 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKD-LGIQVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQEWGPFDL   86 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHH-TTBCEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHHTCCCSE
T ss_pred             CCCCEEEEeCcCccHHHHHHHH-CCCccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcccCCcCE
Confidence            4567999999999999988877 4544   5899999988777665542      24578899988741   1 136899


Q ss_pred             EEec
Q psy2408         160 GWFF  163 (298)
Q Consensus       160 V~~~  163 (298)
                      ++..
T Consensus        87 l~gg   90 (295)
T 2qrv_A           87 VIGG   90 (295)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9863

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.19  E-value=0.037  Score=47.67  Aligned_cols=100  Identities=13%  Similarity=0.088  Sum_probs=55.2

Q ss_pred             CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          88 KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        88 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      ++.+|+-+|+|. |.....++...|++|+++|.++..++.+.+..   +.  .+.....+...+.-.-..+|+|+.+-..
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~~l~~~~~~~DvVi~~~g~  239 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF---GG--RVITLTATEANIKKSVQHADLLIGAVLV  239 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence            457999999853 44444444446899999999998777665432   21  1222211111110001357988765433


Q ss_pred             cccChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         167 FHMNHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .....+ -+.++..+.+++||.++...
T Consensus       240 ~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          240 PGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             ------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CccccchhHHHHHHHhhcCCCEEEEEe
Confidence            211122 23566778889999876543

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=93.15  E-value=0.094  Score=45.49  Aligned_cols=96  Identities=18%  Similarity=0.192  Sum_probs=59.0

Q ss_pred             CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC------C---C--CCCC-
Q psy2408          88 KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL------N---L--PFDN-  154 (298)
Q Consensus        88 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~------~---~--~~~~-  154 (298)
                      ++.+|+-+|+|. |..+..++...|++|+++|.++..++.+++.    |    ..++..+..      .   .  .+++ 
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~----G----~~~~~~~~~~~~d~~~~~~ya~e~s~~  260 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASL----G----AKFIAVEDEEFKAAETAGGYAKEMSGE  260 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHT----T----CEECCCCC-----------------CH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc----C----Cceeecccccccccccccchhhhcchh
Confidence            568999999986 6667677776799999999999877777542    2    122221110      0   0  0000 


Q ss_pred             -------------CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEE
Q psy2408         155 -------------DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       155 -------------~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~  191 (298)
                                   ...|+|+....+.--+.+ -+-+++.+.+|||..++-.
T Consensus       261 ~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDv  311 (405)
T 4dio_A          261 YQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDL  311 (405)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEET
T ss_pred             hhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEE
Confidence                         357999864332221223 3446888899999876543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=93.03  E-value=0.35  Score=42.21  Aligned_cols=94  Identities=18%  Similarity=0.094  Sum_probs=60.9

Q ss_pred             CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEEe
Q psy2408          88 KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGWF  162 (298)
Q Consensus        88 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~  162 (298)
                      ...+|+=+|+|. |..........|..|+++|.+++.++.++..    +    +.++.+|+.+..    ..-...|+|++
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~----g----~~vi~GDat~~~~L~~agi~~A~~viv   74 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF----G----MKVFYGDATRMDLLESAGAAKAEVLIN   74 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT----T----CCCEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC----C----CeEEEcCCCCHHHHHhcCCCccCEEEE
Confidence            345788888864 4333333333588999999999998877632    3    567899988741    12356888765


Q ss_pred             cccccccChH---HHHHHHhhcccCCcEEEEEeCC
Q psy2408         163 FESIFHMNHS---AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       163 ~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .-     ++.   ..+....+-+.|...++.-...
T Consensus        75 ~~-----~~~~~n~~i~~~ar~~~p~~~Iiara~~  104 (413)
T 3l9w_A           75 AI-----DDPQTNLQLTEMVKEHFPHLQIIARARD  104 (413)
T ss_dssp             CC-----SSHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred             CC-----CChHHHHHHHHHHHHhCCCCeEEEEECC
Confidence            32     233   5556666777888777765433

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=92.85  E-value=0.037  Score=46.10  Aligned_cols=55  Identities=18%  Similarity=0.137  Sum_probs=39.6

Q ss_pred             ceEEEECCCCCC--CCCCCCeeEEEeccccccc--------------------ChH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         139 KVNFLHGDALNL--PFDNDSFDGGWFFESIFHM--------------------NHS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       139 ~i~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~--------------------~~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ++.++++|..+.  .+++++||+|++.--....                    ... .+++++.++|+|||.+++...
T Consensus        21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            578999998763  3567899999986443211                    111 567899999999999988643

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=92.67  E-value=0.094  Score=44.65  Aligned_cols=99  Identities=13%  Similarity=0.016  Sum_probs=59.5

Q ss_pred             HHhCCCCCC-CeEEEe-CCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC------
Q psy2408          81 INKTSITKG-QRFIDI-GCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP------  151 (298)
Q Consensus        81 ~~~~~~~~~-~~vLDi-GcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~------  151 (298)
                      ++... .++ .+||=. |+|. |..+..+++..|++|+++|.+++.++.+++.    |..   .++..+-.++.      
T Consensus       157 ~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~----Ga~---~~~~~~~~~~~~~v~~~  228 (349)
T 3pi7_A          157 FDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDI----GAA---HVLNEKAPDFEATLREV  228 (349)
T ss_dssp             HHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHH----TCS---EEEETTSTTHHHHHHHH
T ss_pred             HHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCC---EEEECCcHHHHHHHHHH
Confidence            33333 445 566644 4442 6666666776799999999999888887653    321   23322211110      


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .....+|+|+-+..     . ..+..+.++|+++|++++...
T Consensus       229 ~~~~g~D~vid~~g-----~-~~~~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          229 MKAEQPRIFLDAVT-----G-PLASAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             HHHHCCCEEEESSC-----H-HHHHHHHHHSCTTCEEEECCC
T ss_pred             hcCCCCcEEEECCC-----C-hhHHHHHhhhcCCCEEEEEec
Confidence            00136898875432     2 234678899999999988653

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=92.62  E-value=0.81  Score=38.28  Aligned_cols=79  Identities=20%  Similarity=0.118  Sum_probs=56.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  154 (298)
                      .+.+||-.|++. .++..+++.   .|++|++++.++..++.+...+...+...++.++..|+.+..     +     ..
T Consensus         7 ~~k~vlVTGas~-gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            7 AGRTAFVTGGAN-GVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TTCEEEEETTTS-THHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCch-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            466888888664 455555554   488999999999988888777766554346889999998741     0     01


Q ss_pred             CCeeEEEeccccc
Q psy2408         155 DSFDGGWFFESIF  167 (298)
Q Consensus       155 ~~fD~V~~~~~l~  167 (298)
                      +.+|+++.+..+.
T Consensus        86 g~id~lv~nAg~~   98 (319)
T 3ioy_A           86 GPVSILCNNAGVN   98 (319)
T ss_dssp             CCEEEEEECCCCC
T ss_pred             CCCCEEEECCCcC
Confidence            4789999876653

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=92.41  E-value=0.13  Score=43.51  Aligned_cols=67  Identities=13%  Similarity=0.172  Sum_probs=50.3

Q ss_pred             CeEEEeCCCCCHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---CCCCCeeEEEec
Q psy2408          90 QRFIDIGCGFGLSGIRLAKAKG---CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---FDNDSFDGGWFF  163 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~~~---~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~V~~~  163 (298)
                      .+++|+-||.|.++.-+.+. |   ..+.++|+++...+..+.++.      ...++..|+.++.   ++...+|+++..
T Consensus         4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~~~~~D~l~gg   76 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIKKWNVDTILMS   76 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred             CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhccCCCCEEEec
Confidence            48999999999999888774 4   357899999988887776653      2446788888763   222368999864

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=91.93  E-value=0.034  Score=47.80  Aligned_cols=95  Identities=19%  Similarity=0.177  Sum_probs=58.1

Q ss_pred             CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC--C----------------
Q psy2408          88 KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA--L----------------  148 (298)
Q Consensus        88 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~--~----------------  148 (298)
                      ++.+|+=+|+|. |..+..++...|++|+++|.++..++.+.+.    |    ..++..+.  .                
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~l----G----a~~~~l~~~~~~~~gya~~~~~~~~~~  254 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSV----G----AQWLDLGIDAAGEGGYARELSEAERAQ  254 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHT----T----CEECCCC-------------CHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEeccccccccccchhhhhHHHHhh
Confidence            568999999986 6666666666799999999999877776542    2    22222110  0                


Q ss_pred             ---CCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEE
Q psy2408         149 ---NLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTL  190 (298)
Q Consensus       149 ---~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i  190 (298)
                         .+.-.-...|+|+..-.+-.-+.+ -+-+++.+.+|||+.++-
T Consensus       255 ~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVD  300 (381)
T 3p2y_A          255 QQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVD  300 (381)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEE
T ss_pred             hHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEE
Confidence               000001568999865322211222 234678888999886554

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=91.49  E-value=1.9  Score=35.13  Aligned_cols=101  Identities=17%  Similarity=0.091  Sum_probs=67.0

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCC------------HHHHHHHHHHHHhcCCCCceEEEECCCCCCC-
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITIS------------KFQQESAMKTAKAEGLLDKVNFLHGDALNLP-  151 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s------------~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-  151 (298)
                      .+.+||-.|++ |.++..+++.   .|++|+.+|.+            ...++.+...+...+  .++.++..|+.+.. 
T Consensus         9 ~gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A            9 QDKVVLVTGGA-RGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHH
Confidence            46688888865 4555555554   48899999987            767776666665544  46889999998742 


Q ss_pred             ----CC-----CCCeeEEEecccccccC-----h------------H-HHHHHHhhcccCCcEEEEE
Q psy2408         152 ----FD-----NDSFDGGWFFESIFHMN-----H------------S-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       152 ----~~-----~~~fD~V~~~~~l~~~~-----~------------~-~~l~~~~r~LkpgG~l~i~  191 (298)
                          +.     -+..|+++.+..+....     +            . .+++.+.+.++.+|.++..
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i  152 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT  152 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence                00     13789998876553321     1            1 4556677777788887765

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=91.40  E-value=0.068  Score=46.29  Aligned_cols=42  Identities=26%  Similarity=0.335  Sum_probs=33.2

Q ss_pred             CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Q psy2408          88 KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMK  129 (298)
Q Consensus        88 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~  129 (298)
                      ++.+|+=+|+|. |..+..+++..|++|+++|.++...+.++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            578999999986 666666676678999999999876666543

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=91.30  E-value=0.4  Score=40.91  Aligned_cols=95  Identities=14%  Similarity=0.107  Sum_probs=63.5

Q ss_pred             CCCCCCCeEEEeCCCC-CHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC------CCCCCCC
Q psy2408          84 TSITKGQRFIDIGCGF-GLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL------NLPFDND  155 (298)
Q Consensus        84 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~------~~~~~~~  155 (298)
                      .++.++.+||-+|+|. |..+..+++.. |++|+++|.+++.++.+++.    |..   .++...-.      ++. ...
T Consensus       182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~v~~~~-~g~  253 (359)
T 1h2b_A          182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GAD---HVVDARRDPVKQVMELT-RGR  253 (359)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TCS---EEEETTSCHHHHHHHHT-TTC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCC---EEEeccchHHHHHHHHh-CCC
Confidence            6788999999999974 66777777777 99999999999888887643    321   22322111      111 123


Q ss_pred             CeeEEEecccccccChHH--HHHHHhhcccCCcEEEEEeC
Q psy2408         156 SFDGGWFFESIFHMNHSA--ALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~~--~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .+|+|+-.     ...+.  .+....++  ++|+++....
T Consensus       254 g~Dvvid~-----~G~~~~~~~~~~~~~--~~G~~v~~g~  286 (359)
T 1h2b_A          254 GVNVAMDF-----VGSQATVDYTPYLLG--RMGRLIIVGY  286 (359)
T ss_dssp             CEEEEEES-----SCCHHHHHHGGGGEE--EEEEEEECCC
T ss_pred             CCcEEEEC-----CCCchHHHHHHHhhc--CCCEEEEEeC
Confidence            69998643     22333  66667777  8999887644

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=91.08  E-value=0.41  Score=40.63  Aligned_cols=98  Identities=13%  Similarity=0.169  Sum_probs=57.6

Q ss_pred             HHHhCCCCCCCeEEEeCC-C-CCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----C
Q psy2408          80 MINKTSITKGQRFIDIGC-G-FGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----P  151 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~  151 (298)
                      +.+..++.++.+||=.|+ | .|..+..+++.. +.+|++++ ++...+.++     .+..   .++..+ .++     .
T Consensus       134 l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~ga~---~~~~~~-~~~~~~~~~  203 (349)
T 4a27_A          134 LFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DSVT---HLFDRN-ADYVQEVKR  203 (349)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GGSS---EEEETT-SCHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cCCc---EEEcCC-ccHHHHHHH
Confidence            346678889999999998 4 377777777765 46899988 554444443     2321   223311 111     0


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      ...+.+|+|+-+-     ..+ .+....++|+++|++++...
T Consensus       204 ~~~~g~Dvv~d~~-----g~~-~~~~~~~~l~~~G~~v~~G~  239 (349)
T 4a27_A          204 ISAEGVDIVLDCL-----CGD-NTGKGLSLLKPLGTYILYGS  239 (349)
T ss_dssp             HCTTCEEEEEEEC-----C--------CTTEEEEEEEEEEC-
T ss_pred             hcCCCceEEEECC-----Cch-hHHHHHHHhhcCCEEEEECC
Confidence            1235799987532     222 23678899999999988654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=90.91  E-value=1.3  Score=35.61  Aligned_cols=99  Identities=14%  Similarity=0.146  Sum_probs=65.3

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC----------CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF----------DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~  154 (298)
                      .+.++|-.|++ |.++..+++.   .|++|+.+|.+++.++...+...     .++.++..|+.+..-          ..
T Consensus         7 ~gk~~lVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            7 QGKKAIVIGGT-HGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG-----PRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            46788888855 5555555554   48899999999987776665542     358899999887420          01


Q ss_pred             CCeeEEEecccccccC------h-------------H-HHHHHHhhcccCCcEEEEEe
Q psy2408         155 DSFDGGWFFESIFHMN------H-------------S-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~------~-------------~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +..|+++.+..+....      .             . .+.+.+.+.++.+|.++...
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  138 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS  138 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence            4789998765543221      1             1 34566667777788877653

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=90.89  E-value=0.44  Score=40.06  Aligned_cols=66  Identities=17%  Similarity=0.103  Sum_probs=49.1

Q ss_pred             CeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC-CCCeeEEEec
Q psy2408          90 QRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD-NDSFDGGWFF  163 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~  163 (298)
                      ++|||+-||.|.++.-+.+ .|. .+.++|+++...+.-+.+..       -.++.+|+.++... -..+|+++..
T Consensus         1 mkvidLFsG~GG~~~G~~~-aG~~~v~a~e~d~~a~~ty~~N~~-------~~~~~~DI~~i~~~~~~~~D~l~gg   68 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQK-AGFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDEFPKCDGIIGG   68 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHH-TTCEEEEEEECCTTTHHHHHHHCC-------SEEEESCGGGCCGGGSCCCSEEECC
T ss_pred             CeEEEeCcCccHHHHHHHH-CCCEEEEEEeCCHHHHHHHHHHCC-------CCcccCChhhCCHhhCCcccEEEec
Confidence            4799999999999988877 455 46799999987777666531       35788999887421 2468998863

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=90.74  E-value=0.99  Score=36.35  Aligned_cols=101  Identities=16%  Similarity=0.031  Sum_probs=65.3

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh----cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC-----
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA----KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD-----  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~----~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----  153 (298)
                      .+.+||-.| |+|.++..+++.    .|++|++++.++..++...+.+...+  .++.++.+|+.+..     +.     
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            456788666 567777766654    47899999999887777666665543  45889999988741     00     


Q ss_pred             CCCeeEEEeccccccc-----C--h------------H-HHHHHHhhcccCCcEEEEE
Q psy2408         154 NDSFDGGWFFESIFHM-----N--H------------S-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~-----~--~------------~-~~l~~~~r~LkpgG~l~i~  191 (298)
                      .+.+|+|+.+......     .  +            . .+++.+.+.++++|+++..
T Consensus        80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~  137 (276)
T 1wma_A           80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  137 (276)
T ss_dssp             HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEE
Confidence            1378999876543221     1  0            1 3455666666667777665

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=90.43  E-value=1.8  Score=31.65  Aligned_cols=92  Identities=16%  Similarity=0.134  Sum_probs=55.6

Q ss_pred             CCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCC-HHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEE
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKA---KGCRVDGITIS-KFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGG  160 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s-~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V  160 (298)
                      ..+|+=+|+  |..+..+++.   .|..|+++|.+ ++..+.......     ..+.++.+|..+..    ..-+..|+|
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a~i~~ad~v   75 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-----CCCeEEEcCCCCHHHHHHcChhhCCEE
Confidence            347888876  5666666554   47899999997 554444443321     23788999987531    112467887


Q ss_pred             EecccccccChH--HHHHHHhhcccCCcEEEEE
Q psy2408         161 WFFESIFHMNHS--AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       161 ~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~  191 (298)
                      ++.-.    .+.  ..+....+.+.|...++..
T Consensus        76 i~~~~----~d~~n~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           76 LALSD----NDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             EECSS----CHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             EEecC----ChHHHHHHHHHHHHHCCCCEEEEE
Confidence            75421    122  4555566666677666653

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=90.26  E-value=0.17  Score=42.69  Aligned_cols=55  Identities=15%  Similarity=0.080  Sum_probs=39.7

Q ss_pred             ceEEEECCCCC-C-CCCCCCeeEEEeccccccc--------------ChH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         139 KVNFLHGDALN-L-PFDNDSFDGGWFFESIFHM--------------NHS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       139 ~i~~~~~d~~~-~-~~~~~~fD~V~~~~~l~~~--------------~~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +..++++|..+ + .+++++||+|++.--....              ... ..+.++.++|+|||.+++..-
T Consensus        14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~   85 (323)
T 1boo_A           14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG   85 (323)
T ss_dssp             SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence            46788898765 3 2557899999986433221              123 888999999999999988643

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=89.94  E-value=3.3  Score=34.02  Aligned_cols=103  Identities=16%  Similarity=0.094  Sum_probs=66.0

Q ss_pred             CCCeEEEeCCCCC-HHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----C
Q psy2408          88 KGQRFIDIGCGFG-LSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----D  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G-~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~  153 (298)
                      .+.++|-.|++.| .++..+++.   .|++|+.++.++...+.+.+.....+   ++.++.+|+.+..     +     .
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLEKK  106 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHHh
Confidence            5678999997643 244444443   48899999999766666655554433   4788999998741     0     0


Q ss_pred             CCCeeEEEecccccc----------cCh-------------H-HHHHHHhhcccCCcEEEEEeC
Q psy2408         154 NDSFDGGWFFESIFH----------MNH-------------S-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~----------~~~-------------~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      -+..|+++.+..+..          ...             . .+++.+.+.++.+|+++....
T Consensus       107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS  170 (293)
T 3grk_A          107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY  170 (293)
T ss_dssp             TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence            147899998765532          111             1 355666677777888776543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=89.91  E-value=0.6  Score=34.37  Aligned_cols=93  Identities=17%  Similarity=0.145  Sum_probs=51.4

Q ss_pred             CCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEE
Q psy2408          87 TKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGW  161 (298)
Q Consensus        87 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~  161 (298)
                      .++.+|+=+|||. |......+...|.+|+++|.+++.++.++.   .    ....++.+|..+..    ..-..+|+|+
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~----~g~~~~~~d~~~~~~l~~~~~~~ad~Vi   89 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---E----FSGFTVVGDAAEFETLKECGMEKADMVF   89 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---T----CCSEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---c----CCCcEEEecCCCHHHHHHcCcccCCEEE
Confidence            3567999999864 433333333357899999998765443321   1    12456667754321    1124688887


Q ss_pred             ecccccccChH---HHHHHHhhcccCCcEEEEE
Q psy2408         162 FFESIFHMNHS---AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       162 ~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~  191 (298)
                      ..-     +++   ..+..+.+.+.|...++..
T Consensus        90 ~~~-----~~~~~~~~~~~~~~~~~~~~~iv~~  117 (155)
T 2g1u_A           90 AFT-----NDDSTNFFISMNARYMFNVENVIAR  117 (155)
T ss_dssp             ECS-----SCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred             EEe-----CCcHHHHHHHHHHHHHCCCCeEEEE
Confidence            542     223   4444455555555555553

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=89.83  E-value=1.5  Score=36.61  Aligned_cols=87  Identities=17%  Similarity=0.163  Sum_probs=53.7

Q ss_pred             CCeEEEeCCCC-C-HHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-CCCCCCCeeEEEec
Q psy2408          89 GQRFIDIGCGF-G-LSGIRLAKAKGC--RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-LPFDNDSFDGGWFF  163 (298)
Q Consensus        89 ~~~vLDiGcG~-G-~~~~~l~~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~V~~~  163 (298)
                      ..+|.=||+|. | .++..+.+ .|.  +|+++|.+++.++.+.+    .|.   +.....|..+ .   -...|+|+..
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~-~G~~~~V~~~dr~~~~~~~a~~----~G~---~~~~~~~~~~~~---~~~aDvVila  101 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRR-SGFKGKIYGYDINPESISKAVD----LGI---IDEGTTSIAKVE---DFSPDFVMLS  101 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHH-TTCCSEEEEECSCHHHHHHHHH----TTS---CSEEESCTTGGG---GGCCSEEEEC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHh-CCCCCEEEEEECCHHHHHHHHH----CCC---cchhcCCHHHHh---hccCCEEEEe
Confidence            36899999875 3 33444444 466  89999999987776653    232   1122334333 1   1457988764


Q ss_pred             ccccccChH-HHHHHHhhcccCCcEEE
Q psy2408         164 ESIFHMNHS-AALNEARRVLKSGSILT  189 (298)
Q Consensus       164 ~~l~~~~~~-~~l~~~~r~LkpgG~l~  189 (298)
                      -...   .. .+++++...++|+..++
T Consensus       102 vp~~---~~~~vl~~l~~~l~~~~iv~  125 (314)
T 3ggo_A          102 SPVR---TFREIAKKLSYILSEDATVT  125 (314)
T ss_dssp             SCGG---GHHHHHHHHHHHSCTTCEEE
T ss_pred             CCHH---HHHHHHHHHhhccCCCcEEE
Confidence            3322   12 77888888898887543

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=89.74  E-value=1.4  Score=32.43  Aligned_cols=48  Identities=17%  Similarity=0.124  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeC
Q psy2408          71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITI  119 (298)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~  119 (298)
                      .+|+....+......--+| -|||+|-|.|..=..+.+.+ +..+.++|-
T Consensus        24 taQR~~L~~a~~~v~~~~G-pVlElGLGNGRTydHLRe~~P~R~I~vfDR   72 (174)
T 3iht_A           24 VSQRACLEHAIAQTAGLSG-PVYELGLGNGRTYHHLRQHVQGREIYVFER   72 (174)
T ss_dssp             HHHHHHHHHHHHHTTTCCS-CEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred             HHHHHHHHHHHHHhcCCCC-ceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence            3556667777777764444 89999999999999998874 778999996

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=89.69  E-value=1.8  Score=34.89  Aligned_cols=105  Identities=16%  Similarity=0.156  Sum_probs=66.3

Q ss_pred             CCCeEEEeCCCCC-HHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC-----
Q psy2408          88 KGQRFIDIGCGFG-LSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD-----  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G-~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----  153 (298)
                      .+.+||-.|++.+ .++..+++.   .|++|+.++.++...+.+.+.....+- .++.++.+|+.+..     +.     
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            4678898887632 244444443   488999999887666666665554432 26889999998752     00     


Q ss_pred             CCCeeEEEecccccc----------cChH--------------HHHHHHhhcccCCcEEEEEeC
Q psy2408         154 NDSFDGGWFFESIFH----------MNHS--------------AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~----------~~~~--------------~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .+.+|+++.+..+..          ....              .+++.+...++++|+++....
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  148 (266)
T 3oig_A           85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY  148 (266)
T ss_dssp             HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence            146898887655432          1111              255667778888888776543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=88.91  E-value=3.6  Score=33.72  Aligned_cols=102  Identities=18%  Similarity=0.110  Sum_probs=64.3

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHH-HHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----C
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKF-QQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----D  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~-~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~  153 (298)
                      .+.+||-.|++ |.++..+++.   .|++|+.++.+.. ..+...+.....+  .++.++.+|+.+..     +     .
T Consensus        46 ~gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGD-SGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            46688888855 5556666554   4889999998764 3444444444433  46889999998741     0     0


Q ss_pred             CCCeeEEEeccccccc-------Ch-------------H-HHHHHHhhcccCCcEEEEEe
Q psy2408         154 NDSFDGGWFFESIFHM-------NH-------------S-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~-------~~-------------~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .+..|+++.+......       ..             . .+++.+.+.++.+|+++...
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence            1468999876543221       11             1 45666777788888877653

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=88.84  E-value=4.1  Score=32.84  Aligned_cols=104  Identities=23%  Similarity=0.230  Sum_probs=66.7

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeC-CHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----C
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITI-SKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----D  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~-s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~  153 (298)
                      .+.++|-.|++ |.++..+++.   .|++|+.++. +...++...+.+...+  .++.++..|+.+..     +     .
T Consensus        17 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   93 (270)
T 3is3_A           17 DGKVALVTGSG-RGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVAH   93 (270)
T ss_dssp             TTCEEEESCTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46678877755 5555566554   4889988775 4566666666655544  46889999998742     0     0


Q ss_pred             CCCeeEEEecccccccCh-------------------H-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         154 NDSFDGGWFFESIFHMNH-------------------S-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~-------------------~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .+..|+++.+..+.....                   . .+.+.+.+.++++|+++.....
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  154 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSN  154 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCT
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence            146899987655533211                   1 4556777788888888776543

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=88.83  E-value=1.6  Score=35.88  Aligned_cols=103  Identities=17%  Similarity=0.087  Sum_probs=65.6

Q ss_pred             CCCeEEEeCCCC-CHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC-----
Q psy2408          88 KGQRFIDIGCGF-GLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD-----  153 (298)
Q Consensus        88 ~~~~vLDiGcG~-G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----  153 (298)
                      .+.+||-.|++. ..++..+++.   .|++|+.+|.++...+.+.+.....+   .+.++.+|+.+..     +.     
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            467899999764 3455555443   48999999999765555555544433   3678899988742     00     


Q ss_pred             CCCeeEEEecccccc----------cCh-------------H-HHHHHHhhcccCCcEEEEEeC
Q psy2408         154 NDSFDGGWFFESIFH----------MNH-------------S-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~----------~~~-------------~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      -+.+|+++.+..+..          ...             . .+++.+.+.++.+|+++....
T Consensus       106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS  169 (296)
T 3k31_A          106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY  169 (296)
T ss_dssp             HSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             cCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence            147899998765532          111             1 455666777777888776543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=88.81  E-value=0.46  Score=51.01  Aligned_cols=101  Identities=15%  Similarity=0.094  Sum_probs=67.8

Q ss_pred             HhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----C-CC
Q psy2408          82 NKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----P-FD  153 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~  153 (298)
                      ...++.+|.+||-.|+ | .|..+..+++..|++|++++.+++..+.+++.+...+..   .++...-.++     . ..
T Consensus      1661 ~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~---~v~~~~~~~~~~~i~~~t~ 1737 (2512)
T 2vz8_A         1661 VRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDET---CFANSRDTSFEQHVLRHTA 1737 (2512)
T ss_dssp             TTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCST---TEEESSSSHHHHHHHHTTT
T ss_pred             HHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCce---EEecCCCHHHHHHHHHhcC
Confidence            4556789999999974 4 478888888878999999999998888777643222221   1222111110     1 11


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEE
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLT  191 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~  191 (298)
                      ...+|+|+-+.     . ...+....++|+|+|+++..
T Consensus      1738 g~GvDvVld~~-----g-~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A         1738 GKGVDLVLNSL-----A-EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp             SCCEEEEEECC-----C-HHHHHHHHTTEEEEEEEEEC
T ss_pred             CCCceEEEECC-----C-chHHHHHHHhcCCCcEEEEe
Confidence            24699997532     1 36688889999999998865

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=88.27  E-value=2.6  Score=32.84  Aligned_cols=86  Identities=16%  Similarity=0.046  Sum_probs=54.6

Q ss_pred             eEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEEec
Q psy2408          91 RFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGWFF  163 (298)
Q Consensus        91 ~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~  163 (298)
                      +|+=+|+  |.++..+++.   .+..|+++|.+++.++...+.   .    .+.++.+|..+..    ..-..+|+|++.
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~----~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---L----KATIIHGDGSHKEILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---S----SSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---c----CCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence            5677776  5566666654   478999999999877765433   1    2678999987631    112468888753


Q ss_pred             ccccccChH---HHHHHHhhcccCCcEEEE
Q psy2408         164 ESIFHMNHS---AALNEARRVLKSGSILTL  190 (298)
Q Consensus       164 ~~l~~~~~~---~~l~~~~r~LkpgG~l~i  190 (298)
                           .++.   ..+....+.+.|...++.
T Consensus        73 -----~~~d~~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           73 -----TPRDEVNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             -----CSCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             -----cCCcHHHHHHHHHHHHHcCCCeEEE
Confidence                 2333   455555565666666655

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=88.16  E-value=3.8  Score=33.57  Aligned_cols=102  Identities=18%  Similarity=0.082  Sum_probs=65.4

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCC--HHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITIS--KFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----  152 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s--~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----  152 (298)
                      .+.++|-.|+ +|.++..+++.   .|++|+.++.+  ....+...+.....+  .++.++.+|+.+..     +     
T Consensus        48 ~~k~vlVTGa-s~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           48 KDRKALVTGG-DSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            4668888885 45566666654   48899999886  344555555555544  46888889987741     0     


Q ss_pred             CCCCeeEEEecccccc-cC------h-------------H-HHHHHHhhcccCCcEEEEEe
Q psy2408         153 DNDSFDGGWFFESIFH-MN------H-------------S-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~-~~------~-------------~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ..+..|+++.+..... ..      .             . .+++.+.+.++.+|.++...
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is  185 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS  185 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence            0147899987765432 11      1             1 45566777788888877654

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=88.07  E-value=0.58  Score=41.66  Aligned_cols=58  Identities=17%  Similarity=0.117  Sum_probs=42.9

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      ..+++|+-||.|.++.-+.+ .|. .|.++|+++...+.-+.++..   .+...+++.|+.++
T Consensus        88 ~~~viDLFaG~GGlslG~~~-aG~~~v~avE~d~~A~~ty~~N~~~---~p~~~~~~~DI~~i  146 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFES-IGGQCVFTSEWNKHAVRTYKANHYC---DPATHHFNEDIRDI  146 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHT-TTEEEEEEECCCHHHHHHHHHHSCC---CTTTCEEESCTHHH
T ss_pred             cceEEEecCCccHHHHHHHH-CCCEEEEEEeCCHHHHHHHHHhccc---CCCcceeccchhhh
Confidence            46899999999999988877 454 489999999877776665421   12345677888765

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=87.93  E-value=3.3  Score=33.56  Aligned_cols=78  Identities=19%  Similarity=0.150  Sum_probs=54.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC-----C
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD-----N  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~  154 (298)
                      .+.+||-.| |+|.++..+++.   .|++|++++.++..++...+.+...+.+.++.++.+|+.+..     +.     .
T Consensus        31 ~~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           31 RDRLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            356788777 556666666654   388999999998877777666666554456888899987742     00     1


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +.+|+|+.+..+
T Consensus       110 g~iD~vi~~Ag~  121 (279)
T 1xg5_A          110 SGVDICINNAGL  121 (279)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            368999876654

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=87.83  E-value=4.5  Score=35.72  Aligned_cols=95  Identities=20%  Similarity=0.133  Sum_probs=55.8

Q ss_pred             CCeEEEeCCCC-CH-HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------cC------C-CCceEEEECCCCCCCC
Q psy2408          89 GQRFIDIGCGF-GL-SGIRLAKAKGCRVDGITISKFQQESAMKTAKA-------EG------L-LDKVNFLHGDALNLPF  152 (298)
Q Consensus        89 ~~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~------~-~~~i~~~~~d~~~~~~  152 (298)
                      -.+|.-||+|. |. ++..++. .|..|+++|.+++.++.++.....       .+      . ..... +..|...+  
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~-~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~-i~~~~~~~--  112 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFAR-VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLR-FSSSTKEL--  112 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEE-EESCGGGG--
T ss_pred             CCEEEEECcCHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhh-hcCCHHHH--
Confidence            35799999986 33 2333333 578999999999988887664321       01      0 01122 24444221  


Q ss_pred             CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEE
Q psy2408         153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTL  190 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i  190 (298)
                        ...|+|+..-. +...-. .+++++...++|+..++.
T Consensus       113 --~~aDlVIeaVp-e~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          113 --STVDLVVEAVF-EDMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             --TTCSEEEECCC-SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             --CCCCEEEEcCC-CCHHHHHHHHHHHHhhCCCCeEEEe
Confidence              45788875432 211112 778888888888876543

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=87.69  E-value=3.1  Score=33.51  Aligned_cols=76  Identities=18%  Similarity=0.141  Sum_probs=55.4

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FDN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  154 (298)
                      .++.+|--|++.| ++..+++.   .|++|..+|.+++.++...+.+...+  .++.++.+|+.+..          -.-
T Consensus         6 ~gKvalVTGas~G-IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            6 KNKVVIVTGAGSG-IGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4678888886655 44445443   48999999999999988888887766  46889999998742          012


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +..|+++.+..+
T Consensus        83 G~iDiLVNNAGi   94 (254)
T 4fn4_A           83 SRIDVLCNNAGI   94 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            578999876643

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=87.59  E-value=3.3  Score=33.59  Aligned_cols=82  Identities=21%  Similarity=0.234  Sum_probs=48.9

Q ss_pred             eEEEeCCCC-CHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccc
Q psy2408          91 RFIDIGCGF-GLS-GIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFH  168 (298)
Q Consensus        91 ~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~  168 (298)
                      +|.=||||. |.. +..+.+ .+.+|+++|.+++.++.+.+    .+...  . ...|..+.    ...|+|+..-    
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~-~g~~V~~~~~~~~~~~~~~~----~g~~~--~-~~~~~~~~----~~~D~vi~av----   65 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRR-RGHYLIGVSRQQSTCEKAVE----RQLVD--E-AGQDLSLL----QTAKIIFLCT----   65 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHH----TTSCS--E-EESCGGGG----TTCSEEEECS----
T ss_pred             EEEEEcCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHh----CCCCc--c-ccCCHHHh----CCCCEEEEEC----
Confidence            577788765 322 223333 47799999999987766542    23321  1 22333322    3579887643    


Q ss_pred             cChH---HHHHHHhhcccCCcEEE
Q psy2408         169 MNHS---AALNEARRVLKSGSILT  189 (298)
Q Consensus       169 ~~~~---~~l~~~~r~LkpgG~l~  189 (298)
                       +..   .++.++...++|+..++
T Consensus        66 -~~~~~~~~~~~l~~~~~~~~~vv   88 (279)
T 2f1k_A           66 -PIQLILPTLEKLIPHLSPTAIVT   88 (279)
T ss_dssp             -CHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             -CHHHHHHHHHHHHhhCCCCCEEE
Confidence             333   77788888888876543

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=87.58  E-value=3.8  Score=33.41  Aligned_cols=99  Identities=22%  Similarity=0.173  Sum_probs=65.7

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FDN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  154 (298)
                      .|+.+|--|++.| ++..+++.   .|++|+.+|.+++.++.+.+.+   +  .+...+.+|+.+..          -.-
T Consensus        28 ~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~  101 (273)
T 4fgs_A           28 NAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKAEA  101 (273)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence            5778888886655 55555544   4899999999998877665544   2  35778889988741          012


Q ss_pred             CCeeEEEecccccccC------h-------------H-HHHHHHhhcccCCcEEEEEe
Q psy2408         155 DSFDGGWFFESIFHMN------H-------------S-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~------~-------------~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +..|+++.+.......      +             . ...+.+.+.|+.+|.++...
T Consensus       102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis  159 (273)
T 4fgs_A          102 GRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG  159 (273)
T ss_dssp             SCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            5789988765543321      1             1 55567778888888766653

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=87.25  E-value=1.6  Score=35.04  Aligned_cols=102  Identities=14%  Similarity=0.079  Sum_probs=63.8

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEE-eCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC-----
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGI-TISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD-----  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~v-D~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----  153 (298)
                      .+.++|-.|++. .++..+++.   .|++|+.+ +.+....+...+.+...+  .++.++.+|+.+..     +.     
T Consensus         7 ~~k~vlVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (259)
T 3edm_A            7 TNRTIVVAGAGR-DIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADK   83 (259)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            466888888654 455555554   48899888 666666666666655443  46889999998742     00     


Q ss_pred             CCCeeEEEeccccc-c------cCh-------------H-HHHHHHhhcccCCcEEEEEe
Q psy2408         154 NDSFDGGWFFESIF-H------MNH-------------S-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       154 ~~~fD~V~~~~~l~-~------~~~-------------~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      -+..|+++.+.... .      ...             . .+.+.+.+.++++|+++...
T Consensus        84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  143 (259)
T 3edm_A           84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS  143 (259)
T ss_dssp             HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence            14789998765433 1      110             1 44556666777778777653

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=87.22  E-value=3  Score=32.09  Aligned_cols=91  Identities=20%  Similarity=0.207  Sum_probs=56.2

Q ss_pred             eEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC-CCCCeeEEEecccc
Q psy2408          91 RFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF-DNDSFDGGWFFESI  166 (298)
Q Consensus        91 ~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~~~l  166 (298)
                      +||=.| |+|.++..+++.   .|.+|++++.++..+....         .++.++.+|+.+... .-..+|+|+.+...
T Consensus         2 kvlVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---------~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   71 (221)
T 3ew7_A            2 KIGIIG-ATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---------KDINILQKDIFDLTLSDLSDQNVVVDAYGI   71 (221)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---------SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred             eEEEEc-CCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---------CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence            577666 567777777665   3789999999876544321         358899999877521 01468999876554


Q ss_pred             cccC--hH-HHHHHHhhcccC--CcEEEEE
Q psy2408         167 FHMN--HS-AALNEARRVLKS--GSILTLT  191 (298)
Q Consensus       167 ~~~~--~~-~~l~~~~r~Lkp--gG~l~i~  191 (298)
                      ....  .. ....++.+.++.  .+++++.
T Consensus        72 ~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~  101 (221)
T 3ew7_A           72 SPDEAEKHVTSLDHLISVLNGTVSPRLLVV  101 (221)
T ss_dssp             STTTTTSHHHHHHHHHHHHCSCCSSEEEEE
T ss_pred             CccccchHHHHHHHHHHHHHhcCCceEEEE
Confidence            3211  12 445555555544  3566654

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=87.20  E-value=5.2  Score=32.33  Aligned_cols=109  Identities=17%  Similarity=0.180  Sum_probs=67.8

Q ss_pred             HHhCCCCCCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCC-HHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----
Q psy2408          81 INKTSITKGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITIS-KFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----  151 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s-~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----  151 (298)
                      .....+ .+.++|-.|++ |.++..+++.   .|++|+.++.. ...++...+.+...+  .++.++.+|+.+..     
T Consensus        24 m~~~~l-~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~   99 (271)
T 3v2g_A           24 MTSISL-AGKTAFVTGGS-RGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQA   99 (271)
T ss_dssp             HTTTCC-TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHH
T ss_pred             ccccCC-CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHH
Confidence            333333 46788888865 4555555554   48899988654 455565555555544  46889999988742     


Q ss_pred             C-----CCCCeeEEEecccccccCh-------------------H-HHHHHHhhcccCCcEEEEEeC
Q psy2408         152 F-----DNDSFDGGWFFESIFHMNH-------------------S-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       152 ~-----~~~~fD~V~~~~~l~~~~~-------------------~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +     ..+..|+++.+..+.....                   + .+++.+.+.++++|.++....
T Consensus       100 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          100 IRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            0     0136899987765432211                   1 456667777888888777543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=86.60  E-value=1.9  Score=37.09  Aligned_cols=107  Identities=19%  Similarity=0.179  Sum_probs=66.8

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      ...+.+++.+.. .+.+||.++-+.|.++..+..  ..+++.+.-|......    +...++..  ..  .+  ....+.
T Consensus        33 ~~~~~l~~~~~~-~~~~~l~~n~~~g~~~~~~~~--~~~~~~~~~~~~~~~~----l~~~~~~~--~~--~~--~~~~~~   99 (381)
T 3dmg_A           33 PVHDLLQKTVEP-FGERALDLNPGVGWGSLPLEG--RMAVERLETSRAAFRC----LTASGLQA--RL--AL--PWEAAA   99 (381)
T ss_dssp             HHHHHHHTTCCC-CSSEEEESSCTTSTTTGGGBT--TBEEEEEECBHHHHHH----HHHTTCCC--EE--CC--GGGSCT
T ss_pred             hHHHHHHHHHHH-hCCcEEEecCCCCccccccCC--CCceEEEeCcHHHHHH----HHHcCCCc--cc--cC--CccCCc
Confidence            445566777654 446999999999987766643  3578888767655444    45556542  21  11  111234


Q ss_pred             CCeeEEEecccccccCh-H-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         155 DSFDGGWFFESIFHMNH-S-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~-~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ..||+|+....=.--.. . ..|.++.+.|+|||.+++..-.
T Consensus       100 ~~~d~v~~~~Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~g~~  141 (381)
T 3dmg_A          100 GAYDLVVLALPAGRGTAYVQASLVAAARALRMGGRLYLAGDK  141 (381)
T ss_dssp             TCEEEEEEECCGGGCHHHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             CCCCEEEEECCcchhHHHHHHHHHHHHHhCCCCCEEEEEEcc
Confidence            68999875332110001 2 7888889999999999887544

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=86.60  E-value=1.8  Score=35.81  Aligned_cols=88  Identities=15%  Similarity=0.094  Sum_probs=52.0

Q ss_pred             CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE-CCCCCCCCCCCCeeEEEeccc
Q psy2408          88 KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH-GDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        88 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      ++.+|+=+|+|. |......+...|.+|+++|.++...+.+.+    .+    +.... .+..++   -...|+|+..-.
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~----~g----~~~~~~~~l~~~---l~~aDvVi~~~p  224 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITE----MG----LVPFHTDELKEH---VKDIDICINTIP  224 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TT----CEEEEGGGHHHH---STTCSEEEECCS
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC----CeEEchhhHHHH---hhCCCEEEECCC
Confidence            678999999865 444444444468899999999865544322    22    22222 222221   146899987665


Q ss_pred             ccccChHHHHHHHhhcccCCcEEEEE
Q psy2408         166 IFHMNHSAALNEARRVLKSGSILTLT  191 (298)
Q Consensus       166 l~~~~~~~~l~~~~r~LkpgG~l~i~  191 (298)
                      ...+..     .....++||+.++-.
T Consensus       225 ~~~i~~-----~~~~~mk~g~~lin~  245 (300)
T 2rir_A          225 SMILNQ-----TVLSSMTPKTLILDL  245 (300)
T ss_dssp             SCCBCH-----HHHTTSCTTCEEEEC
T ss_pred             hhhhCH-----HHHHhCCCCCEEEEE
Confidence            533322     244678998865443

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=86.54  E-value=6.3  Score=32.62  Aligned_cols=79  Identities=18%  Similarity=0.192  Sum_probs=51.5

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEE-ECCCCCCC-CC--CCCeeE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFL-HGDALNLP-FD--NDSFDG  159 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~-~~d~~~~~-~~--~~~fD~  159 (298)
                      .++.+||-.| |+|.++..+++.   .|.+|++++.++...+.....+.... ..++.++ .+|+.+.. +.  -..+|+
T Consensus         9 ~~~~~vlVTG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d~   86 (342)
T 1y1p_A            9 PEGSLVLVTG-ANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             CTTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCCCE
Confidence            3567898777 567777777765   37899999998876655444433211 1357888 78887642 11  136899


Q ss_pred             EEeccccc
Q psy2408         160 GWFFESIF  167 (298)
Q Consensus       160 V~~~~~l~  167 (298)
                      |+.+....
T Consensus        87 vih~A~~~   94 (342)
T 1y1p_A           87 VAHIASVV   94 (342)
T ss_dssp             EEECCCCC
T ss_pred             EEEeCCCC
Confidence            98765543

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=86.39  E-value=3.4  Score=33.53  Aligned_cols=84  Identities=20%  Similarity=0.217  Sum_probs=49.1

Q ss_pred             eEEEeCCCC-CHH-HHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC-CeeEEEeccc
Q psy2408          91 RFIDIGCGF-GLS-GIRLAKAKGC--RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND-SFDGGWFFES  165 (298)
Q Consensus        91 ~vLDiGcG~-G~~-~~~l~~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~fD~V~~~~~  165 (298)
                      +|.=||+|. |.. +..+.+ .|.  +|+++|.+++.++.+++    .|...   ....|..+.   -. ..|+|+..  
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~-~g~~~~V~~~d~~~~~~~~~~~----~g~~~---~~~~~~~~~---~~~~aDvVila--   69 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRR-SGFKGKIYGYDINPESISKAVD----LGIID---EGTTSIAKV---EDFSPDFVMLS--   69 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHH-TTCCSEEEEECSCHHHHHHHHH----TTSCS---EEESCGGGG---GGTCCSEEEEC--
T ss_pred             EEEEEecCHHHHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHH----CCCcc---cccCCHHHH---hcCCCCEEEEc--
Confidence            677888775 333 233333 465  89999999987776542    23211   112232221   13 57888753  


Q ss_pred             ccccChH---HHHHHHhhcccCCcEEEE
Q psy2408         166 IFHMNHS---AALNEARRVLKSGSILTL  190 (298)
Q Consensus       166 l~~~~~~---~~l~~~~r~LkpgG~l~i  190 (298)
                         ++..   .++.++...++++..++.
T Consensus        70 ---vp~~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           70 ---SPVRTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             ---SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             ---CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence               3433   677788888888875444

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=86.17  E-value=2  Score=35.38  Aligned_cols=88  Identities=16%  Similarity=0.057  Sum_probs=51.2

Q ss_pred             CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE-CCCCCCCCCCCCeeEEEeccc
Q psy2408          88 KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH-GDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        88 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      ++.+|+=+|+|. |......+...|.+|+++|.++...+.+.    ..+    +.... .++.++   -...|+|+..-.
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~----~~g----~~~~~~~~l~~~---l~~aDvVi~~~p  222 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA----EMG----MEPFHISKAAQE---LRDVDVCINTIP  222 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTT----SEEEEGGGHHHH---TTTCSEEEECCS
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH----HCC----CeecChhhHHHH---hcCCCEEEECCC
Confidence            678999999875 44444444446889999999987554432    223    22222 122111   146899987654


Q ss_pred             ccccChHHHHHHHhhcccCCcEEEEE
Q psy2408         166 IFHMNHSAALNEARRVLKSGSILTLT  191 (298)
Q Consensus       166 l~~~~~~~~l~~~~r~LkpgG~l~i~  191 (298)
                      ...+..     +....++||+.++-.
T Consensus       223 ~~~i~~-----~~l~~mk~~~~lin~  243 (293)
T 3d4o_A          223 ALVVTA-----NVLAEMPSHTFVIDL  243 (293)
T ss_dssp             SCCBCH-----HHHHHSCTTCEEEEC
T ss_pred             hHHhCH-----HHHHhcCCCCEEEEe
Confidence            432222     233467898866543

