Psyllid ID: psy2416

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
MGSHKPESLKAPPKPYGKIALSLSNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYTRPKANTDELERQIEVIKKEYQLSKDRKVLVSGDNTPTSNASPNIKSPSRHNNHKRKSRSRSRTRSPVTSKSRSRSRSPQPPKHKKSKKYSSRARSRSKSPRSRSRTPDRKYKKSHKSHKDSKDYYTPPSPDRSPYSSHSRSHSRKSS
cccccccccccccccccccccccccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccEEEEEccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHccccccccccccEEEcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccEEEEEEccEEccHHHHcccccccccccHHHHHHHHHHHHHHHHHHccHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHcccccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHcccccccccHHEEEcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mgshkpeslkappkpygkIALSlsncllpeeklnptpsmldgldpeveTDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYsksfvrhpmettamGCVCLASKIEEAPRRIRDVINVFHHIRQVMnqksitpmlLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMNdslrtdvfvrydpeTIASACIYLTARKlriplprnpawYSLFHVLESDIQDVCKRILRLytrpkantdELERQIEVIKKEYqlskdrkvlvsgdntptsnaspnikspsrhnnhkrksrsrsrtrspvtsksrsrsrspqppkhkkskkyssrarsrsksprsrsrtpdrkykkshkshkdskdyytppspdrspysshsrshsrkss
mgshkpeslkappkpyGKIALSLSNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQvmnqksitpmLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLytrpkantdeleRQIEVIkkeyqlskdrkvlvsgdntptsnaspnikspsrhnnhkrksrsrsrtrspvtsksrsrsrspqppkhkkskkyssrarsrsksprsrsrtpdrkykkshkshkdskdyytppspdrspysshsrshsrkss
MGSHKPESLKAPPKPYGKIALSLSNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYTRPKANTDELERQIEVIKKEYQLSKDRKVLVSGDNTPTSNASPNIKSPSRHNNHkrksrsrsrtrspvtsksrsrsrspqppkhkkskkyssrarsrsksprsrsrtpdrkykkshkshkdskdyyTppspdrspysshsrshsrkss
******************IALSLSNCLL*****************EVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYTRPKANTDELERQIEVIK**********************************************************************************************************************************
**********************LSNCLLPEEKLNP*******LDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYTRPKA***********************************************************************************************************************************************
***********PPKPYGKIALSLSNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYTRPKANTDELERQIEVIKKEYQLSKDRKVLVSGDN*****************************************************************************************************************
************PKPYGKIALSLSNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYTRPKANTDELERQIEVIK**********************************************************************************************************************************
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MGSHKPESLKAPPKPYGKIALSLSNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLANYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYTRPKANxxxxxxxxxxxxxxxxxxxxxKVLVSGDNTPTSNASPNIKSPSRHNNHKRKSRSRSRTRSPVTSKSRSRSRSPQPPKHKKSKKYSSRARSRSKSPRSRSRTPDRKYKKSHKSHKDSKDYYTPPSPDRSPYSSHSRSHSRKSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query405 2.2.26 [Sep-21-2011]
Q5BKF8497 Cyclin-L2 OS=Xenopus trop yes N/A 0.730 0.595 0.607 1e-103
Q9JJA7518 Cyclin-L2 OS=Mus musculus yes N/A 0.790 0.617 0.561 1e-103
Q5I0H5520 Cyclin-L2 OS=Rattus norve yes N/A 0.790 0.615 0.566 1e-103
Q96S94520 Cyclin-L2 OS=Homo sapiens yes N/A 0.792 0.617 0.571 1e-103
Q5ZJP9534 Cyclin-L1 OS=Gallus gallu yes N/A 0.770 0.584 0.571 1e-103
Q7ZVX0498 Cyclin-L1 OS=Danio rerio no N/A 0.637 0.518 0.65 1e-101
Q52KE7532 Cyclin-L1 OS=Mus musculus no N/A 0.691 0.526 0.640 1e-101
Q9UK58526 Cyclin-L1 OS=Homo sapiens no N/A 0.691 0.532 0.640 1e-100
Q9R1Q2527 Cyclin-L1 OS=Rattus norve yes N/A 0.691 0.531 0.637 1e-100
Q6GN15496 Cyclin-L1 OS=Xenopus laev N/A N/A 0.691 0.564 0.615 1e-100
>sp|Q5BKF8|CCNL2_XENTR Cyclin-L2 OS=Xenopus tropicalis GN=ccnl2 PE=2 SV=1 Back     alignment and function desciption
 Score =  376 bits (966), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/298 (60%), Positives = 224/298 (75%), Gaps = 2/298 (0%)

Query: 14  KPYGKIALSLSNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAM 73
           K Y  + +SL NCL+ EE+   TPS++DG+D   E DLR +GCEL+Q AGILL+LPQVAM
Sbjct: 18  KLYSGVMISLENCLMAEERCALTPSVVDGIDVNTEIDLRCVGCELVQAAGILLRLPQVAM 77

Query: 74  ATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKS 133
           ATGQVLFQRF+Y+KSFV+H ME  AM CV LASKIEEAPRRIRDVINVFH +RQ+  ++ 
Sbjct: 78  ATGQVLFQRFFYTKSFVKHSMEHVAMACVHLASKIEEAPRRIRDVINVFHRLRQLREKQK 137

Query: 134 ITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLA 193
            TP++L  +Y+ LK Q+IKAERRVLKELGFCVHVKHPHKIIV YLQVL CE+N+ L+Q +
Sbjct: 138 STPLILDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNKHLVQTS 197

Query: 194 -NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKR 252
            NYMNDSLRTDVFVR++PETIA ACI+L AR L IPLP  P W+ LF   E DI+++C +
Sbjct: 198 WNYMNDSLRTDVFVRFNPETIACACIFLAARTLEIPLPNRPHWFYLFGASEEDIKEICLQ 257

Query: 253 ILRLYTRPKANTDELERQIEVIKKEYQLSKDRKVLVSGDNTPTSNASPNIKSPSRHNN 310
           ILRLYTR KA+   LE ++E  K   + +K +   +  D TP    +P   SPS  N+
Sbjct: 258 ILRLYTRKKADVALLENKVEKRKLFIEEAKAKAKGLLPDGTPRLENAPEF-SPSLKND 314
Transcriptional regulator which participates in regulating the pre-mRNA splicing process.
Xenopus tropicalis (taxid: 8364)
>sp|Q9JJA7|CCNL2_MOUSE Cyclin-L2 OS=Mus musculus GN=Ccnl2 PE=1 SV=1 Back     alignment and function description
>sp|Q5I0H5|CCNL2_RAT Cyclin-L2 OS=Rattus norvegicus GN=Ccnl2 PE=2 SV=2 Back     alignment and function description
>sp|Q96S94|CCNL2_HUMAN Cyclin-L2 OS=Homo sapiens GN=CCNL2 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZJP9|CCNL1_CHICK Cyclin-L1 OS=Gallus gallus GN=CCNL1 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZVX0|CCNL1_DANRE Cyclin-L1 OS=Danio rerio GN=ccnl1 PE=1 SV=1 Back     alignment and function description
>sp|Q52KE7|CCNL1_MOUSE Cyclin-L1 OS=Mus musculus GN=Ccnl1 PE=1 SV=1 Back     alignment and function description
>sp|Q9UK58|CCNL1_HUMAN Cyclin-L1 OS=Homo sapiens GN=CCNL1 PE=1 SV=1 Back     alignment and function description
>sp|Q9R1Q2|CCNL1_RAT Cyclin-L1 OS=Rattus norvegicus GN=Ccnl1 PE=1 SV=1 Back     alignment and function description
>sp|Q6GN15|CCNL1_XENLA Cyclin-L1 OS=Xenopus laevis GN=ccnl1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query405
328719625453 PREDICTED: cyclin-L2-like [Acyrthosiphon 0.896 0.801 0.618 1e-125
270009183486 hypothetical protein TcasGA2_TC015839 [T 0.906 0.755 0.625 1e-121
253735813402 cyclin L-like [Acyrthosiphon pisum] 0.819 0.825 0.621 1e-121
91085473503 PREDICTED: similar to AGAP001677-PA [Tri 0.906 0.729 0.625 1e-121
307189308417 Cyclin-L1 [Camponotus floridanus] 0.782 0.760 0.655 1e-120
380012171415 PREDICTED: cyclin-L2-like [Apis florea] 0.785 0.766 0.657 1e-120
383857413415 PREDICTED: cyclin-L2-like [Megachile rot 0.782 0.763 0.661 1e-120
345490541421 PREDICTED: cyclin-L1-like [Nasonia vitri 0.787 0.757 0.656 1e-119
350426618 1821 PREDICTED: hypothetical protein LOC10074 0.777 0.172 0.642 1e-119
242022259495 Cyclin-L1, putative [Pediculus humanus c 0.693 0.567 0.689 1e-117
>gi|328719625|ref|XP_001946255.2| PREDICTED: cyclin-L2-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/393 (61%), Positives = 291/393 (74%), Gaps = 30/393 (7%)

Query: 4   HKPESLKAPPKPYGKIALSLSNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAG 63
           H    LK P     K+ L+LSN LLP+EKL  TPSM+DGLD E E DLRI+GCE IQTAG
Sbjct: 17  HDRHVLKQP----TKVLLTLSNVLLPKEKLTSTPSMIDGLDFETEVDLRIVGCEWIQTAG 72

Query: 64  ILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFH 123
           ILLKLPQVAMATGQVLFQRFYY+KSFVRHPME TAM C CLASK+EE+PRRIRDVINV+H
Sbjct: 73  ILLKLPQVAMATGQVLFQRFYYTKSFVRHPMEITAMACTCLASKVEESPRRIRDVINVYH 132