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=86.15  E-value=3.2  Score=32.54  Aligned_cols=72  Identities=15%  Similarity=0.112  Sum_probs=48.2

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCce-EEEECCCCC-CCCCCCCeeEEEe
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKV-NFLHGDALN-LPFDNDSFDGGWF  162 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i-~~~~~d~~~-~~~~~~~fD~V~~  162 (298)
                      .+++||=.| |+|.++..+++.   .|.+|++++.++..++....        .++ .++.+|+.+ +.-.-+.+|+|+.
T Consensus        20 ~~~~ilVtG-atG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~~~~~D~vi~   90 (236)
T 3e8x_A           20 QGMRVLVVG-ANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RGASDIVVANLEEDFSHAFASIDAVVF   90 (236)
T ss_dssp             -CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TTCSEEEECCTTSCCGGGGTTCSEEEE
T ss_pred             CCCeEEEEC-CCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CCCceEEEcccHHHHHHHHcCCCEEEE
Confidence            467899887 567777777765   37899999998765544322        147 889999862 1111246899987


Q ss_pred             cccccc
Q psy2408         163 FESIFH  168 (298)
Q Consensus       163 ~~~l~~  168 (298)
                      +.....
T Consensus        91 ~ag~~~   96 (236)
T 3e8x_A           91 AAGSGP   96 (236)
T ss_dssp             CCCCCT
T ss_pred             CCCCCC
Confidence            766543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=85.84  E-value=4.8  Score=31.91  Aligned_cols=76  Identities=21%  Similarity=0.069  Sum_probs=54.6

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  154 (298)
                      .+.+||=.|+ +|.++..+++.   .|++|+.+|.+++.++...+.+...+  .++.++.+|+.+..     +     ..
T Consensus         8 ~~k~vlITGa-s~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            8 ENKVGIVTGS-GGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4668888885 45566666654   38899999999998888777776544  46889999998742     0     01


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +..|+++.+..+
T Consensus        85 g~id~li~~Ag~   96 (253)
T 3qiv_A           85 GGIDYLVNNAAI   96 (253)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            378999887654

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=85.51  E-value=4.6  Score=32.38  Aligned_cols=76  Identities=16%  Similarity=0.026  Sum_probs=55.0

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  154 (298)
                      .+.+||-.|+ +|.++..+++.   .|++|++++.+++.++...+.+...+  .++.++..|+.+..     +     ..
T Consensus        28 ~~k~vlITGa-s~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~  104 (262)
T 3rkr_A           28 SGQVAVVTGA-SRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAAH  104 (262)
T ss_dssp             TTCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            5678887775 45666666654   38899999999988888777776654  46889999998742     0     01


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +..|+++.+..+
T Consensus       105 g~id~lv~~Ag~  116 (262)
T 3rkr_A          105 GRCDVLVNNAGV  116 (262)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            468999877655

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=85.06  E-value=5.4  Score=30.78  Aligned_cols=92  Identities=16%  Similarity=0.124  Sum_probs=58.6

Q ss_pred             eEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC-CCCCeeEEEecccc
Q psy2408          91 RFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF-DNDSFDGGWFFESI  166 (298)
Q Consensus        91 ~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~V~~~~~l  166 (298)
                      +||=.| |+|.++..+++.   .|.+|++++.++..+....        ..++.++.+|+.+... .-+.+|+|+.+...
T Consensus         2 kilVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--------~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   72 (224)
T 3h2s_A            2 KIAVLG-ATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL--------GATVATLVKEPLVLTEADLDSVDAVVDALSV   72 (224)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT--------CTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred             EEEEEc-CCCHHHHHHHHHHHHCCCEEEEEEeccccccccc--------CCCceEEecccccccHhhcccCCEEEECCcc
Confidence            577676 577777777765   3789999999986544321        1358899999877531 01468999876655


Q ss_pred             ccc---Ch-H-HHHHHHhhcccC-CcEEEEE
Q psy2408         167 FHM---NH-S-AALNEARRVLKS-GSILTLT  191 (298)
Q Consensus       167 ~~~---~~-~-~~l~~~~r~Lkp-gG~l~i~  191 (298)
                      .+-   .. . ....++.+.++. |+++++.
T Consensus        73 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~  103 (224)
T 3h2s_A           73 PWGSGRGYLHLDFATHLVSLLRNSDTLAVFI  103 (224)
T ss_dssp             CTTSSCTHHHHHHHHHHHHTCTTCCCEEEEE
T ss_pred             CCCcchhhHHHHHHHHHHHHHHHcCCcEEEE
Confidence            321   11 2 555666666654 3566554

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=84.51  E-value=6.4  Score=31.25  Aligned_cols=76  Identities=21%  Similarity=0.159  Sum_probs=52.3

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC-----C
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD-----N  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~  154 (298)
                      .+.+||=.| |+|.++..+++.   .|++|++++.++..++...+.+...+  .++.++.+|+.+..     +.     .
T Consensus        12 ~~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           12 DNRVAIVTG-GAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQE   88 (260)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            456888777 456677766665   37899999999887766655555443  35889999988741     00     1


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +.+|+|+.+...
T Consensus        89 ~~id~vi~~Ag~  100 (260)
T 3awd_A           89 GRVDILVACAGI  100 (260)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            368999876554

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=84.38  E-value=6.4  Score=31.70  Aligned_cols=77  Identities=17%  Similarity=0.002  Sum_probs=53.8

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  154 (298)
                      .+.+||=.|+ +|.++..+++.   .|++|+++|.++..++...+.+...+  .++.++.+|+.+..     +     ..
T Consensus        30 ~~k~vlITGa-sggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  106 (272)
T 1yb1_A           30 TGEIVLITGA-GHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI  106 (272)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            4568887774 56677777665   38899999999887777666665543  46889999987741     0     01


Q ss_pred             CCeeEEEeccccc
Q psy2408         155 DSFDGGWFFESIF  167 (298)
Q Consensus       155 ~~fD~V~~~~~l~  167 (298)
                      +.+|+|+.+..+.
T Consensus       107 g~iD~li~~Ag~~  119 (272)
T 1yb1_A          107 GDVSILVNNAGVV  119 (272)
T ss_dssp             CCCSEEEECCCCC
T ss_pred             CCCcEEEECCCcC
Confidence            4689998776543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=84.36  E-value=5.9  Score=31.24  Aligned_cols=77  Identities=22%  Similarity=0.113  Sum_probs=54.7

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FDN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  154 (298)
                      .+.++|=.|+ +|.++..+++.   .|++|++++.++..++...+.+...+  .++.++..|+.+..          -..
T Consensus         4 ~~k~vlITGa-s~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            4 NEKVALVTGA-SRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAEN   80 (247)
T ss_dssp             TTCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            3567887774 55666666654   48899999999988888777776654  45889999988741          012


Q ss_pred             CCeeEEEeccccc
Q psy2408         155 DSFDGGWFFESIF  167 (298)
Q Consensus       155 ~~fD~V~~~~~l~  167 (298)
                      +.+|+++.+..+.
T Consensus        81 ~~id~li~~Ag~~   93 (247)
T 3lyl_A           81 LAIDILVNNAGIT   93 (247)
T ss_dssp             CCCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            4689998776543

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=84.27  E-value=13  Score=30.39  Aligned_cols=90  Identities=17%  Similarity=0.111  Sum_probs=50.7

Q ss_pred             CeEEEeCCCC-CHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE--------C---CCCCCCCCCCC
Q psy2408          90 QRFIDIGCGF-GLS-GIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH--------G---DALNLPFDNDS  156 (298)
Q Consensus        90 ~~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~--------~---d~~~~~~~~~~  156 (298)
                      ++|.-||+|. |.. +..+++ .|.+|+++|.+++.++..++.    +    +....        .   +..+..-.-..
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~-~g~~V~~~~r~~~~~~~~~~~----g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQ-GGNDVTLIDQWPAHIEAIRKN----G----LIADFNGEEVVANLPIFSPEEIDHQNEQ   74 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHH----C----EEEEETTEEEEECCCEECGGGCCTTSCC
T ss_pred             CeEEEECcCHHHHHHHHHHHh-CCCcEEEEECCHHHHHHHHhC----C----EEEEeCCCeeEecceeecchhhcccCCC
Confidence            4788899875 322 333333 478999999999877766543    2    11111        0   11111000026


Q ss_pred             eeEEEecccccccChH-HHHHHHhhcccCCcEEEEE
Q psy2408         157 FDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~  191 (298)
                      +|+|+..-.-.   .. .+++.+...++|+..++..
T Consensus        75 ~d~vi~~v~~~---~~~~v~~~l~~~l~~~~~iv~~  107 (316)
T 2ew2_A           75 VDLIIALTKAQ---QLDAMFKAIQPMITEKTYVLCL  107 (316)
T ss_dssp             CSEEEECSCHH---HHHHHHHHHGGGCCTTCEEEEC
T ss_pred             CCEEEEEeccc---cHHHHHHHHHHhcCCCCEEEEe
Confidence            89887643211   12 7888888888887665543

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=84.06  E-value=6.4  Score=32.32  Aligned_cols=77  Identities=18%  Similarity=0.160  Sum_probs=55.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC-----C
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD-----N  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~  154 (298)
                      .+.+||-.|++ |.++..+++.   .|++|++++.++..++.+.+.+...+  .++.++..|+.+..     +.     .
T Consensus        30 ~gk~vlVTGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           30 DGRAAVVTGGA-SGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRLL  106 (301)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhC
Confidence            56788888866 5555556554   48899999999998888877776654  46889999998742     00     1


Q ss_pred             CCeeEEEeccccc
Q psy2408         155 DSFDGGWFFESIF  167 (298)
Q Consensus       155 ~~fD~V~~~~~l~  167 (298)
                      +.+|+++.+..+.
T Consensus       107 g~id~lvnnAg~~  119 (301)
T 3tjr_A          107 GGVDVVFSNAGIV  119 (301)
T ss_dssp             SSCSEEEECCCCC
T ss_pred             CCCCEEEECCCcC
Confidence            4789998876543

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=83.71  E-value=6.2  Score=31.17  Aligned_cols=76  Identities=16%  Similarity=-0.025  Sum_probs=52.4

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC-----C
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD-----N  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~  154 (298)
                      .+.+||=.| |+|.++..+++.   .|++|+++|.++..++...+.+...+  .++.++.+|+.+..     +.     .
T Consensus        10 ~~~~vlVtG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   86 (255)
T 1fmc_A           10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            456788776 567777777765   37899999999887766655555433  35888899987641     00     1


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +.+|+|+.+...
T Consensus        87 ~~~d~vi~~Ag~   98 (255)
T 1fmc_A           87 GKVDILVNNAGG   98 (255)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            368999876554

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=83.65  E-value=6.8  Score=31.26  Aligned_cols=77  Identities=13%  Similarity=-0.030  Sum_probs=54.2

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC-----C
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD-----N  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~  154 (298)
                      .+.++|-.|++ |.++..+++.   .|++|+.+|.++..++...+.+...+  .++.++..|+.+..     +.     .
T Consensus        11 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   87 (256)
T 3gaf_A           11 NDAVAIVTGAA-AGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQF   87 (256)
T ss_dssp             TTCEEEECSCS-SHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45678877755 5555566554   48999999999988887777776554  46889999998742     00     1


Q ss_pred             CCeeEEEeccccc
Q psy2408         155 DSFDGGWFFESIF  167 (298)
Q Consensus       155 ~~fD~V~~~~~l~  167 (298)
                      +..|+++.+..+.
T Consensus        88 g~id~lv~nAg~~  100 (256)
T 3gaf_A           88 GKITVLVNNAGGG  100 (256)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            4689998776553

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=83.48  E-value=8.4  Score=30.83  Aligned_cols=76  Identities=14%  Similarity=0.042  Sum_probs=54.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  154 (298)
                      .+.++|-.|++.| ++..+++.   .|++|+.+|.+++.++...+.+...+  .++.++..|+.+..     +     ..
T Consensus        10 ~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A           10 TDKVVVISGVGPA-LGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKAY   86 (264)
T ss_dssp             TTCEEEEESCCTT-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCcH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4678888887655 44444443   48899999999988888777776654  46889999998742     0     01


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +..|+++.+...
T Consensus        87 g~id~lv~nAg~   98 (264)
T 3ucx_A           87 GRVDVVINNAFR   98 (264)
T ss_dssp             SCCSEEEECCCS
T ss_pred             CCCcEEEECCCC
Confidence            478999876643

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=83.21  E-value=9.8  Score=31.44  Aligned_cols=97  Identities=16%  Similarity=0.128  Sum_probs=50.0

Q ss_pred             CCeEEEeCCCC-CHH-HHHHHHhcCC--eEEEEeCCHHHHHH-HHHHHHhcCCCCceEEEEC-CCCCCCCCCCCeeEEEe
Q psy2408          89 GQRFIDIGCGF-GLS-GIRLAKAKGC--RVDGITISKFQQES-AMKTAKAEGLLDKVNFLHG-DALNLPFDNDSFDGGWF  162 (298)
Q Consensus        89 ~~~vLDiGcG~-G~~-~~~l~~~~~~--~v~~vD~s~~~l~~-a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~fD~V~~  162 (298)
                      ..+|.=+|+|. |.. +..++. .+.  +|+.+|.+++.++. +.+......+.....+... |...+    ...|+|+.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~-~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~aD~Vii   81 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQ-RGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEIC----RDADMVVI   81 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGG----TTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-CCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHh----CCCCEEEE
Confidence            46899999975 333 222333 455  89999999866652 2211111111112233322 32221    35899887


Q ss_pred             cccccccCh-------------H-HHHHHHhhcccCCcEEEEE
Q psy2408         163 FESIFHMNH-------------S-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       163 ~~~l~~~~~-------------~-~~l~~~~r~LkpgG~l~i~  191 (298)
                      .--....+.             . .+++.+... .|++.++..
T Consensus        82 ~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~  123 (319)
T 1lld_A           82 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLI  123 (319)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEEC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEe
Confidence            553333320             0 445555553 688876654

>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}

Probab=83.03  E-value=0.77  Score=33.02  Aligned_cols=70  Identities=10%  Similarity=0.094  Sum_probs=41.5

Q ss_pred             CHHHHHHHHHHHHhcCCCCceEEEECCC---CCCCCCCCCeeEEEeccccc--ccChH-HHHHHHhhcccCCcEEEE
Q psy2408         120 SKFQQESAMKTAKAEGLLDKVNFLHGDA---LNLPFDNDSFDGGWFFESIF--HMNHS-AALNEARRVLKSGSILTL  190 (298)
Q Consensus       120 s~~~l~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~fD~V~~~~~l~--~~~~~-~~l~~~~r~LkpgG~l~i  190 (298)
                      .++.++.++......+ .......-.|=   -...++.+.||.|+...--.  +..-+ .++..+.+.|||||.|..
T Consensus        21 ~pe~le~~k~~~~~~~-~~~~d~qmlDRLa~G~VsLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g   96 (136)
T 2km1_A           21 TPELVENTKAQAASKK-VKFVDQFLINKLNDGSITLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG   96 (136)
T ss_dssp             SHHHHHHHHHHHHHTT-EEEEEEEEHHHHHHTCCCCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred             CHHHHHHHHHhhhccc-cchhhHHHHHHHhcCcccCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence            4667777776665420 01122222220   11245679999997643222  22333 999999999999999876

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=82.98  E-value=4  Score=32.58  Aligned_cols=77  Identities=18%  Similarity=0.148  Sum_probs=54.6

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C----CCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F----DND  155 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~----~~~  155 (298)
                      .+.++|-.|++ |.++..+++.   .|++|+++|.++..++...+.+...+  .++.++.+|+.+..     +    ..+
T Consensus         6 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~g   82 (252)
T 3h7a_A            6 RNATVAVIGAG-DYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAHA   82 (252)
T ss_dssp             CSCEEEEECCS-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence            45678888765 4455555554   48899999999888887777776654  46899999998742     0    014


Q ss_pred             CeeEEEeccccc
Q psy2408         156 SFDGGWFFESIF  167 (298)
Q Consensus       156 ~fD~V~~~~~l~  167 (298)
                      ..|+++.+..+.
T Consensus        83 ~id~lv~nAg~~   94 (252)
T 3h7a_A           83 PLEVTIFNVGAN   94 (252)
T ss_dssp             CEEEEEECCCCC
T ss_pred             CceEEEECCCcC
Confidence            789998776653

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=82.93  E-value=8  Score=30.70  Aligned_cols=78  Identities=18%  Similarity=0.021  Sum_probs=53.8

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCCC-----C-----C
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGDALNLP-----F-----D  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d~~~~~-----~-----~  153 (298)
                      .+.++|-.|++ |.++..+++.   .|++|+.++.++..++...+.+...... .++.++..|+.+..     +     .
T Consensus         6 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            6 QKGLAIITGAS-QGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCCEEEEESTT-SHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            45678877765 4555555554   4899999999998888777766554222 45788999998742     0     0


Q ss_pred             CCCeeEEEecccc
Q psy2408         154 NDSFDGGWFFESI  166 (298)
Q Consensus       154 ~~~fD~V~~~~~l  166 (298)
                      .+..|+++.+..+
T Consensus        85 ~g~iD~lvnnAg~   97 (250)
T 3nyw_A           85 YGAVDILVNAAAM   97 (250)
T ss_dssp             HCCEEEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1478999987665

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=82.89  E-value=6.9  Score=31.71  Aligned_cols=77  Identities=16%  Similarity=0.066  Sum_probs=53.3

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  154 (298)
                      .+.++|-.|++ |.++..+++.   .|++|++++.++..++...+.+...+  .++.++.+|+.+..     +     .-
T Consensus        23 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           23 RPQTAFVTGVS-SGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVERF   99 (279)
T ss_dssp             --CEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            46688888855 5555555554   48999999999988887777766544  46889999998742     0     01


Q ss_pred             CCeeEEEeccccc
Q psy2408         155 DSFDGGWFFESIF  167 (298)
Q Consensus       155 ~~fD~V~~~~~l~  167 (298)
                      +..|+++.+..+.
T Consensus       100 g~id~lv~nAg~~  112 (279)
T 3sju_A          100 GPIGILVNSAGRN  112 (279)
T ss_dssp             CSCCEEEECCCCC
T ss_pred             CCCcEEEECCCCC
Confidence            4689998776543

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=82.86  E-value=0.15  Score=48.63  Aligned_cols=96  Identities=13%  Similarity=0.140  Sum_probs=59.9

Q ss_pred             HhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCC
Q psy2408          82 NKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFD  153 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~  153 (298)
                      +..++.+|.+||-.|+ | .|..+..+++..|++|++++.++ ..+..+     .+.   -.++...-.++      -..
T Consensus       339 ~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~-k~~~l~-----lga---~~v~~~~~~~~~~~i~~~t~  409 (795)
T 3slk_A          339 DLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASED-KWQAVE-----LSR---EHLASSRTCDFEQQFLGATG  409 (795)
T ss_dssp             CCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGG-GGGGSC-----SCG---GGEECSSSSTHHHHHHHHSC
T ss_pred             HHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChH-Hhhhhh-----cCh---hheeecCChhHHHHHHHHcC
Confidence            3456789999999994 4 58888899988899999998654 211111     121   11221111111      012


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ...+|+|+-+..-      ..+....++|+|+|+++...
T Consensus       410 g~GvDvVld~~gg------~~~~~~l~~l~~~Gr~v~iG  442 (795)
T 3slk_A          410 GRGVDVVLNSLAG------EFADASLRMLPRGGRFLELG  442 (795)
T ss_dssp             SSCCSEEEECCCT------TTTHHHHTSCTTCEEEEECC
T ss_pred             CCCeEEEEECCCc------HHHHHHHHHhcCCCEEEEec
Confidence            3469999863321      35577889999999988754

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=82.78  E-value=5.1  Score=32.00  Aligned_cols=76  Identities=18%  Similarity=-0.014  Sum_probs=53.0

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  154 (298)
                      .+.++|-.|+ +|.++..+++.   .|++|+.+|.+++.++.+.+.+...+  .++.++..|+.+..     +     ..
T Consensus         5 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            5 KEKVVIITGG-SSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3567887775 45566666554   48899999999988888777665433  46889999998741     0     01


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +..|+++.+..+
T Consensus        82 g~id~lv~nAg~   93 (257)
T 3imf_A           82 GRIDILINNAAG   93 (257)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            468999876653

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=82.76  E-value=2  Score=36.01  Aligned_cols=101  Identities=14%  Similarity=0.142  Sum_probs=59.1

Q ss_pred             CCCeEEEeCCCC-CHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh-------cC-CCC---------ceEEEECCCC
Q psy2408          88 KGQRFIDIGCGF-GLS-GIRLAKAKGCRVDGITISKFQQESAMKTAKA-------EG-LLD---------KVNFLHGDAL  148 (298)
Q Consensus        88 ~~~~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~-~~~---------~i~~~~~d~~  148 (298)
                      ...+|--||+|+ |.- +..++. .|..|+.+|++++.++.+.+++..       .+ +..         ++++ ..|+.
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~-~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~-~~~l~   82 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFAS-GGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS-CTNLA   82 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE-ECCHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc-ccchH
Confidence            345899999987 332 333333 689999999999998887776542       11 110         1221 12221


Q ss_pred             CCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         149 NLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       149 ~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      + .+  ...|+|+ -.+.+.+.-. ++++++-++++|+..|.-.+..
T Consensus        83 ~-a~--~~ad~Vi-Eav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs  125 (319)
T 3ado_A           83 E-AV--EGVVHIQ-ECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC  125 (319)
T ss_dssp             H-HT--TTEEEEE-ECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS
T ss_pred             h-Hh--ccCcEEe-eccccHHHHHHHHHHHHHHHhhhcceeehhhhh
Confidence            1 01  3456653 2233333334 9999999999999876554433

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=82.71  E-value=7.4  Score=31.52  Aligned_cols=102  Identities=18%  Similarity=0.184  Sum_probs=62.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHH-HHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC-----
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKF-QQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD-----  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~-~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----  153 (298)
                      .+.++|-.|+ +|.++..+++.   .|++|++++.+.. ..+...+.+...+  .++.++..|+.+..     +.     
T Consensus        28 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           28 EGKVALVTGA-GRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            3567777765 56666666665   3889999998754 3444444444433  35888899987631     00     


Q ss_pred             CCCeeEEEecccccccC------h-------------H-HHHHHHhhcccCCcEEEEEe
Q psy2408         154 NDSFDGGWFFESIFHMN------H-------------S-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~------~-------------~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      -+.+|+++.+..+....      .             . .+++.+.+.|+.+|+++...
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  163 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  163 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            14689998776543321      1             1 34466667776778877654

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=82.66  E-value=8.4  Score=30.84  Aligned_cols=79  Identities=14%  Similarity=0.010  Sum_probs=52.6

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  154 (298)
                      .+.++|-.|+ +|.++..+++.   .|++|++++.+++.++...+.+.......++.++.+|+.+..     +     ..
T Consensus        12 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           12 TDRVVLITGG-GSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4568888875 56666666654   488999999998877766655544311245888999988741     0     01


Q ss_pred             CCeeEEEeccccc
Q psy2408         155 DSFDGGWFFESIF  167 (298)
Q Consensus       155 ~~fD~V~~~~~l~  167 (298)
                      +.+|+++.+..+.
T Consensus        91 g~id~lv~nAg~~  103 (267)
T 1iy8_A           91 GRIDGFFNNAGIE  103 (267)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCCcC
Confidence            3689998876543

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=82.22  E-value=11  Score=30.14  Aligned_cols=75  Identities=19%  Similarity=0.198  Sum_probs=48.2

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CCCCCeeE
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FDNDSFDG  159 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~  159 (298)
                      .|+++|--|++.| ++..+++.   .|++|..+|.+..  +.+.+.+...+  .++.++..|+.+..     +..+..|+
T Consensus         8 ~GKvalVTGas~G-IG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iDi   82 (247)
T 4hp8_A            8 EGRKALVTGANTG-LGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFDI   82 (247)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCCE
Confidence            4667777776554 44445443   4899999998743  23334444444  45888999987642     33467999


Q ss_pred             EEeccccc
Q psy2408         160 GWFFESIF  167 (298)
Q Consensus       160 V~~~~~l~  167 (298)
                      ++.+..+.
T Consensus        83 LVNNAGi~   90 (247)
T 4hp8_A           83 LVNNAGII   90 (247)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCCC
Confidence            99876543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=82.08  E-value=4.9  Score=33.09  Aligned_cols=84  Identities=14%  Similarity=0.162  Sum_probs=48.6

Q ss_pred             CCeEEEeCCCC-CHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          89 GQRFIDIGCGF-GLS-GIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        89 ~~~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      ..+|.-||+|. |.. +..+++ .|.+|+++|.+++.++.+.+.    +.    .....+..+.-   ...|+|+.+   
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~-~G~~V~~~dr~~~~~~~~~~~----g~----~~~~~~~~e~~---~~aDvvi~~---   71 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLR-AGLSTWGADLNPQACANLLAE----GA----CGAAASAREFA---GVVDALVIL---   71 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHT----TC----SEEESSSTTTT---TTCSEEEEC---
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-CCCeEEEEECCHHHHHHHHHc----CC----ccccCCHHHHH---hcCCEEEEE---
Confidence            35788898875 322 333333 578999999999877765542    32    12234444431   356888653   


Q ss_pred             cccChH----HHH---HHHhhcccCCcEEE
Q psy2408         167 FHMNHS----AAL---NEARRVLKSGSILT  189 (298)
Q Consensus       167 ~~~~~~----~~l---~~~~r~LkpgG~l~  189 (298)
                        ++++    ..+   +.+...++||..++
T Consensus        72 --vp~~~~~~~v~~~~~~l~~~l~~g~ivv   99 (303)
T 3g0o_A           72 --VVNAAQVRQVLFGEDGVAHLMKPGSAVM   99 (303)
T ss_dssp             --CSSHHHHHHHHC--CCCGGGSCTTCEEE
T ss_pred             --CCCHHHHHHHHhChhhHHhhCCCCCEEE
Confidence              3443    333   44556677776554

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=82.07  E-value=8.5  Score=31.11  Aligned_cols=78  Identities=14%  Similarity=0.064  Sum_probs=54.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCCC-----C-----C
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGDALNLP-----F-----D  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d~~~~~-----~-----~  153 (298)
                      .+.+||-.|+ +|.++..+++.   .|++|+.+|.+++.++...+.+...+.. .++.++.+|+.+..     +     .
T Consensus        10 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           10 QDRTYLVTGG-GSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4668888885 45566666554   4889999999998888777776654421 26889999998742     0     0


Q ss_pred             CCCeeEEEecccc
Q psy2408         154 NDSFDGGWFFESI  166 (298)
Q Consensus       154 ~~~fD~V~~~~~l  166 (298)
                      .+..|+++.+...
T Consensus        89 ~g~id~lv~nAg~  101 (281)
T 3svt_A           89 HGRLHGVVHCAGG  101 (281)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1468999876654

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=81.88  E-value=7.3  Score=31.25  Aligned_cols=79  Identities=16%  Similarity=0.019  Sum_probs=54.2

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-CCCCee
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-DNDSFD  158 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~~fD  158 (298)
                      .+.++|-.|++ |.++..+++.   .|++|+.+|.++..++...+.+...+....+.++..|+.+..     + .-+..|
T Consensus         9 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A            9 KGKTALVTGST-AGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            45678877754 5566666654   488999999999888777766665543446788889987631     0 124689


Q ss_pred             EEEeccccc
Q psy2408         159 GGWFFESIF  167 (298)
Q Consensus       159 ~V~~~~~l~  167 (298)
                      +++.+..+.
T Consensus        88 ~lv~nAg~~   96 (267)
T 3t4x_A           88 ILINNLGIF   96 (267)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            998766543

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=81.87  E-value=9.2  Score=31.07  Aligned_cols=84  Identities=13%  Similarity=0.108  Sum_probs=48.5

Q ss_pred             CeEEEeCC-CC-CHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          90 QRFIDIGC-GF-GLS-GIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        90 ~~vLDiGc-G~-G~~-~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      .+|.=||+ |. |.. +..+++ .|.+|+++|.+++.++.+.+    .++    ..  .+..+.   -...|+|+..-.-
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~-~g~~V~~~~r~~~~~~~~~~----~g~----~~--~~~~~~---~~~aDvVi~av~~   77 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHD-SAHHLAAIEIAPEGRDRLQG----MGI----PL--TDGDGW---IDEADVVVLALPD   77 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-SSSEEEEECCSHHHHHHHHH----TTC----CC--CCSSGG---GGTCSEEEECSCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHh----cCC----Cc--CCHHHH---hcCCCEEEEcCCc
Confidence            48999998 75 333 333333 57899999999887766554    232    11  122211   1357888753322


Q ss_pred             cccChHHHHHHHhhcccCCcEEE
Q psy2408         167 FHMNHSAALNEARRVLKSGSILT  189 (298)
Q Consensus       167 ~~~~~~~~l~~~~r~LkpgG~l~  189 (298)
                      ..  -..++.++...++|+..++
T Consensus        78 ~~--~~~v~~~l~~~l~~~~ivv   98 (286)
T 3c24_A           78 NI--IEKVAEDIVPRVRPGTIVL   98 (286)
T ss_dssp             HH--HHHHHHHHGGGSCTTCEEE
T ss_pred             hH--HHHHHHHHHHhCCCCCEEE
Confidence            11  0167777777777766444

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=81.78  E-value=8  Score=31.13  Aligned_cols=76  Identities=12%  Similarity=0.017  Sum_probs=53.4

Q ss_pred             CCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CCC
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DND  155 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~  155 (298)
                      +.++|-.|++ |.++..+++.   .|++|+.++.++..++...+.+...+  .++.++..|+.+..     +     .-+
T Consensus         4 ~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            4 DKVILITGAS-GGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             TCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5577777755 5555555554   48899999999988888777776654  46888899988741     0     014


Q ss_pred             CeeEEEeccccc
Q psy2408         156 SFDGGWFFESIF  167 (298)
Q Consensus       156 ~fD~V~~~~~l~  167 (298)
                      ..|+++.+..+.
T Consensus        81 ~iD~lVnnAG~~   92 (264)
T 3tfo_A           81 RIDVLVNNAGVM   92 (264)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689998776553

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=81.71  E-value=3.8  Score=34.86  Aligned_cols=93  Identities=10%  Similarity=0.097  Sum_probs=54.1

Q ss_pred             CCeEEEeCCCC-CHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh------cCCCCceEEEECCCCCCCCCCCCeeEE
Q psy2408          89 GQRFIDIGCGF-GLS-GIRLAKAKGCRVDGITISKFQQESAMKTAKA------EGLLDKVNFLHGDALNLPFDNDSFDGG  160 (298)
Q Consensus        89 ~~~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~------~~~~~~i~~~~~d~~~~~~~~~~fD~V  160 (298)
                      ..+|.=||+|. |.. +..+++ .|..|+..|.+++.++..++.-..      ..++.++.+ ..|..+.   -...|+|
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~-~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~ea---~~~aDvV  103 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLAR-KGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKAS---LEGVTDI  103 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHT-TTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHHH---HTTCCEE
T ss_pred             CCeEEEECccHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHHH---HhcCCEE
Confidence            45899999875 332 333333 578999999999887776654211      011112222 1222110   1356887


Q ss_pred             EecccccccChH---HHHHHHhhcccCCcEEEEE
Q psy2408         161 WFFESIFHMNHS---AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       161 ~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~  191 (298)
                      +..     ++..   .+++++...++|+..++..
T Consensus       104 ila-----Vp~~~~~~vl~~i~~~l~~~~ivvs~  132 (356)
T 3k96_A          104 LIV-----VPSFAFHEVITRMKPLIDAKTRIAWG  132 (356)
T ss_dssp             EEC-----CCHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             EEC-----CCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            653     3443   8888899999888765543

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=81.59  E-value=9.5  Score=30.53  Aligned_cols=79  Identities=9%  Similarity=-0.183  Sum_probs=53.6

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  154 (298)
                      .+.++|-.|++. .++..+++.   .|++|+.+|.+++.++.+.+.+.......++.++..|+.+..     +     .-
T Consensus         7 ~~k~~lVTGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            7 SEAVAVVTGGSS-GIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            466888888654 455555554   488999999999888877776665222234888999998742     0     01


Q ss_pred             CCeeEEEeccccc
Q psy2408         155 DSFDGGWFFESIF  167 (298)
Q Consensus       155 ~~fD~V~~~~~l~  167 (298)
                      +..|+++.+..+.
T Consensus        86 g~id~lvnnAg~~   98 (265)
T 3lf2_A           86 GCASILVNNAGQG   98 (265)
T ss_dssp             CSCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            4689998776553

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=81.55  E-value=3.8  Score=32.98  Aligned_cols=78  Identities=17%  Similarity=0.011  Sum_probs=55.8

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FDN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  154 (298)
                      .|+++|--|++. .++..+++.   .|++|..+|.+++.++...+.+...+  .++.++.+|+.+..          -.-
T Consensus         8 ~gKvalVTGas~-GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            8 TGKTALVTGSAR-GLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAEG   84 (255)
T ss_dssp             TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            466777777655 455555554   48999999999999888888777765  35888899988731          113


Q ss_pred             CCeeEEEecccccc
Q psy2408         155 DSFDGGWFFESIFH  168 (298)
Q Consensus       155 ~~fD~V~~~~~l~~  168 (298)
                      +..|+++.+..+..
T Consensus        85 G~iDiLVNNAG~~~   98 (255)
T 4g81_D           85 IHVDILINNAGIQY   98 (255)
T ss_dssp             CCCCEEEECCCCCC
T ss_pred             CCCcEEEECCCCCC
Confidence            67899998765543

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=81.53  E-value=9.8  Score=30.44  Aligned_cols=88  Identities=11%  Similarity=0.046  Sum_probs=50.1

Q ss_pred             CCeEEEeCCCC-CHH-HHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc
Q psy2408          89 GQRFIDIGCGF-GLS-GIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        89 ~~~vLDiGcG~-G~~-~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      +.+|.=||||. |.. +..++. .|.+ |+++|.+++.++.+.+..   +    +.. ..|..+. .  ...|+|+..-.
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~-~g~~~v~~~~~~~~~~~~~~~~~---g----~~~-~~~~~~~-~--~~~Dvvi~av~   77 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYR-KGFRIVQVYSRTEESARELAQKV---E----AEY-TTDLAEV-N--PYAKLYIVSLK   77 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHH-HTCCEEEEECSSHHHHHHHHHHT---T----CEE-ESCGGGS-C--SCCSEEEECCC
T ss_pred             CCeEEEEcCCHHHHHHHHHHHH-CCCeEEEEEeCCHHHHHHHHHHc---C----Cce-eCCHHHH-h--cCCCEEEEecC
Confidence            45788999864 332 223333 4677 899999998776655432   2    222 2333332 1  35798876432


Q ss_pred             ccccChHHHHHHHhhcccCCcEEEE
Q psy2408         166 IFHMNHSAALNEARRVLKSGSILTL  190 (298)
Q Consensus       166 l~~~~~~~~l~~~~r~LkpgG~l~i  190 (298)
                      -...  ..++..+...++++..++-
T Consensus        78 ~~~~--~~v~~~l~~~~~~~~ivv~  100 (266)
T 3d1l_A           78 DSAF--AELLQGIVEGKREEALMVH  100 (266)
T ss_dssp             HHHH--HHHHHHHHTTCCTTCEEEE
T ss_pred             HHHH--HHHHHHHHhhcCCCcEEEE
Confidence            2111  1677777777777765444

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=81.34  E-value=10  Score=29.89  Aligned_cols=76  Identities=20%  Similarity=0.088  Sum_probs=52.3

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC-----C
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD-----N  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~  154 (298)
                      .+.++|-.|++ |.++..+++.   .|++|++++.+++.++...+.+...+  .++.++..|+.+..     +.     -
T Consensus         6 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            6 QGKVALITGAS-SGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEAL   82 (247)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35678888854 5666666654   38899999999888777666655443  35888999987741     00     1


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +.+|+++.+..+
T Consensus        83 g~id~lv~nAg~   94 (247)
T 2jah_A           83 GGLDILVNNAGI   94 (247)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            468999876554

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=81.18  E-value=6.8  Score=32.54  Aligned_cols=95  Identities=17%  Similarity=0.098  Sum_probs=53.4

Q ss_pred             CCCeEEEeCCCC-CH-HHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEE-----EECCCCCCCCCCCCeeEE
Q psy2408          88 KGQRFIDIGCGF-GL-SGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNF-----LHGDALNLPFDNDSFDGG  160 (298)
Q Consensus        88 ~~~~vLDiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~-----~~~d~~~~~~~~~~fD~V  160 (298)
                      ...+|.-||+|. |. ++..|++ .|..|+.+ .+++.++..++.-.....+ ...+     ...|...    ...+|+|
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~-~G~~V~l~-~~~~~~~~i~~~g~~~~~~-~~~~~~~~~~~~~~~~----~~~~D~v   90 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLAR-AGHEVILI-ARPQHVQAIEATGLRLETQ-SFDEQVKVSASSDPSA----VQGADLV   90 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHH-TTCEEEEE-CCHHHHHHHHHHCEEEECS-SCEEEECCEEESCGGG----GTTCSEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHH-CCCeEEEE-EcHhHHHHHHhCCeEEEcC-CCcEEEeeeeeCCHHH----cCCCCEE
Confidence            346899999986 43 3444444 57899999 8888777766531000000 0011     0112111    1468988


Q ss_pred             EecccccccChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         161 WFFESIFHMNHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       161 ~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +..---.   .. .+++.+...++|+..++...
T Consensus        91 ilavk~~---~~~~~l~~l~~~l~~~~~iv~~~  120 (318)
T 3hwr_A           91 LFCVKST---DTQSAALAMKPALAKSALVLSLQ  120 (318)
T ss_dssp             EECCCGG---GHHHHHHHHTTTSCTTCEEEEEC
T ss_pred             EEEcccc---cHHHHHHHHHHhcCCCCEEEEeC
Confidence            7643222   22 78888999999887665543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=81.12  E-value=0.45  Score=38.57  Aligned_cols=51  Identities=8%  Similarity=0.031  Sum_probs=31.5

Q ss_pred             EEEECCCCCC--CCCCCCeeEEEeccccccc--------------ChH-HHHHHHhhcccCCcEEEEE
Q psy2408         141 NFLHGDALNL--PFDNDSFDGGWFFESIFHM--------------NHS-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       141 ~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~--------------~~~-~~l~~~~r~LkpgG~l~i~  191 (298)
                      .++++|..+.  .+++++||+|++.--...-              ... ..+.++.++|+|+|.+++.
T Consensus         6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A            6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            4566665432  2335677777763322111              112 7788899999999999886

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=81.07  E-value=9.9  Score=30.27  Aligned_cols=76  Identities=13%  Similarity=0.052  Sum_probs=52.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC------
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD------  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~------  153 (298)
                      .+.+||-.|+ +|.++..+++.   .|++|++++.++..++...+.+...+  .++.++.+|+.+..     +.      
T Consensus         8 ~~k~vlVTGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            8 EGCTALVTGG-SRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   84 (260)
T ss_dssp             TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4568887775 56666666654   38899999999887776665555433  35888999987741     00      


Q ss_pred             CCCeeEEEecccc
Q psy2408         154 NDSFDGGWFFESI  166 (298)
Q Consensus       154 ~~~fD~V~~~~~l  166 (298)
                      .+.+|+++.+..+
T Consensus        85 ~g~id~lv~~Ag~   97 (260)
T 2ae2_A           85 HGKLNILVNNAGI   97 (260)
T ss_dssp             TTCCCEEEECCCC
T ss_pred             CCCCCEEEECCCC
Confidence            1578999887654

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=80.69  E-value=11  Score=30.51  Aligned_cols=76  Identities=14%  Similarity=0.082  Sum_probs=52.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  154 (298)
                      .+.+||-.|+ +|.++..+++.   .|++|++++.++..++...+.+...+  .++.++.+|+.+..     +     .-
T Consensus        21 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   97 (277)
T 2rhc_B           21 DSEVALVTGA-TSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERY   97 (277)
T ss_dssp             TSCEEEEETC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHh
Confidence            3567888875 55666666654   48899999999887776666555443  35888999987631     0     01


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +.+|+++.+..+
T Consensus        98 g~iD~lv~~Ag~  109 (277)
T 2rhc_B           98 GPVDVLVNNAGR  109 (277)
T ss_dssp             CSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            468999877654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=80.50  E-value=1.5  Score=31.19  Aligned_cols=89  Identities=13%  Similarity=0.057  Sum_probs=49.5

Q ss_pred             CCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEE
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGW  161 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~  161 (298)
                      +.+|+=+|+  |..+..+++.   .|.+|+++|.++..++.++.    .    ...++.+|..+..    ...+.+|+|+
T Consensus         6 ~~~v~I~G~--G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----~----~~~~~~~d~~~~~~l~~~~~~~~d~vi   75 (144)
T 2hmt_A            6 NKQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----Y----ATHAVIANATEENELLSLGIRNFEYVI   75 (144)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT----T----CSEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----h----CCEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence            457999997  5555555543   47899999999865543321    1    2356677765421    1124688887


Q ss_pred             ecccccccChH-HHHHHHhhcccCCcEEEE
Q psy2408         162 FFESIFHMNHS-AALNEARRVLKSGSILTL  190 (298)
Q Consensus       162 ~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i  190 (298)
                      ....-.  ... ..+....+.+.+. .++.
T Consensus        76 ~~~~~~--~~~~~~~~~~~~~~~~~-~ii~  102 (144)
T 2hmt_A           76 VAIGAN--IQASTLTTLLLKELDIP-NIWV  102 (144)
T ss_dssp             ECCCSC--HHHHHHHHHHHHHTTCS-EEEE
T ss_pred             ECCCCc--hHHHHHHHHHHHHcCCC-eEEE
Confidence            543221  012 3333444445664 5544

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=80.49  E-value=9.2  Score=31.07  Aligned_cols=76  Identities=17%  Similarity=0.095  Sum_probs=53.3

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  154 (298)
                      .+.++|-.|++ |.++..+++.   .|++|+.+|.++..++...+.+...+  .++.++..|+.+..     +     ..
T Consensus        27 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (283)
T 3v8b_A           27 PSPVALITGAG-SGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLKF  103 (283)
T ss_dssp             CCCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            46688888855 4555555554   48899999999988887777665443  46889999998741     0     01


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +..|+++.+..+
T Consensus       104 g~iD~lVnnAg~  115 (283)
T 3v8b_A          104 GHLDIVVANAGI  115 (283)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999877655

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=80.44  E-value=7.4  Score=26.30  Aligned_cols=67  Identities=15%  Similarity=-0.015  Sum_probs=43.0

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-C--CCCCeeEE
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-F--DNDSFDGG  160 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~--~~~~fD~V  160 (298)
                      .+.+|+-+|+  |.++..+++.   .| .+|+++|.++..++...    .    ..+.++..|+.+.. +  .-..+|+|
T Consensus         4 ~~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~~~~~d~v   73 (118)
T 3ic5_A            4 MRWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDEAGLAKALGGFDAV   73 (118)
T ss_dssp             TCEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCHHHHHHHTTTCSEE
T ss_pred             CcCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCHHHHHHHHcCCCEE
Confidence            3568999998  5565555543   46 78999999987766554    1    23667777776521 0  01357887


Q ss_pred             Eecc
Q psy2408         161 WFFE  164 (298)
Q Consensus       161 ~~~~  164 (298)
                      +...
T Consensus        74 i~~~   77 (118)
T 3ic5_A           74 ISAA   77 (118)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            7544

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=80.19  E-value=7.7  Score=30.40  Aligned_cols=88  Identities=10%  Similarity=0.028  Sum_probs=56.6

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEE
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAK---GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGG  160 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V  160 (298)
                      ...+|+=+|+  |..+..+++.+   +. |+++|.+++.++.+.     .    .+.++.+|..+..    ..-...|+|
T Consensus         8 ~~~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-----~----~~~~i~gd~~~~~~l~~a~i~~ad~v   75 (234)
T 2aef_A            8 KSRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR-----S----GANFVHGDPTRVSDLEKANVRGARAV   75 (234)
T ss_dssp             --CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-----T----TCEEEESCTTCHHHHHHTTCTTCSEE
T ss_pred             CCCEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-----c----CCeEEEcCCCCHHHHHhcCcchhcEE
Confidence            4568998987  56777777653   56 999999987766553     1    2678999987631    113568888


Q ss_pred             EecccccccChH---HHHHHHhhcccCCcEEEEEe
Q psy2408         161 WFFESIFHMNHS---AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       161 ~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ++..     ++.   ..+....+-+.|+..++...
T Consensus        76 i~~~-----~~d~~n~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           76 IVDL-----ESDSETIHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             EECC-----SCHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred             EEcC-----CCcHHHHHHHHHHHHHCCCCeEEEEE
Confidence            7642     222   44445566677876766643

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=80.11  E-value=8.8  Score=30.58  Aligned_cols=74  Identities=15%  Similarity=-0.014  Sum_probs=51.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--------C---C
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--------F---D  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~---~  153 (298)
                      .+.++|-.| |+|.++..+++.   .|++|++++.++..++...+.+...+  .++.++.+|+.+..        .   .
T Consensus         4 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T 2qq5_A            4 NGQVCVVTG-ASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLG--GQCVPVVCDSSQESEVRSLFEQVDREQ   80 (260)
T ss_dssp             TTCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS--SEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcC--CceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            355777777 456666666654   38899999999887776665555433  36888999988741        0   0


Q ss_pred             CCCeeEEEecc
Q psy2408         154 NDSFDGGWFFE  164 (298)
Q Consensus       154 ~~~fD~V~~~~  164 (298)
                      .+.+|+++.+.
T Consensus        81 ~g~id~lvnnA   91 (260)
T 2qq5_A           81 QGRLDVLVNNA   91 (260)
T ss_dssp             TTCCCEEEECC
T ss_pred             CCCceEEEECC
Confidence            25689998876

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=80.08  E-value=11  Score=30.65  Aligned_cols=85  Identities=15%  Similarity=0.170  Sum_probs=49.2

Q ss_pred             CeEEEeCCCC-CH-HHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          90 QRFIDIGCGF-GL-SGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        90 ~~vLDiGcG~-G~-~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      .+|.=||+|. |. ++..+++.. +.+|+++|.+++.++.+.+    .+..   .....|..+.   -...|+|+..-  
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~---~~~~~~~~~~---~~~aDvVilav--   74 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIV---DEATADFKVF---AALADVIILAV--   74 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSC---SEEESCTTTT---GGGCSEEEECS--
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCc---ccccCCHHHh---hcCCCEEEEcC--
Confidence            5788899886 33 334444422 5789999999887766543    2321   1122333322   13578886533  


Q ss_pred             cccChH---HHHHHHhhc-ccCCcEEE
Q psy2408         167 FHMNHS---AALNEARRV-LKSGSILT  189 (298)
Q Consensus       167 ~~~~~~---~~l~~~~r~-LkpgG~l~  189 (298)
                         +..   .++.++... ++++..++
T Consensus        75 ---p~~~~~~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           75 ---PIKKTIDFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             ---CHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred             ---CHHHHHHHHHHHHhcCCCCCCEEE
Confidence               333   667777777 77765444

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=80.04  E-value=12  Score=30.13  Aligned_cols=77  Identities=14%  Similarity=0.095  Sum_probs=53.3

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CC------
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FD------  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~------  153 (298)
                      .+.++|-.|+ +|.++..+++.   .|++|++++.++..++...+.+...+  .++.++..|+.+..     +.      
T Consensus        20 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   96 (273)
T 1ae1_A           20 KGTTALVTGG-SKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVF   96 (273)
T ss_dssp             TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4568888885 56666666654   48899999999887776666555443  35888999987641     00      


Q ss_pred             CCCeeEEEeccccc
Q psy2408         154 NDSFDGGWFFESIF  167 (298)
Q Consensus       154 ~~~fD~V~~~~~l~  167 (298)
                      ++.+|+++.+..+.
T Consensus        97 ~g~id~lv~nAg~~  110 (273)
T 1ae1_A           97 DGKLNILVNNAGVV  110 (273)
T ss_dssp             TSCCCEEEECCCCC
T ss_pred             CCCCcEEEECCCCC
Confidence            15789998876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	298
d2o57a1	282	c.66.1.18 (A:16-297) Putative sarcosine dimethylgl	1e-20
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	4e-17
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	9e-17
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-13
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	4e-13
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	3e-12
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	3e-12
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	2e-11
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	7e-11
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	2e-10
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-10
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	3e-10
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	1e-09
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	1e-09
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	2e-09
d2fk8a1	280	c.66.1.18 (A:22-301) Methoxy mycolic acid synthase	2e-09
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	3e-09
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	8e-09
d1kpga_	285	c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [	1e-08
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	1e-08
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	3e-08
d1xtpa_	254	c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa	6e-08
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	7e-08
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	6e-07
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	1e-06
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	2e-06
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	2e-06
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	4e-06
d1kpia_	291	c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [	2e-05
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	2e-05
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	3e-05
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	4e-05
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	7e-05
d2bzga1	229	c.66.1.36 (A:17-245) Thiopurine S-methyltransferas	7e-05
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	1e-04
d2h00a1	250	c.66.1.54 (A:5-254) Methyltransferase 10 domain co	6e-04
d1dusa_	194	c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeo	0.003
d2avna1	246	c.66.1.41 (A:1-246) Hypothetical methyltransferase	0.003
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	0.004

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

 Score = 87.5 bits (215), Expect = 1e-20
 Identities = 47/278 (16%), Positives = 108/278 (38%), Gaps = 16/278 (5%)

Query: 32  KKTVATLYDSPEGQ--IGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINK----TS 85
           K      YD  +       V  G  +H G + E   +D   + S +    + ++      
Sbjct: 5   KDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGV 64

Query: 86  ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG 145
           + +  + +D+G G+G +   L +  G  +D + I+  Q +   +     GL D +   +G
Sbjct: 65  LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG 124

Query: 146 DALNLPFDNDSFDGGWFFESIFH-MNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNK 204
             L +P +++S+D  W  ++  H  +      E  RVLK   ++ +TD P+     + + 
Sbjct: 125 SFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITD-PMKEDGIDKSS 183

Query: 205 FKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIY 264
            +  + +    +   +  Y  L  + G   ++       ++     K+    +    EI 
Sbjct: 184 IQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVHHY-SKVKAELIKRSSEIA 242

Query: 265 KSIP-----NPEKSIDNWLYLFKYMSKNLGYIIVTAKK 297
                    N ++ +++W+   +  +  L +  +  +K
Sbjct: 243 SFCSPEFQANMKRGLEHWIEGGR--AGKLTWGGMLFRK 278

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 76.6 bits (187), Expect = 4e-17
 Identities = 44/235 (18%), Positives = 82/235 (34%), Gaps = 15/235 (6%)

Query: 72  GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTA 131
           GSD L++ ++   ++   +  +D+  G G      A     +V    +++   + A    
Sbjct: 1   GSD-LAK-LMQIAALKGNEEVLDVATGGGHVANAFAP-FVKKVVAFDLTEDILKVARAFI 57

Query: 132 KAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLT 191
           +  G                 D           +    N ++ ++EA RVLK G  L L 
Sbjct: 58  EGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLV 117

Query: 192 DLPLLSVSKND--NKFKEYVKKNI---HSNFILVEHYPDLLNKSGFELIKIDDITSHVMP 246
           D    S  +ND  + F  YV+K     H        +  +L ++GFEL ++       + 
Sbjct: 118 D---NSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIF 174

Query: 247 LLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLF----KYMSKNLGYIIVTAKK 297
                    T   K+E+   I +          +     +  S     I++ A+K
Sbjct: 175 EDWCDRMNVTTEKKQELSDFIKSKPTEYYQKFKIVVEDGRVYSFRGESILMKARK 229

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 75.8 bits (185), Expect = 9e-17
 Identities = 30/164 (18%), Positives = 65/164 (39%), Gaps = 3/164 (1%)

Query: 73  SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAK 132
           +++    +     +  G R +D+G G G      A+  G    GI +S      A + A+
Sbjct: 18  TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAE 77

Query: 133 AEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSILTLT 191
             G+ ++V+F+H DA      N+  D      + +     + A     + LK G I+ + 
Sbjct: 78  ELGVSERVHFIHNDAAG-YVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIG 136

Query: 192 DLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI 235
           + P         +  +    +  S+F+ +       +  G++++
Sbjct: 137 E-PYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVV 179

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 2e-13
 Identities = 33/213 (15%), Positives = 64/213 (30%), Gaps = 13/213 (6%)

Query: 11  NKDIKDIKENKDIKENKGNKGKKTVATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFA 70
           N+ I  I +             +    L      Q+ +           + E  S + + 
Sbjct: 75  NRAIDSIHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNY-EPFSPEVYG 133

Query: 71  QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMK 129
           + S  L   MI++  +T    F+D+G G G   +++A A  C    G+  +    + A  
Sbjct: 134 ETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAET 193

Query: 130 TAKAEGLL--------DKVNFLHGDALNLPFDNDSFDGG-WFFESIFHMNH-SAALNEAR 179
             +              +     GD L+  +     +    F  +          L E  
Sbjct: 194 MDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERF 253

Query: 180 RVLKSGS-ILTLTDLPLLSVSKNDNKFKEYVKK 211
             +K G  I++      L+   N     +    
Sbjct: 254 ANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTI 286

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 64.5 bits (156), Expect = 4e-13
 Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 10/149 (6%)

Query: 67  DNFAQGSD-------KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI 119
           D F +          ++  +++      K    +D+GCG G   +     +  RV  I  
Sbjct: 5   DEFIKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLE-LAGRVRRVYAIDR 63

Query: 120 SKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEAR 179
           +     +     +  GL D V  + GDA          D      S   +     L   +
Sbjct: 64  NPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQE--ILRIIK 121

Query: 180 RVLKSGSILTLTDLPLLSVSKNDNKFKEY 208
             LK G  + +T + L +  +     ++ 
Sbjct: 122 DKLKPGGRIIVTAILLETKFEAMECLRDL 150

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.4 bits (153), Expect = 3e-12
 Identities = 29/235 (12%), Positives = 65/235 (27%), Gaps = 28/235 (11%)

Query: 59  YWDESNSK------DNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC 112
           Y D   ++       +    + +    ++         R +D+ CG G+  I L + +G 
Sbjct: 21  YADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVE-EGF 79

Query: 113 RVDGITISKFQQESAMKTAKAEGL--------LDKVNFLHGDALNLPFDNDSFDGGWFFE 164
            V  +  S    + A+K               +++ N+L  D  ++P  +          
Sbjct: 80  SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK-DVPAGDGFDAVICLGN 138

Query: 165 SIFHM--------NHSAALNEARRVLKSGSILTLTDLPLLSVSKND----NKFKEYVKKN 212
           S  H+         H  AL     +++ G +L +       +         K   Y    
Sbjct: 139 SFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDL 198

Query: 213 IHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSI 267
                  V    +  +    +                 K   +   +    +  +
Sbjct: 199 TKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTEL 253

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 62.7 bits (151), Expect = 3e-12
 Identities = 35/166 (21%), Positives = 56/166 (33%), Gaps = 5/166 (3%)

Query: 78  RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLL 137
            +MI         R +DIG G G + +  +        G+  +K   E    +   E  +
Sbjct: 6   GLMIKTAECRAEHRVLDIGAGAGHTALAFSP-YVQECIGVDATKEMVE-VASSFAQEKGV 63

Query: 138 DKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSILTLTDLPLL 196
           + V F  G A +LPF +DSFD      +  H  +   A+ E  RVLK      L D    
Sbjct: 64  ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP 123

Query: 197 SVSKNDNKFKEYVKKNI--HSNFILVEHYPDLLNKSGFELIKIDDI 240
                D       +     H     +  +  + + +      I   
Sbjct: 124 EDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKW 169

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 60.8 bits (147), Expect = 2e-11
 Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 7/111 (6%)

Query: 80  MINKTSITKGQRFIDIGCGFGLSGIRLAKAKG--CRVDGITISKFQQESAMKTAKAEGLL 137
           +I +  +  G   +++G G G     +  A      +  +   +   + AM        +
Sbjct: 77  IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI 136

Query: 138 DKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSIL 188
             V     D  +   D       +        +    + +   ++K GS+ 
Sbjct: 137 GNVRTSRSDIADFISDQM-----YDAVIADIPDPWNHVQKIASMMKPGSVA 182

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 59.2 bits (143), Expect = 7e-11
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 8/118 (6%)

Query: 75  KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC--RVDGITISKFQQESAMKTAK 132
           K +  ++++  I  G R ++ G G G   + L +A G   +V          E A +   
Sbjct: 83  KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 142

Query: 133 A--EGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSIL 188
                  D    +  D  +    + S D       +  +     L+   R+L +G +L
Sbjct: 143 GCYGQPPDNWRLVVSDLADSELPDGSVDRAV----LDMLAPWEVLDAVSRLLVAGGVL 196

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 2e-10
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 74  DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA 133
           +     +     I K +  +D+GCG G+  +  AKA   +V G+  S+     AM   + 
Sbjct: 21  ESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRL 79

Query: 134 EGLLDKVNFLHGDALNLPFDNDSFDG----GWFFESIFHMNHSAALNEARRVLKSGSIL 188
             L D +  + G    +    +  D        +  +F     + L    + L  G  +
Sbjct: 80  NKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSV 138

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.5 bits (141), Expect = 2e-10
 Identities = 19/155 (12%), Positives = 45/155 (29%), Gaps = 21/155 (13%)

Query: 59  YWDESNSKDNFAQGSD--------KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK 110
              ++N   ++   S+             +  +  + KG  F+D+G G G   ++ A   
Sbjct: 179 IHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALEC 238

Query: 111 GC-RVDGITISKFQQESAMKTAKAEGLLDKVN---------FLHGDALNLPFDNDSFDG- 159
           GC    G  I     +  +   +      K+           L    ++     +     
Sbjct: 239 GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQC 298

Query: 160 --GWFFESIFHMNHSAALNEARRVLKSGSILTLTD 192
                   +F  + +  + +  +  K G  +    
Sbjct: 299 DVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK 333

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 3e-10
 Identities = 31/129 (24%), Positives = 45/129 (34%), Gaps = 20/129 (15%)

Query: 75  KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC--RVDGITISKFQQESAMKTAK 132
           K   ++++   I  G   ++ G G G   + L+KA G   RV    + K   + A K  K
Sbjct: 85  KDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYK 144

Query: 133 ----------AEGLLDKVNFLHGDALNLPFDND--SFDGGWFFESIFHM-NHSAALNEAR 179
                      E   D V+F+H D      D    +FD          M N    L    
Sbjct: 145 HWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVA-----LDMLNPHVTLPVFY 199

Query: 180 RVLKSGSIL 188
             LK G + 
Sbjct: 200 PHLKHGGVC 208

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 55.5 bits (133), Expect = 1e-09
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 9/117 (7%)

Query: 75  KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISKFQQESAMKTAK 132
           K S  +     + +G R ID G G G     LA+A     +V      +   + A     
Sbjct: 90  KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLT 149

Query: 133 AEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARRVLKSGSIL 188
             GL+++V     D       ++ FD          + +    +++    LK G   
Sbjct: 150 KWGLIERVTIKVRDI------SEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRF 200

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.6 bits (133), Expect = 1e-09
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 5/119 (4%)

Query: 74  DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA 133
                 M +   + K +  +D+G G G+  +  AKA   +V GI  S    + A+K  KA
Sbjct: 19  LTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKA 77

Query: 134 EGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSA----ALNEARRVLKSGSIL 188
             L   V  + G    +    +  D        + + + +     L+   + L    ++
Sbjct: 78  NKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLI 136

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (133), Expect = 2e-09
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 74  DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA 133
                 +I    + K +  +D+GCG G+  +  AK     V G+ +S    E A +  + 
Sbjct: 24  LSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVEL 82

Query: 134 EGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSA----ALNEARRVLKSGSIL 188
            G  DK+  L G   ++       D        + + + +     L      L  G ++
Sbjct: 83  NGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLI 141

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 55.3 bits (132), Expect = 2e-09
 Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 4/141 (2%)

Query: 52  GGHMHW--GYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA 109
                +   Y++    +    +       + ++K  +  G   +DIGCG+G +  R  + 
Sbjct: 16  DPTRTYSCAYFE--PPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVER 73

Query: 110 KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM 169
               V G+T+SK Q     +   +         L     +     D       FE   H 
Sbjct: 74  FDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHFGHE 133

Query: 170 NHSAALNEARRVLKSGSILTL 190
           N+         ++ +   +T+
Sbjct: 134 NYDDFFKRCFNIMPADGRMTV 154

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 54.2 bits (129), Expect = 3e-09
 Identities = 29/182 (15%), Positives = 56/182 (30%), Gaps = 17/182 (9%)

Query: 80  MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK 139
            + +    +G   +D+GCG G   ++  +A      G+ I++     A   A+      K
Sbjct: 16  CLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFK 75

Query: 140 VNFLHGDALNLPFDNDSFDGGWFFESIFH------MNHSAALNEARRVLKSGSILTLTDL 193
           V F   D+     D          +  FH       +   A     R L+ G    +T  
Sbjct: 76  VFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT-- 133

Query: 194 PLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID----DITSHVMPLLV 249
                  + +   E  K+   SN         + +     + +      D  ++ +   V
Sbjct: 134 -----VPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFV 188

Query: 250 PK 251
             
Sbjct: 189 DF 190

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 53.3 bits (127), Expect = 8e-09
 Identities = 39/252 (15%), Positives = 81/252 (32%), Gaps = 25/252 (9%)

Query: 64  NSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA--KGCRVDGITISK 121
           N++D +    D +S ++     ITK    +D GCG+G  G+ L     +G +  GI   +
Sbjct: 4   NTRDLY-YNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGE 62

Query: 122 FQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM-NHSAALNEARR 180
                A +  +      +        + L   ND +D       + HM      L +   
Sbjct: 63  TLLAEARELFRLLPYDSEFLEGDATEIEL---NDKYDIAICHAFLLHMTTPETMLQKMIH 119

Query: 181 VLKSGSILTLTDL----PLLSVSKNDNKFKEYVKKNIHSNFI------------LVEHYP 224
            +K G  +   +      + S   +  K  E+++  +                 +    P
Sbjct: 120 SVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIP 179

Query: 225 DLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYM 284
             L++ G + I+                 +    Y+    + I         ++     +
Sbjct: 180 IYLSELGVKNIECRVSDKVNFLDSNMHHNDKNDLYQSLKEEGIAGDPGDKQQFVERL--I 237

Query: 285 SKNLGYIIVTAK 296
           ++ L Y    A+
Sbjct: 238 ARGLTYDNALAQ 249

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 285

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 52.9 bits (126), Expect = 1e-08
 Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 4/141 (2%)

Query: 52  GGHMHW--GYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA 109
                +   Y++  +      +       + + K  +  G   +D+GCG+G + +R  + 
Sbjct: 26  DPTQTYSCAYFERDD--MTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEK 83

Query: 110 KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM 169
               V G+T+SK Q     +       L     L           D       FE   H 
Sbjct: 84  YDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEHFGHE 143

Query: 170 NHSAALNEARRVLKSGSILTL 190
            + A  + A R+L +  ++ L
Sbjct: 144 RYDAFFSLAHRLLPADGVMLL 164

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 1e-08
 Identities = 25/201 (12%), Positives = 43/201 (21%), Gaps = 45/201 (22%)

Query: 81  INKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKV 140
                  +G   IDIG G  +  +  A      +     +   +E   K  K E      
Sbjct: 44  TFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDW 103

Query: 141 NF---------------------------------LHGDALNLPFDNDSFDGGWFFESIF 167
                                              +H      P      D      ++ 
Sbjct: 104 TPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAME 163

Query: 168 HMNH-----SAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEH 222
                     AAL     +LK G  L  T                  K+      +    
Sbjct: 164 CACCSLDAYRAALCNLASLLKPGGHLVTTVT-------LRLPSYMVGKREFSCVALEKGE 216

Query: 223 YPDLLNKSGFELIKIDDITSH 243
               +  +GF++ ++      
Sbjct: 217 VEQAVLDAGFDIEQLLHSPQS 237

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.9 bits (121), Expect = 3e-08
 Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 6/140 (4%)

Query: 86  ITKGQRFIDIGCGFGLSGIRLAKAKGC--RVDGITISKFQQESAMKTAKAEGLLDKVNFL 143
           I  G+  + +G   G +   ++   G   ++ GI  S       +   +    +  +   
Sbjct: 71  IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGD 130

Query: 144 HGDALNLPFDNDSFDGGWFFESIFHMN-HSAALNEARRVLKSGSILTL-TDLPLLSVSKN 201
                         D    FE +         ++ A   LK G    +      + V+K 
Sbjct: 131 ATKPEEYRALVPKVD--VIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKE 188

Query: 202 DNKFKEYVKKNIHSNFILVE 221
             +    V++ +   F ++E
Sbjct: 189 PEQVFREVERELSEYFEVIE 208

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

 Score = 50.4 bits (119), Expect = 6e-08
 Identities = 32/229 (13%), Positives = 61/229 (26%), Gaps = 29/229 (12%)

Query: 26  NKGNKGKKTVATLYDSPEGQIGSVLFGGHMHW-----GYWDESNSKDN-----FAQGSD- 74
           +   K  ++   ++ +   ++   L+     W      YW    +  +          D 
Sbjct: 21  DTNGKTYRSTDEMWKA---ELTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDV 77

Query: 75  --KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAK 132
             + SR  I         R +D G G G     L        D +   K   E A +   
Sbjct: 78  DIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA 137

Query: 133 AEGLLDKVNFLHGDALNLPFDNDSFDGGW---FFESIFHMNHSAALNEARRVLKSGSILT 189
                    F+           +++D          +   +        ++ L     + 
Sbjct: 138 GM---PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIF 194

Query: 190 LTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID 238
             +             +  V K   S      HY  L N+SG  ++K  
Sbjct: 195 FKE-------NCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA 236

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 50.4 bits (119), Expect = 7e-08
 Identities = 32/208 (15%), Positives = 59/208 (28%), Gaps = 13/208 (6%)

Query: 51  FGGHMHWGYWDES-NSKDNFAQG----SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIR 105
           +G    W          D+F        D       +    +  +  +D+G G G     
Sbjct: 40  YGRPF-WEDLSADVALADSFDALMSCDEDLAYEAPADAYDWSAVRHVLDVGGGNGGMLAA 98

Query: 106 LAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD-NDSFDGGWFF 163
           +A      R   + ++   + +  +     GL D+V    GD         D     +  
Sbjct: 99  IALRAPHLRGTLVELAGPAERARRR-FADAGLADRVTVAEGDFFKPLPVTADVVLLSFVL 157

Query: 164 ESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNF----IL 219
            +    +    L    R L+ G  L + D   +     D  F   +   + +        
Sbjct: 158 LNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRT 217

Query: 220 VEHYPDLLNKSGFELIKIDDITSHVMPL 247
            +   DL   +G  L       S  +P 
Sbjct: 218 RDEVVDLAGSAGLALASERTSGSTTLPF 245

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 6e-07
 Identities = 24/199 (12%), Positives = 60/199 (30%), Gaps = 18/199 (9%)

Query: 59  YWDESNSKDNFAQGSDK-LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK------- 110
           + + S       +  DK L  I+          + + IG G G   +++           
Sbjct: 10  FLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGV 69

Query: 111 GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG--------DALNLPFDNDSFDGGWF 162
               + +  S  Q     +       L+ V F             +    +   +D    
Sbjct: 70  CINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHM 129

Query: 163 FESIFHM-NHSAALNEARRVLKSGSILTLTDL-PLLSVSKNDNKFKEYVKKNIHSNFILV 220
            + ++++ +  A L     +L + + + +  +       K   K+     ++    +I  
Sbjct: 130 IQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITS 189

Query: 221 EHYPDLLNKSGFELIKIDD 239
           +    +L+  G +    D 
Sbjct: 190 DDLTQMLDNLGLKYECYDL 208

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 18/141 (12%), Positives = 41/141 (29%), Gaps = 7/141 (4%)

Query: 86  ITKGQRFIDIGCGFGLSGIRLAK-AKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
           +   +R + +G   G +   LA       +  +  S    E  ++  +       +  L 
Sbjct: 54  LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLL 110

Query: 145 GDALNLPFDNDSFDGGWFFESIFHM--NHSAALNEARRVLKSGSILTLTD-LPLLSVSKN 201
            DA      +   +                     A   LK    + +      +  +  
Sbjct: 111 FDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAE 170

Query: 202 DNKFKEYVKKNIHSNFILVEH 222
             +  + V K +  +F +V+H
Sbjct: 171 PEEVFKSVLKEMEGDFKIVKH 191

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 23/160 (14%), Positives = 46/160 (28%), Gaps = 17/160 (10%)

Query: 86  ITKGQRFIDIGCGFGLSGIRLAK-AKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLH 144
           I +  + + +G   G +   +A  A    V  I  +       +         + +  L 
Sbjct: 72  IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLD--ACAERENIIPILG 129

Query: 145 GDALNLPFDNDSFDGGWFFESIFHMNH-SAALNEARRVLKSGSILTLTDLPLLSVSKNDN 203
                  + N        +E +   N     +  A+  LK G    +             
Sbjct: 130 DANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA----------IK 179

Query: 204 KFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSH 243
                V K+    F   +   ++L   GF+++   DI   
Sbjct: 180 ARSIDVTKDPKEIFKEQK---EILEAGGFKIVDEVDIEPF 216

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 14/125 (11%), Positives = 30/125 (24%), Gaps = 16/125 (12%)

Query: 81  INKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKV 140
            +  ++  G R +   CG       L+  +G  V G  +S+   E        +  +   
Sbjct: 13  WSSLNVVPGARVLVPLCGKSQDMSWLSG-QGYHVVGAELSEAAVERYFTERGEQPHITSQ 71

Query: 141 -----------NFLHGDALNLPFDNDSFDGG----WFFESIFHMNHSAALNEARRVLKSG 185
                          GD   L   +              ++        +     ++   
Sbjct: 72  GDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA 131

Query: 186 SILTL 190
               L
Sbjct: 132 CSGLL 136

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 45.1 bits (105), Expect = 4e-06
 Identities = 26/180 (14%), Positives = 58/180 (32%), Gaps = 5/180 (2%)

Query: 59  YWDE--SNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDG 116
           Y+D       +      D +  I   + +  + +R +D+ CG G+  + LA+ +G  V G
Sbjct: 11  YYDTIYRRRIERVKAEIDFVEEI-FKEDAKREVRRVLDLACGTGIPTLELAE-RGYEVVG 68

Query: 117 ITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFH-MNHSAAL 175
           + + +     A + AK   L  +        +    + D+    +     F   +     
Sbjct: 69  LDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLF 128

Query: 176 NEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI 235
           ++    LK G +            ++        K       +        + K  F+ +
Sbjct: 129 SKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRL 188

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 18/124 (14%), Positives = 39/124 (31%), Gaps = 7/124 (5%)

Query: 52  GGHMHW--GYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA 109
              M +   Y++  +      +      ++ ++K ++  G   +DIGCG+G +       
Sbjct: 25  DPSMTYSCAYFERPD--MTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAE 82

Query: 110 KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHM 169
               V G+T+S+ Q               +              ++  D      +  H 
Sbjct: 83  YDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI---QGWEEFDEPVDRIVSLGAFEHF 139

Query: 170 NHSA 173
              A
Sbjct: 140 ADGA 143

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 29/237 (12%), Positives = 64/237 (27%), Gaps = 30/237 (12%)

Query: 74  DKLSRIMINK-TSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAK 132
           D +   M+   T   +    +++G   G    RL +     +  +  S+     A     
Sbjct: 5   DVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQE-HFNDITCVEASEEAISHAQGRL- 62

Query: 133 AEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAAL--NEARRVLKSGSILTL 190
                                   +D       + H++   AL        L  G  L L
Sbjct: 63  -----KDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFL 117

Query: 191 TDLPLLSVS----------KNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDI 240
                 +VS           +++   E    + H     ++      +++G ++     I
Sbjct: 118 VCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGI 177

Query: 241 TSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYMSKNLGYIIVTAKK 297
                 L              +I ++    ++ +D    L +        I +  +K
Sbjct: 178 --FFKAL--------ANFQWDQILQTDILSKEYLDGCYQLGQQYPDLCASIFLLCEK 224

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 17/133 (12%), Positives = 37/133 (27%), Gaps = 2/133 (1%)

Query: 60  WDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITI 119
            DE+   + +  G  +    ++    +    R +D+GCG G + + LA            
Sbjct: 4   RDENYFTEKY--GLTRTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKN 61

Query: 120 SKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEAR 179
                      A       + + +  + L    + D          +        +   +
Sbjct: 62  PASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQ 121

Query: 180 RVLKSGSILTLTD 192
           R  K G    +  
Sbjct: 122 RCTKPGGYNLIVA 134

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 41.9 bits (97), Expect = 4e-05
 Identities = 32/155 (20%), Positives = 49/155 (31%), Gaps = 23/155 (14%)

Query: 88  KGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD 146
           K    +DIGCG G      A A       G+ +SK   ++A K         +V F    
Sbjct: 84  KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVAS 137

Query: 147 ALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFK 206
           +  LPF + S D      +           E  RV+K G  +          +       
Sbjct: 138 SHRLPFSDTSMDAIIRIYAPCK------AEELARVVKPGGWVIT-------ATPGPRHLM 184

Query: 207 EYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDIT 241
           E      +    +  H P      GF L +  ++ 
Sbjct: 185 ELKGLIYNE---VHLHAPHAEQLEGFTLQQSAELC 216

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 7e-05
 Identities = 22/229 (9%), Positives = 57/229 (24%), Gaps = 54/229 (23%)

Query: 57  WGYWDE--SNSKDNFAQGSDKLSRIM-----INKTSITKGQRFIDIGCGFGLSGIRLAKA 109
             Y     +  + +    +      +        T    G+  IDIG G  +  +  A +
Sbjct: 16  RAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACS 75

Query: 110 KGCRVDGITISKFQQESAMKTAKAE-GLLDKVNFLH------------------------ 144
               +      +  ++   +  + E G  +   +                          
Sbjct: 76  HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVK 135

Query: 145 ----------GDALNLPFDNDSFDGGWFFESIFHMNHS-----AALNEARRVLKSGSILT 189
                                  D       +  ++        AL+    +L+ G    
Sbjct: 136 RVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGH-- 193

Query: 190 LTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID 238
                LL +   +  +    +  +    +  E   + L +SG+++  + 
Sbjct: 194 -----LLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLR 237

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 7e-05
 Identities = 21/159 (13%), Positives = 36/159 (22%), Gaps = 25/159 (15%)

Query: 59  YWDESNSKDNFA----QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRV 114
            W +       A    QG   L + +        G R     CG  +     A  +G  V
Sbjct: 12  EWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFAD-RGHSV 70

Query: 115 DGITISKFQQESAMKTAKAEGL----------------LDKVNFLHGDALNLPFDNDSFD 158
            G+ IS+   +                              ++       +LP  N    
Sbjct: 71  VGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKF 130

Query: 159 GGWFFESIFH----MNHSAALNEARRVLKSGSILTLTDL 193
              +           +     +    +L       L  L
Sbjct: 131 DMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 23/170 (13%), Positives = 45/170 (26%), Gaps = 13/170 (7%)

Query: 59  YWDESNSKD-NFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGI 117
            +D+    D ++ + SD +    +          ++D+ CG G     L   K      +
Sbjct: 9   IYDKLIRADVDYKKWSDFIIEKCVENNL--VFDDYLDLACGTGNLTENLCP-KFKNTWAV 65

Query: 118 TISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH----SA 173
            +S+     A    +++G   K      D  NL  +          +S  ++        
Sbjct: 66  DLSQEMLSEAENKFRSQG--LKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKK 123

Query: 174 ALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY 223
                   LK G +       + S  K                       
Sbjct: 124 YFKAVSNHLKEGGVFIFD---INSYYKLSQVLGNNDFNYDDDEVFYYWEN 170

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 18/103 (17%), Positives = 28/103 (27%), Gaps = 6/103 (5%)

Query: 87  TKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG 145
           +  +R IDIG G       L     G       +       A K  +   L D +  +  
Sbjct: 60  STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKV 119

Query: 146 DALNLPFDNDSFDGGWFFESI-----FHMNHSAALNEARRVLK 183
               L  D    +    ++       F  N   A     R  +
Sbjct: 120 PQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPR 162

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 194

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 14/165 (8%)

Query: 74  DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA 133
           DK ++I++    + K    +D+GCG+G+ GI LA             +  + +       
Sbjct: 38  DKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLN 97

Query: 134 EGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFH--MNHSAALNEARRVLKSGSILTLT 191
                 +  +H D       +  ++       I          + E + +LK    +   
Sbjct: 98  NLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEI--- 153

Query: 192 DLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIK 236
               + +        + + K +   F  VE    +  K G+ ++K
Sbjct: 154 ---WVVIQTKQG--AKSLAKYMKDVFGNVE---TVTIKGGYRVLK 190

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 23/238 (9%)

Query: 59  YWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGIT 118
            +D       +      +   +  +  +    R +D+G G      + +     R   + 
Sbjct: 15  AYDSMYETPKWKLYHRLIGSFL--EEYLKNPCRVLDLGGGT----GKWSLFLQERGFEVV 68

Query: 119 ISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEA 178
           +    +E      +                           G      +  N   A +E 
Sbjct: 69  LVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLS--YVENKDKAFSEI 126

Query: 179 RRVLKSGSILTLTDLPLLSVSKND---------NKFKEYVKKNIHSNFILVEHYP----D 225
           RRVL    +L  T     +  +            +F +    ++ +       Y     D
Sbjct: 127 RRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPED 186

Query: 226 LLNKSGFELIKIDDIT-SHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFK 282
           L +  GFE + I  I         + +  E     ++E+ +      K+ D+  ++ K
Sbjct: 187 LDSLEGFETVDIRGIGVMEYPDERISEREETIFRLEQELSRDRNIIWKA-DHIFFVLK 243

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 6/64 (9%)

Query: 88  KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA 147
            G+  ID G G G+            V    I     E+A +          VNF+  D 
Sbjct: 48  GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADV 101

Query: 148 LNLP 151
             + 
Sbjct: 102 SEIS 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	298
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	100.0
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	100.0
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	100.0
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	100.0
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.97
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.97
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.95
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.93
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.92
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.91
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.91
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.9
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.9
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.88
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.88
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.88
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.88
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.87
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.87
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.87
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.86
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.83
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.82
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.82
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.82
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.81
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.81
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.79
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.79
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.79
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.79
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.78
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.78
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.77
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.77
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.77
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.75
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.71
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.7
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.7
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.7
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.69
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.68
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.67
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.67
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.65
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.65
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.62
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.62
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.61
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.61
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.6
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.59
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.59
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.57
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.54
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.45
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.44
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.42
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.4
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.39
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.38
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.35
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.33
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.31
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.31
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.3
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.24
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.23
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.22
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.22
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.2
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.14
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	99.11
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	99.01
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.97
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.97
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.94
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.91
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.87
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.85
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.85
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.83
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.83
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.79
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.78
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.75
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.72
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.72
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.71
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.68
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.56
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.56
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.54
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.53
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.42
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.33
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	98.32
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.32
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.29
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	98.07
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.04
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	98.03
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	98.02
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.99
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.95
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.9
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.87
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.87
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.86
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.84
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	97.81
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.74
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.74
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.69
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.64
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.6
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.41
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	97.34
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.27
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.19
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.16
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.15
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.09
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	97.0
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.96
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.79
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.75
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.75
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.69
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.62
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	96.56
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.52
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	96.28
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	95.98
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.98
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	95.72
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.46
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.11
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.68
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	94.66
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.63
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	94.44
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.23
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	93.16
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	93.06
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	92.53
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	92.06
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	90.57
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	90.14
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	90.12
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	89.72
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	89.53
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	89.41
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	88.99
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	88.94
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	88.91
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	88.8
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	88.79
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	88.46
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	87.98
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	87.56
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	87.54
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	87.35
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	87.07
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	87.07
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	87.01
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	86.92
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	86.91
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	85.82
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	85.81
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	85.8
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	85.51
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	85.29
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	84.51
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	84.05
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	83.8
d1vkra_	97	PTS system mannitol-specific EIICBA component {Esc	83.73
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	83.58
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.49
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	83.49
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	82.77
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	82.5
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	81.84
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	81.45
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	81.32
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	80.69
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	80.3
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	80.06

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.4e-38  Score=262.08  Aligned_cols=261  Identities=15%  Similarity=0.214  Sum_probs=223.0

Q ss_pred             CCCchhhHHhhhcCCcccccccccCCceeE--eeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Q psy2408          28 GNKGKKTVATLYDSPEGQIGSVLFGGHMHW--GYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIR  105 (298)
Q Consensus        28 ~~~~~~~~~~~yd~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~  105 (298)
                      .+...++|+.|||.. ++||..++|..+++  +||.+  +...+.+++.+..+.+++++++.||.+|||||||.|..+.+
T Consensus         3 ~~~~~~~i~~HYD~~-~~fy~~~Lg~~~~YS~g~~~~--~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~   79 (285)
T d1kpga_           3 LKPHFANVQAHYDLS-DDFFRLFLDPTQTYSCAYFER--DDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMR   79 (285)
T ss_dssp             SCCCHHHHHHHHTSC-HHHHTTTSCTTCCCSCCCCSS--TTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHH
T ss_pred             CCccHHHHHHhcCCc-HHHHHHhCCCCCcEeeEEeCC--CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHH
Confidence            456778999999999 99999999999886  89987  56789999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhcc
Q psy2408         106 LAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVL  182 (298)
Q Consensus       106 l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~L  182 (298)
                      +++..|++|+|+++|+.+++.|++++...++.+++.+...|...++   ++||.|++.++++|+...   .+++++.++|
T Consensus        80 ~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~L  156 (285)
T d1kpga_          80 AVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLL  156 (285)
T ss_dssp             HHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHS
T ss_pred             HHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhc
Confidence            9998899999999999999999999999999999999999998764   689999999999999644   9999999999


Q ss_pred             cCCcEEEEEeCCCCCC-------CCChhHHH---HHHHh--hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccchHH
Q psy2408         183 KSGSILTLTDLPLLSV-------SKNDNKFK---EYVKK--NIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVP  250 (298)
Q Consensus       183 kpgG~l~i~~~~~~~~-------~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~  250 (298)
                      +|||++++.++....+       .+......   .+...  ++...+.+.+++..+++++||.+++..+++.++.. +++
T Consensus       157 kpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e~agf~v~~~~~~~~hYar-Tl~  235 (285)
T d1kpga_         157 PADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAK-TLD  235 (285)
T ss_dssp             CTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEECHHHHHH-HHH
T ss_pred             CCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHHHHHHhchhhcccccchhhHHH-HHH
Confidence            9999999987753221       11011111   11111  23345678899999999999999999999999988 999


Q ss_pred             HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhcc-----ccccEEEEEEEe
Q psy2408         251 KLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYMS-----KNLGYIIVTAKK  297 (298)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~a~k  297 (298)
                      .|.+++...++++.+.++  +++.++|..++..|+     +.++...++++|
T Consensus       236 ~W~~~f~~~~~ei~~~~~--~~~~rrw~~Yl~~c~~~F~~g~~~v~q~~~~k  285 (285)
T d1kpga_         236 LWSAALQANKGQAIALQS--EEVYERYMKYLTGCAEMFRIGYIDVNQFTCQK  285 (285)
T ss_dssp             HHHHHHHHTHHHHHHHSC--HHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence            999999999999999987  677788998888884     456788888876

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=100.00  E-value=1.2e-38  Score=267.28  Aligned_cols=265  Identities=16%  Similarity=0.250  Sum_probs=208.6

Q ss_pred             hhhHHhhhcCCc-cccccccc-CCceeEeeccCCCCCCcHHHHHHHH----HHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Q psy2408          32 KKTVATLYDSPE-GQIGSVLF-GGHMHWGYWDESNSKDNFAQGSDKL----SRIMINKTSITKGQRFIDIGCGFGLSGIR  105 (298)
Q Consensus        32 ~~~~~~~yd~~~-~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~vLDiGcG~G~~~~~  105 (298)
                      .++++.|||..+ ..||...+ |+.+|+|||....+...+.++..+.    ...+.....++++.+|||||||+|..+..
T Consensus         5 ~~~~~~~y~~~~~~~fy~~~w~g~~~h~G~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~   84 (282)
T d2o57a1           5 KDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARF   84 (282)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHTTSCCCSCCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHH
T ss_pred             HHHHHHhcCCchhHHHHHHHcCCCCceeeecCCCCCCcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhh
Confidence            456889999842 67887766 5688999998765566666665544    44455556788999999999999999999


Q ss_pred             HHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccC
Q psy2408         106 LAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKS  184 (298)
Q Consensus       106 l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~Lkp  184 (298)
                      +++.++++|+|+|+|+.|++.|+++....++.++++++++|+.++|+++++||+|++..+++|++++ .+++++.++|||
T Consensus        85 la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lkp  164 (282)
T d2o57a1          85 LVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKP  164 (282)
T ss_dssp             HHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEE
T ss_pred             hhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchhhhccCHHHHHHHHHHhcCC
Confidence            9987789999999999999999999999999889999999999999999999999999999999999 999999999999


Q ss_pred             CcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccchHHHHHHHHHHHHHHHH
Q psy2408         185 GSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLTYKKEIY  264 (298)
Q Consensus       185 gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (298)
                      ||++++.++....... ......+........+.+.+++.++++++||..+...+.+..+.. ++..+...+......+.
T Consensus       165 gG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~  242 (282)
T d2o57a1         165 RGVMAITDPMKEDGID-KSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVH-HYSKVKAELIKRSSEIA  242 (282)
T ss_dssp             EEEEEEEEEEECTTCC-GGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEECHHHHHH-HHHHHHHHHHHTHHHHT
T ss_pred             CcEEEEEEeecCCCCc-hhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEEECcHhHHH-HHHHHHHHHHHHHHHHH
Confidence            9999999876655443 233344444444556678899999999999999998887766655 66666666666666555


Q ss_pred             hhCCC--hHHHHHHHHHHHhh-ccccccEEEEEEEeC
Q psy2408         265 KSIPN--PEKSIDNWLYLFKY-MSKNLGYIIVTAKKI  298 (298)
Q Consensus       265 ~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~a~k~  298 (298)
                      .....  .+.+...|...... ..+.++|++++||||
T Consensus       243 ~~~~~e~~~~~~~~~~~~~~~~~~g~~~~g~~varK~  279 (282)
T d2o57a1         243 SFCSPEFQANMKRGLEHWIEGGRAGKLTWGGMLFRKS  279 (282)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEES
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHhCCeeEEEEEEEEcC
Confidence            55442  22222334333222 266799999999997

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=9.7e-38  Score=260.08  Aligned_cols=261  Identities=12%  Similarity=0.156  Sum_probs=222.1

Q ss_pred             CCCchhhHHhhhcCCcccccccccCCceeE--eeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Q psy2408          28 GNKGKKTVATLYDSPEGQIGSVLFGGHMHW--GYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIR  105 (298)
Q Consensus        28 ~~~~~~~~~~~yd~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~  105 (298)
                      .+...++|++|||.. ++||..++|..+++  +||.+  +...+.+++.+..+.+++.+++++|.+|||||||.|.++.+
T Consensus         2 ~~~~~~~i~~HYD~~-~~fy~~~Lg~~~~YS~~~~~~--~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~   78 (291)
T d1kpia_           2 LKPPVEAVRSHYDKS-NEFFKLWLDPSMTYSCAYFER--PDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRH   78 (291)
T ss_dssp             CCCCHHHHHHHHTSC-HHHHHHHSCTTCCCSCCCCSS--TTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHH
T ss_pred             CCCcHhHHHHhcCCC-HHHHHHhcCCCCCeeeEEecC--CCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHH
Confidence            345678999999999 99999999998876  89987  56789999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccCh---------H-HHH
Q psy2408         106 LAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNH---------S-AAL  175 (298)
Q Consensus       106 l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~---------~-~~l  175 (298)
                      +++..|++|+|+++|+++++.+++++...++..++.+...|...   ++++||.|++.++++|+++         . .++
T Consensus        79 ~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~---~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f  155 (291)
T d1kpia_          79 AVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE---FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFF  155 (291)
T ss_dssp             HHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG---CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHH
T ss_pred             HHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc---cccccceEeechhHHhcchhhhhhHHHHHHHHH
Confidence            99888999999999999999999999999999889998888743   4689999999999999975         3 899


Q ss_pred             HHHhhcccCCcEEEEEeCCCCCCCC-------ChhHH---HHHHHh--hcccCCCCcchHHHHHHhCCCcEEEEEeCCCC
Q psy2408         176 NEARRVLKSGSILTLTDLPLLSVSK-------NDNKF---KEYVKK--NIHSNFILVEHYPDLLNKSGFELIKIDDITSH  243 (298)
Q Consensus       176 ~~~~r~LkpgG~l~i~~~~~~~~~~-------~~~~~---~~~~~~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  243 (298)
                      +++.++|||||++++.++.......       .+...   ..+...  ++...+.+.+++...++++||++++.++++.+
T Consensus       156 ~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~~~~~~~~e~~gl~v~~~~~~~~h  235 (291)
T d1kpia_         156 KKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGAN  235 (291)
T ss_dssp             HHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEECGGG
T ss_pred             HHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCCCHHHHHhhhcccccccceeeecccc
Confidence            9999999999999998876543211       00011   111111  23346678899999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhccc-----cccEEEEEEEe
Q psy2408         244 VMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYMSK-----NLGYIIVTAKK  297 (298)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~a~k  297 (298)
                      +.. +++.|.+++...++++.+.++  +++.+.|..++.+|++     .++...+++.|
T Consensus       236 Ya~-TL~~W~~~f~~~~~ei~~l~g--~~~~r~W~~yl~~ce~~F~~~~~~v~q~~l~K  291 (291)
T d1kpia_         236 YVP-TLNAWADALQAHKDEAIALKG--QETCDIYMHYLRGCSDLFRDKYTDVCQFTLVK  291 (291)
T ss_dssp             HHH-HHHHHHHHHHHTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSSEEEEEEEEC
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence            998 999999999999999999876  6788999999988854     45677787776

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.2e-38  Score=261.77  Aligned_cols=254  Identities=14%  Similarity=0.195  Sum_probs=215.6

Q ss_pred             HhhhcCCcccccccccCCceeE--eeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCe
Q psy2408          36 ATLYDSPEGQIGSVLFGGHMHW--GYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCR  113 (298)
Q Consensus        36 ~~~yd~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~  113 (298)
                      +.|||.. ++||..++|..+++  +||.+  +...+.+++.+..+.+++.+.++||.+|||||||+|.++..+++..|++
T Consensus         1 qaHYD~~-~~fy~~~ld~~m~YS~~~~~~--~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~   77 (280)
T d2fk8a1           1 QAHYDVS-DDFFALFQDPTRTYSCAYFEP--PELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVN   77 (280)
T ss_dssp             GGGGCCC-HHHHTTTSCTTCCCSCCCCSS--TTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCE
T ss_pred             CCCccCc-HHHHHHhCCCCCcEeeEEeCC--CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCcee
Confidence            4799999 99999999999987  79987  5678999999999999999999999999999999999999999878999


Q ss_pred             EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEE
Q psy2408         114 VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTL  190 (298)
Q Consensus       114 v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i  190 (298)
                      |+|+|+|+++++.|++++.+.++..++.+...|..+++   ++||.|++..+++|++.+   .+++++.++|||||++++
T Consensus        78 v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i  154 (280)
T d2fk8a1          78 VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV  154 (280)
T ss_dssp             EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             EEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc---cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEE
Confidence            99999999999999999999999888999988887653   789999999999999765   899999999999999999


Q ss_pred             EeCCCCCCCC----Chh-H-----HHHHHHh--hcccCCCCcchHHHHHHhCCCcEEEEEeCCCCcccchHHHHHHHHHH
Q psy2408         191 TDLPLLSVSK----NDN-K-----FKEYVKK--NIHSNFILVEHYPDLLNKSGFELIKIDDITSHVMPLLVPKLTEATLT  258 (298)
Q Consensus       191 ~~~~~~~~~~----~~~-~-----~~~~~~~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (298)
                      .+.....+..    ... .     ...+...  .+...+.+.+++...++++||++++.++++.++.. +++.|.+++..
T Consensus       155 ~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~l~~~~e~aGf~v~~~~~~~~hYa~-TL~~W~~~f~~  233 (280)
T d2fk8a1         155 QSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIK-TLRIWGDTLQS  233 (280)
T ss_dssp             EEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCEECHHHHHH-HHHHHHHHHHH
T ss_pred             EEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHhhhhhHHhhccccceeeecccCHHH-HHHHHHHHHHH
Confidence            8754332111    000 0     0011111  22334678899999999999999999999999988 99999999999


Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHhhc-----cccccEEEEEEEeC
Q psy2408         259 YKKEIYKSIPNPEKSIDNWLYLFKYM-----SKNLGYIIVTAKKI  298 (298)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~k~  298 (298)
                      .++++....+  +++.+.|+.++..|     .+.++.+.+++.||
T Consensus       234 ~~~~i~~~~~--~~~~r~w~~yl~~c~~~F~~~~~~~~q~~~~kp  276 (280)
T d2fk8a1         234 NKDKAIEVTS--EEVYNRYMKYLRGCEHYFTDEMLDCSLVTYLKP  276 (280)
T ss_dssp             THHHHHHHSC--HHHHHHHHHHHHHHHHHHHTTSCEEEEEEEECT
T ss_pred             HHHHHHHhcC--HHHHHHHHHHHHHHHHHHhCCCccEEEEEEEcC
Confidence            9999999876  57777899888877     44679999999998

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.97  E-value=1.4e-30  Score=211.67  Aligned_cols=161  Identities=21%  Similarity=0.292  Sum_probs=133.1

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS  156 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  156 (298)
                      ...+++.++++++.+|||||||+|.++..+++ .+++|+|+|+|+.|++.|++++...+. ++++++++|+.++|+++++
T Consensus         4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~~~~~~   81 (231)
T d1vl5a_           4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAP-FVKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDER   81 (231)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTC
T ss_pred             HHHHHHhcCCCCcCEEEEecccCcHHHHHHHH-hCCEEEEEECCHHHHhhhhhccccccc-ccccccccccccccccccc
Confidence            45678888999999999999999999999988 578999999999999999999988876 4799999999999999999