Query: 124 HIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGC 183
           HIRQV+NQK ITP++L   Y+  KTQVIKAERRVLKELGFCVHVKHPHK+IV YLQ LG 
Sbjct: 133 HIRQVLNQKLITPLVLDQNYVQKKTQVIKAERRVLKELGFCVHVKHPHKLIVMYLQALGF 192

Query: 184 EKNQKLMQLA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVL 242
           EK+Q +MQ++ NYMNDSL+TDVFV++DPETIA ACIYL+ARKL+IPLP++PAWYSLF+  
Sbjct: 193 EKHQSIMQMSWNYMNDSLQTDVFVQFDPETIACACIYLSARKLQIPLPKSPAWYSLFNSN 252

Query: 243 ESDIQDVCKRILRLYTRPKANTDELERQIEVIKKEYQLSKD--RKVLVS----------- 289
           E+DIQD+C++IL+LY RPK  T++LER++E +KKEY  +K+  R  +V            
Sbjct: 253 ETDIQDICRKILKLYMRPKVITEDLERRVEELKKEYDHAKEKARAAIVHPIIQTEVVPPP 312

Query: 290 GDNTPTSNASPNIKSPSRHNNHKRKSRSRSRTRSPVTSKSRSRSRSPQPPKHKKSKKYSS 349
             N  T+ AS NI S +  N    K RSRSRT  P  +KS SRS     P+H K  K  +
Sbjct: 313 PTNGVTAAASENISSTTP-NKKPIKKRSRSRT-PPSETKSGSRS-----PRHLKKSKKRN 365

Query: 350 RARSRSKSPRSRSRTPDRKYKKSHKSHKDSKDY 382
             RSRSKS   R     R +K+  KS+K+ K Y
Sbjct: 366 HERSRSKSISDR-----RTHKQHRKSNKNRKRY 393

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|270009183|gb|EFA05631.1| hypothetical protein TcasGA2_TC015839 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|253735813|ref|NP_001156691.1| cyclin L-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|91085473|ref|XP_970453.1| PREDICTED: similar to AGAP001677-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307189308|gb|EFN73739.1| Cyclin-L1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|380012171|ref|XP_003690160.1| PREDICTED: cyclin-L2-like [Apis florea] Back     alignment and taxonomy information
>gi|383857413|ref|XP_003704199.1| PREDICTED: cyclin-L2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|345490541|ref|XP_001606206.2| PREDICTED: cyclin-L1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|350426618|ref|XP_003494492.1| PREDICTED: hypothetical protein LOC100746715 [Bombus impatiens] Back     alignment and taxonomy information
>gi|242022259|ref|XP_002431558.1| Cyclin-L1, putative [Pediculus humanus corporis] gi|212516861|gb|EEB18820.1| Cyclin-L1, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query405
FB|FBgn0040394560 CG16903 [Drosophila melanogast 0.713 0.516 0.637 4.1e-97
ZFIN|ZDB-GENE-050419-206 534 ccnl1a "cyclin L1a" [Danio rer 0.720 0.546 0.627 6.9e-96
UNIPROTKB|E1BJ67526 CCNL1 "Uncharacterized protein 0.688 0.530 0.642 1.3e-93
UNIPROTKB|C9JPL0428 CCNL1 "Cyclin-L1" [Homo sapien 0.688 0.651 0.642 1.3e-93
UNIPROTKB|Q9UK58526 CCNL1 "Cyclin-L1" [Homo sapien 0.688 0.530 0.642 1.3e-93
UNIPROTKB|I3LG02526 CCNL1 "Uncharacterized protein 0.688 0.530 0.642 1.3e-93
MGI|MGI:1922664532 Ccnl1 "cyclin L1" [Mus musculu 0.688 0.524 0.642 2.1e-93
RGD|620864527 Ccnl1 "cyclin L1" [Rattus norv 0.688 0.529 0.639 4.3e-93
UNIPROTKB|Q9R1Q2527 Ccnl1 "Cyclin-L1" [Rattus norv 0.688 0.529 0.639 4.3e-93
MGI|MGI:1927119518 Ccnl2 "cyclin L2" [Mus musculu 0.716 0.559 0.609 3e-92
FB|FBgn0040394 CG16903 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
 Identities = 190/298 (63%), Positives = 230/298 (77%)

Query:    13 PKPYGKIALSLSNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVA 72
             P+ + +I L+L N L+PE K++ TPS  DGLD E E DLRI+GCELIQTAGILL+LPQVA
Sbjct:    76 PRLFNRIVLTLENSLIPEGKIDVTPSSQDGLDHETEKDLRILGCELIQTAGILLRLPQVA 135

Query:    73 MATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQK 132
             MATGQVLFQRF+YSKSFVRH MET AM CVCLASKIEEAPRRIRDVINVFHHI+QV  QK
Sbjct:   136 MATGQVLFQRFFYSKSFVRHNMETVAMSCVCLASKIEEAPRRIRDVINVFHHIKQVRAQK 195

Query:   133 SITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQL 192
              I+PM+L   Y  LK QVIKAERRVLKELGFCVHVKHPHK+IV YLQVL  EK++KLMQL
Sbjct:   196 EISPMVLDPYYTNLKMQVIKAERRVLKELGFCVHVKHPHKLIVMYLQVLQYEKHEKLMQL 255

Query:   193 A-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCK 251
             + N+MNDSLRTDVF+RY PE IA ACIYL+ARKL IPLP +P W+ +F V  +DI D+C 
Sbjct:   256 SWNFMNDSLRTDVFMRYTPEAIACACIYLSARKLNIPLPNSPPWFGIFRVPMADITDICY 315

Query:   252 RILRLYTRPKANTDELERQIEVIKKEYQLSKDRKVLVSGDNTPTSNASPNIKSPSRHN 309
             R++ LY R K   ++LE  ++ +KK Y  ++++        T  +N  P + +  R+N
Sbjct:   316 RVMELYMRSKPVVEKLEAAVDELKKRYIDARNK--------TKEANTPPAVITVDRNN 365
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISS
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0006396 "RNA processing" evidence=IEA
GO:0019901 "protein kinase binding" evidence=IEA
GO:0022008 "neurogenesis" evidence=IMP
ZFIN|ZDB-GENE-050419-206 ccnl1a "cyclin L1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BJ67 CCNL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|C9JPL0 CCNL1 "Cyclin-L1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UK58 CCNL1 "Cyclin-L1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LG02 CCNL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1922664 Ccnl1 "cyclin L1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620864 Ccnl1 "cyclin L1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9R1Q2 Ccnl1 "Cyclin-L1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1927119 Ccnl2 "cyclin L2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5ZJP9CCNL1_CHICKNo assigned EC number0.57180.77030.5842yesN/A
Q96S94CCNL2_HUMANNo assigned EC number0.57140.79250.6173yesN/A
Q9JJA7CCNL2_MOUSENo assigned EC number0.56100.79010.6177yesN/A
Q5BKF8CCNL2_XENTRNo assigned EC number0.60730.73080.5955yesN/A
Q5I0H5CCNL2_RATNo assigned EC number0.56640.79010.6153yesN/A
Q9R1Q2CCNL1_RATNo assigned EC number0.63700.69130.5313yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
COG5333297 COG5333, CCL1, Cdk activating kinase (CAK)/RNA pol 3e-25
cd0004388 cd00043, CYCLIN, Cyclin box fold 5e-12
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 9e-09
cd0004388 cd00043, CYCLIN, Cyclin box fold 8e-08
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 1e-07
TIGR01622 457 TIGR01622, SF-CC1, splicing factor, CC1-like famil 4e-05
TIGR01642 509 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la 6e-04
TIGR01642 509 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la 7e-04
pfam02984117 pfam02984, Cyclin_C, Cyclin, C-terminal domain 8e-04
pfam08648158 pfam08648, DUF1777, Protein of unknown function (D 0.001
TIGR00569305 TIGR00569, ccl1, cyclin ccl1 0.001
TIGR01642 509 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la 0.002
TIGR01622 457 TIGR01622, SF-CC1, splicing factor, CC1-like famil 0.004
pfam08648158 pfam08648, DUF1777, Protein of unknown function (D 0.004
>gnl|CDD|227640 COG5333, CCL1, Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  104 bits (260), Expect = 3e-25
 Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 18/196 (9%)

Query: 40  LDGLDPEV----ETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPME 95
           L  L+PE+    E +L I   +LI      L LPQ  +AT  + F RFY   S     + 
Sbjct: 29  LLVLEPELTLEKELNLVIYYLKLIMDLCTRLNLPQTVLATAILFFSRFYLKNSVEEISLY 88

Query: 96  TTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAER 155
           +    CV LA K+E+ PR I                      L + +  + + ++++ E 
Sbjct: 89  SVVTTCVYLACKVEDTPRDISIESFEARD-------------LWSEEPKSSRERILEYEF 135

Query: 156 RVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQLA-NYMNDSLRTDVFVRYDPETIA 214
            +L+ L F +HV HP+K +  +L+ L  +   KL+Q+A   +ND+LRTD+ + Y P  IA
Sbjct: 136 ELLEALDFDLHVHHPYKYLEGFLKDLQEKDKYKLLQIAWKIINDALRTDLCLLYPPHIIA 195