Q ss_pred             eeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHH---HhhcccCCCCcchHHHHHHhCCC
Q psy2408         157 FDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYV---KKNIHSNFILVEHYPDLLNKSGF  232 (298)
Q Consensus       157 fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~Gf  232 (298)
                      ||+|++..+++|++++ .+++++.++|||||++++.++....... ........   ....+..+++.+++.++|+++||
T Consensus        82 fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  160 (231)
T d1vl5a_          82 FHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDA-FDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGF  160 (231)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHH-HHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTC
T ss_pred             cccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHH-HHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCC
Confidence            9999999999999999 9999999999999999998876443211 11111111   11234456788999999999999


Q ss_pred             cEEEEEeC
Q psy2408         233 ELIKIDDI  240 (298)
Q Consensus       233 ~~~~~~~~  240 (298)
                      .+++...+
T Consensus       161 ~~~~~~~~  168 (231)
T d1vl5a_         161 ELEELHCF  168 (231)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            98877654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.1e-29  Score=208.18  Aligned_cols=169  Identities=17%  Similarity=0.262  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      .....+.+.+.+++.|+.+|||||||+|..+..+++..+++|+|+|+|+.|++.|++++...++.++++++++|+.++. 
T Consensus        18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~-   96 (245)
T d1nkva_          18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-   96 (245)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-
T ss_pred             CHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc-
Confidence            3556778899999999999999999999999999987789999999999999999999999999889999999999974 


Q ss_pred             CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCC
Q psy2408         153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG  231 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  231 (298)
                      ++++||+|++..+++|++++ .++++++++|||||++++.++....... ...............+.+..++...++++|
T Consensus        97 ~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG  175 (245)
T d1nkva_          97 ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPA-TEEIAQACGVSSTSDFLTLPGLVGAFDDLG  175 (245)
T ss_dssp             CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCS-SHHHHHTTTCSCGGGSCCHHHHHHHHHTTT
T ss_pred             ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCC-hHHHHHHhccCCCcccCCHHHHHHHHHHcC
Confidence            57899999999999999999 9999999999999999999876554333 222222222223344678888999999999


Q ss_pred             CcEEEEEeCCCC
Q psy2408         232 FELIKIDDITSH  243 (298)
Q Consensus       232 f~~~~~~~~~~~  243 (298)
                      |+++.....+..
T Consensus       176 ~~~v~~~~~~~~  187 (245)
T d1nkva_         176 YDVVEMVLADQE  187 (245)
T ss_dssp             BCCCEEEECCHH
T ss_pred             CEEEEEEeCCHH
Confidence            998877665433

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=1.2e-27  Score=194.59  Aligned_cols=164  Identities=23%  Similarity=0.276  Sum_probs=134.9

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND  155 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  155 (298)
                      ....+++.++++|+.+|||||||+|.++..+++ .+.+|+|+|+|+.|++.|++++...++ +++.++++|+.++|++++
T Consensus         4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~-~~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~   81 (234)
T d1xxla_           4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSP-YVQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDD   81 (234)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCSCTT
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHH-hCCeEEEEeCChhhhhhhhhhhccccc-cccccccccccccccccc
Confidence            456688899999999999999999999999998 467999999999999999999998887 469999999999999999


Q ss_pred             CeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHH--HhhcccCCCCcchHHHHHHhCCC
Q psy2408         156 SFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYV--KKNIHSNFILVEHYPDLLNKSGF  232 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~Gf  232 (298)
                      +||+|++..+++|++++ .+++++.|+|||||++++.+............+..+.  ....+....+..++..+++++||
T Consensus        82 ~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf  161 (234)
T d1xxla_          82 SFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQL  161 (234)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTE
T ss_pred             ccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCC
Confidence            99999999999999999 9999999999999999998766433211011111111  12234456678889999999999


Q ss_pred             cEEEEEeCC
Q psy2408         233 ELIKIDDIT  241 (298)
Q Consensus       233 ~~~~~~~~~  241 (298)
                      .+.+...+.
T Consensus       162 ~~~~~~~~~  170 (234)
T d1xxla_         162 AYQDIQKWN  170 (234)
T ss_dssp             EEEEEEEEE
T ss_pred             ceeEEEEee
Confidence            887766544

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.5e-26  Score=185.14  Aligned_cols=148  Identities=18%  Similarity=0.156  Sum_probs=121.1

Q ss_pred             CCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec
Q psy2408          84 TSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF  163 (298)
Q Consensus        84 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~  163 (298)
                      ....++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|++++...+. .+++++++|+.++++++++||+|++.
T Consensus        56 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I~~~  134 (222)
T d2ex4a1          56 PNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQ  134 (222)
T ss_dssp             --CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEE
T ss_pred             cCCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-cccccccccccccccccccccccccc
Confidence            34456789999999999999988765667999999999999999999887665 36899999999998888999999999


Q ss_pred             ccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeC
Q psy2408         164 ESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       164 ~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  240 (298)
                      .+++|++++   .++++++++|+|||.+++.+........        .........++.+++.++++++||++++.+..
T Consensus       135 ~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q  206 (222)
T d2ex4a1         135 WVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI--------LDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ  206 (222)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE--------EETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc--------cccCCceeeCCHHHHHHHHHHcCCEEEEEEEe
Confidence            999999986   8999999999999999998765433211        01111233457889999999999999887653

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.92  E-value=1e-24  Score=178.61  Aligned_cols=159  Identities=16%  Similarity=0.084  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      .......+.+++.+...++.+|||+|||+|..+..++......|+++|+|+.|++.|++++...   +++++++.|+.++
T Consensus        76 ~~d~~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~  152 (254)
T d1xtpa_          76 DVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETA  152 (254)
T ss_dssp             HHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGC
T ss_pred             hhhHHHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEcccccc
Confidence            3445567788888888888999999999999999988766678999999999999999887543   3589999999999


Q ss_pred             CCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHH
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLL  227 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  227 (298)
                      ++++++||+|++..+++|++++   .+|++++++|+|||.+++.+........   .    ..........+.+++.+++
T Consensus       153 ~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~---~----~d~~d~~~~rs~~~~~~l~  225 (254)
T d1xtpa_         153 TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---L----VDKEDSSLTRSDIHYKRLF  225 (254)
T ss_dssp             CCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---E----EETTTTEEEBCHHHHHHHH
T ss_pred             ccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc---e----ecccCCceeCCHHHHHHHH
Confidence            8888999999999999999986   8899999999999999998765433211   0    0001122345778999999


Q ss_pred             HhCCCcEEEEEe
Q psy2408         228 NKSGFELIKIDD  239 (298)
Q Consensus       228 ~~~Gf~~~~~~~  239 (298)
                      +++||++++...
T Consensus       226 ~~aGf~ii~~~~  237 (254)
T d1xtpa_         226 NESGVRVVKEAF  237 (254)
T ss_dssp             HHHTCCEEEEEE
T ss_pred             HHcCCEEEEEEe
Confidence            999999987654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.91  E-value=2.2e-23  Score=168.01  Aligned_cols=193  Identities=15%  Similarity=0.126  Sum_probs=134.2

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccc
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIF  167 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~  167 (298)
                      ++.+|||||||+|.++..+++ .+.+|+|+|+|+.+++.|+.+..     .++.++++|+.++++ +++||+|++.++++
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~-~g~~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~-~~~fD~I~~~~vle   92 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQE-HFNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQL-PRRYDNIVLTHVLE   92 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTT-TCSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCC-SSCEEEEEEESCGG
T ss_pred             CCCcEEEEeCCCcHHHHHHHH-cCCeEEEEeCcHHHhhhhhcccc-----ccccccccccccccc-ccccccccccceeE
Confidence            466999999999999999988 57899999999999999987743     468999999988875 58999999999999


Q ss_pred             ccChH-HHHHHHh-hcccCCcEEEEEeCCCCCCC----------CChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEE
Q psy2408         168 HMNHS-AALNEAR-RVLKSGSILTLTDLPLLSVS----------KNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELI  235 (298)
Q Consensus       168 ~~~~~-~~l~~~~-r~LkpgG~l~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  235 (298)
                      |++++ .+|.++. ++|+|||.+++..++.....          .....+........+.+.++.+++..+++++||+++
T Consensus        93 h~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~  172 (225)
T d2p7ia1          93 HIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVT  172 (225)
T ss_dssp             GCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEE
T ss_pred             ecCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEE
Confidence            99999 9999998 89999999999876533210          000000011112234567789999999999999998


Q ss_pred             EEEeCCCCcccchHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhhccccccEEEEEEEe
Q psy2408         236 KIDDITSHVMPLLVPKLTEATLTYKKEIYKSIPNPEKSIDNWLYLFKYMSKNLGYIIVTAKK  297 (298)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~k  297 (298)
                      ....+......  ...|......      ..+  .+.+....-.+...+.+.-+-+.++|+|
T Consensus       173 ~~~~~~~kp~~--~~~~~~~~~~------~~~--~~~~~~~l~~l~~~~p~~~~~i~~va~k  224 (225)
T d2p7ia1         173 YRSGIFFKALA--NFQWDQILQT------DIL--SKEYLDGCYQLGQQYPDLCASIFLLCEK  224 (225)
T ss_dssp             EEEEEEECCSC--HHHHHHHHHT------TSS--CHHHHHHHHHHHTTCGGGEEEEEEEEEC
T ss_pred             EEEEEEecccc--HHHHHHHHhh------ccc--cHHHHHHHHHHHHHhhhhhhhhEEEEEc
Confidence            87654322211  1222222110      011  1233333333333344555778999988

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=2e-24  Score=172.11  Aligned_cols=139  Identities=29%  Similarity=0.370  Sum_probs=110.9

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      .++.+|||||||+|.++..+.     +++|+|+|+.|++.|+++        ++.++++|+.++++++++||+|++..++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~~l  101 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTI  101 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc--------cccccccccccccccccccccccccccc
Confidence            356689999999999887663     468999999999999864        4889999999999999999999999999


Q ss_pred             cccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHH---hhcccCCCCcchHHHHHHhCCCcEEEEEeC
Q psy2408         167 FHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVK---KNIHSNFILVEHYPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       167 ~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  240 (298)
                      +|++++ .+++++.++|+|||++++.+++......  ........   ...+..+++.+++.++|+++||+++++...
T Consensus       102 ~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~~  177 (208)
T d1vlma_         102 CFVDDPERALKEAYRILKKGGYLIVGIVDRESFLG--REYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT  177 (208)
T ss_dssp             GGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHH--HHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ccccccccchhhhhhcCCCCceEEEEecCCcchhH--HhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEEE
Confidence            999999 9999999999999999999876433111  00000000   012345678999999999999998877653

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.90  E-value=5e-23  Score=165.94  Aligned_cols=150  Identities=15%  Similarity=0.125  Sum_probs=118.2

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF  163 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~  163 (298)
                      +++.+|||+|||+|..+..+++.   .+++|+|+|+|+.|++.|++++...+...++.+...|+.+++  .+.+|+|+++
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~~~  115 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVILN  115 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEEEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeEEe
Confidence            67889999999999999999875   467999999999999999999988887778889999988765  4689999999


Q ss_pred             ccccccC--hH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh-------------------hcccCCCCcc
Q psy2408         164 ESIFHMN--HS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK-------------------NIHSNFILVE  221 (298)
Q Consensus       164 ~~l~~~~--~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~  221 (298)
                      .+++|++  ++ .+|++++++|+|||.+++.++..................                   .......+.+
T Consensus       116 ~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  195 (225)
T d1im8a_         116 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIE  195 (225)
T ss_dssp             SCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHH
T ss_pred             eeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHH
Confidence            9999986  45 999999999999999999987754432201111111000                   0112356788


Q ss_pred             hHHHHHHhCCCcEEEEE
Q psy2408         222 HYPDLLNKSGFELIKID  238 (298)
Q Consensus       222 ~~~~~l~~~Gf~~~~~~  238 (298)
                      ++..+|+++||+.++..
T Consensus       196 ~~~~~L~~aGF~~v~~~  212 (225)
T d1im8a_         196 THKVRLKNVGFSQVELW  212 (225)
T ss_dssp             HHHHHHHHHTCSEEEEE
T ss_pred             HHHHHHHHcCCCceEEe
Confidence            99999999999988753

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.90  E-value=9e-23  Score=167.20  Aligned_cols=165  Identities=16%  Similarity=0.183  Sum_probs=131.8

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND  155 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  155 (298)
                      ...+++.+.+.+..+|||||||+|.++..+++.. +.+++++|+ +++++.+++++...++.++++++.+|+.+. .+ .
T Consensus        69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~~-~  145 (253)
T d1tw3a2          69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LP-R  145 (253)
T ss_dssp             THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CS-S
T ss_pred             HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-cc-c
Confidence            4567778888888999999999999999999874 679999998 678999999999999989999999998763 33 5


Q ss_pred             CeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHH---HhhcccCCCCcchHHHHHHh
Q psy2408         156 SFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYV---KKNIHSNFILVEHYPDLLNK  229 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~  229 (298)
                      +||+|++..+++|+++.   .+|++++++|||||+|+|.+.................   ........++.++|.++|++
T Consensus       146 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~  225 (253)
T d1tw3a2         146 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAAS  225 (253)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHH
T ss_pred             chhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHH
Confidence            79999999999999887   8899999999999999999876544322122221111   11123445688999999999


Q ss_pred             CCCcEEEEEeCCCCc
Q psy2408         230 SGFELIKIDDITSHV  244 (298)
Q Consensus       230 ~Gf~~~~~~~~~~~~  244 (298)
                      +||+++++..++...
T Consensus       226 AGf~~~~v~~~~~p~  240 (253)
T d1tw3a2         226 AGLVVEEVRQLPSPT  240 (253)
T ss_dssp             TTEEEEEEEEEECSS
T ss_pred             CCCeEEEEEECCCCC
Confidence            999999988765543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=2.2e-22  Score=162.10  Aligned_cols=105  Identities=31%  Similarity=0.461  Sum_probs=95.7

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      +++.+|||||||+|..+..+++ .+.+|+|+|+|+.|++.|++++...+.  ++.++++|+.++++++++||+|++..++
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~-~~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~~~~~~fD~I~~~~~l  112 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLED-YGFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLSFEDKTFDYVIFIDSI  112 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred             CCCCEEEEECCCcchhhhhHhh-hhcccccccccccchhhhhhhhccccc--cccccccccccccccCcCceEEEEecch
Confidence            5778999999999999999998 588999999999999999999887764  4788999999999999999999999999


Q ss_pred             cccChH---HHHHHHhhcccCCcEEEEEeCC
Q psy2408         167 FHMNHS---AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       167 ~~~~~~---~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +|+++.   .+|+++.++|||||++++....
T Consensus       113 ~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         113 VHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             GGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            999843   8999999999999999987654

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.88  E-value=1e-21  Score=160.76  Aligned_cols=165  Identities=18%  Similarity=0.163  Sum_probs=129.8

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND  155 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  155 (298)
                      ...+++.+++.+..+|||||||+|.++..+++.+ +.+++++|+ +++++.+++++...++.+++.++.+|+.+ +.+ .
T Consensus        70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~  146 (256)
T d1qzza2          70 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-V  146 (256)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-C
T ss_pred             HHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-c
Confidence            4556777777888899999999999999999974 679999997 78999999999999998899999999876 444 4


Q ss_pred             CeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHH----hhcccCCCCcchHHHHHH
Q psy2408         156 SFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVK----KNIHSNFILVEHYPDLLN  228 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~  228 (298)
                      +||+|++..+++++++.   .+|++++++|+|||+++|.+..................    .......++.++|.++++
T Consensus       147 ~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~  226 (256)
T d1qzza2         147 TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAG  226 (256)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHH
T ss_pred             cchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHH
Confidence            69999999999999987   88999999999999999998754332221111221111    122345578999999999


Q ss_pred             hCCCcEEEEEeCCCCc
Q psy2408         229 KSGFELIKIDDITSHV  244 (298)
Q Consensus       229 ~~Gf~~~~~~~~~~~~  244 (298)
                      ++||++++....+...
T Consensus       227 ~AGf~~~~~~~~~~~~  242 (256)
T d1qzza2         227 SAGLALASERTSGSTT  242 (256)
T ss_dssp             TTTEEEEEEEEECCSS
T ss_pred             HCCCceeEEEEeCCcC
Confidence            9999999988765543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=1.4e-22  Score=165.42  Aligned_cols=136  Identities=21%  Similarity=0.247  Sum_probs=107.6

Q ss_pred             HHhhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeE
Q psy2408          35 VATLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRV  114 (298)
Q Consensus        35 ~~~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v  114 (298)
                      ..+|||.. ++.|+..+...              ......+....++.... +++.+|||+|||+|..+..+++ .+++|
T Consensus         5 ~~~~yd~~-a~~Yd~~~~~~--------------~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~v   67 (246)
T d2avna1           5 SWEFYDRI-ARAYDSMYETP--------------KWKLYHRLIGSFLEEYL-KNPCRVLDLGGGTGKWSLFLQE-RGFEV   67 (246)
T ss_dssp             HHHHHHHH-HHHHGGGGCSH--------------HHHHHHHHHHHHHHHHC-CSCCEEEEETCTTCHHHHHHHT-TTCEE
T ss_pred             HHHHHHHH-HHHHHHHhccc--------------cchHHHHHHHHHHHHhc-CCCCEEEEECCCCchhcccccc-cceEE
Confidence            45788877 77787653221              11223444444444433 4677999999999999999998 58899


Q ss_pred             EEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec-ccccccChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         115 DGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF-ESIFHMNHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       115 ~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~-~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +|+|+|+.|++.|+++.    .   ..++.+|+.++++++++||+|++. .+++|++++ .+|+++.++|||||.+++..
T Consensus        68 ~giD~s~~~l~~a~~~~----~---~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1          68 VLVDPSKEMLEVAREKG----V---KNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             EEEESCHHHHHHHHHHT----C---SCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeeccccccccccccc----c---cccccccccccccccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence            99999999999999763    1   246789999999999999999985 689999999 99999999999999999987


Q ss_pred             CC
Q psy2408         193 LP  194 (298)
Q Consensus       193 ~~  194 (298)
                      ++
T Consensus       141 ~~  142 (246)
T d2avna1         141 DN  142 (246)
T ss_dssp             EB
T ss_pred             CC
Confidence            54

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.88  E-value=8.1e-23  Score=166.97  Aligned_cols=111  Identities=20%  Similarity=0.178  Sum_probs=93.1

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDS  156 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  156 (298)
                      ...++....+ ++.+|||+|||+|..+..+++ .+.+|+|+|+|+.|++.|++++...++  +++++++|+.++++ +++
T Consensus        27 ~~~~~~~~~~-~~~~vLDiGCG~G~~~~~l~~-~g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~-~~~  101 (246)
T d1y8ca_          27 IIEKCVENNL-VFDDYLDLACGTGNLTENLCP-KFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI-NRK  101 (246)
T ss_dssp             HHHHHHTTTC-CTTEEEEETCTTSTTHHHHGG-GSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC-SCC
T ss_pred             HHHHHHHhCC-CCCeEEEEeCcCCHHHHHHHH-hCCccEeeccchhhhhhccccccccCc--cceeeccchhhhcc-ccc
Confidence            3344444443 457999999999999999998 578999999999999999999888775  58999999999876 478


Q ss_pred             eeEEEec-ccccccChH----HHHHHHhhcccCCcEEEEEe
Q psy2408         157 FDGGWFF-ESIFHMNHS----AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       157 fD~V~~~-~~l~~~~~~----~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ||+|+|. .+++|+.++    .+|++++++|+|||.+++..
T Consensus       102 fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  142 (246)
T d1y8ca_         102 FDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             EEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence            9999975 678888644    79999999999999999753

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.87  E-value=1.5e-21  Score=154.10  Aligned_cols=137  Identities=17%  Similarity=0.170  Sum_probs=109.4

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccc
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIF  167 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~  167 (298)
                      ++.+|||||||+|..+..+++ .+.+|+|+|+|+.+++.++++....+++ ++.+...|+..+++ +++||+|++..+++
T Consensus        30 ~~grvLDiGcG~G~~~~~la~-~g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~-~~~fD~I~~~~~~~  106 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAA-NGYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTF-DGEYDFILSTVVMM  106 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCC-CCCEEEEEEESCGG
T ss_pred             CCCcEEEECCCCCHHHHHHHH-HhhhhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccc-cccccEEEEeeeee
Confidence            345999999999999999998 5889999999999999999999988885 69999999999875 58999999999999


Q ss_pred             ccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEE
Q psy2408         168 HMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       168 ~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                      |+++.   .+++++.++|+|||++++.........+         ........++..++...+  +||+++...
T Consensus       107 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~---------~~~~~~~~~~~~el~~~~--~~~~i~~~~  169 (198)
T d2i6ga1         107 FLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFP---------CTVGFPFAFKEGELRRYY--EGWDMLKYN  169 (198)
T ss_dssp             GSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC------------------CCCCBCTTHHHHHT--TTSEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCC---------CCCCCCCccCHHHHHHHh--CCCeEEEee
Confidence            99765   8999999999999999998766433221         111123445566777776  588877644

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=3.3e-22  Score=163.72  Aligned_cols=141  Identities=21%  Similarity=0.426  Sum_probs=114.1

Q ss_pred             hhhcCCcccccccccCCceeEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEE
Q psy2408          37 TLYDSPEGQIGSVLFGGHMHWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDG  116 (298)
Q Consensus        37 ~~yd~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~  116 (298)
                      ++|+.. ++.|+.++.+...           . ..........++......++.+|||||||+|..+..+++ .+.+|+|
T Consensus         3 ~~~~~~-a~~Yd~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~-~~~~v~g   68 (251)
T d1wzna1           3 ELYTLL-AEYYDTIYRRRIE-----------R-VKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAE-RGYEVVG   68 (251)
T ss_dssp             GGGTTT-GGGHHHHTHHHHH-----------T-HHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHH-TTCEEEE
T ss_pred             chhHhh-HHHHHHHHHhhhh-----------h-HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcc-cceEEEE
Confidence            578888 8999886533210           0 112234566677777777888999999999999999998 5789999


Q ss_pred             EeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEec-ccccccChH---HHHHHHhhcccCCcEEEEEe
Q psy2408         117 ITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFF-ESIFHMNHS---AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       117 vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~-~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +|+|+.|++.|++++...++  ++.++++|+.+++++ ++||+|++. .+++|+..+   .+|++++++|||||++++..
T Consensus        69 vD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1          69 LDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             EESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Eeeccccccccccccccccc--cchheehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            99999999999999988765  589999999999876 689999986 577777543   99999999999999999865


Q ss_pred             CC
Q psy2408         193 LP  194 (298)
Q Consensus       193 ~~  194 (298)
                      .+
T Consensus       146 ~~  147 (251)
T d1wzna1         146 PC  147 (251)
T ss_dssp             EC
T ss_pred             cc
Confidence            44

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.87  E-value=1.3e-21  Score=162.56  Aligned_cols=161  Identities=20%  Similarity=0.307  Sum_probs=121.8

Q ss_pred             HHHHHHHhC-CCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          76 LSRIMINKT-SITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        76 ~~~~l~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      ....+++.+ .+.++.+|||+|||+|.++..++...  +.+|+|+|+|+.+++.|++++...+.  ++++++.|+.++++
T Consensus        14 ~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~~   91 (281)
T d2gh1a1          14 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL   91 (281)
T ss_dssp             HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC
T ss_pred             HHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccccccc
Confidence            345555543 55678899999999999999999863  57899999999999999999887664  68999999999887


Q ss_pred             CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCC-------CCC------ChhHHHHHHHhhc---cc
Q psy2408         153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLS-------VSK------NDNKFKEYVKKNI---HS  215 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~-------~~~------~~~~~~~~~~~~~---~~  215 (298)
                      + ++||+|++..+++|++++ .+++++.++|||||.+++.++.+..       ...      ....+...+....   ..
T Consensus        92 ~-~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (281)
T d2gh1a1          92 N-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGK  170 (281)
T ss_dssp             S-SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCC
T ss_pred             c-CCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCC
Confidence            5 689999999999999999 9999999999999999998865321       000      0111222222211   11


Q ss_pred             CCCCcchHHHHHHhCCCcEEEEEe
Q psy2408         216 NFILVEHYPDLLNKSGFELIKIDD  239 (298)
Q Consensus       216 ~~~~~~~~~~~l~~~Gf~~~~~~~  239 (298)
                      ......++..+|+++||..++...
T Consensus       171 ~~~i~~~l~~~l~eaGf~~i~~~~  194 (281)
T d2gh1a1         171 DGNIGMKIPIYLSELGVKNIECRV  194 (281)
T ss_dssp             CTTGGGTHHHHHHHTTCEEEEEEE
T ss_pred             CCCHHHHHHHHHHHcCCeEEEEEE
Confidence            122235688899999999887654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.86  E-value=7e-21  Score=155.80  Aligned_cols=116  Identities=21%  Similarity=0.174  Sum_probs=97.6

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC-CCCC
Q psy2408          78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF-DNDS  156 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~  156 (298)
                      ..+++.. .+++.+|||+|||+|..+..+++....+|+|+|+|+.|++.|++++...+...++.+.++|+...++ .+++
T Consensus        15 ~~lI~~~-~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~   93 (252)
T d1ri5a_          15 ACLIRLY-TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKE   93 (252)
T ss_dssp             HHHHHHH-CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSC
T ss_pred             HHHHHHh-CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccccccc
Confidence            3444443 4688999999999999999998854468999999999999999999887777789999999977654 4678


Q ss_pred             eeEEEecccccccCh----H-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         157 FDGGWFFESIFHMNH----S-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       157 fD~V~~~~~l~~~~~----~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ||+|++..+++|+.+    . .+++++.++|+|||++++..+.
T Consensus        94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_          94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence            999999999999742    2 8999999999999999987543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.83  E-value=1.7e-20  Score=147.85  Aligned_cols=149  Identities=12%  Similarity=0.092  Sum_probs=114.5

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCceEEEECCC
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL-----------LDKVNFLHGDA  147 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-----------~~~i~~~~~d~  147 (298)
                      ..+..+.++|+.+|||+|||+|..+..|++ .|.+|+|+|+|+.|++.|++++...+.           ...+.+.++|+
T Consensus        11 ~~~~~l~~~~~~rvLd~GCG~G~~a~~la~-~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   89 (201)
T d1pjza_          11 QYWSSLNVVPGARVLVPLCGKSQDMSWLSG-QGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   89 (201)
T ss_dssp             HHHHHHCCCTTCEEEETTTCCSHHHHHHHH-HCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHHHHcCCCCCCEEEEecCcCCHHHHHHHH-cCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence            345667788999999999999999999998 589999999999999999999865432           13467888999


Q ss_pred             CCCC-CCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchH
Q psy2408         148 LNLP-FDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHY  223 (298)
Q Consensus       148 ~~~~-~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (298)
                      ..++ .+..+||+|++..+++|+++.   .+++++.++|||||++++..........           .......+.+++
T Consensus        90 ~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~-----------~~p~~~~~~~el  158 (201)
T d1pjza_          90 FALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALL-----------EGPPFSVPQTWL  158 (201)
T ss_dssp             SSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSS-----------SSCCCCCCHHHH
T ss_pred             cccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccC-----------CCccccCCHHHH
Confidence            8874 335789999999999999875   9999999999999998887665443222           011233456667


Q ss_pred             HHHHHhCCCcEEEEEeC
Q psy2408         224 PDLLNKSGFELIKIDDI  240 (298)
Q Consensus       224 ~~~l~~~Gf~~~~~~~~  240 (298)
                      .+++ ..+|.+......
T Consensus       159 ~~l~-~~~~~i~~~~~~  174 (201)
T d1pjza_         159 HRVM-SGNWEVTKVGGQ  174 (201)
T ss_dssp             HHTS-CSSEEEEEEEES
T ss_pred             HHHh-CCCcEEEEEEEe
Confidence            6665 467876655543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.3e-20  Score=148.88  Aligned_cols=152  Identities=14%  Similarity=0.108  Sum_probs=118.4

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC----------------CC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEG----------------LL  137 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~----------------~~  137 (298)
                      ..+.+.+.+.+.+.++.+|||+|||+|..+..|++ .|.+|+|+|+|+.+++.|++......                ..
T Consensus        31 ~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~-~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (229)
T d2bzga1          31 QLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFAD-RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSS  109 (229)
T ss_dssp             HHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHH-TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecC
Confidence            34455555666678889999999999999999999 68999999999999999998865321                12


Q ss_pred             CceEEEECCCCCC-CCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhc
Q psy2408         138 DKVNFLHGDALNL-PFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNI  213 (298)
Q Consensus       138 ~~i~~~~~d~~~~-~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~  213 (298)
                      .+++++++|+..+ +...+.||+|+...+++|++..   .+++++.++|+|||++++..+.......           ..
T Consensus       110 ~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~-----------~g  178 (229)
T d2bzga1         110 GNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKH-----------PG  178 (229)
T ss_dssp             SSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTC-----------CC
T ss_pred             CcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCC-----------CC
Confidence            4689999999887 3556899999999999999755   9999999999999998888766433211           11


Q ss_pred             ccCCCCcchHHHHHHhCCCcEEEEE
Q psy2408         214 HSNFILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       214 ~~~~~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                      .+...+.+++..++.. +|.+..++
T Consensus       179 pp~~~~~~el~~lf~~-~~~i~~le  202 (229)
T d2bzga1         179 PPFYVPHAEIERLFGK-ICNIRCLE  202 (229)
T ss_dssp             SSCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred             CCCCCCHHHHHHHhcC-CCEEEEEE
Confidence            2345678888888854 77765544

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.82  E-value=1.7e-20  Score=150.30  Aligned_cols=145  Identities=17%  Similarity=0.204  Sum_probs=114.5

Q ss_pred             HhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-CCCCCCeeE
Q psy2408          82 NKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-PFDNDSFDG  159 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~  159 (298)
                      +.+++.||.+|||+|||+|..+..+++. .+..|+|+|+|+.|++.+++++...   +++.++..|.... ++.+..+|+
T Consensus        68 ~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~v  144 (230)
T d1g8sa_          68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKV  144 (230)
T ss_dssp             CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTCCCE
T ss_pred             HhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCccccccccee
Confidence            4567899999999999999999999996 3569999999999999999887654   4678888888765 345677888


Q ss_pred             EEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEEEE
Q psy2408         160 GWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       160 V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                      +++...+++..++ .++.++.+.|||||.+++...........+  ....           .++..+.|+++||++++..
T Consensus       145 ~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~--~~~~-----------~~e~~~~L~~aGF~ive~i  211 (230)
T d1g8sa_         145 DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKD--PKEI-----------FKEQKEILEAGGFKIVDEV  211 (230)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSC--HHHH-----------HHHHHHHHHHHTEEEEEEE
T ss_pred             EEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCC--HHHH-----------HHHHHHHHHHcCCEEEEEe
Confidence            8888888888888 999999999999999999876543322201  1111           2467789999999999887


Q ss_pred             eCCC
Q psy2408         239 DITS  242 (298)
Q Consensus       239 ~~~~  242 (298)
                      ++..
T Consensus       212 dL~p  215 (230)
T d1g8sa_         212 DIEP  215 (230)
T ss_dssp             ECTT
T ss_pred             cCCC
Confidence            7643

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.8e-21  Score=155.42  Aligned_cols=151  Identities=19%  Similarity=0.070  Sum_probs=111.2

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCc---------------------------
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDK---------------------------  139 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~---------------------------  139 (298)
                      .++.+|||+|||+|..+..++.....+|+|+|+|+.|++.|++++........                           
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            46789999999999988777764344799999999999999999875542210                           


Q ss_pred             -e-EEEECCC----CCCCCCCCCeeEEEecccccccC----hH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHH
Q psy2408         140 -V-NFLHGDA----LNLPFDNDSFDGGWFFESIFHMN----HS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEY  208 (298)
Q Consensus       140 -i-~~~~~d~----~~~~~~~~~fD~V~~~~~l~~~~----~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~  208 (298)
                       + .....+.    ...+++.++||+|++..+++|+.    +. .+++++.++|||||.+++.++.......       .
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~-------~  202 (257)
T d2a14a1         130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM-------V  202 (257)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE-------E
T ss_pred             hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccce-------e
Confidence             0 1122222    22256678999999999999996    34 8999999999999999998876433111       0


Q ss_pred             HHhhcccCCCCcchHHHHHHhCCCcEEEEEeCCCCc
Q psy2408         209 VKKNIHSNFILVEHYPDLLNKSGFELIKIDDITSHV  244 (298)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~  244 (298)
                      ........+++.++++++|+++||++++++......
T Consensus       203 ~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~  238 (257)
T d2a14a1         203 GKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSY  238 (257)
T ss_dssp             TTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCC
T ss_pred             ccccccccCCCHHHHHHHHHHCCCEEEEEEEecccc
Confidence            111223456789999999999999999887655443

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.2e-19  Score=150.71  Aligned_cols=159  Identities=13%  Similarity=0.143  Sum_probs=112.4

Q ss_pred             HHHHHhCC-CCCCCeEEEeCCCCCHHHHHHHHhc-------CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEE--EECCC
Q psy2408          78 RIMINKTS-ITKGQRFIDIGCGFGLSGIRLAKAK-------GCRVDGITISKFQQESAMKTAKAEGLLDKVNF--LHGDA  147 (298)
Q Consensus        78 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-------~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~--~~~d~  147 (298)
                      ..++..+. .++..+|||||||+|..+..++...       ...++|+|+|+.|++.+++++.......++.+  ...++
T Consensus        29 ~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  108 (280)
T d1jqea_          29 PGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETS  108 (280)
T ss_dssp             HHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCH
T ss_pred             HHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhh
Confidence            33444443 3445589999999999988876641       24689999999999999999875433234443  33333


Q ss_pred             CC------CCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHh---hcccCC
Q psy2408         148 LN------LPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKK---NIHSNF  217 (298)
Q Consensus       148 ~~------~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~  217 (298)
                      ..      .+.++++||+|++.++++|++++ .+|++++++|+|||.+++..........  ..+..+...   .....+
T Consensus       109 ~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~--~l~~~~~~~~~~~~~~~~  186 (280)
T d1jqea_         109 SEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWD--KLWKKYGSRFPQDDLCQY  186 (280)
T ss_dssp             HHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHH--HHHHHHGGGSCCCTTSCC
T ss_pred             hhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcchHH--HHHHHHHHhcCCCccccc
Confidence            22      24567899999999999999999 9999999999999999998765432111  112222222   223446


Q ss_pred             CCcchHHHHHHhCCCcEEEEE
Q psy2408         218 ILVEHYPDLLNKSGFELIKID  238 (298)
Q Consensus       218 ~~~~~~~~~l~~~Gf~~~~~~  238 (298)
                      ++.+++..+|++.||..+...
T Consensus       187 ~~~~~~~~~L~~~G~~~~~~~  207 (280)
T d1jqea_         187 ITSDDLTQMLDNLGLKYECYD  207 (280)
T ss_dssp             CCHHHHHHHHHHHTCCEEEEE
T ss_pred             CCHHHHHHHHHHCCCceEEEe
Confidence            778889999999999866543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.81  E-value=8.5e-20  Score=142.23  Aligned_cols=117  Identities=21%  Similarity=0.199  Sum_probs=103.4

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      .++...++..+.+.++.+|||+|||+|.++..+++ .+.+|+++|+++.+++.|+++++..++.++++++++|+.+...+
T Consensus        19 ~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~-~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~   97 (186)
T d1l3ia_          19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAG-RVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK   97 (186)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHT-TSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEECCeEcccccccc-cceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccc
Confidence            56777888889999999999999999999999988 46799999999999999999999999988999999999887666


Q ss_pred             CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .+.||+|++.....   .. .+++.+.+.|||||++++....
T Consensus        98 ~~~~D~v~~~~~~~---~~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_          98 IPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             SCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             cCCcCEEEEeCccc---cchHHHHHHHHHhCcCCEEEEEeec
Confidence            78999999876554   34 7899999999999999987544

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.8e-20  Score=149.07  Aligned_cols=144  Identities=19%  Similarity=0.250  Sum_probs=107.0

Q ss_pred             hhhHHhhhcCCcccccccccCCcee------EeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Q psy2408          32 KKTVATLYDSPEGQIGSVLFGGHMH------WGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIR  105 (298)
Q Consensus        32 ~~~~~~~yd~~~~~~y~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~  105 (298)
                      .+++...|+.. +.-|+.. .....      ...|.            ..+.+.+.+.+. .+|.+|||||||+|..+..
T Consensus         6 ~e~~~~~w~~~-~~~yd~~-~~~l~~~~~~~m~~w~------------~~~~~~la~~~~-~~g~~VLdIGcG~G~~a~~   70 (229)
T d1zx0a1           6 GENCSPAWGAA-PAAYDAA-DTHLRILGKPVMERWE------------TPYMHALAAAAS-SKGGRVLEVGFGMAIAASK   70 (229)
T ss_dssp             TCBCHHHHTTS-CEEECTT-SCEEEETTEEEEEGGG------------HHHHHHHHHHHT-TTCEEEEEECCTTSHHHHH
T ss_pred             cccchhhhhhh-hhcCCcH-HHHHHHhchHHHHHHH------------HHHHHHHHHhhc-cCCCeEEEeeccchHHHHH
Confidence            34567778887 6667643 11111      11232            233344444443 5788999999999999999


Q ss_pred             HHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCCCeeEEE-----ecccccccChH-HHHHH
Q psy2408         106 LAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDNDSFDGGW-----FFESIFHMNHS-AALNE  177 (298)
Q Consensus       106 l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~-----~~~~l~~~~~~-~~l~~  177 (298)
                      +++..+.+++++|+|+.+++.|++++...+  .++.++..++...  ++++++||.|+     +...++|+.++ .++++
T Consensus        71 ~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~  148 (229)
T d1zx0a1          71 VQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNH  148 (229)
T ss_dssp             HHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHT
T ss_pred             HHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccccccccceeecccccccccccccCHHHHHHH
Confidence            998655789999999999999999987665  3577788776543  56678999887     46778888888 99999


Q ss_pred             HhhcccCCcEEEEEe
Q psy2408         178 ARRVLKSGSILTLTD  192 (298)
Q Consensus       178 ~~r~LkpgG~l~i~~  192 (298)
                      ++|+|||||+|++.+
T Consensus       149 ~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         149 AFRLLKPGGVLTYCN  163 (229)
T ss_dssp             HHHHEEEEEEEEECC
T ss_pred             HHHHcCCCcEEEEEe
Confidence            999999999998743

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.79  E-value=9.8e-19  Score=137.09  Aligned_cols=115  Identities=18%  Similarity=0.315  Sum_probs=100.3

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEECCCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD-KVNFLHGDALNLPFDND  155 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~  155 (298)
                      .+.+++.+.+.++.+|||+|||+|.++..++. .+.+|+++|+|+.+++.+++++...++.. ++++..+|+.+ +++++
T Consensus        41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~-~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~  118 (194)
T d1dusa_          41 TKILVENVVVDKDDDILDLGCGYGVIGIALAD-EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDR  118 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTS
T ss_pred             HHHHHHhCCcCCCCeEEEEeecCChhHHHHHh-hccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccC
Confidence            45577888888999999999999999999988 56799999999999999999999888754 68999999987 55678


Q ss_pred             CeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeC
Q psy2408         156 SFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +||+|++..++++..+.  .+++++.++|+|||.+++...
T Consensus       119 ~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  158 (194)
T d1dusa_         119 KYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             CEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence            99999999888777665  899999999999999887543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.79  E-value=3.4e-19  Score=143.77  Aligned_cols=136  Identities=14%  Similarity=0.185  Sum_probs=108.0

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      ...++.++++.||++|||+|||+|.++..+++..  +++|+++|.++++++.|+++++..+...++++..+|+.+. +++
T Consensus        74 ~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~  152 (250)
T d1yb2a1          74 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISD  152 (250)
T ss_dssp             -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCS
T ss_pred             HHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-ccc
Confidence            4567888999999999999999999999999863  5699999999999999999999877678899999999885 457


Q ss_pred             CCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCc
Q psy2408         155 DSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFE  233 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  233 (298)
                      ++||+|++     +++++ .++.++.++|||||++++..+..       ..               .....+.|+++||.
T Consensus       153 ~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~i-------~Q---------------v~~~~~~l~~~gf~  205 (250)
T d1yb2a1         153 QMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNF-------DQ---------------SEKTVLSLSASGMH  205 (250)
T ss_dssp             CCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSH-------HH---------------HHHHHHHSGGGTEE
T ss_pred             ceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCCc-------Ch---------------HHHHHHHHHHCCCc
Confidence            89999975     57888 99999999999999999865541       11               22455677889998


Q ss_pred             EEEEEeC
Q psy2408         234 LIKIDDI  240 (298)
Q Consensus       234 ~~~~~~~  240 (298)
                      .++..+.
T Consensus       206 ~i~~~E~  212 (250)
T d1yb2a1         206 HLETVEL  212 (250)
T ss_dssp             EEEEEEE
T ss_pred             eeEEEEE
Confidence            7765543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=3.9e-19  Score=144.11  Aligned_cols=136  Identities=20%  Similarity=0.185  Sum_probs=106.3

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      .-+.+.+.+..  .++.+|||+|||+|.++..+++ .|++|+|+|+|+.+++.|+++++.+++.  +.++++|+.+. ++
T Consensus       108 ~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~-~g~~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~-~~  181 (254)
T d2nxca1         108 RLALKALARHL--RPGDKVLDLGTGSGVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-LP  181 (254)
T ss_dssp             HHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-GG
T ss_pred             hHHHHHHHhhc--CccCEEEEcccchhHHHHHHHh-cCCEEEEEECChHHHHHHHHHHHHcCCc--eeEEecccccc-cc
Confidence            33444443333  6889999999999999998877 6889999999999999999999998874  67888887653 45


Q ss_pred             CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCC
Q psy2408         154 NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGF  232 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  232 (298)
                      .++||+|+++...+   .. .+++++.++|||||+++++.+...                      ..+++.+.++++||
T Consensus       182 ~~~fD~V~ani~~~---~l~~l~~~~~~~LkpGG~lilSgil~~----------------------~~~~v~~~~~~~Gf  236 (254)
T d2nxca1         182 FGPFDLLVANLYAE---LHAALAPRYREALVPGGRALLTGILKD----------------------RAPLVREAMAGAGF  236 (254)
T ss_dssp             GCCEEEEEEECCHH---HHHHHHHHHHHHEEEEEEEEEEEEEGG----------------------GHHHHHHHHHHTTC
T ss_pred             ccccchhhhccccc---cHHHHHHHHHHhcCCCcEEEEEecchh----------------------hHHHHHHHHHHCCC
Confidence            68999999864332   23 888999999999999999754310                      13467888999999


Q ss_pred             cEEEEEeC
Q psy2408         233 ELIKIDDI  240 (298)
Q Consensus       233 ~~~~~~~~  240 (298)
                      .+++....
T Consensus       237 ~~~~~~~~  244 (254)
T d2nxca1         237 RPLEEAAE  244 (254)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            98876543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=6.2e-19  Score=143.04  Aligned_cols=116  Identities=19%  Similarity=0.231  Sum_probs=103.1

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhc--CCCCceEEEECCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAE--GLLDKVNFLHGDALN  149 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~--~~~~~i~~~~~d~~~  149 (298)
                      ..-...++..+.+.||++|||+|||+|.++..|++..  ..+|+++|+++++++.|++++...  ....++.++++|+.+
T Consensus        82 pkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~  161 (264)
T d1i9ga_          82 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD  161 (264)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             hHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc
Confidence            3456778899999999999999999999999999974  469999999999999999988754  445789999999998


Q ss_pred             CCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         150 LPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       150 ~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .++++++||+|++     ++++| .++.++.++|||||++++..++
T Consensus       162 ~~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~  202 (264)
T d1i9ga_         162 SELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVAT  202 (264)
T ss_dssp             CCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             ccccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCc
Confidence            8888999999975     78999 9999999999999999987665

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.6e-19  Score=146.20  Aligned_cols=148  Identities=15%  Similarity=0.026  Sum_probs=107.3

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCC---------------------------
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD---------------------------  138 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~---------------------------  138 (298)
                      ...|.+|||+|||+|..+...+.....+|+|+|+|+.|++.++..+......-                           
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  131 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence            34688999999999988766665456689999999999999998765432110                           


Q ss_pred             --ceEEEECCCCCC------CCCCCCeeEEEecccccccC----hH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHH
Q psy2408         139 --KVNFLHGDALNL------PFDNDSFDGGWFFESIFHMN----HS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKF  205 (298)
Q Consensus       139 --~i~~~~~d~~~~------~~~~~~fD~V~~~~~l~~~~----~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~  205 (298)
                        ...+...|+..-      +.+.++||+|++..+++|+.    +. .+++++.++|||||.|++.++.......     
T Consensus       132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~-----  206 (263)
T d2g72a1         132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYL-----  206 (263)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEE-----
T ss_pred             hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccc-----
Confidence              113445565432      23456899999999999986    34 8999999999999999998765332111     


Q ss_pred             HHHHHhhcccCCCCcchHHHHHHhCCCcEEEEEeC
Q psy2408         206 KEYVKKNIHSNFILVEHYPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  240 (298)
                        ..........++.+++.++|+++||++++.+..
T Consensus       207 --~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~~~  239 (263)
T d2g72a1         207 --AGEARLTVVPVSEEEVREALVRSGYKVRDLRTY  239 (263)
T ss_dssp             --ETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             --cCCcccccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence              001112334678999999999999999876643

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=1.6e-18  Score=141.52  Aligned_cols=139  Identities=21%  Similarity=0.221  Sum_probs=116.4

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      .-...++..+++.||.+|||+|||+|.++..+++..  +++|+++|+++++++.|+++++..++.+++.+...|+.. .+
T Consensus        90 kd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~  168 (266)
T d1o54a_          90 KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GF  168 (266)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CC
T ss_pred             HHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-cc
Confidence            456678999999999999999999999999999864  579999999999999999999999988889999999755 34


Q ss_pred             CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCC
Q psy2408         153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSG  231 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  231 (298)
                      +...||.|+     .+++++ .++.++.++|||||++++..+..       .               ....+.+.|++.|
T Consensus       169 ~~~~~D~V~-----~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~-------~---------------Qv~~~~~~l~~~g  221 (266)
T d1o54a_         169 DEKDVDALF-----LDVPDPWNYIDKCWEALKGGGRFATVCPTT-------N---------------QVQETLKKLQELP  221 (266)
T ss_dssp             SCCSEEEEE-----ECCSCGGGTHHHHHHHEEEEEEEEEEESSH-------H---------------HHHHHHHHHHHSS
T ss_pred             cccceeeeE-----ecCCCHHHHHHHHHhhcCCCCEEEEEeCcc-------c---------------HHHHHHHHHHHCC
Confidence            567899885     478899 99999999999999999876541       1               1235667788999


Q ss_pred             CcEEEEEeCC
Q psy2408         232 FELIKIDDIT  241 (298)
Q Consensus       232 f~~~~~~~~~  241 (298)
                      |..++..+..
T Consensus       222 F~~i~~~E~l  231 (266)
T d1o54a_         222 FIRIEVWESL  231 (266)
T ss_dssp             EEEEEEECCC
T ss_pred             ceeEEEEEEE
Confidence            9887776543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.77  E-value=1.2e-18  Score=137.59  Aligned_cols=116  Identities=14%  Similarity=0.096  Sum_probs=91.7

Q ss_pred             HHHHHHH--hCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          76 LSRIMIN--KTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        76 ~~~~l~~--~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      +...++.  .+.++||.+|||+|||+|..+..+++.. ..+|+|+|+|+.|++.+++++...   +++.++..|+...+.
T Consensus        42 laa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~  118 (209)
T d1nt2a_          42 LAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWK  118 (209)
T ss_dssp             HHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGG
T ss_pred             HHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc---CCceEEEeeccCccc
Confidence            3344443  4778999999999999999999999864 469999999999999999998875   379999999988644