Query: 215 SACIYLTARKLRIPLP 230
            A + +    L +P+ 
Sbjct: 196 LAALLIACEVLGMPII 211

Length = 297
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family Back     alignment and domain information
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor Back     alignment and domain information
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor Back     alignment and domain information
>gnl|CDD|217307 pfam02984, Cyclin_C, Cyclin, C-terminal domain Back     alignment and domain information
>gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777) Back     alignment and domain information
>gnl|CDD|129660 TIGR00569, ccl1, cyclin ccl1 Back     alignment and domain information
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor Back     alignment and domain information
>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family Back     alignment and domain information
>gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 405
KOG0835|consensus367 100.0
KOG0834|consensus323 100.0
TIGR00569305 ccl1 cyclin ccl1. University). 100.0
KOG0794|consensus264 100.0
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.97
KOG0656|consensus335 99.92
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.91
KOG2496|consensus325 99.91
KOG0655|consensus408 99.9
KOG0653|consensus391 99.88
COG5024440 Cyclin [Cell division and chromosome partitioning] 99.85
KOG0654|consensus359 99.85
KOG1597|consensus308 99.82
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.72
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.71
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.44
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.33
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.17
KOG0835|consensus367 99.03
KOG1598|consensus 521 98.81
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 98.66
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.6
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.55
KOG4164|consensus497 98.39
KOG4368|consensus757 98.23
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.1
PRK00423310 tfb transcription initiation factor IIB; Reviewed 97.94
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 97.8
KOG4368|consensus 757 97.43
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 96.54
KOG2548|consensus 653 96.09
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 96.02
KOG1597|consensus308 95.72
KOG2548|consensus 653 95.52
PF01857135 RB_B: Retinoblastoma-associated protein B domain; 95.48
KOG0151|consensus877 95.33
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 94.23
KOG0151|consensus877 93.69
TIGR00569305 ccl1 cyclin ccl1. University). 93.39
KOG1674|consensus218 93.37
KOG0834|consensus323 92.99
KOG1598|consensus521 92.81
KOG1847|consensus 878 92.59
KOG4557|consensus262 92.52
KOG1847|consensus 878 92.36
KOG2146|consensus354 90.76
KOG0132|consensus 894 90.29
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 90.02
KOG1675|consensus343 89.59
KOG0656|consensus335 88.88
KOG0794|consensus264 88.49
KOG2146|consensus354 86.57
KOG0796|consensus319 86.05
>KOG0835|consensus Back     alignment and domain information 
Probab=100.00  E-value=8e-54  Score=391.48  Aligned_cols=259  Identities=56%  Similarity=0.941  Sum_probs=243.4

Q ss_pred             hhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHHHHHhhcCC
Q psy2416          32 KLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVCLASKIEEA  111 (405)
Q Consensus        32 ~l~~tps~~~gi~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~LA~K~ee~  111 (405)
                      .|..+|+..+|++.+.|..+|..+|+||++.|..|+||+.+++|+.++|+|||..+++..+++..|++|||+||+|+||.
T Consensus         3 ~i~~~~s~qd~l~~e~e~el~~LG~e~Iqea~ILL~L~q~a~atgqVLFqRf~~~ks~v~~~~e~vv~ACv~LASKiEE~   82 (367)
T KOG0835|consen    3 KIDSTPSLQDGLSLETEEELRILGCELIQEAGILLNLPQVAMATGQVLFQRFCYSKSFVRHDFEIVVMACVLLASKIEEE   82 (367)
T ss_pred             cccCchhhhcccccchHHHHHHHhHHHHHhhhHhhcCcHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHhhhccc
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCCCccHHHHH
Q psy2416         112 PRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQKLMQ  191 (405)
Q Consensus       112 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~~~~~~l~~  191 (405)
                      |.+++||++|++.+.+........+.+.+..|..++..++.+|..||.+|||+++|.|||.++..|++.|++..+..|.|
T Consensus        83 Prr~rdVinVFh~L~~r~~~~~~~~~~~~~~~~~lk~~~ir~e~~ILr~LGF~~Hv~hPhklii~YLqtL~~~~~~~l~Q  162 (367)
T KOG0835|consen   83 PRRIRDVINVFHYLEQRRESEAAEHLILARLYINLKMQVIRAERRILRELGFDVHVEHPHKLIIMYLQTLQLPPNLKLLQ  162 (367)
T ss_pred             cccHhHHHHHHHHHHHHHhccCcchhhhhhHHhhhhhHHHHHHHHHHHHhCCeeeeeccHHHHHHHHHHhcCCCchhHHH
Confidence            99999999999999876555555555667788889999999999999999999999999999999999999998888999


Q ss_pred             HH-HHHHHhcCCcccccCChHHHHHHHHHHHHHHcCCCCCCCcchhhhhhcchhhHHHHHHHHHHHhcCCCCChhHHHHH
Q psy2416         192 LA-NYMNDSLRTDVFVRYDPETIASACIYLTARKLRIPLPRNPAWYSLFHVLESDIQDVCKRILRLYTRPKANTDELERQ  270 (405)
Q Consensus       192 ~A-~~l~d~~~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~~~~w~~~~~~~~~~l~~~~~~il~ly~~~~~~~~~l~~~  270 (405)
                      .+ +|+||++.|++|+.|+|..|||||||||+..+++++|..+.||..|+++.++|+++|..++.+|...+++..-++..
T Consensus       163 ~~wNfmNDslRT~v~vry~pe~iACaciyLaAR~~eIpLp~~P~Wf~~Fd~~k~eid~ic~~l~~lY~~~~p~~~li~~~  242 (367)
T KOG0835|consen  163 AAWNFMNDSLRTDVFVRYSPESIACACIYLAARNLEIPLPFQPHWFKAFDTTKREIDEICYRLIPLYKRAKPDETLIEAF  242 (367)
T ss_pred             HHHHhhhhccccceeeecCHHHHHHHHHHHHHhhhcCCCCCCccHHHHcCCcHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence            99 99999999999999999999999999999999999999999999999999999999999999999988888888888


Q ss_pred             HHHHHHHHHHHHhhhhccCC
Q psy2416         271 IEVIKKEYQLSKDRKVLVSG  290 (405)
Q Consensus       271 l~~~r~~~~~~k~k~~~~~~  290 (405)
                      ++..+.+|+.+..+.++...
T Consensus       243 vd~~k~~~~da~~k~~~~~d  262 (367)
T KOG0835|consen  243 VDRLKRKFSDASGKAKGAND  262 (367)
T ss_pred             HHHhhHHHHhccCCccchhh
Confidence            88888889998888777664

>KOG0834|consensus Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0794|consensus Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0656|consensus Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG2496|consensus Back     alignment and domain information
>KOG0655|consensus Back     alignment and domain information
>KOG0653|consensus Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0654|consensus Back     alignment and domain information
>KOG1597|consensus Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0835|consensus Back     alignment and domain information
>KOG1598|consensus Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG4164|consensus Back     alignment and domain information
>KOG4368|consensus Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG4368|consensus Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG2548|consensus Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1597|consensus Back     alignment and domain information
>KOG2548|consensus Back     alignment and domain information
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation Back     alignment and domain information
>KOG0151|consensus Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0151|consensus Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG1674|consensus Back     alignment and domain information
>KOG0834|consensus Back     alignment and domain information
>KOG1598|consensus Back     alignment and domain information
>KOG1847|consensus Back     alignment and domain information
>KOG4557|consensus Back     alignment and domain information
>KOG1847|consensus Back     alignment and domain information
>KOG2146|consensus Back     alignment and domain information
>KOG0132|consensus Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1675|consensus Back     alignment and domain information
>KOG0656|consensus Back     alignment and domain information
>KOG0794|consensus Back     alignment and domain information
>KOG2146|consensus Back     alignment and domain information
>KOG0796|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
2i53_A258 Crystal Structure Of Cyclin K Length = 258 2e-28
2pk2_A358 Cyclin Box Structure Of The P-Tefb Subunit Cyclin T 7e-19
3mi9_B266 Crystal Structure Of Hiv-1 Tat Complexed With Human 3e-18
3tnh_B259 Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 3e-18
2w2h_A264 Structural Basis Of Transcription Activation By The 4e-18
3blh_B260 Crystal Structure Of Human Cdk9CYCLINT1 Length = 26 4e-18
2ivx_A257 Crystal Structure Of Human Cyclin T2 At 1.8 A Resol 9e-16
3rgf_B285 Crystal Structure Of Human Cdk8CYCC Length = 285 1e-12
1zp2_A235 Structure Of The Mediator Subunit Cyclin C Length = 4e-04
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K Length = 258 Back     alignment and structure 
Iteration: 1

 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 130/252 (51%), Gaps = 28/252 (11%)
Query: 26  CLLPEEK-LNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFY 84
           C   ++K L  TPS L+GLDP  E   R  G   I   G  L L    +ATG + F RFY
Sbjct: 14  CWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFY 73
Query: 85  YSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYM 144
              SF + P   T   C+ LA K+EE P++ +D+I            K+   +L   Q+ 
Sbjct: 74  MFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDII------------KTARSLLNDVQFG 121
Query: 145 TL----KTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKN--QKLMQLA-NYMN 197
                 K +V+  ER +L+ + F + V+HP++ ++ Y + L  +KN  QKL+Q+A  ++N
Sbjct: 122 QFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVN 181
Query: 198 DSLRTDVFVRYDPETIASACIYLTARKLRIPL------PRNPAWYSLF--HVLESDIQDV 249
           DSL T + ++++PE IA A +YL  R  +  +      P    W+  F   V    ++D+
Sbjct: 182 DSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDI 241
Query: 250 CKRILRLYTRPK 261
           C +IL LY++ K
Sbjct: 242 CHQILDLYSQGK 253
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1 Derived From A Fusion Complex With Eiav Tat Length = 358 Back     alignment and structure
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 266 Back     alignment and structure
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 Back     alignment and structure
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin T1-Tat-Tar Rna Complex From Eiav Length = 264 Back     alignment and structure
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 Length = 260 Back     alignment and structure
>pdb|2IVX|A Chain A, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution (Casp Target) Length = 257 Back     alignment and structure
>pdb|3RGF|B Chain B, Crystal Structure Of Human Cdk8CYCC Length = 285 Back     alignment and structure
>pdb|1ZP2|A Chain A, Structure Of The Mediator Subunit Cyclin C Length = 235 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 2e-75
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 6e-72
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 2e-68
2ivx_A257 Cyclin-T2; transcription regulation, cell division 8e-67
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 1e-61
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 9e-61
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 3e-10
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 6e-10
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 1e-09
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 7e-09
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 2e-08
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 3e-08
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 1e-07
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 8e-07
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 9e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1c9b_A207 General transcription factor IIB; protein-DNA comp 3e-05
3pgw_S437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 4e-05
3pgw_S437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 3e-04
3pgw_S437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 6e-04
3pgw_S437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 9e-04
1ais_B200 TFB TFIIB, protein (transcription initiation facto 7e-04
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
 Score =  234 bits (598), Expect = 2e-75
 Identities = 76/251 (30%), Positives = 124/251 (49%), Gaps = 19/251 (7%)