Q ss_pred             CCCCeeEEE-ecccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         153 DNDSFDGGW-FFESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       153 ~~~~fD~V~-~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ....+|.|. +...+.|..+. .+++++.++|||||++++....
T Consensus       119 ~~~~~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  162 (209)
T d1nt2a_         119 YSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKA  162 (209)
T ss_dssp             TTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cccccceEEEEEecccChhhHHHHHHHHHHHhccCCeEEEEEEc
Confidence            444444332 23446666777 9999999999999999997644

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2.1e-18  Score=141.96  Aligned_cols=111  Identities=24%  Similarity=0.297  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      ..+.+...+...+. .++.+|||+|||+|..+..+++.. +.+++|+|+|+.|++.|+++.      .++.++++|+.++
T Consensus        69 l~~~~~~~l~~~~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l  141 (268)
T d1p91a_          69 LRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL  141 (268)
T ss_dssp             HHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC
T ss_pred             HHHHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhc
Confidence            34555555666654 466799999999999999999864 679999999999999998763      4689999999999


Q ss_pred             CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPL  195 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~  195 (298)
                      |+++++||+|++.+++++      ++++.|+|||||++++..++.
T Consensus       142 ~~~~~sfD~v~~~~~~~~------~~e~~rvLkpgG~l~~~~p~~  180 (268)
T d1p91a_         142 PFSDTSMDAIIRIYAPCK------AEELARVVKPGGWVITATPGP  180 (268)
T ss_dssp             SBCTTCEEEEEEESCCCC------HHHHHHHEEEEEEEEEEEECT
T ss_pred             cCCCCCEEEEeecCCHHH------HHHHHHHhCCCcEEEEEeeCC
Confidence            999999999999888765      578999999999999998763

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=4.6e-18  Score=134.80  Aligned_cols=113  Identities=19%  Similarity=0.213  Sum_probs=98.3

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ..+...+++.+.++++++|||||||+|..+..+++..  ..+|+++|+++.+++.|++++...++. ++.++++|..+..
T Consensus        61 P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-n~~~~~~d~~~~~  139 (213)
T d1dl5a1          61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGV  139 (213)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCC
T ss_pred             chhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-ccccccCchHHcc
Confidence            3556778899999999999999999999999999864  468999999999999999999988874 6889999988766


Q ss_pred             CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         152 FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ..+++||+|++..+++++++     ++.+.|||||+|++..
T Consensus       140 ~~~~~fD~I~~~~~~~~~p~-----~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         140 PEFSPYDVIFVTVGVDEVPE-----TWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             GGGCCEEEEEECSBBSCCCH-----HHHHHEEEEEEEEEEB
T ss_pred             ccccchhhhhhhccHHHhHH-----HHHHhcCCCcEEEEEE
Confidence            56788999999999998876     4567899999998843

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=2.4e-17  Score=137.48  Aligned_cols=116  Identities=21%  Similarity=0.290  Sum_probs=88.3

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCC---ceEEEECCCCCCC---
Q psy2408          78 RIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD---KVNFLHGDALNLP---  151 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~---~i~~~~~d~~~~~---  151 (298)
                      ..+.+.++..++.+|||+|||+|..+..|++ .|.+|+|+|+|+.|++.|+++....+...   ...+...++..++   
T Consensus        46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~-~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T d1xvaa_          46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVE-EGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV  124 (292)
T ss_dssp             HHHHHHHHHTTCCEEEESSCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred             HHHHHHhhhcCCCEEEEecCCCcHHHHHHHH-cCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccccc
Confidence            3344444445678999999999999999998 58899999999999999999987665431   2334555543321   


Q ss_pred             CCCCCeeEEEec-ccccccCh-------H-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 FDNDSFDGGWFF-ESIFHMNH-------S-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 ~~~~~fD~V~~~-~~l~~~~~-------~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .+.++||+|++. .+++|+++       . .+|++++++|||||+|++...+
T Consensus       125 ~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  176 (292)
T d1xvaa_         125 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  176 (292)
T ss_dssp             CCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence            135789999875 58888864       2 7999999999999999986543

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.4e-16  Score=133.10  Aligned_cols=115  Identities=23%  Similarity=0.267  Sum_probs=95.1

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhc----------CCCCceEE
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAE----------GLLDKVNF  142 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~----------~~~~~i~~  142 (298)
                      .-...|+..+++.||.+|||+|||+|.++..|++..  .++|+++|+++++++.|+++++..          +..+++.+
T Consensus        85 kD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~  164 (324)
T d2b25a1          85 KDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF  164 (324)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred             ccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeE
Confidence            345678888999999999999999999999999974  469999999999999999998753          34578999


Q ss_pred             EECCCCCCC--CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         143 LHGDALNLP--FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       143 ~~~d~~~~~--~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .+.|+....  +++..||.|++     .+++| .++.++.++|||||+|++..++
T Consensus       165 ~~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~  214 (324)
T d2b25a1         165 IHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVN  214 (324)
T ss_dssp             EESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred             EecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCC
Confidence            999998753  45678999975     57888 9999999999999999987555

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.70  E-value=3.3e-16  Score=126.19  Aligned_cols=156  Identities=11%  Similarity=0.110  Sum_probs=116.4

Q ss_pred             HHHHHHHHHhCC-CCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          74 DKLSRIMINKTS-ITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        74 ~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ......+++.+. .+...+|||||||+|.++..++++ ++.+++.+|+ +..+       +..+..++++++.+|+.+ +
T Consensus        66 ~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi-------~~~~~~~ri~~~~gd~~~-~  136 (244)
T d1fp1d2          66 ATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVI-------ENAPPLSGIEHVGGDMFA-S  136 (244)
T ss_dssp             HHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-------TTCCCCTTEEEEECCTTT-C
T ss_pred             HHHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhh-------hccCCCCCeEEecCCccc-c
Confidence            344556777776 466689999999999999999987 4689999998 3332       334455789999999976 4


Q ss_pred             CCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhH--HHHHHH----hhcccCCCCcch
Q psy2408         152 FDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNK--FKEYVK----KNIHSNFILVEH  222 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~  222 (298)
                      .|  ..|++++..++|++++.   .+|+++++.|+|||+++|.+...+........  ......    ......-.+.++
T Consensus       137 ~p--~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e  214 (244)
T d1fp1d2         137 VP--QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQ  214 (244)
T ss_dssp             CC--CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHH
T ss_pred             cc--cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHH
Confidence            44  46999999999999987   99999999999999999999865443321111  111111    112344568899


Q ss_pred             HHHHHHhCCCcEEEEEeC
Q psy2408         223 YPDLLNKSGFELIKIDDI  240 (298)
Q Consensus       223 ~~~~l~~~Gf~~~~~~~~  240 (298)
                      |.++|+++||+.+++...
T Consensus       215 ~~~ll~~AGF~~v~v~~~  232 (244)
T d1fp1d2         215 YEKLSKLSGFSKFQVACR  232 (244)
T ss_dssp             HHHHHHHTTCSEEEEEEE
T ss_pred             HHHHHHHcCCCceEEEec
Confidence            999999999999887543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.7e-17  Score=129.20  Aligned_cols=113  Identities=17%  Similarity=0.207  Sum_probs=95.6

Q ss_pred             HHHHHHHHhC--CCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCC----CceEEEECC
Q psy2408          75 KLSRIMINKT--SITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLL----DKVNFLHGD  146 (298)
Q Consensus        75 ~~~~~l~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~----~~i~~~~~d  146 (298)
                      .+...+++.+  .+++|.+|||||||+|..+..+++..  ..+|+++|+++++++.|++++...++.    .++.++.+|
T Consensus        61 ~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD  140 (224)
T d1i1na_          61 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD  140 (224)
T ss_dssp             HHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC
T ss_pred             HHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEee
Confidence            3456677776  67899999999999999999998863  469999999999999999998876542    468999999


Q ss_pred             CCCCCCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         147 ALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       147 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ......+.++||+|++..++.++++     .+.+.|||||++++..
T Consensus       141 ~~~~~~~~~~fD~I~~~~~~~~ip~-----~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         141 GRMGYAEEAPYDAIHVGAAAPVVPQ-----ALIDQLKPGGRLILPV  181 (224)
T ss_dssp             GGGCCGGGCCEEEEEECSBBSSCCH-----HHHHTEEEEEEEEEEE
T ss_pred             cccccchhhhhhhhhhhcchhhcCH-----HHHhhcCCCcEEEEEE
Confidence            9887666789999999999998876     4678999999999854

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=3.2e-16  Score=124.58  Aligned_cols=149  Identities=13%  Similarity=0.110  Sum_probs=106.6

Q ss_pred             HHHHHHH---HhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC
Q psy2408          75 KLSRIMI---NKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN  149 (298)
Q Consensus        75 ~~~~~l~---~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~  149 (298)
                      ++...++   +.+.++||++|||+|||+|..+..+++..  ..+|+++|+|+.+++.+++.++..   .++..+..|...
T Consensus        57 Klaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~~~~~i~~d~~~  133 (227)
T d1g8aa_          57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATK  133 (227)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTC
T ss_pred             HHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---CCceEEEEECCC
Confidence            3444454   45678999999999999999999999974  479999999999999999988654   357788888765


Q ss_pred             C---CCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHH
Q psy2408         150 L---PFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPD  225 (298)
Q Consensus       150 ~---~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (298)
                      .   +.....+|+|++  .+.+..+. .+++++.+.|||||+++++.........  .......           .+...
T Consensus       134 ~~~~~~~~~~vD~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~--~~~~~v~-----------~~v~~  198 (227)
T d1g8aa_         134 PEEYRALVPKVDVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVT--KEPEQVF-----------REVER  198 (227)
T ss_dssp             GGGGTTTCCCEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTT--SCHHHHH-----------HHHHH
T ss_pred             cccccccccceEEEEE--EccccchHHHHHHHHHHhcccCCeEEEEEECCccCCC--CCHHHHH-----------HHHHH
Confidence            3   334467888865  35555666 9999999999999999997654322221  0001111           12333


Q ss_pred             HHHhCCCcEEEEEeCCC
Q psy2408         226 LLNKSGFELIKIDDITS  242 (298)
Q Consensus       226 ~l~~~Gf~~~~~~~~~~  242 (298)
                       +.+.||++++..++..
T Consensus       199 -l~~~gf~iie~i~L~p  214 (227)
T d1g8aa_         199 -ELSEYFEVIERLNLEP  214 (227)
T ss_dssp             -HHHTTSEEEEEEECTT
T ss_pred             -HHHcCCEEEEEEcCCC
Confidence             4467999998766543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.8e-17  Score=140.01  Aligned_cols=126  Identities=18%  Similarity=0.236  Sum_probs=101.5

Q ss_pred             cHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhc-------CC-CC
Q psy2408          68 NFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAE-------GL-LD  138 (298)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~-------~~-~~  138 (298)
                      .+.+........+++.+++.++.+|||+|||+|..+..++...++ +++|+|+|+.+++.|++.....       |+ ..
T Consensus       131 ~~~e~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~  210 (328)
T d1nw3a_         131 VYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA  210 (328)
T ss_dssp             CCCCCCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             chhhhHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCC
Confidence            334455677888999999999999999999999999999987665 7999999999999998875542       22 34


Q ss_pred             ceEEEECCCCCCCCCCCCe--eEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         139 KVNFLHGDALNLPFDNDSF--DGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       139 ~i~~~~~d~~~~~~~~~~f--D~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ++.++++|+.+.++.+..+  |+|++ ..+.|.++. ..|.++.+.|||||++++....
T Consensus       211 ~i~~~~gd~~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~  268 (328)
T d1nw3a_         211 EYTLERGDFLSEEWRERIANTSVIFV-NNFAFGPEVDHQLKERFANMKEGGRIVSSKPF  268 (328)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             ceEEEECcccccccccccCcceEEEE-cceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence            6999999999887655444  56665 456677777 9999999999999999886543

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.67  E-value=2e-16  Score=125.36  Aligned_cols=108  Identities=20%  Similarity=0.282  Sum_probs=91.9

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      .+...+++.+.+.++.+|||||||+|..+..+++ ...+|+++|+++.+++.|++++...   .++.++.+|......+.
T Consensus        57 ~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~-l~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~~  132 (224)
T d1vbfa_          57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAE-IVDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEEE  132 (224)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHH-HSSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGGG
T ss_pred             hhHHHHHHHhhhcccceEEEecCCCCHHHHHHHH-HhcccccccccHHHHHHHHHHHhcc---cccccccCchhhcchhh
Confidence            3455688999999999999999999999998888 5789999999999999999887643   57999999987643346


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEE
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLT  191 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~  191 (298)
                      ++||+|++..++.++++     .+.+.|+|||+|++.
T Consensus       133 ~pfD~Iiv~~a~~~ip~-----~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         133 KPYDRVVVWATAPTLLC-----KPYEQLKEGGIMILP  164 (224)
T ss_dssp             CCEEEEEESSBBSSCCH-----HHHHTEEEEEEEEEE
T ss_pred             hhHHHHHhhcchhhhhH-----HHHHhcCCCCEEEEE
Confidence            78999999999988876     456789999999884

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.67  E-value=2.7e-16  Score=123.11  Aligned_cols=102  Identities=22%  Similarity=0.189  Sum_probs=90.2

Q ss_pred             CeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCCeeEEEecccc
Q psy2408          90 QRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDSFDGGWFFESI  166 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~l  166 (298)
                      -.|||||||+|..+..+|+. ++..++|+|+++.++..+.+.+...++. |+.++++|+..+.  ++++++|.|++.+..
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~  109 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLNFSD  109 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-CchhcccchhhhhcccCchhhhcccccccc
Confidence            37999999999999999987 4789999999999999999999999984 7999999998763  678999999988877


Q ss_pred             cccCh---------HHHHHHHhhcccCCcEEEEEe
Q psy2408         167 FHMNH---------SAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       167 ~~~~~---------~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .+...         +.+++.++|+|||||.|++.+
T Consensus       110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            66553         279999999999999998864

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=4.3e-16  Score=131.69  Aligned_cols=109  Identities=21%  Similarity=0.272  Sum_probs=90.7

Q ss_pred             HHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeE
Q psy2408          80 MINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDG  159 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  159 (298)
                      +.......++.+|||||||+|.++..+++....+|+++|.|+ ++..|++.....++..++.++++|+.++++++++||+
T Consensus        30 I~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~  108 (328)
T d1g6q1_          30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDI  108 (328)
T ss_dssp             HHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEE
T ss_pred             HHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeE
Confidence            333333347899999999999999988884335899999996 7789999999999988999999999999988899999


Q ss_pred             EEecccccccCh---H-HHHHHHhhcccCCcEEE
Q psy2408         160 GWFFESIFHMNH---S-AALNEARRVLKSGSILT  189 (298)
Q Consensus       160 V~~~~~l~~~~~---~-~~l~~~~r~LkpgG~l~  189 (298)
                      |++..+.+++..   . .++..+.++|||||.++
T Consensus       109 i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            998766655543   4 78888999999999886

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.65  E-value=6.2e-16  Score=121.71  Aligned_cols=113  Identities=17%  Similarity=0.182  Sum_probs=98.4

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ..+...+++.+.+.++.+|||||||+|..+..+++..+.+|+++|.++.+++.+++++...++ .|+.++++|......+
T Consensus        64 P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~~  142 (215)
T d1jg1a_          64 PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPP  142 (215)
T ss_dssp             HHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGG
T ss_pred             hhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCcc
Confidence            345677888899999999999999999999999986687899999999999999999999887 4799999999875445


Q ss_pred             CCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         154 NDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .++||.|++..++.++++.     +...|+|||++++..
T Consensus       143 ~~pfD~Iiv~~a~~~ip~~-----l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         143 KAPYDVIIVTAGAPKIPEP-----LIEQLKIGGKLIIPV  176 (215)
T ss_dssp             GCCEEEEEECSBBSSCCHH-----HHHTEEEEEEEEEEE
T ss_pred             cCcceeEEeecccccCCHH-----HHHhcCCCCEEEEEE
Confidence            7899999999999888773     556799999998753

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=8.5e-16  Score=129.16  Aligned_cols=103  Identities=21%  Similarity=0.224  Sum_probs=87.7

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecc
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE  164 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~  164 (298)
                      +.++++|||||||+|.++..+++ .| .+|+++|.|+. ...+++.+...++.+++.++++|+.+++++.++||+|++..
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~-~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~  108 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAK-AGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW  108 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHH-TTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred             cCCcCEEEEEecCCcHHHHHHHH-hCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeee
Confidence            34789999999999999998888 55 57999999975 56777778888888899999999999988889999999876


Q ss_pred             cccccCh---H-HHHHHHhhcccCCcEEEE
Q psy2408         165 SIFHMNH---S-AALNEARRVLKSGSILTL  190 (298)
Q Consensus       165 ~l~~~~~---~-~~l~~~~r~LkpgG~l~i  190 (298)
                      +.+++..   . .++..+.++|+|||.++-
T Consensus       109 ~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         109 MGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             CBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            6665543   3 889999999999999873

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.6e-15  Score=125.94  Aligned_cols=114  Identities=19%  Similarity=0.254  Sum_probs=91.2

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND  155 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  155 (298)
                      ..+.+.+.....++.+|||||||+|.++..+++....+|+++|.|+.+.. +++.....+..+++.++++|+.+++++.+
T Consensus        23 y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~~  101 (311)
T d2fyta1          23 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVE  101 (311)
T ss_dssp             HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSCS
T ss_pred             HHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCccc
Confidence            34445555555688999999999999999999843358999999998764 66666777777899999999999988889


Q ss_pred             CeeEEEecccccccCh---H-HHHHHHhhcccCCcEEEE
Q psy2408         156 SFDGGWFFESIFHMNH---S-AALNEARRVLKSGSILTL  190 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~---~-~~l~~~~r~LkpgG~l~i  190 (298)
                      +||+|++....++...   . .++....++|+|||+++-
T Consensus       102 ~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         102 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             cceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            9999998766655543   2 777778899999999874

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.61  E-value=3.8e-15  Score=116.50  Aligned_cols=102  Identities=20%  Similarity=0.239  Sum_probs=88.1

Q ss_pred             CeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--CCCCCeeEEEecccc
Q psy2408          90 QRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--FDNDSFDGGWFFESI  166 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~V~~~~~l  166 (298)
                      -.|||||||+|..+..+|+. +...++|+|+++.++..|..++...+++ |+.++.+|+..+.  ++++++|.|++.+.-
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd  111 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYFEDGEIDRLYLNFSD  111 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhhhccCCceehhcccccc
Confidence            37999999999999999997 4789999999999999999999998884 7999999998863  678899999877665


Q ss_pred             cccCh---------HHHHHHHhhcccCCcEEEEEe
Q psy2408         167 FHMNH---------SAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       167 ~~~~~---------~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      -+...         +.+|+.+.++|+|||.|.+.+
T Consensus       112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            44332         289999999999999998864

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=9.1e-15  Score=119.02  Aligned_cols=144  Identities=16%  Similarity=0.217  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      .+.+++..+.... ..+.+|||+|||+|..+..++... .++|+++|+|+.+++.|++++...++ .+++++++|..+ +
T Consensus        94 TE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~~-~  170 (274)
T d2b3ta1          94 TECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFS-A  170 (274)
T ss_dssp             HHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTG-G
T ss_pred             hhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-ccceeeeccccc-c
Confidence            4556666777665 456799999999999999998874 68999999999999999999999998 469999999877 4


Q ss_pred             CCCCCeeEEEeccc-------------ccccC-----------hH--HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHH
Q psy2408         152 FDNDSFDGGWFFES-------------IFHMN-----------HS--AALNEARRVLKSGSILTLTDLPLLSVSKNDNKF  205 (298)
Q Consensus       152 ~~~~~fD~V~~~~~-------------l~~~~-----------~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~  205 (298)
                      +++++||+|+++-.             +.|-+           +.  .++.++.+.|+|||.+++. ...          
T Consensus       171 ~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE-ig~----------  239 (274)
T d2b3ta1         171 LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE-HGW----------  239 (274)
T ss_dssp             GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE-CCS----------
T ss_pred             cCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE-ECc----------
Confidence            55679999999622             22211           11  6888999999999998883 321          


Q ss_pred             HHHHHhhcccCCCCcchHHHHHHhCCCcEE-EEEeCCC
Q psy2408         206 KEYVKKNIHSNFILVEHYPDLLNKSGFELI-KIDDITS  242 (298)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~-~~~~~~~  242 (298)
                                  .....+.+++++.||..+ ...++..
T Consensus       240 ------------~q~~~v~~~l~~~gf~~i~~~kDl~g  265 (274)
T d2b3ta1         240 ------------QQGEAVRQAFILAGYHDVETCRDYGD  265 (274)
T ss_dssp             ------------SCHHHHHHHHHHTTCTTCCEEECTTS
T ss_pred             ------------hHHHHHHHHHHHCCCCeEEEEECCCC
Confidence                        112467788899999744 3455443

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.60  E-value=1e-14  Score=117.35  Aligned_cols=145  Identities=12%  Similarity=0.168  Sum_probs=109.9

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      ....+|||||||+|..+..+++++ +.+++++|+ ++.+       +..+..++++++.+|+.+ +.+  .+|++++..+
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi-------~~~~~~~rv~~~~gD~f~-~~p--~aD~~~l~~v  147 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVV-------ENLSGSNNLTYVGGDMFT-SIP--NADAVLLKYI  147 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-------TTCCCBTTEEEEECCTTT-CCC--CCSEEEEESC
T ss_pred             cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHH-------HhCcccCceEEEecCccc-CCC--CCcEEEEEee
Confidence            344689999999999999999884 689999998 3333       334556789999999986 333  5799999999


Q ss_pred             ccccChH---HHHHHHhhcccCC---cEEEEEeCCCCCCCCChhHH--HHHH---HhhcccCCCCcchHHHHHHhCCCcE
Q psy2408         166 IFHMNHS---AALNEARRVLKSG---SILTLTDLPLLSVSKNDNKF--KEYV---KKNIHSNFILVEHYPDLLNKSGFEL  234 (298)
Q Consensus       166 l~~~~~~---~~l~~~~r~Lkpg---G~l~i~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~l~~~Gf~~  234 (298)
                      +|++++.   .+|+++++.|+||   |+++|.+.............  ....   -......-.+.++|.++|+++||++
T Consensus       148 LHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~  227 (244)
T d1fp2a2         148 LHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQH  227 (244)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCE
T ss_pred             cccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCce
Confidence            9999998   9999999999998   88999887665443311111  1111   1122345678899999999999999


Q ss_pred             EEEEeCCC
Q psy2408         235 IKIDDITS  242 (298)
Q Consensus       235 ~~~~~~~~  242 (298)
                      +++...+.
T Consensus       228 ~~i~~~~~  235 (244)
T d1fp2a2         228 YKISPLTG  235 (244)
T ss_dssp             EEEEEEET
T ss_pred             EEEEECCC
Confidence            98876543

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=1.1e-14  Score=118.12  Aligned_cols=135  Identities=13%  Similarity=0.160  Sum_probs=105.0

Q ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCee
Q psy2408          79 IMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFD  158 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  158 (298)
                      .+....  .+|.+|||+|||+|.++..+++...++|+++|+|+.+++.+++++..+++.+++.++++|+.+++ +.+.||
T Consensus       100 ri~~~~--~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D  176 (260)
T d2frna1         100 RMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIAD  176 (260)
T ss_dssp             HHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEE
T ss_pred             HHHhhc--CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-cCCCCC
Confidence            445544  68999999999999999999986557999999999999999999999999989999999999875 357899


Q ss_pred             EEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHHHHhCCCcEEE
Q psy2408         159 GGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDLLNKSGFELIK  236 (298)
Q Consensus       159 ~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  236 (298)
                      .|++...    +.. .++..+.++|+|||++.+.+........                -...+.+...+...||.+..
T Consensus       177 ~Ii~~~p----~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~----------------~~~~e~~~~~~~~~g~~v~~  235 (260)
T d2frna1         177 RILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMP----------------REPFETFKRITKEYGYDVEK  235 (260)
T ss_dssp             EEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTT----------------TTTHHHHHHHHHHTTCEEEE
T ss_pred             EEEECCC----CchHHHHHHHHhhcCCCCEEEEEeccccccch----------------hhHHHHHHHHHHHcCCceEE
Confidence            9986421    223 7888899999999999876554222111                01224456777889997753

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.59  E-value=2.1e-14  Score=115.79  Aligned_cols=156  Identities=11%  Similarity=0.078  Sum_probs=112.9

Q ss_pred             HHHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          76 LSRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        76 ~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ....++..... ....+|||||||+|.++..+++++ +.+++++|+.+. +       +.....++++++.+|+.+ +.|
T Consensus        68 ~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-------~~~~~~~r~~~~~~d~~~-~~P  138 (243)
T d1kyza2          68 TMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-------EDAPSYPGVEHVGGDMFV-SIP  138 (243)
T ss_dssp             HHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-------TTCCCCTTEEEEECCTTT-CCC
T ss_pred             HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-------hhcccCCceEEecccccc-cCC
Confidence            44556666654 335789999999999999999984 789999999542 2       233445789999999976 444


Q ss_pred             CCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChh-HHH-HHHHh-----hcccCCCCcchH
Q psy2408         154 NDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDN-KFK-EYVKK-----NIHSNFILVEHY  223 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-~~~-~~~~~-----~~~~~~~~~~~~  223 (298)
                      .  .|++++..+++..++.   .+|+++++.|+|||+++|.+........... ... .....     .....-.+.++|
T Consensus       139 ~--ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~  216 (243)
T d1kyza2         139 K--ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEF  216 (243)
T ss_dssp             C--CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHH
T ss_pred             C--cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHH
Confidence            3  5778889999999887   9999999999999999999876544322111 111 11111     112345678999


Q ss_pred             HHHHHhCCCcEEEEEeCCC
Q psy2408         224 PDLLNKSGFELIKIDDITS  242 (298)
Q Consensus       224 ~~~l~~~Gf~~~~~~~~~~  242 (298)
                      +++|+++||+.+++.....
T Consensus       217 ~~ll~~AGf~~vkv~~~~~  235 (243)
T d1kyza2         217 EDLAKGAGFQGFKVHCNAF  235 (243)
T ss_dssp             HHHHHHHCCSCEEEEEEET
T ss_pred             HHHHHHcCCCcEEEEEeCC
Confidence            9999999999998765433

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=6.6e-15  Score=125.97  Aligned_cols=121  Identities=16%  Similarity=0.170  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC-------C-CCceEE-
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEG-------L-LDKVNF-  142 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~-------~-~~~i~~-  142 (298)
                      .......+++.+++.++++|||||||+|..+..+|...++ +++|||+|+.+++.|+++....+       . ...+.+ 
T Consensus       201 ~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~  280 (406)
T d1u2za_         201 LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS  280 (406)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred             CHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceee
Confidence            3566888999999999999999999999999999987765 89999999999999999876532       1 112233 


Q ss_pred             EECCCCCCCCC---CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         143 LHGDALNLPFD---NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       143 ~~~d~~~~~~~---~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ..+++...+..   -..+|+|++.. +.+.++. ..|.++.+.|||||+++..+..
T Consensus       281 ~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~  335 (406)
T d1u2za_         281 LKKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKSL  335 (406)
T ss_dssp             ESSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             eeechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEeccc
Confidence            34444432211   13567777654 5566666 9999999999999999887644

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=5.9e-15  Score=116.94  Aligned_cols=113  Identities=15%  Similarity=0.154  Sum_probs=91.2

Q ss_pred             HHHHHHHHhC--CCCCCCeEEEeCCCCCHHHHHHHHhc-------CCeEEEEeCCHHHHHHHHHHHHhcCC----CCceE
Q psy2408          75 KLSRIMINKT--SITKGQRFIDIGCGFGLSGIRLAKAK-------GCRVDGITISKFQQESAMKTAKAEGL----LDKVN  141 (298)
Q Consensus        75 ~~~~~l~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~-------~~~v~~vD~s~~~l~~a~~~~~~~~~----~~~i~  141 (298)
                      .+...+++.+  .+.++.+|||||||+|..+..+++..       +.+|+++|.++++++.+++++...+.    -.++.
T Consensus        65 ~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~  144 (223)
T d1r18a_          65 HMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLL  144 (223)
T ss_dssp             HHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred             hhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEE
Confidence            3455677776  67899999999999999999888753       24899999999999999887654321    14799


Q ss_pred             EEECCCCCCCCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         142 FLHGDALNLPFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       142 ~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ++++|......+.++||+|++..++.++++     .+.+.|+|||++++..
T Consensus       145 ~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~-----~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         145 IVEGDGRKGYPPNAPYNAIHVGAAAPDTPT-----ELINQLASGGRLIVPV  190 (223)
T ss_dssp             EEESCGGGCCGGGCSEEEEEECSCBSSCCH-----HHHHTEEEEEEEEEEE
T ss_pred             EEecccccccccccceeeEEEEeechhchH-----HHHHhcCCCcEEEEEE
Confidence            999999876555689999999999988876     4678999999998753

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.45  E-value=1.5e-13  Score=115.33  Aligned_cols=108  Identities=25%  Similarity=0.237  Sum_probs=88.1

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC----CCCCCCeeEEEe
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL----PFDNDSFDGGWF  162 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V~~  162 (298)
                      .++.+|||+|||+|.++..++.....+|+++|+|+.+++.+++++..+|+.++++++++|+.+.    +....+||+|++
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~  223 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  223 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence            6789999999999999999988433489999999999999999999999988899999998653    234578999997


Q ss_pred             cccccccC---------hH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         163 FESIFHMN---------HS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       163 ~~~l~~~~---------~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .-......         +. .++..+.++|+|||.|+.+...
T Consensus       224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            43322111         12 6888899999999999987654

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=2.2e-13  Score=105.08  Aligned_cols=116  Identities=17%  Similarity=0.219  Sum_probs=95.7

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----  150 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----  150 (298)
                      .+.+++.+.+.++..+||++||+|..+..+++. .+++|+|+|.++.|++.|++++...+  .++.++++++.++     
T Consensus        12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~   89 (192)
T d1m6ya2          12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLK   89 (192)
T ss_dssp             HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHH
Confidence            566778888899999999999999999999987 46899999999999999999987654  5799999998774     


Q ss_pred             CCCCCCeeEEEeccccc---------ccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         151 PFDNDSFDGGWFFESIF---------HMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~---------~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .+..++||.|+.-..+.         .+... ..|..+.++|+|||++++.++.
T Consensus        90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~  143 (192)
T d1m6ya2          90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH  143 (192)
T ss_dssp             HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred             HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence            24468999998754442         12233 8899999999999999988765

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.42  E-value=1.6e-13  Score=102.40  Aligned_cols=105  Identities=12%  Similarity=0.054  Sum_probs=83.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-CCCCCCeeEEEecccc
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-PFDNDSFDGGWFFESI  166 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~l  166 (298)
                      .|.+|||+|||+|.++..++.+...+|+++|.++.+++.+++.+...++.++++++++|+.++ +...++||+|++.-..
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy   93 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY   93 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence            688999999999999998887433599999999999999999999999988899999998764 3446899999885332


Q ss_pred             cccChH-HHHHHHh--hcccCCcEEEEEeC
Q psy2408         167 FHMNHS-AALNEAR--RVLKSGSILTLTDL  193 (298)
Q Consensus       167 ~~~~~~-~~l~~~~--r~LkpgG~l~i~~~  193 (298)
                      . .... ..+..+.  ++|+|+|.+++...
T Consensus        94 ~-~~~~~~~l~~i~~~~~L~~~g~iiiE~~  122 (152)
T d2esra1          94 A-KETIVATIEALAAKNLLSEQVMVVCETD  122 (152)
T ss_dssp             H-HHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             c-cchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence            1 1111 5555553  57999999988643

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=5.4e-13  Score=105.01  Aligned_cols=124  Identities=20%  Similarity=0.304  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC
Q psy2408          70 AQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA  147 (298)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~  147 (298)
                      ....-++...++...   .+.+|||+|||+|..+..+++..  +.+++++|+++.+++.|+..+...|+.++++++.+|.
T Consensus        41 ~~~~G~lL~~lv~~~---kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~  117 (214)
T d2cl5a1          41 GDAKGQIMDAVIREY---SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGAS  117 (214)
T ss_dssp             HHHHHHHHHHHHHHH---CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             CHHHHHHHHHHHHhh---CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccc
Confidence            455566777777765   34699999999999999999863  5799999999999999999999999988999999998


Q ss_pred             CCC-C-----CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCC
Q psy2408         148 LNL-P-----FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLL  196 (298)
Q Consensus       148 ~~~-~-----~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~  196 (298)
                      .+. +     ...++||+|+.-+.-........+.+..++|+|||.+++.+..+.
T Consensus       118 ~e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~  172 (214)
T d2cl5a1         118 QDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVP  172 (214)
T ss_dssp             HHHGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEESCCCCC
T ss_pred             cccccchhhcccccccceeeecccccccccHHHHHHHhCccCCCcEEEEeCcCCC
Confidence            653 1     345789999875321111111557788899999999888776654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.39  E-value=2e-13  Score=114.08  Aligned_cols=106  Identities=24%  Similarity=0.216  Sum_probs=86.0

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC----CCCCCCeeEEEe
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL----PFDNDSFDGGWF  162 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~V~~  162 (298)
                      .+|.+|||++||+|.++..++. .+.+|+++|+|+.+++.+++++..+++. ++.++++|+.++    +...++||+|++
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            3688999999999999998886 5679999999999999999999999984 699999998663    334578999997


Q ss_pred             cccccc---------cChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         163 FESIFH---------MNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       163 ~~~l~~---------~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .-.-..         ..+. .++..+.++|+|||.|+.+..+
T Consensus       222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            532211         1122 6888999999999999887654

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.38  E-value=9.2e-13  Score=108.37  Aligned_cols=107  Identities=14%  Similarity=0.161  Sum_probs=84.7

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEECCCCCC----CCCCCCeeEEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD-KVNFLHGDALNL----PFDNDSFDGGW  161 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-~i~~~~~d~~~~----~~~~~~fD~V~  161 (298)
                      .++.+|||++||+|.++..++. .|++|++||.|+.+++.|++++..+++.. ++++++.|+.++    ....+.||+|+
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~-~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii  209 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAA-AGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  209 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             cCCCeEEEecCCCcHHHHHHHh-CCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence            4678999999999999999887 68899999999999999999999888765 689999998764    12347899999


Q ss_pred             ecc---------cccccChH--HHHHHHhhcccCCcEEEEEeCC
Q psy2408         162 FFE---------SIFHMNHS--AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       162 ~~~---------~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +.-         ....+.+.  .++..+.++|+|||.+++.+.+
T Consensus       210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~  253 (309)
T d2igta1         210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  253 (309)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence            731         12222333  6777888999999986665543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.35  E-value=3.4e-12  Score=106.18  Aligned_cols=145  Identities=10%  Similarity=0.153  Sum_probs=102.8

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCC----
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGDALNL----  150 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d~~~~----  150 (298)
                      ...++..+  .+|.+|||++||+|.++..++. .|+ +|+++|+|+.+++.++++++.+++. .+++++++|+.+.    
T Consensus       135 r~~l~~~~--~~g~~VLdlf~~~G~~sl~aa~-~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~  211 (317)
T d2b78a2         135 RNELINGS--AAGKTVLNLFSYTAAFSVAAAM-GGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYA  211 (317)
T ss_dssp             HHHHHHTT--TBTCEEEEETCTTTHHHHHHHH-TTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHH
T ss_pred             HHHHHHHh--hCCCceeecCCCCcHHHHHHHh-CCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHH
Confidence            34444444  5789999999999999988877 454 7999999999999999999999885 5799999998653    


Q ss_pred             CCCCCCeeEEEeccc--------cccc-ChH-HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCc
Q psy2408         151 PFDNDSFDGGWFFES--------IFHM-NHS-AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILV  220 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~--------l~~~-~~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (298)
                      ....++||+|++.-.        +... .+. .+++.+.++|+|||.|+++.....  .. ...+.              
T Consensus       212 ~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~--~~-~~~f~--------------  274 (317)
T d2b78a2         212 RRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN--MT-VSQFK--------------  274 (317)
T ss_dssp             HHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT--SC-HHHHH--------------
T ss_pred             HhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc--CC-HHHHH--------------
Confidence            123468999997421        1111 223 789999999999999998765421  11 11111              


Q ss_pred             chHHHHHHhCCCcEEEEEeCC
Q psy2408         221 EHYPDLLNKSGFELIKIDDIT  241 (298)
Q Consensus       221 ~~~~~~l~~~Gf~~~~~~~~~  241 (298)
                      ..+...+..+|..+......+
T Consensus       275 ~~v~~a~~~~~~~~~~~~~~~  295 (317)
T d2b78a2         275 KQIEKGFGKQKHTYLDLQQLP  295 (317)
T ss_dssp             HHHHHHHTTCCCEEEEEECCC
T ss_pred             HHHHHHHHHcCCeEEEeccCC
Confidence            123445567788777665443

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.3e-11  Score=96.24  Aligned_cols=83  Identities=18%  Similarity=0.098  Sum_probs=68.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------CCCCCCeeEE
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------PFDNDSFDGG  160 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~~fD~V  160 (298)
                      +..++||+|||+|..+..++.+ ++.+++|+|+|+.+++.|+++++..++.+++.++..+....      ...+++||+|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            3469999999999999999887 58899999999999999999999999999999988765432      1235689999


Q ss_pred             EecccccccC
Q psy2408         161 WFFESIFHMN  170 (298)
Q Consensus       161 ~~~~~l~~~~  170 (298)
                      +|+--.....
T Consensus       141 vsNPPY~~~~  150 (250)
T d2h00a1         141 MCNPPFFANQ  150 (250)
T ss_dssp             EECCCCC---
T ss_pred             EecCcccccc
Confidence            9987766443

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.31  E-value=3.1e-12  Score=97.12  Aligned_cols=116  Identities=16%  Similarity=0.198  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC--C
Q psy2408          73 SDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN--L  150 (298)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~--~  150 (298)
                      .+.+...+...+  .++.+|||+|||+|.++..++. .|++++++|.|+.+++.++++++..++..++.....|...  .
T Consensus        28 ~e~lf~~l~~~~--~~g~~vLDl~~G~G~~~i~a~~-~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~  104 (171)
T d1ws6a1          28 RKALFDYLRLRY--PRRGRFLDPFAGSGAVGLEAAS-EGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEA  104 (171)
T ss_dssp             HHHHHHHHHHHC--TTCCEEEEETCSSCHHHHHHHH-TTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHH
T ss_pred             HHHHHHHhhccc--cCCCeEEEeccccchhhhhhhh-ccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccc
Confidence            334444444443  5788999999999999998877 5889999999999999999999998887655444443211  1


Q ss_pred             CCCCCCeeEEEecccccccChHHHHHHH--hhcccCCcEEEEEe
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHSAALNEA--RRVLKSGSILTLTD  192 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~--~r~LkpgG~l~i~~  192 (298)
                      ..+.++||+|++.-... ......+..+  ..+|+|||.+++..
T Consensus       105 ~~~~~~fD~If~DPPY~-~~~~~~l~~l~~~~ll~~~g~ivie~  147 (171)
T d1ws6a1         105 KAQGERFTVAFMAPPYA-MDLAALFGELLASGLVEAGGLYVLQH  147 (171)
T ss_dssp             HHTTCCEEEEEECCCTT-SCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred             cccCCccceeEEccccc-cCHHHHHHHHHHcCCcCCCeEEEEEe
Confidence            23457899999853322 1211333333  35899999988754

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.31  E-value=9.3e-12  Score=100.75  Aligned_cols=118  Identities=21%  Similarity=0.189  Sum_probs=87.5

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-CC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-PF  152 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~~  152 (298)
                      +.+++.+++.....+..+|||+|||+|..+..+++...++|+++|+|+.+++.|+++++..++..++.+...|..+. +.
T Consensus        96 E~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~  175 (271)
T d1nv8a_          96 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE  175 (271)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG
T ss_pred             hhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccccc
Confidence            44555555544334456899999999999999988678899999999999999999999999988899999998774 22


Q ss_pred             CCCCeeEEEeccc-----------cccc--------ChH-HHHHH-HhhcccCCcEEEEE
Q psy2408         153 DNDSFDGGWFFES-----------IFHM--------NHS-AALNE-ARRVLKSGSILTLT  191 (298)
Q Consensus       153 ~~~~fD~V~~~~~-----------l~~~--------~~~-~~l~~-~~r~LkpgG~l~i~  191 (298)
                      ..++||+|+++--           +.|=        .+. .++++ +.+.|+|||++++-
T Consensus       176 ~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~E  235 (271)
T d1nv8a_         176 KFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  235 (271)
T ss_dssp             GTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             ccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEE
Confidence            3478999998511           1111        111 33333 45789999987774

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.1e-11  Score=97.57  Aligned_cols=120  Identities=18%  Similarity=0.147  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC
Q psy2408          71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL  148 (298)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~  148 (298)
                      ..+-++...++...   ...+|||||||+|..+..+++..  +.+++++|.+++..+.|++.+...|+.++++++.+|+.
T Consensus        45 ~~~g~lL~~L~~~~---~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~  121 (219)
T d2avda1          45 CEQAQLLANLARLI---QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL  121 (219)
T ss_dssp             HHHHHHHHHHHHHT---TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred             HHHHHHHHHHHHcc---CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehh
Confidence            34556666666655   45699999999999999999874  57999999999999999999999999999999999975


Q ss_pred             CC------CCCCCCeeEEEecccccccCh-H-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         149 NL------PFDNDSFDGGWFFESIFHMNH-S-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       149 ~~------~~~~~~fD~V~~~~~l~~~~~-~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      +.      ....++||+|+..+    -++ . ..+..+.+.|+|||.+++.+..+.+
T Consensus       122 e~l~~~~~~~~~~~fD~ifiD~----dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G  174 (219)
T d2avda1         122 ETLDELLAAGEAGTFDVAVVDA----DKENCSAYYERCLQLLRPGGILAVLRVLWRG  174 (219)
T ss_dssp             HHHHHHHHTTCTTCEEEEEECS----CSTTHHHHHHHHHHHEEEEEEEEEECCSGGG
T ss_pred             hcchhhhhhcccCCccEEEEeC----CHHHHHHHHHHHHHHhcCCcEEEEeCCcccC
Confidence            52      12357899998743    223 3 8888999999999999998876544

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.24  E-value=5.4e-11  Score=91.97  Aligned_cols=105  Identities=18%  Similarity=0.083  Sum_probs=76.3

Q ss_pred             CCCCeEEEeCCCCCHHH----HHHHHhc-----CCeEEEEeCCHHHHHHHHHHH------------------HhcCC---
Q psy2408          87 TKGQRFIDIGCGFGLSG----IRLAKAK-----GCRVDGITISKFQQESAMKTA------------------KAEGL---  136 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~----~~l~~~~-----~~~v~~vD~s~~~l~~a~~~~------------------~~~~~---  136 (298)
                      .+..+|+++|||+|.-.    +.+.+..     ..+++|.|+|+.+++.|+...                  ...+.   
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            35579999999999854    3333321     137999999999999998421                  11110   


Q ss_pred             ---------CCceEEEECCCCCC-CCCCCCeeEEEecccccccChH---HHHHHHhhcccCCcEEEEE
Q psy2408         137 ---------LDKVNFLHGDALNL-PFDNDSFDGGWFFESIFHMNHS---AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       137 ---------~~~i~~~~~d~~~~-~~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~  191 (298)
                               ...+.+...+.... +.+.+.||+|+|..+|.++.++   .+++++++.|+|||+|++.
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                     01344555555543 2345789999999999999988   9999999999999998885

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.23  E-value=3.2e-11  Score=92.88  Aligned_cols=70  Identities=21%  Similarity=0.261  Sum_probs=58.9

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      .|.+|||+|||+|.++..++.....+|+++|+++.+++.|++++      .++.++++|+.+++   ++||+|+++-.+
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~l~---~~fD~Vi~NPPf  117 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC------GGVNFMVADVSEIS---GKYDTWIMNPPF  117 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC------TTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc------ccccEEEEehhhcC---CcceEEEeCccc
Confidence            68899999999999998877743357999999999999999875      35889999998864   689999987443

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.22  E-value=1.7e-11  Score=93.82  Aligned_cols=121  Identities=13%  Similarity=0.029  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCC
Q psy2408          70 AQGSDKLSRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDAL  148 (298)
Q Consensus        70 ~~~~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~  148 (298)
                      ++...++.+.+.+.+.. ..+.+|||++||+|.++...+.+...+|++||.++.+++.+++++...+...++++++.|+.
T Consensus        22 RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~  101 (182)
T d2fhpa1          22 RPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN  101 (182)
T ss_dssp             CCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred             CcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccch
Confidence            33445666666666542 46899999999999999999885334799999999999999999998888778999999986


Q ss_pred             CC----CCCCCCeeEEEecccccccChH-HHHHHHh--hcccCCcEEEEE
Q psy2408         149 NL----PFDNDSFDGGWFFESIFHMNHS-AALNEAR--RVLKSGSILTLT  191 (298)
Q Consensus       149 ~~----~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~--r~LkpgG~l~i~  191 (298)
                      +.    .-...+||+|++.--.. .... ..+..+.  .+|+|+|.+++.
T Consensus       102 ~~l~~~~~~~~~fDlIflDPPY~-~~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1         102 RALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             hhhhhhcccCCCcceEEechhhh-hhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            53    11346899998754432 2333 6666664  479999988774

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.22  E-value=7.3e-11  Score=91.73  Aligned_cols=82  Identities=15%  Similarity=0.082  Sum_probs=66.5

Q ss_pred             HhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEE
Q psy2408          82 NKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGW  161 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~  161 (298)
                      ...+.-.|.+|||+|||+|.++..++.....+|+|+|+|+.+++.+++++...+.  +..++..|+..+   +++||+|+
T Consensus        40 ~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~---~~~fD~Vi  114 (201)
T d1wy7a1          40 YSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF---NSRVDIVI  114 (201)
T ss_dssp             HHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC---CCCCSEEE
T ss_pred             HhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhh---CCcCcEEE
Confidence            3344346889999999999999988774335899999999999999999887764  578999998776   36899999


Q ss_pred             ecccccc
Q psy2408         162 FFESIFH  168 (298)
Q Consensus       162 ~~~~l~~  168 (298)
                      ++-....
T Consensus       115 ~nPP~~~  121 (201)
T d1wy7a1         115 MNPPFGS  121 (201)
T ss_dssp             ECCCCSS
T ss_pred             EcCcccc
Confidence            8766543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=3.1e-11  Score=92.56  Aligned_cols=122  Identities=9%  Similarity=0.108  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC
Q psy2408          69 FAQGSDKLSRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA  147 (298)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~  147 (298)
                      .++...++.+.+...+.. -.+.+|||++||+|.++...+.+...+|+.||.++..++.+++++...+. .++.++..|+
T Consensus        23 ~RPt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~  101 (183)
T d2fpoa1          23 LRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNA  101 (183)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCH
T ss_pred             cCcCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeeecc
Confidence            344445555555544431 25789999999999999998885334899999999999999999988776 4689999998


Q ss_pred             CCC-CCCCCCeeEEEecccccccChH-HHHHHHh--hcccCCcEEEEEe
Q psy2408         148 LNL-PFDNDSFDGGWFFESIFHMNHS-AALNEAR--RVLKSGSILTLTD  192 (298)
Q Consensus       148 ~~~-~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~--r~LkpgG~l~i~~  192 (298)
                      .++ .....+||+|++.-.... ... ..+..+.  .+|+++|.+++..
T Consensus       102 ~~~l~~~~~~fDlIf~DPPY~~-~~~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         102 MSFLAQKGTPHNIVFVDPPFRR-GLLEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             HHHHSSCCCCEEEEEECCSSST-TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             cccccccccccCEEEEcCcccc-chHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            764 335678999998654332 222 5566555  4799999988853

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.14  E-value=5.7e-11  Score=93.70  Aligned_cols=120  Identities=17%  Similarity=0.231  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN  149 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~  149 (298)
                      .+-++...++...   ...+|||+|+++|..+..+++..  +++++.+|.+++..+.|++.+...|+.++++++.+++.+
T Consensus        46 ~~g~~L~~L~~~~---~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~  122 (227)
T d1susa1          46 DEGQFLSMLLKLI---NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP  122 (227)
T ss_dssp             HHHHHHHHHHHHH---TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             HHHHHHHHHHHhc---CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHH
Confidence            3455666666665   45699999999999999999864  579999999999999999999999999999999999865


Q ss_pred             C-C-C-----CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         150 L-P-F-----DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       150 ~-~-~-----~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      . + +     ..++||+|+.-.-  + ... ..+..+.+.|+|||.+++.+..+.+
T Consensus       123 ~L~~l~~~~~~~~~fD~iFiDa~--k-~~y~~~~e~~~~ll~~gGiii~DNvl~~G  175 (227)
T d1susa1         123 VLDEMIKDEKNHGSYDFIFVDAD--K-DNYLNYHKRLIDLVKVGGVIGYDNTLWNG  175 (227)
T ss_dssp             HHHHHHHCGGGTTCBSEEEECSC--S-TTHHHHHHHHHHHBCTTCCEEEETTTGGG
T ss_pred             HHHHHHhccccCCceeEEEeccc--h-hhhHHHHHHHHhhcCCCcEEEEccCCCCC
Confidence            3 1 1     2468999987431  1 223 8899999999999999998776543

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=99.11  E-value=2e-10  Score=91.10  Aligned_cols=85  Identities=15%  Similarity=0.198  Sum_probs=72.0

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ....+.+++.+.+.++++|||||||+|.++..|++ .+.+|+++|+++.+++.+++++...   +++.++++|+.+++++
T Consensus         7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~-~~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~~   82 (235)
T d1qama_           7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQ-RCNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFP   82 (235)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHH-HSSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCC
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHh-CcCceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhcccc
Confidence            46788899999999999999999999999999998 5789999999999999999887543   5799999999998776


Q ss_pred             CCCeeEEEe
Q psy2408         154 NDSFDGGWF  162 (298)
Q Consensus       154 ~~~fD~V~~  162 (298)
                      ......|++
T Consensus        83 ~~~~~~vv~   91 (235)
T d1qama_          83 KNQSYKIFG   91 (235)
T ss_dssp             SSCCCEEEE
T ss_pred             ccccceeee
Confidence            544444544

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=3.3e-09  Score=82.04  Aligned_cols=100  Identities=17%  Similarity=0.189  Sum_probs=85.6

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      -++.+|+|+|||.|.-+..++-. +..+++.+|.+..-+...++.....++. ++++++..+.++. +..+||+|++..+
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~-~~~~fD~V~sRA~  141 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP-SEPPFDGVISRAF  141 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC-CCSCEEEEECSCS
T ss_pred             hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhc-cccccceehhhhh
Confidence            35679999999999999999975 5689999999999999999999998884 7999999999875 3568999987654


Q ss_pred             ccccChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         166 IFHMNHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       166 l~~~~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                          .+. .++.-+...++++|.+++.-
T Consensus       142 ----~~~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         142 ----ASLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             ----SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ----cCHHHHHHHHHHhcCCCcEEEEEC
Confidence                345 88888999999999988864

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=1.3e-08  Score=86.14  Aligned_cols=145  Identities=17%  Similarity=0.250  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC
Q psy2408          71 QGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL  150 (298)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~  150 (298)
                      ...+.+.+.+++.+.+.++.+|||+-||+|.++..|++ ...+|+|+|.++.+++.|++++..+++. |+.|+.+|..+.
T Consensus       195 ~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~-~~~~V~gvE~~~~ai~~A~~na~~n~i~-n~~~~~~~~~~~  272 (358)
T d1uwva2         195 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAT-QAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEED  272 (358)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHT-TSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSC
T ss_pred             hhhhHHHHHHHHhhccCCCceEEEecccccccchhccc-cccEEEeccCcHHHHHHHHHhHHhcccc-cceeeecchhhh
Confidence            45677888888888888899999999999999999998 5679999999999999999999999885 799999998764


Q ss_pred             -C---CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHHHHHHhhcccCCCCcchHHHH
Q psy2408         151 -P---FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLPLLSVSKNDNKFKEYVKKNIHSNFILVEHYPDL  226 (298)
Q Consensus       151 -~---~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (298)
                       +   ....++|+|+..--=.-+ + +.++.+.+. +|.-.++|++-+        ..+.              .++. .
T Consensus       273 ~~~~~~~~~~~d~vilDPPR~G~-~-~~~~~l~~~-~~~~ivYVSCnp--------~Tla--------------RDl~-~  326 (358)
T d1uwva2         273 VTKQPWAKNGFDKVLLDPARAGA-A-GVMQQIIKL-EPIRIVYVSCNP--------ATLA--------------RDSE-A  326 (358)
T ss_dssp             CSSSGGGTTCCSEEEECCCTTCC-H-HHHHHHHHH-CCSEEEEEESCH--------HHHH--------------HHHH-H
T ss_pred             hhhhhhhhccCceEEeCCCCccH-H-HHHHHHHHc-CCCEEEEEeCCH--------HHHH--------------HHHH-H
Confidence             2   224678998762110000 0 445555543 677677776432        1111              1233 3


Q ss_pred             HHhCCCcEEEEEeCCCC
Q psy2408         227 LNKSGFELIKIDDITSH  243 (298)
Q Consensus       227 l~~~Gf~~~~~~~~~~~  243 (298)
                      |.+.||++..+..+..-
T Consensus       327 l~~~gy~l~~i~~~D~F  343 (358)
T d1uwva2         327 LLKAGYTIARLAMLDMF  343 (358)
T ss_dssp             HHHTTCEEEEEEEECCS
T ss_pred             HHHCCCeEeEEEEEecC
Confidence            55689999988766544

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.97  E-value=7e-10  Score=90.22  Aligned_cols=107  Identities=17%  Similarity=0.044  Sum_probs=81.5

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc---------CCCCceEEEECCCCCCCCCCCCe
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE---------GLLDKVNFLHGDALNLPFDNDSF  157 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~---------~~~~~i~~~~~d~~~~~~~~~~f  157 (298)
                      +.+.+||.+|+|.|..+..+.+....++++||+++..++.|++.+...         ...++++++.+|+..+--.+++|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y  150 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  150 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence            456799999999999999988755568999999999999999876422         23468999999987642235789


Q ss_pred             eEEEecccccccC-----hHHHHHHHhhcccCCcEEEEEeC
Q psy2408         158 DGGWFFESIFHMN-----HSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       158 D~V~~~~~l~~~~-----~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      |+|++-..-..-+     ..++++.+++.|+|+|.++....
T Consensus       151 DvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~  191 (276)
T d1mjfa_         151 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  191 (276)
T ss_dssp             EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence            9998643221111     12899999999999999887643

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.94  E-value=1e-10  Score=93.29  Aligned_cols=93  Identities=20%  Similarity=0.256  Sum_probs=77.4

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      ...+.+++.+.+.++.+|||||||+|.++..|++ .+.+|+++|+++.+++.+++++..   .++++++++|+.+++++.
T Consensus        16 ~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~-~~~~v~aIE~D~~l~~~l~~~~~~---~~n~~ii~~D~l~~~~~~   91 (245)
T d1yuba_          16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAK-ISKQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQFQFPN   91 (245)
T ss_dssp             TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHH-HSSEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTTTCCC
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHh-hcCceeEeeecccchhhhhhhhhh---ccchhhhhhhhhcccccc
Confidence            3467889999999999999999999999999998 478999999999998888766543   257999999999998887


Q ss_pred             CCeeEEEecccccccChH
Q psy2408         155 DSFDGGWFFESIFHMNHS  172 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~  172 (298)
                      ..++.|+++-. +|+..+
T Consensus        92 ~~~~~vv~NLP-Y~Ist~  108 (245)
T d1yuba_          92 KQRYKIVGNIP-YHLSTQ  108 (245)
T ss_dssp             SSEEEEEEECC-SSSCHH
T ss_pred             ceeeeEeeeee-hhhhHH
Confidence            77777776555 467666

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.91  E-value=1.8e-09  Score=82.44  Aligned_cols=123  Identities=14%  Similarity=0.162  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEECC
Q psy2408          69 FAQGSDKLSRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLD-KVNFLHGD  146 (298)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-~i~~~~~d  146 (298)
                      .++...++.+.+.+.+.. -.+.+|||+.||||.++...+.+...+|+.||.+...+..++++++..+... ...+...|
T Consensus        23 ~RPt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d  102 (183)
T d2ifta1          23 LRPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQS  102 (183)
T ss_dssp             -----CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSC
T ss_pred             cCcCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccc
Confidence            445555666666665532 2678999999999999999998534499999999999999999999887654 45666666


Q ss_pred             CCC---CCCCCCCeeEEEecccccccChH-HHHHHHh--hcccCCcEEEEEe
Q psy2408         147 ALN---LPFDNDSFDGGWFFESIFHMNHS-AALNEAR--RVLKSGSILTLTD  192 (298)
Q Consensus       147 ~~~---~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~--r~LkpgG~l~i~~  192 (298)
                      +..   ......+||+|++.--... ... ..+..+.  .+|+++|.+++..
T Consensus       103 ~~~~l~~~~~~~~fDlIFlDPPY~~-~~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         103 SLDFLKQPQNQPHFDVVFLDPPFHF-NLAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             HHHHTTSCCSSCCEEEEEECCCSSS-CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ccccccccccCCcccEEEechhHhh-hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            543   2233467999988554332 223 6666665  4799999888854

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.87  E-value=9.9e-09  Score=85.82  Aligned_cols=111  Identities=16%  Similarity=0.100  Sum_probs=84.0

Q ss_pred             HHhCCCCCCCeEEEeCCCCCHHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCC
Q psy2408          81 INKTSITKGQRFIDIGCGFGLSGIRLAKAK------GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDN  154 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~------~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  154 (298)
                      ...+...++.+|||.|||+|.++..+..+.      ..+++|+|+++.++..|+..+...+.  ...+.+.|..... +.
T Consensus       110 ~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~  186 (328)
T d2f8la1         110 EKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-LV  186 (328)
T ss_dssp             HHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-CC
T ss_pred             HHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhhhcccccccc-cc
Confidence            344455678899999999999998887542      24799999999999999988887664  3667778766543 45


Q ss_pred             CCeeEEEecccccccCh------------------H-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         155 DSFDGGWFFESIFHMNH------------------S-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~------------------~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ++||+|+++-.+.....                  . .++..+.+.|+|||++++..+.
T Consensus       187 ~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~  245 (328)
T d2f8la1         187 DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  245 (328)
T ss_dssp             CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             ccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence            78999999755432111                  1 5799999999999998776554

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.85  E-value=4.4e-09  Score=86.76  Aligned_cols=106  Identities=13%  Similarity=0.067  Sum_probs=81.4

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc--C--CCCceEEEECCCCCC-CCCCCCeeEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAE--G--LLDKVNFLHGDALNL-PFDNDSFDGG  160 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~--~--~~~~i~~~~~d~~~~-~~~~~~fD~V  160 (298)
                      +.+.+||.||+|.|..+..+.+.. ..+|++||+++..++.|++.+...  +  -+++++++.+|+... .-.+++||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            356799999999999999998864 469999999999999999987532  1  235799999998775 2234789999


Q ss_pred             Eeccc--cc------ccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         161 WFFES--IF------HMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       161 ~~~~~--l~------~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ++-..  ..      .+-..++++.+++.|+|||.+++..
T Consensus       156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            96332  11      1112289999999999999988754

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.85  E-value=7.5e-09  Score=78.41  Aligned_cols=112  Identities=17%  Similarity=0.175  Sum_probs=88.9

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----  151 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----  151 (298)
                      .+.+++.+.+.++..++|..||.|..+..+.+. +++|+|+|.++.++..++..     ...++.+++.++.++.     
T Consensus         7 l~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~   80 (182)
T d1wg8a2           7 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAA   80 (182)
T ss_dssp             HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHH
Confidence            556677788899999999999999999999884 67999999999999988764     2357999999887752     


Q ss_pred             CCCCCeeEEEecccccccC---------hH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 FDNDSFDGGWFFESIFHMN---------HS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~---------~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ...+.+|.|++...+..++         .. ..|.....+|+|||++++..+.
T Consensus        81 ~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh  133 (182)
T d1wg8a2          81 LGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH  133 (182)
T ss_dssp             TTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             cCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence            3457899998754443221         11 6788889999999999988765

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.3e-08  Score=82.28  Aligned_cols=88  Identities=17%  Similarity=0.208  Sum_probs=74.7

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      ....+.+++.+.+.++.+|||||+|+|.++..|++. +.+|+++++++.+++..++.+.......++.++.+|+.+.+++
T Consensus         7 ~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~   85 (278)
T d1zq9a1           7 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP   85 (278)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc-CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh
Confidence            456788889999889999999999999999999984 7899999999999999999988766667899999999988654


Q ss_pred             CCCeeEEEecc
Q psy2408         154 NDSFDGGWFFE  164 (298)
Q Consensus       154 ~~~fD~V~~~~  164 (298)
                        .++.|+++-
T Consensus        86 --~~~~vV~NL   94 (278)
T d1zq9a1          86 --FFDTCVANL   94 (278)
T ss_dssp             --CCSEEEEEC
T ss_pred             --hhhhhhcch
Confidence              345666543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.83  E-value=9.3e-09  Score=85.00  Aligned_cols=121  Identities=19%  Similarity=0.151  Sum_probs=93.2

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD  153 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  153 (298)
                      -.......+.+.+|.+|||++||.|.=+..++...  .+.++++|.++..+...+.++...++. ++.+...|...++..
T Consensus       104 aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-~i~~~~~d~~~~~~~  182 (313)
T d1ixka_         104 SSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGEL  182 (313)
T ss_dssp             HHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGG
T ss_pred             cccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-ccccccccccccccc
Confidence            34444555677899999999999999999998764  468999999999999999999998884 577788887776555


Q ss_pred             CCCeeEEEe------cccccccC---------------h-H-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         154 NDSFDGGWF------FESIFHMN---------------H-S-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       154 ~~~fD~V~~------~~~l~~~~---------------~-~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      ...||.|++      .+++..-+               . . ++|.++.+.|||||+++-++-+...
T Consensus       183 ~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~  249 (313)
T d1ixka_         183 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP  249 (313)
T ss_dssp             CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred             cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence            678999986      22221111               1 1 7889999999999998888776544

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.79  E-value=1e-08  Score=83.54  Aligned_cols=108  Identities=13%  Similarity=0.030  Sum_probs=82.3

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC---CCCceEEEECCCCCC-CCCCCCeeEEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEG---LLDKVNFLHGDALNL-PFDNDSFDGGW  161 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~---~~~~i~~~~~d~~~~-~~~~~~fD~V~  161 (298)
                      +.+.+||-||+|.|..+..+.+.. ..++++||+++..++.|++.+....   -+++++++.+|+... .-..++||+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            345799999999999999999864 4689999999999999999765321   136899999998764 22357899999


Q ss_pred             eccccc------ccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         162 FFESIF------HMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       162 ~~~~l~------~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +-..-.      ++-..++++.+++.|+|+|.++....+
T Consensus       168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence            643221      122229999999999999999887544

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.78  E-value=1.5e-08  Score=82.51  Aligned_cols=108  Identities=17%  Similarity=0.155  Sum_probs=83.1

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhc---CCCCceEEEECCCCCC--CCCCCCeeEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAE---GLLDKVNFLHGDALNL--PFDNDSFDGG  160 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~---~~~~~i~~~~~d~~~~--~~~~~~fD~V  160 (298)
                      +...+||-||.|.|..+..+.+..+ .++++||+++..++.|++.+...   .-+++++++.+|....  ..++++||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            3457999999999999999998644 58999999999999999976431   1246799999997654  2345689999


Q ss_pred             Eeccccc-----ccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         161 WFFESIF-----HMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       161 ~~~~~l~-----~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +.-..-.     ++-...+++.+++.|+|||.++....+
T Consensus       159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            9733221     111228999999999999999987544

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.75  E-value=3.5e-08  Score=79.76  Aligned_cols=108  Identities=13%  Similarity=0.023  Sum_probs=83.1

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhc-C--CCCceEEEECCCCCC-CCCCCCeeEEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAE-G--LLDKVNFLHGDALNL-PFDNDSFDGGW  161 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~-~--~~~~i~~~~~d~~~~-~~~~~~fD~V~  161 (298)
                      +.+.+||-||.|.|..+..+.+..+ .++++||+++..++.|++.+... +  -+++++++..|+... .-..++||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            3557999999999999999998644 69999999999999999987531 1  246899999998764 22357899998


Q ss_pred             ecccccc-----cChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         162 FFESIFH-----MNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       162 ~~~~l~~-----~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .-..-..     +-..++++.+.+.|+|+|.++....+
T Consensus       154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s  191 (274)
T d1iy9a_         154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (274)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence            7432211     11229999999999999999886433

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.72  E-value=1.8e-08  Score=82.45  Aligned_cols=108  Identities=19%  Similarity=0.108  Sum_probs=80.5

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcC---CCCceEEEECCCCCC-CCCCCCeeEEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEG---LLDKVNFLHGDALNL-PFDNDSFDGGW  161 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~---~~~~i~~~~~d~~~~-~~~~~~fD~V~  161 (298)
                      +.+.+||-||.|.|..+..+.+..+ .+|++||+++..++.|++.+....   -+++++++.+|+... .-..++||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            3457999999999999999998644 589999999999999999865321   135799999998764 22357899999


Q ss_pred             ecccccccC-----hHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         162 FFESIFHMN-----HSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       162 ~~~~l~~~~-----~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +-..-..-+     ...+++.+++.|+|||.++....+
T Consensus       185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s  222 (312)
T d2b2ca1         185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES  222 (312)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence            743322111     118999999999999999987543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.7e-08  Score=81.93  Aligned_cols=108  Identities=18%  Similarity=0.040  Sum_probs=81.8

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc---CCCCceEEEECCCCCC-CCCCCCeeEEE
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAE---GLLDKVNFLHGDALNL-PFDNDSFDGGW  161 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~i~~~~~d~~~~-~~~~~~fD~V~  161 (298)
                      +.+.+||-||.|.|..+..+.+.. ..++++||+++..++.|++.+...   --+++++++.+|+..+ .-..++||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            455799999999999999999864 469999999999999999987531   1246899999998764 22357899999


Q ss_pred             ecccccc-cChH----HHHHHHhhcccCCcEEEEEeCC
Q psy2408         162 FFESIFH-MNHS----AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       162 ~~~~l~~-~~~~----~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +-..--. .+..    .+++.+++.|+|||.+++...+
T Consensus       157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            7432111 1111    8999999999999999887544

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.71  E-value=2.1e-08  Score=78.86  Aligned_cols=110  Identities=19%  Similarity=0.191  Sum_probs=82.3

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP  151 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~  151 (298)
                      ..+++.|++.+...++.+|||.|||+|.++..+.+..  ...++|+|+++..+..          ..+..++++|.....
T Consensus         5 ~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~~~   74 (223)
T d2ih2a1           5 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLLWE   74 (223)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGGCC
T ss_pred             HHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhccc
Confidence            4567788888888899999999999999988887653  4579999999864332          234677888887754


Q ss_pred             CCCCCeeEEEecccccccC----------------------------h-H-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 FDNDSFDGGWFFESIFHMN----------------------------H-S-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~----------------------------~-~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                       +...||+|+++-......                            + . .++..+.+.|+|||++++..+.
T Consensus        75 -~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~  146 (223)
T d2ih2a1          75 -PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  146 (223)
T ss_dssp             -CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             -cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence             357899999865432210                            1 2 5678889999999998887554

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.68  E-value=3.5e-08  Score=77.61  Aligned_cols=101  Identities=14%  Similarity=0.089  Sum_probs=83.5

Q ss_pred             CCCCeEEEeCCCCCHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC---CCCCeeEEEe
Q psy2408          87 TKGQRFIDIGCGFGLSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF---DNDSFDGGWF  162 (298)
Q Consensus        87 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~fD~V~~  162 (298)
                      ..+.+|+|+|+|.|.-++.++-. +..+++.+|.+..-+...+......++. ++.+++..++.+..   ..++||+|++
T Consensus        69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~~~~~~~D~v~s  147 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTA  147 (239)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccccccccceEEEE
Confidence            35679999999999999999875 5789999999999999999988888885 68888887765431   1368999998


Q ss_pred             cccccccChH-HHHHHHhhcccCCcEEEEEe
Q psy2408         163 FESIFHMNHS-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       163 ~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      ..+    .+. .++.-+...+++||.+++.-
T Consensus       148 RAv----a~l~~ll~~~~~~l~~~g~~i~~K  174 (239)
T d1xdza_         148 RAV----ARLSVLSELCLPLVKKNGLFVALK  174 (239)
T ss_dssp             ECC----SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             hhh----hCHHHHHHHHhhhcccCCEEEEEC
Confidence            754    355 89999999999999988863

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=3.8e-08  Score=78.46  Aligned_cols=75  Identities=15%  Similarity=0.192  Sum_probs=64.0

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF  152 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~  152 (298)
                      ..+.+.+++.+.+.++..|||||||+|.++..|++ .+.+|+++|+++.+++..++....   .+++.++.+|+.++++
T Consensus         7 ~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~-~~~~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_           7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGE-RLDQLTVIELDRDLAARLQTHPFL---GPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHT-TCSCEEEECCCHHHHHHHHTCTTT---GGGEEEECSCGGGCCH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHc-cCCceEEEEeccchhHHHHHHhhh---ccchhHHhhhhhhhcc
Confidence            45677888888888999999999999999999998 578999999999999998875432   2579999999988753

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=9.8e-08  Score=77.68  Aligned_cols=121  Identities=13%  Similarity=0.110  Sum_probs=90.0

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-CCC
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-PFD  153 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~  153 (298)
                      -.......+.+.++.+|||+++|.|.=+..+++.. +.+++++|+++..+...++++...|+. ++.....|.... ...
T Consensus        90 sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~~~~~  168 (284)
T d1sqga2          90 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCG  168 (284)
T ss_dssp             HHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHHT
T ss_pred             cccccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccchhcc
Confidence            33444555677899999999999999999998853 468999999999999999999999875 355555554332 123


Q ss_pred             CCCeeEEEe------cccccccCh----------------H-HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         154 NDSFDGGWF------FESIFHMNH----------------S-AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       154 ~~~fD~V~~------~~~l~~~~~----------------~-~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      .+.||.|++      .+++..-++                . .+|.++.+.|+|||+++-++-+...
T Consensus       169 ~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~  235 (284)
T d1sqga2         169 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP  235 (284)
T ss_dssp             TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred             cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCch
Confidence            468999996      233322221                2 8899999999999999988777544

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.54  E-value=2.9e-07  Score=79.40  Aligned_cols=120  Identities=14%  Similarity=0.080  Sum_probs=93.2

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--------------CCeEEEEeCCHHHHHHHHHHHHhcCCCC-
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--------------GCRVDGITISKFQQESAMKTAKAEGLLD-  138 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--------------~~~v~~vD~s~~~l~~a~~~~~~~~~~~-  138 (298)
                      ..+++.|++.+.+.++.+|+|.+||+|.+...+.+..              ...+.|+|+++.+...|+..+...+... 
T Consensus       148 ~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~  227 (425)
T d2okca1         148 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD  227 (425)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred             hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccc
Confidence            5677888888888888999999999999998877642              1359999999999999999888777642 


Q ss_pred             ceEEEECCCCCCCCCCCCeeEEEeccccccc----------------Ch-H-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         139 KVNFLHGDALNLPFDNDSFDGGWFFESIFHM----------------NH-S-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       139 ~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~----------------~~-~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +..+...|....+ +..+||+|+++-.+..-                .+ . .++..+.+.|++||++++..+.
T Consensus       228 ~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~  300 (425)
T d2okca1         228 RSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  300 (425)
T ss_dssp             CCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence            4567788877643 45789999986554211                11 2 6999999999999998887553

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=8.3e-07  Score=72.38  Aligned_cols=114  Identities=14%  Similarity=-0.014  Sum_probs=83.8

Q ss_pred             HhCCCCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC---CCC
Q psy2408          82 NKTSITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD---NDS  156 (298)
Q Consensus        82 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~  156 (298)
                      ..+.+.+|.+|||+++|.|.-+..++...  ..+++++|+++..+..+++++...|+. ++.+...|...++..   .+.
T Consensus        88 ~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~~~~~~  166 (293)
T d2b9ea1          88 MLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRYHE  166 (293)
T ss_dssp             HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTT
T ss_pred             cccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhcccccccce
Confidence            34466889999999999999999988753  468999999999999999999999985 689999998776322   257


Q ss_pred             eeEEEec------ccccccC-----------------hH--HHHHHHhhcccCCcEEEEEeCCCCC
Q psy2408         157 FDGGWFF------ESIFHMN-----------------HS--AALNEARRVLKSGSILTLTDLPLLS  197 (298)
Q Consensus       157 fD~V~~~------~~l~~~~-----------------~~--~~l~~~~r~LkpgG~l~i~~~~~~~  197 (298)
                      ||.|++-      +++...+                 ..  .++..+. .++|||.|+-++-+...
T Consensus       167 fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~  231 (293)
T d2b9ea1         167 VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQ  231 (293)
T ss_dssp             EEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCG
T ss_pred             eeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCCh
Confidence            9999862      2221111                 01  4555555 47999998887766544

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=1.4e-06  Score=65.62  Aligned_cols=97  Identities=16%  Similarity=0.153  Sum_probs=73.0

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--------CCCC
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAK--GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--------FDND  155 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~  155 (298)
                      ++++.+|||+||++|.++..+.+..  ...++++|+.+-           ..+ +++.++++|+.+..        ...+
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i-~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPI-VGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCC-TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------ccc-CCceEeecccccchhhhhhhhhccCc
Confidence            4788999999999999999998863  368999998651           122 46889999987631        2356


Q ss_pred             CeeEEEecccccccChH------------HHHHHHhhcccCCcEEEEEeCC
Q psy2408         156 SFDGGWFFESIFHMNHS------------AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       156 ~fD~V~~~~~l~~~~~~------------~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .+|+|++-.+.......            ..+.-+.++|++||.+++-.+.
T Consensus        88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~  138 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ  138 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence            89999987665443321            5666778999999999997665

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.33  E-value=4.5e-07  Score=71.09  Aligned_cols=108  Identities=15%  Similarity=0.207  Sum_probs=72.3

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh-----cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA-----KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN  149 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~  149 (298)
                      .+.+.++..+   ++.+|||||++.|..+..++..     ..++++++|+++.......      ....+++++.+|..+
T Consensus        70 ~~~~eli~~~---KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~------~~~~~I~~i~gDs~~  140 (232)
T d2bm8a1          70 AVYHDMLWEL---RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSD  140 (232)
T ss_dssp             HHHHHHHHHH---CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSC
T ss_pred             HHHHHHHHHh---CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh------ccccceeeeeccccc
Confidence            3445566665   3459999999999888777653     2579999999764332211      113579999999765


Q ss_pred             CC----CCCCCeeEEEecccccccChH--HHHHHHhhcccCCcEEEEEeCC
Q psy2408         150 LP----FDNDSFDGGWFFESIFHMNHS--AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       150 ~~----~~~~~fD~V~~~~~l~~~~~~--~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ..    +....+|+|+.-..  |....  ..+ ++...|+|||++++.+..
T Consensus       141 ~~~~~~l~~~~~dlIfID~~--H~~~~v~~~~-~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         141 LTTFEHLREMAHPLIFIDNA--HANTFNIMKW-AVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             SGGGGGGSSSCSSEEEEESS--CSSHHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred             HHHHHHHHhcCCCEEEEcCC--cchHHHHHHH-HHhcccCcCCEEEEEcCC
Confidence            42    33456888876443  44444  333 466899999999997653

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=98.32  E-value=4.7e-06  Score=62.13  Aligned_cols=103  Identities=21%  Similarity=0.171  Sum_probs=73.3

Q ss_pred             HHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-------
Q psy2408          80 MINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-------  151 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-------  151 (298)
                      .++..+++++.+||-+|||. |..+..+++..|++|+++|.++..++.+++.    +.  .. .+..+.....       
T Consensus        18 a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga--~~-~~~~~~~~~~~~~~~~~   90 (170)
T d1e3ja2          18 ACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GA--DV-TLVVDPAKEEESSIIER   90 (170)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC--SE-EEECCTTTSCHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CC--cE-EEeccccccccchhhhh
Confidence            35667789999999999995 7778888887899999999999999988765    21  12 2222221111       


Q ss_pred             ---CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 ---FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 ---~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                         ...+.+|+|+-     ....+..+..+.++++|+|++++....
T Consensus        91 ~~~~~g~g~D~vid-----~~g~~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2          91 IRSAIGDLPNVTID-----CSGNEKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             HHHHSSSCCSEEEE-----CSCCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             hhcccccCCceeee-----cCCChHHHHHHHHHHhcCCceEEEecC
Confidence               01246888753     334447788899999999999987544

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=1.6e-06  Score=76.57  Aligned_cols=121  Identities=10%  Similarity=-0.030  Sum_probs=87.0

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-------------------CCeEEEEeCCHHHHHHHHHHHHhc
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-------------------GCRVDGITISKFQQESAMKTAKAE  134 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-------------------~~~v~~vD~s~~~l~~a~~~~~~~  134 (298)
                      ..+++.|++.+.+.++.+|+|.+||+|.+...+.+..                   ...++|+|+++.+...|+-.+--.
T Consensus       150 ~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~  229 (524)
T d2ar0a1         150 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH  229 (524)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred             cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhh
Confidence            5677888888888889999999999999988776531                   125899999999999999888766


Q ss_pred             CCCCce----EEEECCCCCCC-CCCCCeeEEEecccccc--------------cChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         135 GLLDKV----NFLHGDALNLP-FDNDSFDGGWFFESIFH--------------MNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       135 ~~~~~i----~~~~~d~~~~~-~~~~~fD~V~~~~~l~~--------------~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +...++    .+...+....+ ....+||+|+++-.+..              .... .++..+.+.|+|||++.+..+.
T Consensus       230 ~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~  309 (524)
T d2ar0a1         230 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD  309 (524)
T ss_dssp             TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEeh
Confidence            653221    23444433221 23467999998654421              1112 7999999999999998887653

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.29  E-value=8e-07  Score=74.72  Aligned_cols=102  Identities=22%  Similarity=0.079  Sum_probs=79.6

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCC--------------ceEEEECCCCCCC-
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLD--------------KVNFLHGDALNLP-  151 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~--------------~i~~~~~d~~~~~-  151 (298)
                      .+.+|||..||+|..++..+...++ +|+++|+|+..++.++++++.+++..              ++.+.+.|+..+. 
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            5679999999999999988776544 89999999999999999998876532              3556666654431 


Q ss_pred             CCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         152 FDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       152 ~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      -..+.||+|..--    +..+ .+|..+.+.++.||.|.++..
T Consensus       125 ~~~~~fDvIDiDP----fGs~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         125 ERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhcCcCCcccCCC----CCCcHHHHHHHHHHhccCCEEEEEec
Confidence            1235799987532    4566 999999999999999999744

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.07  E-value=1.7e-06  Score=64.54  Aligned_cols=103  Identities=21%  Similarity=0.234  Sum_probs=70.4

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCCCC-CCCCCCe
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DALNL-PFDNDSF  157 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~~-~~~~~~f  157 (298)
                      +...+++++++||-+|+|. |..+..+++..|++|+++|.+++.++.+++.    |.+   .++.. +-.+. ....+.+
T Consensus        20 l~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~~~~~~   92 (168)
T d1piwa2          20 LVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYFDTF   92 (168)
T ss_dssp             HHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSCSCE
T ss_pred             HHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc----CCc---EEeeccchHHHHHhhhccc
Confidence            4556889999999999984 7888888887899999999999999888765    322   23322 11111 1123679


Q ss_pred             eEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         158 DGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       158 D~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      |+|+....-.+   ...+....++|+|+|++++...
T Consensus        93 d~vi~~~~~~~---~~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2          93 DLIVVCASSLT---DIDFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             EEEEECCSCST---TCCTTTGGGGEEEEEEEEECCC
T ss_pred             ceEEEEecCCc---cchHHHHHHHhhccceEEEecc
Confidence            98875422211   1224567899999999988654

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.04  E-value=4.2e-05  Score=59.34  Aligned_cols=117  Identities=21%  Similarity=0.237  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCCC
Q psy2408          72 GSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DALN  149 (298)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~  149 (298)
                      +...+ .++.+...+.++.+|+|+|||.|.++..++... ...+.|+|+--..-+.- ......+. +-+.+... |+..
T Consensus        51 ~~~Kl-~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P-~~~~~~~~-ni~~~~~~~dv~~  127 (257)
T d2p41a1          51 GSAKL-RWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEP-IPMSTYGW-NLVRLQSGVDVFF  127 (257)
T ss_dssp             HHHHH-HHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCSTTG-GGEEEECSCCTTT
T ss_pred             HHHHH-HHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCC-cccccccc-ccccchhhhhHHh
Confidence            33344 445566677888999999999999999998863 34778888732100000 00000000 11233332 2333


Q ss_pred             CCCCCCCeeEEEecccccccChH--------HHHHHHhhcccCCcEEEEEeCC
Q psy2408         150 LPFDNDSFDGGWFFESIFHMNHS--------AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       150 ~~~~~~~fD~V~~~~~l~~~~~~--------~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                        .+.+..|+|+|-.+ .+.+++        ..+.-+.+.|+|||-+++-.+.
T Consensus       128 --l~~~~~D~vlcDm~-ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~  177 (257)
T d2p41a1         128 --IPPERCDTLLCDIG-ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN  177 (257)
T ss_dssp             --SCCCCCSEEEECCC-CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred             --cCCCcCCEEEeeCC-CCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence              34678999998654 334432        6667777999999998887665

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.03  E-value=5.4e-06  Score=61.51  Aligned_cols=100  Identities=21%  Similarity=0.175  Sum_probs=68.1

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CCC
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FDN  154 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~  154 (298)
                      ++..+++++++||=+|||. |..+..+++..|++|+++|.++..++.+++.    |.   ..++..+-.+..     ...
T Consensus        20 l~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~----Ga---~~~i~~~~~~~~~~~~~~~~   92 (166)
T d1llua2          20 LKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL----GA---SLTVNARQEDPVEAIQRDIG   92 (166)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC---SEEEETTTSCHHHHHHHHHS
T ss_pred             HHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc----Cc---cccccccchhHHHHHHHhhc
Confidence            3556788999999999986 7788888887899999999999998888754    32   233433222210     011


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +.+|.|++.      .....+....++|+|+|++++...
T Consensus        93 g~~~~i~~~------~~~~~~~~~~~~l~~~G~iv~~G~  125 (166)
T d1llua2          93 GAHGVLVTA------VSNSAFGQAIGMARRGGTIALVGL  125 (166)
T ss_dssp             SEEEEEECC------SCHHHHHHHHTTEEEEEEEEECCC
T ss_pred             CCccccccc------ccchHHHHHHHHhcCCcEEEEEEe
Confidence            223333321      223677888999999999988643

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.02  E-value=1.2e-05  Score=60.49  Aligned_cols=104  Identities=20%  Similarity=0.159  Sum_probs=71.7

Q ss_pred             HHHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------
Q psy2408          79 IMINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------  150 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------  150 (298)
                      .+.+...+++|.+||-+|||. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++...-.+.      
T Consensus        19 al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~   91 (182)
T d1vj0a2          19 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD---LTLNRRETSVEERRKA   91 (182)
T ss_dssp             HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS---EEEETTTSCHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce---EEEeccccchHHHHHH
Confidence            334555678999999999985 7888888887787 799999999999988754    321   2232211110      


Q ss_pred             --C-CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         151 --P-FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       151 --~-~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                        . .....+|+|+-.     ...+..++...++|+|||++++....
T Consensus        92 i~~~~~~~g~Dvvid~-----vG~~~~~~~a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2          92 IMDITHGRGADFILEA-----TGDSRALLEGSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             HHHHTTTSCEEEEEEC-----SSCTTHHHHHHHHEEEEEEEEECCCC
T ss_pred             HHHhhCCCCceEEeec-----CCchhHHHHHHHHhcCCCEEEEEeec
Confidence              0 123469998632     33345678889999999999876543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=4.4e-05  Score=56.69  Aligned_cols=103  Identities=19%  Similarity=0.148  Sum_probs=72.9

Q ss_pred             HHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC------
Q psy2408          80 MINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP------  151 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~------  151 (298)
                      .+++.++.++.+||=+|||. |..+..+++..|+ +|+++|.++..++.|++.    |.+   .++..+-.+..      
T Consensus        18 a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~~~~~~~~~~~~~   90 (171)
T d1pl8a2          18 ACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD---LVLQISKESPQEIARKV   90 (171)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEECSSCCHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc---ccccccccccccccccc
Confidence            45667889999999999987 7777777777787 799999999999988755    321   22332222210      


Q ss_pred             --CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         152 --FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       152 --~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                        .....+|+|+-     ....+..++...+++++||++++....
T Consensus        91 ~~~~g~g~Dvvid-----~~G~~~~~~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2          91 EGQLGCKPEVTIE-----CTGAEASIQAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             HHHHTSCCSEEEE-----CSCCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             cccCCCCceEEEe-----ccCCchhHHHHHHHhcCCCEEEEEecC
Confidence              01246888754     334457888999999999999987654

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.95  E-value=1.3e-05  Score=62.94  Aligned_cols=90  Identities=14%  Similarity=0.156  Sum_probs=65.7

Q ss_pred             HHHHHhCCCCCC--CeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC--------CCceEEEECCC
Q psy2408          78 RIMINKTSITKG--QRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGL--------LDKVNFLHGDA  147 (298)
Q Consensus        78 ~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--------~~~i~~~~~d~  147 (298)
                      +.+.+.++++++  .+|||.-||.|..+..++. .|++|++++-++......++.+.....        ..+++++++|.
T Consensus        76 ~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~-~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds  154 (250)
T d2oyra1          76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLAS-VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHH-HTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             hHHHHHhcCCCCCCCEEEECCCcccHHHHHHHh-CCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence            455666666554  4899999999999999998 689999999999876666655443211        13789999997


Q ss_pred             CCC-CCCCCCeeEEEecccccc
Q psy2408         148 LNL-PFDNDSFDGGWFFESIFH  168 (298)
Q Consensus       148 ~~~-~~~~~~fD~V~~~~~l~~  168 (298)
                      .++ .-..++||+|++--++.+
T Consensus       155 ~~~L~~~~~~~DvIYlDPMFp~  176 (250)
T d2oyra1         155 LTALTDITPRPQVVYLDPMFPH  176 (250)
T ss_dssp             HHHSTTCSSCCSEEEECCCCCC
T ss_pred             HHHHhccCCCCCEEEECCCCcc
Confidence            653 223467999998655543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.90  E-value=3.6e-05  Score=57.41  Aligned_cols=105  Identities=17%  Similarity=0.213  Sum_probs=74.5

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC----
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL----  150 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~----  150 (298)
                      ...+++..+++++.+||-+|||. |..+..+++..++ .++++|.++..++.+++.    |.   ..++..+-.+.    
T Consensus        17 ~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga---~~~i~~~~~~~~~~i   89 (174)
T d1f8fa2          17 AGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA---THVINSKTQDPVAAI   89 (174)
T ss_dssp             HHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC---SEEEETTTSCHHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CC---eEEEeCCCcCHHHHH
Confidence            34567778889999999999986 6667777776665 677889999999988765    32   23444332221    


Q ss_pred             -CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         151 -PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       151 -~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                       .+.++.+|+|+-     ....+..++...++++|+|++++...
T Consensus        90 ~~~t~gg~D~vid-----~~G~~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          90 KEITDGGVNFALE-----STGSPEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             HHHTTSCEEEEEE-----CSCCHHHHHHHHHTEEEEEEEEECCC
T ss_pred             HHHcCCCCcEEEE-----cCCcHHHHHHHHhcccCceEEEEEee
Confidence             122467998753     34445788899999999999988654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.87  E-value=2.3e-05  Score=58.51  Aligned_cols=102  Identities=25%  Similarity=0.312  Sum_probs=72.4

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----C-C
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----P-F  152 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~  152 (298)
                      ++..+++++.+||-+|||. |..+..+++..|+ +|+++|.++..++.+++.    |.   ..++...-.++     . .
T Consensus        20 ~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga---~~~i~~~~~~~~~~v~~~t   92 (174)
T d1jqba2          20 AELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GA---TDILNYKNGHIEDQVMKLT   92 (174)
T ss_dssp             HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TC---SEEECGGGSCHHHHHHHHT
T ss_pred             HHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Cc---cccccccchhHHHHHHHHh
Confidence            4667889999999999997 8888888887786 799999999999988765    32   12332221111     0 1


Q ss_pred             CCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         153 DNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ....+|+|+-.     ...+..++...++++|+|++++....
T Consensus        93 ~g~G~D~vid~-----~g~~~~~~~a~~~~~~~G~iv~~G~~  129 (174)
T d1jqba2          93 NGKGVDRVIMA-----GGGSETLSQAVKMVKPGGIISNINYH  129 (174)
T ss_dssp             TTSCEEEEEEC-----SSCTTHHHHHHHHEEEEEEEEECCCC
T ss_pred             hccCcceEEEc-----cCCHHHHHHHHHHHhcCCEEEEEeec
Confidence            23459988543     33335778888999999999986543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.87  E-value=3e-05  Score=58.99  Aligned_cols=108  Identities=16%  Similarity=0.082  Sum_probs=73.0

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC------C
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP------F  152 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~------~  152 (298)
                      ++..++++|.+||-+|||. |..+..+++..++ +|+++|.++..++.|++.    |.   ..++...-.++.      .
T Consensus        18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga---~~~~~~~~~~~~~~i~~~t   90 (195)
T d1kola2          18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF---EIADLSLDTPLHEQIAALL   90 (195)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC---EEEETTSSSCHHHHHHHHH
T ss_pred             HHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cc---cEEEeCCCcCHHHHHHHHh
Confidence            4567889999999999997 6677777776665 899999999999988765    31   122221111110      1


Q ss_pred             CCCCeeEEEeccccc----------ccChHHHHHHHhhcccCCcEEEEEeCCC
Q psy2408         153 DNDSFDGGWFFESIF----------HMNHSAALNEARRVLKSGSILTLTDLPL  195 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~----------~~~~~~~l~~~~r~LkpgG~l~i~~~~~  195 (298)
                      ....+|+++-.-...          ....+..++.+.++++|+|++++.....
T Consensus        91 ~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~  143 (195)
T d1kola2          91 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYV  143 (195)
T ss_dssp             SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCC
T ss_pred             CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecC
Confidence            234689988432211          1112289999999999999999876543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.86  E-value=9.3e-05  Score=54.77  Aligned_cols=103  Identities=17%  Similarity=0.247  Sum_probs=70.8

Q ss_pred             HHHhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC------
Q psy2408          80 MINKTSITKGQRFIDIGC-G-FGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL------  150 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~------  150 (298)
                      .++..++.++.+||=+|| | .|..+..+++..+ .+|+++|.++..++.+++.    |..   .++..+-.+.      
T Consensus        19 al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~   91 (170)
T d1jvba2          19 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRR   91 (170)
T ss_dssp             HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc---eeeccCCcCHHHHHHH
Confidence            346678899999999997 4 3566666666556 5999999999988888765    321   2333332221      


Q ss_pred             CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         151 PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       151 ~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ....+.+|+|+-.     ......++...++++|+|++++....
T Consensus        92 ~~~~~~~d~vid~-----~g~~~~~~~a~~~l~~~G~iv~~G~~  130 (170)
T d1jvba2          92 ITESKGVDAVIDL-----NNSEKTLSVYPKALAKQGKYVMVGLF  130 (170)
T ss_dssp             HTTTSCEEEEEES-----CCCHHHHTTGGGGEEEEEEEEECCSS
T ss_pred             Hhhcccchhhhcc-----cccchHHHhhhhhcccCCEEEEeccc
Confidence            0123569988753     33346778889999999999887544

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=2.9e-05  Score=57.56  Aligned_cols=101  Identities=24%  Similarity=0.245  Sum_probs=71.1

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-CCCCCCee
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-PFDNDSFD  158 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD  158 (298)
                      ++..++++|++||=+|||. |.++..+++..|++++++|.+++.++.+++.    |.   -.++...-... ....+.+|
T Consensus        23 l~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l----Ga---d~~i~~~~~~~~~~~~~~~D   95 (168)
T d1uufa2          23 LRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GA---DEVVNSRNADEMAAHLKSFD   95 (168)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TC---SEEEETTCHHHHHTTTTCEE
T ss_pred             HHHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc----CC---cEEEECchhhHHHHhcCCCc
Confidence            4667889999999999986 8888888887899999999999888777654    32   22333221111 11235799


Q ss_pred             EEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +|+-.-     ..+..+....++++|+|++++...
T Consensus        96 ~vid~~-----g~~~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2          96 FILNTV-----AAPHNLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             EEEECC-----SSCCCHHHHHTTEEEEEEEEECCC
T ss_pred             eeeeee-----ecchhHHHHHHHHhcCCEEEEecc
Confidence            886432     222456778899999999998654

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=97.81  E-value=0.00077  Score=55.51  Aligned_cols=150  Identities=15%  Similarity=0.118  Sum_probs=88.0

Q ss_pred             CCeEEEeCCCCCHHHHHHHHh-----------------cCCeEEEEeCCHHHHHHHHHHHHhc-CCCCc--eEEEECCCC
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKA-----------------KGCRVDGITISKFQQESAMKTAKAE-GLLDK--VNFLHGDAL  148 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~-----------------~~~~v~~vD~s~~~l~~a~~~~~~~-~~~~~--i~~~~~d~~  148 (298)
                      ..+|.|+||.+|..+..+...                 +..+|..-|+-.+=....=+.+... ....+  +.-+.+.+.
T Consensus        52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY  131 (359)
T d1m6ex_          52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence            368999999999988544321                 1235666665332221111111111 11111  233445665


Q ss_pred             CCCCCCCCeeEEEecccccccCh---------------------------------H-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         149 NLPFDNDSFDGGWFFESIFHMNH---------------------------------S-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       149 ~~~~~~~~fD~V~~~~~l~~~~~---------------------------------~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      .--+|+++.|+++++.++|++..                                 . .+|+.=.+-|+|||++++..+.
T Consensus       132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g  211 (359)
T d1m6ex_         132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG  211 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred             hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence            54578899999999999998641                                 1 5777777889999999998766


Q ss_pred             CCCCCCCh-------hHHH----HHHHh-----------hcccCCCCcchHHHHHHhCC-CcEEEEE
Q psy2408         195 LLSVSKND-------NKFK----EYVKK-----------NIHSNFILVEHYPDLLNKSG-FELIKID  238 (298)
Q Consensus       195 ~~~~~~~~-------~~~~----~~~~~-----------~~~~~~~~~~~~~~~l~~~G-f~~~~~~  238 (298)
                      ..+.....       ..+.    .+...           .....+.+.+|++..+++.| |.+...+
T Consensus       212 r~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e  278 (359)
T d1m6ex_         212 RRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE  278 (359)
T ss_dssp             CSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred             cCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeE
Confidence            54321100       1111    11111           11234678999999998866 6666554

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.74  E-value=0.00011  Score=54.56  Aligned_cols=96  Identities=13%  Similarity=0.109  Sum_probs=66.8

Q ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CCCCCee
Q psy2408          86 ITKGQRFIDIGCGF-GLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FDNDSFD  158 (298)
Q Consensus        86 ~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~fD  158 (298)
                      ++|+.+||-+|+|. |..+..+++..+ ..++++|.+++.++.+++.    +.   ..++..+-....     .....+|
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga---~~~i~~~~~~~~~~~~~~~~~g~d  102 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA---DHVVDARRDPVKQVMELTRGRGVN  102 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC---SEEEETTSCHHHHHHHHTTTCCEE
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc---ceeecCcccHHHHHHHhhCCCCce
Confidence            57899999999987 666677777666 4889999999888888754    22   234433211110     1235689


Q ss_pred             EEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         159 GGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       159 ~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      +|+-     .......+....++++++|++++.-.
T Consensus       103 ~vid-----~~g~~~~~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         103 VAMD-----FVGSQATVDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             EEEE-----SSCCHHHHHHGGGGEEEEEEEEECCC
T ss_pred             EEEE-----ecCcchHHHHHHHHHhCCCEEEEEeC
Confidence            8764     33344678899999999999998654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.74  E-value=3.4e-05  Score=57.06  Aligned_cols=101  Identities=20%  Similarity=0.181  Sum_probs=66.9

Q ss_pred             HHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CCC
Q psy2408          81 INKTSITKGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FDN  154 (298)
Q Consensus        81 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~  154 (298)
                      +...+++|+++||=.|||+ |.....+++..+++|+++|.++..++.+++.    |..   .++...-.+..     .. 
T Consensus        20 l~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~----Ga~---~~~~~~~~~~~~~~~~~~-   91 (168)
T d1rjwa2          20 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----GAD---LVVNPLKEDAAKFMKEKV-   91 (168)
T ss_dssp             HHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TCS---EEECTTTSCHHHHHHHHH-
T ss_pred             HHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc----Ccc---eecccccchhhhhccccc-
Confidence            4456788999999999997 6667777776789999999999998888664    321   12221111110     11 


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      ..+|.++...     .....+....+.|+|+|++++....
T Consensus        92 ~~~~~~v~~~-----~~~~~~~~a~~~l~~~G~i~~~g~~  126 (168)
T d1rjwa2          92 GGVHAAVVTA-----VSKPAFQSAYNSIRRGGACVLVGLP  126 (168)
T ss_dssp             SSEEEEEESS-----CCHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             CCCceEEeec-----CCHHHHHHHHHHhccCCceEecccc
Confidence            2344433221     2236788999999999999886543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.69  E-value=9.8e-05  Score=54.90  Aligned_cols=105  Identities=24%  Similarity=0.246  Sum_probs=75.0

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----
Q psy2408          78 RIMINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----  151 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----  151 (298)
                      ..+++..++++|++||=+|||. |..+..+++..|+ +|+.+|.++..++.+++.    |.   ..++...-.+..    
T Consensus        18 ~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga---~~~i~~~~~~~~~~~~   90 (174)
T d1e3ia2          18 GAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GA---TDCLNPRELDKPVQDV   90 (174)
T ss_dssp             HHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---SEEECGGGCSSCHHHH
T ss_pred             HHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CC---CcccCCccchhhhhhh
Confidence            3456777889999999999997 8888888887786 799999999988888765    32   223322111100    


Q ss_pred             ---CCCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeCC
Q psy2408         152 ---FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDLP  194 (298)
Q Consensus       152 ---~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~~  194 (298)
                         ...+.+|+|+     +....+..+....+.++|| |++++.-..
T Consensus        91 ~~~~~~~G~d~vi-----e~~G~~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2          91 ITELTAGGVDYSL-----DCAGTAQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             HHHHHTSCBSEEE-----ESSCCHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             HhhhhcCCCcEEE-----EecccchHHHHHHHHhhcCCeEEEecCCC
Confidence               1135688874     4445567899999999996 999886543

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.64  E-value=6.8e-05  Score=61.53  Aligned_cols=73  Identities=10%  Similarity=0.101  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhCCCC------CCCeEEEeCCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECC
Q psy2408          74 DKLSRIMINKTSIT------KGQRFIDIGCGFGLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGD  146 (298)
Q Consensus        74 ~~~~~~l~~~~~~~------~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d  146 (298)
                      ..+.+.+++.+.+.      .+.+|||||+|.|.++..+....+ .+++++|+++.+.+..++.+..    +++.++++|
T Consensus        23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~----~~~~ii~~D   98 (322)
T d1i4wa_          23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG----SPLQILKRD   98 (322)
T ss_dssp             HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT----SSCEEECSC
T ss_pred             HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC----CCcEEEeCc
Confidence            45666677766543      467899999999999999998643 4899999999999999887642    468999999


Q ss_pred             CCCC
Q psy2408         147 ALNL  150 (298)
Q Consensus       147 ~~~~  150 (298)
                      +..+
T Consensus        99 ~l~~  102 (322)
T d1i4wa_          99 PYDW  102 (322)
T ss_dssp             TTCH
T ss_pred             hhhc
Confidence            8753

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00019  Score=53.24  Aligned_cols=102  Identities=18%  Similarity=0.291  Sum_probs=70.8

Q ss_pred             HHHHHhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----
Q psy2408          78 RIMINKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----  150 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----  150 (298)
                      ..+.+..++.++.+||-.|+ | .|..+..+++..|+++++++.+++..+.+++.    |..   .++...-.++     
T Consensus        18 ~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~----Ga~---~vi~~~~~~~~~~i~   90 (174)
T d1yb5a2          18 RALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN----GAH---EVFNHREVNYIDKIK   90 (174)
T ss_dssp             HHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS---EEEETTSTTHHHHHH
T ss_pred             HHHHHHhCCCCCCEEEEEeccccccccccccccccCccccccccccccccccccc----Ccc---cccccccccHHHHhh
Confidence            34556677889999999996 4 47778888887899999999998877777643    432   2332211111     


Q ss_pred             -CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         151 -PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       151 -~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                       ......+|+|+....      ...+....++|+|+|+++...
T Consensus        91 ~~t~~~g~d~v~d~~g------~~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2          91 KYVGEKGIDIIIEMLA------NVNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             HHHCTTCEEEEEESCH------HHHHHHHHHHEEEEEEEEECC
T ss_pred             hhhccCCceEEeeccc------HHHHHHHHhccCCCCEEEEEe
Confidence             012467999875321      256788889999999988853

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.41  E-value=0.00092  Score=49.40  Aligned_cols=106  Identities=20%  Similarity=0.198  Sum_probs=69.0

Q ss_pred             HHHHHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC-C---
Q psy2408          77 SRIMINKTSITKGQRFIDIGCGF-GLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN-L---  150 (298)
Q Consensus        77 ~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~-~---  150 (298)
                      ...+++..+++++++||=+|||. |..+..+++..++ +|+++|.++.-++.+++.    |.   ..++...-.+ .   
T Consensus        16 ~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga---~~~i~~~~~d~~~~~   88 (174)
T d1p0fa2          16 YGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GA---TECLNPKDYDKPIYE   88 (174)
T ss_dssp             HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TC---SEEECGGGCSSCHHH
T ss_pred             HHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CC---cEEEcCCCchhHHHH
Confidence            33456777889999999999996 6666677776665 899999999999988765    32   2233221111 0   


Q ss_pred             ---CCCCCCeeEEEecccccccChHHHHHHHhhccc-CCcEEEEEeCC
Q psy2408         151 ---PFDNDSFDGGWFFESIFHMNHSAALNEARRVLK-SGSILTLTDLP  194 (298)
Q Consensus       151 ---~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lk-pgG~l~i~~~~  194 (298)
                         ....+.+|+|+-     .......+......++ ++|.+++....
T Consensus        89 ~~~~~~~~G~d~vid-----~~g~~~~~~~~~~~~~~~~G~~v~vG~~  131 (174)
T d1p0fa2          89 VICEKTNGGVDYAVE-----CAGRIETMMNALQSTYCGSGVTVVLGLA  131 (174)
T ss_dssp             HHHHHTTSCBSEEEE-----CSCCHHHHHHHHHTBCTTTCEEEECCCC
T ss_pred             HHHHhcCCCCcEEEE-----cCCCchHHHHHHHHHHHhcCceEEEEEe
Confidence               012356888753     3344455566666554 56998886654

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=97.34  E-value=0.007  Score=48.48  Aligned_cols=147  Identities=14%  Similarity=0.076  Sum_probs=93.4

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC--CceEEEECCCCCC--------CCCCCCee
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLL--DKVNFLHGDALNL--------PFDNDSFD  158 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~i~~~~~d~~~~--------~~~~~~fD  158 (298)
                      ...|+.+|||.=.-...+....+.+++=+|. +++++.-++.+.+.+..  .+..++..|+.+-        .+..+.--
T Consensus        90 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~pt  168 (297)
T d2uyoa1          90 IRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART  168 (297)
T ss_dssp             CCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred             CCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCE
Confidence            3567779999877666663323567888885 77887777777765543  4567788887652        12234456


Q ss_pred             EEEecccccccChH---HHHHHHhhcccCCcEEEEEeCCCCCCCCChhHHH-HHHHh---hc----------ccCCCCcc
Q psy2408         159 GGWFFESIFHMNHS---AALNEARRVLKSGSILTLTDLPLLSVSKNDNKFK-EYVKK---NI----------HSNFILVE  221 (298)
Q Consensus       159 ~V~~~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~-~~~~~---~~----------~~~~~~~~  221 (298)
                      ++++-+++.+++..   .+|+.+.....||+.+++...+...... ..... .....   ..          .....+..
T Consensus       169 l~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (297)
T d2uyoa1         169 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEW-REQMQLRFRRVSDALGFEQAVDVQELIYHDENRA  247 (297)
T ss_dssp             EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHH-HHHHHHHHHHHHC-----------CCTTCCTTCC
T ss_pred             EEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecccccchh-HHHHHHHHHHHHhhhccccCCChHhhccCCCchh
Confidence            77788889999887   9999999999999998886443222111 01111 11000   00          01123456


Q ss_pred             hHHHHHHhCCCcEEEE
Q psy2408         222 HYPDLLNKSGFELIKI  237 (298)
Q Consensus       222 ~~~~~l~~~Gf~~~~~  237 (298)
                      +...+|...||++...
T Consensus       248 ~~~~~l~~~Gw~~~~~  263 (297)
T d2uyoa1         248 VVADWLNRHGWRATAQ  263 (297)
T ss_dssp             CHHHHHTTTTEEEEEE
T ss_pred             hHHHHHHhCCCEEEEe
Confidence            7889999999986654

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.27  E-value=5.4e-05  Score=55.22  Aligned_cols=97  Identities=13%  Similarity=0.101  Sum_probs=71.8

Q ss_pred             CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecccc
Q psy2408          88 KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESI  166 (298)
Q Consensus        88 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l  166 (298)
                      ++.+|+-||+|. |..+...+..+|+.|+.+|.+++.++..+..+..     ++.+...+-..+.-.-...|+|+..-.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~~~~~l~~~~~~aDivI~aali  105 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVLV  105 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc-----cceeehhhhhhHHHhhccCcEEEEeeec
Confidence            467999999997 8888888888999999999999999988877653     3555554433321112468999987666


Q ss_pred             cccChH-HHHHHHhhcccCCcEEE
Q psy2408         167 FHMNHS-AALNEARRVLKSGSILT  189 (298)
Q Consensus       167 ~~~~~~-~~l~~~~r~LkpgG~l~  189 (298)
                      ---+.| -+-+++.+.+|||..++
T Consensus       106 pG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         106 PGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             TTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             CCcccCeeecHHHHhhcCCCcEEE
Confidence            555555 56678889999998654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.19  E-value=0.00074  Score=50.23  Aligned_cols=101  Identities=16%  Similarity=0.202  Sum_probs=68.7

Q ss_pred             HHHHHhCCCCCCCeEEEeCC-C-CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----
Q psy2408          78 RIMINKTSITKGQRFIDIGC-G-FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----  151 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----  151 (298)
                      ..+.+..++.++++||=.|+ | .|..+..+++..|+++++++-+++..+.+++    .|..   .++...-.++.    
T Consensus        15 ~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~   87 (183)
T d1pqwa_          15 HSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE---YVGDSRSVDFADEIL   87 (183)
T ss_dssp             HHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS---EEEETTCSTHHHHHH
T ss_pred             HHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----cccc---ccccCCccCHHHHHH
Confidence            34456677899999999873 4 3777788888789999999988877776654    3432   23332222210    


Q ss_pred             --CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEE
Q psy2408         152 --FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLT  191 (298)
Q Consensus       152 --~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~  191 (298)
                        .....+|+|+..-.     . ..++.+.++|+++|+++..
T Consensus        88 ~~t~~~g~d~v~d~~g-----~-~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          88 ELTDGYGVDVVLNSLA-----G-EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             HHTTTCCEEEEEECCC-----T-HHHHHHHHTEEEEEEEEEC
T ss_pred             HHhCCCCEEEEEeccc-----c-hHHHHHHHHhcCCCEEEEE
Confidence              12467999986432     2 4667788999999998875

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.0023  Score=47.22  Aligned_cols=102  Identities=15%  Similarity=0.133  Sum_probs=70.6

Q ss_pred             HHHHhCCCCCCCeEEEeCCCC--CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----
Q psy2408          79 IMINKTSITKGQRFIDIGCGF--GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----  151 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----  151 (298)
                      .+.+..+++|+++||=.|+|.  |..+..+++..|++|++++.|++..+.+++.    |.+   .++...-.++.     
T Consensus        19 al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l----Ga~---~vi~~~~~d~~~~v~~   91 (179)
T d1qora2          19 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW---QVINYREEDLVERLKE   91 (179)
T ss_dssp             HHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc----CCe---EEEECCCCCHHHHHHH
Confidence            344556788999999997664  7778888887899999999999998888755    322   23332222210     


Q ss_pred             -CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         152 -FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       152 -~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                       .....+|+|+....-      ..+.....+++|+|++++...
T Consensus        92 ~t~g~g~d~v~d~~g~------~~~~~~~~~l~~~G~~v~~g~  128 (179)
T d1qora2          92 ITGGKKVRVVYDSVGR------DTWERSLDCLQRRGLMVSFGN  128 (179)
T ss_dssp             HTTTCCEEEEEECSCG------GGHHHHHHTEEEEEEEEECCC
T ss_pred             HhCCCCeEEEEeCccH------HHHHHHHHHHhcCCeeeeccc
Confidence             124678988654332      356778899999999877543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.15  E-value=0.0016  Score=48.15  Aligned_cols=104  Identities=18%  Similarity=0.240  Sum_probs=67.8

Q ss_pred             HHHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC-CCCCC-----
Q psy2408          79 IMINKTSITKGQRFIDIGCGF-GLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG-DALNL-----  150 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~-d~~~~-----  150 (298)
                      .+.+..+++++++||=+|||. |..+..+++..| .+|+++|.+++.++.|++.-.       ..++.. +....     
T Consensus        20 Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA-------~~~in~~~~~~~~~~~~   92 (176)
T d1d1ta2          20 AAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA-------TECISPKDSTKPISEVL   92 (176)
T ss_dssp             HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC-------SEEECGGGCSSCHHHHH
T ss_pred             HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC-------cEEECccccchHHHHHH
Confidence            456777889999999999996 666777777677 589999999999999988732       122321 11111     


Q ss_pred             -CCCCCCeeEEEecccccccChHHHHHH-HhhcccCCcEEEEEeCC
Q psy2408         151 -PFDNDSFDGGWFFESIFHMNHSAALNE-ARRVLKSGSILTLTDLP  194 (298)
Q Consensus       151 -~~~~~~fD~V~~~~~l~~~~~~~~l~~-~~r~LkpgG~l~i~~~~  194 (298)
                       ......+|+|+-     ....+..+.. +..+++++|++++.-..
T Consensus        93 ~~~~g~G~d~vi~-----~~g~~~~~~~a~~~~~~~~G~~v~vG~~  133 (176)
T d1d1ta2          93 SEMTGNNVGYTFE-----VIGHLETMIDALASCHMNYGTSVVVGVP  133 (176)
T ss_dssp             HHHHTSCCCEEEE-----CSCCHHHHHHHHTTSCTTTCEEEECSCC
T ss_pred             HHhccccceEEEE-----eCCchHHHHHHHHHhhcCCeEEEEEEcc
Confidence             012356887753     3344444444 44455666998886544

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.09  E-value=0.00083  Score=52.73  Aligned_cols=57  Identities=19%  Similarity=0.134  Sum_probs=49.0

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAK  132 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~  132 (298)
                      ..+.+.+++... .+|..|||.-||+|..+....+ .+.+.+|+|++++.++.|++++.
T Consensus       199 ~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~-~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         199 RDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKK-LGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHc
Confidence            456777777765 6889999999999999877666 79999999999999999999875

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.00  E-value=0.0032  Score=46.63  Aligned_cols=101  Identities=17%  Similarity=0.151  Sum_probs=70.8

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCC--CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-----
Q psy2408          78 RIMINKTSITKGQRFIDIGCGF--GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-----  150 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-----  150 (298)
                      ..+.+..++++|++||-.|++.  |..+..+++..|++|++++-+++..+.+++.    |.   -.++..+-...     
T Consensus        19 ~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga---~~vi~~~~~~~~~~~~   91 (182)
T d1v3va2          19 FGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GF---DAAFNYKTVNSLEEAL   91 (182)
T ss_dssp             HHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC---SEEEETTSCSCHHHHH
T ss_pred             HHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hh---hhhcccccccHHHHHH
Confidence            3455677889999999888865  6777788887899999999999887777654    32   22333222221     


Q ss_pred             -CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEE
Q psy2408         151 -PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLT  191 (298)
Q Consensus       151 -~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~  191 (298)
                       ......+|+|+-.     +. .+.++...++|+|+|++++.
T Consensus        92 ~~~~~~Gvd~v~D~-----vG-~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          92 KKASPDGYDCYFDN-----VG-GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             HHHCTTCEEEEEES-----SC-HHHHHHHGGGEEEEEEEEEC
T ss_pred             HHhhcCCCceeEEe-----cC-chhhhhhhhhccCCCeEEee
Confidence             0123569998642     22 25788999999999998875

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.96  E-value=0.0007  Score=54.98  Aligned_cols=57  Identities=12%  Similarity=0.090  Sum_probs=48.8

Q ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh
Q psy2408          75 KLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKA  133 (298)
Q Consensus        75 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~  133 (298)
                      .+.+.++.... .+|..|||.-||+|..+..... .|.+.+|+|++++.++.|+.++..
T Consensus       238 ~L~~rlI~~~s-~~gdiVlDpF~GSGTT~~AA~~-lgR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         238 KLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAER-ESRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             HHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHHHhhhhcc-cCCCEEEecCCCCcHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHHHh
Confidence            56677776664 6889999999999999887766 799999999999999999988754

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.79  E-value=0.007  Score=44.33  Aligned_cols=103  Identities=17%  Similarity=0.204  Sum_probs=68.9

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC-CCC----
Q psy2408          78 RIMINKTSITKGQRFIDIGCGF-GLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA-LNL----  150 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~-~~~----  150 (298)
                      ..+.+..+++||++||=.|||. |.++..+++..+ ..|+++|.++..++.+++.    |.   ..++..+- .+.    
T Consensus        18 ~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga---~~~i~~~~~~~~~~~~   90 (176)
T d2fzwa2          18 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GA---TECINPQDFSKPIQEV   90 (176)
T ss_dssp             HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TC---SEEECGGGCSSCHHHH
T ss_pred             HHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CC---cEEEeCCchhhHHHHH
Confidence            3455677889999999999984 555666666666 4799999999888888765    32   22332211 111    


Q ss_pred             --CCCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEe
Q psy2408         151 --PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       151 --~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~  192 (298)
                        ....+.+|+|+-     ......+++.+..++++||.+++..
T Consensus        91 ~~~~~~~g~D~vid-----~~G~~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          91 LIEMTDGGVDYSFE-----CIGNVKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             HHHHTTSCBSEEEE-----CSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             HHHHcCCCCcEeee-----cCCCHHHHHHHHHhhcCCceeEEEE
Confidence              011356898864     3344478888999999998776543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.75  E-value=0.0018  Score=51.40  Aligned_cols=59  Identities=14%  Similarity=0.090  Sum_probs=50.3

Q ss_pred             HHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc
Q psy2408          74 DKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE  134 (298)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~  134 (298)
                      ..+.+.+++... .+|..|||.-||+|..+..... .|.+.+|+|+++...+.|++++...
T Consensus       194 ~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~-lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         194 AAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQ-EGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHH-HTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHH-hCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            456677777664 6899999999999999877766 7999999999999999999998753

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.75  E-value=0.00056  Score=50.46  Aligned_cols=102  Identities=20%  Similarity=0.130  Sum_probs=65.0

Q ss_pred             CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC-----CceEEEECCCCCCC--CC------
Q psy2408          88 KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLL-----DKVNFLHGDALNLP--FD------  153 (298)
Q Consensus        88 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-----~~i~~~~~d~~~~~--~~------  153 (298)
                      ++.+||-||+|. |..+...+..+|+.|+++|.++..+++.+......---     ...+...+.+..++  +.      
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~  107 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA  107 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence            456999999997 77888888888999999999998888887664211000     00000000111110  00      


Q ss_pred             ----CCCeeEEEecccccccChH-HHHHHHhhcccCCcEEE
Q psy2408         154 ----NDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILT  189 (298)
Q Consensus       154 ----~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~  189 (298)
                          -...|+|+..-.+.--+.| -.-+++.+.+|||..++
T Consensus       108 l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV  148 (183)
T d1l7da1         108 VLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII  148 (183)
T ss_dssp             HHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred             HHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence                1257999987766655556 56678889999998654

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.69  E-value=0.002  Score=47.52  Aligned_cols=107  Identities=11%  Similarity=0.102  Sum_probs=70.4

Q ss_pred             HHHHHhCCCCCCCeEEEeCCC--CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC-CCCC
Q psy2408          78 RIMINKTSITKGQRFIDIGCG--FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL-PFDN  154 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~  154 (298)
                      ..+.+.-..+++.+||--|++  .|..+..+++..|++|+++.-|++-.+.+++.    |...-+.....+.... ....
T Consensus        21 ~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l----Ga~~vi~~~~~~~~~~~~~~~   96 (176)
T d1xa0a2          21 HRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL----GAKEVLAREDVMAERIRPLDK   96 (176)
T ss_dssp             HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT----TCSEEEECC---------CCS
T ss_pred             HHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc----ccceeeecchhHHHHHHHhhc
Confidence            445566667789999999864  36778888887899999999998888888755    3221111111111111 2235


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +.+|+|+-.-.-      ..+....++|+|+|+++.....
T Consensus        97 ~gvD~vid~vgg------~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2          97 QRWAAAVDPVGG------RTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             CCEEEEEECSTT------TTHHHHHHTEEEEEEEEECSCC
T ss_pred             cCcCEEEEcCCc------hhHHHHHHHhCCCceEEEeecc
Confidence            689988643222      4678899999999999886554

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.62  E-value=0.00042  Score=51.18  Aligned_cols=96  Identities=16%  Similarity=0.187  Sum_probs=65.5

Q ss_pred             HHHhCCCCCCCeEEEeCC-CC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---CCC
Q psy2408          80 MINKTSITKGQRFIDIGC-GF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---FDN  154 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGc-G~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~  154 (298)
                      .+...++.++++||-.|+ |. |..+..+++..|++|++++.+++.++.+++.    |.+   .++  |..+..   ...
T Consensus        19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~l----Ga~---~~i--~~~~~~~~~~~~   89 (171)
T d1iz0a2          19 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL----GAE---EAA--TYAEVPERAKAW   89 (171)
T ss_dssp             HHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT----TCS---EEE--EGGGHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccccc----ccc---eee--ehhhhhhhhhcc
Confidence            345678899999999884 43 7778888887899999999998877777653    432   122  222211   113


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEE
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLT  191 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~  191 (298)
                      ..+|+|+-..     .  ..+....++|+|+|+++..
T Consensus        90 ~g~D~v~d~~-----G--~~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          90 GGLDLVLEVR-----G--KEVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             TSEEEEEECS-----C--TTHHHHHTTEEEEEEEEEC
T ss_pred             cccccccccc-----c--hhHHHHHHHHhcCCcEEEE
Confidence            5699987521     1  2356678899999998875

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.56  E-value=0.079  Score=42.72  Aligned_cols=128  Identities=12%  Similarity=0.068  Sum_probs=77.9

Q ss_pred             eEeeccCCCCCCcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc
Q psy2408          56 HWGYWDESNSKDNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAE  134 (298)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~  134 (298)
                      +.|||-.       ..+.+.+++.++..   .+...|+-+|||.=.....+.... +.+++=+|.-+ .++.=++.+.+.
T Consensus        74 NrGy~~R-------t~~id~~v~~Fl~~---~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~-vi~~K~~~i~~~  142 (328)
T d1rjda_          74 NYGTYLR-------TVGIDAAILEFLVA---NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNE-SVELKNSILRES  142 (328)
T ss_dssp             HHHHHHH-------HHHHHHHHHHHHHH---CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHH-HHHHHHHHHHHS
T ss_pred             hhhHHHH-------HHHHHHHHHHHHHH---CCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHH-HHHHHHHHHHhc
Confidence            4556654       34455666666544   345689999999987777776533 34555555533 332222222110


Q ss_pred             -------C-------------CCCceEEEECCCCCCC---------CCCCCeeEEEecccccccChH---HHHHHHhhcc
Q psy2408         135 -------G-------------LLDKVNFLHGDALNLP---------FDNDSFDGGWFFESIFHMNHS---AALNEARRVL  182 (298)
Q Consensus       135 -------~-------------~~~~i~~~~~d~~~~~---------~~~~~fD~V~~~~~l~~~~~~---~~l~~~~r~L  182 (298)
                             +             ..++.+.+..|+.+++         +..+..-++++-.++.+++..   .+++.+.+..
T Consensus       143 ~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f  222 (328)
T d1rjda_         143 EILRISLGLSKEDTAKSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF  222 (328)
T ss_dssp             HHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC
T ss_pred             hhhhhhccccccccccccccCCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhC
Confidence                   0             1245778888887742         223445688899999999887   7888887776


Q ss_pred             cCCcEEEEEeCCC
Q psy2408         183 KSGSILTLTDLPL  195 (298)
Q Consensus       183 kpgG~l~i~~~~~  195 (298)
                      . +|.+++-++..
T Consensus       223 ~-~~~~i~YE~i~  234 (328)
T d1rjda_         223 S-HGLWISYDPIG  234 (328)
T ss_dssp             S-SEEEEEEEECC
T ss_pred             C-CceEEEeccCC
Confidence            4 56666666653

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.52  E-value=0.004  Score=48.36  Aligned_cols=117  Identities=14%  Similarity=0.034  Sum_probs=81.0

Q ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc-----------------------------------------CCeE
Q psy2408          76 LSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK-----------------------------------------GCRV  114 (298)
Q Consensus        76 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----------------------------------------~~~v  114 (298)
                      +....+.......+..++|--||+|.+.+..+...                                         ...+
T Consensus        38 il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i  117 (249)
T d1o9ga_          38 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSER  117 (249)
T ss_dssp             HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCc
Confidence            33334455555667789999999999988775410                                         0246


Q ss_pred             EEEeCCHHHHHHH---HHHHHhcCCCCceEEEECCCCCCC-----CCCCCeeEEEeccccc-cc------C-hH--HHHH
Q psy2408         115 DGITISKFQQESA---MKTAKAEGLLDKVNFLHGDALNLP-----FDNDSFDGGWFFESIF-HM------N-HS--AALN  176 (298)
Q Consensus       115 ~~vD~s~~~l~~a---~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~V~~~~~l~-~~------~-~~--~~l~  176 (298)
                      .|.|+++.+++.|   ++++...|+...+++.+.|+.+..     .+....++|+++--.- -+      . ..  .++.
T Consensus       118 ~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~  197 (249)
T d1o9ga_         118 FGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLR  197 (249)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHH
Confidence            7888888888888   457888999888999999987642     1235678998853221 11      1 12  7777


Q ss_pred             HHhhcccCCcEEEEEe
Q psy2408         177 EARRVLKSGSILTLTD  192 (298)
Q Consensus       177 ~~~r~LkpgG~l~i~~  192 (298)
                      .+.+++.....++++.
T Consensus       198 ~l~~~~p~~s~~~it~  213 (249)
T d1o9ga_         198 SLASALPAHAVIAVTD  213 (249)
T ss_dssp             HHHHHSCTTCEEEEEE
T ss_pred             HHHccCCCCcEEEEeC
Confidence            7888887667777764

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=96.28  E-value=0.016  Score=47.84  Aligned_cols=97  Identities=14%  Similarity=0.091  Sum_probs=60.7

Q ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHhcCCCC
Q psy2408          67 DNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKAK--------GCRVDGITISKFQQESAMKTAKAEGLLD  138 (298)
Q Consensus        67 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--------~~~v~~vD~s~~~l~~a~~~~~~~~~~~  138 (298)
                      +.++....+....+...++.++..+|+|+|+|+|.++..+....        ..+++.++.|+.+.+.-++.+...   .
T Consensus        58 ~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~---~  134 (365)
T d1zkda1          58 QMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI---R  134 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC---S
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc---c
Confidence            34455555555556666666666799999999999988776642        246899999998777766665432   2


Q ss_pred             ceEEEECCCCCCCCCCCCeeEEEecccccccC
Q psy2408         139 KVNFLHGDALNLPFDNDSFDGGWFFESIFHMN  170 (298)
Q Consensus       139 ~i~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~  170 (298)
                      +++. ..++..+|   ...-+|++++.+..+|
T Consensus       135 ~i~w-~~~~~~~~---~~~g~iiaNE~fDAlP  162 (365)
T d1zkda1         135 NIHW-HDSFEDVP---EGPAVILANEYFDVLP  162 (365)
T ss_dssp             SEEE-ESSGGGSC---CSSEEEEEESSGGGSC
T ss_pred             ccee-ccChhhcc---cCCeEEEecccCcccc
Confidence            3432 33444433   1224566665555544

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=95.98  E-value=0.0041  Score=45.37  Aligned_cols=103  Identities=14%  Similarity=0.161  Sum_probs=66.5

Q ss_pred             HHHhCCCCCCCeEEEeCC--CCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCC--CCC-CCCC
Q psy2408          80 MINKTSITKGQRFIDIGC--GFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDA--LNL-PFDN  154 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~--~~~-~~~~  154 (298)
                      +.+.-..+++.+||--|+  |.|..+..+++..|++|+++.-|++-.+.+++.    |.+. + +...|.  ... ....
T Consensus        15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l----Gad~-v-i~~~~~~~~~~~~~~~   88 (167)
T d1tt7a2          15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GASE-V-ISREDVYDGTLKALSK   88 (167)
T ss_dssp             HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCSE-E-EEHHHHCSSCCCSSCC
T ss_pred             HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh----cccc-e-EeccchhchhhhcccC
Confidence            444444456778887764  247778888887899999999998887877665    3321 1 111111  111 2234


Q ss_pred             CCeeEEEecccccccChHHHHHHHhhcccCCcEEEEEeCC
Q psy2408         155 DSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                      +.+|+|+-.-     .. ..+.+..++|+|+|+++..-..
T Consensus        89 ~gvd~vid~v-----gg-~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          89 QQWQGAVDPV-----GG-KQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             CCEEEEEESC-----CT-HHHHHHHTTEEEEEEEEECCCS
T ss_pred             CCceEEEecC-----cH-HHHHHHHHHhccCceEEEeecc
Confidence            6799886432     11 6778899999999999886444

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.98  E-value=0.033  Score=40.53  Aligned_cols=104  Identities=20%  Similarity=0.238  Sum_probs=66.5

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCC-CHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE-CCCCCC----
Q psy2408          78 RIMINKTSITKGQRFIDIGCGF-GLSGIRLAKAKG-CRVDGITISKFQQESAMKTAKAEGLLDKVNFLH-GDALNL----  150 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~-~d~~~~----  150 (298)
                      ..+.+..++++|++||=+|+|. |..+..+++..+ .+|+++|.++.-.+.+++.    +.   ..++. .+..+.    
T Consensus        18 ~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga---~~~i~~~~~~~~~~~~   90 (176)
T d2jhfa2          18 GSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GA---TECVNPQDYKKPIQEV   90 (176)
T ss_dssp             HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---SEEECGGGCSSCHHHH
T ss_pred             HHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CC---eeEEecCCchhHHHHH
Confidence            3456777889999999999975 445555555555 6999999999988888765    22   22222 122221    


Q ss_pred             --CCCCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEEeC
Q psy2408         151 --PFDNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLTDL  193 (298)
Q Consensus       151 --~~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~~~  193 (298)
                        ....+.+|+|+-     ....+..++.....++++ |.+++...
T Consensus        91 ~~~~~~~G~D~vid-----~~G~~~~~~~a~~~~~~~~g~~~~~~~  131 (176)
T d2jhfa2          91 LTEMSNGGVDFSFE-----VIGRLDTMVTALSCCQEAYGVSVIVGV  131 (176)
T ss_dssp             HHHHTTSCBSEEEE-----CSCCHHHHHHHHHHBCTTTCEEEECSC
T ss_pred             HHHHhcCCCCEEEe-----cCCchhHHHHHHHHHhcCCcceEEecC
Confidence              012357898764     334446667777788876 55555433

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=95.72  E-value=0.0039  Score=46.50  Aligned_cols=104  Identities=9%  Similarity=0.092  Sum_probs=63.3

Q ss_pred             HHHHhCCCCCCCeEEEeCCCC---CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEC---CCCCCC-
Q psy2408          79 IMINKTSITKGQRFIDIGCGF---GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHG---DALNLP-  151 (298)
Q Consensus        79 ~l~~~~~~~~~~~vLDiGcG~---G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~---d~~~~~-  151 (298)
                      .+.+..++.||.+||=+.+|+   |..+..+++..|++++++--++...+...+.+.+.|.+   .++..   |..++. 
T Consensus        19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad---~vi~~~~~~~~~~~~   95 (189)
T d1gu7a2          19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGP   95 (189)
T ss_dssp             HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHH
T ss_pred             HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc---EEEeccccchhHHHH
Confidence            344566788998888884444   55667777778999988855544444444444555543   22322   222210 


Q ss_pred             -------CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEE
Q psy2408         152 -------FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLT  191 (298)
Q Consensus       152 -------~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~  191 (298)
                             .....+|+|+-     .+.. ..+....++|+|+|+++..
T Consensus        96 ~v~~~~~~~g~~vdvv~D-----~vg~-~~~~~~~~~l~~~G~~v~~  136 (189)
T d1gu7a2          96 TIKEWIKQSGGEAKLALN-----CVGG-KSSTGIARKLNNNGLMLTY  136 (189)
T ss_dssp             HHHHHHHHHTCCEEEEEE-----SSCH-HHHHHHHHTSCTTCEEEEC
T ss_pred             HHHHHHhhccCCceEEEE-----CCCc-chhhhhhhhhcCCcEEEEE
Confidence                   01356888863     2332 4556778999999998875

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.46  E-value=0.047  Score=39.18  Aligned_cols=84  Identities=19%  Similarity=0.161  Sum_probs=52.8

Q ss_pred             CeEEEeCCCC-C-HHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccc
Q psy2408          90 QRFIDIGCGF-G-LSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIF  167 (298)
Q Consensus        90 ~~vLDiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~  167 (298)
                      ++|.=||+|. | .++..+.+ .|.+|+++|.+++.++.+++.    ++   +.....+...+    ...|+|+..    
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~-~g~~V~~~d~~~~~~~~a~~~----~~---~~~~~~~~~~~----~~~DiIila----   64 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRR-RGHYLIGVSRQQSTCEKAVER----QL---VDEAGQDLSLL----QTAKIIFLC----   64 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGG----TTCSEEEEC----
T ss_pred             CEEEEEeecHHHHHHHHHHHH-CCCEEEEEECCchHHHHHHHh----hc---cceeeeecccc----ccccccccc----
Confidence            3677788874 3 23444444 588999999999888776543    32   22222232222    467888753    


Q ss_pred             ccChH---HHHHHHhhcccCCcEEEE
Q psy2408         168 HMNHS---AALNEARRVLKSGSILTL  190 (298)
Q Consensus       168 ~~~~~---~~l~~~~r~LkpgG~l~i  190 (298)
                       ++..   ..++++...++++..++-
T Consensus        65 -vp~~~~~~vl~~l~~~l~~~~iv~~   89 (165)
T d2f1ka2          65 -TPIQLILPTLEKLIPHLSPTAIVTD   89 (165)
T ss_dssp             -SCHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             -CcHhhhhhhhhhhhhhcccccceee
Confidence             2333   888999998888875543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.11  E-value=0.083  Score=38.17  Aligned_cols=102  Identities=16%  Similarity=0.203  Sum_probs=63.2

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCCC-HHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----
Q psy2408          78 RIMINKTSITKGQRFIDIGCGFG-LSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----  151 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~G-~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----  151 (298)
                      ..+.+..+++++++||=+|||.+ ..+..++... +..|+++|.+++.++.+++.    |.   .+++..+-.+..    
T Consensus        18 ~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~----GA---d~~in~~~~~~~~~~~   90 (175)
T d1cdoa2          18 GAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----GA---TDFVNPNDHSEPISQV   90 (175)
T ss_dssp             HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---CEEECGGGCSSCHHHH
T ss_pred             HHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc----CC---cEEEcCCCcchhHHHH
Confidence            34556778899999999999984 4444455544 45899999999988888765    32   233332211110    


Q ss_pred             ---CCCCCeeEEEecccccccChHHHHHHHhhcccCC-cEEEEE
Q psy2408         152 ---FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSG-SILTLT  191 (298)
Q Consensus       152 ---~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~Lkpg-G~l~i~  191 (298)
                         .....+|+|+     +.......+......++++ |.+++.
T Consensus        91 ~~~~~~~G~d~vi-----d~~G~~~~~~~a~~~~~~g~~~~~~~  129 (175)
T d1cdoa2          91 LSKMTNGGVDFSL-----ECVGNVGVMRNALESCLKGWGVSVLV  129 (175)
T ss_dssp             HHHHHTSCBSEEE-----ECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             HHhhccCCcceee-----eecCCHHHHHHHHHHhhCCCcceeEE
Confidence               1134688874     3344445666777776666 544443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.68  E-value=0.08  Score=38.09  Aligned_cols=88  Identities=15%  Similarity=0.140  Sum_probs=53.9

Q ss_pred             eEEEeCCCC-C-HHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccccc
Q psy2408          91 RFIDIGCGF-G-LSGIRLAKA-KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFESIF  167 (298)
Q Consensus        91 ~vLDiGcG~-G-~~~~~l~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~l~  167 (298)
                      +|+=||||. | .++..|.+. +..+|+++|.+++.++.+++.    +.   +.....+....  .....|+|+..--..
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~~~~~~--~~~~~dlIila~p~~   73 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKV--EDFSPDFVMLSSPVR   73 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGG--GGTCCSEEEECSCHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc---chhhhhhhhhh--hccccccccccCCch
Confidence            588899986 3 344455443 235899999999999888755    22   22222232222  124578887533221


Q ss_pred             ccChH-HHHHHHhhcccCCcEEEE
Q psy2408         168 HMNHS-AALNEARRVLKSGSILTL  190 (298)
Q Consensus       168 ~~~~~-~~l~~~~r~LkpgG~l~i  190 (298)
                         .- ..+.++...++++..+.-
T Consensus        74 ---~~~~vl~~l~~~~~~~~ii~d   94 (171)
T d2g5ca2          74 ---TFREIAKKLSYILSEDATVTD   94 (171)
T ss_dssp             ---HHHHHHHHHHHHSCTTCEEEE
T ss_pred             ---hhhhhhhhhhccccccccccc
Confidence               12 788899999988865443

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.66  E-value=0.11  Score=38.15  Aligned_cols=100  Identities=18%  Similarity=0.122  Sum_probs=62.7

Q ss_pred             HHHhCCCCCC--CeEEEeC--CCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC---
Q psy2408          80 MINKTSITKG--QRFIDIG--CGFGLSGIRLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP---  151 (298)
Q Consensus        80 l~~~~~~~~~--~~vLDiG--cG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~---  151 (298)
                      +.+..+++++  .+||-.|  .|.|..+..+++..|+ .|++++.+++........   .+.   ..++...-.++.   
T Consensus        20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~---~ga---d~vi~~~~~~~~~~~   93 (187)
T d1vj1a2          20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSE---LGF---DAAVNYKTGNVAEQL   93 (187)
T ss_dssp             HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHH---SCC---SEEEETTSSCHHHHH
T ss_pred             HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhc---ccc---eEEeeccchhHHHHH
Confidence            4455556666  7899877  3469999999998787 577777776554443322   232   223332221210   


Q ss_pred             --CCCCCeeEEEecccccccChHHHHHHHhhcccCCcEEEEE
Q psy2408         152 --FDNDSFDGGWFFESIFHMNHSAALNEARRVLKSGSILTLT  191 (298)
Q Consensus       152 --~~~~~fD~V~~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~  191 (298)
                        ...+.+|+|+-.-     . ...+....++|+|+|+++..
T Consensus        94 ~~~~~~GvDvv~D~v-----G-g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          94 REACPGGVDVYFDNV-----G-GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             HHHCTTCEEEEEESS-----C-HHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHhccCceEEEecC-----C-chhHHHHhhhccccccEEEe
Confidence              1135699986322     2 15678899999999999875

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.63  E-value=0.063  Score=36.95  Aligned_cols=85  Identities=19%  Similarity=0.118  Sum_probs=54.0

Q ss_pred             CeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEEe
Q psy2408          90 QRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGWF  162 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~  162 (298)
                      ++|+=+|+  |.++..+++.   .|..|+.+|.+++.++.+.+.+       .+.++.+|..+..    ..-+..|.+++
T Consensus         1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~   71 (132)
T d1lssa_           1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAGIEDADMYIA   71 (132)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhcChhhhhhhcc
Confidence            35666776  5666666654   4789999999999888776542       3678999988742    12356787776


Q ss_pred             cccccccChH---HHHHHHhhcccCCcEE
Q psy2408         163 FESIFHMNHS---AALNEARRVLKSGSIL  188 (298)
Q Consensus       163 ~~~l~~~~~~---~~l~~~~r~LkpgG~l  188 (298)
                      .     .++.   -+...+.+.+.+.-.+
T Consensus        72 ~-----t~~d~~N~~~~~~~k~~~~~~iI   95 (132)
T d1lssa_          72 V-----TGKEEVNLMSSLLAKSYGINKTI   95 (132)
T ss_dssp             C-----CSCHHHHHHHHHHHHHTTCCCEE
T ss_pred             c-----CCcHHHHHHHHHHHHHcCCceEE
Confidence            3     2222   3334455556666443

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.11  Score=37.69  Aligned_cols=95  Identities=15%  Similarity=0.230  Sum_probs=61.3

Q ss_pred             CCCCCeEEEeCCC--CCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCC--CCCCCCeeEEE
Q psy2408          86 ITKGQRFIDIGCG--FGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNL--PFDNDSFDGGW  161 (298)
Q Consensus        86 ~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~V~  161 (298)
                      .+++.+||-.|+.  .|..+..+++..|++|+++.-+++..+.+++.    |.   ..++..+-.+.  .+....+|.|+
T Consensus        29 ~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l----Ga---d~vi~~~~~~~~~~l~~~~~~~vv  101 (177)
T d1o89a2          29 RPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL----GA---SRVLPRDEFAESRPLEKQVWAGAI  101 (177)
T ss_dssp             CGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TE---EEEEEGGGSSSCCSSCCCCEEEEE
T ss_pred             CCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh----cc---ccccccccHHHHHHHHhhcCCeeE
Confidence            3344578866532  35667777777899999999999888877655    22   23333322111  23346678764


Q ss_pred             ecccccccChHHHHHHHhhcccCCcEEEEEeC
Q psy2408         162 FFESIFHMNHSAALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       162 ~~~~l~~~~~~~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      -     .+.. ..+....+.|+++|+++..-.
T Consensus       102 D-----~Vgg-~~~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         102 D-----TVGD-KVLAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             E-----SSCH-HHHHHHHHTEEEEEEEEECCC
T ss_pred             E-----Ecch-HHHHHHHHHhccccceEeecc
Confidence            2     2222 567889999999999988643

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.2  Score=39.06  Aligned_cols=102  Identities=15%  Similarity=0.054  Sum_probs=71.4

Q ss_pred             CCeEEEeCCCCCHHHHHHHHh----cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--------C--CC
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKA----KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--------F--DN  154 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~----~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~--~~  154 (298)
                      |++|.=|-.|++.++..+++.    .+++|+.++.+++.++.+.+.+...+  .++.++.+|+.+..        .  ..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            667755544555565555543    37899999999999999988888766  35889999998742        0  12


Q ss_pred             CCeeEEEecccccccCh-------------------H-HHHHHHhhcccCCcEEEEEe
Q psy2408         155 DSFDGGWFFESIFHMNH-------------------S-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~-------------------~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      +..|+++.+..+.....                   + .+.+.+...|+++|+++...
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            57999998766543211                   1 45667788888999877653

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.22  Score=38.40  Aligned_cols=79  Identities=18%  Similarity=0.109  Sum_probs=58.9

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FDN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  154 (298)
                      +++.+|-.|++.| ++..+++.   .|++|+.+|.+++.++.+.+.+...+.+.++.++.+|+.+..          -..
T Consensus         9 k~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           9 RDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            4678998997765 44445544   489999999999999999888888776667889999998731          012


Q ss_pred             CCeeEEEeccccc
Q psy2408         155 DSFDGGWFFESIF  167 (298)
Q Consensus       155 ~~fD~V~~~~~l~  167 (298)
                      +..|+++.+....
T Consensus        88 g~iD~lVnnAg~~  100 (257)
T d1xg5a_          88 SGVDICINNAGLA  100 (257)
T ss_dssp             CCCSEEEECCCCC
T ss_pred             CCCCEEEeccccc
Confidence            5789988765543

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=93.06  E-value=0.27  Score=38.97  Aligned_cols=67  Identities=18%  Similarity=0.134  Sum_probs=49.3

Q ss_pred             CeEEEeCCCCCHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC-CCCeeEEEecc
Q psy2408          90 QRFIDIGCGFGLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD-NDSFDGGWFFE  164 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~  164 (298)
                      ++|||+-||.|.+..-+-+ .|.+ +.++|+++...+..+.++.       -.++..|+.++... -...|+++...
T Consensus         1 mk~~~lF~G~Gg~~~gl~~-aG~~~~~a~e~d~~a~~~~~~N~~-------~~~~~~Di~~~~~~~~~~~dll~~g~   69 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQK-AGFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDEFPKCDGIIGGP   69 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHH-HTCEEEEEEECCHHHHHHHHHHCC-------SEEEESCTTTSCGGGSCCCSEEEECC
T ss_pred             CeEEEeCcCcCHHHHHHHH-CCCEEEEEEeCCHHHHHHHHHHCC-------CCCccCChhhCCHhHcccccEEeecc
Confidence            4799999999999887766 4665 5599999987777666531       35678999887421 24689998643

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=92.53  E-value=0.26  Score=40.59  Aligned_cols=51  Identities=16%  Similarity=0.116  Sum_probs=42.7

Q ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhcCC
Q psy2408          86 ITKGQRFIDIGCGFGLSGIRLAKAK---GCRVDGITISKFQQESAMKTAKAEGL  136 (298)
Q Consensus        86 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~l~~a~~~~~~~~~  136 (298)
                      +.++..++|+|+-.|..+..++...   ..+|+++++++...+..++++.....
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            5677899999999999988877653   35899999999999999998876543

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=92.06  E-value=0.17  Score=40.41  Aligned_cols=68  Identities=24%  Similarity=0.129  Sum_probs=50.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC-CCCeeEEEecc
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKAKGCR-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFD-NDSFDGGWFFE  164 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~V~~~~  164 (298)
                      .+.+|||+-||.|.++.-+.+ .|.+ +.++|+++..++..+.+...        ..+.|+.++... -..+|+++...
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~-aG~~~v~a~e~d~~a~~~~~~N~~~--------~~~~Di~~~~~~~~~~~Dll~ggp   79 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALES-CGAECVYSNEWDKYAQEVYEMNFGE--------KPEGDITQVNEKTIPDHDILCAGF   79 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHH-TTCEEEEEECCCHHHHHHHHHHHSC--------CCBSCGGGSCGGGSCCCSEEEEEC
T ss_pred             CCCeEEEECccccHHHHHHHH-CCCeEEEEEeCCHHHHHHHHHHCCC--------CCcCchhcCchhhcceeeeeeccc
Confidence            578999999999999988876 5664 56799999998888877642        124777766321 24689998643

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.57  E-value=0.68  Score=35.24  Aligned_cols=78  Identities=19%  Similarity=0.095  Sum_probs=56.7

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FDN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  154 (298)
                      .|..+|--|++.| ++..++..   .|++|+.+|.+++.++...+.+...+  .++.++.+|+.+..          -..
T Consensus         6 ~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           6 TGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            5778887787665 33444443   48999999999999998888887665  46889999998841          123


Q ss_pred             CCeeEEEecccccc
Q psy2408         155 DSFDGGWFFESIFH  168 (298)
Q Consensus       155 ~~fD~V~~~~~l~~  168 (298)
                      +..|+++.+..+..
T Consensus        83 g~idilinnag~~~   96 (244)
T d1yb1a_          83 GDVSILVNNAGVVY   96 (244)
T ss_dssp             CCCSEEEECCCCCC
T ss_pred             CCCceeEeeccccc
Confidence            57899887665543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=90.14  E-value=0.45  Score=32.29  Aligned_cols=87  Identities=15%  Similarity=0.036  Sum_probs=50.8

Q ss_pred             EEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC----CCCCeeEEEecc
Q psy2408          92 FIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF----DNDSFDGGWFFE  164 (298)
Q Consensus        92 vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD~V~~~~  164 (298)
                      ++=+|+  |.++..+++.   .|..|+.+|.+++.++.++..    +    ...+.+|..+...    .-...|.|++..
T Consensus         3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~----~----~~~~~gd~~~~~~l~~a~i~~a~~vi~~~   72 (134)
T d2hmva1           3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY----A----THAVIANATEENELLSLGIRNFEYVIVAI   72 (134)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT----C----SEEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh----C----CcceeeecccchhhhccCCccccEEEEEc
Confidence            444555  6666666655   488999999999888876422    2    4577888877431    123567665422


Q ss_pred             cccccChH-HHHHHHhhcccCCcEEEEE
Q psy2408         165 SIFHMNHS-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       165 ~l~~~~~~-~~l~~~~r~LkpgG~l~i~  191 (298)
                      .   -.+. ..+-...+-+.|...++..
T Consensus        73 ~---~~~~~~~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          73 G---ANIQASTLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             C---SCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             C---chHHhHHHHHHHHHHcCCCcEEee
Confidence            1   1112 4444444445566666553

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=90.12  E-value=0.76  Score=35.24  Aligned_cols=78  Identities=17%  Similarity=0.093  Sum_probs=55.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FDN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  154 (298)
                      .|+++|--|++.| ++..+++.   .|++|..+|.+++.++.+.+.+...+...++.++.+|+.+..          -.-
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGSG-LGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            4678888887654 44444433   489999999999999888887766655557888999998742          012


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +..|+++.+..+
T Consensus        82 G~iDiLVnnAG~   93 (258)
T d1iy8a_          82 GRIDGFFNNAGI   93 (258)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            578998876543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=89.72  E-value=1.8  Score=30.59  Aligned_cols=94  Identities=16%  Similarity=0.083  Sum_probs=52.4

Q ss_pred             CeEEEeCCCC-CHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEE------EECCCCCCCCCCCCeeEEE
Q psy2408          90 QRFIDIGCGF-GLS-GIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNF------LHGDALNLPFDNDSFDGGW  161 (298)
Q Consensus        90 ~~vLDiGcG~-G~~-~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~------~~~d~~~~~~~~~~fD~V~  161 (298)
                      ++|-=||+|. |.. +..|++ .|..|+++|.++..++..+..-......+....      ...|..+.   -...|+|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~aD~ii   77 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLAL-KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---VKDADVIL   77 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---HTTCSEEE
T ss_pred             CEEEEECccHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH---hcCCCEEE
Confidence            4677788876 333 333333 589999999999888777654210000000001      11111110   14578887


Q ss_pred             ecccccccChH-HHHHHHhhcccCCcEEEE
Q psy2408         162 FFESIFHMNHS-AALNEARRVLKSGSILTL  190 (298)
Q Consensus       162 ~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i  190 (298)
                      ..--   .... ..++++...++++..+++
T Consensus        78 i~v~---~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          78 IVVP---AIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             ECSC---GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             EEEc---hhHHHHHHHHhhhccCCCCEEEE
Confidence            5321   1122 899999999999876554

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.53  E-value=0.3  Score=35.86  Aligned_cols=99  Identities=14%  Similarity=0.077  Sum_probs=58.5

Q ss_pred             CeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc-------CCC--------------CceEEEECCC
Q psy2408          90 QRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE-------GLL--------------DKVNFLHGDA  147 (298)
Q Consensus        90 ~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~-------~~~--------------~~i~~~~~d~  147 (298)
                      .+|--||+|+ |.-...+....|..|+.+|.+++.++.+++++...       +..              .++.+ ..|.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~-~~d~   83 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-STDA   83 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-ESCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc-cchh
Confidence            4788899987 33322233336899999999999999888875521       211              01221 1121


Q ss_pred             CCCCCCCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         148 LNLPFDNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       148 ~~~~~~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      .+ .  -...|+|+= .+.+.+.-. ++++++.++++++..|.-.+.
T Consensus        84 ~~-a--~~~ad~ViE-av~E~l~~K~~v~~~l~~~~~~~~ilasnTS  126 (192)
T d1f0ya2          84 AS-V--VHSTDLVVE-AIVENLKVKNELFKRLDKFAAEHTIFASNTS  126 (192)
T ss_dssp             HH-H--TTSCSEEEE-CCCSCHHHHHHHHHHHTTTSCTTCEEEECCS
T ss_pred             Hh-h--hcccceehh-hcccchhHHHHHHHHHhhhcccCceeeccCc
Confidence            11 0  134566642 223333334 999999999999977655433

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.41  E-value=0.9  Score=34.74  Aligned_cols=102  Identities=15%  Similarity=0.033  Sum_probs=69.3

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEE-eCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGI-TISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FD  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~v-D~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~  153 (298)
                      .|++||=.| |++.++..+++.   .|++|+.. +.++..++.+.+.+...+  .++.++.+|+.+..          ..
T Consensus         5 ~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           5 AGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHHH
Confidence            578889777 556666666654   37888764 567777888888887766  46889999998731          11


Q ss_pred             CCCeeEEEecccccccCh-------------------H-HHHHHHhhcccCCcEEEEEe
Q psy2408         154 NDSFDGGWFFESIFHMNH-------------------S-AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~~~~-------------------~-~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .+..|+++.+....+..+                   + .+.+.+...++.+|.+++..
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~  140 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS  140 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence            257899987666544332                   2 56666777777777766543

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.99  E-value=0.13  Score=41.32  Aligned_cols=70  Identities=17%  Similarity=0.151  Sum_probs=49.7

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhcCC--e-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC---CCCCeeEEEe
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAKGC--R-VDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPF---DNDSFDGGWF  162 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~~~--~-v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~fD~V~~  162 (298)
                      +.+|+|+-||.|.++.-+-. .|.  + +.++|+++..++..+.+..      ...+++.|+.++..   +...+|+++.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~-aG~~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~~~~~~~Dll~g   74 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRE-SCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILM   74 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHH-HTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred             CCEEEEcCcCccHHHHHHHH-cCCCCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhHcCCCCccEEEe
Confidence            46899999999999877755 353  3 6789999988877766542      35567788877632   2236899886


Q ss_pred             ccc
Q psy2408         163 FES  165 (298)
Q Consensus       163 ~~~  165 (298)
                      ..-
T Consensus        75 gpP   77 (343)
T d1g55a_          75 SPP   77 (343)
T ss_dssp             CCC
T ss_pred             ecc
Confidence            443

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=88.94  E-value=0.95  Score=34.66  Aligned_cols=75  Identities=16%  Similarity=0.117  Sum_probs=54.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FDN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  154 (298)
                      .|+++|-.|++. .++..+++.   .|++|+.+|.+++.++.+.+.+...+  .++..+.+|+.+..          -.-
T Consensus         4 ~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           4 NGKVCLVTGAGG-NIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            577888778655 444445443   48999999999999999888887665  45888999988731          012


Q ss_pred             CCeeEEEeccc
Q psy2408         155 DSFDGGWFFES  165 (298)
Q Consensus       155 ~~fD~V~~~~~  165 (298)
                      +..|+++.+..
T Consensus        81 g~iDilVnnaG   91 (260)
T d1zema1          81 GKIDFLFNNAG   91 (260)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCeehhhhc
Confidence            57898886543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=88.91  E-value=1.9  Score=34.20  Aligned_cols=78  Identities=17%  Similarity=0.124  Sum_probs=52.3

Q ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-CC--CCCee
Q psy2408          85 SITKGQRFIDIGCGFGLSGIRLAKAK---GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-FD--NDSFD  158 (298)
Q Consensus        85 ~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~--~~~fD  158 (298)
                      -+++|.+||=.| |+|.++..+++.+   |.+|+++..+..-....+.............++.+|+.+.. +.  -...|
T Consensus         7 ~~~~gk~VlVTG-~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   85 (342)
T d1y1pa1           7 VLPEGSLVLVTG-ANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAA   85 (342)
T ss_dssp             SSCTTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred             CCCCcCEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccch
Confidence            356789999888 5699999888763   88999988887766665555444444344566778887642 11  13467


Q ss_pred             EEEec
Q psy2408         159 GGWFF  163 (298)
Q Consensus       159 ~V~~~  163 (298)
                      .|+..
T Consensus        86 ~v~~~   90 (342)
T d1y1pa1          86 GVAHI   90 (342)
T ss_dssp             EEEEC
T ss_pred             hhhhh
Confidence            76644

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=88.80  E-value=1.1  Score=34.29  Aligned_cols=78  Identities=14%  Similarity=0.059  Sum_probs=56.2

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----------CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----------FD  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~  153 (298)
                      .|++||=.|+.. .++..+++.   .|++|+.++.+++.++.+.+.+...+  .++.++..|+.+..           .-
T Consensus         5 ~gK~alITGas~-GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           5 KGTTALVTGGSK-GIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             TTCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHHHh
Confidence            578899999764 454445443   48999999999999998888887766  35788899998742           11


Q ss_pred             CCCeeEEEecccccc
Q psy2408         154 NDSFDGGWFFESIFH  168 (298)
Q Consensus       154 ~~~fD~V~~~~~l~~  168 (298)
                      .+..|+++.+..+..
T Consensus        82 ~g~idilinnag~~~   96 (258)
T d1ae1a_          82 DGKLNILVNNAGVVI   96 (258)
T ss_dssp             TSCCCEEEECCCCCC
T ss_pred             CCCcEEEeccccccc
Confidence            256888887554433

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.79  E-value=0.056  Score=42.23  Aligned_cols=54  Identities=19%  Similarity=0.068  Sum_probs=38.0

Q ss_pred             eEEEECCCCCC--CCCCCCeeEEEeccccc-----------ccChH-HHHHHHhhcccCCcEEEEEeC
Q psy2408         140 VNFLHGDALNL--PFDNDSFDGGWFFESIF-----------HMNHS-AALNEARRVLKSGSILTLTDL  193 (298)
Q Consensus       140 i~~~~~d~~~~--~~~~~~fD~V~~~~~l~-----------~~~~~-~~l~~~~r~LkpgG~l~i~~~  193 (298)
                      -.++++|..+.  .++++++|+|+..--..           ++... ..+.++.|+|+|+|.+++...
T Consensus         5 ~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~   72 (279)
T d1eg2a_           5 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG   72 (279)
T ss_dssp             EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence            34677787664  56789999998743321           12223 778899999999999988643

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=88.46  E-value=0.69  Score=31.14  Aligned_cols=83  Identities=13%  Similarity=0.170  Sum_probs=55.0

Q ss_pred             CCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEEecccccccCh
Q psy2408          97 CGFGLSGIRLAKAK-GCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGWFFESIFHMNH  171 (298)
Q Consensus        97 cG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~~~~l~~~~~  171 (298)
                      ||.|..+..+++.+ +..++.+|.++...+..+..        .+.++.+|..+..    ..-++.+.+++..     ++
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~--------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----~~   72 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS--------GANFVHGDPTRVSDLEKANVRGARAVIVNL-----ES   72 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT--------TCEEEESCTTSHHHHHHTTCTTCSEEEECC-----SS
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc--------CccccccccCCHHHHHHhhhhcCcEEEEec-----cc
Confidence            46678888888874 56789999999877665422        3788999987731    2235677776522     22


Q ss_pred             H---HHHHHHhhcccCCcEEEEEe
Q psy2408         172 S---AALNEARRVLKSGSILTLTD  192 (298)
Q Consensus       172 ~---~~l~~~~r~LkpgG~l~i~~  192 (298)
                      .   -.+....+.+.|...++...
T Consensus        73 d~~n~~~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          73 DSETIHCILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             HHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred             hhhhHHHHHHHHHHCCCceEEEEE
Confidence            3   44555566778887766653

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.98  E-value=0.93  Score=34.56  Aligned_cols=83  Identities=14%  Similarity=0.030  Sum_probs=58.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FDN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  154 (298)
                      .|+.+|=-|++. .++..+++.   .|++|+.+|.+++.++.+...+.......++.++.+|+.+..          -.-
T Consensus         2 ~GKvalITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQ-GIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            367788888654 455555554   489999999999988888777765433456889999998742          012


Q ss_pred             CCeeEEEecccccccCh
Q psy2408         155 DSFDGGWFFESIFHMNH  171 (298)
Q Consensus       155 ~~fD~V~~~~~l~~~~~  171 (298)
                      +..|+++.+.......+
T Consensus        81 G~iDilVnnAg~~~~~~   97 (254)
T d2gdza1          81 GRLDILVNNAGVNNEKN   97 (254)
T ss_dssp             SCCCEEEECCCCCCSSS
T ss_pred             CCcCeeccccccccccc
Confidence            57899998776655443

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.56  E-value=1.6  Score=33.03  Aligned_cols=74  Identities=18%  Similarity=0.150  Sum_probs=50.6

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC------CCCCCee
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP------FDNDSFD  158 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~fD  158 (298)
                      .|+++|-.|++.| ++..+++.   .|++|+.+|.+++.++...+..      .++..++.|+.+..      -.-++.|
T Consensus         6 ~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~iD   78 (244)
T d1pr9a_           6 AGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPVD   78 (244)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCCce
Confidence            5789999996654 44555444   4899999999998777665442      24778888987631      1126799


Q ss_pred             EEEecccccc
Q psy2408         159 GGWFFESIFH  168 (298)
Q Consensus       159 ~V~~~~~l~~  168 (298)
                      +++.+..+..
T Consensus        79 ilVnnAg~~~   88 (244)
T d1pr9a_          79 LLVNNAAVAL   88 (244)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEecccccc
Confidence            9987655433

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.54  E-value=1.2  Score=34.42  Aligned_cols=77  Identities=18%  Similarity=0.132  Sum_probs=55.9

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCCC-----C-----C
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGDALNLP-----F-----D  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d~~~~~-----~-----~  153 (298)
                      .|+++|=-|++.| ++..+++.   .|++|+.+|.+++.++.+.+.+...+.+ .++.++.+|+.+..     +     .
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            4678888886654 45555544   4899999999999999888888776643 46889999998742     0     1


Q ss_pred             CCCeeEEEeccc
Q psy2408         154 NDSFDGGWFFES  165 (298)
Q Consensus       154 ~~~fD~V~~~~~  165 (298)
                      -+..|+++.+..
T Consensus        82 ~G~iDilVnnAG   93 (274)
T d1xhla_          82 FGKIDILVNNAG   93 (274)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCceEEEeecc
Confidence            257899987644

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=87.35  E-value=1.5  Score=30.98  Aligned_cols=76  Identities=17%  Similarity=0.141  Sum_probs=46.8

Q ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHH-HHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCC
Q psy2408          78 RIMINKTSITKGQRFIDIGCGFGLSGI-RLAKAKGC-RVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDND  155 (298)
Q Consensus        78 ~~l~~~~~~~~~~~vLDiGcG~G~~~~-~l~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  155 (298)
                      ..+++...+.++.+||=+|||--.-+. +.....|. +++.+.-+++..+...+.+   +    ...+  +  .  ....
T Consensus         6 ~~~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~---~----~~~~--~--~--~~~~   72 (167)
T d1npya1           6 VKLIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY---G----YAYI--N--S--LENQ   72 (167)
T ss_dssp             HHHHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH---T----CEEE--S--C--CTTC
T ss_pred             HHHHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh---h----hhhh--h--c--cccc
Confidence            346677777788899999998644433 33333564 7999999987655554443   1    1221  1  1  1235


Q ss_pred             CeeEEEecccc
Q psy2408         156 SFDGGWFFESI  166 (298)
Q Consensus       156 ~fD~V~~~~~l  166 (298)
                      .+|+|+..-.+
T Consensus        73 ~~DliINaTpi   83 (167)
T d1npya1          73 QADILVNVTSI   83 (167)
T ss_dssp             CCSEEEECSST
T ss_pred             chhhheecccc
Confidence            68998865444

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=87.07  E-value=1.3  Score=33.84  Aligned_cols=77  Identities=16%  Similarity=-0.017  Sum_probs=55.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FDN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  154 (298)
                      .|+++|--|++ +.++..+++.   .|++|+.+|.+++.++.+.+.+...+  .++.++.+|+.+..          -.-
T Consensus        10 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          10 DGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            57788866654 5555556554   48999999999999998888887765  46888999998731          011


Q ss_pred             CCeeEEEeccccc
Q psy2408         155 DSFDGGWFFESIF  167 (298)
Q Consensus       155 ~~fD~V~~~~~l~  167 (298)
                      +..|+++.+....
T Consensus        87 g~iDilvnnAG~~   99 (255)
T d1fmca_          87 GKVDILVNNAGGG   99 (255)
T ss_dssp             SSCCEEEECCCCC
T ss_pred             CCCCEeeeCCcCC
Confidence            5789888765443

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=87.07  E-value=1.5  Score=33.46  Aligned_cols=77  Identities=13%  Similarity=0.021  Sum_probs=55.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--------C---C
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--------F---D  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~---~  153 (298)
                      .|+++|--|++. .++..+++.   .|++|+.+|.+++.++.+.+.+...+  .++.++.+|+.+..        .   -
T Consensus         7 ~GK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           7 EGCTALVTGGSR-GIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TTCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            577888888665 455555544   48999999999999998888887665  46788899987631        0   1


Q ss_pred             CCCeeEEEeccccc
Q psy2408         154 NDSFDGGWFFESIF  167 (298)
Q Consensus       154 ~~~fD~V~~~~~l~  167 (298)
                      .+..|+++.+..+.
T Consensus        84 ~~~idilvnnAG~~   97 (259)
T d2ae2a_          84 HGKLNILVNNAGIV   97 (259)
T ss_dssp             TTCCCEEEECCCCC
T ss_pred             CCCceEEEECCcee
Confidence            24689998765543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=87.01  E-value=1.1  Score=31.59  Aligned_cols=119  Identities=15%  Similarity=0.029  Sum_probs=62.9

Q ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHh---cCC-eEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q psy2408          67 DNFAQGSDKLSRIMINKTSITKGQRFIDIGCGFGLSGIRLAKA---KGC-RVDGITISKFQQESAMKTAKAEGLLDKVNF  142 (298)
Q Consensus        67 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~  142 (298)
                      .++..+.-.+....+..   -.+.+||=||.|  ..+..+++.   .+. .++.+.-+.+-.+..   ....+    ...
T Consensus         5 vSv~~aAv~la~~~~~~---l~~~~ilviGaG--~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l---~~~~~----~~~   72 (159)
T d1gpja2           5 VSIGSAAVELAERELGS---LHDKTVLVVGAG--EMGKTVAKSLVDRGVRAVLVANRTYERAVEL---ARDLG----GEA   72 (159)
T ss_dssp             CSHHHHHHHHHHHHHSC---CTTCEEEEESCC--HHHHHHHHHHHHHCCSEEEEECSSHHHHHHH---HHHHT----CEE
T ss_pred             ccHHHHHHHHHHHHhCC---cccCeEEEECCC--HHHHHHHHHHHhcCCcEEEEEcCcHHHHHHH---HHhhh----ccc
Confidence            34444544555555543   357799999875  444444433   465 699999886443333   32222    222


Q ss_pred             EECCCCCCCCCCCCeeEEEeccccc-ccChHHHHHHHhhcccCCcEEEEEeCCCCCCC
Q psy2408         143 LHGDALNLPFDNDSFDGGWFFESIF-HMNHSAALNEARRVLKSGSILTLTDLPLLSVS  199 (298)
Q Consensus       143 ~~~d~~~~~~~~~~fD~V~~~~~l~-~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~  199 (298)
                        .++.++.-.-..+|+|++.-.-. .+-....++.....-+++.-+++.|...+...
T Consensus        73 --~~~~~~~~~l~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr~v  128 (159)
T d1gpja2          73 --VRFDELVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPRDV  128 (159)
T ss_dssp             --CCGGGHHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCSB
T ss_pred             --ccchhHHHHhccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeecCCCCc
Confidence              23333321114799998764432 23233555555444445555667677655543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.92  E-value=1.3  Score=34.18  Aligned_cols=77  Identities=17%  Similarity=0.007  Sum_probs=55.2

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCCC----------CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGDALNLP----------FD  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d~~~~~----------~~  153 (298)
                      .++++|-.|++. .++..+++.   .|++|+.+|.+++.++.+.+.+...+.. .++.++.+|+.+..          -.
T Consensus         4 ~gK~alVTGas~-GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           4 SNKTVIITGSSN-GIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            467888888654 455555544   4899999999999999988888766543 46889999998731          01


Q ss_pred             CCCeeEEEeccc
Q psy2408         154 NDSFDGGWFFES  165 (298)
Q Consensus       154 ~~~fD~V~~~~~  165 (298)
                      .+..|+++.+..
T Consensus        83 ~g~iDilvnnAG   94 (272)
T d1xkqa_          83 FGKIDVLVNNAG   94 (272)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCceEEEeCCc
Confidence            257899887643

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=86.91  E-value=0.71  Score=28.10  Aligned_cols=50  Identities=12%  Similarity=0.126  Sum_probs=37.9

Q ss_pred             HHHhCCCCCCCeEEEeCCCC--CHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Q psy2408          80 MINKTSITKGQRFIDIGCGF--GLSGIRLAKAKGCRVDGITISKFQQESAMK  129 (298)
Q Consensus        80 l~~~~~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~  129 (298)
                      +.+....+++.+||-.|...  |..+..+++..|++|+++.-|++..+.+++
T Consensus        23 ~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~   74 (77)
T d1o8ca2          23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKS   74 (77)
T ss_dssp             HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH
T ss_pred             HHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHH
Confidence            44555567888999877543  566777777789999999999988887765

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=85.82  E-value=0.39  Score=38.03  Aligned_cols=73  Identities=21%  Similarity=0.311  Sum_probs=45.1

Q ss_pred             eEEEeCCCCCHHHHHHHHh---cCCeEEEEe-CCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CCCCCeeEEE
Q psy2408          91 RFIDIGCGFGLSGIRLAKA---KGCRVDGIT-ISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FDNDSFDGGW  161 (298)
Q Consensus        91 ~vLDiGcG~G~~~~~l~~~---~~~~v~~vD-~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~V~  161 (298)
                      +||=.| |+|.++..+++.   .|.+|+++| ++.............   ..+++++.+|+.+..     +...++|.|+
T Consensus         2 KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~---~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vi   77 (338)
T d1orra_           2 KLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLITKYMPDSCF   77 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             EEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhc---cCCcEEEEcccCCHHHHHHHHHhcCCceEE
Confidence            677555 789999888775   378999998 332221111112221   246899999998742     2234579988


Q ss_pred             eccccc
Q psy2408         162 FFESIF  167 (298)
Q Consensus       162 ~~~~l~  167 (298)
                      -.....
T Consensus        78 h~aa~~   83 (338)
T d1orra_          78 HLAGQV   83 (338)
T ss_dssp             ECCCCC
T ss_pred             eecccc
Confidence            655543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.81  E-value=1  Score=32.59  Aligned_cols=85  Identities=13%  Similarity=0.041  Sum_probs=52.7

Q ss_pred             HHHHHHhCCC-CCCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-
Q psy2408          77 SRIMINKTSI-TKGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-  151 (298)
Q Consensus        77 ~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-  151 (298)
                      +..+.+..+. -++++||=.|++.| .+..+++.   .|++|+.++.+++.++...+.+....   ++.+...|+.+.. 
T Consensus        10 v~~~~~~~~~~l~gK~vlItGasgG-IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~   85 (191)
T d1luaa1          10 VALVVKAAGGSVKGKKAVVLAGTGP-VGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDAS   85 (191)
T ss_dssp             HHHHHHHTTSCCTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHH
T ss_pred             HHHHHHHcCCCCCCCEEEEECCCHH-HHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHH
Confidence            3344455432 26789998885543 44444433   58999999999998888877766532   2445555655421 


Q ss_pred             --CCCCCeeEEEeccc
Q psy2408         152 --FDNDSFDGGWFFES  165 (298)
Q Consensus       152 --~~~~~fD~V~~~~~  165 (298)
                        ---+..|+++.+..
T Consensus        86 ~~~~~~~iDilin~Ag  101 (191)
T d1luaa1          86 RAEAVKGAHFVFTAGA  101 (191)
T ss_dssp             HHHHTTTCSEEEECCC
T ss_pred             HHHHhcCcCeeeecCc
Confidence              00256898887654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=85.80  E-value=1.4  Score=33.86  Aligned_cols=75  Identities=19%  Similarity=0.146  Sum_probs=52.7

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----C-----CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----F-----DN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  154 (298)
                      .++.+|-.|++.| ++..+++.   .|++|+.+|.+++.++.+.+.+...   .++.++.+|+.+..     +     ..
T Consensus         5 ~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           5 QDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC---CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            5778888886655 55555544   4899999999998888777666433   45888899987731     0     12


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +..|+++.+...
T Consensus        81 g~iD~lVnnAG~   92 (268)
T d2bgka1          81 GKLDIMFGNVGV   92 (268)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCcceecccccc
Confidence            578999876544

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.51  E-value=1.8  Score=32.93  Aligned_cols=77  Identities=14%  Similarity=0.096  Sum_probs=55.1

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC--------C-C--
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP--------F-D--  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~-~--  153 (298)
                      .++++|-.|++.| ++..+++.   .|++|+.+|.+++.++.+.+.+...+  .++..+.+|+.+..        . .  
T Consensus         7 kgK~alVTGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           7 KAKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            4778888886654 44445443   48999999999999988888877655  36889999987631        0 0  


Q ss_pred             CCCeeEEEeccccc
Q psy2408         154 NDSFDGGWFFESIF  167 (298)
Q Consensus       154 ~~~fD~V~~~~~l~  167 (298)
                      .+..|+++.+....
T Consensus        84 ~g~idilvnnAG~~   97 (259)
T d1xq1a_          84 GGKLDILINNLGAI   97 (259)
T ss_dssp             TTCCSEEEEECCC-
T ss_pred             CCCccccccccccc
Confidence            25789998765543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.29  E-value=1.8  Score=32.99  Aligned_cols=77  Identities=17%  Similarity=-0.019  Sum_probs=54.6

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEECCCCCCC----------CC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLL-DKVNFLHGDALNLP----------FD  153 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~i~~~~~d~~~~~----------~~  153 (298)
                      .++.+|-.|++. .++..+++.   .|++|+.+|.+++.++.+.+.+...+.. .++.++.+|+.+..          -.
T Consensus         4 ~gKvalVTGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSSN-GIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            466777777654 455555554   4899999999999999888887766543 46889999998741          01


Q ss_pred             CCCeeEEEeccc
Q psy2408         154 NDSFDGGWFFES  165 (298)
Q Consensus       154 ~~~fD~V~~~~~  165 (298)
                      -+..|+++.+..
T Consensus        83 ~g~iDilvnnAG   94 (264)
T d1spxa_          83 FGKLDILVNNAG   94 (264)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCCCEeecccc
Confidence            257898887644

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=84.51  E-value=0.52  Score=34.22  Aligned_cols=99  Identities=15%  Similarity=0.103  Sum_probs=59.5

Q ss_pred             CeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc-------C-CC--------CceEEEECCCCCCCC
Q psy2408          90 QRFIDIGCGF-GLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAE-------G-LL--------DKVNFLHGDALNLPF  152 (298)
Q Consensus        90 ~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~~  152 (298)
                      .+|--||+|+ |.-...+....|.+|+.+|++++.++.+..++...       + ..        .++.. ..+...+  
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~--   81 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSYGDF--   81 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSSTTG--
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-ccccccc--
Confidence            4678889886 33222222225899999999999988887765421       1 00        11222 2232222  


Q ss_pred             CCCCeeEEEecccccccChH-HHHHHHhhcccCCcEEEEEeCC
Q psy2408         153 DNDSFDGGWFFESIFHMNHS-AALNEARRVLKSGSILTLTDLP  194 (298)
Q Consensus       153 ~~~~fD~V~~~~~l~~~~~~-~~l~~~~r~LkpgG~l~i~~~~  194 (298)
                        ...|+|+= .+.+.+.-. ++++++.+.+.|+-.|.-....
T Consensus        82 --~~adlViE-av~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~  121 (186)
T d1wdka3          82 --GNVDLVVE-AVVENPKVKQAVLAEVENHVREDAILASNTST  121 (186)
T ss_dssp             --GGCSEEEE-CCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS
T ss_pred             --cccceeee-eecchHHHHHHHHHHHHhhcCCCeeEEecccc
Confidence              34677653 334444444 9999999999999776654433

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=84.05  E-value=3.6  Score=28.84  Aligned_cols=74  Identities=19%  Similarity=0.078  Sum_probs=45.6

Q ss_pred             CCCCeEEEeCCCCC-HHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc
Q psy2408          87 TKGQRFIDIGCGFG-LSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        87 ~~~~~vLDiGcG~G-~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      .++.+||=+|||-- ....+.....+++++.+.-+.+..+...+.+...+   .+.  ..+..+.  ....+|+|+..-.
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~---~~~--~~~~~~~--~~~~~dliIN~Tp   88 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG---SIQ--ALSMDEL--EGHEFDLIINATS   88 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS---SEE--ECCSGGG--TTCCCSEEEECCS
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc---ccc--ccccccc--cccccceeecccc
Confidence            46789999999853 33333333367899999999877666655554332   232  2333332  2357899987655


Q ss_pred             cc
Q psy2408         166 IF  167 (298)
Q Consensus       166 l~  167 (298)
                      +.
T Consensus        89 ~G   90 (170)
T d1nyta1          89 SG   90 (170)
T ss_dssp             CG
T ss_pred             cC
Confidence            44

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=83.80  E-value=4.3  Score=28.57  Aligned_cols=74  Identities=11%  Similarity=0.007  Sum_probs=46.9

Q ss_pred             CCCCeEEEeCCCCC-HHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc
Q psy2408          87 TKGQRFIDIGCGFG-LSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        87 ~~~~~vLDiGcG~G-~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      .++.+||=+|||-. ....+.....+.+++.+.-+.+..+...+.+...+   ++.....|..  +  ...+|+|+..-.
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~---~~~~~~~~~~--~--~~~~diiIN~tp   88 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG---NIQAVSMDSI--P--LQTYDLVINATS   88 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS---CEEEEEGGGC--C--CSCCSEEEECCC
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc---ccchhhhccc--c--ccccceeeeccc
Confidence            36789999999853 32222222246799999999988777777765432   3444444422  2  367999987655


Q ss_pred             cc
Q psy2408         166 IF  167 (298)
Q Consensus       166 l~  167 (298)
                      +.
T Consensus        89 ~g   90 (171)
T d1p77a1          89 AG   90 (171)
T ss_dssp             C-
T ss_pred             cc
Confidence            43

>d1vkra_ c.44.2.1 (A:) PTS system mannitol-specific EIICBA component {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: PTS system IIB component-like
family: PTS system, Lactose/Cellobiose specific IIB subunit
domain: PTS system mannitol-specific EIICBA component
species: Escherichia coli [TaxId: 562]

Probab=83.73  E-value=2.5  Score=26.82  Aligned_cols=54  Identities=19%  Similarity=0.263  Sum_probs=38.1

Q ss_pred             eEEEeCCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEeccc
Q psy2408          91 RFIDIGCGFGLSGIRLAKAKGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFES  165 (298)
Q Consensus        91 ~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~~  165 (298)
                      +||-+ ||+|.-+..+.+                ...++.+.+.|++ .+.+.+.++.+++   +.+|+|++..-
T Consensus         5 kIl~v-Cg~G~GSS~m~~----------------~~l~~~lk~~gi~-~i~v~~~~i~~~~---~d~DlIvt~~~   58 (97)
T d1vkra_           5 KIIVA-CDAGMGSSAMGA----------------GVLRKKIQDAGLS-QISVTNSAINNLP---PDVDLVITHRD   58 (97)
T ss_dssp             EEEEC-CSSSSHHHHHHH----------------HHHHHHHHHTTCT-TSEEEECCTTCCC---TTCSEEEEEHH
T ss_pred             EEEEE-CCCCcCHHHHHH----------------HHHHHHHHHcCCC-ceEEEEeEhhhCC---CCCCEEEEcHH
Confidence            55644 999988877776                2455666777875 3678888887764   35899987653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.58  E-value=1.4  Score=28.72  Aligned_cols=87  Identities=14%  Similarity=0.067  Sum_probs=51.0

Q ss_pred             CCCeEEEeCCCC-CHHHHHHHHhcCCeEEEEeCC--HHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCCCCeeEEEecc
Q psy2408          88 KGQRFIDIGCGF-GLSGIRLAKAKGCRVDGITIS--KFQQESAMKTAKAEGLLDKVNFLHGDALNLPFDNDSFDGGWFFE  164 (298)
Q Consensus        88 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s--~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~V~~~~  164 (298)
                      .+.+||=+|+|. |.--.......|++++.++..  ++....+.    .    .++.+....+..-.+  ..+++|+...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~----~----~~i~~~~~~~~~~dl--~~~~lv~~at   80 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWAN----E----GMLTLVEGPFDETLL--DSCWLAIAAT   80 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHT----T----TSCEEEESSCCGGGG--TTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHh----c----CCceeeccCCCHHHh--CCCcEEeecC
Confidence            578999999986 333222222258888887653  43333321    1    357777777655333  4577776532


Q ss_pred             cccccChHHHHHHHhhcccCCcEEE
Q psy2408         165 SIFHMNHSAALNEARRVLKSGSILT  189 (298)
Q Consensus       165 ~l~~~~~~~~l~~~~r~LkpgG~l~  189 (298)
                           .+...-.++....++.|.++
T Consensus        81 -----~d~~~n~~i~~~a~~~~ilV  100 (113)
T d1pjqa1          81 -----DDDTVNQRVSDAAESRRIFC  100 (113)
T ss_dssp             -----SCHHHHHHHHHHHHHTTCEE
T ss_pred             -----CCHHHHHHHHHHHHHcCCEE
Confidence                 23344456777777777765

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=83.49  E-value=0.78  Score=36.48  Aligned_cols=70  Identities=19%  Similarity=0.225  Sum_probs=46.0

Q ss_pred             CeEEEeCCCCCHHHHHHHHh---cCCeEEEEeC----CHHHHHHHHHHHHhcCCCCceEEEECCCCCCC-----CCCCCe
Q psy2408          90 QRFIDIGCGFGLSGIRLAKA---KGCRVDGITI----SKFQQESAMKTAKAEGLLDKVNFLHGDALNLP-----FDNDSF  157 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~----s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~f  157 (298)
                      ++||=.| |+|.++..+++.   .|.+|+++|.    ....+...... ..    .++.++.+|+.+..     +...++
T Consensus         1 MKiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~-~~----~~~~~~~~Dl~d~~~l~~~~~~~~~   74 (338)
T d1udca_           1 MRVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL-GG----KHPTFVEGDIRNEALMTEILHDHAI   74 (338)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHH-HT----SCCEEEECCTTCHHHHHHHHHHTTC
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhh-cC----CCCEEEEeecCCHHHHHHHHhccCC
Confidence            4677777 899999988876   3789999985    22233322222 11    36899999998752     233578


Q ss_pred             eEEEeccc
Q psy2408         158 DGGWFFES  165 (298)
Q Consensus       158 D~V~~~~~  165 (298)
                      |+|+-..+
T Consensus        75 d~ViHlAa   82 (338)
T d1udca_          75 DTVIHFAG   82 (338)
T ss_dssp             SEEEECCS
T ss_pred             CEEEECCC
Confidence            99885443

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=83.49  E-value=2.9  Score=31.64  Aligned_cols=72  Identities=14%  Similarity=0.048  Sum_probs=51.4

Q ss_pred             EEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CCCCCee
Q psy2408          92 FIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FDNDSFD  158 (298)
Q Consensus        92 vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~~fD  158 (298)
                      +|--|++ +.++..+++.   .|++|+.+|.+++.++...+.+...+  .++.++.+|+.+..          -.-+..|
T Consensus         4 alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (255)
T d1gega_           4 ALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   80 (255)
T ss_dssp             EEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEcCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence            4555654 5555555554   48999999999999998888887765  46888999998741          0126799


Q ss_pred             EEEecccc
Q psy2408         159 GGWFFESI  166 (298)
Q Consensus       159 ~V~~~~~l  166 (298)
                      +++.+..+
T Consensus        81 ilVnnAG~   88 (255)
T d1gega_          81 VIVNNAGV   88 (255)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            99876443

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=82.77  E-value=0.12  Score=39.71  Aligned_cols=51  Identities=8%  Similarity=0.067  Sum_probs=34.5

Q ss_pred             EEEECCCCCC--CCCCCCeeEEEecccccc-------cC-------hH-HHHHHHhhcccCCcEEEEE
Q psy2408         141 NFLHGDALNL--PFDNDSFDGGWFFESIFH-------MN-------HS-AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       141 ~~~~~d~~~~--~~~~~~fD~V~~~~~l~~-------~~-------~~-~~l~~~~r~LkpgG~l~i~  191 (298)
                      .++++|..++  .++++++|+|+..--...       ..       .. ..++++.|+|+|+|.+++.
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~   73 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence            4677777653  356788888887533211       11       11 6788999999999988765

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=82.50  E-value=1.3  Score=30.59  Aligned_cols=91  Identities=15%  Similarity=0.145  Sum_probs=54.7

Q ss_pred             CeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----CCCCCeeEEEe
Q psy2408          90 QRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----FDNDSFDGGWF  162 (298)
Q Consensus        90 ~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~V~~  162 (298)
                      .+|+=+|+|  ..+..+++.   .+..++.+|.+++......+....    ..+.++.+|..+..    ..-+..|.|++
T Consensus         4 nHiII~G~g--~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~   77 (153)
T d1id1a_           4 DHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             SCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             CEEEEECCC--HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHhccccCCEEEE
Confidence            367777664  555656554   478999999998654433333332    24789999987741    12256777765


Q ss_pred             cccccccChH---HHHHHHhhcccCCcEEEEE
Q psy2408         163 FESIFHMNHS---AALNEARRVLKSGSILTLT  191 (298)
Q Consensus       163 ~~~l~~~~~~---~~l~~~~r~LkpgG~l~i~  191 (298)
                      ..     ++.   ..+....+-+.|...++..
T Consensus        78 ~~-----~~d~~n~~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          78 LS-----DNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             CS-----SCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             cc-----ccHHHHHHHHHHHHHhCCCCceEEE
Confidence            32     222   3344455566777766654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=81.84  E-value=3  Score=31.44  Aligned_cols=77  Identities=18%  Similarity=0.080  Sum_probs=55.7

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FDN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  154 (298)
                      .++.+|=.|++ +.++..+++.   .|++|+.+|.+++.++.+.+.+...+  .++.++..|+.+..          -.-
T Consensus         9 enKvalITGas-~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   85 (251)
T d2c07a1           9 ENKVALVTGAG-RGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEH   85 (251)
T ss_dssp             SSCEEEEESTT-SHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            46677777755 4566666664   47899999999999998888887655  46889999998731          012


Q ss_pred             CCeeEEEeccccc
Q psy2408         155 DSFDGGWFFESIF  167 (298)
Q Consensus       155 ~~fD~V~~~~~l~  167 (298)
                      +..|+++.+....
T Consensus        86 g~iDilvnnag~~   98 (251)
T d2c07a1          86 KNVDILVNNAGIT   98 (251)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCceeeeeccccc
Confidence            6789888765543

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=81.45  E-value=2.6  Score=32.56  Aligned_cols=77  Identities=10%  Similarity=-0.072  Sum_probs=52.6

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FDN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  154 (298)
                      .|+++|=.|++. .++..+++.   .|++|+.+|.+...++...+.+.... ..++.++..|+.+..          ...
T Consensus        24 ~gK~alITGas~-GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~~  101 (294)
T d1w6ua_          24 QGKVAFITGGGT-GLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKVA  101 (294)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhhc
Confidence            567888888765 455555554   48999999999988777665554322 245788889987741          113


Q ss_pred             CCeeEEEecccc
Q psy2408         155 DSFDGGWFFESI  166 (298)
Q Consensus       155 ~~fD~V~~~~~l  166 (298)
                      +..|+++.+...
T Consensus       102 g~iDilvnnAg~  113 (294)
T d1w6ua_         102 GHPNIVINNAAG  113 (294)
T ss_dssp             CSCSEEEECCCC
T ss_pred             cccchhhhhhhh
Confidence            678988876544

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.32  E-value=4  Score=30.79  Aligned_cols=60  Identities=17%  Similarity=-0.071  Sum_probs=42.9

Q ss_pred             CCeEEEeCCCCCHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKA------KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALN  149 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~------~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~  149 (298)
                      |+.+|=-|++. .++..+++.      .|++|+.++.+++.++.+.+.+...+...++.++.+|+.+
T Consensus         6 gKvalITGas~-GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~   71 (259)
T d1oaaa_           6 CAVCVLTGASR-GFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT   71 (259)
T ss_dssp             SEEEEESSCSS-HHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS
T ss_pred             CCEEEEeCCCC-HHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCC
Confidence            44455555554 455555443      2789999999999999888887765555578899999887

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=80.69  E-value=4.3  Score=30.58  Aligned_cols=75  Identities=15%  Similarity=0.068  Sum_probs=53.2

Q ss_pred             CCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CCCC
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FDND  155 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~  155 (298)
                      |+.+|--|++ +.++..+++.   .|++|+.+|.+++.++...+.+...+  .++.++.+|+.+..          -.-+
T Consensus         2 gKValITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           2 SEVALVTGAT-SGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            3455666654 4555555554   48999999999999998888887765  36889999998742          0126


Q ss_pred             CeeEEEecccc
Q psy2408         156 SFDGGWFFESI  166 (298)
Q Consensus       156 ~fD~V~~~~~l  166 (298)
                      ..|+++.+..+
T Consensus        79 ~iDilVnnAG~   89 (257)
T d2rhca1          79 PVDVLVNNAGR   89 (257)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEecccc
Confidence            78998876544

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.30  E-value=2.8  Score=31.55  Aligned_cols=74  Identities=16%  Similarity=0.094  Sum_probs=50.7

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCC----------CCC
Q psy2408          88 KGQRFIDIGCGFGLSGIRLAKA---KGCRVDGITISKFQQESAMKTAKAEGLLDKVNFLHGDALNLP----------FDN  154 (298)
Q Consensus        88 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  154 (298)
                      .|+++|--|++.| ++..+++.   .|++|+.+|.+++.++...+.+.     .++.++.+|+.+..          -.-
T Consensus         5 ~gK~alITGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (244)
T d1nffa_           5 TGKVALVSGGARG-MGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAVTAF   78 (244)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh-----CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence            5778888887655 45555443   48999999999987776655543     45788899987741          012


Q ss_pred             CCeeEEEeccccc
Q psy2408         155 DSFDGGWFFESIF  167 (298)
Q Consensus       155 ~~fD~V~~~~~l~  167 (298)
                      +..|+++.+....
T Consensus        79 g~idilinnAG~~   91 (244)
T d1nffa_          79 GGLHVLVNNAGIL   91 (244)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCeEEEECCccc
Confidence            5689888765543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.06  E-value=2.3  Score=34.28  Aligned_cols=75  Identities=21%  Similarity=0.142  Sum_probs=44.7

Q ss_pred             CCeEEEeCCCCCHHHHHHHHhc---CCeEEEEeCCHHHHHHHH----------------HHHHhcCCCCceEEEECCCCC
Q psy2408          89 GQRFIDIGCGFGLSGIRLAKAK---GCRVDGITISKFQQESAM----------------KTAKAEGLLDKVNFLHGDALN  149 (298)
Q Consensus        89 ~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~l~~a~----------------~~~~~~~~~~~i~~~~~d~~~  149 (298)
                      |++||=.| |+|.++..+++.+   |.+|+++|..........                ...... ...++.++.+|+.+
T Consensus         1 g~kILVTG-atGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~Dl~d   78 (393)
T d1i24a_           1 GSRVMVIG-GDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL-TGKSIELYVGDICD   78 (393)
T ss_dssp             -CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH-HCCCCEEEESCTTS
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhh-cCCCcEEEEccCCC
Confidence            57888777 6999998888763   789999993211111100                111110 01468999999987


Q ss_pred             CC-----CCCCCeeEEEeccc
Q psy2408         150 LP-----FDNDSFDGGWFFES  165 (298)
Q Consensus       150 ~~-----~~~~~fD~V~~~~~  165 (298)
                      ..     +....+|.|+-..+
T Consensus        79 ~~~l~~~~~~~~~d~ViHlAa   99 (393)
T d1i24a_          79 FEFLAESFKSFEPDSVVHFGE   99 (393)
T ss_dssp             HHHHHHHHHHHCCSEEEECCS
T ss_pred             HHHHHHHHHhhcchheecccc
Confidence            42     22335788875443