Query: 22  SLSNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQ 81
           +       ++ L  TPS L+GLDP  E   R  G   I   G  L L    +ATG + F 
Sbjct: 11  TKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFH 70

Query: 82  RFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTT 141
           RFY   SF + P   T   C+ LA K+EE P++ +D+I     +   +            
Sbjct: 71  RFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQF------- 123

Query: 142 QYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGCEKNQ--KLMQLA-NYMND 198
                K +V+  ER +L+ + F + V+HP++ ++ Y + L  +KN+  KL+Q+A  ++ND
Sbjct: 124 -GDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVND 182

Query: 199 SLRTDVFVRYDPETIASACIYLTARKLRIPLPR------NPAWYSLF--HVLESDIQDVC 250
           SL T + ++++PE IA A +YL  R  +  +           W+  F   V    ++D+C
Sbjct: 183 SLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDIC 242

Query: 251 KRILRLYTRPK 261
            +IL LY++ K
Sbjct: 243 HQILDLYSQGK 253
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Length = 345 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Length = 207 Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Length = 200 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query405
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.98
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 99.98
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 99.97
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.95
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.93
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.87
1ais_B200 TFB TFIIB, protein (transcription initiation facto 98.16
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 97.88
1c9b_A207 General transcription factor IIB; protein-DNA comp 97.68
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 96.39
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 96.14
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 95.61
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 95.28
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 95.01
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 94.85
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 94.66
2ivx_A257 Cyclin-T2; transcription regulation, cell division 94.61
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 94.43
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 94.21
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 94.13
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 94.03
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 94.02
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 93.9
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 93.44
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 91.55
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 91.09
3m03_A95 ORC6, origin recognition complex subunit 6; helix 91.06
3m03_A95 ORC6, origin recognition complex subunit 6; helix 89.35
4ell_A411 Retinoblastoma-associated protein; cyclin fold, tu 87.14
2r7g_A347 PP110, retinoblastoma-associated protein, P105-RB, 86.79
2qdj_A304 Retinoblastoma-associated protein; cyclin fold, cy 85.63
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 85.56
4elj_A656 Retinoblastoma-associated protein; cyclin fold, tu 81.95
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
Probab=100.00  E-value=2.7e-47  Score=357.75  Aligned_cols=233  Identities=25%  Similarity=0.422  Sum_probs=212.9

Q ss_pred             cccccChhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHH
Q psy2416          24 SNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVC  103 (405)
Q Consensus        24 ~~wlft~~~l~~tps~~~gi~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~  103 (405)
                      ++|+||.+||+++||+.+|++.+.|..+|..+++||.++|..|+|++.|+++|++||||||..+++.++++++||+||||
T Consensus         3 ~~w~~t~e~l~~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~   82 (257)
T 2ivx_A            3 SRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALF   82 (257)
T ss_dssp             GGGSCCHHHHHSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHH
T ss_pred             CCeeecHHHHHhChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCcCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceeeCChHHHHHHHHHHhCC
Q psy2416         104 LASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHVKHPHKIIVTYLQVLGC  183 (405)
Q Consensus       104 LA~K~ee~~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~~~P~~~l~~~l~~l~~  183 (405)
                      ||||+||+++++.|++.+++.+.+...   ......++.|...+++|+.||..||++|+|+|+++||+.||.+|++.++.
T Consensus        83 lA~K~EE~p~~l~d~~~~~~~~~~~~~---~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~  159 (257)
T 2ivx_A           83 LAAKVEEQARKLEHVIKVAHACLHPLE---PLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRA  159 (257)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHHCTTS---CCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTC
T ss_pred             HHhccccCCcCHHHHHHHHHHHhccCC---CCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCC
Confidence            999999999999999999887754321   11123467888889999999999999999999999999999999999987


Q ss_pred             CccHHHHHHH-HHHHHhc-CCcccccCChHHHHHHHHHHHHHHcCCCCCC---Ccchhhhh--hcchhhHHHHHHHHHHH
Q psy2416         184 EKNQKLMQLA-NYMNDSL-RTDVFVRYDPETIASACIYLTARKLRIPLPR---NPAWYSLF--HVLESDIQDVCKRILRL  256 (405)
Q Consensus       184 ~~~~~l~~~A-~~l~d~~-~t~~~l~~~Ps~IAaA~i~lA~~~~~~~l~~---~~~w~~~~--~~~~~~l~~~~~~il~l  256 (405)
                      +  .++.+.| +++++++ .+++|+.|+|++||+||||+|+.++|.++|.   +..||+.|  +++.++|.+|+.+|+++
T Consensus       160 ~--~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~  237 (257)
T 2ivx_A          160 S--KDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQI  237 (257)
T ss_dssp             C--HHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHH
T ss_pred             C--cHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHH
Confidence            5  6799999 9999998 4889999999999999999999999988763   45799988  68999999999999999


Q ss_pred             hcCCC
Q psy2416         257 YTRPK  261 (405)
Q Consensus       257 y~~~~  261 (405)
                      |...+
T Consensus       238 ~~~~~  242 (257)
T 2ivx_A          238 LEKTP  242 (257)
T ss_dssp             HHTSH
T ss_pred             HHhCh
Confidence            98765
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens} Back     alignment and structure
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens} Back     alignment and structure
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens} Back     alignment and structure
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B Back     alignment and structure
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens} Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 405
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 2e-36
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 1e-35
d2i53a2110 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens 2e-29
d2ivxa2113 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapien 3e-25
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 5e-24
d1jkwa2126 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo 1e-23
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 3e-07
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 1e-05
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 7e-05
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 9e-05
d2cchb2124 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [T 2e-04
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 2e-04
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin-T2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (321), Expect = 2e-36
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 22  SLSNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQ 81
           + S      E+L  TPS   G++ + E   R     LIQ  G  L + Q+ + T  V   
Sbjct: 1   ASSRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMH 60

Query: 82  RFYYSKSFVRHPMETTAMGCVCLASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTT 141
           RFY   SF +      +   + LA+K+EE  R++  VI V H     +     T      
Sbjct: 61  RFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKC---D 117

Query: 142 QYMTLKTQVIKAERRVLKELGFCVHV 167
            Y+    +++  E  +L+ LGF + +
Sbjct: 118 AYLQQTRELVILETIMLQTLGFEITI 143
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 124 Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query405
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.98
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.92
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.81
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.79
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.79
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.78
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.78
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.77
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.77
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.27
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.15
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 99.0
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 98.88
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.73
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.55
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.53
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.48
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 98.2
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 98.19
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 97.71
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 96.92
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 96.17
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 96.13
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 95.77
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 95.43
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 95.33
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 95.26
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 94.85
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 94.69
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 94.62
d2r7ga2142 Retinoblastoma tumor suppressor domains {Human (Ho 90.82
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 90.3
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin-T2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-33  Score=234.39  Aligned_cols=141  Identities=27%  Similarity=0.411  Sum_probs=129.2

Q ss_pred             cccccChhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccCCccccchhhHHHHHHH
Q psy2416          24 SNCLLPEEKLNPTPSMLDGLDPEVETDLRIIGCELIQTAGILLKLPQVAMATGQVLFQRFYYSKSFVRHPMETTAMGCVC  103 (405)
Q Consensus        24 ~~wlft~~~l~~tps~~~gi~~~~e~~~R~~~v~~I~~v~~~L~L~~~t~~~A~~~~~Rf~~~~s~~~~~~~lva~acl~  103 (405)
                      ++|+||+++|+.+||+.+||+.++|..+|..+++||.++|..|+||+.|+++|++||||||..+++.++++++|++||||
T Consensus         3 ~~w~~t~~~l~~~pS~~~gi~~~~E~~~R~~~~~~i~~~~~~l~l~~~t~~~A~~l~~Rf~~~~s~~~~~~~~va~acl~   82 (143)
T d2ivxa1           3 SRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALF   82 (143)
T ss_dssp             GGGSCCHHHHHSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHhCcccccCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCcCHHHHHHHHHHHHHhhccCCCCcccchhHhhHHHHHHHHHHHHHHHHcCcceee
Q psy2416         104 LASKIEEAPRRIRDVINVFHHIRQVMNQKSITPMLLTTQYMTLKTQVIKAERRVLKELGFCVHV  167 (405)
Q Consensus       104 LA~K~ee~~~~l~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~E~~iL~~L~F~l~~  167 (405)
                      ||||+||.++++++++++++.+.....   ......++.|.+++++|+.||..||++|||||+|
T Consensus        83 LA~K~eE~~~~~~~ii~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~E~~iL~~L~Fdl~V  143 (143)
T d2ivxa1          83 LAAKVEEQARKLEHVIKVAHACLHPLE---PLLDTKCDAYLQQTRELVILETIMLQTLGFEITI  143 (143)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHHCTTS---CCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             HHHHhccccccHHHHHHHHHHHhcccc---hhhhhchhhhHHHHHHHHHHHHHHHHHcCCeeeC
Confidence            999999999999999999887754321   1112345678899999999999999999999986
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2r7ga2 a.74.1.3 (A:644-785) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure