Psyllid ID: psy2417
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 391 | 2.2.26 [Sep-21-2011] | |||||||
| Q91WC3 | 697 | Long-chain-fatty-acid--Co | yes | N/A | 0.805 | 0.451 | 0.450 | 1e-77 | |
| P41216 | 699 | Long-chain-fatty-acid--Co | no | N/A | 0.877 | 0.490 | 0.401 | 8e-77 | |
| Q9UKU0 | 697 | Long-chain-fatty-acid--Co | yes | N/A | 0.856 | 0.480 | 0.429 | 3e-75 | |
| P18163 | 699 | Long-chain-fatty-acid--Co | yes | N/A | 0.892 | 0.499 | 0.402 | 7e-75 | |
| Q8JZR0 | 683 | Long-chain-fatty-acid--Co | no | N/A | 0.792 | 0.453 | 0.451 | 8e-75 | |
| P33124 | 697 | Long-chain-fatty-acid--Co | no | N/A | 0.808 | 0.453 | 0.443 | 9e-75 | |
| O88813 | 683 | Long-chain-fatty-acid--Co | no | N/A | 0.792 | 0.453 | 0.442 | 2e-74 | |
| Q9ULC5 | 683 | Long-chain-fatty-acid--Co | no | N/A | 0.800 | 0.458 | 0.438 | 2e-73 | |
| Q9JID6 | 698 | Long-chain-fatty-acid--Co | no | N/A | 0.803 | 0.449 | 0.421 | 7e-71 | |
| P33121 | 698 | Long-chain-fatty-acid--Co | no | N/A | 0.803 | 0.449 | 0.417 | 1e-70 |
| >sp|Q91WC3|ACSL6_MOUSE Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 290 bits (742), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 203/326 (62%), Gaps = 11/326 (3%)
Query: 73 KFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLL 132
+ L+ YDD +T+Y FR+G S NG CLG+R+ +PYQW+ Y + RA GSGLL
Sbjct: 80 QLLTHYYDDARTMYQVFRRGLSISGNGPCLGFRKP-EQPYQWLSYQEVAKRAEFLGSGLL 138
Query: 133 GLGVNPGS--FVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVL 190
G+ FVG+++QN PEWII E Y YSM++V LYDTLGP + ++IIN A+I +
Sbjct: 139 QHDCKVGTEQFVGVFAQNRPEWIIAELACYTYSMVVVPLYDTLGPGSISYIINTADICTV 198
Query: 191 IVDDDSKCNQIIDRAPR----CLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQK 246
IVD K +++ R LK +I + A +R + ++I IE G +
Sbjct: 199 IVDKPHKATLLLEHVERKETPGLKLVILMEPFEDALRERGKKCGVDIKSMQAIEDCGREN 258
Query: 247 MFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHR--PKYSDVLI 304
VPP+P DL +C+TSGTTGNPKG MLTHGNV+A S L++++ P+ DVLI
Sbjct: 259 HHAPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADFSG-FLKVTEKVIFPRQDDVLI 317
Query: 305 SFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV 364
SFLPLAHM ER +S ++ GG +G++ GDI+ L++DMK L+PTI P VPRLLNRMYDK+
Sbjct: 318 SFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKALRPTIFPVVPRLLNRMYDKI 377
Query: 365 MAQIRPSFIKRLMFNMAMGSKENEIK 390
Q S +KR + A K+ E++
Sbjct: 378 FHQADTS-LKRWLLEFAAKRKQAEVR 402
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid. Mus musculus (taxid: 10090) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 287 bits (735), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 159/396 (40%), Positives = 225/396 (56%), Gaps = 53/396 (13%)
Query: 8 PPAIRPPVDLNNQSEIIREQNLALVGTNETMRLRFYYQSDRSSNLRGRGREVVRVSKFFS 67
P A++PP DL+ QS + + GT + +R RS+ L
Sbjct: 48 PKALKPPCDLSMQS-------VEIAGTTDGIR--------RSAVLE-------------- 78
Query: 68 GASEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNF 127
+ K L YDDV+T+YD F++G + SNNG CLG R+ ++PY+WI Y + A
Sbjct: 79 ---DDKLLVYYYDDVRTMYDGFQRGIQVSNNGPCLGSRKP-NQPYEWISYKEVAELAECI 134
Query: 128 GSGLLGLGVNPGS--FVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQA 185
GSGL+ G P S F+G++SQN PEW+I EQG + YSM++V LYDTLG DA +I+N+A
Sbjct: 135 GSGLIQKGFKPCSEQFIGLFSQNRPEWVIVEQGCFSYSMVVVPLYDTLGADAITYIVNKA 194
Query: 186 EISVLIVDDDSKCNQIID----RAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIER 241
E+SV+ D K +++ + CLK I+ + ++R + +EII +E
Sbjct: 195 ELSVIFADKPEKAKLLLEGVENKLTPCLKIIVIMDSYGSDLVERGKKCGVEIISLKALED 254
Query: 242 VGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI-------AAISAALLQLSD 294
+G + PP+P DL IC+TSGTTGNPKG M+TH N+I A +A + +D
Sbjct: 255 LGRVNRVKPKPPEPEDLAIICFTSGTTGNPKGAMITHQNIINDCSGFIKATESAFIASTD 314
Query: 295 HRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVP 354
DVLISFLPLAHM E E M G IG++ GDI+ L +D+K L+PTI P VP
Sbjct: 315 ------DVLISFLPLAHMFETVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVP 368
Query: 355 RLLNRMYDKVMAQIRPSFIKRLMFNMAMGSKENEIK 390
RLLNRM+D++ Q S +KR + + A KE E++
Sbjct: 369 RLLNRMFDRIFGQANTS-LKRWLLDFASKRKEAELR 403
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9UKU0|ACSL6_HUMAN Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 282 bits (721), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 152/354 (42%), Positives = 210/354 (59%), Gaps = 19/354 (5%)
Query: 45 QSDRSSNLRGRGREVVRVSKFFSGASEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGW 104
QS+ + G R V+ S + L+ YDD +T+Y FR+G S NG CLG+
Sbjct: 60 QSEEVEDSGGARRSVI--------GSGPQLLTHYYDDARTMYQVFRRGLSISGNGPCLGF 111
Query: 105 RQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGS--FVGIYSQNCPEWIITEQGAYCY 162
R+ +PYQW+ Y + RA GSGLL + F+G+++QN PEWII E Y Y
Sbjct: 112 RKP-KQPYQWLSYQEVADRAEFLGSGLLQHNCKACTDQFIGVFAQNRPEWIIVELACYTY 170
Query: 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR----CLKKIISIREV 218
SM++V LYDTLGP A +IIN A+IS +IVD K +++ R LK II +
Sbjct: 171 SMVVVPLYDTLGPGAIRYIINTADISTVIVDKPQKAVLLLEHVERKETPGLKLIILMDPF 230
Query: 219 RMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTH 278
A +R + + I +E G + VPP+P DL +C+TSGTTGNPKG MLTH
Sbjct: 231 EEALKERGQKCGVVIKSMQAVEDCGQENHQAPVPPQPDDLSIVCFTSGTTGNPKGAMLTH 290
Query: 279 GNVIAAISAALLQLSDHR--PKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIK 336
GNV+A S L++++ P+ DVLISFLPLAHM ER +S ++ GG +G++ GDI+
Sbjct: 291 GNVVADFSG-FLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIR 349
Query: 337 NLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSKENEIK 390
L++DMK L PTI P VPRLLNRMYDK+ +Q + +KR + A K+ E++
Sbjct: 350 LLSDDMKALCPTIFPVVPRLLNRMYDKIFSQAN-TPLKRWLLEFAAKRKQAEVR 402
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P18163|ACSL1_RAT Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norvegicus GN=Acsl1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (718), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 157/390 (40%), Positives = 220/390 (56%), Gaps = 41/390 (10%)
Query: 8 PPAIRPPVDLNNQSEIIREQNLALVGTNETMRLRFYYQSDRSSNLRGRGREVVRVSKFFS 67
P A++PP DL+ QS + + GT E +R RS+ L
Sbjct: 48 PKALKPPCDLSMQS-------VEVTGTTEGVR--------RSAVLE-------------- 78
Query: 68 GASEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNF 127
+ K L YDDV+T+YD F++G + SN+G CLG R+ ++PY+WI Y Q A
Sbjct: 79 ---DDKLLLYYYDDVRTMYDGFQRGIQVSNDGPCLGSRKP-NQPYEWISYKQVAEMAECI 134
Query: 128 GSGLLGLGVNPGS--FVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQA 185
GS L+ G P S F+GI+SQN PEW+ EQG + YSM++V LYDTLG DA +I+N+A
Sbjct: 135 GSALIQKGFKPCSEQFIGIFSQNRPEWVTIEQGCFTYSMVVVPLYDTLGTDAITYIVNKA 194
Query: 186 EISVLIVDDDSKCNQIID----RAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIER 241
E+SV+ D K +++ + CLK I+ + ++R + +EII +E
Sbjct: 195 ELSVIFADKPEKAKLLLEGVENKLTPCLKIIVIMDSYDNDLVERGQKCGVEIIGLKALED 254
Query: 242 VGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQL-SDHRPKYS 300
+G + PP+P DL IC+TSGTTGNPKG M+TH N++ S + S
Sbjct: 255 LGRVNRTKPKPPEPEDLAIICFTSGTTGNPKGAMVTHQNIMNDCSGFIKATESAFIASPE 314
Query: 301 DVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRM 360
DVLISFLPLAHM E E M G IG++ GDI+ L +D+K L+PTI P VPRLLNRM
Sbjct: 315 DVLISFLPLAHMFETVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRM 374
Query: 361 YDKVMAQIRPSFIKRLMFNMAMGSKENEIK 390
+D++ Q S +KR + + A KE E++
Sbjct: 375 FDRIFGQANTS-VKRWLLDFASKRKEAELR 403
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8JZR0|ACSL5_MOUSE Long-chain-fatty-acid--CoA ligase 5 OS=Mus musculus GN=Acsl5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (718), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 202/319 (63%), Gaps = 9/319 (2%)
Query: 79 YDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLL--GLGV 136
+ D KTLY+ F++G S+NG CLG+R+ ++PY+WI Y Q RA GS LL G
Sbjct: 71 FSDAKTLYENFQRGLAVSDNGPCLGYRKP-NQPYKWISYKQVSDRAEYLGSCLLHKGYKS 129
Query: 137 NPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDS 196
+ FVGI++QN PEW+I+E Y YSM+ V LYDTLG +A F+IN+A+I V+I D
Sbjct: 130 SQDQFVGIFAQNRPEWVISELACYTYSMVAVPLYDTLGTEAIIFVINRADIPVVICDTPQ 189
Query: 197 KCNQIIDRAPRCL----KKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVP 252
K +++ + L K II + M+R +E++ + E +G + + VP
Sbjct: 190 KATMLVENVEKGLTPGLKTIILMDPFDDDLMKRGEKCGVEMLSLHDAENIGKENFKKPVP 249
Query: 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD-HRPKYSDVLISFLPLAH 311
PKP DL IC+TSGTTG+PKG MLTH NV++ ++A L L +P DV IS+LPLAH
Sbjct: 250 PKPEDLSVICFTSGTTGDPKGAMLTHENVVSNMAAFLKFLEPIFQPTSDDVTISYLPLAH 309
Query: 312 MLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPS 371
M ER + +F GG IG++ GDI+ L +DMK LKPT+ P VPRLLNR+YDKV + +
Sbjct: 310 MFERLVQGILFSCGGKIGFFQGDIRLLPDDMKALKPTVFPTVPRLLNRVYDKVQNEAKTP 369
Query: 372 FIKRLMFNMAMGSKENEIK 390
+K+ + N+A+ SK NE+K
Sbjct: 370 -LKKFLLNLAIISKFNEVK 387
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL (By similarity). May have a role in the survival of glioma cells (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P33124|ACSL6_RAT Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (717), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 144/325 (44%), Positives = 198/325 (60%), Gaps = 9/325 (2%)
Query: 73 KFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLL 132
+ L+ YDD +T+Y FR+G S NG CLG+R+ +PYQW+ Y + RA GSGLL
Sbjct: 80 QLLTHYYDDARTMYQVFRRGLSISGNGPCLGFRKP-EQPYQWLSYQEVAKRAEFLGSGLL 138
Query: 133 GLGVNPGS--FVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVL 190
G+ F+G+++QN PEWII E Y YSM++V LYDTLGP + +IIN A+I +
Sbjct: 139 QHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPLYDTLGPGSIRYIINTADICTV 198
Query: 191 IVDDDSKCNQIIDRAPR----CLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQK 246
IVD K +++ R LK +I + A +R + ++I IE G +
Sbjct: 199 IVDKPHKAILLLEHVERKETPGLKLVILMEPFDDALRERGKKCGVDIKSMQAIEDSGQEN 258
Query: 247 MFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAAL-LQLSDHRPKYSDVLIS 305
VPP+P DL +C+TSGTTGNPKG MLTHGNV+A S L + S P +DV S
Sbjct: 259 HRVPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADFSGFLKVTESQWAPTCADVHFS 318
Query: 306 FLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM 365
+LPLAHM ER +S ++ GG +G++ GDI+ L++DMK L+PTI P VPRLLNRMYDK+
Sbjct: 319 YLPLAHMFERMVQSVVYCHGGRVGFFQGDIRLLSDDMKALRPTIFPVVPRLLNRMYDKIF 378
Query: 366 AQIRPSFIKRLMFNMAMGSKENEIK 390
Q S +KR + A K+ E++
Sbjct: 379 HQADTS-LKRWLLEFAAKRKQAEVR 402
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O88813|ACSL5_RAT Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (715), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 141/319 (44%), Positives = 203/319 (63%), Gaps = 9/319 (2%)
Query: 79 YDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNP 138
+ D KTLY+ F++G S+NG CLG+R+ ++PY+WI Y Q RA GS LL G P
Sbjct: 71 FSDAKTLYEVFQRGLAVSDNGPCLGYRKP-NQPYKWISYKQVSDRAEYLGSCLLHKGYKP 129
Query: 139 GS--FVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDS 196
F+GI++QN PEW+I+E Y YSM+ V LYDTLG +A ++IN+A+ISV+I D
Sbjct: 130 SQDQFIGIFAQNRPEWVISELACYTYSMVAVPLYDTLGAEAIIYVINRADISVVICDTPQ 189
Query: 197 KCNQIIDRAPR----CLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVP 252
K +I+ + LK +I + M+R IE++ + E +G + + +P
Sbjct: 190 KATMLIENVEKDLTPGLKTVILMDPFDDDLMKRGEKCGIEMLSLHDAENLGKENFKKPMP 249
Query: 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD-HRPKYSDVLISFLPLAH 311
P P DL IC+TSGTTG+PKG MLTH N+++ ++A L L +P DV IS+LPLAH
Sbjct: 250 PNPEDLSVICFTSGTTGDPKGAMLTHQNIVSNMAAFLKFLEPIFQPTPEDVTISYLPLAH 309
Query: 312 MLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPS 371
M ER + +F GG IG++ GDI+ L +DMK LKPT+ P VPRLLNR+YDKV + + +
Sbjct: 310 MFERLVQGVIFSCGGKIGFFQGDIRLLPDDMKALKPTVFPTVPRLLNRVYDKVQNEAK-T 368
Query: 372 FIKRLMFNMAMGSKENEIK 390
+K+ + N+A+ SK NE++
Sbjct: 369 PLKKFLLNLAIISKFNEVR 387
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL at the villus tip of the crypt-villus axis of the small intestine (By similarity). May have a role in the survival of glioma cells (By similarity). May activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage. It was suggested that it may also stimulate fatty acid oxidation. Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9ULC5|ACSL5_HUMAN Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (707), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 142/324 (43%), Positives = 205/324 (63%), Gaps = 11/324 (3%)
Query: 76 STLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLL--G 133
S + D KT+Y+ F++G S+NG CLG+R+ ++PY+W+ Y Q RA GS LL G
Sbjct: 68 SCCFSDAKTMYEVFQRGLAVSDNGPCLGYRKP-NQPYRWLSYKQVSDRAEYLGSCLLHKG 126
Query: 134 LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVD 193
+P FVGI++QN PEWII+E Y YSM+ V LYDTLGP+A I+N+A+I+++I D
Sbjct: 127 YKSSPDQFVGIFAQNRPEWIISELACYTYSMVAVPLYDTLGPEAIVHIVNKADIAMVICD 186
Query: 194 DDSKCNQIIDRAPR----CLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFE 249
K +I + LK II + QR IEI+ + E +G + +
Sbjct: 187 TPQKALVLIGNVEKGFTPSLKVIILMDPFDDDLKQRGEKSGIEILSLYDAENLGKEHFRK 246
Query: 250 EVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDH--RPKYSDVLISFL 307
VPP P DL IC+TSGTTG+PKG M+TH N+++ +AA L+ +H P DV IS+L
Sbjct: 247 PVPPSPEDLSVICFTSGTTGDPKGAMITHQNIVSN-AAAFLKCVEHAYEPTPDDVAISYL 305
Query: 308 PLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQ 367
PLAHM ER ++ ++ G +G++ GDI+ L +DMKTLKPT+ PAVPRLLNR+YDKV +
Sbjct: 306 PLAHMFERIVQAVVYSCGARVGFFQGDIRLLADDMKTLKPTLFPAVPRLLNRIYDKVQNE 365
Query: 368 IRPSFIKRLMFNMAMGSKENEIKK 391
+ + +K+ + +A+ SK E++K
Sbjct: 366 AK-TPLKKFLLKLAVSSKFKELQK 388
|
Acyl-CoA synthetases (ACSL) activate long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL. May have a role in the survival of glioma cells. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9JID6|ACSL1_CAVPO Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (684), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 136/323 (42%), Positives = 197/323 (60%), Gaps = 9/323 (2%)
Query: 75 LSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLL-- 132
L YDDV+TLYD F++G + SNNG CLG R+ +PY+W+ Y Q + GS LL
Sbjct: 82 LVYFYDDVRTLYDVFQRGIQVSNNGPCLGSRKP-DQPYEWLSYKQVEDLSECIGSALLQK 140
Query: 133 GLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIV 192
G +P F+GI++QN PEW+I EQ + YSM++V LYDTLG DA +I+N+AE+SV+
Sbjct: 141 GFQASPDQFIGIFAQNRPEWVIIEQACFAYSMVVVPLYDTLGADAITYIVNKAELSVIFA 200
Query: 193 DDDSKCNQIID----RAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMF 248
D K +++ + LK I+ + +++ + +E+I +E +G
Sbjct: 201 DKPEKARILLESVENKLTPGLKIIVVMDSYGSELVEQGKKCGVEVISLKAMEGLGRANRR 260
Query: 249 EEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRP-KYSDVLISFL 307
+ PP+P DL IC+TSGTTGNPKG M+TH NV++ SA + SD+ ISFL
Sbjct: 261 KPKPPEPDDLAVICFTSGTTGNPKGAMITHKNVVSDCSAFVKATEKALVLNASDIHISFL 320
Query: 308 PLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQ 367
PLAHM E+ + M G IG++ GDI+ L +D+K L+PTI P VPRLLNRM+D++ AQ
Sbjct: 321 PLAHMYEQLLQCVMLCHGAKIGFFQGDIRLLMDDLKALQPTIFPVVPRLLNRMFDRIFAQ 380
Query: 368 IRPSFIKRLMFNMAMGSKENEIK 390
+ +KR + + A KE E++
Sbjct: 381 ANTT-VKRWLLDFASKRKEAELR 402
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate. Cavia porcellus (taxid: 10141) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P33121|ACSL1_HUMAN Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (682), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 135/323 (41%), Positives = 194/323 (60%), Gaps = 9/323 (2%)
Query: 75 LSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLL-- 132
L YDDV TLY+ F++G + SNNG CLG R+ +PY+W+ Y Q + GS L+
Sbjct: 82 LVYFYDDVTTLYEGFQRGIQVSNNGPCLGSRKP-DQPYEWLSYKQVAELSECIGSALIQK 140
Query: 133 GLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIV 192
G P F+GI++QN PEW+I EQG + YSM+IV LYDTLG +A +I+N+AE+S++ V
Sbjct: 141 GFKTAPDQFIGIFAQNRPEWVIIEQGCFAYSMVIVPLYDTLGNEAITYIVNKAELSLVFV 200
Query: 193 DDDSKCNQIIDRAPR----CLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMF 248
D K +++ LK I+ + ++R + +E+ +E +G
Sbjct: 201 DKPEKAKLLLEGVENKLIPGLKIIVVMDAYGSELVERGQRCGVEVTSMKAMEDLGRANRR 260
Query: 249 EEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDH-RPKYSDVLISFL 307
+ PP P DL IC+TSGTTGNPKG M+TH N+++ SA + + P D LISFL
Sbjct: 261 KPKPPAPEDLAVICFTSGTTGNPKGAMVTHRNIVSDCSAFVKATENTVNPCPDDTLISFL 320
Query: 308 PLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQ 367
PLAHM ER E M G IG++ GDI+ L +D+K L+PT+ P VPRLLNRM+D++ Q
Sbjct: 321 PLAHMFERVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTVFPVVPRLLNRMFDRIFGQ 380
Query: 368 IRPSFIKRLMFNMAMGSKENEIK 390
+ +KR + + A KE E++
Sbjct: 381 ANTT-LKRWLLDFASKRKEAELR 402
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 391 | ||||||
| 383857835 | 657 | PREDICTED: long-chain-fatty-acid--CoA li | 0.923 | 0.549 | 0.597 | 1e-144 | |
| 48105753 | 657 | PREDICTED: long-chain-fatty-acid--CoA li | 0.923 | 0.549 | 0.590 | 1e-144 | |
| 380021425 | 657 | PREDICTED: long-chain-fatty-acid--CoA li | 0.923 | 0.549 | 0.587 | 1e-143 | |
| 350422663 | 657 | PREDICTED: long-chain-fatty-acid--CoA li | 0.923 | 0.549 | 0.587 | 1e-143 | |
| 307211960 | 681 | Long-chain-fatty-acid--CoA ligase 1 [Har | 0.859 | 0.493 | 0.642 | 1e-138 | |
| 193624896 | 658 | PREDICTED: long-chain-fatty-acid--CoA li | 0.879 | 0.522 | 0.671 | 1e-138 | |
| 307178356 | 633 | Long-chain-fatty-acid--CoA ligase 1 [Cam | 0.861 | 0.532 | 0.646 | 1e-137 | |
| 242009014 | 681 | Long-chain-fatty-acid--CoA ligase, putat | 0.905 | 0.519 | 0.575 | 1e-137 | |
| 91088831 | 721 | PREDICTED: similar to CG3961 CG3961-PA [ | 0.859 | 0.466 | 0.639 | 1e-137 | |
| 332026916 | 623 | Long-chain-fatty-acid--CoA ligase 1 [Acr | 0.836 | 0.524 | 0.635 | 1e-133 |
| >gi|383857835|ref|XP_003704409.1| PREDICTED: long-chain-fatty-acid--CoA ligase 1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 235/393 (59%), Positives = 303/393 (77%), Gaps = 32/393 (8%)
Query: 1 MSCTSCSPPAIRPPVDLNNQSEIIREQNLALVGTNETMRLRFYYQSDRSSNLRGRGREVV 60
M+ T SP IRPP+DL +QS+ ++ G +++
Sbjct: 1 MTSTCFSPEPIRPPIDLTDQSDTVK------------------------------GTDLI 30
Query: 61 RVSKFFSGASEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQA 120
RVS+FF + EGKF+S +++D +TLYD FRKGAKESNNG CLGWR ++PYQW+HYN+A
Sbjct: 31 RVSRFFKDSKEGKFVSYVHEDTRTLYDGFRKGAKESNNGPCLGWRDGPTKPYQWLHYNEA 90
Query: 121 LLRARNFGSGLLGLGVNPGS--FVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDAC 178
LLRA+NFGSGL+ LG+ PGS FVG+YSQNCPEWI+TEQ Y YS+++V LYDTLGPDAC
Sbjct: 91 LLRAKNFGSGLVTLGLTPGSHTFVGLYSQNCPEWILTEQACYTYSLVVVPLYDTLGPDAC 150
Query: 179 AFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDE 238
AFIINQAEI++++ ++D KCN ++D+APRCL+K++ I+E R T QRA++R +E+++F++
Sbjct: 151 AFIINQAEINLVVCENDKKCNLLLDKAPRCLRKMVVIKETRQTTTQRAKNRGVELLKFED 210
Query: 239 IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPK 298
+ER+GAQK E PPK DLCTICYTSGTTGNPKGVMLTH NVIAAISA LLQL +HRP
Sbjct: 211 VERLGAQKNHPEAPPKVNDLCTICYTSGTTGNPKGVMLTHQNVIAAISAVLLQLGEHRPS 270
Query: 299 YSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLN 358
Y D +ISFLPLAHMLER CE+ M++VGGS+G+YSGDIK L EDMK L+PT+MPAVPRLLN
Sbjct: 271 YKDTMISFLPLAHMLERCCENGMYMVGGSVGFYSGDIKRLPEDMKALRPTVMPAVPRLLN 330
Query: 359 RMYDKVMAQIRPSFIKRLMFNMAMGSKENEIKK 391
RMYDK+ +++ S KRL+F+M M +KE +IKK
Sbjct: 331 RMYDKIQTELQNSCFKRLIFSMGMHAKEAQIKK 363
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|48105753|ref|XP_395996.1| PREDICTED: long-chain-fatty-acid--CoA ligase 1-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 232/393 (59%), Positives = 306/393 (77%), Gaps = 32/393 (8%)
Query: 1 MSCTSCSPPAIRPPVDLNNQSEIIREQNLALVGTNETMRLRFYYQSDRSSNLRGRGREVV 60
M+ SPP IRPP+DLN+QS+ + +G +++
Sbjct: 1 MTSGCFSPPPIRPPIDLNDQSDTV------------------------------KGTDLI 30
Query: 61 RVSKFFSGASEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQA 120
+VS+F+ + EGKF+S LY+D +TLYD FRKGAKESNNG CLGWR ++PYQW+HYN+
Sbjct: 31 KVSRFYKDSKEGKFVSFLYEDTRTLYDGFRKGAKESNNGPCLGWRDGPNKPYQWLHYNET 90
Query: 121 LLRARNFGSGLLGLGVNPGS--FVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDAC 178
LLRA+NFGSGL+ LG+ PGS +G+YSQNCPEWI+TEQ Y YS+++V LYDTLGPDAC
Sbjct: 91 LLRAKNFGSGLVSLGLMPGSHTLIGLYSQNCPEWILTEQACYTYSLVVVPLYDTLGPDAC 150
Query: 179 AFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDE 238
AFIINQAEI++++V++D+KCN ++D+APRCL+K++ I+E R T QRA++R +E+++FD+
Sbjct: 151 AFIINQAEINLVVVENDTKCNLLLDKAPRCLRKLVVIKETRQTTNQRAKNRGVELLKFDD 210
Query: 239 IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPK 298
+ER+GAQK EVPPK TDLCTI YTSGTTGNPKGVMLTH NVIA ISA L+QL +H+P
Sbjct: 211 VERLGAQKNHPEVPPKSTDLCTISYTSGTTGNPKGVMLTHQNVIAGISAVLVQLGEHKPS 270
Query: 299 YSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLN 358
Y D +ISFLPLAHMLER CE+ M++VGGS+G+YSGDIK L+EDMK L+PT+MPAVPRLLN
Sbjct: 271 YKDTMISFLPLAHMLERCCENGMYMVGGSVGFYSGDIKRLSEDMKALRPTVMPAVPRLLN 330
Query: 359 RMYDKVMAQIRPSFIKRLMFNMAMGSKENEIKK 391
RMYDK+ +++ S +K+L+F++ M +KE EIKK
Sbjct: 331 RMYDKIQTELQNSCLKKLVFSLGMRAKEAEIKK 363
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380021425|ref|XP_003694566.1| PREDICTED: long-chain-fatty-acid--CoA ligase 1-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 231/393 (58%), Positives = 305/393 (77%), Gaps = 32/393 (8%)
Query: 1 MSCTSCSPPAIRPPVDLNNQSEIIREQNLALVGTNETMRLRFYYQSDRSSNLRGRGREVV 60
M+ SPP IRPP+DLN+Q + + +G +++
Sbjct: 1 MTSGCFSPPPIRPPIDLNDQCDTV------------------------------KGTDLI 30
Query: 61 RVSKFFSGASEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQA 120
+VS+F+ + EGKF+S LY+D +TLYD FRKGAKESNNG CLGWR ++PYQW+HYN+
Sbjct: 31 KVSRFYKDSKEGKFVSFLYEDTRTLYDGFRKGAKESNNGPCLGWRDGPNKPYQWLHYNET 90
Query: 121 LLRARNFGSGLLGLGVNPGS--FVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDAC 178
LLRA+NFGSGL+ LG+ PGS +G+YSQNCPEWI+TEQ Y YS+++V LYDTLGPDAC
Sbjct: 91 LLRAKNFGSGLVSLGLMPGSHTLIGLYSQNCPEWILTEQACYTYSLVVVPLYDTLGPDAC 150
Query: 179 AFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDE 238
AFIINQAEI++++V++D+KCN ++D+APRCL+KI+ I+E R T QRA++R +E+++FD+
Sbjct: 151 AFIINQAEINLVVVENDTKCNLLLDKAPRCLRKIVVIKETRQTTNQRAKNRGVELLKFDD 210
Query: 239 IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPK 298
+ER+GAQK EVPPK TDLCTI YTSGTTGNPKGVMLTH NVIA ISA L+QL +H+P
Sbjct: 211 VERLGAQKNHPEVPPKSTDLCTISYTSGTTGNPKGVMLTHQNVIAGISAVLVQLGEHKPS 270
Query: 299 YSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLN 358
Y D +ISFLPLAHMLER CE+ M++VGGS+G+YSGDIK L++DMK L+PT+MPAVPRLLN
Sbjct: 271 YKDTMISFLPLAHMLERCCENGMYMVGGSVGFYSGDIKRLSDDMKALRPTVMPAVPRLLN 330
Query: 359 RMYDKVMAQIRPSFIKRLMFNMAMGSKENEIKK 391
RMYDK+ +++ S +K+L+F++ M +KE EIKK
Sbjct: 331 RMYDKIQTELQNSCLKKLVFSLGMRAKEAEIKK 363
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350422663|ref|XP_003493242.1| PREDICTED: long-chain-fatty-acid--CoA ligase 1-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 231/393 (58%), Positives = 304/393 (77%), Gaps = 32/393 (8%)
Query: 1 MSCTSCSPPAIRPPVDLNNQSEIIREQNLALVGTNETMRLRFYYQSDRSSNLRGRGREVV 60
M+ + SPP +RPP+D+++QS+ + +G +++
Sbjct: 1 MTSSCFSPPPLRPPIDISDQSDTV------------------------------KGTDLI 30
Query: 61 RVSKFFSGASEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQA 120
+VS+F+ + EGKF+S LY+D +TLYD FRKGAKESNNG CLGWR ++PYQW+HYN+
Sbjct: 31 KVSRFYKDSKEGKFVSFLYEDTRTLYDGFRKGAKESNNGPCLGWRDGPNKPYQWLHYNET 90
Query: 121 LLRARNFGSGLLGLGVNPGS--FVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDAC 178
LLRA+NFGSGL+ LG+ PGS VG+YSQNCPEWI+ EQ Y YS+ +V LYDTLGPDAC
Sbjct: 91 LLRAKNFGSGLVSLGLMPGSHALVGLYSQNCPEWILAEQACYTYSLAVVPLYDTLGPDAC 150
Query: 179 AFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDE 238
AFIINQAEI++++ ++DSKCN ++D+APRCL+K++ I+E R AT QRA++R +E+ +F+E
Sbjct: 151 AFIINQAEINLVVCENDSKCNLLLDKAPRCLRKMVVIKETRQATNQRAKNRGVELFKFEE 210
Query: 239 IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPK 298
+ER+GAQK EVPPK TDLCTICYTSGTTGNPKGVMLTH NV+A+ISA L+QL +HRP
Sbjct: 211 VERIGAQKNHPEVPPKTTDLCTICYTSGTTGNPKGVMLTHQNVMASISAVLIQLGEHRPS 270
Query: 299 YSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLN 358
Y D +ISFLPLAHMLER CE+ M++VG S+G+YSGDIK L +DMK L+PT+MPAVPRLLN
Sbjct: 271 YKDTMISFLPLAHMLERCCENGMYMVGASVGFYSGDIKRLPDDMKALRPTVMPAVPRLLN 330
Query: 359 RMYDKVMAQIRPSFIKRLMFNMAMGSKENEIKK 391
RMYDKV +++ S +KRL+F++ M +KE EIKK
Sbjct: 331 RMYDKVQTELQSSCLKRLVFSLGMRAKEAEIKK 363
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307211960|gb|EFN87872.1| Long-chain-fatty-acid--CoA ligase 1 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 217/338 (64%), Positives = 285/338 (84%), Gaps = 2/338 (0%)
Query: 56 GREVVRVSKFFSGASEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWI 115
G E++RVS+F+ A +GKF+S LY+D +TLYD FR+GA ESNNG CLGWR+ ++PYQW+
Sbjct: 50 GTELIRVSRFYKEAKDGKFVSFLYEDTRTLYDGFRRGANESNNGPCLGWREEPNKPYQWL 109
Query: 116 HYNQALLRARNFGSGLLGLGVNPG--SFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTL 173
HYN+ LLRA+NFGSGL+ LG++PG + +G+YSQNCPEWI+TEQ Y YS+++V LYDTL
Sbjct: 110 HYNETLLRAKNFGSGLVSLGLSPGPQTLIGLYSQNCPEWILTEQACYAYSLVVVPLYDTL 169
Query: 174 GPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEI 233
GPDACA+IINQA+I++++ +DD KCN ++D+APRCL+K++ +++ R AT QRA++R IE+
Sbjct: 170 GPDACAYIINQADINLVVCEDDQKCNLLLDKAPRCLRKLVVVKQTRPATKQRAKNRGIEL 229
Query: 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLS 293
RF +IE++GAQK E+PPK +DLCTICYTSGTTGNPKGVMLTH NV+A I A L+QL
Sbjct: 230 YRFVDIEQLGAQKNHPELPPKVSDLCTICYTSGTTGNPKGVMLTHQNVMAGICAVLMQLG 289
Query: 294 DHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAV 353
DHR D +ISFLPLAHMLER+CE+AM++VGGS+G+YSGDIK L EDMK L PT+MPAV
Sbjct: 290 DHRVTSKDTMISFLPLAHMLERSCENAMYMVGGSVGFYSGDIKRLAEDMKALGPTVMPAV 349
Query: 354 PRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSKENEIKK 391
PRLLNR+YDKV ++++ SF+KR++FNM M +KE EIKK
Sbjct: 350 PRLLNRIYDKVQSELQSSFLKRMIFNMGMQAKETEIKK 387
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193624896|ref|XP_001949298.1| PREDICTED: long-chain-fatty-acid--CoA ligase 1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/347 (67%), Positives = 290/347 (83%), Gaps = 3/347 (0%)
Query: 47 DRSSNLRGRGREVVRVSKFFSGASEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQ 106
D S+L +G E+V VSKF+ EGKFLS + D +TLY+ FRKGAK SNNG+CLGWR+
Sbjct: 21 DHQSDLL-KGPEIVHVSKFYKEGIEGKFLSNIAPDARTLYETFRKGAKVSNNGKCLGWRE 79
Query: 107 NISRPYQWIHYNQALLRARNFGSGLLGLGVNPGS--FVGIYSQNCPEWIITEQGAYCYSM 164
NIS+P+QWIHYN+ LLRARNFGSGLLGLG + F+GI+SQNCPEWI+TEQ AYC+SM
Sbjct: 80 NISKPFQWIHYNETLLRARNFGSGLLGLGFPKANQIFLGIFSQNCPEWILTEQAAYCFSM 139
Query: 165 IIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQ 224
++V LYDTLGP+AC+FIINQAEISV++VD D KCNQ++DR+P+CL++II IR R +T Q
Sbjct: 140 VVVPLYDTLGPEACSFIINQAEISVVVVDTDDKCNQLLDRSPKCLRRIIVIRGARPSTSQ 199
Query: 225 RARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAA 284
+A++R +E++ F+E+E+ GA K + E PPKPTDLCTICYTSGTTG PKGVMLTHGNV+AA
Sbjct: 200 KAKNRGVELLTFEEVEKAGASKTYPEQPPKPTDLCTICYTSGTTGLPKGVMLTHGNVVAA 259
Query: 285 ISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKT 344
+SA L+QLS +RP DV+IS+LPLAHMLER CE+ M+LVGGS+G+Y+G+IK L EDMK
Sbjct: 260 VSAVLVQLSQYRPSVGDVMISYLPLAHMLERCCENGMYLVGGSVGFYNGNIKFLFEDMKV 319
Query: 345 LKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSKENEIKK 391
LKPTIMP+VPRLLNR+Y+ MA I P F KR+MFNMA+ SKENEIKK
Sbjct: 320 LKPTIMPSVPRLLNRIYETEMANIVPRFFKRVMFNMALRSKENEIKK 366
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307178356|gb|EFN67105.1| Long-chain-fatty-acid--CoA ligase 1 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 219/339 (64%), Positives = 279/339 (82%), Gaps = 2/339 (0%)
Query: 55 RGREVVRVSKFFSGASEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQW 114
+G E +RVSKF+ EGKF++ LY+D TLYD FR+GAKESNNG CLGWR ++PYQW
Sbjct: 1 QGNEHIRVSKFYKEGREGKFVTFLYEDTLTLYDGFRRGAKESNNGPCLGWRDGYNKPYQW 60
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGS--FVGIYSQNCPEWIITEQGAYCYSMIIVALYDT 172
+HYN+ALLRA+NFGSGLL LG+ PGS VG+YSQNCPEW++ EQ Y YS+++V LYDT
Sbjct: 61 LHYNEALLRAKNFGSGLLSLGLAPGSQTLVGLYSQNCPEWVLVEQACYTYSLVVVPLYDT 120
Query: 173 LGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIE 232
LGPDACA+IINQAEI++++ +DD KCN ++D+APRCL+K++ ++E R AT QRA++R +E
Sbjct: 121 LGPDACAYIINQAEINLVVCEDDQKCNLLLDKAPRCLRKLVVVKETRPATNQRAKNRGVE 180
Query: 233 IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQL 292
+ RFD+IE +GAQK E+PPKP+DLCTICYTSGTTGNPKGVMLTH N++AA + +LQL
Sbjct: 181 LYRFDDIEHLGAQKNHPELPPKPSDLCTICYTSGTTGNPKGVMLTHQNIMAANCSVMLQL 240
Query: 293 SDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPA 352
DH D LISFLPLAHMLER CE+ ++++GG +G+YSGDIK L EDMK L+PTIMPA
Sbjct: 241 GDHGLTSKDTLISFLPLAHMLERCCENTVYMMGGCVGFYSGDIKKLPEDMKALRPTIMPA 300
Query: 353 VPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSKENEIKK 391
VPRLLNR+YDKV ++R SF+KR++FNM M +KE EIKK
Sbjct: 301 VPRLLNRIYDKVHTELRSSFLKRMIFNMGMRAKETEIKK 339
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242009014|ref|XP_002425288.1| Long-chain-fatty-acid--CoA ligase, putative [Pediculus humanus corporis] gi|212509053|gb|EEB12550.1| Long-chain-fatty-acid--CoA ligase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 222/386 (57%), Positives = 298/386 (77%), Gaps = 32/386 (8%)
Query: 8 PPAIRPPVDLNNQSEIIREQNLALVGTNETMRLRFYYQSDRSSNLRGRGREVVRVSKFFS 67
P A +P VDLN+Q+ ++ G E++RVSKF+
Sbjct: 32 PTAEKPLVDLNHQASVLP------------------------------GPEMIRVSKFYK 61
Query: 68 GASEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNF 127
+ +GKF+S L +D +TLYD FRKGAKESNNG CLGWR++ +PYQW++YN+A LRA+NF
Sbjct: 62 ESKDGKFVSYLSEDTRTLYDTFRKGAKESNNGPCLGWRESYYKPYQWLNYNEAWLRAKNF 121
Query: 128 GSGLLGLGVNPG--SFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQA 185
GSGL+ LG+NP +F+G+YS NCPEWI+ EQGAY YSM+IV LYDTLGPDACA+I+NQA
Sbjct: 122 GSGLVALGLNPSPETFLGLYSTNCPEWILAEQGAYTYSMVIVPLYDTLGPDACAYIVNQA 181
Query: 186 EISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQ 245
+ISV++ DD+K NQ++D+AP CL+K+I +++++ T++RA++R +EII+F+E+E +GA
Sbjct: 182 QISVIVCQDDAKVNQLLDKAPNCLRKLIVMKDIQPQTLKRAKTRGVEIIKFEEVEELGAN 241
Query: 246 KMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLIS 305
K EVPPK TDL TICYTSGTTGNPKGVMLTH N++A + A +LQL +HRP SD ++S
Sbjct: 242 KNHNEVPPKYTDLATICYTSGTTGNPKGVMLTHENIVAGVCAVILQLGEHRPTSSDCMMS 301
Query: 306 FLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM 365
FLPLAHMLER CE +F+ GG +GYY+GDIK L+EDMK LKPT+MPAVPRLLNR+YDKV+
Sbjct: 302 FLPLAHMLERCCEHGLFISGGCVGYYTGDIKRLSEDMKALKPTVMPAVPRLLNRIYDKVV 361
Query: 366 AQIRPSFIKRLMFNMAMGSKENEIKK 391
+Q+ SFIKR ++NMA+G+KE+E+K+
Sbjct: 362 SQVSGSFIKRTLYNMALGAKESELKR 387
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91088831|ref|XP_970461.1| PREDICTED: similar to CG3961 CG3961-PA [Tribolium castaneum] gi|270012333|gb|EFA08781.1| hypothetical protein TcasGA2_TC006471 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 216/338 (63%), Positives = 287/338 (84%), Gaps = 2/338 (0%)
Query: 56 GREVVRVSKFFSGASEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWI 115
G E++RVS+F+ A EGKF+S ++ D KTLY+ FR+GAKESNNG CLGWR++ +PYQW+
Sbjct: 90 GPELIRVSRFYKEAKEGKFVSYMFPDAKTLYETFRRGAKESNNGPCLGWRESYVKPYQWL 149
Query: 116 HYNQALLRARNFGSGLLGLGVNPGS--FVGIYSQNCPEWIITEQGAYCYSMIIVALYDTL 173
+YN+ALLRA+NFG+G++ G+ PG+ +GIYSQNCPEWIITEQ AYCYSM++V LYDTL
Sbjct: 150 NYNEALLRAKNFGAGMVAQGLTPGTNTIIGIYSQNCPEWIITEQAAYCYSMVLVPLYDTL 209
Query: 174 GPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEI 233
GPDACAFII QAEI+V++ +DD KCN ++DR+PRCL+K+I ++VR AT QRA++R +EI
Sbjct: 210 GPDACAFIIKQAEITVVVCEDDQKCNLLLDRSPRCLRKLIVYKDVRPATKQRAKNRGVEI 269
Query: 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLS 293
++F ++E +G++ EVPPKP+DLCTICYTSGTTGNPKGVMLTH NV+A++SA L+Q+
Sbjct: 270 VKFHDVEVLGSKSNHPEVPPKPSDLCTICYTSGTTGNPKGVMLTHENVVASMSAVLMQMG 329
Query: 294 DHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAV 353
DH+ K SDVLISFLPLAHMLER CE+AM+++G S+G++ GDI+ L++DMK LKPT+ PAV
Sbjct: 330 DHKVKSSDVLISFLPLAHMLERCCENAMYMMGASVGFFLGDIRRLSDDMKALKPTVSPAV 389
Query: 354 PRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSKENEIKK 391
PRLLNR+YDKV A+I S IK+++FNM M +KE+EIK+
Sbjct: 390 PRLLNRIYDKVQAEINGSCIKKMLFNMGMSAKESEIKR 427
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332026916|gb|EGI67017.1| Long-chain-fatty-acid--CoA ligase 1 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 211/332 (63%), Positives = 278/332 (83%), Gaps = 5/332 (1%)
Query: 62 VSKFFSGASEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQAL 121
+SKF EGKF++ LY+DV+TLY+ FR+GAKESNNG CLGWR ++PYQW+HYN+ L
Sbjct: 1 MSKF---CKEGKFVTFLYEDVRTLYEGFRRGAKESNNGPCLGWRDGPNKPYQWLHYNETL 57
Query: 122 LRARNFGSGLLGLGVNPG--SFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACA 179
LRA+NFGSGL+ LG+ PG + VG+YSQNCPEWI+TEQ Y YS+++V LYDTLGPDACA
Sbjct: 58 LRAKNFGSGLVSLGLTPGQQTLVGLYSQNCPEWILTEQACYSYSLVVVPLYDTLGPDACA 117
Query: 180 FIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEI 239
FIINQA+I++++ +DD KCN ++D+APRCL+K++ ++E R AT QRA++R IE+ +FD+I
Sbjct: 118 FIINQADINLVVCEDDQKCNLLLDKAPRCLRKLVVVKETRPATNQRAKNRGIELYKFDDI 177
Query: 240 ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKY 299
ER+GAQ+ E+PP P+DLCTICYTSGTTGNPKGVMLTH NV A+ A ++Q+ DH
Sbjct: 178 ERLGAQRNHPELPPNPSDLCTICYTSGTTGNPKGVMLTHQNVTASNCAVIMQMGDHGITS 237
Query: 300 SDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNR 359
D++ISFLPLAHMLER CE++M+++GGS+G+YSGDIK L EDMK L+PT+MPAVPRLLNR
Sbjct: 238 KDIMISFLPLAHMLERCCENSMYMMGGSVGFYSGDIKKLPEDMKALRPTVMPAVPRLLNR 297
Query: 360 MYDKVMAQIRPSFIKRLMFNMAMGSKENEIKK 391
+YDKV A+++ SF+KR++FNM M +KE E+KK
Sbjct: 298 VYDKVQAELQNSFLKRMIFNMGMRAKETEVKK 329
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 391 | ||||||
| FB|FBgn0036821 | 704 | CG3961 [Drosophila melanogaste | 0.859 | 0.477 | 0.574 | 3.4e-109 | |
| UNIPROTKB|F1NNV2 | 683 | ACSL5 "Uncharacterized protein | 0.818 | 0.468 | 0.452 | 1.2e-77 | |
| UNIPROTKB|F1P2G8 | 706 | ACSL6 "Uncharacterized protein | 0.859 | 0.475 | 0.436 | 1.6e-75 | |
| ZFIN|ZDB-GENE-040912-169 | 681 | acsl5 "acyl-CoA synthetase lon | 0.805 | 0.462 | 0.447 | 9.7e-74 | |
| UNIPROTKB|Q2TA22 | 697 | ACSL6 "Uncharacterized protein | 0.792 | 0.444 | 0.454 | 2.5e-73 | |
| MGI|MGI:894291 | 697 | Acsl6 "acyl-CoA synthetase lon | 0.808 | 0.453 | 0.443 | 5.3e-73 | |
| UNIPROTKB|F1PTR5 | 722 | ACSL6 "Uncharacterized protein | 0.808 | 0.437 | 0.443 | 1.4e-72 | |
| UNIPROTKB|J9P2B0 | 697 | ACSL6 "Uncharacterized protein | 0.808 | 0.453 | 0.443 | 1.4e-72 | |
| UNIPROTKB|D4A6Q0 | 699 | Acsl6 "Long-chain-fatty-acid-- | 0.808 | 0.452 | 0.44 | 7.6e-72 | |
| UNIPROTKB|E9PSJ2 | 694 | Acsl6 "Long-chain-fatty-acid-- | 0.808 | 0.455 | 0.44 | 7.6e-72 |
| FB|FBgn0036821 CG3961 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
Identities = 193/336 (57%), Positives = 253/336 (75%)
Query: 56 GREVVRVSKFFSGASEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWI 115
G E + VSKF+ + GKF+S + ++V+TLY FR+GA SNNG CLGWR+ ++ PYQWI
Sbjct: 75 GPEQIHVSKFYKESKNGKFVSYITENVRTLYQTFREGAYASNNGPCLGWRETLTSPYQWI 134
Query: 116 HYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGP 175
+Y++ALLRA+NFG+G+L LG P +GIYSQN PEWI+ EQG Y +S+++V LYDTLGP
Sbjct: 135 NYDEALLRAKNFGAGMLALGARPKQLIGIYSQNRPEWILYEQGCYSFSLVVVPLYDTLGP 194
Query: 176 DACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIR 235
DACAFII Q ++ V+IV+DD K ++++APR LK I++I+ +R T++RARSR I+I
Sbjct: 195 DACAFIIRQTDMQVVIVEDDGKAAMLLEKAPRSLKIIVAIKPIRQTTLERARSRGIQIFS 254
Query: 236 FDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDH 295
F ++E++GA+ EVPP DLCT+CYTSGTTGNPKGVMLTHGNV DH
Sbjct: 255 FIDVEKLGAKGNHPEVPPTAEDLCTVCYTSGTTGNPKGVMLTHGNVVAGVCSVILQMGDH 314
Query: 296 RPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPR 355
R + DV++SFLPLAHM ER CE+ M+ VGG +G+YSGDIK LT D+K LKPT+MPAVPR
Sbjct: 315 RIRAGDVMVSFLPLAHMFERCCENGMYYVGGCVGFYSGDIKELTNDLKMLKPTVMPAVPR 374
Query: 356 LLNRMYDKVMAQIRPSFIKRLMFNMAMGSKENEIKK 391
LLNR+YDK+ I S +KR +FNMAM +KE EI +
Sbjct: 375 LLNRVYDKIQNDISASGLKRGLFNMAMRAKEKEIAR 410
|
|
| UNIPROTKB|F1NNV2 ACSL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 747 (268.0 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 149/329 (45%), Positives = 203/329 (61%)
Query: 70 SEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGS 129
++ +S ++D KTLY+AF++G S NG CLG+R+ ++PYQW+ Y Q L RA++ GS
Sbjct: 62 TDNNLVSYYFEDSKTLYEAFQRGLHASGNGNCLGYRKP-NQPYQWLTYKQVLDRAQHLGS 120
Query: 130 GLLGLGVNPGS--FVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEI 187
GLL G P S F+GI++QN PEWII+E Y YSM+ V LYDTLGPDA +I+N+A+I
Sbjct: 121 GLLQKGCKPSSDQFIGIFAQNRPEWIISEYACYTYSMVAVPLYDTLGPDAILYIVNKADI 180
Query: 188 SVLIVDDDSKCNQIIDRAPR----CLKKIISIREVRMATMQRARSRAIEIIRFDEIERVG 243
++I D K +++ + CLK II + R +EI+ E E +G
Sbjct: 181 GIVICDKPEKAQILLENCEQGKTPCLKTIILMDLFDKELKDRGAKVGVEILALQEAEELG 240
Query: 244 AQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDH-RPKYSDV 302
+ + VPP P DLC +C+TSGTTGNPKG MLTH NV D SDV
Sbjct: 241 RNNIRKPVPPGPEDLCIVCFTSGTTGNPKGAMLTHENVVANAAAFLRTIEDTVECTTSDV 300
Query: 303 LISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYD 362
IS+LPLAHM ER ++ M+ G +G++ GDIK LT+DMKTLKPTI P VPRLLNR+YD
Sbjct: 301 SISYLPLAHMFERVVQTVMYSCGAKVGFFQGDIKLLTDDMKTLKPTIFPVVPRLLNRIYD 360
Query: 363 KVMAQIRPSFIKRLMFNMAMGSKENEIKK 391
K+ + +K+ + N A K E+K+
Sbjct: 361 KIQSGANTP-MKKFLLNFAATMKMIEVKQ 388
|
|
| UNIPROTKB|F1P2G8 ACSL6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
Identities = 154/353 (43%), Positives = 206/353 (58%)
Query: 45 QSDRSSNLRGRGREVVRVSKFFSGASEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGW 104
QS+ L G R V+ G S + L+ YDD +T+Y+ FR+G S NG CLG+
Sbjct: 68 QSEEVEGLDGARRSVI-------GDSP-QLLTHYYDDARTMYEVFRRGFSISENGPCLGY 119
Query: 105 RQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGS--FVGIYSQNCPEWIITEQGAYCY 162
R+ +PYQW+ Y + RA GSGLL G P + F+G+++QN PEWII+E Y Y
Sbjct: 120 RKP-KQPYQWLSYKEVAERAEALGSGLLQQGCKPCTEQFIGVFAQNRPEWIISELACYTY 178
Query: 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRC----LKKIISIREV 218
SM++V LYDTLGP A +I+N A+IS +I D K ++D R L II +
Sbjct: 179 SMVVVPLYDTLGPGAIRYIVNTADISTVICDKPDKARTLLDHVERRETPGLSSIILMDPF 238
Query: 219 RMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTH 278
+R R + I E+E G + VPP+P DL +C+TSGTTGNPKG MLTH
Sbjct: 239 EKELTERGRRCGVRIQSMQEVEDCGRENRRAPVPPRPEDLSIVCFTSGTTGNPKGAMLTH 298
Query: 279 GNVXXXXXXXXXXXXDHR-PKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKN 337
GNV P+ DVLISFLPLAHM ER +S ++ GG IG++ GDI+
Sbjct: 299 GNVVADFSGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRIGFFQGDIRL 358
Query: 338 LTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSKENEIK 390
L++DMK L+PTI P VPRLLNRMYDK+ +Q S +KR + A K+ E++
Sbjct: 359 LSDDMKALRPTIFPVVPRLLNRMYDKIFSQADTS-LKRWVLEFAARRKKAEVR 410
|
|
| ZFIN|ZDB-GENE-040912-169 acsl5 "acyl-CoA synthetase long-chain family member 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 719 (258.2 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
Identities = 145/324 (44%), Positives = 199/324 (61%)
Query: 75 LSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGL 134
+S +Y+D KTLY+ F++G + S NG CLG+R+ +PYQW+ Y Q RA GSGL+
Sbjct: 67 ISYMYEDGKTLYEVFQRGLRVSGNGPCLGFRKK-GQPYQWLKYKQVSDRAEFLGSGLIHR 125
Query: 135 GVNPG--SFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIV 192
G P +F+GI++QN PEWII E Y YSM+ V LYDTLGP+A FIIN+A IS +I
Sbjct: 126 GQKPSQDTFIGIFAQNRPEWIIAELACYTYSMVAVPLYDTLGPEALVFIINRANISTVIC 185
Query: 193 DDDSKCNQIIDRAPR----CLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMF 248
D K ++D + + LK II + A +R ++++ ++E +G
Sbjct: 186 DKKDKAETLLDNSEKKLTPLLKTIILMDSYDSALTERGSKIGVDVLSLKDVEALGKNNHH 245
Query: 249 EEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXD-HRPKYSDVLISFL 307
VPPKP DL IC+TSGTTG+PKG MLTH NV P SDV ISFL
Sbjct: 246 RPVPPKPEDLSIICFTSGTTGDPKGAMLTHENVVADAAGVVRTFESVFVPVPSDVSISFL 305
Query: 308 PLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQ 367
PLAHM ER ++ ++ VGG +G++ GDI+ L +DMK L+PT+ P VPRLLNR+YDKV +
Sbjct: 306 PLAHMFERVVQTVLYGVGGRVGFFQGDIRLLPDDMKALQPTVFPVVPRLLNRVYDKVQSG 365
Query: 368 IRPSFIKRLMFNMAMGSKENEIKK 391
+ F K+ + N A+ K E+K+
Sbjct: 366 AKTPF-KKWLLNFAIEKKCAEVKQ 388
|
|
| UNIPROTKB|Q2TA22 ACSL6 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
Identities = 145/319 (45%), Positives = 192/319 (60%)
Query: 79 YDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNP 138
YDD +T+Y+ F +G + S NG CLG+R N +PYQW+ Y + RA GSGLL P
Sbjct: 86 YDDARTMYEVFHRGLRISGNGPCLGFR-NPKQPYQWLSYQEVADRAEFLGSGLLQHNCKP 144
Query: 139 --GSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDS 196
F+G+++QN PEWII E Y YSM++V LYDTLGP A +IIN A+IS +IVD
Sbjct: 145 CTDQFIGVFAQNRPEWIIAELACYTYSMVVVPLYDTLGPGAVRYIINTADISTVIVDKPQ 204
Query: 197 KCNQIIDRAPRC----LKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVP 252
K +++ R LK II + A R + + I ++E G Q + VP
Sbjct: 205 KAVVLLEHVERKETPGLKLIILMEPFEEALKDRGQECGVVIKSMQDVEDCGQQNHCDPVP 264
Query: 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHR-PKYSDVLISFLPLAH 311
PKP+DL +C+TSGTTGNPKG MLTHGNV P+ DVLISFLPLAH
Sbjct: 265 PKPSDLSIVCFTSGTTGNPKGAMLTHGNVVADFSGFLKVTEKVIFPRQDDVLISFLPLAH 324
Query: 312 MLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPS 371
M ER +S ++ GG +G++ GDI+ L++DMK L PTI P VPRLLNRMYDK+ +Q
Sbjct: 325 MFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKALHPTIFPVVPRLLNRMYDKIFSQADTP 384
Query: 372 FIKRLMFNMAMGSKENEIK 390
+KR + A K+ E++
Sbjct: 385 -LKRWLLEFAAKRKQAEVR 402
|
|
| MGI|MGI:894291 Acsl6 "acyl-CoA synthetase long-chain family member 6" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 144/325 (44%), Positives = 195/325 (60%)
Query: 73 KFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLL 132
+ L+ YDD +T+Y FR+G S NG CLG+R+ +PYQW+ Y + RA GSGLL
Sbjct: 80 QLLTHYYDDARTMYQVFRRGLSISGNGPCLGFRKP-EQPYQWLSYQEVAKRAEFLGSGLL 138
Query: 133 GLGVNPGS--FVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVL 190
G+ FVG+++QN PEWII E Y YSM++V LYDTLGP + ++IIN A+I +
Sbjct: 139 QHDCKVGTEQFVGVFAQNRPEWIIAELACYTYSMVVVPLYDTLGPGSISYIINTADICTV 198
Query: 191 IVDDDSKCNQIIDRAPRC----LKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQK 246
IVD K +++ R LK +I + A +R + ++I IE G +
Sbjct: 199 IVDKPHKATLLLEHVERKETPGLKLVILMEPFEDALRERGKKCGVDIKSMQAIEDCGREN 258
Query: 247 MFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHR-PKYSDVLIS 305
VPP+P DL +C+TSGTTGNPKG MLTHGNV P+ DVLIS
Sbjct: 259 HHAPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADFSGFLKVTEKVIFPRQDDVLIS 318
Query: 306 FLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM 365
FLPLAHM ER +S ++ GG +G++ GDI+ L++DMK L+PTI P VPRLLNRMYDK+
Sbjct: 319 FLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKALRPTIFPVVPRLLNRMYDKIF 378
Query: 366 AQIRPSFIKRLMFNMAMGSKENEIK 390
Q S +KR + A K+ E++
Sbjct: 379 HQADTS-LKRWLLEFAAKRKQAEVR 402
|
|
| UNIPROTKB|F1PTR5 ACSL6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 144/325 (44%), Positives = 194/325 (59%)
Query: 73 KFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLL 132
+ L+ YDD +T+Y FR+G S NG CLG+R+ +PYQW+ Y + RA GSGLL
Sbjct: 105 QLLTHYYDDARTMYQVFRRGLSISGNGPCLGFRKP-KQPYQWLSYQEVADRAEFLGSGLL 163
Query: 133 GLGVNP--GSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVL 190
P F+G+++QN PEWII E Y YSM++V LYDTLGP A +II+ A+IS +
Sbjct: 164 QHNCKPCTDQFIGVFAQNRPEWIIAELACYTYSMVVVPLYDTLGPGAIRYIISTADISTV 223
Query: 191 IVDDDSKCNQIIDRAPRC----LKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQK 246
+VD K +++ R LK II + A +R + + I +E G Q
Sbjct: 224 VVDKPQKAVLLLEHVERKETPGLKLIIIMEPFEEALKERGQECGVIIKSMQAVEECGQQN 283
Query: 247 MFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHR-PKYSDVLIS 305
VPPKP+DL +C+TSGTTGNPKG MLTHGNV P+ DVLIS
Sbjct: 284 HHAPVPPKPSDLSIVCFTSGTTGNPKGAMLTHGNVVADFSGFLKVTEKVIFPRQDDVLIS 343
Query: 306 FLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM 365
FLPLAHM ER +S ++ GG +G++ GDI+ L++DMK L PTI P VPRLLNRMYDK+
Sbjct: 344 FLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKALCPTIFPVVPRLLNRMYDKIF 403
Query: 366 AQIRPSFIKRLMFNMAMGSKENEIK 390
+Q + +KR + A K+ E++
Sbjct: 404 SQA-DTRLKRWLLEFAAKRKQAEVR 427
|
|
| UNIPROTKB|J9P2B0 ACSL6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 144/325 (44%), Positives = 194/325 (59%)
Query: 73 KFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLL 132
+ L+ YDD +T+Y FR+G S NG CLG+R+ +PYQW+ Y + RA GSGLL
Sbjct: 80 QLLTHYYDDARTMYQVFRRGLSISGNGPCLGFRKP-KQPYQWLSYQEVADRAEFLGSGLL 138
Query: 133 GLGVNP--GSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVL 190
P F+G+++QN PEWII E Y YSM++V LYDTLGP A +II+ A+IS +
Sbjct: 139 QHNCKPCTDQFIGVFAQNRPEWIIAELACYTYSMVVVPLYDTLGPGAIRYIISTADISTV 198
Query: 191 IVDDDSKCNQIIDRAPRC----LKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQK 246
+VD K +++ R LK II + A +R + + I +E G Q
Sbjct: 199 VVDKPQKAVLLLEHVERKETPGLKLIIIMEPFEEALKERGQECGVIIKSMQAVEECGQQN 258
Query: 247 MFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHR-PKYSDVLIS 305
VPPKP+DL +C+TSGTTGNPKG MLTHGNV P+ DVLIS
Sbjct: 259 HHAPVPPKPSDLSIVCFTSGTTGNPKGAMLTHGNVVADFSGFLKVTEKVIFPRQDDVLIS 318
Query: 306 FLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM 365
FLPLAHM ER +S ++ GG +G++ GDI+ L++DMK L PTI P VPRLLNRMYDK+
Sbjct: 319 FLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKALCPTIFPVVPRLLNRMYDKIF 378
Query: 366 AQIRPSFIKRLMFNMAMGSKENEIK 390
+Q + +KR + A K+ E++
Sbjct: 379 SQA-DTRLKRWLLEFAAKRKQAEVR 402
|
|
| UNIPROTKB|D4A6Q0 Acsl6 "Long-chain-fatty-acid--CoA ligase 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 695 (249.7 bits), Expect = 7.6e-72, Sum P(2) = 7.6e-72
Identities = 143/325 (44%), Positives = 194/325 (59%)
Query: 73 KFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLL 132
+ L+ YDD +T+Y FR+G S NG CLG+R+ +PYQW+ Y + RA GSGLL
Sbjct: 80 QLLTHYYDDARTMYQVFRRGLSISGNGPCLGFRKP-EQPYQWLSYQEVAKRAEFLGSGLL 138
Query: 133 GLGVNPGS--FVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVL 190
G+ F+G+++QN PEWII E Y YSM++V LYDTLGP + +IIN A+I +
Sbjct: 139 QHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPLYDTLGPGSIRYIINTADICTV 198
Query: 191 IVDDDSKCNQIIDRAPRC----LKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQK 246
IVD K +++ R LK +I + A +R + ++I IE G +
Sbjct: 199 IVDKPHKAILLLEHVERKETPGLKLVILMEPFDDALRERGKKCGVDIKSMQAIEDSGQEN 258
Query: 247 MFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHR-PKYSDVLIS 305
VPP+P DL +C+TSGTTGNPKG MLTHGNV P+ DVLIS
Sbjct: 259 HRVPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADFSGFLKVTEKVIFPRQDDVLIS 318
Query: 306 FLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM 365
FLPLAHM ER +S ++ GG +G++ GDI+ L++DMK L+PTI P VPRLLNRMYDK+
Sbjct: 319 FLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKALRPTIFPVVPRLLNRMYDKIF 378
Query: 366 AQIRPSFIKRLMFNMAMGSKENEIK 390
Q S +KR + A K+ E++
Sbjct: 379 HQADTS-LKRWLLEFAAKRKQAEVR 402
|
|
| UNIPROTKB|E9PSJ2 Acsl6 "Long-chain-fatty-acid--CoA ligase 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 695 (249.7 bits), Expect = 7.6e-72, Sum P(2) = 7.6e-72
Identities = 143/325 (44%), Positives = 194/325 (59%)
Query: 73 KFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLL 132
+ L+ YDD +T+Y FR+G S NG CLG+R+ +PYQW+ Y + RA GSGLL
Sbjct: 80 QLLTHYYDDARTMYQVFRRGLSISGNGPCLGFRKP-EQPYQWLSYQEVAKRAEFLGSGLL 138
Query: 133 GLGVNPGS--FVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVL 190
G+ F+G+++QN PEWII E Y YSM++V LYDTLGP + +IIN A+I +
Sbjct: 139 QHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPLYDTLGPGSIRYIINTADICTV 198
Query: 191 IVDDDSKCNQIIDRAPRC----LKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQK 246
IVD K +++ R LK +I + A +R + ++I IE G +
Sbjct: 199 IVDKPHKAILLLEHVERKETPGLKLVILMEPFDDALRERGKKCGVDIKSMQAIEDSGQEN 258
Query: 247 MFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVXXXXXXXXXXXXDHR-PKYSDVLIS 305
VPP+P DL +C+TSGTTGNPKG MLTHGNV P+ DVLIS
Sbjct: 259 HRVPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADFSGFLKVTEKVIFPRQDDVLIS 318
Query: 306 FLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM 365
FLPLAHM ER +S ++ GG +G++ GDI+ L++DMK L+PTI P VPRLLNRMYDK+
Sbjct: 319 FLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKALRPTIFPVVPRLLNRMYDKIF 378
Query: 366 AQIRPSFIKRLMFNMAMGSKENEIK 390
Q S +KR + A K+ E++
Sbjct: 379 HQADTS-LKRWLLEFAAKRKQAEVR 402
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.2.1.3 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 391 | |||
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 1e-120 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 3e-83 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 4e-73 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 7e-71 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 1e-68 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-61 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 5e-61 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 8e-58 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 9e-51 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 2e-40 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 5e-39 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 5e-35 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 6e-35 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 1e-24 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-24 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 4e-23 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 1e-22 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 4e-19 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 9e-19 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 1e-18 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 3e-18 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 2e-17 | |
| PTZ00297 | 1452 | PTZ00297, PTZ00297, pantothenate kinase; Provision | 1e-16 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 3e-16 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 5e-16 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 9e-16 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 1e-15 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 3e-15 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 6e-15 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 3e-14 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 3e-14 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 9e-14 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 1e-13 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 2e-13 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 3e-13 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 3e-13 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 4e-13 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 4e-13 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 6e-13 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 9e-13 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 1e-12 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 5e-12 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 7e-12 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 1e-11 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-11 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 1e-11 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 2e-11 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 4e-11 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 5e-11 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 5e-11 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 1e-10 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 1e-10 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 1e-10 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 2e-10 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 3e-10 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 3e-10 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 4e-10 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 5e-10 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 6e-10 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 8e-10 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 1e-09 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 1e-09 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 2e-09 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 3e-09 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 3e-09 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 3e-09 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 3e-09 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 8e-09 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 9e-09 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 1e-08 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 1e-08 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 2e-08 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 2e-08 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 3e-08 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 4e-08 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 4e-08 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 5e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 7e-08 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 7e-08 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 8e-08 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 1e-07 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 2e-07 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 2e-07 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 3e-07 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 4e-07 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 5e-07 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 6e-07 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 8e-07 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 9e-07 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 1e-06 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 1e-06 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 2e-06 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 3e-06 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 3e-06 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 4e-06 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 4e-06 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 6e-06 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 8e-06 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 8e-06 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 8e-06 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 9e-06 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 9e-06 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 1e-05 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 1e-05 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 1e-05 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 1e-05 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 2e-05 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 2e-05 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 2e-05 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 3e-05 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 3e-05 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 3e-05 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 4e-05 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 5e-05 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 6e-05 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 8e-05 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 9e-05 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 9e-05 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 9e-05 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 9e-05 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-04 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 1e-04 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 1e-04 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 1e-04 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 1e-04 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 1e-04 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 2e-04 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 5e-04 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 6e-04 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 7e-04 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 8e-04 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 8e-04 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 0.001 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 0.001 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 0.001 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 0.001 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 0.002 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 0.002 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 0.002 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 0.002 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 0.003 | |
| PRK12476 | 612 | PRK12476, PRK12476, putative fatty-acid--CoA ligas | 0.003 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 0.003 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 0.004 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 358 bits (920), Expect = e-120
Identities = 116/282 (41%), Positives = 165/282 (58%), Gaps = 38/282 (13%)
Query: 111 PYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALY 170
PY+WI Y + RA N GSGL LG+ PG +GI+++N PEWIITEQ + S++IV LY
Sbjct: 2 PYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLY 61
Query: 171 DTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRA 230
DTLG +A +I+N+ EIS++ D A
Sbjct: 62 DTLGEEAIEYILNETEISIVFCD------------------------------------A 85
Query: 231 IEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALL 290
+++ F+E+E +G + PPKP DL TI YTSGTTGNPKGVMLTHGN++A ++
Sbjct: 86 VKVYSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINK 145
Query: 291 QLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIM 350
+ + +DV IS+LPLAH+ ER E+ +GG IGYYSGD + L D+K LKPT+
Sbjct: 146 IVPEFIGP-TDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKELKPTVF 204
Query: 351 PAVPRLLNRMYDKVMAQI-RPSFIKRLMFNMAMGSKENEIKK 391
VPR+L+R+Y ++A++ +KR +FN A K +++
Sbjct: 205 VGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRR 246
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 266 bits (682), Expect = 3e-83
Identities = 117/325 (36%), Positives = 177/325 (54%), Gaps = 22/325 (6%)
Query: 79 YDDVKTLYDAFRKGAKESNNGRCLGWR---QNISRPYQWIHYNQALLRARNFGSGLLGLG 135
+ ++ TL+D F + + + LG R Y+W+ Y +A GSGL+ G
Sbjct: 40 HPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHG 99
Query: 136 VNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDD 195
+ G+ VG+Y N PEW+I + YS + V LYDTLGPDA FI+N AE++ +
Sbjct: 100 IPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQ 159
Query: 196 SKCNQIIDRAPRCLKKIISIR--------EVRMATMQRARSRAIEIIRFDEIERVGAQKM 247
N ++ CL +I S+R + + ++ +EI+ + ++ G
Sbjct: 160 -TLNTLLS----CLSEIPSVRLIVVVGGADEPLPSL--PSGTGVEIVTYSKLLAQGRSSP 212
Query: 248 FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFL 307
PPKP D+ TICYTSGTTG PKGV+LTHGN+IA ++ + L P SDV IS+L
Sbjct: 213 QPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLST-KFYP--SDVHISYL 269
Query: 308 PLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQ 367
PLAH+ ER + M G ++G+Y GD L +D+ L+PTI +VPRL NR+YD +
Sbjct: 270 PLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNA 329
Query: 368 IRPS-FIKRLMFNMAMGSKENEIKK 391
++ S +K +FN A +K+ ++
Sbjct: 330 VKESGGLKERLFNAAYNAKKQALEN 354
|
Length = 651 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 240 bits (613), Expect = 4e-73
Identities = 117/312 (37%), Positives = 172/312 (55%), Gaps = 18/312 (5%)
Query: 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISR---PYQWIHYNQALLRARNFGSGLLGLGVN 137
D+ T +D F K ++ + + LGWR+ + PY W Y + GS L G
Sbjct: 40 DITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAE 99
Query: 138 PGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK 197
PGS VGIY NCP+WI+ + +S+I V LYDTLGP A +I++ AEI + V D K
Sbjct: 100 PGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFV-QDKK 158
Query: 198 CNQIIDRAPRC-----LKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVP 252
++++ P C LK I+S V +A ++ + + +G + E P
Sbjct: 159 IKELLE--PDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNP 216
Query: 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYS--DVLISFLPLA 310
PKP D+CTI YTSGT+G+PKGV+LTH V + L + K + DV +SFLPLA
Sbjct: 217 PKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLA 276
Query: 311 HMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYD---KVMAQ 367
H+L+R E F G S+GYY GD+ L +D+ LKPT++ VPR+ R+++ K + +
Sbjct: 277 HILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQE 336
Query: 368 IRPSFIKRLMFN 379
+ P +RL+FN
Sbjct: 337 LNP--RRRLIFN 346
|
Length = 660 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 232 bits (595), Expect = 7e-71
Identities = 95/296 (32%), Positives = 146/296 (49%), Gaps = 13/296 (4%)
Query: 104 WRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYS 163
++ I Y + R R SGLL LG+ G V I++ N PEW I +
Sbjct: 35 LMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALG 94
Query: 164 MIIVALYDTLGPDACAFIINQAEISVLIVDDD---SKCNQIIDRAPRCLKKIISIREVRM 220
+ V +Y T P+ A+I+N++E V+ V++ +++ P+ + I+ I VR
Sbjct: 95 AVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVRE 154
Query: 221 AT----MQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVML 276
A + I F A PPKP DL TI YTSGTTG PKGVML
Sbjct: 155 AVEAKALVLEVFPDEGISLFLI---DSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVML 211
Query: 277 THGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIK 336
TH N++A ++ L P D ++SFLPLAH+ ER E + L GG + D +
Sbjct: 212 THRNLLAQVAGIDEVLPPIGPG--DRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPR 269
Query: 337 NLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPS-FIKRLMFNMAMGSKENEIKK 391
L ED+K ++PT+M VPR+ ++Y +M ++ + ++R +F A+ +I +
Sbjct: 270 TLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISR 325
|
Length = 613 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 228 bits (582), Expect = 1e-68
Identities = 122/327 (37%), Positives = 179/327 (54%), Gaps = 13/327 (3%)
Query: 75 LSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISR---PYQWIHYNQALLRARNFGSGL 131
L L D+ + + F K+ N + LG RQ PY W+ Y + A GS +
Sbjct: 35 LLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAI 94
Query: 132 LGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLI 191
GVNPG GIY NCPEWII + + V LYDTLG +A FIIN AE+S+
Sbjct: 95 RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAF 154
Query: 192 VDDDSKCNQIIDRAPRC---LKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMF 248
V +SK + I+ P+C LK I+S +V + A + ++E +G+
Sbjct: 155 V-QESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLDC- 212
Query: 249 EEVPPK-PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAA--LLQLSDHRPKYSDVLIS 305
E+PPK TD+CTI YTSGTTG PKGV+LT+ +IA + + LL+++D D S
Sbjct: 213 -ELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFS 271
Query: 306 FLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM 365
+LPLAH+ ++ E+ G SIG++ GDI+ L ED++ LKPTI VPR+ +R+Y +M
Sbjct: 272 YLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIM 331
Query: 366 AQIRPS-FIKRLMFNMAMGSKENEIKK 391
+I +++ +F+ A K ++K
Sbjct: 332 QKISSGGMLRKKLFDFAYNYKLGNLRK 358
|
Length = 660 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 1e-61
Identities = 82/274 (29%), Positives = 126/274 (45%), Gaps = 63/274 (22%)
Query: 111 PYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALY 170
+Q I + + R R +GL+ LGV PG V I ++N PEW+I + + V +Y
Sbjct: 2 IWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIY 61
Query: 171 DTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRA 230
T P+ A+I+ +DS +
Sbjct: 62 PTSSPEEVAYIL-----------NDSGARVVF---------------------------- 82
Query: 231 IEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALL 290
V KP DL T+ YTSGTTGNPKGVMLTH N++A AALL
Sbjct: 83 --------------------VEDKPDDLATLIYTSGTTGNPKGVMLTHRNLLAQA-AALL 121
Query: 291 QLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIM 350
++ P D ++SFLPLAH+ E+ + L G+ ++ + L ED++ ++PT+
Sbjct: 122 EVIPLSPG--DRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAESPETLLEDLREVRPTVF 179
Query: 351 PAVPRLLNRMYDKVMAQIR-PSFIKRLMFNMAMG 383
AVPR+ ++Y + A++ +KR +F A+G
Sbjct: 180 FAVPRVWEKIYAGIEAKVAAAGPLKRKLFRWALG 213
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 5e-61
Identities = 106/321 (33%), Positives = 176/321 (54%), Gaps = 10/321 (3%)
Query: 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNIS-RP--YQWIHYNQALLRARNFGSGLLGLGV 136
+ + + +D FR ++ N LG R+ + +P Y W Y + G+ L +GV
Sbjct: 42 EGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGV 101
Query: 137 NPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDS 196
+ GIY N PEWII+ + + + V LYDTLG A FII+ +E+S++ V++
Sbjct: 102 KDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEE-K 160
Query: 197 KCNQIIDRAP---RCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPP 253
K +++ P +K ++S V + A + + I +DE ++G K ++
Sbjct: 161 KISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIK 220
Query: 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYS--DVLISFLPLAH 311
K +D+CTI YTSGTTG+PKGVM+++ +++ I+ + L + DV +S+LPLAH
Sbjct: 221 KKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAH 280
Query: 312 MLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRP- 370
+ +R E G +IG++ GD+K L ED+ LKPTI AVPR+L+R+Y + ++
Sbjct: 281 IFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDG 340
Query: 371 SFIKRLMFNMAMGSKENEIKK 391
F+K+ +F+ A K +KK
Sbjct: 341 GFLKKFVFDSAFSYKFGNMKK 361
|
Length = 666 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 8e-58
Identities = 108/335 (32%), Positives = 166/335 (49%), Gaps = 56/335 (16%)
Query: 75 LSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISR-----------------PYQWIHY 117
+ T ++ TL F + K+ ++ R LG R+ ISR Y+WI Y
Sbjct: 50 VETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITY 109
Query: 118 NQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDA 177
Q R NF SGL+ LG N V I++ EW+I QG + ++ +V +Y +LG +A
Sbjct: 110 GQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEA 169
Query: 178 CAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQR------------ 225
+N+ E++ +I D LKK+I I ++ T++R
Sbjct: 170 LCHSLNETEVTTVICDSKQ------------LKKLIDISS-QLETVKRVIYMDDEGVDSD 216
Query: 226 ---ARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI 282
+ S + F E+E++G + + P P D+ I YTSG+TG PKGVM+THGN++
Sbjct: 217 SSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIV 276
Query: 283 AAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGY--------YSGD 334
A ++ + + DV +++LPLAH+LE ES M VG +IGY S
Sbjct: 277 ATVAGVMTVVPKLGKN--DVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNK 334
Query: 335 IKNLTE-DMKTLKPTIMPAVPRLLNRMYDKVMAQI 368
IK T+ D LKPT+M AVP +L+R+ D V ++
Sbjct: 335 IKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKV 369
|
Length = 696 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 9e-51
Identities = 68/266 (25%), Positives = 102/266 (38%), Gaps = 17/266 (6%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + RA + L LGV PG V I N PEW++ V L +L +
Sbjct: 2 YRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPAE 61
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
A+I+ +E VLI DD+ + + + I +
Sbjct: 62 RLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVG----------DDGEGLDLL 111
Query: 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHR 296
D+ GA P P DL I YTSGTTG PKGVMLTH N++A + +
Sbjct: 112 DDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTP 171
Query: 297 PKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG---DIKNLTEDMKTLKPTIMPAV 353
D ++ LPL L GG++ D L + ++ K T++ V
Sbjct: 172 G---DRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGV 228
Query: 354 PRLLNRMYDKVMAQIRP-SFIKRLMF 378
P LL + + S ++ ++
Sbjct: 229 PTLLRLLLKAPEEKKYDLSSLRLVLS 254
|
Length = 412 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 2e-40
Identities = 75/271 (27%), Positives = 127/271 (46%), Gaps = 23/271 (8%)
Query: 110 RPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVAL 169
Y W Q +AR + L LG+ PG + I S+NC EWII + + + V L
Sbjct: 5 HEYTW---AQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPL 61
Query: 170 YDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSR 229
Y TL + +++ ++ L V K + + + +I +T++
Sbjct: 62 YPTLTAETIRYVLEHSDAKALFVG---KLDDWDAMKAGVPEGLPTIILFPYSTLKDHYK- 117
Query: 230 AIEIIRFDEIERVGAQKMFEEVP-PKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAA 288
+D++ + A + + P P+P DL TI YTSGTTG PKGVML+ G A
Sbjct: 118 ------WDDL--LAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGT 169
Query: 289 --LLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLK 346
++ L+ + D L+S+LPLAH+ ER L G+ ++ + D++ +
Sbjct: 170 IEIIGLTPN-----DRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESLDTFAADLQRAR 224
Query: 347 PTIMPAVPRLLNRMYDKVMAQIRPSFIKRLM 377
PT+ +VPRL + ++A++ P + L+
Sbjct: 225 PTVFFSVPRLWTKFQQGILAKLPPEKLNLLL 255
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 5e-39
Identities = 85/286 (29%), Positives = 139/286 (48%), Gaps = 25/286 (8%)
Query: 112 YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYD 171
+ + Y Q R L LG+ VGI N PEW I GA I V +Y
Sbjct: 6 WHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYT 65
Query: 172 TLGPDACAFIINQAEISVLIVDDD---SKCNQIIDRAPRCLKKIISIREVRMATMQRARS 228
T P+AC ++ +E ++L+VD+ K I D+ P LK II RE ++
Sbjct: 66 TNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPH-LKAIIQYRE----PLKEKE- 119
Query: 229 RAIEIIRFDEIERVGAQKMFEEVPP-----KPTDLCTICYTSGTTGNPKGVMLTHGNVIA 283
+ + E +G E++ KP CT+ YTSGTTG PKGVML+H N I
Sbjct: 120 --PNLYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDN-IT 176
Query: 284 AISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFL---VGGSIGYYSGD-IK-NL 338
+ A ++ D R + ++S+LPL+H+ + + ++L VGG + + D +K L
Sbjct: 177 WTAKAAVKHMDLRTVGQESVVSYLPLSHIAAQILD--IWLPISVGGCVYFAQPDALKGTL 234
Query: 339 TEDMKTLKPTIMPAVPRLLNRMYDKVMA-QIRPSFIKRLMFNMAMG 383
+ ++ ++PT VPR+ ++ +++ A + + +KR + + A G
Sbjct: 235 VKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKG 280
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 5e-35
Identities = 82/304 (26%), Positives = 138/304 (45%), Gaps = 41/304 (13%)
Query: 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDT 172
++I Y + R NFG GL LG+ GS V IY + EW+ + G + SM+ +Y
Sbjct: 120 RYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYAN 179
Query: 173 LGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRA------ 226
LG DA A+ + + E ++ CN + + ++ + ++ M
Sbjct: 180 LGEDALAYALRETECKAIV------CNG------KNVPNLLRL--MKSGGMPNTTIIYLD 225
Query: 227 ------RSRAIEIIRFDEIERVGAQKMFEEVPPKPT---DLCTICYTSGTTGNPKGVMLT 277
+ ++ + ++ G P DL I YTSGTTG+PKGVM T
Sbjct: 226 SLPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHT 285
Query: 278 HGNVIAAISAALLQLSD--HRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDI 335
HG++ A I A +L+D P+ + S+LPLAH++E + G IG+ G
Sbjct: 286 HGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSP 343
Query: 336 KNLTE-------DMKTLKPTIMPAVPRLLNRMYDKVMAQI-RPSFIKRLMFNMAMGSKEN 387
+ LT+ D+ +P + VPR+ + + V A++ +KR +F+ A S+
Sbjct: 344 RTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLR 403
Query: 388 EIKK 391
+K+
Sbjct: 404 ALKE 407
|
Length = 700 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 6e-35
Identities = 77/287 (26%), Positives = 119/287 (41%), Gaps = 30/287 (10%)
Query: 84 TLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVG 143
TL + A+ + + L + R + Y + RA + L LGV PG V
Sbjct: 12 TLASLLERAARRNPDRPALIFLGRGGR----LTYRELDRRANRLAAALQALGVKPGDRVA 67
Query: 144 IYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIID 203
I N PE++I A + V L L P A+I+N A VLI + +++
Sbjct: 68 ILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFA--ALLE 125
Query: 204 RAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICY 263
L ++ + V A + I + + G + P P DL + Y
Sbjct: 126 AVAEALPVVLVVLLVGDADDRLP-------ITLEALAAEGPGPDADARPVDPDDLAFLLY 178
Query: 264 TSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH-------MLERT 316
TSGTTG PKGV+LTH N++A + L DV++S+LPL H +L
Sbjct: 179 TSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTP-DDVVLSWLPLFHIFGLIVGLL--- 234
Query: 317 CESAMFLVGGSIGYYSG---DIKNLTEDMKTLKPTIMPAVPRLLNRM 360
A L GG++ S D + + ++ K T++ VP L +
Sbjct: 235 ---APLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLREL 278
|
Length = 534 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 1e-24
Identities = 69/291 (23%), Positives = 121/291 (41%), Gaps = 36/291 (12%)
Query: 79 YDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNP 138
D T+ R GA+ + ++ + + Y + R + L LGV
Sbjct: 2 QDYPLTIGRILRHGAR--KHPD----KEAVYFDGRRTTYAELDERVNRLANALRALGVKK 55
Query: 139 GSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLG----PDACAFIINQAEISVLIVDD 194
G V ++ N E++ AY I A+ + P+ A+I+N AE V++VD
Sbjct: 56 GDRVAVFDWNSHEYLE----AYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDS 111
Query: 195 D--SKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVP 252
+ I+ + P ++ +I + A + A E+ ++E+ A F+
Sbjct: 112 EFVPLLAAILPQLPT-VRTVIVEGDGPAAPL------APEVGEYEEL-LAAASDTFDFPD 163
Query: 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNVI--AAISAALLQLSDHRPKYSDVLISFLPLA 310
D + YTSGTTG+PKGV+L+H N+ + A L+LS DV + +P+
Sbjct: 164 IDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSR-----DDVYLVIVPMF 218
Query: 311 HMLERTCESAMFLVGGSI---GYYSGDIKNLTEDMKTLKPTIMPAVPRLLN 358
H+ + G + D +NL + ++T + T AVP +
Sbjct: 219 HVHAWGLPYLALMAGAKQVIPRRF--DPENLLDLIETERVTFFFAVPTIWQ 267
|
Length = 521 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 56/198 (28%), Positives = 87/198 (43%), Gaps = 10/198 (5%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
+ L +A GL LG+ G V + S N E+ G I+ A + PD
Sbjct: 13 FADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTPD 72
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
A + ++ ++ D D +D+ K++ VR+ + A + I
Sbjct: 73 ELAHQLKISKPKLIFCDPD-----ELDKVKEAAKELG--PVVRIIVLDSAPDGVLRIEDL 125
Query: 237 DEIERVGAQKMFEEVPPK--PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD 294
E R+GA+ F P D + Y+SGTTG PKGVML+H N+IA +S L
Sbjct: 126 LEP-RLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKG 184
Query: 295 HRPKYSDVLISFLPLAHM 312
+ +DV+++FLP H
Sbjct: 185 NPDSSNDVVLTFLPFYHA 202
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 4e-23
Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 16/173 (9%)
Query: 209 LKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTT 268
L+KI ++E +A+ I II FD++ + ++ P + +I YTSGT+
Sbjct: 265 LEKIKDLKE-------KAKKLGISIILFDDMTK-NKTTNYKIQNEDPDFITSIVYTSGTS 316
Query: 269 GNPKGVMLTHGNVIAAISAALLQLSDH--RPKYS-DVLISFLPLAHMLERTCESAMFLVG 325
G PKGVML++ N + ++ L H KY+ +S+LP++H+ ER F++G
Sbjct: 317 GKPKGVMLSNKN----LYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLG 372
Query: 326 GSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQI-RPSFIKRLM 377
G+I +S DI ++D+ K I+ VP++ NR+Y +M +I +KR +
Sbjct: 373 GTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFL 425
|
Length = 746 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 1e-22
Identities = 68/288 (23%), Positives = 102/288 (35%), Gaps = 70/288 (24%)
Query: 85 LYDAFRKGAKESNNG---RCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSF 141
L D + A+ + G + ++ Y + + F + L LGV G
Sbjct: 1 LADLLERAARRFPDRPALTFFG--RKLT-------YAELDELSDRFAAYLQQLGVKKGDR 51
Query: 142 VGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQI 201
V + NCP++ I G ++V + P +N + VLIV
Sbjct: 52 VALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVA-------- 103
Query: 202 IDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTI 261
I F++ GA + V P DL +
Sbjct: 104 --------------------------------ISFEDALASGA-PLPLPVELSPDDLAVL 130
Query: 262 CYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM 321
YT GTTG PKG MLTH N++A + + D R D ++ LPL H+ T M
Sbjct: 131 QYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREG-EDRFLTALPLFHIFGLTV--NM 187
Query: 322 FLVGGSIGYYSG---------DIKNLTEDMKTLKPTIMPAVPRLLNRM 360
L G G N+ +++K + TI P VP L N +
Sbjct: 188 LL-----GLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYNAL 230
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 4e-19
Identities = 57/247 (23%), Positives = 91/247 (36%), Gaps = 33/247 (13%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + R +GL G G V + S N E+ + + A+ T P
Sbjct: 35 YAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAV----LSAGAVVTTANPL 90
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
AEI+ + DS ++ +K+ S+ + + A + I
Sbjct: 91 Y-----TPAEIAKQV--KDSGA-KLAITTSELAEKLASLALEPVVLLDSADDGSAAIDDL 142
Query: 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHR 296
+ V K D+ + Y+SGTTG KGVMLTH N+IA + A L+
Sbjct: 143 LFADEPEPPV----VVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANV-AQLVAGEGPN 197
Query: 297 PKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG---------DIKNLTEDMKTLKP 347
DV + LP+ H+ T + L+ G D++ ++ K
Sbjct: 198 FDREDVTLCVLPMFHIYGLT----VILLALL---RLGATVVVMPRFDLEKFLAAIEKYKV 250
Query: 348 TIMPAVP 354
T +P VP
Sbjct: 251 THLPVVP 257
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 9e-19
Identities = 57/246 (23%), Positives = 95/246 (38%), Gaps = 19/246 (7%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFII 182
R R + L LG+ G V I++ N P W+I GA ++V L D A+I+
Sbjct: 39 RVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYIL 98
Query: 183 NQAEISVLIVDDD--SKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240
+ + L V R P L+ ++ + ++ F +
Sbjct: 99 ARGDAKALFVLGLFLGVDYSATTRLPA-LEHVVICET------EEDDPHTEKMKTFTDFL 151
Query: 241 RVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAIS--AALLQLSDHRPK 298
G P D+ I +TSGTTG PKG MLTH +++ + A L L
Sbjct: 152 AAGDPA-ERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGL---TEG 207
Query: 299 YSDVLISFLPLAHMLERT-CESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRL 356
D ++ P H+ +A + G +I D + ++T + T++P P +
Sbjct: 208 --DRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTM 265
Query: 357 LNRMYD 362
N +
Sbjct: 266 YNSLLQ 271
|
Length = 513 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 1e-18
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 24/193 (12%)
Query: 107 NISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPE-----WIITEQGAYC 161
Y R R + L LGV PG V + N + + GA
Sbjct: 18 TPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVL 77
Query: 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDR-APRC--LKKIISIREV 218
+++ L P+ A+IIN AE V+ VDDD +++ APR +K ++ +
Sbjct: 78 HTLNP-----RLSPEQIAYIINHAEDKVIFVDDDFL--PLLEAIAPRLPTVKAVVVYDDA 130
Query: 219 RMATMQRARSRAIEIIRFDE-IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLT 277
M + + ++E +E + + E+ +CYTSGTTGNPKGV+ +
Sbjct: 131 DMP-----ETSLPNVYAYEELLEEESPEYEWPELDE--NTAAGLCYTSGTTGNPKGVVYS 183
Query: 278 H-GNVIAAISAAL 289
H V+ +++AL
Sbjct: 184 HRSLVLHTLASAL 196
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 3e-18
Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 17/190 (8%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI-----ITEQGAYCYSMIIVALYD 171
Y + R R S L LG+ G V + + N P + + GA ++V L
Sbjct: 32 YRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGA-----VLVPLNT 86
Query: 172 TLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAI 231
L D AFI+N +E VL VD + + + A L I + +
Sbjct: 87 RLDADDIAFILNHSEAKVLFVD--QEFLSLAEEALALLSTKEIIDT--EIIVISPAAEDS 142
Query: 232 EIIRFDEIERVGAQKMFEEVPPKPT-DLCTICYTSGTTGNPKGVMLTH-GNVIAAISAAL 289
E ++++ G +PP D ++ YTSGTTGNPKGV+ TH G + A+ +
Sbjct: 143 EEGDYEDL-LAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVI 201
Query: 290 LQLSDHRPKY 299
RP Y
Sbjct: 202 EWGMPDRPVY 211
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 2e-17
Identities = 55/201 (27%), Positives = 80/201 (39%), Gaps = 56/201 (27%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQ------GAYCYSMIIVALY 170
Y + GLL LG+ G VGI++ N PEW++T Q GA I+V
Sbjct: 46 YREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLT-QFATAKIGA-----ILV--- 96
Query: 171 DTLGPDAC-----AFIINQAEISVLIVDD---DSKCNQIIDR-APRC------------- 208
T+ P A + +NQ+ LI D DS ++ AP
Sbjct: 97 -TINP-AYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARL 154
Query: 209 --LKKIISIREVRMATMQR-----ARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTI 261
L+++I + + + M A RA++ + + P D I
Sbjct: 155 PELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQ--------ATL--DPDDPINI 204
Query: 262 CYTSGTTGNPKGVMLTHGNVI 282
YTSGTTG PKG LTH N++
Sbjct: 205 QYTSGTTGFPKGATLTHRNIL 225
|
Length = 559 |
| >gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-16
Identities = 67/285 (23%), Positives = 114/285 (40%), Gaps = 21/285 (7%)
Query: 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSF 141
V++L + + + + RCLG +W+ Y RAR GSGLL LGV PG
Sbjct: 426 VRSLGEMWERSVTRHSTFRCLGQTSESGES-EWLTYGTVDARARELGSGLLALGVRPGDV 484
Query: 142 VGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQI 201
+G+ + +I E Y + L +I++ +I V+ D +S +
Sbjct: 485 IGVDCEASRNIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAIL 542
Query: 202 IDRAPRCLKKIISIREVRMAT-MQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCT 260
R+ R L+ ++ AR I +I ++ +E+ G VP K
Sbjct: 543 TCRS-RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCP---VPLKEHVTTD 598
Query: 261 ICYT-------SGTTGNPKGVMLTHGNVIAAISAALLQ--LSDHRPKYSDVLISFLPLAH 311
+T S + V +TH +V+ IS ++ L K+ ++ F P A
Sbjct: 599 TVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHL--MVHFTPFAM 656
Query: 312 MLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRL 356
+ R +F G ++ + D +L +PTI+ A P L
Sbjct: 657 LFNRVFVLGLFAHGSAVA--TVDAAHLQRAFVKFQPTILVAAPSL 699
|
Length = 1452 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 3e-16
Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 21/199 (10%)
Query: 129 SGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEIS 188
GLL LGV PG VGI++ NC EW++T+ I+V + + + Q+ +
Sbjct: 60 RGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVR 119
Query: 189 VLIVDDDSKCNQIIDRAPRCLKKIIS-----IREVRMATMQRARSRAIE----IIRFDEI 239
+I D K + L + + R+ ++ S A + + E+
Sbjct: 120 WVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHEL 179
Query: 240 ----ERVGAQKMFE-EVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI--AAISAALLQL 292
E V + + E + D I YTSGTTG PKG L+H N++ A L L
Sbjct: 180 QARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGL 239
Query: 293 SDHRPKYSDVLISFLPLAH 311
++H D L +PL H
Sbjct: 240 TEH-----DRLCVPVPLYH 253
|
Length = 558 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 5e-16
Identities = 68/295 (23%), Positives = 119/295 (40%), Gaps = 31/295 (10%)
Query: 105 RQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSM 164
+ R Y ++ N+ + R N LG+ G V ++ NCPE+I G
Sbjct: 31 SGGVVRRYSYLELNEEINRTANL---FYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGA 87
Query: 165 IIVALYDTLGPDACAFIINQAEISVLIVDDD--SKCNQIIDRAPRCLKKIISIREVRMAT 222
I+V + L + A+I+ ++ S+L+ QI L+ I R
Sbjct: 88 IMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVA---- 143
Query: 223 MQRARSRAIE-IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNV 281
A + + F +++ + P D I +TSGTT PKGV++TH N+
Sbjct: 144 -----LPADDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNL 198
Query: 282 IAA--ISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM--FLVGGS---IGYYSGD 334
A SA L + DV ++ +P H ++ C +AM F G + + YS
Sbjct: 199 RFAGYYSAWQCAL-----RDDDVYLTVMPAFH-IDCQCTAAMAAFSAGATFVLLEKYSA- 251
Query: 335 IKNLTEDMKTLKPTIMPAVPRLLNR-MYDKVMAQIRPSFIKRLMFNMAMGSKENE 388
+ + + TI +P ++ M A R ++ +MF + + +E +
Sbjct: 252 -RAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSDQEKD 305
|
Length = 517 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 9e-16
Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 10/184 (5%)
Query: 128 GSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEI 187
+ LL LG+ G V N + + + V + L + A+I++ +
Sbjct: 50 AAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGA 109
Query: 188 SVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKM 247
+VD + A L + + ++ + R + F + G+
Sbjct: 110 RAFLVDPA-----LAPTAEAALALLPV-DTLILSLVLGGREAPGGWLDFADWAEAGSVAE 163
Query: 248 FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFL 307
+ V DL I YTSGT PKG MLTH +IA + ++ D D+ + L
Sbjct: 164 PD-VELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-DMSA--DDIPLHAL 219
Query: 308 PLAH 311
PL H
Sbjct: 220 PLYH 223
|
Length = 523 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 257 DLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLER- 315
D I YTSGTTG PKGV+L+H N++A A + DVL+S LPL H++
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEG---DVLLSVLPLFHVVGGG 57
Query: 316 TCESAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRM 360
+ L GG++ Y G + E ++ + T++ VP L + +
Sbjct: 58 SGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL 104
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 3e-15
Identities = 63/260 (24%), Positives = 84/260 (32%), Gaps = 33/260 (12%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + L LG G V IY N PE +I I + L +
Sbjct: 43 YGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAE 102
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
A A I VLI DD + R + + + V + + R + +
Sbjct: 103 AVADRIADLGPKVLIADDGT------FRNGKEIALLEDADAVLSSVVVVPRLG----LWY 152
Query: 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHR 296
DE A + FE P D + YTSGTTG PKG++ +HG + D
Sbjct: 153 DE-AVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLL 211
Query: 297 PK-----YSDV-------LISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKT 344
P SD F PLA + L G Y + E
Sbjct: 212 PGDRFWNSSDPGWIYGLWYSVFSPLAS------GATTVLYDGRPFYSPERLWEALEKY-- 263
Query: 345 LKPTIMPAVPRLLNRMYDKV 364
K TI P L R K+
Sbjct: 264 -KVTIFGTSPTFL-RRLMKL 281
|
Length = 528 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 6e-15
Identities = 47/198 (23%), Positives = 64/198 (32%), Gaps = 64/198 (32%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLG 174
I Y + L L GV G V +Y QN P+++I ++V +
Sbjct: 2 ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61
Query: 175 PDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234
I+N + VLIV
Sbjct: 62 EAELEHILNDSGARVLIV------------------------------------------ 79
Query: 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA-AISAALLQLS 293
E++ V I YTSGTTG PKG M TH V+A A ++A
Sbjct: 80 -GSELDDVAV----------------IPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGL 122
Query: 294 DHRPKYSDVLISFLPLAH 311
VL++FLPL H
Sbjct: 123 TP----DSVLLAFLPLFH 136
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 3e-14
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 28/193 (14%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGP----DAC 178
RAR + L LG PG V + + +++ G I V
Sbjct: 32 RARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRLGRHLARL 90
Query: 179 AFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDE 238
A I+ A ++ + +R A + + + +I D+
Sbjct: 91 AAILADAGARAVLTTSAV------------------LAALRAA-LAAPAALLLLLIAADD 131
Query: 239 IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPK 298
+ + A + PP P D+ + YTSG+TG PKGVM+THGN++A + A+ + P
Sbjct: 132 LAALAAA-DWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANL-RAIARAFGLDP- 188
Query: 299 YSDVLISFLPLAH 311
DV +S+LPL H
Sbjct: 189 -DDVGVSWLPLYH 200
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 3e-14
Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 13/217 (5%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLG 174
+ Y R SGL GLG+ G V IY E + GA + V + L
Sbjct: 26 LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85
Query: 175 PDACAFIINQAEISVLIVDDDSKCNQIIDRAPRC--LKKIISIREVRMATMQRARSRAIE 232
+ A I+ + +L+ + + + + P C L+ +I + + A+ E
Sbjct: 86 AEQVAHILADCNVRLLVTSSE-RLDLLHPALPGCHDLRTLIIVGDPAHASEGHPGE---E 141
Query: 233 IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA-AISAALLQ 291
+ ++ +G P +D+ I YTSG+TG PKGV+L+H N++A A S A
Sbjct: 142 PASWPKLLALGDAD--PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVA--T 197
Query: 292 LSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSI 328
++RP D L++ LPL+ + F VG ++
Sbjct: 198 YLENRPD--DRLLAVLPLSFDYGFNQLTTAFYVGATV 232
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 9e-14
Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 19/194 (9%)
Query: 134 LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVD 193
GV G V +Y QN P+++I + ++V + + A + + V IV
Sbjct: 56 CGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVG 115
Query: 194 DD--SKCNQIIDRAPRCLKKIISIR---------EVRMATMQRARSRAIEIIRFDEI--- 239
+ K + L+ +I + E+ + RA + +
Sbjct: 116 SELAPKVAPAVGNLR--LRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWK 173
Query: 240 ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKY 299
E + A P DL + YTSGTTG PKG M TH V+A ++L +
Sbjct: 174 EALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTP--- 230
Query: 300 SDVLISFLPLAHML 313
V+++ LPL H+
Sbjct: 231 ESVVLAVLPLFHVT 244
|
Length = 546 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 73/273 (26%), Positives = 111/273 (40%), Gaps = 55/273 (20%)
Query: 130 GLLGLGVNPGSFVGIYSQNCPEWIIT-----EQGAYCYSMIIVALYDTL-------GPDA 177
GL LGV PG V I NCP+ I+ GA +V ++ L P
Sbjct: 73 GLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGA------VVVEHNPLYTAHELEHP-- 124
Query: 178 CAFIINQAEISVLIVDDD--SKCNQIIDRAPRCLKKIISIREVR-MATMQR--------- 225
F + A V IV D ++ P L+ I+S+ + M +QR
Sbjct: 125 --FEDHGAR--VAIVWDKVAPTVERLRRTTP--LETIVSVNMIAAMPLLQRLALRLPIPA 178
Query: 226 -ARSR------AIEIIRFDEIER--VGAQKMFEEVP-PKPTDLCTICYTSGTTGNPKGVM 275
++R A + ++ + +G P P P D+ I YTSGTTG PKG
Sbjct: 179 LRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQ 238
Query: 276 LTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERT-CESAMFLVGGSIGYY-SG 333
LTH N+ A + + + +++ LP+ H T C + +GG + +
Sbjct: 239 LTHRNLFANAAQGKAWVPGLGDG-PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAP 297
Query: 334 DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMA 366
DI + + MK PT +P VP L Y+K+
Sbjct: 298 DIDLILDAMKKHPPTWLPGVPPL----YEKIAE 326
|
Length = 573 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 2e-13
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHM 312
P D I YTSGTTG PKG MLTH NV+ + +L D + +PL H+
Sbjct: 1 PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEG---DRTLVPVPLFHV 55
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-13
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 256 TDLCTICYTSGTTGNPKGVMLTHGNVI--AAISAALLQLSDHRPKYSDVLISFLPLAHM- 312
D I YTSGTTG PKGV+LTH ++ A ++A LL L DVL++ LPL H+
Sbjct: 81 VDTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRP-----DDVLLTPLPLFHIN 135
Query: 313 -LERTCESAMFLVGGSI 328
+ A LVG ++
Sbjct: 136 AQAYSV-YAALLVGATL 151
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 29/166 (17%)
Query: 133 GLGVNPGSFVGIYSQNCPE-WIITEQGAYCYS-MIIVALYDTLGPDACAFIINQAEISVL 190
LG+ G V + S N PE + GA + + AL+ D A+++ A IS L
Sbjct: 56 ALGLGTGDAVALLSLNRPEVLMA--IGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTL 113
Query: 191 IVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEE 250
IVD ++RA L ++ S++ V + + + + A +
Sbjct: 114 IVDP----APFVERALALLARVPSLKHV------------LTLGPVPDGVDLLAA--AAK 155
Query: 251 VPPKP-------TDLCTICYTSGTTGNPKGVMLTHGNVIAAISAAL 289
P P D+ + YT GTTG PKGVM TH ++ L
Sbjct: 156 FGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQL 201
|
Length = 524 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-13
Identities = 51/250 (20%), Positives = 92/250 (36%), Gaps = 22/250 (8%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + +G+ L LG+ + V + + PE+ GA + V + L PD
Sbjct: 33 YGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTPD 92
Query: 177 ACAFIINQAEISVLIVDDD--SKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234
+ +N + VL++ ++ + + P L+ +I + + A+ A
Sbjct: 93 DYRYYLNDSRARVLVISEELWEVLKPALQKDPH-LRHVIVVGGAGPGALSYAQLIA---- 147
Query: 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD 294
A + E D+ Y+SG+TG PKGV+ H +++ A +
Sbjct: 148 --------TAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNVLG 199
Query: 295 HRPKYSDVLISF--LPLAHMLERTCESAMFLVGGSIGYYSGDIK--NLTEDMKTLKPTIM 350
DV+ S L A+ L + VG + + ++ KPT+
Sbjct: 200 ITE--DDVVFSAAKLFFAYGLGNGLYFPLS-VGATTVLMPERPTPDAVFATIERYKPTVF 256
Query: 351 PAVPRLLNRM 360
VP L M
Sbjct: 257 FGVPTLYAAM 266
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 4e-13
Identities = 68/272 (25%), Positives = 116/272 (42%), Gaps = 31/272 (11%)
Query: 115 IHYNQALLRARNFGSGLLG-LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTL 173
I Y +A F + LLG L + G V + NC ++ I G + +V +
Sbjct: 51 ITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLY 110
Query: 174 GPDACAFIINQAEISVLIVDDD--SKCNQIIDRAPRCLKKIIS----------------- 214
P + + SVL+V D+ + Q+I P +K++I+
Sbjct: 111 TPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTP--VKQVITTGLGDMLGFPKAALVNF 168
Query: 215 -IREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKG 273
++ V+ + + AI RF E +G + + +P D+ + YT GTTG KG
Sbjct: 169 VVKYVKKLVPEYRINGAI---RFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKG 225
Query: 274 VMLTHGNVIAAISAA--LLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFL-VGGSIGY 330
MLTH N++A + A L + + +V+I+ LPL H+ T +F+ +GG
Sbjct: 226 AMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHL 285
Query: 331 YSG--DIKNLTEDMKTLKPTIMPAVPRLLNRM 360
S D+ +++K + T V L N +
Sbjct: 286 ISNPRDMPGFVKELKKTRFTAFTGVNTLFNGL 317
|
Length = 560 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 6e-13
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 172 TLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRAR---S 228
T G + QA I +I S+ +++ + ++ + VR+ ++ R S
Sbjct: 64 TAGEEGLRSACKQAGIKTVIT---SR--AFLEKL-KLEGLVVLLEGVRIVYLEDLRAKIS 117
Query: 229 RAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAA 288
+A ++ F + A KP D I +TSG+ G PKGV+L+H N++A I
Sbjct: 118 KADKLKAFLAAKLPPALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANI--- 174
Query: 289 LLQLSDH-RPKYSDVLISFLPLAHMLERT-CESAMFLVGGSIGYYSG--DIKNLTEDMKT 344
Q++ DVL+ LPL H T L G + YY D K + E ++
Sbjct: 175 -DQIAAVIDLNTEDVLLGALPLFHAFGLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRD 233
Query: 345 LKPTIMPAVPRLLN 358
K TI+ P L
Sbjct: 234 YKATILCGTPTFLR 247
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 9e-13
Identities = 47/198 (23%), Positives = 66/198 (33%), Gaps = 57/198 (28%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + A + L LGV PG V N E+++ +I +
Sbjct: 4 YGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRER 63
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
FI+ QA VL V R F
Sbjct: 64 ELGFILRQARARVLFV------------------------------PDEFRG-------F 86
Query: 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAIS--AALLQLSD 294
D + +P D+ + YTSGTTG PKGVM TH ++A + L L+
Sbjct: 87 D----------YAAMP---DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTP 133
Query: 295 HRPKYSDVLISFLPLAHM 312
DV++ PLAH+
Sbjct: 134 -----DDVVLMPSPLAHI 146
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 63/249 (25%), Positives = 95/249 (38%), Gaps = 30/249 (12%)
Query: 134 LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLI-- 191
LGV PG V N PE G I + L P+ A ++ A VL+
Sbjct: 78 LGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTL 136
Query: 192 -----VDDDSKCNQIIDRAPRCLKKIISI-------REVRMATMQRARSRAIEIIRFD-E 238
D K +++ P L+ ++ + R+A R I+ FD E
Sbjct: 137 GPFPGTDIWQKVAEVLAALPE-LRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAE 195
Query: 239 IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA-AISAALLQLSDHRP 297
+ R ++F P P D+ +T GTTG PK THGN +A A ALL
Sbjct: 196 LARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGP-- 253
Query: 298 KYSDVLISFLPLAHM--LERTCESAMF-----LVGGSIGYYS-GDIKNLTEDMKTLKPTI 349
D + LPL H+ L T + + ++ GY G I N + ++ +
Sbjct: 254 --GDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINF 311
Query: 350 MPAVPRLLN 358
+ VP +
Sbjct: 312 LSGVPTVYA 320
|
Length = 632 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 5e-12
Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 248 FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFL 307
FE VP DL I YTSGTTG KG ML+HGN + + + L+ P DVLI L
Sbjct: 148 FETVPRGADDLAAILYTSGTTGRSKGAMLSHGN-LLSNALTLVDYWRFTPD--DVLIHAL 204
Query: 308 PLAH 311
P+ H
Sbjct: 205 PIFH 208
|
Length = 504 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 7e-12
Identities = 26/55 (47%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 257 DLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
D I YTSGTTG PKGVMLTH N++A AL + DV + PL H
Sbjct: 2 DPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSP---GDVYLLAAPLYH 53
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 62/223 (27%), Positives = 91/223 (40%), Gaps = 29/223 (13%)
Query: 103 GWRQNISR----PYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQG 158
G R+ ++R P Y Q RA L G+ G V + N + G
Sbjct: 24 GNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYG 83
Query: 159 AYCYSMIIVALYDTLGP----DACAFIINQAEISVLIVDDD--SKCNQIIDRAPRCLKKI 212
M I A+ T+ P + A+IIN AE V+I D +I D+ P + +
Sbjct: 84 I----MGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYV 139
Query: 213 ISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPK 272
+ M + A E E + A K F+E +CYTSGTTG+PK
Sbjct: 140 VLTDAAHMPQTTLKNAVAYEEW-IAEADGDFAWKTFDE-----NTAAGMCYTSGTTGDPK 193
Query: 273 GVMLTH-GNVIAAISAAL---LQLSDHRPKYSDVLISFLPLAH 311
GV+ +H NV+ A+ A L S +D ++ +PL H
Sbjct: 194 GVLYSHRSNVLHALMANNGDALGTSA-----ADTMLPVVPLFH 231
|
Length = 542 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 30/55 (54%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 257 DLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
D I YTSGTTG PKGV+LTHGN +AA + AL++ SDVL+ LPL H
Sbjct: 89 DPALIIYTSGTTGRPKGVVLTHGN-LAANARALVEAWRWTA--SDVLLHALPLHH 140
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 56/243 (23%)
Query: 131 LLGLGVNPGSFVGIYSQNCPEWIIT-----EQGAYCYSMIIVALYDTLGPDACAFIINQA 185
L LGV G V + +N E I+ + GA + V L L + + ++ A
Sbjct: 44 LAALGVKKGDRVALLMKNGMEMILVIHALQQLGA-----VAVLLNTRLSREELLWQLDDA 98
Query: 186 EISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQ 245
E+ LI DDD + K+I V+ A + EI Q
Sbjct: 99 EVKCLITDDDFE------------AKLIPGISVKFAELMNGPKEEAEI-----------Q 135
Query: 246 KMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA-AISAAL-LQLSDHRPKYSDVL 303
+ F+ ++ TI YTSGTTG PKGV+ T+GN A+ +AL L L++ D
Sbjct: 136 EEFDL-----DEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTED-----DCW 185
Query: 304 ISFLPLAHM--LERTCESAMF---LVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLL 357
++ +P+ H+ L S + + G + D + + + ++T TI+ V +L
Sbjct: 186 LAAVPIFHISGL-----SILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTML 240
Query: 358 NRM 360
R+
Sbjct: 241 QRL 243
|
Length = 483 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 257 DLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERT 316
DL I YTSG+TG PKGVML+H N+ A + ++ Q + D +++ LP + +
Sbjct: 3 DLAAIIYTSGSTGEPKGVMLSHRNLTAG-ARSIAQYLELTED--DRILAVLPFSFDYGLS 59
Query: 317 CESAMFLVGGSIGYYSGDI--KNLTEDMKTLKPTIMPAVP 354
F VGG++ S +++ + + + T VP
Sbjct: 60 QLLTAFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVP 99
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-11
Identities = 47/181 (25%), Positives = 70/181 (38%), Gaps = 28/181 (15%)
Query: 134 LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVD 193
L V G + I SQN E+I+ I V L L + F + + +VL V+
Sbjct: 48 LNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVE 107
Query: 194 DDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPP 253
+ MA + S +I ++ + +K+ V
Sbjct: 108 KTFQN---------------------MALSMQKVSYVQRVISITSLKEIEDRKIDNFVEK 146
Query: 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVI--AAISAALLQLSDHRPKYSDVLISFLPLAH 311
+ ICYTSGTTG PKG +LT N+ A + + L+ H D I LPL H
Sbjct: 147 NESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMH-----DRSIVLLPLFH 201
Query: 312 M 312
+
Sbjct: 202 I 202
|
Length = 496 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 5e-11
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLS 293
++F++ GA + E P+ D+ + YT GTTG KG MLTH N++A + +
Sbjct: 185 VKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMG 244
Query: 294 DHRPKYSDVLISFLPLAHMLERT--CESAMFLVGG 326
+ + ++LI+ LPL H+ T C AM L+G
Sbjct: 245 SNLNEGCEILIAPLPLYHIYAFTFHC-MAMMLIGN 278
|
Length = 562 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-11
Identities = 53/195 (27%), Positives = 74/195 (37%), Gaps = 18/195 (9%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFII 182
R R S L G+ G V + N P + G ++ L L + AF++
Sbjct: 52 RCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFML 111
Query: 183 NQAEISVLIVDDDSKCNQIIDRAPRCLK--KIISIREVRMATMQRARSRAIEIIRFDEIE 240
E VLIVD ++ ++ A L K + I +V I + E
Sbjct: 112 RHGEAKVLIVD--TEFAEVAREALALLPGPKPLVI-DVDDPEYPGG-----RFIGALDYE 163
Query: 241 RVGAQ--KMFEEVPPKPT-DLCTICYTSGTTGNPKGVMLTH-GNVIAAISAALLQLSDHR 296
A F P D + YTSGTTGNPKGV+ H G + A+S L
Sbjct: 164 AFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKH 223
Query: 297 PKYSDVLISFLPLAH 311
P Y + LP+ H
Sbjct: 224 PVY----LWTLPMFH 234
|
Length = 545 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAI--SAALLQ 291
+RF++ GA++ F+ V P D+ + YT GTTG KG L H N++A + A LQ
Sbjct: 182 VRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQ 241
Query: 292 LSDHRPKYSDVLISF--LPLAHMLERTCESAMFLVGGSIGYY---SGDIKNLTEDMKTLK 346
+ + D L LPL H+ T + + G DI +++K +
Sbjct: 242 PAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQ 301
Query: 347 PTIMPAVPRLLNRM 360
I PAV L N +
Sbjct: 302 VHIFPAVNTLYNAL 315
|
Length = 557 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 20/137 (14%)
Query: 245 QKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA-AI-SAALLQLSDHRPKYSDV 302
Q+ ++ P TI +TSG+TG PK V+ T GN +A A SA L L+ D
Sbjct: 66 QQQLADLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTP-----DDN 120
Query: 303 -LISFLPLAHM-----LERTCESAMFLVGGSIGYYS-GDIKNLTEDMKTLKPTIMPAVPR 355
L+S LPL H+ + R+ L GG++ D + + E ++ T + VP
Sbjct: 121 WLLS-LPLFHVSGLAIVMRS-----LLAGGALVLPDKFDAEAIAEALENHGVTHISLVPT 174
Query: 356 LLNRMYDKVMAQIRPSF 372
L R+ + + A+ S
Sbjct: 175 QLQRLLESLGARWLSSL 191
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 33/212 (15%)
Query: 115 IH---YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI-----ITEQGAYCYSMII 166
IH Y RA+ L LGV PG VG + N + ++ GA C++
Sbjct: 37 IHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHT--- 93
Query: 167 VALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDR-APRCLKKIISIRE-VRMATMQ 224
+ L P+ A+I+N AE ++ D ++D AP+C +++ V M
Sbjct: 94 --INPRLFPEQIAYIVNHAEDRYVLFD--LTFLPLVDALAPQC----PNVKGWVAMTDAA 145
Query: 225 RARSRAIEIIRFDEIERVGAQKMFEEVPP-KPTDLCTICYTSGTTGNPKGVMLTH-GNVI 282
+ + ++ ++ + VGAQ + P ++CYTSGTTGNPKG + +H V+
Sbjct: 146 HLPAGSTPLLCYETL--VGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVL 203
Query: 283 AAISAAL---LQLSDHRPKYSDVLISFLPLAH 311
A AAL + LS D ++ +P+ H
Sbjct: 204 HAYGAALPDAMGLSA-----RDAVLPVVPMFH 230
|
Length = 539 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLA--- 310
P D + YTSG+TG PKGV++TH N+ + A L RP D ++ F +A
Sbjct: 97 SPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAIL-GIRP--GDRVLQFASIAFDV 153
Query: 311 HMLERTCESAMF---LVGGSIGYYSGDIK--NLTEDMKTLKPTIMPAVPRLLNRM 360
+LE +F L GG++ +++ +L E + L+ T+ P LL +
Sbjct: 154 SILE------IFTTLLAGGTLVIPPEELRLEDLAEFLNRLRVTVAHLTPSLLALL 202
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 3e-10
Identities = 75/285 (26%), Positives = 118/285 (41%), Gaps = 22/285 (7%)
Query: 84 TLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVG 143
TL D K A + L +R RP I Y + A + LL G + V
Sbjct: 22 TLPDLLSKAAADYGPRPALEFRD---RP---ITYTELEAMAETAAAALLRAGYGKDASVA 75
Query: 144 IYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIID 203
+Y N P+ I GA +V L G A + ++ + +LI D + ++
Sbjct: 76 LYLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAA---LLP 132
Query: 204 RAPRCLKKIISIREV--------RMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKP 255
A + L+K + R + ++ T Q I+ + + + GA E P
Sbjct: 133 MALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVK-GAAAPAEWPAVTP 191
Query: 256 TDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDV--LISFLPLAHML 313
D+ + YT GTTG PKG MLTHGN+ +A+S + R DV +I LPL H+
Sbjct: 192 DDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIY 251
Query: 314 ERTCESAMFLVGGSI--GYYSGDIKNLTEDMKTLKPTIMPAVPRL 356
T L G + + D+ + D++ + T+ P VP +
Sbjct: 252 ALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTM 296
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 44/181 (24%), Positives = 61/181 (33%), Gaps = 49/181 (27%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y++ SGL LG+ G VGIY PE ++ I V ++ GPD
Sbjct: 10 YSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFGPD 69
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
A A + AE VLI D +R R + +++
Sbjct: 70 AVATRLQDAEAKVLITAD------------------GFLR----------RGKRVDL--- 98
Query: 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHR 296
D I YTSGTTG PKG + TH + + D +
Sbjct: 99 ------------------KDDPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLK 140
Query: 297 P 297
P
Sbjct: 141 P 141
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 36/170 (21%), Positives = 55/170 (32%), Gaps = 35/170 (20%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA----YCYSMIIVALYDT 172
Y + RA L GV PG V + + PE ++ Y V L
Sbjct: 15 YAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAY----VPLDPA 70
Query: 173 LGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIE 232
+ AF++ + VL+ D+ L + ++ +
Sbjct: 71 YPAERLAFMLEDSGARVLLTDES-------------LAPLARADQLPLVI---------- 107
Query: 233 IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI 282
E E DL + YTSG+TG PKGV + H V+
Sbjct: 108 ----LEEELDAEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 5e-10
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 200 QIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLC 259
+++ P L + + RA A+ ++ +E+ P +P D
Sbjct: 115 ELLGS-PVILTDAALVAALA-GLRTRAGLEALRVLAIEELRSAPPDAPL--HPARPDDPA 170
Query: 260 TICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
+ TSG+TG PK V+LTH N++A SA +Q++ P DV ++++PL H
Sbjct: 171 LLLLTSGSTGVPKCVVLTHRNILAR-SAGTVQVNGFTPD--DVSLNWMPLDH 219
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-10
Identities = 45/197 (22%), Positives = 69/197 (35%), Gaps = 40/197 (20%)
Query: 123 RARNFGSGLLGL-GVNPGSFVGIYSQNCPEWIIT------EQGAYCYSMIIVALYDTLGP 175
RA L GV PG V + + E ++ AY V L D P
Sbjct: 8 RANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAY------VPL-DPAYP 60
Query: 176 DA-CAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234
AFI+ A +L+ D + R + +I +
Sbjct: 61 AERLAFILEDAGARLLLTDS-----ALASRLAGLVLPVILLD-----------------P 98
Query: 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD 294
+ P P DL + YTSG+TG PKGV++TH +++ + A L +
Sbjct: 99 LELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLL-AWLARRYG 157
Query: 295 HRPKYSDVLISFLPLAH 311
P D ++ F L+
Sbjct: 158 LDP--DDRVLQFASLSF 172
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 8e-10
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 7/59 (11%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAAL--LQLSDHRPKYSDVLISFLPLAH 311
P D+ I ++SG+TG PKGV+LTH N++ I A + +++ DV +S++PL H
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITS-----EDVFLSWMPLTH 158
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 252 PPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD-HRPKYSDVLISFLPLA 310
KP D TI ++SG+ G PKGVML+H N+++ I Q+SD + DV++S LP
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIE----QISDVFNLRNDDVILSSLPFF 833
Query: 311 H 311
H
Sbjct: 834 H 834
|
Length = 1146 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 59/216 (27%), Positives = 83/216 (38%), Gaps = 54/216 (25%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGP- 175
Y L +R +GL LG+ G V + NCPE+++ GA S A+ T P
Sbjct: 53 YADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGA---SRR-GAVTTTANPF 108
Query: 176 ------------DACAFIINQA----EISVLIVDDDSKCNQIIDRAPRCLKKIISIREVR 219
II Q+ ++ L DD I D CL E+
Sbjct: 109 YTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCL----HFSELT 164
Query: 220 MATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHG 279
A DE E EV P D+ + Y+SGTTG PKGVMLTH
Sbjct: 165 QA---------------DENE-------LPEVEISPDDVVALPYSSGTTGLPKGVMLTHK 202
Query: 280 NVIAAISAALLQLSDHRP----KYSDVLISFLPLAH 311
++ +++ Q+ P DV++ LP+ H
Sbjct: 203 GLVTSVAQ---QVDGENPNLYFHSDDVILCVLPMFH 235
|
Length = 537 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 2e-09
Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 38/177 (21%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI-----ITEQGAYCYSMIIVALYD 171
Y + RA L+ LGV PG V I + E + + + GA Y V L
Sbjct: 255 YAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGA-AY----VPLDP 309
Query: 172 TLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAI 231
+ A+I+ + ++L+ R +
Sbjct: 310 LYPAERLAYILEDSRPTLLLTQAHL----------------------------RVDDVGL 341
Query: 232 EIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAA 288
+ D+ L I YTSG+TG PKGV + H + ++ A
Sbjct: 342 PGLALDDALSEIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDA 398
|
Length = 642 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 209 LKKIISIREVRMATMQRARSRAIE---IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTS 265
I++ R ++ E ++ + P DL + +TS
Sbjct: 76 RAAILARAGARAVLTDPGLAQPEEAPDLLVVADDAAAAESPAPPPPRVDPDDLAYVIFTS 135
Query: 266 GTTGNPKGVMLTHGNVIAAI 285
G+TG PKGVM+TH + I
Sbjct: 136 GSTGEPKGVMITHRAAVNTI 155
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 35/173 (20%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA-----------YCYSMIIVALYD 171
RA L+ G+ PG VGIY++N E++ GA Y Y
Sbjct: 37 RANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYV-------- 88
Query: 172 TLGPDACAFIINQAEISVLIVDD--DSKCNQIIDRAPRCLKKIISIREVRMATMQRARSR 229
D ++++ ++ L+ + + +++ R P+ L+ ++ + + +
Sbjct: 89 ---EDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPK-LRTLVVVED---GSGNDLLPG 141
Query: 230 AIEIIRFDEIERVG-AQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNV 281
A++ +++ G ++ F E P DL + YT GTTG PKGVM ++
Sbjct: 142 AVD---YEDALAAGSPERDFGE--RSPDDLYLL-YTGGTTGMPKGVMWRQEDI 188
|
Length = 533 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 40/168 (23%), Positives = 62/168 (36%), Gaps = 12/168 (7%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + + F + L LGV G V I+ PE GA I+ L++ +
Sbjct: 76 YKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEE 135
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIE-IIR 235
A + +E VLI + D P LK ++ + E +
Sbjct: 136 AVRDRLEDSEAKVLITTPALLERKPADDLP-SLKHVLLVGED---------VEEGPGTLD 185
Query: 236 FDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA 283
F+ A F+ D + YTSG+TG PKGV+ H ++
Sbjct: 186 FNA-LMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQ 232
|
Length = 570 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLS 293
+ F + R G + VP D+ + YT GTTG KG MLTHGN++A + LS
Sbjct: 185 VPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLS 244
Query: 294 DHRP-------KYSDVLISFLPLAHMLERTCESAMFLVGGS 327
P + +V+I+ LPL H+ T +V G+
Sbjct: 245 QLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGN 285
|
Length = 562 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA 287
+ R GA F P D+ I +TSG+TG PKGV+ THG A I A
Sbjct: 155 ATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEA 205
|
Length = 552 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 9e-09
Identities = 52/223 (23%), Positives = 84/223 (37%), Gaps = 25/223 (11%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI-----ITEQGAYCYSMIIVAL 169
I Y + RA + GV G V + +N PE++ + + GA +VAL
Sbjct: 63 ISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGA------VVAL 116
Query: 170 YDT-LGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARS 228
+T A +N + LIV ++ + + A L + + T+
Sbjct: 117 LNTQQRGAVLAHSLNLVDAKHLIVGEE--LVEAFEEARADLARPPRLWVAGGDTLD-DPE 173
Query: 229 RAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAIS-- 286
++ V K D YTSGTTG PK +++H + A+
Sbjct: 174 GYEDLAAAAAGAPTTNPASRSGVTAK--DTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGF 231
Query: 287 AALLQLSDHRPKYSDVLISFLPLAHMLERT-CESAMFLVGGSI 328
LL+L+ DVL LPL H T S++ G ++
Sbjct: 232 GGLLRLTPD-----DVLYCCLPLYHNTGGTVAWSSVLAAGATL 269
|
Length = 600 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 70/342 (20%), Positives = 113/342 (33%), Gaps = 112/342 (32%)
Query: 87 DAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYS 146
D + WR+ + Y +AL + R LL LG++ + I S
Sbjct: 10 DRVFLAERRGGGE----WRR--------VTYAEALRQVRAIAQALLDLGLSAERPLMILS 57
Query: 147 QNCPEWIITEQGA------YC-----YSMI------IVALYDTLGP------DACAFIIN 183
N E + A YS++ + ++D L P D AF
Sbjct: 58 GNSIEHALLALAAMYAGVPVAPVSPAYSLLSKDFAKLRHIFDLLTPGAVFAEDGAAF--- 114
Query: 184 QAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVG 243
++ L + + R A + + A++ VG
Sbjct: 115 ARALAALGLAGVP---VVAVRGA-----PGGPAIAFAALLATPPTAAVD----AAFAAVG 162
Query: 244 AQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQ----LSDHRPKY 299
P + +TSG+TG PK V+ TH + A A + Q L++ P
Sbjct: 163 -----------PDTVAKYLFTSGSTGLPKAVINTHRM-LCANQAMIAQCWPFLTEEPP-- 208
Query: 300 SDVLISFLPLAH----------MLERTCESAMFLVGGSIGYYSGD-----------IKNL 338
VL+ +LP H +L GG+ Y D ++NL
Sbjct: 209 --VLVDWLPWNHTFGGNHNFNMVLYN---------GGT--LYIDDGKPVPGLFEETLRNL 255
Query: 339 TEDMKTLKPTIMPAVPR----LLNRMYDKVMAQIRPSFIKRL 376
E + PT+ VP+ L++ + A +R F KRL
Sbjct: 256 RE----VSPTVYFNVPKGFEMLVDALERD--AALRRRFFKRL 291
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 1e-08
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 240 ERVGAQKMFEEVPPK-----PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAA 288
ER+ M E+ K P DL + YTSG+TG PKGVM+ H ++ ++
Sbjct: 74 ERL--AYMLEDSGAKLLLTDPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWL 125
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 51/208 (24%), Positives = 78/208 (37%), Gaps = 43/208 (20%)
Query: 127 FGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAF----II 182
F + L GV G V ++ NCP++ I G + + A++ + P +
Sbjct: 71 FAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGI----LKLGAVHVPVSPLFREHELSYEL 126
Query: 183 NQAEISVLIVDDDSKCNQIID-----RAPRCLKKII--SIREVRMAT-------MQRARS 228
N A VL+ D Q+ RA L+ +I S+ +V A RA
Sbjct: 127 NDAGAEVLLALD-----QLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPR 181
Query: 229 RA----IEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI-- 282
A I+++ PP L + YT GTTG PKG T +++
Sbjct: 182 LAAAGAIDLLPALRACTAPVP----LPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYT 237
Query: 283 -AAISAALLQLSDHRPKYSDVLISFLPL 309
AA A + + V +SFLP
Sbjct: 238 AAAAYAVAVVGGED-----SVFLSFLPE 260
|
Length = 567 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 2e-08
Identities = 61/255 (23%), Positives = 106/255 (41%), Gaps = 26/255 (10%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFII 182
+ + F + L LGV G V I NCP+ +I G I+V + +
Sbjct: 58 KVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQL 117
Query: 183 NQAEISVLI-----------VDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAI 231
+ + V++ V +K +I R + + + +Q+ +S +
Sbjct: 118 HDSGAKVILCLDLVFPRVTNVQSATKIEHVI--VTRIADFLPFPKNLLYPFVQKKQSNLV 175
Query: 232 EIIRFDEIERVGAQKMFE-------EVPPKP-TDLCTICYTSGTTGNPKGVMLTHGNVIA 283
++ E E + E EVP P DL + YT GTTG PKGVMLTH N+++
Sbjct: 176 --VKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVS 233
Query: 284 AISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGG--SIGYYSGDIKNLTED 341
+ L + + + +V++ LP H+ T + ++ G + D+K + E
Sbjct: 234 NTLMGVQWLYNCK-EGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEA 292
Query: 342 MKTLKPTIMPAVPRL 356
+K K T+ P P +
Sbjct: 293 IKKHKVTLFPGAPTI 307
|
Length = 563 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 228 SRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAI-- 285
S A I D + E+ + D+ + GTTG PK + TH + + +
Sbjct: 111 SEAKAYIIADRFSGFDYAALARELLEELPDVALFQLSGGTTGLPKLIPRTHNDYLYSARA 170
Query: 286 SAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM--FLVGG 326
SA L V ++ LP AH + + L GG
Sbjct: 171 SAEACGLDPG-----TVYLAVLPAAHNFTLSSPGLLGALLAGG 208
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 4e-08
Identities = 50/235 (21%), Positives = 80/235 (34%), Gaps = 46/235 (19%)
Query: 135 GVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDD 194
G+ GS V + QN E ++ I L L + + ++ +L+ D
Sbjct: 20 GIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDS 79
Query: 195 DSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPK 254
L++ + + D IE G +
Sbjct: 80 -------------LLEE-----------------KDFQADSLDRIEAAGRYETSLSASFN 109
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH--- 311
+ T+ +TSGTTG PK V T N A+ + L D + LPL H
Sbjct: 110 MDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTE---DDNWLLSLPLYHISG 166
Query: 312 --MLERTCESAMFLVGGSIGYYSGDIKN-LTEDMKTLKPTIMPAVPRLLNRMYDK 363
+L R + G ++ D N L E + + T + VP LNR+ D+
Sbjct: 167 LSILFRW-----LIEGATL--RIVDKFNQLLEMIANERVTHISLVPTQLNRLLDE 214
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 74/341 (21%), Positives = 115/341 (33%), Gaps = 75/341 (21%)
Query: 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFV 142
+++ K A E+ + L R+ ++ + Y +A LL LG++PG V
Sbjct: 49 RSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPV 108
Query: 143 GIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISV---LIVDDDSKCN 199
I S N E + A G + A +S L+ D +K
Sbjct: 109 MILSGNSIEHALMTLAAM-----------QAG-------VPAAPVSPAYSLMSHDHAKLK 150
Query: 200 QIIDR-APRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERV---------GAQKMFE 249
+ D PR V A +RA+ + ++ V + +
Sbjct: 151 HLFDLVKPR----------VVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIAFAD 200
Query: 250 EVPPKPTD-------------LCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHR 296
PT + +TSG+TG PK V+ T ++ A A QL
Sbjct: 201 LAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQR-MMCANIAMQEQLRPRE 259
Query: 297 PKYS-DVLISFLPLAHMLERTCESAMFLVGGSIGYYSG----------DIKNLTEDMKTL 345
P V + ++P H + L GG Y I+NL E +
Sbjct: 260 PDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLRE----I 315
Query: 346 KPTIMPAVPRLLNRMYDKVMAQ---IRPSFIKRLMFNMAMG 383
PT+ VP M + M + +R SF K L MA G
Sbjct: 316 SPTVYGNVPAGYA-MLAEAMEKDDALRRSFFKNLRL-MAYG 354
|
Length = 624 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-08
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAIS--AALLQLSDHRPKYSDVLISFLPLAH 311
P D I +TSGTTG PKGV LTH N++A+ A +L+ D ++ +PL H
Sbjct: 1 PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPS-----DRCLNVMPLFH 54
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 7e-08
Identities = 43/209 (20%), Positives = 76/209 (36%), Gaps = 48/209 (22%)
Query: 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIV----A 168
Q + Y + +A L+ GV P VGI + E ++ ++ V
Sbjct: 536 QVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVV--------GLLAVLKAGG 587
Query: 169 LYDTLGP----DACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQ 224
Y L P D A++++ + + +L+ ++ + P +R + +
Sbjct: 588 AYVPLDPEYPQDRLAYMLDDSGVRLLLTQS-----HLLAQLPVP----AGLRSLCLDE-- 636
Query: 225 RARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHG---NV 281
G EV P +L + YTSG+TG PKGV ++HG N
Sbjct: 637 ------------PADLLCGYSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANY 684
Query: 282 IAAISAALLQLSDHRPKYSDVLISFLPLA 310
+ I+ L +D D ++ A
Sbjct: 685 VCVIAERLQLAAD------DSMLMVSTFA 707
|
Length = 3956 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 7e-08
Identities = 43/182 (23%), Positives = 67/182 (36%), Gaps = 25/182 (13%)
Query: 105 RQNISRPY-----QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159
R+ R Q I Y + R L G+ G V + +N ++ A
Sbjct: 13 RRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAA 72
Query: 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVR 219
+ + + L D A+I+ A +L+VD++ D I I
Sbjct: 73 SYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEE------FDAIVALETPKIVIDAAA 126
Query: 220 MATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHG 279
A +R G ++ + PTDL + YTSGTT PKGVM ++G
Sbjct: 127 QADSRRLAQ--------------GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYG 172
Query: 280 NV 281
N+
Sbjct: 173 NL 174
|
Length = 497 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 8e-08
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLS 293
IR + + A + V DL + TSG+TG+PK V +THGN+ A A+ +
Sbjct: 130 IRVLTVADLLAADPIDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANA-EAMFVAA 188
Query: 294 DHRPKYSDVLISFLPLAH 311
+ + +DV++S+LPL H
Sbjct: 189 EFDVE-TDVMVSWLPLFH 205
|
Length = 545 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGN-VIAAISAALLQLSDHRPKYSDVLISFLPLAHM- 312
P DL +T GTTG PK +H N V A AAL LS P DVL++ LPL H+
Sbjct: 1 PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAAL--LSGLGP--GDVLLNGLPLFHVG 56
Query: 313 -LERTCESAMFLVGGSI------GYYS-GDIKNLTEDMKTLKPTIMPAVPRLLNRM 360
T A G ++ G+ + + N + ++ + T++ AVP +L +
Sbjct: 57 GAIVTG-LAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAAL 111
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 239 IERVGAQKMFEEVPPK-----PTDLCTICYTSGTTGNPKGVMLTHGNVIA 283
ER+ K+ E P P DL I +TSG+TG PKGV ++H N+ +
Sbjct: 77 AERI--AKILEAAGPAALVADPDDLAYILFTSGSTGKPKGVQISHANLAS 124
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 24/197 (12%)
Query: 109 SRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVA 168
S Y W Q R R S L + PGS V + + N P G ++
Sbjct: 43 SVRYTWA---QTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNC 99
Query: 169 LYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKK----------IISIREV 218
+ L AF++ ++ V++VD + + + A + L + +I I +
Sbjct: 100 VNIRLNAPTIAFLLEHSKSEVVMVDQEF--FTLAEEALKILAEKKKSSFKPPLLIVIGDP 157
Query: 219 RMA--TMQRARSR-AIEIIRFDEIERVGAQKMFEEVPPKPT-DLCTICYTSGTTGNPKGV 274
++Q A + AIE +F E F PP + YTSGTT +PKGV
Sbjct: 158 TCDPKSLQYALGKGAIEYEKFLE----TGDPEFAWKPPADEWQSIALGYTSGTTASPKGV 213
Query: 275 MLTH-GNVIAAISAALL 290
+L H G + A+S AL+
Sbjct: 214 VLHHRGAYLMALSNALI 230
|
Length = 567 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 17/137 (12%)
Query: 201 IIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCT 260
I D PR L + +R+ + + A + A E++ D ++ A+ ++E +P D+
Sbjct: 112 IADAEPRLLLTVADLRDSLLQMEELAAANAPELLCVDTLDPALAEA-WQEPALQPDDIAF 170
Query: 261 ICYTSGTTGNPKGVMLTHGNVIAAISAALLQLS---DHRPKYSDVLISFLPLAHMLERTC 317
+ YTSG+T PKGV ++HGN++A + L++ D P DV++S+LPL H
Sbjct: 171 LQYTSGSTALPKGVQVSHGNLVA--NEQLIRHGFGIDLNP--DDVIVSWLPLYH------ 220
Query: 318 ESAMFLVGGSI-GYYSG 333
M L+GG + +SG
Sbjct: 221 --DMGLIGGLLQPIFSG 235
|
Length = 4334 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 4e-07
Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 40/125 (32%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA--ALLQLSDHRPKYSDVL--------- 303
P DL + YTSG+TG PKGV ++H ++ + + L SD L
Sbjct: 92 PDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGA-----SDRLLAVTTISFD 146
Query: 304 IS----FLPLAHMLERTCESAMFLVGGSIGYYS----GDIKNLTEDMKTLKPTIMPAVP- 354
IS LPL L G ++ S D + L + + TIM A P
Sbjct: 147 ISVLELLLPL-------------LSGATVVIASAETVRDPERLARLIADERITIMQATPA 193
Query: 355 --RLL 357
R+L
Sbjct: 194 TWRML 198
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 5e-07
Identities = 55/218 (25%), Positives = 79/218 (36%), Gaps = 49/218 (22%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGP- 175
Y + GL LGV G V N E+ + Y I A+ + L P
Sbjct: 58 YRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVL----YLACSRIGAVLNPLMPI 113
Query: 176 ---DACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIE 232
+F++ AE VL+V P+ + R A M R +
Sbjct: 114 FRERELSFMLKHAESKVLVV-------------PK------TFRGFDHAAMARRLRPELP 154
Query: 233 IIRF---------DEIERVGAQKMFEEVP----------PKPTDLCTICYTSGTTGNPKG 273
+R D E + +E+ P P P D+ + YTSGTTG PKG
Sbjct: 155 ALRHVVVVGGDGADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKG 214
Query: 274 VMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
VM T ++A I +L DV++ P+AH
Sbjct: 215 VMHTANTLMANIVPYAERL---GLGADDVILMASPMAH 249
|
Length = 547 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 6e-07
Identities = 44/211 (20%), Positives = 82/211 (38%), Gaps = 43/211 (20%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLG 174
+ Y++ R + L GV P V + + N + +I ++AL+ LG
Sbjct: 29 LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVI----------ALLALH-RLG 77
Query: 175 PDACAFIIN----QAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRA 230
A ++N AEI+ LI + + A + +
Sbjct: 78 --AVPALMNPRLKPAEIAELIKRGE------MTAAVIAVDAQV-------MDAIFQSGSG 122
Query: 231 IEIIRFDEIERVG----AQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTH----GNVI 282
+ ++ ++ +G A E+ P +P + YTSGTTG PKG ++ V+
Sbjct: 123 VRVLALGDLVGLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVL 182
Query: 283 AAISAALLQLSDHRPKYSDVLISFLPLAHML 313
+ A L+ H +V++ +PL H++
Sbjct: 183 FMSTQAGLRHGRH-----NVVLGLMPLYHVI 208
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 8e-07
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
Query: 134 LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVD 193
LG+ VG NC E + C + L L D IIN AE V++ D
Sbjct: 59 LGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVAD 118
Query: 194 --DDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEV 251
+ +I+ P C++ ++ I + I++ + E G +++
Sbjct: 119 PRLAEQLGEILKECP-CVRAVVFIGPSDADSAAAHMPEGIKVYSY-EALLDGRSTVYDWP 176
Query: 252 PPKPTDLCTICYTSGTTGNPKGVMLTH 278
T ICY++GTTG PKGV+ +H
Sbjct: 177 ELDETTAAAICYSTGTTGAPKGVVYSH 203
|
Length = 576 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 9e-07
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 21/178 (11%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + + R F L LG+ G V + N E+ I G M ++ P
Sbjct: 58 YGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGI----MAAGGVFSGANPT 113
Query: 177 AC-AFIINQAEIS--VLIVDDDSKCNQIIDRAPRCLK-KIISIREVRMATMQRARSRAIE 232
A + I QAE + LIV +D+ ++ + L +I + E ++ +
Sbjct: 114 ALESEIKKQAEAAGAKLIVTNDTNYGKV-----KGLGLPVIVLGEEKIEGAVNWKEL--- 165
Query: 233 IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALL 290
+ +R G EE+ TDLC + ++SGTTG KGVMLTH N++A + ++L
Sbjct: 166 ---LEAADRAGDTSDNEEI--LQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLF 218
|
Length = 546 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
P D+ I +TSGT PKGV LTH N++A A L S PK DV++SFLP H
Sbjct: 182 PEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFS---PKEDDVMMSFLPPFH 235
|
Length = 539 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 249 EEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA--ALLQLSDHRPKYSDVLISF 306
+ +L + +TSGT G PKGVMLTH N++A+ A A L L+ + DV +
Sbjct: 180 TAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLT-----WQDVFMMP 234
Query: 307 LPLAH 311
PL H
Sbjct: 235 APLGH 239
|
Length = 547 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLE 314
P D IC+TSGTTG PKGV ++H A I +L +++ DV + PL H+
Sbjct: 171 PDDAVLICFTSGTTGRPKGVTISH---SALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGG 227
Query: 315 RTCESAMFLVGGS 327
+ AM +VG
Sbjct: 228 LSSALAMLMVGAC 240
|
Length = 563 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 44/208 (21%), Positives = 75/208 (36%), Gaps = 30/208 (14%)
Query: 94 KESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI 153
+ ++N + + I + + + + L LGV PG V Y N PE +
Sbjct: 66 RHADNDPAAIYAAGEDGERREISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAV 125
Query: 154 ITEQGAYCYSMI----IVALYDTLGPD--ACAFI--INQAEISVLIVDD----------- 194
I +M+ I A++ + PD A + Q E VL D
Sbjct: 126 I--------AMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDR 177
Query: 195 DSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPK 254
K +I+ P L+ ++ + + A + + + A FE +P
Sbjct: 178 REKIAEIVKGLPS-LEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERLPF- 235
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVI 282
I Y+SGTTG PK ++ G +
Sbjct: 236 -DHPLWILYSSGTTGLPKCIVHGAGGTL 262
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 41/203 (20%), Positives = 70/203 (34%), Gaps = 21/203 (10%)
Query: 118 NQALLRAR--NFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGP 175
++A LRA + L GV G V ++ NC EW++ ++A+
Sbjct: 37 SRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRS 96
Query: 176 DACAFIINQAEISVLIV-------DDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARS 228
A I+ + L+V D + + A L+ I + + AT A
Sbjct: 97 HEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPG 156
Query: 229 RAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICY-TSGTTGNPKGVMLTHGNVI--AAI 285
+++ + A D + + TSGTT PK V+ ++ A
Sbjct: 157 ARVQLFALPDPAPPAAAG----ERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARA 212
Query: 286 SAALLQLSDHRPKYSDVLISFLP 308
A VL++ LP
Sbjct: 213 IARAYGYDP-----GAVLLAALP 230
|
Length = 540 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 56/266 (21%), Positives = 92/266 (34%), Gaps = 54/266 (20%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + + R G+ L LGV V + + ++ I GA ++ VAL L D
Sbjct: 33 YGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTAD 92
Query: 177 ACAFIINQAEISVLIVDDD--SKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234
A+++ + V+ V + + ++P L+ + + +Q A A E
Sbjct: 93 DYAYMLEDSRARVVFVSGELLPVIKAALGKSPH-LEHRVVVGRPEAGEVQLAELLATE-- 149
Query: 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD 294
+ F+ + D Y+SG+TG PKGV+ TH N
Sbjct: 150 ----------SEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLG 199
Query: 295 HRPKYSDVLIS--------------FLPLA------HMLERTCESAMFLVGGSIGYYSGD 334
R DV+ S P++ M ER A+F
Sbjct: 200 IRE--DDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVF------------ 245
Query: 335 IKNLTEDMKTLKPTIMPAVPRLLNRM 360
+ ++ +PTI VP L M
Sbjct: 246 -----DRLRRHQPTIFYGVPTLYAAM 266
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 44/203 (21%), Positives = 64/203 (31%), Gaps = 19/203 (9%)
Query: 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVAL-YD 171
Y +A A L GV G V + N E++ G I V +
Sbjct: 45 TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTA 104
Query: 172 TLGPDACAFIINQAEISVLIVDDD-SKCNQIIDRAPRCLKKIISIREVRMATMQRARSRA 230
GP I+ + +L+V+ + D L + + ++
Sbjct: 105 LRGPQ-LEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAG---- 159
Query: 231 IEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI--AAISAA 288
+ +P D I YTSGTTG KGV H SA
Sbjct: 160 -----WSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAE 214
Query: 289 LLQLSDHRPKYSDVLISFLPLAH 311
L++ DVL + LPL H
Sbjct: 215 DLEIGA-----DDVLYTTLPLFH 232
|
Length = 542 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIA---AISAALLQLSDHRPKYSDVLISF-LPLA 310
D+ YTSGTTG PKGVM H + + A + LL L +S + F L
Sbjct: 90 ADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQPGDRIFSSSKLFFAYGLG 149
Query: 311 HMLERTCESAMF--LVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRM 360
+ L +F G S G + + + + +PT++ VP L +
Sbjct: 150 NSL-------LFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRAL 196
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 250 EVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRP 297
+P I +TSG+TG PKGVM+ AI LL + +H P
Sbjct: 592 LQLSQPHHTAYIIFTSGSTGRPKGVMVGQ----TAIVNRLLWMQNHYP 635
|
Length = 1296 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 8e-06
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 250 EVPPKPT----DLCTICYTSGTTGNPKGVMLTHGNVIAAISAAL-LQLSDHR-PKYSDVL 303
+ PKP D+ I Y+SGTTG KGV+LTH N+IA + + + S + P +V
Sbjct: 188 DFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVY 247
Query: 304 ISFLPLAHM 312
++ LP+ H+
Sbjct: 248 LAALPMFHI 256
|
Length = 560 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 8e-06
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 256 TDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH---- 311
D YTSGTTG PK +++H + A A+ DVL LPL H
Sbjct: 81 VDPAFYIYTSGTTGLPKAAIMSHRRWLRA--GAVFGGLGLLKP-DDVLYLCLPLYHSNAL 137
Query: 312 MLERTCESAMFLVGGSI 328
+ S+ G S+
Sbjct: 138 TV---GWSSALAAGASL 151
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 9e-06
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHM 312
P P D+ + YTSGTTG PKGVM T + + I +L DV++ P+AH
Sbjct: 192 PSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL---ELGGGDVILMASPMAHQ 248
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 9e-06
Identities = 21/71 (29%), Positives = 28/71 (39%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFII 182
+ + L LGV G VG+Y PE I Y + V L GPDA +
Sbjct: 15 ASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGPDAVEHRL 74
Query: 183 NQAEISVLIVD 193
+ VL+ D
Sbjct: 75 RDSGARVLVTD 85
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 249 EEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLP 308
E P L I YTSGTTG PKGV+L+ IAA AL + DVL+ LP
Sbjct: 123 PEPDPDAPAL--IVYTSGTTGPPKGVVLSR-RAIAADLDALAEAWQWTAD--DVLVHGLP 177
Query: 309 LAH 311
L H
Sbjct: 178 LFH 180
|
Length = 471 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 54/183 (29%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLG 174
Y + + F + L LGV G V PE + G + L+ G
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60
Query: 175 PDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234
P+ I DR ++ ++ +
Sbjct: 61 PEP-----------------------IRDR------------------LELGEAKVL--- 76
Query: 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD 294
+ +++E P+ D + +TSGTTG PKGV+ H V+A + A L D
Sbjct: 77 -------ITTPELYERTDPE--DPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVL-D 126
Query: 295 HRP 297
RP
Sbjct: 127 LRP 129
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAI 285
P DL + YTSG+TG PKGV + H N A +
Sbjct: 104 PDDLAYVIYTSGSTGRPKGVAIEHRNAAALL 134
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHML 313
P DL + YT GTTG KG MLTH N++A + A +++++ LPL H+
Sbjct: 204 VPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIF 263
Query: 314 ERTCESAMFL 323
T +F+
Sbjct: 264 ALTVNCLLFI 273
|
Length = 560 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 51/187 (27%), Positives = 68/187 (36%), Gaps = 39/187 (20%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQ-----GAYCYSMIIVAL 169
I Y + F + L LGV G V IY PE I GA I +
Sbjct: 79 ITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIGA-----IHSVV 133
Query: 170 YDTLGPDACAFIINQAEISVLIVDDDSKCN-------QIIDRAPRCLKKIISIREV---- 218
+ +A A IN A+ +LI D +I+D A L+K S+ +V
Sbjct: 134 FAGFSAEALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEA---LEKCPSVEKVIVVK 190
Query: 219 ---RMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKP---TDLCTICYTSGTTGNPK 272
M R D + + P+P D I YTSG+TG PK
Sbjct: 191 RTGGEVPMVEGRDVWWH----DLMAKASP-----YCEPEPMDAEDPLFILYTSGSTGKPK 241
Query: 273 GVMLTHG 279
GV+ T G
Sbjct: 242 GVVHTTG 248
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 45/204 (22%), Positives = 70/204 (34%), Gaps = 28/204 (13%)
Query: 110 RPYQWIHYNQALLRARNFGSGLLGLGVNPGSF-VGIYSQNCPEWIITEQGAYCYSMIIVA 168
R + W + L A + L+ L VG+ N PE + A ++V
Sbjct: 25 RTWTW---REVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLVG 81
Query: 169 LYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARS 228
L T A A I +A+ +L+ D + + + +
Sbjct: 82 LNTTRRGAALAADIRRADCQLLVTDAEHR--------------------PLLDGLDLPGV 121
Query: 229 RAIEIIRFDEIERVGAQKMFE-EVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA 287
R +++ E V A D + +TSGTTG PK V +HG + A
Sbjct: 122 RVLDVDTPAYAELVAAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRL-AFAGR 180
Query: 288 ALLQLSDHRPKYSDVLISFLPLAH 311
AL + DV +PL H
Sbjct: 181 ALTERFGLTR--DDVCYVSMPLFH 202
|
Length = 540 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 47/182 (25%), Positives = 66/182 (36%), Gaps = 28/182 (15%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLG 174
I Y + F + L LGV G V IY PE I I ++
Sbjct: 89 ITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFS 148
Query: 175 PDACAFIINQAEISVLIVDDDSK-------CNQIIDRA----PRCLKKIISIREVRMA-- 221
+A A IN A ++I D+ I+D A P ++ ++ +R R
Sbjct: 149 AEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVR--RTGNP 206
Query: 222 -TMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPT---DLCTICYTSGTTGNPKGVMLT 277
R D + + A P+P D I YTSG+TG PKGV+ T
Sbjct: 207 VPWVEGRDVWWH----DLMAKASA-----YCEPEPMDSEDPLFILYTSGSTGKPKGVLHT 257
Query: 278 HG 279
G
Sbjct: 258 TG 259
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 16/77 (20%)
Query: 252 PPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA---AISAALLQLSDHRPKYSDVLISFLP 308
P P D+ + Y+SG+T P+GV++TH ++A AIS L++ RP D +S+LP
Sbjct: 172 RPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKV---RP--GDRCVSWLP 226
Query: 309 LAHMLERTCESAMFLVG 325
H M LVG
Sbjct: 227 FYH--------DMGLVG 235
|
Length = 579 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 252 PPKPTDLCTICYTSGTTGNPKGVMLTH---GNVIAAISAAL--LQLSDHRPKYSDVLISF 306
P I YTSG+TG PKGV L+ V +++ A+ L+ H +
Sbjct: 108 VELPAGTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAILEPERH--------LCL 159
Query: 307 LPLAHMLER-TCESAMFLVGGSI 328
LPLA +LE A L+G ++
Sbjct: 160 LPLATLLENIAGVYAPLLMGATV 182
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
P D I +TSG+ G PKGV+L+H N++A + ++ D + + LP+ H
Sbjct: 790 RDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSP---EDKVFNALPVFH 845
|
Length = 1140 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 21/77 (27%), Positives = 35/77 (45%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + R +GLL LGV PG V + NCPE++ + V + L +
Sbjct: 6 YAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRGE 65
Query: 177 ACAFIINQAEISVLIVD 193
A I++ + +++VD
Sbjct: 66 ELAHILDHSGARLIVVD 82
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 5e-05
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 264 TSGTTGNPKGVMLTHGNVIAAISAALLQ----LSDHRPKYSDVLISFLPLAH 311
TSG+TG PK V+ TH + A L Q L++ P VL+ +LP H
Sbjct: 217 TSGSTGLPKAVINTHRM-LCANQQMLAQTFPFLAEEPP----VLVDWLPWNH 263
|
Length = 614 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 231 IEIIRFDEIERVGAQKMF--EEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI 282
I +I DE++ + A + K D I +TSGTTG PKGV ++H N++
Sbjct: 116 IPVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLV 169
|
Length = 503 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 8e-05
Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 56/192 (29%)
Query: 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIIT------EQGAYCYSMII 166
Q + Y + RA L GV P V I ++ E ++ GAY
Sbjct: 2027 QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAY------ 2080
Query: 167 VALYDTLGP-DACAFIINQAEISVLIVDDDSKCNQIIDRAP-----RCLKKIISIREVRM 220
V L D P + A+++ + ++L+ +++R P L
Sbjct: 2081 VPL-DPNYPAERLAYMLEDSGAALLLTQRH-----LLERLPLPAGVARL----------- 2123
Query: 221 ATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPK----PTDLCTICYTSGTTGNPKGVML 276
++R + + P +L + YTSG+TG PKGV +
Sbjct: 2124 -----------------PLDRDAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAV 2166
Query: 277 THGNVIAAISAA 288
+HG ++A AA
Sbjct: 2167 SHGALVAHCQAA 2178
|
Length = 5163 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 9e-05
Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 25/198 (12%)
Query: 121 LLR-ARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACA 179
L R + L G+ PG V + + E+++ A +++V L D P A
Sbjct: 49 LARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL-DPALPIAEQ 107
Query: 180 FIINQAE-ISVLIVDDDSKCNQIIDRAP---RCLKKIISIREVRMATMQRARSRAIEIIR 235
+ +QA V+++D D DRA R +++ + + +
Sbjct: 108 RVRSQAAGARVVLIDADGPH----DRAEPTTRWWPLTVNVGGDSGPS-----GGTLSVHL 158
Query: 236 FDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA--ALLQLS 293
E A E + P D I +T GTTG PK V TH N+ +++ A +LS
Sbjct: 159 DAATEPTPATSTPEGLRP---DDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLS 215
Query: 294 DHRPKYSDVLISFLPLAH 311
D ++ +PL H
Sbjct: 216 PR-----DATVAVMPLYH 228
|
Length = 534 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 50/220 (22%), Positives = 72/220 (32%), Gaps = 48/220 (21%)
Query: 99 GRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQG 158
WR++I A LRAR L P VG+ N PE+ +
Sbjct: 26 DSFTSWREHIRGSAAR----AAALRAR------LDPTRPP--HVGVLLDNTPEFSLLLGA 73
Query: 159 AYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREV 218
A ++ V L T A A I A+ +++ + L + + V
Sbjct: 74 AALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHA------ELLDGLDPGVRVINV 127
Query: 219 -------RMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNP 271
+A + A P DL + +TSGT+G+P
Sbjct: 128 DSPAWADELAAHRDAEPPFRV--------------------ADPDDLFMLIFTSGTSGDP 167
Query: 272 KGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
K V TH V A+ L Q P DV +PL H
Sbjct: 168 KAVRCTHRKV-ASAGVMLAQRFGLGP--DDVCYVSMPLFH 204
|
Length = 529 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 9e-05
Identities = 37/165 (22%), Positives = 56/165 (33%), Gaps = 27/165 (16%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPE-----WIITEQGAYCYSMIIVALYD 171
Y + R+ GL LG+ G V I +N PE W G Y +
Sbjct: 14 YGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLY-----YTPINW 68
Query: 172 TLGPDACAFIINQAEISVLIVDDD--SKCNQIIDRAPRCLKKIISIREVRMATMQRARSR 229
L A+I++ + VLIV ++ P + + +
Sbjct: 69 HLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGV-------PLLLVV------- 114
Query: 230 AIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGV 274
A + F E A + T + Y+SGTTG PKG+
Sbjct: 115 AGPVPGFRSYEEALAA-QPDTPIADETAGADMLYSSGTTGRPKGI 158
|
Length = 502 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 9e-05
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 263 YTSGTTGNPKGVMLTHGNVIA---AISAALLQLSDHRPKYSDVLISFLPLAH 311
YTSG+T P GVM++H NVIA + + + P ++S+LP H
Sbjct: 167 YTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYH 218
|
Length = 578 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 250 EVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA 287
V P +L + YTSG+TG PKG HG ++ + A
Sbjct: 1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCA 1749
|
Length = 3956 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 40/163 (24%), Positives = 59/163 (36%), Gaps = 14/163 (8%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFII 182
R L GV G V I N E++ + A I V + L P AF++
Sbjct: 51 RVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLV 110
Query: 183 NQAEISVLIVDD--DSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240
+ V++ + + D P L ++ S + D +
Sbjct: 111 SDCGAHVVVTEAALAPVATAVRDIVPL-LSTVVVAG---------GSSDDSVLGYEDLLA 160
Query: 241 RVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA 283
G ++P L I YTSGTTG PKG +LTH N+
Sbjct: 161 EAGPAHAPVDIPNDSPAL--IMYTSGTTGRPKGAVLTHANLTG 201
|
Length = 542 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 250 EVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPL 309
+V +P D I +TSG+ G+PKGV+ +H +++A + + ++D P D +S LPL
Sbjct: 359 QVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVE-QIKTIADFTPN--DRFMSALPL 415
Query: 310 AH 311
H
Sbjct: 416 FH 417
|
Length = 718 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 50/219 (22%), Positives = 75/219 (34%), Gaps = 39/219 (17%)
Query: 100 RCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159
R WR+ +R AL A L GV G + ++S+NC + + A
Sbjct: 31 RSWTWREIDARV-------DALAAA------LAARGVRKGDRILVHSRNCNQMFESMFAA 77
Query: 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVR 219
+ + V PD A++ + +I D + A VR
Sbjct: 78 FRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFP-----EHA----------AAVR 122
Query: 220 MATMQRARSRAIEIIRF----DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVM 275
A+ AI R + + D C +TSGTTG PK +
Sbjct: 123 AASPDLTHVVAIGGARAGLDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAV 182
Query: 276 LTHGN---VIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
LTHG VI A L+ + + D + PL+H
Sbjct: 183 LTHGQMAFVITNHLADLMPGTTEQ----DASLVVAPLSH 217
|
Length = 528 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 38/183 (20%), Positives = 58/183 (31%), Gaps = 55/183 (30%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLG 174
+ Y + ++ + L LGV PG V PE ++ + I V L+ G
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60
Query: 175 PDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234
P A + + + V++ + R
Sbjct: 61 PKAIEYRLGHSGAKVVVTNAA----------------------------NRG-------- 84
Query: 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD 294
+ D+ DL YTSGTTG PKGV + N +AA A + D
Sbjct: 85 KLDD------------------DLFAQMYTSGTTGLPKGVPVPL-NALAAFYAYMRYAID 125
Query: 295 HRP 297
R
Sbjct: 126 LRD 128
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 257 DLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDH--RPKYSDVLISFLPLA 310
D+ I +TSGTTG PKG M H +++A A H +P DV I PLA
Sbjct: 148 DVALIGFTSGTTGLPKGTMHFHRDILAICDA----FPRHVLQPTPDDVFIGSPPLA 199
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLE 314
YTSGTTG PK ++H V+ + +L L DV+ + LPL H
Sbjct: 141 IRSTALYIYTSGTTGLPKAARISHLRVLQC--SGMLSLCGVTAD--DVVYTTLPLYHS-- 194
Query: 315 RTCESAMFL-VGGSIG 329
S L + G IG
Sbjct: 195 ----SGALLGIVGCIG 206
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLS-DHRPKYSDVL 303
D + YTSGTTG PKG + H ++ + ++L + P+ DV
Sbjct: 87 SDDPAILIYTSGTTGPPKGALHGHRVLLGHL--PGVELYFELAPRPGDVF 134
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 21/86 (24%), Positives = 36/86 (41%)
Query: 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDT 172
Q + Y + A F + L LGV+PG V + + PE + + VAL
Sbjct: 9 QSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPL 68
Query: 173 LGPDACAFIINQAEISVLIVDDDSKC 198
L P I++ + ++L+ + D
Sbjct: 69 LTPQDLEHILDDSGAALLVTEADDIA 94
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 16/84 (19%), Positives = 37/84 (44%)
Query: 108 ISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIV 167
+ + + Y + R+ LL LG+ PG V + + E+++ + + V
Sbjct: 5 LVDGGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAV 64
Query: 168 ALYDTLGPDACAFIINQAEISVLI 191
L + A+I++ ++ S+L+
Sbjct: 65 PLNPSYPAAELAYILSDSQPSLLV 88
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 8e-04
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 19/81 (23%)
Query: 249 EEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI-AAISAALLQLSDHRPKYSDVLISFL 307
+PP+ L I +TSGT+G PKGVML+ N+ A + +L D SFL
Sbjct: 130 PSIPPERVSL--ILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHS-------SFL 180
Query: 308 PLAHMLERTCESAMFLVGGSI 328
C++ MF + G I
Sbjct: 181 ---------CDAPMFHIIGLI 192
|
Length = 488 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 31/154 (20%), Positives = 41/154 (26%), Gaps = 61/154 (39%)
Query: 126 NFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQA 185
+ L LGV G V + PE G + + LGP
Sbjct: 12 RAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGPKD-------- 63
Query: 186 EISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQ 245
I R ++RA +RAI
Sbjct: 64 ---------------IRYR------------------LERAGARAIVTS----------- 79
Query: 246 KMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHG 279
D + +TSGTTG PK V+ TH
Sbjct: 80 ---------ADDPALLYFTSGTTGLPKMVLHTHS 104
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.001
Identities = 34/185 (18%), Positives = 60/185 (32%), Gaps = 45/185 (24%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEW------IITEQGAYCYSMIIVALYDTLGPD 176
RA L+ GV P VG+ + E I+ GAY V L +
Sbjct: 545 RANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAY------VPLDPEYPAE 598
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
A+++ + + +L+ L + + + + ++++
Sbjct: 599 RLAYMLEDSGVQLLLSQ-------------SHLGRKLPL------------AAGVQVLDL 633
Query: 237 DEIERVGAQKMFEEVPPK----PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAAL--L 290
D + E P P +L + YTSG+TG PKG H + +
Sbjct: 634 DRPAAWLEG--YSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY 691
Query: 291 QLSDH 295
L
Sbjct: 692 GLGVG 696
|
Length = 5163 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 239 IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPK 298
+E PK D I +TSG+TG PKGV+ TH A I AL L R
Sbjct: 70 LEEAEPDAFIGI--PKADDPAAILFTSGSTGPPKGVVYTHRTFAAQID-ALRSLYGIREG 126
Query: 299 YSDVLIS-FLPLA 310
D ++ F P A
Sbjct: 127 --DRDLAAFPPFA 137
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 19/93 (20%)
Query: 224 QRARSRAIEIIRFDEI-ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTH---- 278
+R R +I D + + VGA + + + YTSG+T P GV +TH
Sbjct: 154 ERPR-----VIAVDAVPDEVGA--TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLP 206
Query: 279 GNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
NV+ I A Q D +S+LP H
Sbjct: 207 TNVLQVIDALEGQEGDRG-------VSWLPFFH 232
|
Length = 631 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 9/156 (5%)
Query: 123 RARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFII 182
RA GL LGV PG V + +N + A V + P+ A+I+
Sbjct: 20 RAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYIL 79
Query: 183 NQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIR---EVRMATMQRARSRAIEIIRFDEI 239
+ VLI D + + P + ++S+ E+ A D
Sbjct: 80 EDSGARVLIAHADL-LHGLASALPAGVT-VLSVPTPPEIAAAYRISPALLTPPAGAIDWE 137
Query: 240 ERVGAQKMFEEVP-PKPTDLCTICYTSGTTGNPKGV 274
+ Q+ ++ P P+P ++ YTSGTTG+PKGV
Sbjct: 138 GWLAQQEPYDGPPVPQPQ---SMIYTSGTTGHPKGV 170
|
Length = 509 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 261 ICYTSGTTGNPKGVMLTHGNVI 282
I YTSG+TGNPKGV ++H N++
Sbjct: 146 IIYTSGSTGNPKGVQISHDNLV 167
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 55/227 (24%), Positives = 86/227 (37%), Gaps = 37/227 (16%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMI------IVALY 170
Y + RA +GL LG+ PG V + N E+ IT ++++ ++AL
Sbjct: 56 YAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYIT-----FFALLRLGVAPVLALP 110
Query: 171 DTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRA 230
+ AF +Q E ++LIV A + K ++R V +A
Sbjct: 111 SHRASELGAFA-SQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAG-------- 161
Query: 231 IEIIRFDEIERVGAQKMFEEVPPKPTDLCTICY---TSGTTGNPKGVMLTHG----NVIA 283
E +E P P D + + + GTTG PK + TH +V A
Sbjct: 162 -EAEHPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRA 220
Query: 284 AISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM--FLVGGSI 328
SA + V + LP AH + A+ FL GG++
Sbjct: 221 --SAEICGFDQQ-----TVYLCALPAAHNFPLSSPGALGVFLAGGTV 260
|
Length = 542 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.002
Identities = 56/249 (22%), Positives = 94/249 (37%), Gaps = 37/249 (14%)
Query: 135 GVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDD 194
G+ G V + S N PE ++ A + I A+ L +I+ + VL+
Sbjct: 45 GLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLVA-- 102
Query: 195 DSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPK 254
+ +D K+ + +R++ EI F E A P
Sbjct: 103 ----SAALDGL---AAKVGADLPLRLSF-------GGEIDGFGSFEAALAGAG----PRL 144
Query: 255 PTDLC--TICYTSGTTGNPKGV--------MLTHGNVIAAISAALLQLSDHRPKYSDVLI 304
C + Y+SGTTG PKG+ + G+ I AI+ A +S+ SD+
Sbjct: 145 TEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISE-----SDIYY 199
Query: 305 SFLPLAHMLE-RTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDK 363
S P+ H R C L G + D + ++ + T+ VP + R+ K
Sbjct: 200 SSAPIYHAAPLRWCSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLL-K 258
Query: 364 VMAQIRPSF 372
+ A +R +
Sbjct: 259 LDADVRTRY 267
|
Length = 501 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.002
Identities = 45/209 (21%), Positives = 79/209 (37%), Gaps = 24/209 (11%)
Query: 109 SRPYQWIHY--NQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMII 166
+ + RAR GL LGV G V N + ++
Sbjct: 17 LHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVL 76
Query: 167 VALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRA 226
L P A+I+N AE VL+ D + ++ + E ++
Sbjct: 77 HTANPRLSPKEIAYILNHAEDKVLLFDPN----------------LLPLVEAIRGELKTV 120
Query: 227 RSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLC---TICYTSGTTGNPKGVMLTH-GNVI 282
+ + + E + + EE P + YT+GTTG PKGV+ +H V+
Sbjct: 121 QHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVL 180
Query: 283 AAISAALLQLSDHRPKYSDVLISFLPLAH 311
+++A+L+ + K DV++ +P+ H
Sbjct: 181 HSLAASLVDGTALSEK--DVVLPVVPMFH 207
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 250 EVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA 287
V P +L + YTSG+TG PKGV ++HG+++ + A
Sbjct: 4688 AVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHA 4725
|
Length = 5163 |
| >gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 227 RSRAIEIIRFDEI-ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTH----GNV 281
R R +I D I + G F V D+ + YTSG+T P GV +TH N+
Sbjct: 165 RLRRPRVIAIDAIPDSAGE--SFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNL 222
Query: 282 IAAI-SAALLQLSDHRPKYSDVLISFLPLAH 311
+ I S LL + H +S+LPL H
Sbjct: 223 VQMILSIDLLDRNTHG-------VSWLPLYH 246
|
Length = 612 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 54/250 (21%), Positives = 92/250 (36%), Gaps = 19/250 (7%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDT-LGP 175
Y + ++ GLL LGV G V + ++N + A + L +T
Sbjct: 77 YAELDEQSNALARGLLALGVRAGDGVAVLARN-HRGFVLALYAAGKVGARIILLNTGFSG 135
Query: 176 DACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIR 235
A + + + L+ DD+ ++ P L ++ +
Sbjct: 136 PQLAEVAAREGVKALVYDDEF--TDLLSALPPDLGRLRAWGGNPDDD----EPSGSTDET 189
Query: 236 FDE-IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD 294
D+ I + PPKP + + TSGTTG PKG + +A + A LL
Sbjct: 190 LDDLIAGSSTAPL--PKPPKPGGI--VILTSGTTGTPKGAPRPEPSPLAPL-AGLL---S 241
Query: 295 HRP-KYSDVLISFLPLAHMLERTCES-AMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPA 352
P + + + P+ H + AM L + D + ED+ K T +
Sbjct: 242 RVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVV 301
Query: 353 VPRLLNRMYD 362
VP +L+R+ D
Sbjct: 302 VPVMLSRILD 311
|
Length = 549 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 264 TSGTTGNPKGVMLTHGNVIAAISA 287
TSGTTG PKG MLT + A+ A
Sbjct: 43 TSGTTGTPKGAMLTAAALTASADA 66
|
Length = 358 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 391 | |||
| KOG1256|consensus | 691 | 100.0 | ||
| KOG1180|consensus | 678 | 100.0 | ||
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| KOG1177|consensus | 596 | 100.0 | ||
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| KOG1176|consensus | 537 | 100.0 | ||
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1179|consensus | 649 | 100.0 | ||
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 99.98 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 99.97 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 99.97 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 99.97 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 99.97 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 99.97 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.96 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 99.96 | |
| KOG1175|consensus | 626 | 99.96 | ||
| KOG3628|consensus | 1363 | 99.83 | ||
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.65 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.62 | |
| KOG1178|consensus | 1032 | 99.55 | ||
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.4 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.24 | |
| KOG3628|consensus | 1363 | 99.17 | ||
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 98.52 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 97.27 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 95.05 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 90.22 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 85.99 | |
| PF13745 | 91 | HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A. | 85.87 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 84.07 | |
| TIGR03590 | 279 | PseG pseudaminic acid biosynthesis-associated prot | 83.97 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 80.06 |
| >KOG1256|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-52 Score=400.87 Aligned_cols=319 Identities=44% Similarity=0.772 Sum_probs=285.5
Q ss_pred CCcceeccCCCCCHHHHHHHHHHhcCCCceEEEeec--CCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCC
Q psy2417 72 GKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQN--ISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNC 149 (391)
Q Consensus 72 ~~~~~~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~--~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s 149 (391)
.+....+.+...|+++.|++.+..+|+.++++++.. ..++|+|+||+|+.+++..++.+|+.+|+++++.|||++.|+
T Consensus 64 ~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~ 143 (691)
T KOG1256|consen 64 EELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNR 143 (691)
T ss_pred CCCCCCCCCCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCC
Confidence 444455667889999999999999999999999874 357799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc----CccEEEEecCcchHHHHH
Q psy2417 150 PEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR----CLKKIISIREVRMATMQR 225 (391)
Q Consensus 150 ~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~----~l~~ii~~~~~~~~~~~~ 225 (391)
+||+++.+||..+|++.||||.+++++.+.+|++++++.++|++.+.+...+++.... .++.+|.++...+.....
T Consensus 144 pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~ 223 (691)
T KOG1256|consen 144 PEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEK 223 (691)
T ss_pred hhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhh
Confidence 9999999999999999999999999999999999999999999988778888876553 689999999999888888
Q ss_pred HhhCCceEEeHHHHHHhhhccCCCC-CCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhc---CCCCCCCC
Q psy2417 226 ARSRAIEIIRFDEIERVGAQKMFEE-VPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLS---DHRPKYSD 301 (391)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~---~~~~~~~d 301 (391)
....++.+++|+++++.|......+ .++.|+|+|.|+|||||||+|||||+||+|+++.+........ ......+|
T Consensus 224 ~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~d 303 (691)
T KOG1256|consen 224 AENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDD 303 (691)
T ss_pred hhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCc
Confidence 8888999999999999998766555 5889999999999999999999999999999997654332221 11234479
Q ss_pred EEEEcCChHHHHHHHHHHHHHHhCcEEEEeCCCHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchh-HHHHHHHH
Q psy2417 302 VLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSF-IKRLMFNM 380 (391)
Q Consensus 302 ~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~s-lr~~~~gg 380 (391)
++++++||+|++++......+..|++++|.++|+..+.+++++.+||++.+||++|+++++.+.+..+.++ +|+.++..
T Consensus 304 v~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~ 383 (691)
T KOG1256|consen 304 VYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNF 383 (691)
T ss_pred eEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999888777665 99999999
Q ss_pred HHHHHH-Hhhh
Q psy2417 381 AMGSKE-NEIK 390 (391)
Q Consensus 381 a~~~k~-~~~~ 390 (391)
|+.+|. .+++
T Consensus 384 A~~~k~~~~~~ 394 (691)
T KOG1256|consen 384 AMAYKLEHRLM 394 (691)
T ss_pred HHHHHHHHHhh
Confidence 999999 5443
|
|
| >KOG1180|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-46 Score=344.88 Aligned_cols=326 Identities=33% Similarity=0.573 Sum_probs=281.6
Q ss_pred CccCcccccCC-CCCcceeccCCCCCHHHHHHHHHHhcCCCceEEEeecC--------C---------CCceEEeHHHHH
Q psy2417 60 VRVSKFFSGAS-EGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNI--------S---------RPYQWIHYNQAL 121 (391)
Q Consensus 60 ~~~~~~~~~~~-~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~--------~---------~~~~~~Ty~el~ 121 (391)
..++..+|++. .+++...+.+...|++++|++.++++.++.++++++-. + ++|.|+||.|+.
T Consensus 17 ~~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~ 96 (678)
T KOG1180|consen 17 EHETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVY 96 (678)
T ss_pred CCCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHH
Confidence 35566678775 56688888899999999999999999999999987531 1 579999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCe-EEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhH
Q psy2417 122 LRARNFGSGLLGLGVNPGSF-VGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQ 200 (391)
Q Consensus 122 ~~~~~la~~L~~~gv~~g~~-V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 200 (391)
+++.++|++|.+.|++|+++ |+|+++.+.+|+++++||++.+..+|.++.+++.+.+.+-|++++++.+||+.+. +..
T Consensus 97 ~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~L-L~k 175 (678)
T KOG1180|consen 97 ERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSEL-LPK 175 (678)
T ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHH-HHH
Confidence 99999999999999998765 9999999999999999999999999999999999999999999999999999963 455
Q ss_pred HHhhccc--CccEEEEecCcch----HHHHHHhhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEE
Q psy2417 201 IIDRAPR--CLKKIISIREVRM----ATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGV 274 (391)
Q Consensus 201 ~~~~~~~--~l~~ii~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV 274 (391)
+...+.. .++.||.+++.+. .........++.++++++++..++....++.++.++|+|.|||||||||.||||
T Consensus 176 l~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGV 255 (678)
T KOG1180|consen 176 LKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGV 255 (678)
T ss_pred HHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceE
Confidence 5544333 8999999995332 222222345789999999999999987777788999999999999999999999
Q ss_pred EeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCCCHHhHHH-----------HHH
Q psy2417 275 MLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTE-----------DMK 343 (391)
Q Consensus 275 ~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~~~~~l~~-----------~i~ 343 (391)
+++|+|+++.+......... +++.|+++.++||+|++++...+.+++.|+++...+. .+|.+ ++.
T Consensus 256 ml~H~NiVA~~~G~~~~v~~--lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~--~TLtdts~ki~kg~kGD~~ 331 (678)
T KOG1180|consen 256 MLTHSNIVAGVTGVGENVPE--LGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSP--LTLTDTSSKIKKGCKGDLT 331 (678)
T ss_pred EEecccHHhhhhhhcccCcc--cCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCc--ceecccchhhccCCcCccc
Confidence 99999999999888877642 8999999999999999999999999999999998643 22222 577
Q ss_pred hcCCcEEecChHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhh
Q psy2417 344 TLKPTIMPAVPRLLNRMYDKVMAQIR-PSFIKRLMFNMAMGSKENEIK 390 (391)
Q Consensus 344 ~~~~t~~~~~P~~l~~l~~~~~~~~~-~~slr~~~~gga~~~k~~~~~ 390 (391)
..+||+|.+||++|.++.+.+..+.+ .+.++.-+|..+|.+|..+++
T Consensus 332 ~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~ 379 (678)
T KOG1180|consen 332 ELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIE 379 (678)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999998777664 679999999999999998876
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=357.66 Aligned_cols=324 Identities=32% Similarity=0.604 Sum_probs=245.6
Q ss_pred CccCcccccCCC-CCcceeccCCCCCHHHHHHHHHHhcCCCceEEEeec---CCCCceEEeHHHHHHHHHHHHHHHHhCC
Q psy2417 60 VRVSKFFSGASE-GKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQN---ISRPYQWIHYNQALLRARNFGSGLLGLG 135 (391)
Q Consensus 60 ~~~~~~~~~~~~-~~~~~~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~---~~~~~~~~Ty~el~~~~~~la~~L~~~g 135 (391)
+.+++.+|+... ..+ ..+.+...|+.++|+++++++||++|+.+.+. ..+.++++||+||+++++++|++|+++|
T Consensus 22 ~~~~~~~~~~~~~~~~-~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~G 100 (666)
T PLN02614 22 PSVGPVYRSIFAKDGF-PNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVG 100 (666)
T ss_pred CCCCCcccCccccccc-CCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcC
Confidence 444555554322 222 12344566999999999999999999986431 1134678999999999999999999999
Q ss_pred CCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc---CccEE
Q psy2417 136 VNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR---CLKKI 212 (391)
Q Consensus 136 v~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~---~l~~i 212 (391)
+++|++|+|+++|++||++++|||+++|+++||+++.++.+++.+++++++++++|++.+. ...+....+. .++.+
T Consensus 101 v~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~-~~~~~~~~~~~~~~l~~v 179 (666)
T PLN02614 101 VKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKK-ISELFKTCPNSTEYMKTV 179 (666)
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHH-HHHHHHhcccccccceEE
Confidence 9999999999999999999999999999999999999999999999999999999998742 3344333321 36677
Q ss_pred EEecCcchHHHHHHhhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhh
Q psy2417 213 ISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQL 292 (391)
Q Consensus 213 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~ 292 (391)
+.++.............++.+.+++++...+...........++|+++|+|||||||.||||++||+|+++.+......+
T Consensus 180 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~ 259 (666)
T PLN02614 180 VSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLL 259 (666)
T ss_pred EEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhc
Confidence 77764322111111122445678888776543221112234679999999999999999999999999998877655543
Q ss_pred cC--CCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCCCHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcC-
Q psy2417 293 SD--HRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIR- 369 (391)
Q Consensus 293 ~~--~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~- 369 (391)
.. ..+.++|++++++|++|++++...+..++.|+++++.+.++..+++.|++++||+++++|++|+++++.......
T Consensus 260 ~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~ 339 (666)
T PLN02614 260 KSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSD 339 (666)
T ss_pred cccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhc
Confidence 10 016789999999999999999766777899999999877999999999999999999999999999876443322
Q ss_pred chhHHHHHHHHHHHHH
Q psy2417 370 PSFIKRLMFNMAMGSK 385 (391)
Q Consensus 370 ~~slr~~~~gga~~~k 385 (391)
.+.++..++..+...|
T Consensus 340 ~~~~~~~~~~~a~~~~ 355 (666)
T PLN02614 340 GGFLKKFVFDSAFSYK 355 (666)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 2245555666555544
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=354.63 Aligned_cols=326 Identities=35% Similarity=0.611 Sum_probs=251.8
Q ss_pred CccCcccccCCC-CCcceeccCCCCCHHHHHHHHHHhcCCCceEEEee---cCCCCceEEeHHHHHHHHHHHHHHHHhCC
Q psy2417 60 VRVSKFFSGASE-GKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQ---NISRPYQWIHYNQALLRARNFGSGLLGLG 135 (391)
Q Consensus 60 ~~~~~~~~~~~~-~~~~~~~~~~~~tl~~~l~~~~~~~pd~~al~~~~---~~~~~~~~~Ty~el~~~~~~la~~L~~~g 135 (391)
+.+++.||+... +.+... .+...|++++|++.++++|+++|+.+.. ...++++++||+||.++++++|++|.++|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~-~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~G 98 (660)
T PLN02861 20 PSAGPVYRSIYAKDGLLDL-PADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRG 98 (660)
T ss_pred CCCCCcccccccccccccC-CCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcC
Confidence 555666665432 223222 3456799999999999999999998642 11245678999999999999999999999
Q ss_pred CCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcc---cCccEE
Q psy2417 136 VNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAP---RCLKKI 212 (391)
Q Consensus 136 v~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~---~~l~~i 212 (391)
+++|++|+|+++|++||++++|||+++|+++||+++.++.+++.+++++++++++|++... ...+..... ..++.+
T Consensus 99 v~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~-~~~~~~~~~~~~~~l~~i 177 (660)
T PLN02861 99 VNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESK-ISSILSCLPKCSSNLKTI 177 (660)
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHH-HHHHHHhhhhCCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999999999997642 333333222 246778
Q ss_pred EEecCcchHHHHHHhhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhh
Q psy2417 213 ISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQL 292 (391)
Q Consensus 213 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~ 292 (391)
+.++.............+....+|+++...+... ....+..++|+++|+|||||||.||||++||+|+++.+......+
T Consensus 178 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~ 256 (660)
T PLN02861 178 VSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLL 256 (660)
T ss_pred EEECCCChhhhhhhhcCCcEEEEHHHHHHhCccc-CCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhcc
Confidence 8876543221111112234567888877644321 112234689999999999999999999999999998877665543
Q ss_pred cC--CCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCCCHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcC-
Q psy2417 293 SD--HRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIR- 369 (391)
Q Consensus 293 ~~--~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~- 369 (391)
.. ..+.++|++++++|++|++++...+.+++.|+++++.+.++..+++.|++++||+++++|++|+.+++....+..
T Consensus 257 ~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~ 336 (660)
T PLN02861 257 KVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISS 336 (660)
T ss_pred ccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhc
Confidence 21 014678999999999999998877778999999999877999999999999999999999999999886544433
Q ss_pred chhHHHHHHHHHHHHHHHh
Q psy2417 370 PSFIKRLMFNMAMGSKENE 388 (391)
Q Consensus 370 ~~slr~~~~gga~~~k~~~ 388 (391)
...++..++..+...|..+
T Consensus 337 ~~~~~~~l~~~a~~~~~~~ 355 (660)
T PLN02861 337 GGMLRKKLFDFAYNYKLGN 355 (660)
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 3366777777776655443
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=352.10 Aligned_cols=330 Identities=35% Similarity=0.620 Sum_probs=257.2
Q ss_pred CccCcccccCCCCCcceeccCCCCCHHHHHHHHHHhcCCCceEEEeec---CCCCceEEeHHHHHHHHHHHHHHHHhCCC
Q psy2417 60 VRVSKFFSGASEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQN---ISRPYQWIHYNQALLRARNFGSGLLGLGV 136 (391)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~---~~~~~~~~Ty~el~~~~~~la~~L~~~gv 136 (391)
+.+++.||+....+-.....+...|+.++|++.++++|+++|+.+... ..++++++||+|+.++++++|.+|.++|+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv 98 (660)
T PLN02430 19 PSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGA 98 (660)
T ss_pred CCCCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCC
Confidence 446666776432221122335678999999999999999999987531 12356789999999999999999999999
Q ss_pred CCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcc--cCccEEEE
Q psy2417 137 NPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAP--RCLKKIIS 214 (391)
Q Consensus 137 ~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~--~~l~~ii~ 214 (391)
++|++|+|+++|++||+++++||+++|+++||++++++++++.+++++++++++|++.......+..... ..++.+|.
T Consensus 99 ~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~ 178 (660)
T PLN02430 99 EPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVS 178 (660)
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999987532222211111 15677888
Q ss_pred ecCcchHHHHHHhhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcC
Q psy2417 215 IREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD 294 (391)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~ 294 (391)
++.............++...+|+++...+........+..++|+++|+|||||||.||||++||+|++..+.........
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~ 258 (660)
T PLN02430 179 FTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQ 258 (660)
T ss_pred ECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccc
Confidence 86543221111122345677899987766433322334568999999999999999999999999999887765433211
Q ss_pred --CCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCCCHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhc-Cch
Q psy2417 295 --HRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQI-RPS 371 (391)
Q Consensus 295 --~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~-~~~ 371 (391)
..+.++|++++++|++|.+++...+.++..|+++++...++..+++.+++++||++.++|.+|+++++...... ..+
T Consensus 259 ~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~ 338 (660)
T PLN02430 259 FEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELN 338 (660)
T ss_pred cccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccC
Confidence 02678999999999999999987777899999999887789999999999999999999999999998755443 345
Q ss_pred hHHHHHHHHHHHHHHHhh
Q psy2417 372 FIKRLMFNMAMGSKENEI 389 (391)
Q Consensus 372 slr~~~~gga~~~k~~~~ 389 (391)
.++..++..+...|..++
T Consensus 339 ~~~~~~~~~~~~~~~~~~ 356 (660)
T PLN02430 339 PRRRLIFNALYKYKLAWM 356 (660)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677778888877776544
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=354.86 Aligned_cols=326 Identities=22% Similarity=0.393 Sum_probs=250.0
Q ss_pred CCccCccCcccccCCCCCcceeccCCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHh--
Q psy2417 56 GREVVRVSKFFSGASEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLG-- 133 (391)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-- 133 (391)
......++..||..+...- .+.....|+.++|.+.++.+|+++|+.+... +..++++||+|+.++++++|++|.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~p~~~Al~~~~~-g~~~~~~Ty~el~~~v~~~A~~L~~~~ 112 (746)
T PTZ00342 36 KATNENESSVYCMKDHKKK--SSLYVYKHIMKLLLEKYKLNNNKIAIVEHSC-GEPQNYITYGNFFKKVLSFSHSLNTYE 112 (746)
T ss_pred CCCCCCCCCceecCchhhc--ccccccchHHHHHHHHHhhcCCceeEeccCC-CCCceeeeHHHHHHHHHHHHHHHHHHh
Confidence 3444566667875432222 3444577999999999999999999986431 2346899999999999999999997
Q ss_pred -CCCCCC-----------CeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHH
Q psy2417 134 -LGVNPG-----------SFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQI 201 (391)
Q Consensus 134 -~gv~~g-----------~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 201 (391)
+|+++| ++|+|+++|++||+++++||+++|++.||++++++.+++.++|++++++++|++.+ ..+.+
T Consensus 113 ~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~-~~~~l 191 (746)
T PTZ00342 113 GKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLD-LVEGL 191 (746)
T ss_pred hcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHH-HHHHH
Confidence 499998 89999999999999999999999999999999999999999999999999999754 24444
Q ss_pred Hhhccc--CccEEEEecCcchH---------------------------------------------------------H
Q psy2417 202 IDRAPR--CLKKIISIREVRMA---------------------------------------------------------T 222 (391)
Q Consensus 202 ~~~~~~--~l~~ii~~~~~~~~---------------------------------------------------------~ 222 (391)
.+.... .++.+|.++..... .
T Consensus 192 ~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 271 (746)
T PTZ00342 192 LERKNELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDL 271 (746)
T ss_pred HHhhccCCCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHH
Confidence 433221 67888888752110 0
Q ss_pred HHHHhhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCE
Q psy2417 223 MQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDV 302 (391)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~ 302 (391)
.......++.+..|+++...... .....+..++|+|+|+|||||||.||||++||+|+++.+......... .....|+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~-~~~~~d~ 349 (746)
T PTZ00342 272 KEKAKKLGISIILFDDMTKNKTT-NYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIF-KKYNPKT 349 (746)
T ss_pred HHHhhcCCCEEEEHHHHHhhccc-CCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccc-cCCCCCe
Confidence 00011123445566666543221 112234568999999999999999999999999999987665432110 0235689
Q ss_pred EEEcCChHHHHHHHHHHHHHHhCcEEEEeCCCHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcC-chhHHHHHHHHH
Q psy2417 303 LISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIR-PSFIKRLMFNMA 381 (391)
Q Consensus 303 ~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~-~~slr~~~~gga 381 (391)
+++++|++|++++...+.+++.|+++++.+.++..++++|++++||+++++|.+|+++++.+..+.. .+.++..++..+
T Consensus 350 ~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a 429 (746)
T PTZ00342 350 HLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKI 429 (746)
T ss_pred EEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 9999999999999877889999999999877999999999999999999999999999987554433 346777777777
Q ss_pred HHHHHH
Q psy2417 382 MGSKEN 387 (391)
Q Consensus 382 ~~~k~~ 387 (391)
+..|..
T Consensus 430 ~~~~~~ 435 (746)
T PTZ00342 430 LSLRKS 435 (746)
T ss_pred HHHHHH
Confidence 766544
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=348.89 Aligned_cols=322 Identities=35% Similarity=0.600 Sum_probs=250.9
Q ss_pred cCccCcccccCCCC-Cccee--ccCCCCCHHHHHHHHHHhcCCCceEEEee---cCCCCceEEeHHHHHHHHHHHHHHHH
Q psy2417 59 VVRVSKFFSGASEG-KFLST--LYDDVKTLYDAFRKGAKESNNGRCLGWRQ---NISRPYQWIHYNQALLRARNFGSGLL 132 (391)
Q Consensus 59 ~~~~~~~~~~~~~~-~~~~~--~~~~~~tl~~~l~~~~~~~pd~~al~~~~---~~~~~~~~~Ty~el~~~~~~la~~L~ 132 (391)
.......||+...+ ++... ..+...|++++|++.++++|+++|+.+.. ...+.++++||+||+++++++|++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~ 96 (651)
T PLN02736 17 QTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLV 96 (651)
T ss_pred CCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHH
Confidence 34455556654322 33222 23445799999999999999999997532 11234688999999999999999999
Q ss_pred hCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--Ccc
Q psy2417 133 GLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLK 210 (391)
Q Consensus 133 ~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~ 210 (391)
++|+++|++|+|+++|++||+++++||+++|+++||+++.++.+++.+++++++++++|++.+. ...+...... .++
T Consensus 97 ~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~ 175 (651)
T PLN02736 97 QHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQT-LNTLLSCLSEIPSVR 175 (651)
T ss_pred HhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHH-HHHHHHHhhcCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999998642 3333322221 567
Q ss_pred EEEEecCcchHHHHHHhhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHH
Q psy2417 211 KIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALL 290 (391)
Q Consensus 211 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~ 290 (391)
.++.++.............++....|+++...+...........++|+++|+|||||||.||||++||+|+++.+.....
T Consensus 176 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~ 255 (651)
T PLN02736 176 LIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSL 255 (651)
T ss_pred EEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHh
Confidence 77776543221111112234567789888765433222233457899999999999999999999999999999888877
Q ss_pred hhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCCCHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcC-
Q psy2417 291 QLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIR- 369 (391)
Q Consensus 291 ~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~- 369 (391)
.++ +.++|++++++|++|++++...+.+|+.|+++++.+.++..+++.|++++||+++++|++++.+.+.......
T Consensus 256 ~~~---~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~ 332 (651)
T PLN02736 256 STK---FYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKE 332 (651)
T ss_pred ccC---CCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhc
Confidence 776 8899999999999999999877889999999999888899999999999999999999999999887443332
Q ss_pred chhHHHHHHHHHHHH
Q psy2417 370 PSFIKRLMFNMAMGS 384 (391)
Q Consensus 370 ~~slr~~~~gga~~~ 384 (391)
.+.++..++..++..
T Consensus 333 ~~~~~~~~~~~~~~~ 347 (651)
T PLN02736 333 SGGLKERLFNAAYNA 347 (651)
T ss_pred ccHHHHHHHHHHHHH
Confidence 235555555554443
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=348.00 Aligned_cols=319 Identities=33% Similarity=0.574 Sum_probs=250.8
Q ss_pred cccCCCCCcceeccCCCCCHHHHHHHHHHhcCCCceEEEeec-----------------CCCCceEEeHHHHHHHHHHHH
Q psy2417 66 FSGASEGKFLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQN-----------------ISRPYQWIHYNQALLRARNFG 128 (391)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~-----------------~~~~~~~~Ty~el~~~~~~la 128 (391)
||+.....+...+.+...|+.++|++.++.+||++|+.++.. ..++++++||+|++++++++|
T Consensus 41 ~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA 120 (696)
T PLN02387 41 IRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFA 120 (696)
T ss_pred eecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHH
Confidence 777655455555556778999999999999999999976410 114578899999999999999
Q ss_pred HHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc-
Q psy2417 129 SGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR- 207 (391)
Q Consensus 129 ~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~- 207 (391)
++|.++|+++|++|+|+++|++||+++++||+++|+++||++++++++++.++|++++++++|++.+. ...+.+....
T Consensus 121 ~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~-~~~l~~~~~~~ 199 (696)
T PLN02387 121 SGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQ-LKKLIDISSQL 199 (696)
T ss_pred HHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHH-HHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999998642 4444332221
Q ss_pred -CccEEEEecCcchHHHH-HHhhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHH
Q psy2417 208 -CLKKIISIREVRMATMQ-RARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAI 285 (391)
Q Consensus 208 -~l~~ii~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~ 285 (391)
.++.+|.+++....... .....++.+..|+++...+......+..+.++|+++|+|||||||.||||++||+|+++.+
T Consensus 200 ~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~ 279 (696)
T PLN02387 200 ETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATV 279 (696)
T ss_pred CCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHH
Confidence 67888888764322111 0122345677899888766543323344578999999999999999999999999999988
Q ss_pred HHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC----C-----HHhHHHHHHhcCCcEEecChHH
Q psy2417 286 SAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG----D-----IKNLTEDMKTLKPTIMPAVPRL 356 (391)
Q Consensus 286 ~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~----~-----~~~l~~~i~~~~~t~~~~~P~~ 356 (391)
......+.. +.++|++++++|++|++++...+..+..|+++.+... + +..+++.+++++||+++++|++
T Consensus 280 ~~~~~~~~~--~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~ 357 (696)
T PLN02387 280 AGVMTVVPK--LGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAI 357 (696)
T ss_pred HHHHhhcCC--CCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHH
Confidence 776654321 7889999999999999999888778889999887432 1 2345678999999999999999
Q ss_pred HHHHHHHHHHhc-CchhHHHHHHHHHHHHHHH
Q psy2417 357 LNRMYDKVMAQI-RPSFIKRLMFNMAMGSKEN 387 (391)
Q Consensus 357 l~~l~~~~~~~~-~~~slr~~~~gga~~~k~~ 387 (391)
++++.+...... ..+.++..++..++..|..
T Consensus 358 l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~ 389 (696)
T PLN02387 358 LDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLA 389 (696)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 999988754443 2346666777777666554
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=330.92 Aligned_cols=300 Identities=31% Similarity=0.522 Sum_probs=229.3
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
...++...+.++++.+|+.+++.+.. .+.++.+||+|+.+++.++|.+|+..|+.+||+|+|++.|+++|+++.+||+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~ 91 (613)
T COG1022 14 EIHTLPKRLAERVKDRPDGVALMYKE--LGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAIL 91 (613)
T ss_pred hcccHHHHHHHHhhcCCcceeEeeec--CCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 35688999999999999988888766 5778999999999999999999999999779999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecC----cch-HHHHHHhhCCceE
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIRE----VRM-ATMQRARSRAIEI 233 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~----~~~-~~~~~~~~~~~~~ 233 (391)
.+|++.||++++.+++++.++|++++++++|++.......+...... .+..++.... ... .............
T Consensus 92 ~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (613)
T COG1022 92 ALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGI 171 (613)
T ss_pred HcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccc
Confidence 99999999999999999999999999999999986533333322221 0111111100 000 0000000000111
Q ss_pred EeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHH
Q psy2417 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHML 313 (391)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 313 (391)
..+ .+... .......++.++|+|.|+|||||||.|||||+||+|+++++........ ..+++|++++++|++|++
T Consensus 172 ~~~-~~~~~--~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~--~~~~~d~~LsfLPlaHi~ 246 (613)
T COG1022 172 SLF-LIDSA--GLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLP--PIGPGDRVLSFLPLAHIF 246 (613)
T ss_pred hhh-hhccc--ccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCC--CCCCCcEEEEeCcHHHHH
Confidence 111 11111 1111224678999999999999999999999999999999999988874 278999999999999999
Q ss_pred HHHHHHHHHHhCcEEEEeCCCHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHH
Q psy2417 314 ERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPS-FIKRLMFNMAMGSKEN 387 (391)
Q Consensus 314 g~~~~~~~L~~G~~vv~~~~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~-slr~~~~gga~~~k~~ 387 (391)
++.+.......|+..++...++..+.+++++++||++++||++|+++.+.+.++.+.+ -.+..+|.+++..+.+
T Consensus 247 Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~ 321 (613)
T COG1022 247 ERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYK 321 (613)
T ss_pred HHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 9998643334444444445689999999999999999999999999999988777654 4566788888876643
|
|
| >KOG1177|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=311.40 Aligned_cols=290 Identities=19% Similarity=0.271 Sum_probs=248.1
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
...|+.++++-.+++-||+.|+++... ...+||+|+.+.++.+|.+|..+|+++||+|+++.||+.+|+.++|||+
T Consensus 48 ~~~Tigq~l~~~t~~v~dkea~Vf~~e----g~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A 123 (596)
T KOG1177|consen 48 DSETIGQLLETTTERVPDKEAAVFDHE----GIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACA 123 (596)
T ss_pred ccccHHHHHHHHhhccCcceEEEEeec----cchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHH
Confidence 467999999999999999999887652 2569999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcch----hHHHhhccc---------------CccEEEEecCcchH
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKC----NQIIDRAPR---------------CLKKIISIREVRMA 221 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~----~~~~~~~~~---------------~l~~ii~~~~~~~~ 221 (391)
++|.+.|+++|.|..+++++.|+..+++++|+....+. +.+++.+++ .+.++|..+++.+
T Consensus 124 ~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~- 202 (596)
T KOG1177|consen 124 RAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHP- 202 (596)
T ss_pred HhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCc-
Confidence 99999999999999999999999999999999876322 223333322 3556777663321
Q ss_pred HHHHHhhCCceEEeHHHHHHhhhccCCCC-----CCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCC
Q psy2417 222 TMQRARSRAIEIIRFDEIERVGAQKMFEE-----VPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHR 296 (391)
Q Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 296 (391)
-.+-+.++|+...+....... ....|+|++.|.|||||||.|||+.+||.|++++........+
T Consensus 203 --------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g--- 271 (596)
T KOG1177|consen 203 --------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAG--- 271 (596)
T ss_pred --------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhC---
Confidence 224567777776554422111 2346899999999999999999999999999999999999988
Q ss_pred CCCCCEEEEcCChHHHHHHHHH-HHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHH-HHHhcCchh
Q psy2417 297 PKYSDVLISFLPLAHMLERTCE-SAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK-VMAQIRPSF 372 (391)
Q Consensus 297 ~~~~d~~l~~~pl~h~~g~~~~-~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~-~~~~~~~~s 372 (391)
++.+++++...||+|++|.... +.+|..|+|++|+.. ++.+.++.|+++++|.++.+|+++..|++. ...++++++
T Consensus 272 ~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~ 351 (596)
T KOG1177|consen 272 YNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSS 351 (596)
T ss_pred cCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhh
Confidence 8889999999999999997777 899999999999765 999999999999999999999999999987 568889999
Q ss_pred HHHHHHHHHHHHHH
Q psy2417 373 IKRLMFNMAMGSKE 386 (391)
Q Consensus 373 lr~~~~gga~~~k~ 386 (391)
+|..+.||++.+++
T Consensus 352 lr~~vigGa~~s~e 365 (596)
T KOG1177|consen 352 LRKGVIGGAPVSPE 365 (596)
T ss_pred hhhheeCCCCCCHH
Confidence 99999999987664
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=337.59 Aligned_cols=302 Identities=28% Similarity=0.471 Sum_probs=236.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEeec-----------CC----------CCceEEeHHHHHHHHHHHHHHHHhCCCCC
Q psy2417 80 DDVKTLYDAFRKGAKESNNGRCLGWRQN-----------IS----------RPYQWIHYNQALLRARNFGSGLLGLGVNP 138 (391)
Q Consensus 80 ~~~~tl~~~l~~~~~~~pd~~al~~~~~-----------~~----------~~~~~~Ty~el~~~~~~la~~L~~~gv~~ 138 (391)
+...|+.++|+++++++||++|++++.. .+ ++++++||+||.++++++|++|.++|+++
T Consensus 66 ~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~ 145 (700)
T PTZ00216 66 YYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTK 145 (700)
T ss_pred CCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCC
Confidence 3567999999999999999999998631 01 24689999999999999999999999999
Q ss_pred CCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc---CccEEEEe
Q psy2417 139 GSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR---CLKKIISI 215 (391)
Q Consensus 139 g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~---~l~~ii~~ 215 (391)
|++|+|+++|++||+++++||+++|+++||+++.++++++.+++++++++++|++... ...+...... ....+|.+
T Consensus 146 gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~-~~~l~~~~~~~~~~~~~ii~~ 224 (700)
T PTZ00216 146 GSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKN-VPNLLRLMKSGGMPNTTIIYL 224 (700)
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHH-HHHHHHhhhhccCCceEEEEE
Confidence 9999999999999999999999999999999999999999999999999999998753 3333332221 12356666
Q ss_pred cCcchHHHHHHhhCCceEEeHHHHHHhhh--ccC-CCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhh
Q psy2417 216 REVRMATMQRARSRAIEIIRFDEIERVGA--QKM-FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQL 292 (391)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~-~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~ 292 (391)
+..... ....++.+.+|+++...+. ... ....+..++|+++|+|||||||.||||++||+|+++.+......+
T Consensus 225 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~ 300 (700)
T PTZ00216 225 DSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRL 300 (700)
T ss_pred CCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhc
Confidence 543211 1123556788999877652 111 112344689999999999999999999999999999887765543
Q ss_pred cCC--CCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCCCHHhHHH-------HHHhcCCcEEecChHHHHHHHHH
Q psy2417 293 SDH--RPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTE-------DMKTLKPTIMPAVPRLLNRMYDK 363 (391)
Q Consensus 293 ~~~--~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~~~~~l~~-------~i~~~~~t~~~~~P~~l~~l~~~ 363 (391)
... .+.++|++++++|++|++++......+..|+++++. ++..+.+ .+++++||++.++|++++++.+.
T Consensus 301 ~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~--~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~ 378 (700)
T PTZ00216 301 NDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG--SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKA 378 (700)
T ss_pred ccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC--CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHH
Confidence 210 146789999999999999987776778888888773 4555555 78999999999999999999887
Q ss_pred HHHhc-CchhHHHHHHHHHHHHHHHh
Q psy2417 364 VMAQI-RPSFIKRLMFNMAMGSKENE 388 (391)
Q Consensus 364 ~~~~~-~~~slr~~~~gga~~~k~~~ 388 (391)
..... ..+.++..++..++..|...
T Consensus 379 ~~~~~~~~~~~~~~~~~~a~~~~~~~ 404 (700)
T PTZ00216 379 VEAKLPPVGSLKRRVFDHAYQSRLRA 404 (700)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 54433 34577888888777766543
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=340.01 Aligned_cols=303 Identities=22% Similarity=0.340 Sum_probs=243.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 80 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
+...|+.++|++.++++|+++|+.+... .++++++||+|+.++++++|.+|.++|+++||+|+|+++|++||+++++||
T Consensus 424 ~~~~Tl~dll~~~a~~~pd~~al~~~~~-~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~ 502 (1452)
T PTZ00297 424 AGVRSLGEMWERSVTRHSTFRCLGQTSE-SGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVAC 502 (1452)
T ss_pred ccCCCHHHHHHHHHHHCCCCeEEEEecc-CCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 4457999999999999999999975321 234689999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcch-HHHHHHhhCCceEEeHHH
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRM-ATMQRARSRAIEIIRFDE 238 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~-~~~~~~~~~~~~~~~~~~ 238 (391)
+++|+++||+++ +.+++.+++++++++++|++... ...+.+.....++.||+++.... .........++.+++|++
T Consensus 503 ~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~-l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ 579 (1452)
T PTZ00297 503 ALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNS-VAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEF 579 (1452)
T ss_pred HHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhH-HHHHHhhcccCCcEEEEECCCcccccccccccCCcceeeHHH
Confidence 999999999986 46799999999999999998753 55555443337899999874211 000000112455788999
Q ss_pred HHHhhhccCC-CCCCCCCCCceEEEe---cCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHH
Q psy2417 239 IERVGAQKMF-EEVPPKPTDLCTICY---TSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLE 314 (391)
Q Consensus 239 l~~~~~~~~~-~~~~~~~~~~a~i~~---TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 314 (391)
+...+..... ......++|++.|+| ||||||.||||++||+|+++++.............++|++++++||+|+++
T Consensus 580 ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~e 659 (1452)
T PTZ00297 580 VEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFN 659 (1452)
T ss_pred HHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHH
Confidence 9887643221 122347889999996 999999999999999999999887655321001567899999999999999
Q ss_pred HHHHHHHHHhCcEEEEeCCCHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHh
Q psy2417 315 RTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIR-PSFIKRLMFNMAMGSKENE 388 (391)
Q Consensus 315 ~~~~~~~L~~G~~vv~~~~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~-~~slr~~~~gga~~~k~~~ 388 (391)
+...+.+++.|+++++ .++..+++.|++++||++++||++|+++.+.+..+.. .+.++..++..|+..|...
T Consensus 660 r~~~~~~l~~G~~I~~--~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~ 732 (1452)
T PTZ00297 660 RVFVLGLFAHGSAVAT--VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRL 732 (1452)
T ss_pred HHHHHHHHHcCCEEEe--CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 8777888999999976 3689999999999999999999999999888655544 3578899998888877654
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=385.82 Aligned_cols=332 Identities=18% Similarity=0.207 Sum_probs=261.1
Q ss_pred hhhcchhhhhccccchhhhhhhhccccccccc----------------CCCCccCccCcccccC------CCCCcceecc
Q psy2417 22 EIIREQNLALVGTNETMRLRFYYQSDRSSNLR----------------GRGREVVRVSKFFSGA------SEGKFLSTLY 79 (391)
Q Consensus 22 ~~~~~l~~~~~~~~~~l~~~~~y~~~~~~~~~----------------~~~~~~~~~~~~~~~~------~~~~~~~~~~ 79 (391)
-..+ |++.+...++++.++|+|++++|++.+ ..+........+.... ...+....+.
T Consensus 1492 ~~~d-L~l~v~~~~~~l~l~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 1570 (3956)
T PRK12467 1492 AQFD-LTLDTYESSEGLQASLTYATDLFEASTIERLAGHWLNLLQGLVADPERRLGELDLLDEAERRQILEGWNATHTGY 1570 (3956)
T ss_pred cccc-eEEEEEecCCeEEEEEEEeCCcCCHHHHHHHHHHHHHHHHHHhhCccCceeeccccchHHhhhhHHhhcCCccCC
Confidence 3444 888888888899999999999999876 2222222222221100 0011112223
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 80 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
+...+++++|+++++++|+++|+.+.+ +.+||+||+++++++|++|.++|+++|++|+|+++|++++++++|||
T Consensus 1571 ~~~~~~~~~~~~~a~~~p~~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lav 1644 (3956)
T PRK12467 1571 PLARLVHQLIEDQAAATPEAVALVFGE------QELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAI 1644 (3956)
T ss_pred CccccHHHHHHHHHHhCCCCeEEEeCC------cEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHh
Confidence 445689999999999999999999876 78999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHH
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEI 239 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (391)
+++|+++||+||.+|.+++.++++++++++++++... ...+ .... .. .++.++... ++
T Consensus 1645 lkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~-~~~~-~~~~-~~-~~~~~~~~~------------------~~ 1702 (3956)
T PRK12467 1645 LKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHL-QARL-PLPD-GL-RSLVLDQED------------------DW 1702 (3956)
T ss_pred hccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhh-hhhC-cccc-CC-cEEEecccc------------------ch
Confidence 9999999999999999999999999999999998752 1111 1110 11 223333211 00
Q ss_pred HHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHH
Q psy2417 240 ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCES 319 (391)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 319 (391)
.. ......+.....+++++||+|||||||+||||+++|+++++.+.+....++ ++++|+++++.|++|+++++.++
T Consensus 1703 ~~-~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~---~~~~d~~l~~~~~~fd~~~~~~~ 1778 (3956)
T PRK12467 1703 LE-GYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQ---LSAADVVLQFTSFAFDVSVWELF 1778 (3956)
T ss_pred hc-cCCCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcC---CCcccEEEEecCccHHHHHHHHH
Confidence 00 011111223456899999999999999999999999999999998888887 89999999999999999999889
Q ss_pred HHHHhCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q psy2417 320 AMFLVGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSKE 386 (391)
Q Consensus 320 ~~L~~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~k~ 386 (391)
.+|+.|+++++.+. ++..+++.|+++++|++.++|++++.|.+......++++||.+++||+...+.
T Consensus 1779 ~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~lr~v~~gGe~l~~~ 1849 (3956)
T PRK12467 1779 WPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVEHPLSLRRVVCGGEALEVE 1849 (3956)
T ss_pred HHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhccccccCCCceEEEEccccCCHH
Confidence 99999999999764 78999999999999999999999999987533334567999999999876543
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=309.83 Aligned_cols=281 Identities=21% Similarity=0.224 Sum_probs=227.8
Q ss_pred HHHHHHH-hcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEccCCHHHHHHHHHHHhcCCe
Q psy2417 88 AFRKGAK-ESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLG-LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMI 165 (391)
Q Consensus 88 ~l~~~~~-~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~ 165 (391)
.+++... ..+|+.|+++.+..+.. +.+||+||.++++++|..|++ .|+ +||+|+|++|+.+|.++++|||++.|++
T Consensus 14 ~~dr~~~~~~~~~~aii~~~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI 91 (528)
T COG0365 14 ALDRHLEADRPDDTAIIFDGEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAI 91 (528)
T ss_pred hhhhhhhccCCCceEEEEEcCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 4555554 35789999998753333 899999999999999999987 678 9999999999999999999999999999
Q ss_pred EEEccCCCCHHHHHHHHHhcCccEEEEcCCcchh----HHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHH
Q psy2417 166 IVALYDTLGPDACAFIINQAEISVLIVDDDSKCN----QIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIER 241 (391)
Q Consensus 166 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~----~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (391)
++|+.+.++++.+.+.+++++++++|+.+..... .+.....+.+..++.++.. + +.|+++..
T Consensus 92 ~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~-----------~---~~~~~~~~ 157 (528)
T COG0365 92 PAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRL-----------G---LWYDEAVE 157 (528)
T ss_pred EeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccc-----------c---ccHHHHhh
Confidence 9999999999999999999999999998763111 1111111011113333321 1 56666665
Q ss_pred hhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHH-hhcCCCCCCCCEEEEcCChHHHHHHHHH-H
Q psy2417 242 VGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALL-QLSDHRPKYSDVLISFLPLAHMLERTCE-S 319 (391)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~-~~~~~~~~~~d~~l~~~pl~h~~g~~~~-~ 319 (391)
...... .+.+...+|+++|+|||||||+||||+++|++++........ .+. +.++|++++..++.|++|.+.. +
T Consensus 158 ~~~~~~-~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~---~~~~Dv~w~~ad~GW~~g~~~~v~ 233 (528)
T COG0365 158 KASEKF-EFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGD---LLPGDRFWNSSDPGWIYGLWYSVF 233 (528)
T ss_pred ccCCCC-CccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhC---CCCCCEEEeCCCchhhhCchHHHH
Confidence 433222 334478999999999999999999999999988877766655 444 6799999999999999999997 9
Q ss_pred HHHHhCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHh
Q psy2417 320 AMFLVGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGSKENE 388 (391)
Q Consensus 320 ~~L~~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~k~~~ 388 (391)
++|.+|++++++++ ++..+++.|+++++|+++..|+.+++|.+.. ..+.++++||.+.+.|.+...+.+
T Consensus 234 ~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLnpe~~ 307 (528)
T COG0365 234 SPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAF 307 (528)
T ss_pred HHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCCHHHH
Confidence 99999999999865 3889999999999999999999999999874 567889999999999999887764
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=384.48 Aligned_cols=323 Identities=15% Similarity=0.203 Sum_probs=255.3
Q ss_pred hhhhhccccchhhhhhhhccccccccc----------------CCCCccCccCcccccC------CCCCcceeccCCCCC
Q psy2417 27 QNLALVGTNETMRLRFYYQSDRSSNLR----------------GRGREVVRVSKFFSGA------SEGKFLSTLYDDVKT 84 (391)
Q Consensus 27 l~~~~~~~~~~l~~~~~y~~~~~~~~~----------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~t 84 (391)
|++.+.. ++++.++++|++++|++.+ ..+....+..++.... ...+....+.+...+
T Consensus 3018 l~l~~~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 3096 (3956)
T PRK12467 3018 LTLAVGL-GDTLELEFSYDRQHFDAAAIERLAESFDRLLQAMLNNPAARLGELPTLAAHERRQVLHAWNATAAAYPSERL 3096 (3956)
T ss_pred eEEEecc-CcceeEEEEechhhCCHHHHHHHHHHHHHHHHHHHhCcCCchhhccCCCHHHHHHHHHhhccCCCCCCcccc
Confidence 7776654 6789999999999999976 1222222222211000 011111223344579
Q ss_pred HHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCC
Q psy2417 85 LYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSM 164 (391)
Q Consensus 85 l~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~ 164 (391)
++++|+++++++||++|+++.+ +.+||+||+++++++|+.|.++|+++|++|+|+++|++++++++|||+++|+
T Consensus 3097 ~~~l~~~~a~~~p~~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa 3170 (3956)
T PRK12467 3097 VHQLIEAQVARTPEAPALVFGD------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGG 3170 (3956)
T ss_pred HHHHHHHHHHhCCCcceEeeCC------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCc
Confidence 9999999999999999999977 7899999999999999999999999999999999999999999999999999
Q ss_pred eEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhh
Q psy2417 165 IIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGA 244 (391)
Q Consensus 165 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (391)
++||+||.+|.+++.++++++++++++++... ...+.. . ....++.++.. .....
T Consensus 3171 ~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~-~~~~~~-~--~~~~~~~~~~~---------------------~~~~~ 3225 (3956)
T PRK12467 3171 AYVPLDPEYPRERLAYMIEDSGVKLLLTQAHL-LEQLPA-P--AGDTALTLDRL---------------------DLNGY 3225 (3956)
T ss_pred EeecCCCCChHHHHHHHHhCCCCcEEEechhh-hhhccc-c--cCCceeeecch---------------------hhccc
Confidence 99999999999999999999999999998752 111110 0 11122222221 11111
Q ss_pred ccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHh
Q psy2417 245 QKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLV 324 (391)
Q Consensus 245 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~ 324 (391)
....+.....++++|||+|||||||+||||+++|+++.+.+.+....++ ++++|++++++|++|+.++...+.+|+.
T Consensus 3226 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~---~~~~d~~l~~~~~~fd~~~~~~~~~L~~ 3302 (3956)
T PRK12467 3226 SENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYE---LDANDRVLLFMSFSFDGAQERFLWTLIC 3302 (3956)
T ss_pred CCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcC---CCcCCEEEEecCccHhHHHHHHHHHHhC
Confidence 1111223457899999999999999999999999999999999888888 9999999999999999999888999999
Q ss_pred CcEEEEeCC---CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q psy2417 325 GGSIGYYSG---DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 325 G~~vv~~~~---~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~k 385 (391)
|+++++.+. ++..+++.|.++++|++.++|++++.+.+.. ...++++||.+++||+....
T Consensus 3303 G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~-~~~~~~~lr~~~~gGe~~~~ 3365 (3956)
T PRK12467 3303 GGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA-GGADCASLDIYVFGGEAVPP 3365 (3956)
T ss_pred CCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc-cccCCCCceEEEEecCCCCH
Confidence 999999864 8899999999999999999999999987642 23456789999999987643
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=320.24 Aligned_cols=291 Identities=18% Similarity=0.221 Sum_probs=225.6
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.++|+++++.+|+++|+.+.+. ++.++++||+||.++++++|++|.++|+++|++|+|+++|+++|++++|||++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~a~~~~~~-~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~ 116 (614)
T PRK08180 38 PRRLTDRLVHWAQEAPDRVFLAERGA-DGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMY 116 (614)
T ss_pred CccHHHHHHHHHHHCCCCceeeeccC-CCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHH
Confidence 45899999999999999999987532 23357899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCC-----HHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeH
Q psy2417 162 YSMIIVALYDTLG-----PDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236 (391)
Q Consensus 162 ~G~~~vpl~~~~~-----~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (391)
+|+++||++|.++ .+++.+++++++++++|++........+.........++..+.... ......|
T Consensus 117 ~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~ 187 (614)
T PRK08180 117 AGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVEVVAVRGAVP---------GRAATPF 187 (614)
T ss_pred cCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhccCCceEEEecCCCC---------CcccccH
Confidence 9999999999998 7999999999999999998642222222222111122333332110 0012345
Q ss_pred HHHHHhhhccC--CCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCC--CCCEEEEcCChHHH
Q psy2417 237 DEIERVGAQKM--FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPK--YSDVLISFLPLAHM 312 (391)
Q Consensus 237 ~~l~~~~~~~~--~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~--~~d~~l~~~pl~h~ 312 (391)
+++........ .......++|+++|+|||||||.||||++||+++.+.+......+. +. .++++++++|++|+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---~~~~~~~~~l~~lPl~h~ 264 (614)
T PRK08180 188 AALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFP---FLAEEPPVLVDWLPWNHT 264 (614)
T ss_pred HHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhcc---ccCCCCcEEEEecchHHH
Confidence 55543211110 0112346799999999999999999999999999998877766655 43 56899999999999
Q ss_pred HHHHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHH-----hcCchhHHHHHHHHH
Q psy2417 313 LERTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMA-----QIRPSFIKRLMFNMA 381 (391)
Q Consensus 313 ~g~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~-----~~~~~slr~~~~gga 381 (391)
+|+... +.+|+.|+++++.+. ++..+++.++++++|+++++|.++..|++.... ..++++||.+++||+
T Consensus 265 ~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa 344 (614)
T PRK08180 265 FGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGA 344 (614)
T ss_pred hhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccC
Confidence 998755 789999999999753 345778899999999999999999999875322 234679999999998
Q ss_pred HHHH
Q psy2417 382 MGSK 385 (391)
Q Consensus 382 ~~~k 385 (391)
...+
T Consensus 345 ~l~~ 348 (614)
T PRK08180 345 ALSQ 348 (614)
T ss_pred CCCH
Confidence 7543
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=321.84 Aligned_cols=295 Identities=17% Similarity=0.155 Sum_probs=227.4
Q ss_pred CHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcC
Q psy2417 84 TLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYS 163 (391)
Q Consensus 84 tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G 163 (391)
..+++|+++++.+|+++|+++.+..++..+.+||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 53 ~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~G 132 (628)
T TIGR02316 53 LCHNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIG 132 (628)
T ss_pred HHHHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhC
Confidence 45688888888899999999854222335789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc-----------hhHHHhhcccCccEEEEecCcchHHHHHHhhCCce
Q psy2417 164 MIIVALYDTLGPDACAFIINQAEISVLIVDDDSK-----------CNQIIDRAPRCLKKIISIREVRMATMQRARSRAIE 232 (391)
Q Consensus 164 ~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----------~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (391)
++++|+++.++.+++.+++++++++++|++.... ....+.........++.++...... ......
T Consensus 133 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~~~~~~ 208 (628)
T TIGR02316 133 AIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM----RLIPGR 208 (628)
T ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----CcccCc
Confidence 9999999999999999999999999999976421 1111111111345666665321100 000001
Q ss_pred EEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHH-HHHHHhhcCCCCCCCCEEEEcCChHH
Q psy2417 233 IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAI-SAALLQLSDHRPKYSDVLISFLPLAH 311 (391)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~-~~~~~~~~~~~~~~~d~~l~~~pl~h 311 (391)
...|+++.........+.....+++++||+|||||||.||||+++|++++... ......++ +.++|++++.+|++|
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~ 285 (628)
T TIGR02316 209 DVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFG---IRAGQVMFSASDVGW 285 (628)
T ss_pred cccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcC---CCCCcEEEEcCCCCe
Confidence 23555554432111111222467999999999999999999999999986443 34444555 888999999999999
Q ss_pred HHHHHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH---HHhcCchhHHHHHHHHHH
Q psy2417 312 MLERTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV---MAQIRPSFIKRLMFNMAM 382 (391)
Q Consensus 312 ~~g~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~---~~~~~~~slr~~~~gga~ 382 (391)
++|+... +.+|+.|++++++++ ++..+++.|+++++|+++++|++++.|.+.. ....++++||.+++||+.
T Consensus 286 ~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~ 365 (628)
T TIGR02316 286 VVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEP 365 (628)
T ss_pred eehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCC
Confidence 9997654 899999999999763 7889999999999999999999999887652 234567899999999987
Q ss_pred HHH
Q psy2417 383 GSK 385 (391)
Q Consensus 383 ~~k 385 (391)
...
T Consensus 366 l~~ 368 (628)
T TIGR02316 366 LDE 368 (628)
T ss_pred CCH
Confidence 543
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=352.86 Aligned_cols=348 Identities=16% Similarity=0.145 Sum_probs=253.0
Q ss_pred chhhhhccccchhhhhhhhccccccccc----------------CCCCccCccCcccccCCCCCc-----ceeccCCCCC
Q psy2417 26 EQNLALVGTNETMRLRFYYQSDRSSNLR----------------GRGREVVRVSKFFSGASEGKF-----LSTLYDDVKT 84 (391)
Q Consensus 26 ~l~~~~~~~~~~l~~~~~y~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~t 84 (391)
||.+.+...++++.++|+|++++|++.+ ..+........+........+ ...+.....+
T Consensus 158 dl~~~v~~~~~~l~l~~~y~~~lf~~~~i~~l~~~f~~lL~~~~~~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1389)
T TIGR03443 158 DLTVFLTPSSPELELSIYYNSLLFSSDRITIVADQLAQLLSAASSNPDEPIGKVSLITPSQKSLLPDPTKDLDWSGFRGA 237 (1389)
T ss_pred ceEEEEEecCCcEEEEEEEchhcCCHHHHHHHHHHHHHHHHHHHhCcCCceecccCCCHHHHhhhhccccccCcCcccCc
Confidence 5899999999999999999999999976 122222222221100000000 0001112358
Q ss_pred HHHHHHHHHHhcCCCceEEEeecC---CCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 85 LYDAFRKGAKESNNGRCLGWRQNI---SRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 85 l~~~l~~~~~~~pd~~al~~~~~~---~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
++++|+++++++||++|+++.... ....+.+||+||+++++++|++|.+.|+++|++|+|+++|++++++++|||++
T Consensus 238 l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~ 317 (1389)
T TIGR03443 238 IHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLK 317 (1389)
T ss_pred HHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHHHh
Confidence 999999999999999999864311 12347899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCc-chhHH-Hhhccc------CccEEEEecCcchHHHHHHhhCCceE
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDS-KCNQI-IDRAPR------CLKKIISIREVRMATMQRARSRAIEI 233 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~-~~~~~-~~~~~~------~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (391)
+|+++||++|.++.+++.+++++++++++++.... ..... ...... .+..+...+..... .....
T Consensus 318 ~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~- 390 (1389)
T TIGR03443 318 AGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLV------GGSLE- 390 (1389)
T ss_pred hCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccccc------ccccc-
Confidence 99999999999999999999999999999987641 01111 110000 11111111110000 00000
Q ss_pred EeHHHHHHhhh--ccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHH
Q psy2417 234 IRFDEIERVGA--QKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311 (391)
Q Consensus 234 ~~~~~l~~~~~--~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 311 (391)
....+...... ..........+++++||+|||||||.||||+++|+++++.+.+....++ +.++|++++++|++|
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~---~~~~d~~~~~~~~~~ 467 (1389)
T TIGR03443 391 GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFG---LSENDKFTMLSGIAH 467 (1389)
T ss_pred cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcC---CCCCCEEEEecCcee
Confidence 00000000000 0001112346789999999999999999999999999999988888887 899999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q psy2417 312 MLERTCESAMFLVGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 312 ~~g~~~~~~~L~~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~k 385 (391)
+.++..++.+|+.|+++++.+. ++..+++.|.++++|+++++|++++.|.... ..++++||.+++||+...+
T Consensus 468 d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~--~~~~~~lr~~~~gGe~l~~ 543 (1389)
T TIGR03443 468 DPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA--TTPIPSLHHAFFVGDILTK 543 (1389)
T ss_pred cchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc--cccCCCccEEEEecccCCH
Confidence 9999988999999999999754 6889999999999999999999999887532 2346789999999886544
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=351.07 Aligned_cols=324 Identities=15% Similarity=0.127 Sum_probs=251.5
Q ss_pred cchhhhhc-cccchhhhhhhhccccccccc----------------CCCCccCccCccccc-----CCCCCcceeccCCC
Q psy2417 25 REQNLALV-GTNETMRLRFYYQSDRSSNLR----------------GRGREVVRVSKFFSG-----ASEGKFLSTLYDDV 82 (391)
Q Consensus 25 ~~l~~~~~-~~~~~l~~~~~y~~~~~~~~~----------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 82 (391)
.||++.+. +.++++.++++|++++|++.+ ..+........+... +...+-...+.+ .
T Consensus 379 ~dl~l~~~~~~~~~l~~~~~y~~~~f~~~~i~~l~~~~~~ll~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~ 457 (1296)
T PRK10252 379 NDLELALFPDEHGGLSIEILANPQRYDEATLIAHAERLKALIAQFAADPALLCGDVDILLPGEYAQLAQVNATAVEIP-E 457 (1296)
T ss_pred CCeEEEEEECCCCcEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHhCCCCChhhcCCCCHHHHHHHHHhcCCCCCCC-c
Confidence 36888887 566789999999999999876 112211111111000 000000111122 3
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
.++.++|+++++.+|+++|+.+.+ +.+||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++||+++
T Consensus 458 ~~l~~~~~~~~~~~p~~~Al~~~~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~ 531 (1296)
T PRK10252 458 TTLSALVAQQAAKTPDAPALADAR------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEA 531 (1296)
T ss_pred CCHHHHHHHHHHhCCCCeEEEcCC------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 589999999999999999999876 68999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHh
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERV 242 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (391)
|+++||++|.++.+++.++++++++++++++... ...+ .... .+ ....++.....
T Consensus 532 G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~-~~~~-~~~~-~~----------------------~~~~~~~~~~~ 586 (1296)
T PRK10252 532 GAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQ-LPRF-ADVP-DL----------------------TSLCYNAPLAP 586 (1296)
T ss_pred CCEEEecCccCHHHHHHHHHHhCCCCEEEECcch-hhhc-ccCC-Cc----------------------eeeeccccccc
Confidence 9999999999999999999999999999998752 1111 1100 01 01111111000
Q ss_pred hhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHH
Q psy2417 243 GAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMF 322 (391)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L 322 (391)
..........+++++||+|||||||.||||+++|+++.+.+.+....++ +.++|++++.+|++|++++...+.+|
T Consensus 587 --~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~---~~~~d~~l~~~~~~fd~~~~~~~~~l 661 (1296)
T PRK10252 587 --QGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYP---LTADDVVLQKTPCSFDVSVWEFFWPF 661 (1296)
T ss_pred --ccCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcC---CCCCCEEEEeCCcchhhhHHHHHHHH
Confidence 0001112236789999999999999999999999999999999888888 99999999999999999999889999
Q ss_pred HhCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHH
Q psy2417 323 LVGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQ---IRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 323 ~~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~---~~~~slr~~~~gga~~~k 385 (391)
+.|+++++.+. ++..+.+.++++++|++.++|+++..+.+..... ..++++|.+++||+....
T Consensus 662 ~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~ 731 (1296)
T PRK10252 662 IAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPA 731 (1296)
T ss_pred hCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCH
Confidence 99999999753 8899999999999999999999999988763221 235689999999986543
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=322.93 Aligned_cols=293 Identities=16% Similarity=0.200 Sum_probs=225.3
Q ss_pred CCHH-HHHHHHHHhcCCCceEEEeecC--CCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 83 KTLY-DAFRKGAKESNNGRCLGWRQNI--SRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 83 ~tl~-~~l~~~~~~~pd~~al~~~~~~--~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
.++. ..|++.+..+|+++|+++.+.. +.+.+.+||+||.++++++|++|+++|+++||+|+++++|++|+++++|||
T Consensus 174 ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~ 253 (728)
T PLN03052 174 LNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAI 253 (728)
T ss_pred eEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 4444 4666666678999999987631 224578999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc--------hhHHHhhcccCccEEEEecCcchHHHHHHhhCCc
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK--------CNQIIDRAPRCLKKIISIREVRMATMQRARSRAI 231 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--------~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (391)
+++|++++|++|.++++++.+++++++++++|+++... ...+.+... ..++.+........ .....
T Consensus 254 ~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~---~~~iv~~~~~~~~~---~~~~~ 327 (728)
T PLN03052 254 ILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA---PKAIVLPADGKSVR---VKLRE 327 (728)
T ss_pred HHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC---CcEEEEeCCCCccc---ccccc
Confidence 99999999999999999999999999999999976421 111221111 22333322110000 00001
Q ss_pred eEEeHHHHHHhhhcc----CCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcC
Q psy2417 232 EIIRFDEIERVGAQK----MFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFL 307 (391)
Q Consensus 232 ~~~~~~~l~~~~~~~----~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~ 307 (391)
....|+++....... ...+....++++++|+|||||||.||||+++|++++..+......+. +.++|++++++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~---l~~~d~~~~~~ 404 (728)
T PLN03052 328 GDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLD---IRKGDIVCWPT 404 (728)
T ss_pred CCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcC---CCCCcEEEECC
Confidence 134577765432111 01112234689999999999999999999999998877665555555 88999999999
Q ss_pred ChHHHHHHHHHHHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHH-HHHhcCchhHHHHHHHHHHHH
Q psy2417 308 PLAHMLERTCESAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK-VMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 308 pl~h~~g~~~~~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~-~~~~~~~~slr~~~~gga~~~ 384 (391)
|++|+++....+.+|+.|++++++++ ++..+++.++++++|++.++|++++.|.+. .....++++||.+++||+...
T Consensus 405 ~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~Ge~l~ 484 (728)
T PLN03052 405 NLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASS 484 (728)
T ss_pred CcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEecCCCCC
Confidence 99999999777899999999999876 557899999999999999999999998775 235568889999999998653
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=320.28 Aligned_cols=298 Identities=16% Similarity=0.151 Sum_probs=223.1
Q ss_pred HHHHHHHHHH-hcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcC
Q psy2417 85 LYDAFRKGAK-ESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYS 163 (391)
Q Consensus 85 l~~~l~~~~~-~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G 163 (391)
..++|+++++ .+|+++|+++.+..++..+.+||+||.++++++|++|+++|+++||+|+|+++|++|+++++|||+++|
T Consensus 90 ~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~G 169 (666)
T PLN02654 90 CYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIG 169 (666)
T ss_pred HHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 4678887776 489999998854323345789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcch--------hHHHhhccc------CccEEEEecCcchHHHHHHhhC
Q psy2417 164 MIIVALYDTLGPDACAFIINQAEISVLIVDDDSKC--------NQIIDRAPR------CLKKIISIREVRMATMQRARSR 229 (391)
Q Consensus 164 ~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~--------~~~~~~~~~------~l~~ii~~~~~~~~~~~~~~~~ 229 (391)
++++|+++.++.+++.+++++++++++|++..... ..+...... .+..++..+.............
T Consensus 170 av~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (666)
T PLN02654 170 AVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQ 249 (666)
T ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccc
Confidence 99999999999999999999999999999875210 001111000 1122222222100000000000
Q ss_pred CceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHH-HHHHHhhcCCCCCCCCEEEEcCC
Q psy2417 230 AIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAI-SAALLQLSDHRPKYSDVLISFLP 308 (391)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~-~~~~~~~~~~~~~~~d~~l~~~p 308 (391)
......|+++.... ..........++|+++|+|||||||.||||+++|++++... ......+. +.++|++++.+|
T Consensus 250 ~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~---~~~~d~~~~~~~ 325 (666)
T PLN02654 250 EGRDVWWQDVVPNY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFD---YKPTDVYWCTAD 325 (666)
T ss_pred cCCcccHHHHhhcC-CCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcC---CCCCcEEEEcCC
Confidence 00123355544321 11111223467999999999999999999999999987543 44444555 889999999999
Q ss_pred hHHHHHHHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH---HHhcCchhHHHHHHH
Q psy2417 309 LAHMLERTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV---MAQIRPSFIKRLMFN 379 (391)
Q Consensus 309 l~h~~g~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~---~~~~~~~slr~~~~g 379 (391)
++|++|.... +.+|+.|++++++++ ++..+++.|+++++|++..+|++++.|.+.. ..+.++++||.++++
T Consensus 326 ~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~ 405 (666)
T PLN02654 326 CGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSV 405 (666)
T ss_pred chhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEe
Confidence 9999998766 899999999999863 7899999999999999999999999998762 234577899999999
Q ss_pred HHHHHHH
Q psy2417 380 MAMGSKE 386 (391)
Q Consensus 380 ga~~~k~ 386 (391)
|++....
T Consensus 406 Ge~l~~~ 412 (666)
T PLN02654 406 GEPINPS 412 (666)
T ss_pred cCCCCHH
Confidence 9876543
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=317.65 Aligned_cols=289 Identities=18% Similarity=0.207 Sum_probs=227.4
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
...++.++|+++++++|+++|+.+.+ +.+||+||.++++++|.+|.++|+++|++|+|+++|+++|+++++||+
T Consensus 5 ~~~~~~~~~~~~~~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~ 78 (563)
T PLN02860 5 SQAHICQCLTRLATLRGNAVVTISGN------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVA 78 (563)
T ss_pred hhhHHHHHHHHHHHhcCCceEEecCC------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHh
Confidence 45689999999999999999998755 689999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc--hhHHH-hhcccCccEEEEecCcchHHHHHHhhCCceEEeHH
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK--CNQII-DRAPRCLKKIISIREVRMATMQRARSRAIEIIRFD 237 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--~~~~~-~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (391)
++|++++|+++.++.+++.++++++++++++++.... ...+. ...+ .++.++.++....... ..-..+..++
T Consensus 79 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~----~~~~~~~~~~ 153 (563)
T PLN02860 79 CAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLP-SLMWQVFLESPSSSVF----IFLNSFLTTE 153 (563)
T ss_pred hccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCC-ceeEEEEecCcccccc----cchhhccccc
Confidence 9999999999999999999999999999999987521 11111 1111 3444554443211000 0000111222
Q ss_pred HHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHH
Q psy2417 238 EIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTC 317 (391)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 317 (391)
++...+...........++++++|+|||||||.||||+++|++++.+.......++ +.++|++++.+|++|++++..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~---~~~~d~~l~~~pl~h~~g~~~ 230 (563)
T PLN02860 154 MLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVG---YGEDDVYLHTAPLCHIGGLSS 230 (563)
T ss_pred hhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcC---CCCCCEEEEecCchhhccHHH
Confidence 22111111111112336789999999999999999999999999987777666666 889999999999999999988
Q ss_pred HHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHH---hcCchhHHHHHHHHHHH
Q psy2417 318 ESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMA---QIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 318 ~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~---~~~~~slr~~~~gga~~ 383 (391)
.+.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+.... ..++++||.+++||+..
T Consensus 231 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l 300 (563)
T PLN02860 231 ALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSL 300 (563)
T ss_pred HHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcC
Confidence 8999999999998765 999999999999999999999999999876322 24567899999998765
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=377.99 Aligned_cols=327 Identities=15% Similarity=0.134 Sum_probs=254.3
Q ss_pred hhhhhccccchhhhhhhhccccccccc----------------CCCCccCccCccccc------CCCCCcceeccCCCCC
Q psy2417 27 QNLALVGTNETMRLRFYYQSDRSSNLR----------------GRGREVVRVSKFFSG------ASEGKFLSTLYDDVKT 84 (391)
Q Consensus 27 l~~~~~~~~~~l~~~~~y~~~~~~~~~----------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~t 84 (391)
|++.+ .+++++.+++.|++++|++.+ ..+........+... ....+....+.+...+
T Consensus 3643 l~~~~-~~~~~l~~~l~y~~~~~~~~~~~~l~~~f~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3721 (4334)
T PRK05691 3643 LTAVC-YPGDDLGLHLSYDQRYFDAPTVERLLGEFKRLLLALVQGFHGDLSELPLLGEQERDFLLDGCNRSERDYPLEQS 3721 (4334)
T ss_pred eEEEE-ecCCceEEEEEEchhhCCHHHHHHHHHHHHHHHHHHHhCcCCChhhcCCCCHHHHHHHHHhhCCccCCCccccC
Confidence 66644 456789999999999999865 112111111111100 0011112233445679
Q ss_pred HHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCC
Q psy2417 85 LYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSM 164 (391)
Q Consensus 85 l~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~ 164 (391)
++++|+++++++||++|+.+.+ ..+||+||+++++++|++|.++|+++|++|+|++++++++++++|||+++|+
T Consensus 3722 ~~~~~~~~~~~~p~~~Av~~~~------~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~ 3795 (4334)
T PRK05691 3722 YVRLFEAQVAAHPQRIAASCLD------QQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGA 3795 (4334)
T ss_pred HHHHHHHHHHhCCCceEEEcCC------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCc
Confidence 9999999999999999999988 6899999999999999999999999999999999999999999999999999
Q ss_pred eEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc--hhHHHhhccc-CccEEEEecCcchHHHHHHhhCCceEEeHHHHHH
Q psy2417 165 IIVALYDTLGPDACAFIINQAEISVLIVDDDSK--CNQIIDRAPR-CLKKIISIREVRMATMQRARSRAIEIIRFDEIER 241 (391)
Q Consensus 165 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--~~~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (391)
++|||||++|.+++.++++++++++++++.... ...+...... ....++..+ +...
T Consensus 3796 a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 3854 (4334)
T PRK05691 3796 GYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWE---------------------EVQA 3854 (4334)
T ss_pred EEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeec---------------------cccc
Confidence 999999999999999999999999999988531 1112211110 111111111 1111
Q ss_pred hhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHH
Q psy2417 242 VGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM 321 (391)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~ 321 (391)
.............++++|||+|||||||.||||+++|+++++.+.+....++ ++++|+++++.|++|+.+++..+.+
T Consensus 3855 ~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~fd~s~~~~~~~ 3931 (4334)
T PRK05691 3855 GEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLA---LSEADVIAQTASQSFDISVWQFLAA 3931 (4334)
T ss_pred ccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcC---CCccceEEEecCCchhHHHHHHHHH
Confidence 1111112223457899999999999999999999999999999999888888 9999999999999999999999999
Q ss_pred HHhCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q psy2417 322 FLVGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSKE 386 (391)
Q Consensus 322 L~~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~k~ 386 (391)
|+.|+++++++. ++..+++.++++++|++.+||++++.+++.. ...+++||.+++||+.....
T Consensus 3932 l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~--~~~~~~lr~~~~gGe~l~~~ 3998 (4334)
T PRK05691 3932 PLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED--RQALDGLRWMLPTGEAMPPE 3998 (4334)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc--cccCCCceEEEecCCcCCHH
Confidence 999999999864 7899999999999999999999999887542 23456899999999876443
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=314.00 Aligned_cols=284 Identities=26% Similarity=0.374 Sum_probs=228.1
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCce-EEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQ-WIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~-~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
...++.+++++.++.+|+++|+.+.+. . .+||+||+++++++|++|++.|+++||+|+|+++|++++++++|||
T Consensus 9 ~~~~~~~~l~~~a~~~~~~~a~~~~~~-----~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~ 83 (534)
T COG0318 9 AELTLASLLERAARRNPDRPALIFLGR-----GGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAA 83 (534)
T ss_pred ccccHHHHHHHHHHhCCCceEEEEcCC-----CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 356899999999999999999999884 2 4999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc---CccEEEEecCcchHHHHHHhhCCceE-Ee
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR---CLKKIISIREVRMATMQRARSRAIEI-IR 235 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~---~l~~ii~~~~~~~~~~~~~~~~~~~~-~~ 235 (391)
+++|++++|++|.+..+++.++++++++++++++.. .....+.... ....+........ .. ..
T Consensus 84 ~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 150 (534)
T COG0318 84 LRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAE--FAALLEAVAEALPVVLVVLLVGDADD-----------RLPIT 150 (534)
T ss_pred HhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEccc--chhHHHHHhccCCcceEEEecccccc-----------ccccc
Confidence 999999999999999999999999999999999986 3223222221 1122222111100 00 23
Q ss_pred HHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHH
Q psy2417 236 FDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLER 315 (391)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 315 (391)
++++...............++|+++|+|||||||.||||++||+|++.+.......+... +.++|++++.+|++|++|+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~-~~~~d~~l~~lPl~H~~Gl 229 (534)
T COG0318 151 LEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGG-LTPDDVVLSWLPLFHIFGL 229 (534)
T ss_pred HHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhccc-CCCCceEEEecChHHHHHH
Confidence 444422221111111225789999999999999999999999999999988777766522 5788999999999999999
Q ss_pred HHH-HHHHHhCcEEEEeC---CCHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchh-HHHHHHHHHHH
Q psy2417 316 TCE-SAMFLVGGSIGYYS---GDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSF-IKRLMFNMAMG 383 (391)
Q Consensus 316 ~~~-~~~L~~G~~vv~~~---~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~s-lr~~~~gga~~ 383 (391)
... +.+++.|+++++.+ .++..++..+.++++|++.++|.++..+++.. ....+.++ ||.++.||++.
T Consensus 230 ~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~ 303 (534)
T COG0318 230 IVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPL 303 (534)
T ss_pred HHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcC
Confidence 988 55699999999987 38999999999999999999999999988873 34444544 99999999983
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=314.80 Aligned_cols=283 Identities=18% Similarity=0.209 Sum_probs=231.1
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
.++.++|+++++.+||++|+++.+ +.+||+||.++++++|++|.+.|+++|++|+++++|+++|+++++||+++
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~ 122 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDER------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKV 122 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEECC------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Confidence 389999999999999999999865 68999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEeHHHHH
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (391)
|+++||+++.++.+++.+++++++++++|++.+. ...+...... .++.++....... .....+..++++.
T Consensus 123 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 194 (549)
T PRK07788 123 GARIILLNTGFSGPQLAEVAAREGVKALVYDDEF-TDLLSALPPDLGRLRAWGGNPDDDE-------PSGSTDETLDDLI 194 (549)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchh-HHHHHhhccccccceEEEEecCccc-------cCCcCcccHHHHh
Confidence 9999999999999999999999999999998752 2222221111 2222222111100 0112345666665
Q ss_pred HhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHH
Q psy2417 241 RVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESA 320 (391)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~ 320 (391)
..... .+.+...++.++|+|||||||.||||+++|+++.+.+......+. +..+|+++..+|++|++|+...+.
T Consensus 195 ~~~~~---~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~---~~~~d~~~~~~p~~~~~g~~~~~~ 268 (549)
T PRK07788 195 AGSST---APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVP---FRAGETTLLPAPMFHATGWAHLTL 268 (549)
T ss_pred cCCCC---CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCC---CCcCCeEEEccchHHHHHHHHHHH
Confidence 43221 222335678899999999999999999999999998887777776 889999999999999999987788
Q ss_pred HHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH---HhcCchhHHHHHHHHHHHHH
Q psy2417 321 MFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM---AQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 321 ~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~---~~~~~~slr~~~~gga~~~k 385 (391)
++..|+++++.+. ++..+++.+++++||++.++|+++..+.+... ...++++||.+++||+...+
T Consensus 269 ~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~ 337 (549)
T PRK07788 269 AMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSP 337 (549)
T ss_pred HHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCH
Confidence 9999999998765 99999999999999999999999999987633 34567799999999986543
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=315.55 Aligned_cols=293 Identities=16% Similarity=0.211 Sum_probs=224.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 80 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
+...++.++|+++++++||++|+.+.+..++.++.+||+||.++++++|++|.+.|+++|++|+++++|+++|+++++||
T Consensus 46 ~~~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 125 (624)
T PRK12582 46 PYPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAA 125 (624)
T ss_pred CcccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHH
Confidence 34668999999999999999999875421234678999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCH-----HHHHHHHHhcCccEEEEcCCcchhHHHhhccc-CccEEEEecCcchHHHHHHhhCCceE
Q psy2417 160 YCYSMIIVALYDTLGP-----DACAFIINQAEISVLIVDDDSKCNQIIDRAPR-CLKKIISIREVRMATMQRARSRAIEI 233 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~-----~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (391)
+++|++++|++|.++. +++.+++++++++++|++........+..... .+ .++.++.... ....
T Consensus 126 ~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~---------~~~~ 195 (624)
T PRK12582 126 MQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDV-TVVHVTGPGE---------GIAS 195 (624)
T ss_pred HHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhcCc-eEEEEcCCCc---------cccc
Confidence 9999999999999985 99999999999999999874322322222221 22 2344432210 1122
Q ss_pred EeHHHHHHhhhccC--CCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCC---CCEEEEcCC
Q psy2417 234 IRFDEIERVGAQKM--FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKY---SDVLISFLP 308 (391)
Q Consensus 234 ~~~~~l~~~~~~~~--~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~---~d~~l~~~p 308 (391)
..++++........ .......++++++|+|||||||.||||++||+++++.+......+. ... .++++.++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~---~~~~~~~~~~l~~lP 272 (624)
T PRK12582 196 IAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRP---REPDPPPPVSLDWMP 272 (624)
T ss_pred ccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhcc---ccCCCCCceEEEech
Confidence 34555543221110 0012245789999999999999999999999999988776655443 333 589999999
Q ss_pred hHHHHHHHHH-HHHHHhCcEEEEeCC--C---HHhHHHHHHhcCCcEEecChHHHHHHHHHHH-----HhcCchhHHHHH
Q psy2417 309 LAHMLERTCE-SAMFLVGGSIGYYSG--D---IKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-----AQIRPSFIKRLM 377 (391)
Q Consensus 309 l~h~~g~~~~-~~~L~~G~~vv~~~~--~---~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-----~~~~~~slr~~~ 377 (391)
++|++|+... +.+|..|+++++.+. + ...+++.++++++|+++++|.+++.|++... ...++++||.++
T Consensus 273 l~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~ 352 (624)
T PRK12582 273 WNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMA 352 (624)
T ss_pred HHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEE
Confidence 9999998766 678999999998753 2 3456778899999999999999999876532 223467899999
Q ss_pred HHHHHHHH
Q psy2417 378 FNMAMGSK 385 (391)
Q Consensus 378 ~gga~~~k 385 (391)
+||+....
T Consensus 353 ~gGa~l~~ 360 (624)
T PRK12582 353 YGGATLSD 360 (624)
T ss_pred ecCCCCCH
Confidence 99987644
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=375.35 Aligned_cols=325 Identities=17% Similarity=0.207 Sum_probs=253.2
Q ss_pred hhhhhccccchhhhhhhhccccccccc----------------CCCCccCccCccccc------CCCCCcceeccCCCCC
Q psy2417 27 QNLALVGTNETMRLRFYYQSDRSSNLR----------------GRGREVVRVSKFFSG------ASEGKFLSTLYDDVKT 84 (391)
Q Consensus 27 l~~~~~~~~~~l~~~~~y~~~~~~~~~----------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~t 84 (391)
|++.+. .++++.++++|++++|+..+ ..+....+...+... ....+....+.+...+
T Consensus 1926 l~l~~~-~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~ 2004 (5163)
T PRK12316 1926 LTLAVT-LGETLSLQYSYDRGHFDAAAIERLDRHLLHLLEQMAEDAQAALGELALLDAGERQRILADWDRTPEAYPRGPG 2004 (5163)
T ss_pred eEEEEe-cCCcEEEEEecChhhCCHHHHHHHHHHHHHHHHHHHhCcccccccccCCCHHHHHHHHHhcCCCCCCCCCCCC
Confidence 666654 46789999999999999876 122222222222110 0001111223344568
Q ss_pred HHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCC
Q psy2417 85 LYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSM 164 (391)
Q Consensus 85 l~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~ 164 (391)
++++|+++++.+|+++|+.+.+ +.+||+||+++++++|++|.++|+++|++|+|+++|++++++++|||+++|+
T Consensus 2005 ~~~~~~~~a~~~p~~~A~~~~~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa 2078 (5163)
T PRK12316 2005 VHQRIAEQAARAPEAIAVVFGD------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGG 2078 (5163)
T ss_pred HHHHHHHHHHhCCCCeEEEcCC------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhce
Confidence 9999999999999999999877 6899999999999999999999999999999999999999999999999999
Q ss_pred eEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhh
Q psy2417 165 IIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGA 244 (391)
Q Consensus 165 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (391)
++|||||.+|.+++.++++++++++++++... ...+ .... .+. .+.++.. ..+...
T Consensus 2079 ~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~-~~~~-~~~~-~~~-~~~~~~~------------------~~~~~~-- 2134 (5163)
T PRK12316 2079 AYVPLDPNYPAERLAYMLEDSGAALLLTQRHL-LERL-PLPA-GVA-RLPLDRD------------------AEWADY-- 2134 (5163)
T ss_pred EEeecCCCCCHHHHHHHHHhcCCCEEEeChhh-hhhc-cccc-ccc-eEeccch------------------hhhhcc--
Confidence 99999999999999999999999999998752 1111 1000 111 1111110 000000
Q ss_pred ccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHh
Q psy2417 245 QKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLV 324 (391)
Q Consensus 245 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~ 324 (391)
....+.....+++++||+|||||||.||||+++|+++.+.+.+....++ ++++|++++++|++|+.++..++.+|+.
T Consensus 2135 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~---~~~~d~~l~~~~~~fd~~~~~~~~~L~~ 2211 (5163)
T PRK12316 2135 PDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYE---LSPADCELQFMSFSFDGAHEQWFHPLLN 2211 (5163)
T ss_pred CccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcC---CCCcceEEEecCchHHHHHHHHHHHHhC
Confidence 1111223457899999999999999999999999999999999888888 8999999999999999999999999999
Q ss_pred CcEEEEeCC---CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q psy2417 325 GGSIGYYSG---DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 325 G~~vv~~~~---~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~k 385 (391)
|+++++.+. ++..+++.|+++++|++.++|++++.+.+.........+||.+++||+....
T Consensus 2212 G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~lr~~~~gGe~l~~ 2275 (5163)
T PRK12316 2212 GARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGRPPAVRVYCFGGEAVPA 2275 (5163)
T ss_pred CCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcccCCcceeEEEEecccCCH
Confidence 999987653 7899999999999999999999999998764333333489999999987644
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=376.36 Aligned_cols=328 Identities=14% Similarity=0.171 Sum_probs=258.3
Q ss_pred chhhhhccccchhhhhhhhccccccccc----------------CCCCccCccCcccccC------CCCCcceeccCCCC
Q psy2417 26 EQNLALVGTNETMRLRFYYQSDRSSNLR----------------GRGREVVRVSKFFSGA------SEGKFLSTLYDDVK 83 (391)
Q Consensus 26 ~l~~~~~~~~~~l~~~~~y~~~~~~~~~----------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 83 (391)
||.|.+...++++.+.|+|++++|++.+ ..+.......++.... ...+......+...
T Consensus 432 dL~l~v~~~~~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~~i~~~p~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (5163)
T PRK12316 432 DLTLDTYEKGGRLHAALTYATDLFEARTVERMARHWQNLLRGMVENPQARVDELPMLDAEERGQLVEGWNATAAEYPLQR 511 (5163)
T ss_pred eEEEEEEEcCCcEEEEEEEchhhCCHHHHHHHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHhcCccccCCCCC
Confidence 4888888889999999999999999876 1222222222211100 00111112223356
Q ss_pred CHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcC
Q psy2417 84 TLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYS 163 (391)
Q Consensus 84 tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G 163 (391)
+++++|+++++++|+++|+.+.+ +.+||+||+++++++|+.|.+.|+++|++|+|+++|++++++++|||+++|
T Consensus 512 ~~~~~~~~~a~~~p~~~A~~~~~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG 585 (5163)
T PRK12316 512 GVHRLFEEQVERTPEAPALAFGE------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAG 585 (5163)
T ss_pred CHHHHHHHHHHHCCCCeEEEeCC------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 89999999999999999999876 789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhh
Q psy2417 164 MIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVG 243 (391)
Q Consensus 164 ~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 243 (391)
+++||++|.+|.+++.++++++++++++++... ... ..... . ..++.++.... ... .
T Consensus 586 ~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~-~~~-~~~~~-~-~~~~~~~~~~~------------------~~~-~ 642 (5163)
T PRK12316 586 GAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHL-GRK-LPLAA-G-VQVLDLDRPAA------------------WLE-G 642 (5163)
T ss_pred CEEeccCccCcHHHHHHHHHhCCCCEEEEChhh-hhh-CCccc-C-ceEEEecCcch------------------hhc-c
Confidence 999999999999999999999999999998752 111 11100 1 12333332110 000 0
Q ss_pred hccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHH
Q psy2417 244 AQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFL 323 (391)
Q Consensus 244 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~ 323 (391)
...........+++++||+|||||||.||||+++|+++++.+.+....++ +..+|++++++|++|++++...+.+|+
T Consensus 643 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~fd~~~~~~~~~L~ 719 (5163)
T PRK12316 643 YSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYG---LGVGDTVLQKTPFSFDVSVWEFFWPLM 719 (5163)
T ss_pred CCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcC---CCCCCEEEeeCCeehHHHHHHHHHHHh
Confidence 11111223356899999999999999999999999999999999988888 899999999999999999999999999
Q ss_pred hCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q psy2417 324 VGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSKE 386 (391)
Q Consensus 324 ~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~k~ 386 (391)
.|+++++.+. ++..+++.+.++++|++.++|++++.|.+.. ...+++++|.+++||+...+.
T Consensus 720 ~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~-~~~~~~~l~~~~~gGe~l~~~ 785 (5163)
T PRK12316 720 SGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDE-DVASCTSLRRIVCSGEALPAD 785 (5163)
T ss_pred CCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcc-ccccCCCccEEEEeeccCCHH
Confidence 9999999752 8999999999999999999999999987642 223567899999999876543
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=316.22 Aligned_cols=296 Identities=19% Similarity=0.229 Sum_probs=229.7
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
....++|+++++.+|+++|+++.+...++.+.+||+||.++++++|++|+++|+++|++|+++++|++++++++|||+++
T Consensus 57 n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 136 (625)
T TIGR02188 57 NVSYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARI 136 (625)
T ss_pred EHHHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 35678888888899999999986532334578999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc-----------hhHHHhhcccCccEEEEecCcchHHHHHHhhCCc
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK-----------CNQIIDRAPRCLKKIISIREVRMATMQRARSRAI 231 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----------~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (391)
|++++|+++.++.+++.+++++++++++|+++... ....+...+..++.++.++....... ....
T Consensus 137 Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 212 (625)
T TIGR02188 137 GAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVP----WVEG 212 (625)
T ss_pred CCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcC----cccc
Confidence 99999999999999999999999999999987521 11112212113455666543211100 0001
Q ss_pred eEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHH-HHhhcCCCCCCCCEEEEcCChH
Q psy2417 232 EIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAA-LLQLSDHRPKYSDVLISFLPLA 310 (391)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~-~~~~~~~~~~~~d~~l~~~pl~ 310 (391)
....|+++...... ...+....++++++|+|||||||.||||+++|++++...... ...++ +.++|++++.+|++
T Consensus 213 ~~~~~~~~~~~~~~-~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~ 288 (625)
T TIGR02188 213 RDVWWHDLMAKASA-YCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFD---IKDGDIFWCTADVG 288 (625)
T ss_pred ccccHHHHHhhcCC-CCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccC---CCCCcEEEECCCch
Confidence 12345555543221 112334567899999999999999999999999987655433 33445 78899999999999
Q ss_pred HHHHHHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH---HHhcCchhHHHHHHHHH
Q psy2417 311 HMLERTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV---MAQIRPSFIKRLMFNMA 381 (391)
Q Consensus 311 h~~g~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~---~~~~~~~slr~~~~gga 381 (391)
|+++.... +.+|+.|++++++++ ++..+++.++++++|++.++|++++.|.+.. ..+.++++||.+++||+
T Consensus 289 ~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~ 368 (625)
T TIGR02188 289 WITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGE 368 (625)
T ss_pred hhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecC
Confidence 99987664 889999999999753 7899999999999999999999999998752 23456789999999998
Q ss_pred HHHHH
Q psy2417 382 MGSKE 386 (391)
Q Consensus 382 ~~~k~ 386 (391)
.....
T Consensus 369 ~l~~~ 373 (625)
T TIGR02188 369 PINPE 373 (625)
T ss_pred CCCHH
Confidence 76543
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=313.47 Aligned_cols=299 Identities=21% Similarity=0.234 Sum_probs=234.4
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecC--CCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNI--SRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~--~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
..|++++|++.++++|+++|+.+.... ....+++||+||.++++++|++|+++|+++|++|+++++|++++++++|||
T Consensus 24 ~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~ 103 (632)
T PRK07529 24 PASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGG 103 (632)
T ss_pred CCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 458999999999999999999875321 123578999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc----hhHH---HhhcccCccEEEEecCcchH--HHHHH----
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK----CNQI---IDRAPRCLKKIISIREVRMA--TMQRA---- 226 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~----~~~~---~~~~~~~l~~ii~~~~~~~~--~~~~~---- 226 (391)
+++| +++|+++.++++++.+++++++++++|++.... ...+ ....+ .++.++.++..... ...+.
T Consensus 104 ~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~ 181 (632)
T PRK07529 104 EAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALP-ELRTVVEVDLARYLPGPKRLAVPLI 181 (632)
T ss_pred HHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCC-cceeEEEecCccccccccccccccc
Confidence 9999 679999999999999999999999999986521 1122 22222 56667666542100 00000
Q ss_pred -hhCCceEEeHHHHHHhhhccC-CCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEE
Q psy2417 227 -RSRAIEIIRFDEIERVGAQKM-FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLI 304 (391)
Q Consensus 227 -~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l 304 (391)
...+..+..|++......... .......++++++|+|||||||.||||+++|++++++.......+. +.++|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~---~~~~d~~l 258 (632)
T PRK07529 182 RRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLG---LGPGDTVF 258 (632)
T ss_pred ccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcC---CCCCCEEE
Confidence 001223445665544322111 1122346799999999999999999999999999998877777776 78999999
Q ss_pred EcCChHHHHHHHHH-HHHHHhCcEEEEeCC----C---HHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHH
Q psy2417 305 SFLPLAHMLERTCE-SAMFLVGGSIGYYSG----D---IKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRL 376 (391)
Q Consensus 305 ~~~pl~h~~g~~~~-~~~L~~G~~vv~~~~----~---~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~ 376 (391)
+.+|++|.+++... +.+|..|+++++.+. + ...+++.++++++|++.++|+++..|.+......++++||.+
T Consensus 259 ~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~slr~v 338 (632)
T PRK07529 259 CGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVDGHDISSLRYA 338 (632)
T ss_pred EecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccCCCccceEEE
Confidence 99999999998866 899999999999753 2 357889999999999999999999998765445577899999
Q ss_pred HHHHHHHHH
Q psy2417 377 MFNMAMGSK 385 (391)
Q Consensus 377 ~~gga~~~k 385 (391)
++||+....
T Consensus 339 ~~gg~~l~~ 347 (632)
T PRK07529 339 LCGAAPLPV 347 (632)
T ss_pred EEcCCCCCH
Confidence 999987643
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=314.57 Aligned_cols=302 Identities=15% Similarity=0.158 Sum_probs=223.8
Q ss_pred CCCHHHHHHHHHHh--cCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 82 VKTLYDAFRKGAKE--SNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 82 ~~tl~~~l~~~~~~--~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
..+..++++++++. +|+++|+++....++..+.+||+||.++++++|.+|+++|+++||+|+|+++|++|+++++|||
T Consensus 58 ~n~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~ 137 (647)
T PTZ00237 58 LNTCYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSC 137 (647)
T ss_pred eeHHHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 34567888888765 7999999886421223478999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCc--------chhHHHhhcc--c-CccEEEEecCcch-HHHHH--
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDS--------KCNQIIDRAP--R-CLKKIISIREVRM-ATMQR-- 225 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~--------~~~~~~~~~~--~-~l~~ii~~~~~~~-~~~~~-- 225 (391)
+++|++++|+++.++.+++.+++++++++++|++... ..+.+.+... . ..+.++.+..... .....
T Consensus 138 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 217 (647)
T PTZ00237 138 ARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKK 217 (647)
T ss_pred HHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCccccccccc
Confidence 9999999999999999999999999999999997531 0111111111 0 2335554421110 00000
Q ss_pred -Hh-hCCceEEeHHHHHHhhhc----cCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhH-HHHHHHHHHHhhcCCCCC
Q psy2417 226 -AR-SRAIEIIRFDEIERVGAQ----KMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGN-VIAAISAALLQLSDHRPK 298 (391)
Q Consensus 226 -~~-~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~-l~~~~~~~~~~~~~~~~~ 298 (391)
.. ........|+++...... .........++++++|+|||||||.||||+++|++ +.+........+. ..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~---~~ 294 (647)
T PTZ00237 218 IETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIE---KD 294 (647)
T ss_pred ccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcC---CC
Confidence 00 000022456666543211 11112345689999999999999999999999998 4443333333344 67
Q ss_pred CCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCCC-------HHhHHHHHHhcCCcEEecChHHHHHHHHHH------H
Q psy2417 299 YSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGD-------IKNLTEDMKTLKPTIMPAVPRLLNRMYDKV------M 365 (391)
Q Consensus 299 ~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~~-------~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~------~ 365 (391)
.+|++++..|++|+++....+.+|+.|+++++++++ +..+++.+++++||++.++|++++.|.+.. .
T Consensus 295 ~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~ 374 (647)
T PTZ00237 295 IPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIR 374 (647)
T ss_pred CCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccc
Confidence 789999999999998776678999999999997652 578999999999999999999999998752 1
Q ss_pred HhcCchhHHHHHHHHHHHHHH
Q psy2417 366 AQIRPSFIKRLMFNMAMGSKE 386 (391)
Q Consensus 366 ~~~~~~slr~~~~gga~~~k~ 386 (391)
...++++||.+++||++....
T Consensus 375 ~~~~l~~Lr~i~~~G~~l~~~ 395 (647)
T PTZ00237 375 SKYDLSNLKEIWCGGEVIEES 395 (647)
T ss_pred cccCcchheEEEecCccCCHH
Confidence 345678999999999876543
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=369.59 Aligned_cols=329 Identities=15% Similarity=0.176 Sum_probs=256.5
Q ss_pred chhhhhccccchhhhhhhhccccccccc----------------CCCCccCccCccccc------CCCCCcceeccCCCC
Q psy2417 26 EQNLALVGTNETMRLRFYYQSDRSSNLR----------------GRGREVVRVSKFFSG------ASEGKFLSTLYDDVK 83 (391)
Q Consensus 26 ~l~~~~~~~~~~l~~~~~y~~~~~~~~~----------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 83 (391)
||++.+...++++.++|+|++++|++.+ ..+.......++... ...........+...
T Consensus 2109 dL~l~v~~~~~~l~l~~~y~~~lf~~~~i~~l~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 2188 (4334)
T PRK05691 2109 DLNLEVTDLDGRLGCCLTYSRDLFDEPRIARMAEHWQNLLEALLGDPQQRLAELPLLAAAEQQQLLDSLAGEAGEARLDQ 2188 (4334)
T ss_pred ceEEEEEecCCcEEEEEEECcccCCHHHHHHHHHHHHHHHHHHHhhhcCChhhccCCcHHHHHHHHHHhCCCCcCCCccc
Confidence 4888888888999999999999999876 111111111111100 000011111233456
Q ss_pred CHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcC
Q psy2417 84 TLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYS 163 (391)
Q Consensus 84 tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G 163 (391)
+++++|+++++++|+++|+.+.+ +.+||+||+++++++|++|.+.|+++|++|+++++|++++++++|||+++|
T Consensus 2189 ~l~~~~~~~a~~~p~~~Av~~~~------~~lTY~eL~~~~~~lA~~L~~~Gv~~g~~V~l~~~~s~~~vv~~lailkaG 2262 (4334)
T PRK05691 2189 TLHGLFAAQAARTPQAPALTFAG------QTLSYAELDARANRLARALRERGVGPQVRVGLALERSLEMVVGLLAILKAG 2262 (4334)
T ss_pred chHHHHHHHHHHCCCCeEEEeCC------eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 89999999999999999999876 789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhh
Q psy2417 164 MIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVG 243 (391)
Q Consensus 164 ~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 243 (391)
+++||+||.+|.+++.++++++++++++++... ...+ ......... +.++... ..+..
T Consensus 2263 ~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~-~~~~-~~~~~~~~~-~~~~~~~-----------------~~~~~-- 2320 (4334)
T PRK05691 2263 GAYVPLDPEYPLERLHYMIEDSGIGLLLSDRAL-FEAL-GELPAGVAR-WCLEDDA-----------------AALAA-- 2320 (4334)
T ss_pred cEeecCCCCChHHHHHHHHHhcCCCEEEeChhh-hhhh-cccccccee-EEeccch-----------------hhhhc--
Confidence 999999999999999999999999999998752 2111 111111111 1111100 00000
Q ss_pred hccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHH
Q psy2417 244 AQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFL 323 (391)
Q Consensus 244 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~ 323 (391)
......+....+++++||+|||||||.||||+++|+++.+.+.+....++ ++++|+++++.|++|+.++...+.+|+
T Consensus 2321 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKGV~~~h~~l~~~~~~~~~~~~---~~~~d~~l~~~~~~fd~~~~~i~~~L~ 2397 (4334)
T PRK05691 2321 YSDAPLPFLSLPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFG---MRADDCELHFYSINFDAASERLLVPLL 2397 (4334)
T ss_pred CCCCCCCCCCCCCCcEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcC---CCcccEEEEecCccHHHHHHHHHHHHh
Confidence 00111122245789999999999999999999999999999988888888 999999999999999999999999999
Q ss_pred hCcEEEEeCC---CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q psy2417 324 VGGSIGYYSG---DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 324 ~G~~vv~~~~---~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~k 385 (391)
.|+++++.+. ++..+.+.|+++++|++.++|++++.|.+.........++|.+++||+....
T Consensus 2398 ~G~~lvl~~~~~~~~~~l~~~i~~~~vt~~~~tPs~~~~l~~~~~~~~~~~~lr~i~~gGe~l~~ 2462 (4334)
T PRK05691 2398 CGARVVLRAQGQWGAEEICQLIREQQVSILGFTPSYGSQLAQWLAGQGEQLPVRMCITGGEALTG 2462 (4334)
T ss_pred CCCEEEECCcccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHHhhhccccCCCceEEEEccccCCH
Confidence 9999999753 7899999999999999999999999998765444455689999999987644
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=307.19 Aligned_cols=280 Identities=22% Similarity=0.237 Sum_probs=221.8
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.+.|.+.++++|+++|+.+.+. +.+||+||.++++++|++|.+. +|++|+|+++|+++|++++|||++
T Consensus 18 ~~~~~~~~~~~~~~~p~~~a~~~~~~-----~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~lA~~~ 89 (539)
T PRK06334 18 GKTVLESFLKLCSEMTTATVCWDEQL-----GKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYFATLL 89 (539)
T ss_pred CCcHHHHHHHHHHhCCCceEEEeCCC-----CcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHHHHHh
Confidence 46899999999999999999977553 5799999999999999999873 899999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc---CccEEEEecCcchHHHHHHhhCCceEEeHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR---CLKKIISIREVRMATMQRARSRAIEIIRFDE 238 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~---~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
+|+++||+++.++.+++.++++++++++++++.+. ...+.+.... ....++.++..... ..+.+
T Consensus 90 ~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~~~ 156 (539)
T PRK06334 90 SGKIPVMINWSQGLREVTACANLVGVTHVLTSKQL-MQHLAQTHGEDAEYPFSLIYMEEVRKE------------LSFWE 156 (539)
T ss_pred cCCeeEecCcccchHHHHHHHHHcCCCEEEehHHH-HHHHhhhhhccccccccEEEEehhhhh------------ccHHH
Confidence 99999999999999999999999999999998642 2222211110 01134444321100 01111
Q ss_pred HHHhhh----c-----cCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCCh
Q psy2417 239 IERVGA----Q-----KMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPL 309 (391)
Q Consensus 239 l~~~~~----~-----~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl 309 (391)
....+. . .........++++++|+|||||||.||||++||+++..........+. +..+|++++++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~---~~~~d~~l~~~p~ 233 (539)
T PRK06334 157 KCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFS---PKEDDVMMSFLPP 233 (539)
T ss_pred hhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcC---CCCCceEEEecch
Confidence 100000 0 000112346799999999999999999999999999998877777776 8899999999999
Q ss_pred HHHHHHHHH-HHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHH
Q psy2417 310 AHMLERTCE-SAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 310 ~h~~g~~~~-~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~k 385 (391)
+|.+|+... +.++..|+++++... ++..+++.|+++++|++.++|++++.|++.. ....++++||.+++||+....
T Consensus 234 ~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~ 313 (539)
T PRK06334 234 FHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKD 313 (539)
T ss_pred HhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCH
Confidence 999999765 889999999998753 8999999999999999999999999998764 344567899999999987543
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=306.15 Aligned_cols=287 Identities=20% Similarity=0.232 Sum_probs=232.5
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.++|++.++.+|+++|+++.+...+.++.+||+||.++++++|++|.+.|+++|++|+++++|++++++++|||++
T Consensus 23 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~ 102 (547)
T PRK13295 23 DRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSR 102 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 35899999999999999999988653233457999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc-------hhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEE
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK-------CNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-------~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (391)
+|++++|++|.++.+++.++++++++++++++.... ...+..... .++.++.++.... .
T Consensus 103 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------------~ 168 (547)
T PRK13295 103 IGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELP-ALRHVVVVGGDGA-------------D 168 (547)
T ss_pred cCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCC-CcceEEEecCCCc-------------c
Confidence 999999999999999999999999999999987521 111222222 4556666553211 1
Q ss_pred eHHHHHHhhh-------ccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcC
Q psy2417 235 RFDEIERVGA-------QKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFL 307 (391)
Q Consensus 235 ~~~~l~~~~~-------~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~ 307 (391)
.+.++..... ..........++++++|+|||||||.||||+++|++++..+......++ +.++|++++.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~---~~~~~~~l~~~ 245 (547)
T PRK13295 169 SFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLG---LGADDVILMAS 245 (547)
T ss_pred CHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhC---CCCCCeEEEec
Confidence 2333321110 0000112346789999999999999999999999999998888777777 88999999999
Q ss_pred ChHHHHHHHHH-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Q psy2417 308 PLAHMLERTCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 308 pl~h~~g~~~~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~ 384 (391)
|++|.+++... +.++..|+++++.+. ++..+++.++++++|++.++|.++..+.... ....++++||.+++||+...
T Consensus 246 p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~ 325 (547)
T PRK13295 246 PMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIP 325 (547)
T ss_pred CchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCC
Confidence 99999998765 889999999999776 8999999999999999999999999988763 33456778999999987664
Q ss_pred H
Q psy2417 385 K 385 (391)
Q Consensus 385 k 385 (391)
+
T Consensus 326 ~ 326 (547)
T PRK13295 326 G 326 (547)
T ss_pred H
Confidence 4
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=311.19 Aligned_cols=292 Identities=19% Similarity=0.221 Sum_probs=227.2
Q ss_pred HHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCC
Q psy2417 85 LYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSM 164 (391)
Q Consensus 85 l~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~ 164 (391)
..++|++.++.+|+++|+++.+..++..+.+||+||+++++++|++|.++|+++|++|+++++|++++++++|||+++|+
T Consensus 69 ~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 148 (637)
T PRK00174 69 SYNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGA 148 (637)
T ss_pred HHHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 46788888889999999998653223457899999999999999999999999999999999999999999999999999
Q ss_pred eEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc-----------hhHHHhhcccCccEEEEecCcchHHHHHHhhCCceE
Q psy2417 165 IIVALYDTLGPDACAFIINQAEISVLIVDDDSK-----------CNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEI 233 (391)
Q Consensus 165 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----------~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (391)
+++|+++.++.+++.+++++++++++|+++... ....+...+ .++.++.++...... .......
T Consensus 149 v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~ 223 (637)
T PRK00174 149 VHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCP-SVEKVIVVRRTGGDV----DWVEGRD 223 (637)
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCC-CccEEEEEcCCCCCc----CcCCCCc
Confidence 999999999999999999999999999976521 111111122 455666654321100 0001122
Q ss_pred EeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHH-HHHhhcCCCCCCCCEEEEcCChHHH
Q psy2417 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA-ALLQLSDHRPKYSDVLISFLPLAHM 312 (391)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~~~~d~~l~~~pl~h~ 312 (391)
..|+++..... ....+....++++++|+|||||||.||||+++|++++..... ....+. +.++|++++.+|++|+
T Consensus 224 ~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~ 299 (637)
T PRK00174 224 LWWHELVAGAS-DECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFD---YKDGDVYWCTADVGWV 299 (637)
T ss_pred ccHHHHHhhcC-CCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccC---CCCCcEEEEcCCchHh
Confidence 34566554221 112233456789999999999999999999999998765443 333345 7889999999999999
Q ss_pred HHHHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH---HhcCchhHHHHHHHHHHH
Q psy2417 313 LERTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM---AQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 313 ~g~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~---~~~~~~slr~~~~gga~~ 383 (391)
.+.... +.+|+.|+++++.++ ++..+++.|+++++|++.++|++++.|.+... ...++++||.+++||+..
T Consensus 300 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l 379 (637)
T PRK00174 300 TGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPI 379 (637)
T ss_pred hhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCC
Confidence 998755 889999999999753 78999999999999999999999999987522 235677999999998875
Q ss_pred HH
Q psy2417 384 SK 385 (391)
Q Consensus 384 ~k 385 (391)
..
T Consensus 380 ~~ 381 (637)
T PRK00174 380 NP 381 (637)
T ss_pred CH
Confidence 43
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=311.55 Aligned_cols=295 Identities=16% Similarity=0.121 Sum_probs=226.3
Q ss_pred HHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCC
Q psy2417 85 LYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSM 164 (391)
Q Consensus 85 l~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~ 164 (391)
.+++|+++++.+|+++|+++.+..++..+.+||+||.++++++|++|+++|+++|++|+++++|++++++++|||+++|+
T Consensus 55 ~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 134 (629)
T PRK10524 55 CHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGA 134 (629)
T ss_pred HHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 57889888888999999998542223457899999999999999999999999999999999999999999999999999
Q ss_pred eEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc-----------hhHHHhhcccCccEEEEecCcchHHHHHHhhCCceE
Q psy2417 165 IIVALYDTLGPDACAFIINQAEISVLIVDDDSK-----------CNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEI 233 (391)
Q Consensus 165 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----------~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (391)
+++|+++.++.+++.+++++++++++|+++... +...+.........++.++...... .......
T Consensus 135 v~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~~~~~~~ 210 (629)
T PRK10524 135 IHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM----ARVAGRD 210 (629)
T ss_pred EEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----CcccCCc
Confidence 999999999999999999999999999976411 1122222211344566655321100 0001112
Q ss_pred EeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHH-HHHhhcCCCCCCCCEEEEcCChHHH
Q psy2417 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA-ALLQLSDHRPKYSDVLISFLPLAHM 312 (391)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~~~~d~~l~~~pl~h~ 312 (391)
..++++.........+.....++++++|+|||||||.||||+++|++++..... ....++ +.++|++++.+|++|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~ 287 (629)
T PRK10524 211 VDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFG---GKAGETFFCASDIGWV 287 (629)
T ss_pred ccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcC---CCCCCEEEEcCCCCee
Confidence 345555432211111122246789999999999999999999999998655443 333455 7889999999999999
Q ss_pred HHHHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH---HHhcCchhHHHHHHHHHHH
Q psy2417 313 LERTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV---MAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 313 ~g~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~---~~~~~~~slr~~~~gga~~ 383 (391)
++.... +.+|+.|+++++.++ ++..+++.++++++|+++++|++++.+.+.. ....++++||.+++||+..
T Consensus 288 ~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l 367 (629)
T PRK10524 288 VGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPL 367 (629)
T ss_pred ccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCC
Confidence 887655 889999999998753 6889999999999999999999999887652 2345678999999999876
Q ss_pred HHH
Q psy2417 384 SKE 386 (391)
Q Consensus 384 ~k~ 386 (391)
.+.
T Consensus 368 ~~~ 370 (629)
T PRK10524 368 DEP 370 (629)
T ss_pred CHH
Confidence 543
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=309.95 Aligned_cols=299 Identities=17% Similarity=0.183 Sum_probs=226.1
Q ss_pred eeccCCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHH
Q psy2417 76 STLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIIT 155 (391)
Q Consensus 76 ~~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~ 155 (391)
.++.....++.+.+.++ .+|+++|+++.+. ++..+.+||+||.++++++|++|+++|+++|++|+|+++|+++++++
T Consensus 79 ~wf~~~~~n~~~~~~~~--~~~~~~Al~~~~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~ 155 (655)
T PRK03584 79 RWFPGARLNYAENLLRH--RRDDRPAIIFRGE-DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVA 155 (655)
T ss_pred eeCCCCEeeHHHHhhcc--CCCCCeEEEEECC-CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 44444445665555432 5899999998653 33457899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc-----------hhHHHhhcccCccEEEEecCcchHHHH
Q psy2417 156 EQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK-----------CNQIIDRAPRCLKKIISIREVRMATMQ 224 (391)
Q Consensus 156 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----------~~~~~~~~~~~l~~ii~~~~~~~~~~~ 224 (391)
+|||+++|++++|+++.++.+++.+++++++++++|+++... +..+....+ .++.++.++......
T Consensus 156 ~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~-- 232 (655)
T PRK03584 156 MLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP-SLEHVVVVPYLGPAA-- 232 (655)
T ss_pred HHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCC-CccEEEEEecCCCcc--
Confidence 999999999999999999999999999999999999976421 111222222 445566654321100
Q ss_pred HHhhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHH-HHHHHHhhcCCCCCCCCEE
Q psy2417 225 RARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAA-ISAALLQLSDHRPKYSDVL 303 (391)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~~~~d~~ 303 (391)
..........|+++................+++++|+|||||||.||||+++|++++.. .......+. +.++|++
T Consensus 233 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~---~~~~d~~ 308 (655)
T PRK03584 233 -AAAALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCD---LGPGDRF 308 (655)
T ss_pred -cccccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcC---CCCCCEE
Confidence 00011123456666542221111223446799999999999999999999999998644 444455555 8899999
Q ss_pred EEcCChHHHHHHHHHHHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH---HHhcCchhHHH
Q psy2417 304 ISFLPLAHMLERTCESAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV---MAQIRPSFIKR 375 (391)
Q Consensus 304 l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~---~~~~~~~slr~ 375 (391)
+++.++.|+++. ..+.+|+.|+++++.++ ++..+++.++++++|++..+|+++..+.+.. ....++++||.
T Consensus 309 ~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~ 387 (655)
T PRK03584 309 FWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRT 387 (655)
T ss_pred EEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEE
Confidence 999999998653 34789999999999753 7899999999999999999999999987642 23456789999
Q ss_pred HHHHHHHHHH
Q psy2417 376 LMFNMAMGSK 385 (391)
Q Consensus 376 ~~~gga~~~k 385 (391)
+++||++...
T Consensus 388 i~~~Ge~l~~ 397 (655)
T PRK03584 388 IGSTGSPLPP 397 (655)
T ss_pred EEEecCCCCH
Confidence 9999987644
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=297.71 Aligned_cols=265 Identities=21% Similarity=0.280 Sum_probs=221.3
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
.|+.+.|++++..+||++|+.+.+ +.+||+||.++++++|++|.+.|+++|++|+++++|++++++++|||+++
T Consensus 2 ~~~~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~ 75 (483)
T PRK03640 2 ETMPNWLKQRAFLTPDRTAIEFEE------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQL 75 (483)
T ss_pred CcHHHHHHHHHHhCCCceEEEeCC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhC
Confidence 589999999999999999999876 78999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHh
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERV 242 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (391)
|++++|+++.++.+++.++++++++++++++... ....... . ...++++...
T Consensus 76 G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~-~~~~~~~-~--------------------------~~~~~~~~~~ 127 (483)
T PRK03640 76 GAVAVLLNTRLSREELLWQLDDAEVKCLITDDDF-EAKLIPG-I--------------------------SVKFAELMNG 127 (483)
T ss_pred CcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchh-hHHHhhh-c--------------------------cccHHHHhhc
Confidence 9999999999999999999999999999998752 1111100 0 0113333322
Q ss_pred hhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHH
Q psy2417 243 GAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMF 322 (391)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L 322 (391)
............++++++|+|||||||.||||+++|.++...+......++ +.++|++++.+|++|++++...+.++
T Consensus 128 ~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~g~~~~~~~l 204 (483)
T PRK03640 128 PKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLG---LTEDDCWLAAVPIFHISGLSILMRSV 204 (483)
T ss_pred ccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcC---CCcCcEEEEecCHHHHHHHHHHHHHH
Confidence 111111122346789999999999999999999999999888777666666 88999999999999999998888999
Q ss_pred HhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy2417 323 LVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 323 ~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~ 384 (391)
..|+++++.+. ++..+++.++++++|++.++|+++..+.+.........++|.+++||+...
T Consensus 205 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~lr~~~~~g~~~~ 267 (483)
T PRK03640 205 IYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEGTYPSSFRCMLLGGGPAP 267 (483)
T ss_pred hcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCccccCCcceEEEEcCCCCC
Confidence 99999999876 999999999999999999999999999865332233358888888886653
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=299.45 Aligned_cols=291 Identities=20% Similarity=0.251 Sum_probs=233.2
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGL-GVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
..|+.++|.+.++.+|+++|+.+.+ +.+||+||.++++++|.+|.+. |+++|++|+|+++|+++++++++||+
T Consensus 9 ~~tl~~~l~~~a~~~~~~~a~~~~~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~ 82 (546)
T PRK08314 9 ETSLFHNLEVSARRYPDKTAIVFYG------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAIL 82 (546)
T ss_pred CCCHHHHHHHHHHHcCCCcceeecC------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHH
Confidence 4589999999999999999999877 6899999999999999999999 99999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc-CccEEEEecCcch--H-----HHHHH------
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR-CLKKIISIREVRM--A-----TMQRA------ 226 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~--~-----~~~~~------ 226 (391)
++|++++|++|.++.+++.++++++++++++++... ...+...... .++.++..+.... . ...+.
T Consensus 83 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (546)
T PRK08314 83 RANAVVVPVNPMNREEELAHYVTDSGARVAIVGSEL-APKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPL 161 (546)
T ss_pred HcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccch-hhhHHHHhhccCcceEEEecchhhcccccccCccccccccccc
Confidence 999999999999999999999999999999998763 2333222111 2334443321000 0 00000
Q ss_pred -hhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEE
Q psy2417 227 -RSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLIS 305 (391)
Q Consensus 227 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~ 305 (391)
...+..+..|++...... ........++++++|+|||||||.||||+++|+++++.+......+. +..+|++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~---~~~~d~~l~ 236 (546)
T PRK08314 162 QALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSN---STPESVVLA 236 (546)
T ss_pred ccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhC---CCCCceEEE
Confidence 001123345555543321 11223456789999999999999999999999999999888777777 889999999
Q ss_pred cCChHHHHHHHHH-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHH
Q psy2417 306 FLPLAHMLERTCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAM 382 (391)
Q Consensus 306 ~~pl~h~~g~~~~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~ 382 (391)
.+|++|.+|+... +.++..|+++++.+. ++..+++.++++++|++.++|.++..+.... ....+++++|.+++||+.
T Consensus 237 ~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~ 316 (546)
T PRK08314 237 VLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAA 316 (546)
T ss_pred EcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeecccc
Confidence 9999999998766 789999999999876 8999999999999999999999999887652 234567799999999976
Q ss_pred HH
Q psy2417 383 GS 384 (391)
Q Consensus 383 ~~ 384 (391)
..
T Consensus 317 ~~ 318 (546)
T PRK08314 317 MP 318 (546)
T ss_pred CC
Confidence 54
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=298.81 Aligned_cols=284 Identities=22% Similarity=0.284 Sum_probs=233.6
Q ss_pred CHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcC
Q psy2417 84 TLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYS 163 (391)
Q Consensus 84 tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G 163 (391)
+++++|++.++.+|+++|+.+.+ +++||+||.++++++|.+|++.|+++|++|+++++|+++++++++||+++|
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G 74 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHHD------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAG 74 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEECC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Confidence 47899999999999999999876 689999999999999999999999999999999999999999999999999
Q ss_pred CeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEeHHHHHH
Q psy2417 164 MIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIRFDEIER 241 (391)
Q Consensus 164 ~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (391)
++++|+++.++.+++..+++++++++++++... ...+...... .+..++.++..... .........|+++..
T Consensus 75 ~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 148 (515)
T TIGR03098 75 GVFVPINPLLKAEQVAHILADCNVRLLVTSSER-LDLLHPALPGCHDLRTLILVGEPAHA-----SEGGGESPSWPKLLA 148 (515)
T ss_pred EEEEeCCCCCCHHHHHHHHHcCCCeEEEEccch-hhhhHhhhhcccccceEEEecCcccc-----cCCccccccHHHhhc
Confidence 999999999999999999999999999998753 3322222211 44556666543211 011223445666554
Q ss_pred hhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHH
Q psy2417 242 VGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM 321 (391)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~ 321 (391)
..... .+.+...+++++|+|||||||.||||++||+++...+......+. +..+|++++.+|++|++++...+.+
T Consensus 149 ~~~~~--~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~~~~~~~~~ 223 (515)
T TIGR03098 149 LGDAD--PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLE---NRPDDRLLAVLPLSFDYGFNQLTTA 223 (515)
T ss_pred ccccc--ccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhC---CCcccEEEEECchhhHhHHHHHHHH
Confidence 32211 223345688999999999999999999999999998888877776 8899999999999999999888999
Q ss_pred HHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy2417 322 FLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 322 L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~ 384 (391)
+..|+++++.+. ++..+.+.++++++|++.++|+++..+.+......+++++|.+++||+...
T Consensus 224 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~~~~~g~~l~ 287 (515)
T TIGR03098 224 FYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPESAAPSLRYLTNSGGAMP 287 (515)
T ss_pred HHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccCCCCccceEEEEecCCcCC
Confidence 999999999876 899999999999999999999999998765333345678898888887654
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >KOG1176|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=295.81 Aligned_cols=283 Identities=23% Similarity=0.278 Sum_probs=221.6
Q ss_pred hcCCC-ceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCC--CCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccC
Q psy2417 95 ESNNG-RCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLG--VNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYD 171 (391)
Q Consensus 95 ~~pd~-~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g--v~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~ 171 (391)
.++++ +++++.... .+.+||+|+..++.++|.+|.++| +++||+|++++||+++++.+++||++.|++..|++|
T Consensus 28 ~~~~~~~~~i~~~~~---g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np 104 (537)
T KOG1176|consen 28 VYLDRNTSLVYQDSD---GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNP 104 (537)
T ss_pred ccccCcceEEEecCC---CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCc
Confidence 33444 677766521 379999999999999999999876 888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEe-HHHHHHhhhccCCCC
Q psy2417 172 TLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIR-FDEIERVGAQKMFEE 250 (391)
Q Consensus 172 ~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 250 (391)
.+.+.++.+.+++++++++|++... ...+.+........++++........ ......... +.++...+.... .
T Consensus 105 ~~~~~ei~~~~~~s~~kiif~d~~~-~~~i~~~~~~~~~~i~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~ 178 (537)
T KOG1176|consen 105 RLTASEIAKQLKDSKPKLIFVDEDF-YDKISEATSKLALKIIVLTGDEGVIS---ISDLVEDLDAFEDLMPEGLPDG--I 178 (537)
T ss_pred ccCHHHHHHHHHhcCCeEEEEcCch-HHHHHHHHhhcCCceEEEecccCccc---cccccccccchhhccccCCCcc--c
Confidence 9999999999999999999999973 44443333321145555554310000 000011111 333333222221 3
Q ss_pred CCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHH-HHHhCcEEE
Q psy2417 251 VPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESA-MFLVGGSIG 329 (391)
Q Consensus 251 ~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~-~L~~G~~vv 329 (391)
.+...+|++.|+|||||||.||||++||++++.+.......+. +...|+.++.+|++|.+|+...+. .+..|++++
T Consensus 179 ~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~---~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii 255 (537)
T KOG1176|consen 179 RPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWE---LTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTII 255 (537)
T ss_pred ccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhccc---CCCCceEEEechHHHHhHHHHHHHHHHhCCceEE
Confidence 4456799999999999999999999999999999877766666 778999999999999999999966 555566666
Q ss_pred EeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHH-HHHhcCchhHHHHHHHHHHHHHHHhh
Q psy2417 330 YYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK-VMAQIRPSFIKRLMFNMAMGSKENEI 389 (391)
Q Consensus 330 ~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~-~~~~~~~~slr~~~~gga~~~k~~~~ 389 (391)
+.+. ++..+++.|++|++|+++++|.++..|++. ...+.+++++|.+++|||...+....
T Consensus 256 ~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~ 317 (537)
T KOG1176|consen 256 CLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLE 317 (537)
T ss_pred ECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHH
Confidence 6666 999999999999999999999999999998 46778999999999999988776544
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=305.73 Aligned_cols=300 Identities=13% Similarity=0.136 Sum_probs=221.5
Q ss_pred eeccCCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHH
Q psy2417 76 STLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIIT 155 (391)
Q Consensus 76 ~~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~ 155 (391)
.+......++.+.+.+ +.++++|+++.+. ++..+.+||+||.++++++|++|+++|+++||+|+|+++|+++++++
T Consensus 80 ~wf~~~~~n~~~~~~~---~~~~~~a~~~~~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~ 155 (652)
T TIGR01217 80 QWFPGARLNYAENLLR---AAGTEPALLYVDE-THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVA 155 (652)
T ss_pred EECCCCeeeHHHHHhc---cCCCCeEEEEECC-CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 3443444455554443 3578999988653 33457899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc--------hhHHH---hhcccCccEEEEecCcchHHHH
Q psy2417 156 EQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK--------CNQII---DRAPRCLKKIISIREVRMATMQ 224 (391)
Q Consensus 156 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--------~~~~~---~~~~~~l~~ii~~~~~~~~~~~ 224 (391)
+|||+++|++++|+++.++.+++.+++++++++++|+++... ...+. ...+ .++.++.++........
T Consensus 156 ~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ 234 (652)
T TIGR01217 156 MLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELP-TLRAVVHIPYLGPRETE 234 (652)
T ss_pred HHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCC-CccEEEEEeCCCCcccc
Confidence 999999999999999999999999999999999999976421 12222 2222 45666665432100000
Q ss_pred HHhhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHH-HHHHHHHhhcCCCCCCCCEE
Q psy2417 225 RARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA-AISAALLQLSDHRPKYSDVL 303 (391)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~~~~d~~ 303 (391)
.........|+++................+++++|+|||||||.||||+++|++++. ........++ +.++|++
T Consensus 235 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~---~~~~d~~ 309 (652)
T TIGR01217 235 --APKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCD---LGPGDRL 309 (652)
T ss_pred --cccccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccC---CCCCcEE
Confidence 000012345777654321111112334568999999999999999999999999764 3444444455 8899999
Q ss_pred EEcCChHHHHHHHHHHHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHH---HHHhcCchhHHH
Q psy2417 304 ISFLPLAHMLERTCESAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK---VMAQIRPSFIKR 375 (391)
Q Consensus 304 l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~---~~~~~~~~slr~ 375 (391)
++++|++|+++. ..+.+|+.|++++++++ ++..+++.++++++|++..+|.++..+... .....++++||.
T Consensus 310 ~~~~~~~~~~~~-~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~ 388 (652)
T TIGR01217 310 FYYTTTGWMMWN-WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQC 388 (652)
T ss_pred EEeCCcchhhhH-HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeE
Confidence 999999998643 34689999999999853 678999999999999998888887776543 123457889999
Q ss_pred HHHHHHHHHHH
Q psy2417 376 LMFNMAMGSKE 386 (391)
Q Consensus 376 ~~~gga~~~k~ 386 (391)
+++||++....
T Consensus 389 i~~gGe~l~~~ 399 (652)
T TIGR01217 389 VASTGSPLPPD 399 (652)
T ss_pred EEeecCCCCHH
Confidence 99999876544
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=294.10 Aligned_cols=272 Identities=26% Similarity=0.337 Sum_probs=211.4
Q ss_pred HHHHHHhcCCCceEEE-eecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEE
Q psy2417 89 FRKGAKESNNGRCLGW-RQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIV 167 (391)
Q Consensus 89 l~~~~~~~pd~~al~~-~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~v 167 (391)
|+++++++||++|+++ .+ +++||+||+++++++|.+|.++|+++|++|+|+++|+++++++++||+++|++++
T Consensus 1 f~~~a~~~pd~~a~~~~~~------~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v 74 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDDEG------RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPV 74 (417)
T ss_dssp HHHHHHHSTTSEEEEETTT------EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEE
T ss_pred ChhHHhhCCCceEEEECCC------EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccc
Confidence 7899999999999999 44 8999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCHHHHHHHHHhcCccEEEE----cCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEeHHHHHH
Q psy2417 168 ALYDTLGPDACAFIINQAEISVLIV----DDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIRFDEIER 241 (391)
Q Consensus 168 pl~~~~~~~~l~~il~~~~~~~vi~----~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (391)
|++|.++.+++.+++++++++++|+ +... ...+...... ....++.++..... ..+.+..
T Consensus 75 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 140 (417)
T PF00501_consen 75 PLDPSLSEDELRHILRQSGPKVIITSEAVDSEP-LKKLKSIFKQEDPSSSIIILDRDDLP-------------KKEALKS 140 (417)
T ss_dssp EEETTSSHHHHHHHHHHHTESEEEECHHHSCHH-HHHHHHHHTTSTTTEEEEEESHSSCT-------------TCHHHHH
T ss_pred ccccccccccccccccccceeEEEEeccccccc-cccchhhhcccccccccccccccccc-------------ccccccc
Confidence 9999999999999999999999997 2221 2223332221 33456666532211 0001111
Q ss_pred hhhccCCCCCC-CCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHH--HhhcCCCCCCCCEEEEcCChHHHHHH-HH
Q psy2417 242 VGAQKMFEEVP-PKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAAL--LQLSDHRPKYSDVLISFLPLAHMLER-TC 317 (391)
Q Consensus 242 ~~~~~~~~~~~-~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~--~~~~~~~~~~~d~~l~~~pl~h~~g~-~~ 317 (391)
........ .+ ..++++++|+|||||||.||+|.++|+++++.+.... ..++ ++ |++++++|++|++|+ ..
T Consensus 141 ~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~---~~--d~~l~~~p~~~~~g~~~~ 214 (417)
T PF00501_consen 141 ASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFG---LG--DRILSFLPLSHIFGLISA 214 (417)
T ss_dssp HHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTT---TT--TEEEESS-TTSHHHHHHH
T ss_pred cccccccc-cCCCCccceeEeeccccccccccccccccccccccccccccccccc---cC--ceEEeecccccccccccc
Confidence 11000000 00 0579999999999999999999999999999987764 2222 33 699999999999999 56
Q ss_pred HHHHHHhCcEEEEeCC-C---HHhHHHHHHhcCCcEEecChHHHHHHHHHHHH-----hcCchhHHHHHHHHHHHHHH
Q psy2417 318 ESAMFLVGGSIGYYSG-D---IKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMA-----QIRPSFIKRLMFNMAMGSKE 386 (391)
Q Consensus 318 ~~~~L~~G~~vv~~~~-~---~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~-----~~~~~slr~~~~gga~~~k~ 386 (391)
.+.++..|+++++++. + +..+++.+++++||+++++|++++.+.+.... ..++++||.+++||+...+.
T Consensus 215 ~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~ 292 (417)
T PF00501_consen 215 LLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPD 292 (417)
T ss_dssp HHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHH
T ss_pred ccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChh
Confidence 6999999999999986 2 46789999999999999999999999885322 24777899998888877554
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=297.67 Aligned_cols=285 Identities=23% Similarity=0.303 Sum_probs=228.7
Q ss_pred cCCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHH
Q psy2417 79 YDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQG 158 (391)
Q Consensus 79 ~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA 158 (391)
.+...++.+++.++++++|+++|+.+.+. .+++||+||.++++++|++|.+.|+++|++|+++++|+++|+++++|
T Consensus 19 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~----~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la 94 (537)
T PLN02246 19 IPNHLPLHDYCFERLSEFSDRPCLIDGAT----GRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLG 94 (537)
T ss_pred CCCCCcHHHHHHHHHHhCCCCeEEEecCC----CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHH
Confidence 35566899999999999999999986531 26899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHH
Q psy2417 159 AYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDE 238 (391)
Q Consensus 159 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
|+++|++++|++|.++.+++..+++++++++++++... ...+..........++.++... .....+.+
T Consensus 95 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~-~~~~~~~~~~~~~~~i~~~~~~-----------~~~~~~~~ 162 (537)
T PLN02246 95 ASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCY-VDKLKGLAEDDGVTVVTIDDPP-----------EGCLHFSE 162 (537)
T ss_pred HHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccch-HHHHHHHhhcCCceEEEeCCCC-----------CCceeHHH
Confidence 99999999999999999999999999999999998753 3322222111112455554321 11234444
Q ss_pred HHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHH----hhcCCCCCCCCEEEEcCChHHHHH
Q psy2417 239 IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALL----QLSDHRPKYSDVLISFLPLAHMLE 314 (391)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~~~~d~~l~~~pl~h~~g 314 (391)
+...... ..+.....++++++|+|||||||.||||+++|+++...+..... .+. +..+|++++.+|++|+++
T Consensus 163 ~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~---~~~~d~~l~~~pl~~~~~ 238 (537)
T PLN02246 163 LTQADEN-ELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY---FHSDDVILCVLPMFHIYS 238 (537)
T ss_pred HhcCCCC-CCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccC---CCCCcEEEEeechHHHHH
Confidence 4332111 11223346789999999999999999999999999988765543 234 789999999999999999
Q ss_pred HHHH-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q psy2417 315 RTCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 315 ~~~~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~ 383 (391)
+... +.++..|+++++.+. ++..+++.++++++|++.++|.++..|.+.. ....+++++|.+++||+..
T Consensus 239 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l 310 (537)
T PLN02246 239 LNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPL 310 (537)
T ss_pred HHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcC
Confidence 8766 688999999999876 8999999999999999999999999987653 2344567899999988865
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=301.36 Aligned_cols=287 Identities=19% Similarity=0.223 Sum_probs=230.4
Q ss_pred CCHHHHHHHHHH-hcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 83 KTLYDAFRKGAK-ESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 83 ~tl~~~l~~~~~-~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..+++++++++. .+|+++|+.+.+. ...+.+||+||.++++++|.+|.++|+++|++|+++++|++++++++|||++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~ 120 (570)
T PRK04319 43 NIAYEAIDRHADGGRKDKVALRYLDA--SRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALK 120 (570)
T ss_pred eHHHHHHHHhhccCCCCceEEEEECC--CCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 445678888877 4799999988652 1347899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHH-hhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQII-DRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~-~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (391)
+|++++|+++.++++++.++++++++++++++... ..... ...+ .++.++.++.... .......+.++.
T Consensus 121 ~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~ 190 (570)
T PRK04319 121 NGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPAL-LERKPADDLP-SLKHVLLVGEDVE--------EGPGTLDFNALM 190 (570)
T ss_pred cCcEEcccccccCHHHHHHHHHccCCcEEEEChhh-hhccchhcCC-CceEEEEECCCcC--------CCcCccCHHHHH
Confidence 99999999999999999999999999999998753 22111 1112 4556666654221 011234565554
Q ss_pred HhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-H
Q psy2417 241 RVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE-S 319 (391)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~-~ 319 (391)
...... .......++++++|+|||||||.||||+++|+++++.+......+. +.++|++++..|+.|.+|.... +
T Consensus 191 ~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~g~~~~~~ 266 (570)
T PRK04319 191 EQASDE-FDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLD---LHEDDVYWCTADPGWVTGTSYGIF 266 (570)
T ss_pred hhcCCc-CCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcC---CCCCceEEecCChHHhhCchHHHH
Confidence 432221 1223346789999999999999999999999999988877777776 8899999999999999987665 8
Q ss_pred HHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHH---HHhcCchhHHHHHHHHHHHHH
Q psy2417 320 AMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV---MAQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 320 ~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~---~~~~~~~slr~~~~gga~~~k 385 (391)
.++..|+++++... ++..+++.++++++|+++++|++++.+.+.. ....++++||.+++||+....
T Consensus 267 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~ 337 (570)
T PRK04319 267 APWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNP 337 (570)
T ss_pred HHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCH
Confidence 99999999999754 8999999999999999999999999998642 234567799999999976543
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=299.33 Aligned_cols=295 Identities=19% Similarity=0.295 Sum_probs=232.3
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLG-LGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
...|+.++|++.+..+|+++|+.+.+ .+++.+||+||.++++++|++|.+ .|+++|++|+++++|+++++++++||
T Consensus 8 ~~~~~~~~l~~~a~~~~~~~a~~~~~---~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~ 84 (576)
T PRK05620 8 VPLSLTRILEYGSTVHGDTTVTTWGG---AEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAV 84 (576)
T ss_pred CCCcHHHHHHHHHHhCCCceEEEEcC---CceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 34689999999999999999998743 235899999999999999999996 79999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHH---HhhcccCccEEEEecCcchHHHHHHhhCCceEEeH
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQI---IDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~---~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (391)
+++|++++|++|.++.+++.++++.++++++|++... ...+ ..... .++.++.++................+.+|
T Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (576)
T PRK05620 85 ACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRL-AEQLGEILKECP-CVRAVVFIGPSDADSAAAHMPEGIKVYSY 162 (576)
T ss_pred HhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhh-HHHHHHHHhhCc-cccEEEEecCcccccchhccccccccccH
Confidence 9999999999999999999999999999999998752 2222 22222 45556665532211100111123445678
Q ss_pred HHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHH--HHhhcCCCCCCCCEEEEcCChHHHHH
Q psy2417 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAA--LLQLSDHRPKYSDVLISFLPLAHMLE 314 (391)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~~~d~~l~~~pl~h~~g 314 (391)
+++....... .......++++++|+|||||||.||||+++|+++....... ...+. +..+|++++.+|++|+++
T Consensus 163 ~~l~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~pl~h~~g 238 (576)
T PRK05620 163 EALLDGRSTV-YDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLA---VTHGESFLCCVPIYHVLS 238 (576)
T ss_pred HHHhhcCCCc-CCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcC---CCCCCeEEEeCChHHhhh
Confidence 8877533221 11233467899999999999999999999999987654432 22344 788999999999999999
Q ss_pred HHHHHHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Q psy2417 315 RTCESAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 315 ~~~~~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~ 384 (391)
+...+.++..|+++++... ++..+++.++++++|++..+|+++..++... ....+..++|.+++||+..+
T Consensus 239 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~ 311 (576)
T PRK05620 239 WGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVP 311 (576)
T ss_pred hHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCC
Confidence 9888899999999998753 8999999999999999999999999988753 23334457888888887543
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=296.81 Aligned_cols=279 Identities=15% Similarity=0.118 Sum_probs=225.8
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.++|.+.++++||++|+.+.+ +.+||+||+++++++|++|.++|+++|++|+++++|+++|+++++||++
T Consensus 42 ~~~~~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~ 115 (537)
T PRK13382 42 GMGPTSGFAIAAQRCPDRPGLIDEL------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANR 115 (537)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEeCC------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHH
Confidence 3579999999999999999999765 6899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEeHHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIRFDEI 239 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (391)
+|+++||+++.++.+++.+++++++++++|++... ...+...... ....++.++... ....++++
T Consensus 116 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 182 (537)
T PRK13382 116 IGADILLLNTSFAGPALAEVVTREGVDTVIYDEEF-SATVDRALADCPQATRIVAWTDED------------HDLTVEVL 182 (537)
T ss_pred cCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhh-HHHHHHHHhhccccceEEEecCCc------------ccccHHHH
Confidence 99999999999999999999999999999998752 2222211110 222333332210 01234444
Q ss_pred HHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHH
Q psy2417 240 ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCES 319 (391)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 319 (391)
...... ......+++.++++|||||||.||||+++|+++..........+. +..+++++..+|++|.+|+...+
T Consensus 183 ~~~~~~---~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~---~~~~~~~l~~~p~~~~~g~~~~~ 256 (537)
T PRK13382 183 IAAHAG---QRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTP---WRAEEPTVIVAPMFHAWGFSQLV 256 (537)
T ss_pred hhccCc---CCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhC---CCCCCeEEEecChHhhhHHHHHH
Confidence 332111 111235688999999999999999999999999988877777776 78899999999999999997779
Q ss_pred HHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH---HhcCchhHHHHHHHHHHHHH
Q psy2417 320 AMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM---AQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 320 ~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~---~~~~~~slr~~~~gga~~~k 385 (391)
.++..|+++++.+. ++..+++.++++++|++..+|+++..+.+... ...+.+++|.+++||+...+
T Consensus 257 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~ 326 (537)
T PRK13382 257 LAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRP 326 (537)
T ss_pred HHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCH
Confidence 99999999998765 89999999999999999999999999876421 23345689999999876654
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=298.59 Aligned_cols=282 Identities=17% Similarity=0.193 Sum_probs=219.9
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCC----CCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHH
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNIS----RPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQG 158 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~----~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA 158 (391)
.++.++|++.++++|+++|+.+.+..+ ..++.+||+||.++++++|++|.+.|+++|++|+++++|+++++++++|
T Consensus 6 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la 85 (552)
T PRK09274 6 ANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFA 85 (552)
T ss_pred hhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHH
Confidence 478899999999999999998865211 1234899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhH-HHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHH
Q psy2417 159 AYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQ-IIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFD 237 (391)
Q Consensus 159 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~-~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (391)
|+++|++++|++|.++.+++.+++++++++++|++....... +........+.++.++... ......++
T Consensus 86 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~~~~ 155 (552)
T PRK09274 86 LFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGGRL----------LWGGTTLA 155 (552)
T ss_pred HHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheecccccc----------ccCCccHH
Confidence 999999999999999999999999999999999975321211 1111111233344333210 00112344
Q ss_pred HHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHH
Q psy2417 238 EIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTC 317 (391)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 317 (391)
++...............++++++|+|||||||.||||+++|+++.+.+......++ +.++|+.++.+|++|.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~---~~~~~~~~~~~pl~~~~~--- 229 (552)
T PRK09274 156 TLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYG---IEPGEIDLPTFPLFALFG--- 229 (552)
T ss_pred HhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhC---CCCCceeeeccCHHHhhh---
Confidence 44311111111223346789999999999999999999999999999888888777 889999999999988654
Q ss_pred HHHHHHhCcEEEEeC--------CCHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHHH
Q psy2417 318 ESAMFLVGGSIGYYS--------GDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 318 ~~~~L~~G~~vv~~~--------~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~~ 384 (391)
+..|+++++.+ .++..+++.|+++++|+++++|++++.|.+... ...++++||.+++||+...
T Consensus 230 ----~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~ 301 (552)
T PRK09274 230 ----PALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVP 301 (552)
T ss_pred ----hhhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCC
Confidence 34688888753 278999999999999999999999999988743 4567889999999998653
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=293.02 Aligned_cols=286 Identities=21% Similarity=0.299 Sum_probs=235.6
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.+.|++.++.+|+++|+.+.+ +.+||+||++++.++|..|.+.|+++|++|+++++|+++++++++||++
T Consensus 4 ~~~i~~~l~~~~~~~~~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~ 77 (513)
T PRK07656 4 WMTLPELLARAARRFGDKEAYVFGD------QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALK 77 (513)
T ss_pred cccHHHHHHHHHHHCCCCeEEEeCC------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 4689999999999999999999976 7899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcc--cCccEEEEecCcchHHHHHHhhCCceEEeHHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAP--RCLKKIISIREVRMATMQRARSRAIEIIRFDEI 239 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~--~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (391)
+|++++|+++.++.+++.++++++++++++++... ......... ..++.++........ ........|+++
T Consensus 78 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 150 (513)
T PRK07656 78 AGAVVVPLNTRYTADEAAYILARGDAKALFVLGLF-LGVDYSATTRLPALEHVVICETEEDD------PHTEKMKTFTDF 150 (513)
T ss_pred cCeEEEecCcccCHHHHHHHHhhcCceEEEEchhh-HHHHHHHHhccCCccEEEEEcCcccc------cCccccccHHHH
Confidence 99999999999999999999999999999998763 222221111 144555554432211 001123466666
Q ss_pred HHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-
Q psy2417 240 ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE- 318 (391)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~- 318 (391)
...... .....+..++++++|+|||||||.||||.++|+++.+.+......++ +..+|++++.+|++|.+++...
T Consensus 151 ~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 226 (513)
T PRK07656 151 LAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLG---LTEGDRYLAANPFFHVFGYKAGV 226 (513)
T ss_pred HhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhC---CCCCCeEEEccchHHHHHHHHHH
Confidence 543322 11233457889999999999999999999999999998888888777 8999999999999999998876
Q ss_pred HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHHH
Q psy2417 319 SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 319 ~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~~ 384 (391)
+.++..|+++++.+. ++..+++.++++++|++.++|.++..+.+... ...+++++|.+++||+...
T Consensus 227 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~ 294 (513)
T PRK07656 227 NAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMP 294 (513)
T ss_pred HHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCC
Confidence 889999999998765 89999999999999999999999999987632 3346679999999998653
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=293.13 Aligned_cols=287 Identities=22% Similarity=0.291 Sum_probs=238.1
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
...++.++|+++++.+|+++|+.+.+ +.+||+||+++++++|+.|.+.|+++|++|+++++|+++++++++||+
T Consensus 4 ~~~~l~~~l~~~~~~~p~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~ 77 (521)
T PRK06187 4 YPLTIGRILRHGARKHPDKEAVYFDG------RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVP 77 (521)
T ss_pred ccCCHHHHHHHHHHHCCCceEEEeCC------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 45689999999999999999999887 569999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc--hhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHH
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK--CNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDE 238 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
++|++++|+++.++.+++..+++.+++++++++.... +..+....+ .++.++.++..... ........+.+
T Consensus 78 ~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~ 150 (521)
T PRK06187 78 KIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLP-TVRTVIVEGDGPAA------PLAPEVGEYEE 150 (521)
T ss_pred HcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccC-CccEEEEecCcccc------ccccccccHHH
Confidence 9999999999999999999999999999999988621 122222222 45566666553211 11223445555
Q ss_pred HHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH
Q psy2417 239 IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE 318 (391)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 318 (391)
+........ ......++++++++|||||||.||+|.++|.++.+........++ +..+|++++.+|++|.+++...
T Consensus 151 ~~~~~~~~~-~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~ 226 (521)
T PRK06187 151 LLAAASDTF-DFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLK---LSRDDVYLVIVPMFHVHAWGLP 226 (521)
T ss_pred HhhcCCccC-CCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhC---CCCCCEEEEeCCchHHhhHHHH
Confidence 544322211 123446788999999999999999999999999998888877777 8999999999999999999888
Q ss_pred HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHHH
Q psy2417 319 SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 319 ~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~~ 384 (391)
+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+... ...+++++|.+++||+...
T Consensus 227 ~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~ 294 (521)
T PRK06187 227 YLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALP 294 (521)
T ss_pred HHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCC
Confidence 779999999999876 89999999999999999999999999987643 3556779999999887653
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=294.41 Aligned_cols=287 Identities=19% Similarity=0.227 Sum_probs=228.9
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.++|++.++.+|+++|+...+...+..+.+||+||+++++++|.+|.+.|+++|++|+++++|+++++++++||++
T Consensus 21 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~ 100 (538)
T TIGR03208 21 DRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACAR 100 (538)
T ss_pred cCcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 35899999999999999999987432122347899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc----hh---HHHhhcccCccEEEEecCcchHHHHHHhhCCceEE
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK----CN---QIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~----~~---~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (391)
+|+++||++|.++.+++.++++.+++++++++.... .. .+....+ ..+.++.++.... .
T Consensus 101 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------------~ 166 (538)
T TIGR03208 101 IGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLP-ALRQVVVIDGDGD-------------D 166 (538)
T ss_pred cCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCC-cceEEEEecCCCC-------------c
Confidence 999999999999999999999999999999987521 01 1111111 3445555543211 1
Q ss_pred eHHHHHHhhhccC-------CCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcC
Q psy2417 235 RFDEIERVGAQKM-------FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFL 307 (391)
Q Consensus 235 ~~~~l~~~~~~~~-------~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~ 307 (391)
.++++........ .......++++++|+|||||||.||||+++|+++...+......++ +..+|++++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~---~~~~d~~l~~~ 243 (538)
T TIGR03208 167 SFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLE---LGGGDVILMAS 243 (538)
T ss_pred CHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcC---CCCCCeEEEeC
Confidence 2222221111000 0112346789999999999999999999999999999888887777 88899999999
Q ss_pred ChHHHHHHHHH-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHHH
Q psy2417 308 PLAHMLERTCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 308 pl~h~~g~~~~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~~ 384 (391)
|++|.+|+... +.+++.|+++++.+. ++..+++.++++++|++.++|.++..+..... ...+++++|.+++||+..+
T Consensus 244 pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~ 323 (538)
T TIGR03208 244 PMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIP 323 (538)
T ss_pred CchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCC
Confidence 99999998765 889999999998765 89999999999999999999999998876532 3346678999999987654
Q ss_pred H
Q psy2417 385 K 385 (391)
Q Consensus 385 k 385 (391)
.
T Consensus 324 ~ 324 (538)
T TIGR03208 324 G 324 (538)
T ss_pred H
Confidence 3
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=298.42 Aligned_cols=286 Identities=16% Similarity=0.168 Sum_probs=219.2
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
.|+.++|++.++.+|+++|+.+.+ ..+||+||+++++++|++|.++|+++|++|+|+++|+++|++++|||+++
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~~~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~ 87 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIYGK------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMA 87 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEECC------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 478999999999999999999866 68999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHh---hccc----CccEEEEecCcchHHHHHHhhCCceEEe
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIID---RAPR----CLKKIISIREVRMATMQRARSRAIEIIR 235 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~---~~~~----~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (391)
|++++|+++.++.+++.++|+.++++++|++.+. ...+.. ..+. ....++.++...... ........
T Consensus 88 G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 161 (579)
T PLN03102 88 GAVLNPINTRLDATSIAAILRHAKPKILFVDRSF-EPLAREVLHLLSSEDSNLNLPVIFIHEIDFPK-----RPSSEELD 161 (579)
T ss_pred CcEEeeccccCCHHHHHHHHhccCCeEEEEChhh-HHHHHHHHhhccccccccCceEEEeccccccc-----CCcccccC
Confidence 9999999999999999999999999999998752 222221 1110 012344444321100 00111234
Q ss_pred HHHHHHhhhccCCC----CCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHH
Q psy2417 236 FDEIERVGAQKMFE----EVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311 (391)
Q Consensus 236 ~~~l~~~~~~~~~~----~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 311 (391)
++++...+...... .....++++++|+|||||||.||||+++|+++..........+. +...++++..+|++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~---~~~~~~~l~~~pl~h 238 (579)
T PLN03102 162 YECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWE---MGTCPVYLWTLPMFH 238 (579)
T ss_pred HHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcC---CCCCCeEEecCChhh
Confidence 55554332211100 01235789999999999999999999999997655444333344 667789999999999
Q ss_pred HHHHHHHHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHH
Q psy2417 312 MLERTCESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 312 ~~g~~~~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~ 383 (391)
.+++...+.+++.|+++++.+. ++..+++.|++++||++.++|+++..|.+... .....++++.+++||+..
T Consensus 239 ~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~ 312 (579)
T PLN03102 239 CNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPP 312 (579)
T ss_pred hcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCC
Confidence 9998877888999999988765 88899999999999999999999999987532 222334667777777643
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=294.63 Aligned_cols=281 Identities=17% Similarity=0.150 Sum_probs=223.4
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
...++.++|++.++.+||++|+.+.+ +.+||+||.++++++|.+|.+.|+++|++|+++++|+++|+++++||+
T Consensus 19 ~~~~l~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~ 92 (542)
T PRK06155 19 SERTLPAMLARQAERYPDRPLLVFGG------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCA 92 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEeCC------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHH
Confidence 35689999999999999999999866 689999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEeHHH
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIRFDE 238 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
++|++++|+++.++.+++.++++++++++++++... ...+...... .++.++.++..... ... ..+..
T Consensus 93 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~ 162 (542)
T PRK06155 93 WLGAIAVPINTALRGPQLEHILRNSGARLLVVEAAL-LAALEAADPGDLPLPAVWLLDAPASV----SVP-----AGWST 162 (542)
T ss_pred HhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhh-HHHHHHhcccccCcceEEEecCcccc----ccc-----cccch
Confidence 999999999999999999999999999999998753 2222221111 34556666543210 000 00110
Q ss_pred HHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH
Q psy2417 239 IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE 318 (391)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 318 (391)
................++++++|+|||||||.||||+++|+++..........++ +.+++++++.+|++|.+++...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~---~~~~~~~l~~~pl~~~~~~~~~ 239 (542)
T PRK06155 163 APLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLE---IGADDVLYTTLPLFHTNALNAF 239 (542)
T ss_pred hhhcccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcC---CCCCCEEEEecCHHHHHHHHHH
Confidence 0000011111122346789999999999999999999999999988777777777 8899999999999999999888
Q ss_pred HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHH
Q psy2417 319 SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNM 380 (391)
Q Consensus 319 ~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gg 380 (391)
+.+++.|+++++.+. ++..+++.|+++++|++.++|+++..|.+... .....+++|.++.||
T Consensus 240 ~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~ 303 (542)
T PRK06155 240 FQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPG 303 (542)
T ss_pred HHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcC
Confidence 999999999999776 89999999999999999999999998876532 233345666555444
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=295.07 Aligned_cols=294 Identities=22% Similarity=0.289 Sum_probs=228.4
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.+++++.++++|+++|+.+.+ +.+||+||.++++++|++|.+.|+++|++|+++++|+++|+++++||++
T Consensus 31 ~~~l~~~~~~~~~~~p~~~a~~~~~------~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~ 104 (573)
T PRK05605 31 DTTLVDLYDNAVARFGDRPALDFFG------ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLR 104 (573)
T ss_pred cCCHHHHHHHHHHHCCCCeEEEeCC------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 3489999999999999999999866 6899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc-CccEEEEecCcchHH--------------H---
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR-CLKKIISIREVRMAT--------------M--- 223 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~~~--------------~--- 223 (391)
+|++++|++|.++.+++.+++++++++++|++... ...+...... .++.++.++...... .
T Consensus 105 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (573)
T PRK05605 105 LGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKV-APTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKAR 183 (573)
T ss_pred cCcEEeecCcCCCHHHHHHHHhccCCcEEEechhh-HHHHHhhhhccccceeEeeecccccccccccccccccccccccc
Confidence 99999999999999999999999999999997752 2222211111 344454443211000 0
Q ss_pred HHHhhCCceEEeHHHHHHhhhccC---CCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCC
Q psy2417 224 QRARSRAIEIIRFDEIERVGAQKM---FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYS 300 (391)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~ 300 (391)
+...........|+++........ .......++++++|+|||||||.||||+++|+++...+......+... ...+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~-~~~~ 262 (573)
T PRK05605 184 AALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGL-GDGP 262 (573)
T ss_pred cccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhcccc-CCCC
Confidence 000001223456766654322110 112234678999999999999999999999999988776544433210 2347
Q ss_pred CEEEEcCChHHHHHHHHH-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHH
Q psy2417 301 DVLISFLPLAHMLERTCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLM 377 (391)
Q Consensus 301 d~~l~~~pl~h~~g~~~~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~ 377 (391)
+++++.+|++|.+|+... +.+++.|+++++.+. ++..+++.+++++||++.++|.+++.|.+.. ....++++||.++
T Consensus 263 ~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~ 342 (573)
T PRK05605 263 ERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAF 342 (573)
T ss_pred cEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEE
Confidence 899999999999998766 678999999998765 9999999999999999999999999998763 3455678999999
Q ss_pred HHHHHH
Q psy2417 378 FNMAMG 383 (391)
Q Consensus 378 ~gga~~ 383 (391)
+||+..
T Consensus 343 ~gg~~l 348 (573)
T PRK05605 343 SGAMAL 348 (573)
T ss_pred ECCCcC
Confidence 998765
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=293.47 Aligned_cols=288 Identities=17% Similarity=0.146 Sum_probs=226.8
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHH
Q psy2417 78 LYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQ 157 (391)
Q Consensus 78 ~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~l 157 (391)
+.+...++.++|++.++.+|+++|+...+ +.+||+||.++++++|++|.+.|+++|++|+++++|+++|+++++
T Consensus 5 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~------~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~l 78 (540)
T PRK06164 5 AAPRADTLASLLDAHARARPDAVALIDED------RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFL 78 (540)
T ss_pred cccCCCCHHHHHHHHHHhCCCCeEEecCC------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHH
Confidence 34556689999999999999999998654 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc---hhHHHhhcc----cCccEEEEecCcchHHHHHHhhCC
Q psy2417 158 GAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK---CNQIIDRAP----RCLKKIISIREVRMATMQRARSRA 230 (391)
Q Consensus 158 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---~~~~~~~~~----~~l~~ii~~~~~~~~~~~~~~~~~ 230 (391)
||+++|++++|+++..+.+++.++++++++++++++.+.. +...+.... ..++.++.++...... ..
T Consensus 79 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 152 (540)
T PRK06164 79 ACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADAT------PA 152 (540)
T ss_pred HHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccC------CC
Confidence 9999999999999999999999999999999999987631 111111111 1345555554211000 00
Q ss_pred ceEEeHHHHHHhhhccCC---CCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcC
Q psy2417 231 IEIIRFDEIERVGAQKMF---EEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFL 307 (391)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~---~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~ 307 (391)
.....+.++......... ......++++++++|||||||.||||+++|+++.+.+......++ +..++++++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---~~~~~~~l~~~ 229 (540)
T PRK06164 153 PAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYG---YDPGAVLLAAL 229 (540)
T ss_pred CCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcC---CCCCCEEEEcC
Confidence 000001111100000000 011234688999999999999999999999999999888888887 88999999999
Q ss_pred ChHHHHHHHHHHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHH
Q psy2417 308 PLAHMLERTCESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNM 380 (391)
Q Consensus 308 pl~h~~g~~~~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gg 380 (391)
|++|.+|+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+......+++++|.+.+++
T Consensus 230 p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~l~~~~~~~ 303 (540)
T PRK06164 230 PFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGERADFPSARLFGFAS 303 (540)
T ss_pred CchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhcccCCCcceeeeeecc
Confidence 99999999877999999999998775 89999999999999999999999999988744456677888765554
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=289.84 Aligned_cols=286 Identities=20% Similarity=0.258 Sum_probs=221.1
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.++|++.++++|+++|+.+.+. +++++.+||+||.++++++|++|.++|+++|++|+++++|+++++++++||++
T Consensus 6 ~~~l~~~~~~~a~~~p~~~a~~~~~~-~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~ 84 (517)
T PRK08008 6 GQHLRQMWDDLADVYGHKTALIFESS-GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAK 84 (517)
T ss_pred cccHHHHHHHHHHHCCCceEEEcccC-CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 45899999999999999999988652 34468899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHh---hcccCccEEEEecCcchHHHHHHhhCCceEEeHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIID---RAPRCLKKIISIREVRMATMQRARSRAIEIIRFDE 238 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~---~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
+|++++|+++.++.+++.++++++++++++++... ...+.+ .....++.++..+..... ...+..+++
T Consensus 85 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 155 (517)
T PRK08008 85 IGAIMVPINARLLREESAWILQNSQASLLVTSAQF-YPMYRQIQQEDATPLRHICLTRVALPA--------DDGVSSFTQ 155 (517)
T ss_pred cCeEEEEcCcccCHHHHHHHHHhcCceEEEEecch-hHHHHHHHhhccccCcEEEEecCCCcc--------cccccCHHH
Confidence 99999999999999999999999999999998853 222222 112144556655542110 112334444
Q ss_pred HHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH
Q psy2417 239 IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE 318 (391)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 318 (391)
+............+..++++++|+|||||||.||||+++|+|+............ +..++++++.+|++|..+....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~ 232 (517)
T PRK08008 156 LKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCA---LRDDDVYLTVMPAFHIDCQCTA 232 (517)
T ss_pred HhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcC---CCCCCeEEEecCcHHHHHHHHH
Confidence 4332221111223346789999999999999999999999999865433222223 7789999999999998776665
Q ss_pred -HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHH
Q psy2417 319 -SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNM 380 (391)
Q Consensus 319 -~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gg 380 (391)
+.++..|+++++.+. ++..+++.++++++|++.++|.+++.+..... ......++|.+++++
T Consensus 233 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~ 297 (517)
T PRK08008 233 AMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYL 297 (517)
T ss_pred HHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEec
Confidence 789999999999876 89999999999999999999999998876421 112234566555543
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=298.67 Aligned_cols=282 Identities=18% Similarity=0.162 Sum_probs=217.1
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.+.|.++++.+|+++|+.+.+. .+.+||+||+++++++|++|.+.|+++|++|+|+++|++++++++|||++
T Consensus 13 ~~~~~~~l~~~a~~~p~~~a~~~~~~----~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~ 88 (540)
T PRK05857 13 PSTVLDRVFEQARQQPEAIALRRCDG----TSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAK 88 (540)
T ss_pred CcchHHHHHHHHhhCCCcEEEeecCC----CceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 45899999999999999999986442 25799999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcch--hHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKC--NQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEI 239 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~--~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (391)
+|++++|+++.++.+++.++++.+++++++++..... ..+.+... .+. ++.++..... . . ..+.+
T Consensus 89 ~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~--------~--~-~~~~~ 155 (540)
T PRK05857 89 LGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALH-SIP-VIAVDIAAVT--------R--E-SEHSL 155 (540)
T ss_pred cCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcccccccccc-ccc-eeEeeccccc--------c--c-ccccc
Confidence 9999999999999999999999999999999875311 11111111 222 2223221100 0 0 00000
Q ss_pred HHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHh-hcCCCCCCCCEEEEcCChHHHHHHHHH
Q psy2417 240 ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQ-LSDHRPKYSDVLISFLPLAHMLERTCE 318 (391)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~~~~d~~l~~~pl~h~~g~~~~ 318 (391)
. ...........++++++|+|||||||.||||+++|+++.++....... ........+++.++.+|++|.+++...
T Consensus 156 -~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~ 232 (540)
T PRK05857 156 -D--AASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWI 232 (540)
T ss_pred -c--ccccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHHH
Confidence 0 000001123467899999999999999999999999998765443221 000015678899999999999999877
Q ss_pred HHHHHhCcEEEEeCCCHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHH
Q psy2417 319 SAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 319 ~~~L~~G~~vv~~~~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~ 383 (391)
+.+++.|+++++.+.++..+++.+++++||+++++|.++..+.+... ...+++++|.+++||+..
T Consensus 233 ~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~ 298 (540)
T PRK05857 233 LTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRA 298 (540)
T ss_pred HHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccC
Confidence 89999999988766689999999999999999999999999987632 345677999999998764
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=289.62 Aligned_cols=268 Identities=22% Similarity=0.232 Sum_probs=220.7
Q ss_pred CHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 84 TLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLG-LGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 84 tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
.+.+.|++.++.+||++|+.+.+ +.+||+||+++++++|++|++ .|+.+|++|+++++|+++++++++||+++
T Consensus 3 ~~~~~~~~~a~~~p~~~a~~~~~------~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~ 76 (496)
T PRK06839 3 GIAYWIEKRAYLHPDRIAIITEE------EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKV 76 (496)
T ss_pred cHHHHHHHHHHHCCCCeEEEECC------ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 57899999999999999999865 799999999999999999985 79999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEeHHHHH
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (391)
|++++|+++.++.+++.++++++++++++++... .. ....... ....++.+++ ++++.
T Consensus 77 G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~-~~-~~~~~~~~~~~~~~~~~~~------------------~~~~~ 136 (496)
T PRK06839 77 ECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTF-QN-MALSMQKVSYVQRVISITS------------------LKEIE 136 (496)
T ss_pred CcEEEecCcccCHHHHHHHHHhcCceEEEEcHHH-HH-HHHHhhhccCcceEEEecc------------------hHhhh
Confidence 9999999999999999999999999999998752 22 2222111 1223333321 22222
Q ss_pred HhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-H
Q psy2417 241 RVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE-S 319 (391)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~-~ 319 (391)
.. ......+..++++++|+|||||||.||||+++|+++..........++ +..+|+++..+|++|.+|+... +
T Consensus 137 ~~---~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~g~~~~~~ 210 (496)
T PRK06839 137 DR---KIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAID---LTMHDRSIVLLPLFHIGGIGLFAF 210 (496)
T ss_pred cc---CCCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcC---CCCCCeEEEeeCCcchhhHHHHHH
Confidence 11 111223446789999999999999999999999999877666666666 8899999999999999998776 7
Q ss_pred HHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q psy2417 320 AMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 320 ~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~ 383 (391)
.++..|+++++.+. ++..+++.++++++|++.++|.+++.+.+.. ....+++++|.+++||+..
T Consensus 211 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~ 276 (496)
T PRK06839 211 PTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPC 276 (496)
T ss_pred HHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCC
Confidence 89999999988765 9999999999999999999999999998763 2345677999999999765
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=291.28 Aligned_cols=291 Identities=19% Similarity=0.258 Sum_probs=229.1
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.++|++.++.+|++.++.+.. +++++.+||.||+++++++|++|.+.|+++|++|+++++|+++++++++||++
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~ 86 (539)
T PRK07008 9 PLLISSLIAHAARHAGDTEIVSRRV--EGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSG 86 (539)
T ss_pred CCCHHHHHHHHHhhCCCceEEEeec--cCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHh
Confidence 3579999999999999998887643 22357899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHh---hcccCccEEEEecCcchHHHHHHhhCCceEEeHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIID---RAPRCLKKIISIREVRMATMQRARSRAIEIIRFDE 238 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~---~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
+|++++|++|.++.+++.++++.+++++++++... ...+.+ ... .++.++.++..... ....+.+..+++
T Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 159 (539)
T PRK07008 87 SGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTF-LPLVDALAPQCP-NVKGWVAMTDAAHL-----PAGSTPLLCYET 159 (539)
T ss_pred cCcEEeecccccCHHHHHHHHhccCCcEEEEcchh-HHHHHHHHhhCC-CceEEEEEccCCcc-----ccCCcccccHHH
Confidence 99999999999999999999999999999998752 222221 222 44455554432110 011234566777
Q ss_pred HHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHH--HHHhhcCCCCCCCCEEEEcCChHHHHHHH
Q psy2417 239 IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA--ALLQLSDHRPKYSDVLISFLPLAHMLERT 316 (391)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~--~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 316 (391)
+........ ......++++++|+|||||||.||||++||++++..... ....++ +..+|+++..+|++|.+++.
T Consensus 160 l~~~~~~~~-~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~---~~~~d~~l~~~p~~h~~~~~ 235 (539)
T PRK07008 160 LVGAQDGDY-DWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMG---LSARDAVLPVVPMFHVNAWG 235 (539)
T ss_pred HhcccCCCc-CcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccC---CCCCceEEecCchHHhhhHH
Confidence 654322211 122346788999999999999999999999998754322 223444 78899999999999998887
Q ss_pred HHHHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHH
Q psy2417 317 CESAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 317 ~~~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~~k 385 (391)
..+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+... ...+++++|.+++||+...+
T Consensus 236 ~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~ 307 (539)
T PRK07008 236 LPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPP 307 (539)
T ss_pred HHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCH
Confidence 77888999999998754 88999999999999999999999999987633 34567799999998876544
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=291.31 Aligned_cols=284 Identities=18% Similarity=0.167 Sum_probs=226.9
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
...++.++|+++++.+|+++|+.+.+ +.+||+||.++++++|.+|.+.|+++|++|+++++|+++|+++++||+
T Consensus 21 ~~~~l~~~~~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~ 94 (527)
T TIGR02275 21 QDKPLTDILRDQAARYPDAIAIICGN------RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALL 94 (527)
T ss_pred cCCcHHHHHHHHHHHCCCceEEEeCC------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHH
Confidence 35689999999999999999998765 799999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcch---hHHHhhccc---CccEEEEecCcchHHHHHHhhCCceEE
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKC---NQIIDRAPR---CLKKIISIREVRMATMQRARSRAIEII 234 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~---~~~~~~~~~---~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (391)
++|++++++++..+.+++.++++.+++++++++..... ......... .++.++........ .
T Consensus 95 ~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 162 (527)
T TIGR02275 95 KLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVE------------A 162 (527)
T ss_pred HcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCc------------c
Confidence 99999999999999999999999999999999875211 111111111 33444443321000 0
Q ss_pred eHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHH
Q psy2417 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLE 314 (391)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 314 (391)
.+......... ........++++++|+|||||||.||||+++|+++...+......+. +..+|++++.+|++|.++
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~---~~~~d~~l~~~P~~h~~~ 238 (527)
T TIGR02275 163 ELFLWLESPAE-PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICW---LTQQTRYLCALPAAHNYP 238 (527)
T ss_pred hhhHHhhCcCc-cccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcC---CCcCCEEEECCChHhhhh
Confidence 01111111100 11122346789999999999999999999999999998888777776 889999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHH
Q psy2417 315 RTC--ESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGSKE 386 (391)
Q Consensus 315 ~~~--~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~k~ 386 (391)
+.. .+.++..|+++++.+. ++..+++.++++++|++..+|.++..+.+.. ....+++++|.+++||+...+.
T Consensus 239 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~ 314 (527)
T TIGR02275 239 LSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEA 314 (527)
T ss_pred hhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHH
Confidence 875 4788999999998765 8999999999999999999999999887763 3345667899999999876443
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=304.91 Aligned_cols=281 Identities=17% Similarity=0.187 Sum_probs=218.1
Q ss_pred CCCCHHHHHHHHHHhcCC-CceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNN-GRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd-~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
...|+.++|++.++++|+ ++|+.+.+ ++.+||+||.++++++|++|.+. +++||+|+|+++|++||++++|||
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~~~-----~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~ 275 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIEDVN-----FTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGA 275 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEcCC-----CCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHH
Confidence 456899999999999998 57776432 26799999999999999999987 599999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhH-----HHhhcccCccEEEEecCcchHHHHHHhhCCceEE
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQ-----IIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~-----~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (391)
+++|++++|+++.++.+++.+++++++++++|++.+. ... +..... .++ ++.++..... .
T Consensus 276 ~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~-~~~~~~~~~~~~~~-~~~-~i~~~~~~~~------------~ 340 (718)
T PRK08043 276 SLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQF-LDKGKLWHLPEQLT-QVR-WVYLEDLKDD------------V 340 (718)
T ss_pred HHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHH-HhhccCCChhhhhc-ccc-EEEhhhhhhh------------c
Confidence 9999999999999999999999999999999997642 111 000011 112 2222211000 0
Q ss_pred eHHHH-H-Hhhh-ccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHH
Q psy2417 235 RFDEI-E-RVGA-QKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311 (391)
Q Consensus 235 ~~~~l-~-~~~~-~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 311 (391)
.+.+. . .... .......+..++|+++|+|||||||.||||+++|+++.+.+......++ +.++|++++.+|++|
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~---~~~~d~~l~~~Pl~h 417 (718)
T PRK08043 341 TTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIAD---FTPNDRFMSALPLFH 417 (718)
T ss_pred chhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhC---CCccCeEEEcCcchh
Confidence 11110 0 0000 0011112346799999999999999999999999999998887777776 889999999999999
Q ss_pred HHHHHHH-HHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q psy2417 312 MLERTCE-SAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSKE 386 (391)
Q Consensus 312 ~~g~~~~-~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~k~ 386 (391)
.+++... +.+|..|+++++.+. ++..+.+.+.++++|+++.+|+++..+.+. ....++++||.+++||+.....
T Consensus 418 ~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~-~~~~~~~~lr~i~~gg~~l~~~ 494 (718)
T PRK08043 418 SFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARF-ANPYDFARLRYVVAGAEKLQES 494 (718)
T ss_pred hhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhh-cCcccccceEEEEEeCccCCHH
Confidence 9998765 789999999998764 667888999999999999999999887653 2334677899999999876443
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=290.98 Aligned_cols=295 Identities=18% Similarity=0.239 Sum_probs=222.6
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLG-LGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
.|+.++|++.++.+|+++|+...+ +.+||+||+++++++|++|.+ .|+++|++|+++++|+++|++++|||++
T Consensus 24 ~~~~~~l~~~a~~~p~~~al~~~~------~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~ 97 (562)
T PRK05677 24 PNIQAVLKQSCQRFADKPAFSNLG------KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMR 97 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEEECC------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 589999999999999999998765 689999999999999999997 6999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc-CccEEEEecCcc--hHHHH-HH-----------
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR-CLKKIISIREVR--MATMQ-RA----------- 226 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~l~~ii~~~~~~--~~~~~-~~----------- 226 (391)
+|++++|++|.++.+++.+++++++++++|++... ...+.+.... .++.++..+... ..... ..
T Consensus 98 ~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (562)
T PRK05677 98 AGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANM-AHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMV 176 (562)
T ss_pred cCeEEeecCCCCCHHHHHHHHhccCceEEEEecch-hhhHHHhhhccCcceeEEecccccccchhhhhcccchhhccccc
Confidence 99999999999999999999999999999997652 2211111111 344444432110 00000 00
Q ss_pred hh-CCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCC-CCCEEE
Q psy2417 227 RS-RAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPK-YSDVLI 304 (391)
Q Consensus 227 ~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~-~~d~~l 304 (391)
.. .......+.+................++++++|+|||||||.||||+++|+++...+......+... +. ..++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~ 255 (562)
T PRK05677 177 PAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSN-LNEGCEILI 255 (562)
T ss_pred cccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccC-CCCCccEEE
Confidence 00 0001233444443322221122345679999999999999999999999999988776655544311 23 347889
Q ss_pred EcCChHHHHHHHHH-HHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHH
Q psy2417 305 SFLPLAHMLERTCE-SAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNM 380 (391)
Q Consensus 305 ~~~pl~h~~g~~~~-~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gg 380 (391)
+.+|++|.+++... +..+..|+++++.+. ++..+++.++++++|.++.+|.++..+.+.. ....+++++|.+++||
T Consensus 256 ~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG 335 (562)
T PRK05677 256 APLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGG 335 (562)
T ss_pred EcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcC
Confidence 99999999998765 678888888777653 8899999999999999999999999887652 2334567899999999
Q ss_pred HHHHH
Q psy2417 381 AMGSK 385 (391)
Q Consensus 381 a~~~k 385 (391)
+....
T Consensus 336 ~~~~~ 340 (562)
T PRK05677 336 MALQL 340 (562)
T ss_pred ccCCH
Confidence 87543
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=291.66 Aligned_cols=284 Identities=19% Similarity=0.233 Sum_probs=227.8
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..|+.++|+++++.+||++|+.+.+. +.+||+||+++++++|++|++.|+++|++|+++++|+++++++++||++
T Consensus 22 ~~~l~~~~~~~~~~~pd~~a~~~~~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~ 96 (547)
T PRK06087 22 DASLADYWQQTARAMPDKIAVVDNHG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLK 96 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEcCCC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 35799999999999999999987542 6899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc----hhHHH---hhcccCccEEEEecCcchHHHHHHhhCCceEE
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK----CNQII---DRAPRCLKKIISIREVRMATMQRARSRAIEII 234 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~----~~~~~---~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (391)
+|++++|+++.++.+++.++++++++++++++.... ...+. .... .++.++.++..... ....
T Consensus 97 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~ 166 (547)
T PRK06087 97 VGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLP-QLQQIVGVDKLAPA---------TSSL 166 (547)
T ss_pred cCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCC-CCcEEEEeCCcCCC---------cCcc
Confidence 999999999999999999999999999999976321 11111 1121 44456666543211 1112
Q ss_pred eHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHH
Q psy2417 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLE 314 (391)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 314 (391)
.+.++....... ..+.....+++++|+|||||||.||||+++|.++..........++ +.++|++++.+|++|++|
T Consensus 167 ~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~---~~~~d~~l~~~pl~h~~g 242 (547)
T PRK06087 167 SLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLN---LTWQDVFMMPAPLGHATG 242 (547)
T ss_pred CHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcC---CCCCCeEEEecchHHHHH
Confidence 444443322111 1223346789999999999999999999999999988777776666 889999999999999999
Q ss_pred HHHH-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Q psy2417 315 RTCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 315 ~~~~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~ 384 (391)
+... +.+++.|+++++.+. ++..+++.+.++++|+++.+|..+..+++.. ....+++++|.+++||+...
T Consensus 243 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~ 315 (547)
T PRK06087 243 FLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIP 315 (547)
T ss_pred HHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCC
Confidence 8766 788999999999876 8999999999999999998877776666653 34456678999999987643
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=301.98 Aligned_cols=264 Identities=16% Similarity=0.118 Sum_probs=213.2
Q ss_pred CCHHHHHHHHHHh--cCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 83 KTLYDAFRKGAKE--SNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 83 ~tl~~~l~~~~~~--~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
.++.++|.+.++. +||++|+.+ + ..+||+||+++++++|++|.++|+++|++|+|+++|+++|+++++||+
T Consensus 4 ~~~~~~~~~~a~~~~~pd~~a~~~-~------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~ 76 (705)
T PRK06060 4 GNLAGLLAEQASEAGWYDRPAFYA-A------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACL 76 (705)
T ss_pred cCHHHHHHHHHhhccCCCceEEEe-c------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 4789999998886 799999975 2 369999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHH
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (391)
++|++++|++|.++.+++.+++++++++++|++... ...+ . .. .+ ....++.
T Consensus 77 ~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~----~-~~-~~---------------------~~~~~~~ 128 (705)
T PRK06060 77 ARGVMAFLANPELHRDDHALAARNTEPALVVTSDAL-RDRF----Q-PS-RV---------------------AEAAELM 128 (705)
T ss_pred HhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHH-hhhh----c-cc-cc---------------------chhhhhh
Confidence 999999999999999999999999999999998642 1111 0 00 00 0011111
Q ss_pred Hhhhc-cCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHH-HhhcCCCCCCCCEEEEcCChHHHHHHHHH
Q psy2417 241 RVGAQ-KMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAAL-LQLSDHRPKYSDVLISFLPLAHMLERTCE 318 (391)
Q Consensus 241 ~~~~~-~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~-~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 318 (391)
..... ......+..+++++||+|||||||.||||+++|+++.+++.... ..+. +.++|++++..|++|.+++...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~---~~~~d~~l~~~~~~~~~~~~~~ 205 (705)
T PRK06060 129 SEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALR---LTPEDTGLCSARMYFAYGLGNS 205 (705)
T ss_pred hhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhC---CCCcceeEEeccchhhcchhHH
Confidence 11000 01111234578999999999999999999999999998876654 3455 8889999999999999998654
Q ss_pred -HHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q psy2417 319 -SAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 319 -~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~k 385 (391)
+.+|..|+++++.+. ++..+.+.+.++++|+++++|+++.++.+... ..++++||.+++||+...+
T Consensus 206 ~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~slr~i~~gGe~l~~ 274 (705)
T PRK06060 206 VWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS-PDSFRSLRCVVSAGEALEL 274 (705)
T ss_pred HHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc-cccccceeEEEEecCcCCH
Confidence 789999999999764 78888999999999999999999999886532 2356789999999987644
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=288.98 Aligned_cols=286 Identities=19% Similarity=0.225 Sum_probs=230.3
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.++|+++++++|+++|+.+.+ +.+||+||.++++++|..|.+.|+++|++|+++++|+++++++++||++
T Consensus 10 ~~~l~~~l~~~a~~~~~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~ 83 (523)
T PRK08316 10 RQTIGDILRRSARRYPDKTALVFGD------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACAR 83 (523)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEECC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876 7899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc-CccEEEEecCcchHHHHHHhhCCceEEeHHHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR-CLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (391)
+|++++|+++.++.+++.++++.+++++++++... ...+.+.... ....+....... .......+..++++.
T Consensus 84 ~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 156 (523)
T PRK08316 84 AGAVHVPVNFMLTGEELAYILDHSGARAFLVDPAL-APTAEAALALLPVDTLILSLVLG------GREAPGGWLDFADWA 156 (523)
T ss_pred cCcEEEecccccCHHHHHHHHHhCCCCEEEEccch-HHHHHHHhhhcCccceeeeeccc------ccccccchhhHHHHH
Confidence 99999999999999999999999999999998763 3333222111 111111111000 001112234455444
Q ss_pred HhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-H
Q psy2417 241 RVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE-S 319 (391)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~-~ 319 (391)
...... ........+++++|+|||||||.||+|.++|++++.........++ +..+|+++..+|++|.+++... +
T Consensus 157 ~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~---~~~~~~~~~~~p~~h~~g~~~~~~ 232 (523)
T PRK08316 157 EAGSVA-EPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGD---MSADDIPLHALPLYHCAQLDVFLG 232 (523)
T ss_pred hcCCCc-cCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhC---CCCCceEEEccCCchhhhHHHHHH
Confidence 322211 1233456789999999999999999999999999998888777777 8999999999999999998766 5
Q ss_pred HHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Q psy2417 320 AMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 320 ~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~ 384 (391)
.++..|+++++.+. ++..+++.++++++|++.++|.++..+.+.. ....+++++|.+++||+...
T Consensus 233 ~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~ 299 (523)
T PRK08316 233 PYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMP 299 (523)
T ss_pred HHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCC
Confidence 67899999999865 9999999999999999999999999998763 34456779999999987653
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=290.40 Aligned_cols=286 Identities=22% Similarity=0.294 Sum_probs=226.8
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.++|++.++++|+++|+++.+. .+.+||+||.++++++|.+|.+.|+++|++|+|+++|+++|+++++||++
T Consensus 17 ~~~l~~~l~~~~~~~p~~~a~~~~~~----~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~ 92 (558)
T PRK12583 17 TQTIGDAFDATVARFPDREALVVRHQ----ALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATAR 92 (558)
T ss_pred cCcHHHHHHHHHHHCCCCeEEEecCC----CcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 35899999999999999999988542 26899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcch----hHHH---hhcc------------cCccEEEEecCcchHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKC----NQII---DRAP------------RCLKKIISIREVRMAT 222 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~----~~~~---~~~~------------~~l~~ii~~~~~~~~~ 222 (391)
+|++++|+++.++.+++.++++++++++++++..... ..+. .... ..++.++.++...
T Consensus 93 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 169 (558)
T PRK12583 93 IGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP--- 169 (558)
T ss_pred hCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCC---
Confidence 9999999999999999999999999999999764211 1111 1100 0223333333211
Q ss_pred HHHHhhCCceEEeHHHHHHhhhccC-----CCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCC
Q psy2417 223 MQRARSRAIEIIRFDEIERVGAQKM-----FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRP 297 (391)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 297 (391)
......|+++...+.... .......++++++++|||||||.||||.++|+++.+.+......++ +
T Consensus 170 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~---~ 239 (558)
T PRK12583 170 -------PPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLG---L 239 (558)
T ss_pred -------CccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhC---C
Confidence 112234444433221110 0112345788999999999999999999999999988888777777 8
Q ss_pred CCCCEEEEcCChHHHHHHHHH-HHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhH
Q psy2417 298 KYSDVLISFLPLAHMLERTCE-SAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFI 373 (391)
Q Consensus 298 ~~~d~~l~~~pl~h~~g~~~~-~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~sl 373 (391)
..+|++++.+|++|.+|.... +.++..|+++++... ++..+++.++++++|+++++|+++..+.... ....+++++
T Consensus 240 ~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~l 319 (558)
T PRK12583 240 TEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSL 319 (558)
T ss_pred CCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhh
Confidence 899999999999999998877 788999999987643 8899999999999999999999998887653 234567899
Q ss_pred HHHHHHHHHHH
Q psy2417 374 KRLMFNMAMGS 384 (391)
Q Consensus 374 r~~~~gga~~~ 384 (391)
|.+++||+...
T Consensus 320 r~i~~~G~~~~ 330 (558)
T PRK12583 320 RTGIMAGAPCP 330 (558)
T ss_pred eEEEecCCCCC
Confidence 99999987553
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=289.03 Aligned_cols=287 Identities=23% Similarity=0.302 Sum_probs=229.6
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
...++.++|++.++++|+++|+.+.+. .+.+||+||.++++++|.+|.+.|+++|++|+++++|++++++++|||+
T Consensus 14 ~~~~l~~~l~~~~~~~~~~~ai~~~~~----~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~ 89 (559)
T PRK08315 14 LEQTIGQLLDRTAARYPDREALVYRDQ----GLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATA 89 (559)
T ss_pred hhccHHHHHHHHHHHCCCCeEEEEcCC----CeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHH
Confidence 345899999999999999999988542 2689999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcch----hHHHhhcc---------------cCccEEEEecCcchH
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKC----NQIIDRAP---------------RCLKKIISIREVRMA 221 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~----~~~~~~~~---------------~~l~~ii~~~~~~~~ 221 (391)
++|++++|++|..+.+++.++++++++++++++..... ..+.+... ...+.++.++...
T Consensus 90 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 167 (559)
T PRK08315 90 KIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEK-- 167 (559)
T ss_pred HhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccC--
Confidence 99999999999999999999999999999999875311 11111000 0233444443311
Q ss_pred HHHHHhhCCceEEeHHHHHHhhhccC-----CCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCC
Q psy2417 222 TMQRARSRAIEIIRFDEIERVGAQKM-----FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHR 296 (391)
Q Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 296 (391)
......++++........ .......++++++|+|||||||.||||.++|+++...+......++
T Consensus 168 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~--- 236 (559)
T PRK08315 168 --------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMK--- 236 (559)
T ss_pred --------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcC---
Confidence 112345555543321110 0112345788999999999999999999999999998888877777
Q ss_pred CCCCCEEEEcCChHHHHHHHHH-HHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchh
Q psy2417 297 PKYSDVLISFLPLAHMLERTCE-SAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSF 372 (391)
Q Consensus 297 ~~~~d~~l~~~pl~h~~g~~~~-~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~s 372 (391)
+.++|+++..+|++|.+++... +.++..|+++++... ++..+++.+.++++|+++++|.++..+.... ....++++
T Consensus 237 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~ 316 (559)
T PRK08315 237 LTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSS 316 (559)
T ss_pred CCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchh
Confidence 8999999999999999998776 789999999986543 8999999999999999999999998887653 33456789
Q ss_pred HHHHHHHHHHHH
Q psy2417 373 IKRLMFNMAMGS 384 (391)
Q Consensus 373 lr~~~~gga~~~ 384 (391)
||.+++||+...
T Consensus 317 lr~~~~~G~~~~ 328 (559)
T PRK08315 317 LRTGIMAGSPCP 328 (559)
T ss_pred hheeEecCCCCC
Confidence 999999987654
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=294.87 Aligned_cols=277 Identities=18% Similarity=0.176 Sum_probs=217.3
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeec---CCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQN---ISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQ 157 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~---~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~l 157 (391)
...++.++|+++++.+|+++|+.+.+. .++.++.+||+||+++++++|++|.+. +++|++|+|+++|+++|++++|
T Consensus 19 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~l 97 (631)
T PRK07769 19 PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFF 97 (631)
T ss_pred ccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHH
Confidence 446899999999999999999987542 122357899999999999999999987 8999999999999999999999
Q ss_pred HHHhcCCeEEEc-cCCCC--HHHHHHHHHhcCccEEEEcCCcchhHHHh---hccc-CccEEEEecCcchHHHHHHhhCC
Q psy2417 158 GAYCYSMIIVAL-YDTLG--PDACAFIINQAEISVLIVDDDSKCNQIID---RAPR-CLKKIISIREVRMATMQRARSRA 230 (391)
Q Consensus 158 A~~~~G~~~vpl-~~~~~--~~~l~~il~~~~~~~vi~~~~~~~~~~~~---~~~~-~l~~ii~~~~~~~~~~~~~~~~~ 230 (391)
||+++|+++||+ ++..+ .+++.+++++++++++|++... ...+.+ ..+. ....++.++....
T Consensus 98 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 166 (631)
T PRK07769 98 GALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDS-AEGVRKFFRARPAKERPRVIAVDAVPD---------- 166 (631)
T ss_pred HHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHH-HHHHHHHHhhccccccceEEEcccccc----------
Confidence 999999999999 55554 6899999999999999998752 222211 1110 1123333322100
Q ss_pred ceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChH
Q psy2417 231 IEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLA 310 (391)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 310 (391)
.. ..........++++++|+|||||||.||||+++|+++.+.+......++ +..+|++++++|++
T Consensus 167 -----------~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---~~~~d~~l~~~Pl~ 231 (631)
T PRK07769 167 -----------EV-GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALE---GQEGDRGVSWLPFF 231 (631)
T ss_pred -----------cc-ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcC---CCCcceEEEeCCCc
Confidence 00 0000112346799999999999999999999999999988887777776 88999999999999
Q ss_pred HHHHHHHHHHHHHhCcEEEEeCC-----CHHhHHHHHHhcCC---cEEecChHHHHHHHHH---HH---HhcCchhHHHH
Q psy2417 311 HMLERTCESAMFLVGGSIGYYSG-----DIKNLTEDMKTLKP---TIMPAVPRLLNRMYDK---VM---AQIRPSFIKRL 376 (391)
Q Consensus 311 h~~g~~~~~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~---t~~~~~P~~l~~l~~~---~~---~~~~~~slr~~ 376 (391)
|++|+...+.+++.|+++++.+. ++..+++.+.++++ |++..+|.++..+... .. ...++++||.+
T Consensus 232 h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~ 311 (631)
T PRK07769 232 HDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGL 311 (631)
T ss_pred CchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeE
Confidence 99999888888889999998742 78899999999886 7899999988776643 11 13567899999
Q ss_pred HHHHHHHH
Q psy2417 377 MFNMAMGS 384 (391)
Q Consensus 377 ~~gga~~~ 384 (391)
++||+...
T Consensus 312 ~~gg~~l~ 319 (631)
T PRK07769 312 LNGSEPVS 319 (631)
T ss_pred EeccCCCC
Confidence 99998653
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=288.96 Aligned_cols=263 Identities=19% Similarity=0.253 Sum_probs=213.8
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
...|+.++|.+.++++|+++|+++.+ +.+||+||.++++++|.+|.+.|+++|++|+|+++|+++++++++||+
T Consensus 35 ~~~tl~~~l~~~a~~~p~~~Ai~~~~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~ 108 (600)
T PRK08279 35 SKRSLGDVFEEAAARHPDRPALLFED------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLA 108 (600)
T ss_pred CcccHHHHHHHHHHhCCCCcEEEeCC------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 45689999999999999999999866 789999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEeHHH
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIRFDE 238 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
++|++++|+++.++.+++.+++++++++++|++... ...+.+.... ....++..+..... ....+.+
T Consensus 109 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 177 (600)
T PRK08279 109 KLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEEL-VEAFEEARADLARPPRLWVAGGDTLD----------DPEGYED 177 (600)
T ss_pred hcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHH-HHHHHHHhhhhcccceEEEecCcccc----------ccccHHH
Confidence 999999999999999999999999999999998752 2222221111 11223333221100 0122333
Q ss_pred HHHhhhccC----CCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHH
Q psy2417 239 IERVGAQKM----FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLE 314 (391)
Q Consensus 239 l~~~~~~~~----~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 314 (391)
+........ .......++++++|+|||||||.||||+++|+++.+++.+....++ +.++|++++.+|++|.++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---l~~~d~~l~~~pl~h~~g 254 (600)
T PRK08279 178 LAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLR---LTPDDVLYCCLPLYHNTG 254 (600)
T ss_pred HhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcC---CCCCcEEEEecCchhhhh
Confidence 332221111 1112345789999999999999999999999999999988888777 899999999999999999
Q ss_pred HHHH-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHH
Q psy2417 315 RTCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK 363 (391)
Q Consensus 315 ~~~~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~ 363 (391)
+... +.++..|+++++.+. ++..+++.+.++++|++.++|++++.+.+.
T Consensus 255 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~ 305 (600)
T PRK08279 255 GTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQ 305 (600)
T ss_pred HHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhC
Confidence 9877 567788888888765 899999999999999999999999988765
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=290.42 Aligned_cols=288 Identities=18% Similarity=0.189 Sum_probs=219.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 80 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
+...++.++|++.++++|+++|+.+.+. .+.+||+||.++++++|++|.+.|+++|++|+|+++|+++++++++||
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~ai~~~~~----~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 88 (534)
T PRK05852 13 DFGPRIADLVEVAATRLPEAPALVVTAD----RIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAA 88 (534)
T ss_pred hhcccHHHHHHHHHHhCCCCcEEEecCC----CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence 4566899999999999999999987542 257999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHH
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEI 239 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (391)
+++|++++|+++.++.+++.+++++++++++|++... ...............+.+...... ..+.....+...
T Consensus 89 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 161 (534)
T PRK05852 89 SRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADG-PHDRAEPTTRWWPLTVNVGGDSGP------SGGTLSVHLDAA 161 (534)
T ss_pred HHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCC-cchhccccccccceeeeecccccc------cccccccccccc
Confidence 9999999999999999999999999999999998642 111111000011111111110000 000000011100
Q ss_pred HHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-
Q psy2417 240 ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE- 318 (391)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~- 318 (391)
.. ............++.++|+|||||||.||||+++|+++.+.+......+. +..+|++++.+|++|.+++...
T Consensus 162 ~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~p~~~~~g~~~~~ 236 (534)
T PRK05852 162 TE--PTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYR---LSPRDATVAVMPLYHGHGLIAAL 236 (534)
T ss_pred cC--CCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhC---CCCcceEEEecCcchhHHHHHHH
Confidence 00 00000111123578899999999999999999999999998888888777 8899999999999999999876
Q ss_pred HHHHHhCcEEEEeCC---CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHH---hcCchhHHHHHHHHHHH
Q psy2417 319 SAMFLVGGSIGYYSG---DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMA---QIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 319 ~~~L~~G~~vv~~~~---~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~---~~~~~slr~~~~gga~~ 383 (391)
+.+++.|+++++.+. ++..+++.++++++|+++++|.++..+.+.... ..+.+++|.++++|+..
T Consensus 237 ~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~ 307 (534)
T PRK05852 237 LATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPL 307 (534)
T ss_pred HHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCC
Confidence 788999999888542 788999999999999999999999999876332 23456888888777654
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=288.90 Aligned_cols=284 Identities=19% Similarity=0.261 Sum_probs=223.6
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
...++.++|...++++|+++|+.+.+ +.+||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++||+
T Consensus 5 ~~~~~~~~~~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~ 78 (528)
T PRK07470 5 RVMNLAHFLRQAARRFPDRIALVWGD------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAF 78 (528)
T ss_pred cCCCHHHHHHHHHHHCCCceEEEECC------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 35679999999999999999998865 689999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc--hhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHH
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK--CNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDE 238 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
++|++++|+++.++.+++.++++++++++++++.... ...+..... ....++.++... ....+++
T Consensus 79 ~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------------~~~~~~~ 145 (528)
T PRK07470 79 RLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASP-DLTHVVAIGGAR------------AGLDYEA 145 (528)
T ss_pred hCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCC-cCceEEEeCCCc------------ccccHHH
Confidence 9999999999999999999999999999999987621 111111111 344555554321 1234555
Q ss_pred HHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH
Q psy2417 239 IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE 318 (391)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 318 (391)
+...............++++++|+|||||||.||||+++|+++...+......... .+..+|+++..+|++|++++...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~ 224 (528)
T PRK07470 146 LVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMP-GTTEQDASLVVAPLSHGAGIHQL 224 (528)
T ss_pred HHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhcc-CCCcccEEEEeccchhHHHHHHH
Confidence 54332211122234567899999999999999999999999998665543332210 16788999999999999998754
Q ss_pred HHHHHhCcEEEEeCC---CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHH
Q psy2417 319 SAMFLVGGSIGYYSG---DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 319 ~~~L~~G~~vv~~~~---~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~~k 385 (391)
+ .++.|+++++.+. ++..+++.++++++|++.++|++++.+.+... ...+++++|.+++||+....
T Consensus 225 ~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~ 294 (528)
T PRK07470 225 C-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYR 294 (528)
T ss_pred H-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCH
Confidence 4 6778888877643 88999999999999999999999999877532 34567789999999876543
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=290.74 Aligned_cols=291 Identities=18% Similarity=0.190 Sum_probs=219.8
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
.++.+.|.+.++.+|+++|+.+.+ +.+||+||.++++++|.+|.+.|+++|++|+++++|+++|+++++||+++
T Consensus 20 ~~~~~~~~~~~~~~p~~~a~~~~~------~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~ 93 (567)
T PLN02479 20 LTPLWFLERAAVVHPTRKSVVHGS------VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMA 93 (567)
T ss_pred cCHHHHHHHHHhhCCCceEEEECC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhC
Confidence 468999999999999999998855 68999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHH---Hhhcc----c--CccEEEEecCcchHHHHHHhhCCceE
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQI---IDRAP----R--CLKKIISIREVRMATMQRARSRAIEI 233 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~---~~~~~----~--~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (391)
|++++|+++.++.+++.++++++++++++++... .+.. ..... . ....++.++.................
T Consensus 94 G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (567)
T PLN02479 94 GAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEF-FTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGA 172 (567)
T ss_pred CcEEEEeccccCHHHHHHHHhhcCceEEEEchhh-hhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCc
Confidence 9999999999999999999999999999998753 2221 11111 0 11234444321100000000001123
Q ss_pred EeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHH
Q psy2417 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHML 313 (391)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 313 (391)
..|+++................++.++|+|||||||.||||+++|+++..........+. +..+|++++.+|++|.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~h~~ 249 (567)
T PLN02479 173 IEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWG---MNEGAVYLWTLPMFHCN 249 (567)
T ss_pred ccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcC---CCCCCEEEEecchhhhh
Confidence 456665543221111111223457788999999999999999999998776655555565 78899999999999999
Q ss_pred HHHHHH-HHHHhCcEEEEeCCCHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHh--cCchhHHHHHHHHHHH
Q psy2417 314 ERTCES-AMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQ--IRPSFIKRLMFNMAMG 383 (391)
Q Consensus 314 g~~~~~-~~L~~G~~vv~~~~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~--~~~~slr~~~~gga~~ 383 (391)
++...+ ..++.|.++++...++..+++.+++++||++..+|.++..|.+..... .+++++|.++++|+..
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~ 322 (567)
T PLN02479 250 GWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAP 322 (567)
T ss_pred hHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCC
Confidence 987664 456667776665559999999999999999999999999998764322 2456888888887654
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=266.97 Aligned_cols=286 Identities=20% Similarity=0.195 Sum_probs=245.0
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
...|+.+++.+++.++||++|+++.+ +.+||+||+++++++|.+|+++|+++||+|.+-++|..+|.+++||++
T Consensus 26 ~d~~l~d~L~~~A~~~pdriAv~d~~------~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALl 99 (542)
T COG1021 26 QDRTLTDILTDHAARYPDRIAVIDGE------RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALL 99 (542)
T ss_pred cCCcHHHHHHHHHhhcCCceEEecCc------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHH
Confidence 46799999999999999999999988 679999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCc-------chhHHHhhcccCccEEEEecCcchHHHHHHhhCCceE
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDS-------KCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEI 233 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~-------~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (391)
+.|..+|.--|+....+|.+..+.++++.+|++... ....++...+ +++.+++.++....
T Consensus 100 rlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~-tlr~v~v~ge~~~~------------ 166 (542)
T COG1021 100 RLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHP-TLRHVIVAGEAEHP------------ 166 (542)
T ss_pred HcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCC-cceEEEEccCCCCc------------
Confidence 999999999999999999999999999999987651 1222333333 78888887553211
Q ss_pred EeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHH
Q psy2417 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHML 313 (391)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 313 (391)
...+...........+..+.+++++|+...+-||||.||-+..||.....++....+.++ ++.++++|+.+|.+|.|
T Consensus 167 ~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~---~~~~tvyL~~LP~AHNf 243 (542)
T COG1021 167 SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICG---FDQQTVYLCALPAAHNF 243 (542)
T ss_pred chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhC---cCccceEEEecccccCC
Confidence 112222222222222335567889999999999999999999999999999999999998 99999999999999999
Q ss_pred HHHHH--HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHH-HHHhcCchhHHHHHHHHHHHHHHHh
Q psy2417 314 ERTCE--SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK-VMAQIRPSFIKRLMFNMAMGSKENE 388 (391)
Q Consensus 314 g~~~~--~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~-~~~~~~~~slr~~~~gga~~~k~~~ 388 (391)
.+..- ++.++.||++|+.+. +|+.-+..|++++||+..+||.+...+++. .....+++|||.+-+|||..+.+..
T Consensus 244 plssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~A 322 (542)
T COG1021 244 PLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLA 322 (542)
T ss_pred CCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHH
Confidence 99866 899999999999876 999999999999999999999999999998 5678899999999999998876654
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=285.85 Aligned_cols=263 Identities=15% Similarity=0.162 Sum_probs=211.8
Q ss_pred CHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcC
Q psy2417 84 TLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYS 163 (391)
Q Consensus 84 tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G 163 (391)
++.+.|+++++++||++|+.+.+ ..+||.||.++++++|++|.+.|. +|++|+|+++|+++++++++||+++|
T Consensus 2 ~~~~~~~~~a~~~p~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G 74 (487)
T PRK07638 2 GITKEYKKHASLQPNKIAIKEND------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAG 74 (487)
T ss_pred ChHHHHHHHHHhCCCCeEEecCC------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 67899999999999999998876 689999999999999999999985 79999999999999999999999999
Q ss_pred CeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhh
Q psy2417 164 MIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVG 243 (391)
Q Consensus 164 ~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 243 (391)
++++|+++.++++++.++++.+++++++++... ...+.. ....++.++. +.+.....
T Consensus 75 ~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~-~~~~~~----~~~~~~~~~~------------------~~~~~~~~ 131 (487)
T PRK07638 75 WTCVPLDIKWKQDELKERLAISNADMIVTERYK-LNDLPD----EEGRVIEIDE------------------WKRMIEKY 131 (487)
T ss_pred eEEEecCccCCHHHHHHHHHhCCCCEEEEeccc-ccchhh----ccceEEEehh------------------hhhhhhhc
Confidence 999999999999999999999999999998752 211111 0112222221 11111111
Q ss_pred hccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHH
Q psy2417 244 AQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFL 323 (391)
Q Consensus 244 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~ 323 (391)
.. ...+.....+++++|+|||||||.||||+++|++++..+......++ +..+|+++...|++|..++...+.+++
T Consensus 132 ~~-~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~---~~~~d~~~~~~~l~~~~~l~~~~~~l~ 207 (487)
T PRK07638 132 LP-TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFH---MKREDSVLIAGTLVHSLFLYGAISTLY 207 (487)
T ss_pred cc-cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcC---cCCCCEEEEeecchHHHHHHHHHHHHc
Confidence 11 01111223567899999999999999999999999998887777777 889999999999999998877789999
Q ss_pred hCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q psy2417 324 VGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 324 ~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~ 383 (391)
.|+++++.+. ++..+++.++++++|++.++|+++..+.+.. .. ..+.++++++|+..
T Consensus 208 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--~~-~~~~~~~~~~G~~l 265 (487)
T PRK07638 208 VGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKEN--RV-IENKMKIISSGAKW 265 (487)
T ss_pred cCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc--Cc-CCceeEEEEcCCCC
Confidence 9999999866 8999999999999999999999999998751 12 22444556666543
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=287.93 Aligned_cols=293 Identities=19% Similarity=0.212 Sum_probs=226.7
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
...|+.++|++.++++||+++++... ++..+.+||+||.++++++|++|.+.|+++|++|+++++|+++++++++||+
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~ 85 (542)
T PRK06018 8 WPLLCHRIIDHAARIHGNREVVTRSV--EGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIM 85 (542)
T ss_pred CCCCHHHHHHHHHHhCCCceEEEeec--cCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHH
Confidence 34699999999999999999998532 2235789999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHH---hhcccCccEEEEecCcchHHHHHHhhCCceEEeHH
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQII---DRAPRCLKKIISIREVRMATMQRARSRAIEIIRFD 237 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~---~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (391)
++|++++|+++.++.+++.++++.+++++++++... ...+. .... .++.++.+.+.... ..........|+
T Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~ 159 (542)
T PRK06018 86 GIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTF-VPILEKIADKLP-SVERYVVLTDAAHM----PQTTLKNAVAYE 159 (542)
T ss_pred hcCeEeeccccccCHHHHHHHHhccCCCEEEEcccc-HHHHHHHHhhCC-CccEEEEecccccc----cccCccccccHH
Confidence 999999999999999999999999999999998753 22222 2222 44555554432100 000011233455
Q ss_pred HHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHH-HHH-HHHHHhhcCCCCCCCCEEEEcCChHHHHHH
Q psy2417 238 EIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI-AAI-SAALLQLSDHRPKYSDVLISFLPLAHMLER 315 (391)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~-~~~-~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 315 (391)
++....... .......++++++|+|||||||.||||++||++.+ ... ......++ +..+|+++..+|++|.+++
T Consensus 160 ~~~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~p~~h~~~~ 235 (542)
T PRK06018 160 EWIAEADGD-FAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALG---TSAADTMLPVVPLFHANSW 235 (542)
T ss_pred HHhccCCcc-cCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcC---CCCCCEEEEecCHHHHhhh
Confidence 554322111 11123456789999999999999999999999743 222 22334455 7889999999999999998
Q ss_pred HHHHHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHH
Q psy2417 316 TCESAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 316 ~~~~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~~k 385 (391)
...+.++..|+++++... ++..+++.+++++||++.++|+++..+.+... ...+++++|.+++||+....
T Consensus 236 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~ 308 (542)
T PRK06018 236 GIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPR 308 (542)
T ss_pred HHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCH
Confidence 877888999999998643 78899999999999999999999999987632 34466789999888876643
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=289.17 Aligned_cols=282 Identities=20% Similarity=0.213 Sum_probs=228.4
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
...++.+.+++.++.+|+++|+.+.+ +.+||.||.++++++|.+|.+.|+++|++|+|+++|+++|+++++||+
T Consensus 15 ~~~n~~~~~~~~a~~~~~~~a~~~~~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~ 88 (542)
T PRK07786 15 RRQNWVNQLARHALMQPDAPALRFLG------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAAN 88 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEeCC------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 45689999999999999999999876 689999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcc---cCccEEEEecCcchHHHHHHhhCCceEEeHH
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAP---RCLKKIISIREVRMATMQRARSRAIEIIRFD 237 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~---~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (391)
++|++++|+++..+.+++.++++++++++++++... . ....... ..++.++.+++.. ......++
T Consensus 89 ~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 156 (542)
T PRK07786 89 MLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAAL-A-PVATAVRDIVPLLSTVVVAGGSS----------DDSVLGYE 156 (542)
T ss_pred HcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccch-H-HHHHHhhhccCccceEEEecCCC----------cccccCHH
Confidence 999999999999999999999999999999998752 2 2222111 1445566554321 11234566
Q ss_pred HHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCC-CCCCEEEEcCChHHHHHHH
Q psy2417 238 EIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRP-KYSDVLISFLPLAHMLERT 316 (391)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~g~~ 316 (391)
++........ .......+++++|+|||||||.||||+++|+++...+......++ + ..++++++.+|++|.+|+.
T Consensus 157 ~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~g~~ 232 (542)
T PRK07786 157 DLLAEAGPAH-APVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNG---ADINSDVGFVGVPLFHIAGIG 232 (542)
T ss_pred HHhhccCCCC-CCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcC---CCCCCceEEEecchHHHHHHH
Confidence 6544322211 222345678999999999999999999999999988887777665 5 6789999999999999998
Q ss_pred HHHHHHHhCcEEEEeCC---CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy2417 317 CESAMFLVGGSIGYYSG---DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 317 ~~~~~L~~G~~vv~~~~---~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~ 384 (391)
..+.++..|+++++.+. ++..+++.++++++|.++++|+++..+...........++|.+++||+...
T Consensus 233 ~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~lr~i~~gg~~~~ 303 (542)
T PRK07786 233 SMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRDLALRVLSWGAAPAS 303 (542)
T ss_pred HHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccCcceEEEEECCCCCC
Confidence 77999999999998652 899999999999999999999999999875332222236777777777553
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=289.81 Aligned_cols=278 Identities=19% Similarity=0.211 Sum_probs=212.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEeecC---CCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHH
Q psy2417 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNI---SRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITE 156 (391)
Q Consensus 80 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~---~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~ 156 (391)
+...|+.++++++++.+|+++|+.+.+.. ++.++.+||+||.++++++|++|.+. +++|++|+|+++|+++|++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~ 109 (612)
T PRK12476 31 PPGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGF 109 (612)
T ss_pred CccCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHH
Confidence 34568999999999999999999875421 12346899999999999999999987 999999999999999999999
Q ss_pred HHHHhcCCeEEEc-cCCCC--HHHHHHHHHhcCccEEEEcCCcchhHHHhh---ccc-CccEEEEecCcchHHHHHHhhC
Q psy2417 157 QGAYCYSMIIVAL-YDTLG--PDACAFIINQAEISVLIVDDDSKCNQIIDR---APR-CLKKIISIREVRMATMQRARSR 229 (391)
Q Consensus 157 lA~~~~G~~~vpl-~~~~~--~~~l~~il~~~~~~~vi~~~~~~~~~~~~~---~~~-~l~~ii~~~~~~~~~~~~~~~~ 229 (391)
+||+++|+++||+ ++.++ .+++.+++++++++++|++... ...+... ... ....++.++...
T Consensus 110 lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~---------- 178 (612)
T PRK12476 110 FAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAA-AEAVEGFLRNLPRLRRPRVIAIDAIP---------- 178 (612)
T ss_pred HHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHH-HHHHHHHHhhcccccCceEEEecccc----------
Confidence 9999999999999 67776 8899999999999999998752 2222111 110 112344443210
Q ss_pred CceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCCh
Q psy2417 230 AIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPL 309 (391)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl 309 (391)
..... ........++++++|+|||||||.||||+++|+++.+++......+.. +.+++++++++|+
T Consensus 179 -----------~~~~~-~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~~~~~l~~~Pl 244 (612)
T PRK12476 179 -----------DSAGE-SFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDL--LDRNTHGVSWLPL 244 (612)
T ss_pred -----------ccccc-cccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhcc--CCCCceEEEeCCc
Confidence 00000 001123467899999999999999999999999998877665544431 4678999999999
Q ss_pred HHHHHHHHHHHHHHhCcEEEEeCC-----CHHhHHHHHH--hcCCcEEecChHHHHHHHHHH-----HHhcCchhHHHHH
Q psy2417 310 AHMLERTCESAMFLVGGSIGYYSG-----DIKNLTEDMK--TLKPTIMPAVPRLLNRMYDKV-----MAQIRPSFIKRLM 377 (391)
Q Consensus 310 ~h~~g~~~~~~~L~~G~~vv~~~~-----~~~~l~~~i~--~~~~t~~~~~P~~l~~l~~~~-----~~~~~~~slr~~~ 377 (391)
+|++|+...+.+++.|+++++... ++..+++.+. ++++|+++.+|.++..+.... ....+++++| ++
T Consensus 245 ~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~ 323 (612)
T PRK12476 245 YHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LI 323 (612)
T ss_pred ccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EE
Confidence 999999887766667777666542 7889999995 589999999999988877641 1244678899 88
Q ss_pred HHHHHHH
Q psy2417 378 FNMAMGS 384 (391)
Q Consensus 378 ~gga~~~ 384 (391)
+||+...
T Consensus 324 ~gg~~~~ 330 (612)
T PRK12476 324 IGSEPVS 330 (612)
T ss_pred ecccCCC
Confidence 9887653
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=283.74 Aligned_cols=253 Identities=19% Similarity=0.218 Sum_probs=207.4
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGL-GVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
...++.++|++.+. ++++|+.+.+ +++||+||.++++++|++|.++ |++++++|+++++|+++|+++++||
T Consensus 3 ~~~~~~~~l~~~a~--~~~~a~~~~~------~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~ 74 (529)
T PRK07867 3 SAPTVAELLLPLAE--DDDRGLYFED------SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAA 74 (529)
T ss_pred ccccHHHHHHHhcc--cCCceEEECC------cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 45579999988875 7899998866 7899999999999999999997 8999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHH
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEI 239 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (391)
+++|++++|+++.++.+++.++++++++++++++... . ..++.....+ .++.++. ..|.++
T Consensus 75 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~-~-~~~~~~~~~~-~~~~~~~----------------~~~~~~ 135 (529)
T PRK07867 75 ALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAH-A-ELLDGLDPGV-RVINVDS----------------PAWADE 135 (529)
T ss_pred HhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhH-H-HHHHhhccCc-eEEEecc----------------ccHHHH
Confidence 9999999999999999999999999999999998752 2 2222221122 1222221 113333
Q ss_pred HHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-
Q psy2417 240 ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE- 318 (391)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~- 318 (391)
...............++++++|+|||||||.||||+++|+++..........++ +..+|+++..+|++|.+++...
T Consensus 136 l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~---~~~~d~~l~~~pl~~~~~~~~~~ 212 (529)
T PRK07867 136 LAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFG---LGPDDVCYVSMPLFHSNAVMAGW 212 (529)
T ss_pred hcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhC---CCcccEEEEecchhHHHHHHHHH
Confidence 221111111223356789999999999999999999999999988888877777 8899999999999999999876
Q ss_pred HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHH
Q psy2417 319 SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK 363 (391)
Q Consensus 319 ~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~ 363 (391)
+.++..|+++++.+. ++..+++.++++++|++.++|+.+..+...
T Consensus 213 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~ 258 (529)
T PRK07867 213 AVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLAT 258 (529)
T ss_pred HHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhC
Confidence 678999999998765 899999999999999999999999988764
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=281.55 Aligned_cols=276 Identities=22% Similarity=0.305 Sum_probs=222.8
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
+.++.+++..++ .+|+++|+.+.+. +.+||+||.++++++|.+|+++|+++|++|+++++|+++++++++||++
T Consensus 2 ~~~l~~~~~~~~-~~~~~~a~~~~~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~ 75 (504)
T PRK07514 2 NNNLFDALRAAF-ADRDAPFIETPDG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLR 75 (504)
T ss_pred CccHHHHHHHHh-hCCCCeEEEeCCC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 457999999999 9999999987553 7899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc-CccEEEEecCcchHHHHHHhhCCceEEeHHHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR-CLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (391)
+|++++|+++.++.+++..+++.+++++++++... ...+...... ..+.++.++..... .+.+..
T Consensus 76 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 141 (504)
T PRK07514 76 AGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPAN-FAWLSKIAAAAGAPHVETLDADGTG-------------SLLEAA 141 (504)
T ss_pred cCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccch-hHHHHHhhhccCCceEEEecCCCcc-------------cHHHhh
Confidence 99999999999999999999999999999998753 2222222111 23334544432110 111111
Q ss_pred HhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-H
Q psy2417 241 RVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE-S 319 (391)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~-~ 319 (391)
.. ...........++++++|+|||||||.||||+++|+++...+......++ +..+|++++.+|++|..++... +
T Consensus 142 ~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~g~~~~~~ 217 (504)
T PRK07514 142 AA-APDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWR---FTPDDVLIHALPIFHTHGLFVATN 217 (504)
T ss_pred hh-cCcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhC---CCCccEEEEecchHHHHHHHHHHH
Confidence 11 01111123456899999999999999999999999999999887777777 8899999999999999998765 7
Q ss_pred HHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q psy2417 320 AMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 320 ~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~ 383 (391)
.+++.|+++++.+. ++..+++.+ .++|++..+|.++..+.+.. .....++++|.+++||+..
T Consensus 218 ~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~ 281 (504)
T PRK07514 218 VALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPL 281 (504)
T ss_pred HHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCC
Confidence 89999999999876 899999998 47999999999999887652 2344567899999988764
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=282.27 Aligned_cols=277 Identities=21% Similarity=0.237 Sum_probs=225.6
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..|+.++|.++++++|+++|+.+.+ +.+||+||.+++++++..|.+.|+++|++|+++++|+++++++++||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~ 84 (524)
T PRK06188 11 GATYGHLLVSALKRYPDRPALVLGD------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQL 84 (524)
T ss_pred CccHHHHHHHHHHHCCCCeEEEECC------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 4589999999999999999999876 6899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEeHHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIRFDEI 239 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (391)
.|++++|++|..+.+++.++++.++++.++++.......+...... .+..++.++.... +.++
T Consensus 85 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 149 (524)
T PRK06188 85 AGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPD---------------GVDL 149 (524)
T ss_pred hCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccc---------------hhhH
Confidence 9999999999999999999999999999999875322222211111 3344555443211 1111
Q ss_pred HHhhhcc--CCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHH
Q psy2417 240 ERVGAQK--MFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTC 317 (391)
Q Consensus 240 ~~~~~~~--~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 317 (391)
....... ........++++++|+|||||||.||||+++|.++.+.+......++ +..+|++++.+|++|.+++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~---~~~~~~~l~~~pl~~~~g~~- 225 (524)
T PRK06188 150 LAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWE---WPADPRFLMCTPLSHAGGAF- 225 (524)
T ss_pred HHhhhccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcC---CCcCcEEEEecCchhhhhHH-
Confidence 1111100 00111234567999999999999999999999999999888888877 88999999999999998875
Q ss_pred HHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q psy2417 318 ESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 318 ~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~ 383 (391)
.+.+++.|+++++.+. ++..+++.++++++|++..+|+++..+++.. ....+++++|.+++||+..
T Consensus 226 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~ 293 (524)
T PRK06188 226 FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPM 293 (524)
T ss_pred HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCC
Confidence 4788999999999876 8999999999999999999999999998763 3345677999998888644
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=281.50 Aligned_cols=285 Identities=18% Similarity=0.255 Sum_probs=222.2
Q ss_pred CHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcC
Q psy2417 84 TLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYS 163 (391)
Q Consensus 84 tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G 163 (391)
|+.++|++.++++||++|+.+.+ +.+||.||.++++++|++|.+.|+++|++|+++++|+++|+++++||+++|
T Consensus 4 ~l~~~~~~~a~~~p~~~a~~~~~------~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G 77 (533)
T PRK07798 4 NIADLFEAVADAVPDRVALVCGD------RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKAR 77 (533)
T ss_pred cHHHHHHHHHHhCCCceEEEECC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Confidence 78999999999999999999866 789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEeHHHHHH
Q psy2417 164 MIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIRFDEIER 241 (391)
Q Consensus 164 ~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (391)
++++|+++.++.+++.++++++++++++++... ...+.+.... .++.++.++..... ......+.++++..
T Consensus 78 ~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 150 (533)
T PRK07798 78 AVPVNVNYRYVEDELRYLLDDSDAVALVYEREF-APRVAEVLPRLPKLRTLVVVEDGSGN------DLLPGAVDYEDALA 150 (533)
T ss_pred eEEEecCcCCCHHHHHHHHhhcCCCEEEEchhh-HHHHHHHhccCCCccEEEEecCCccc------ccCCccccHHHHHh
Confidence 999999999999999999999999999998752 3333322221 44566666543211 00112446666654
Q ss_pred hhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCC------CC------CCCCEEEEcCCh
Q psy2417 242 VGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDH------RP------KYSDVLISFLPL 309 (391)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~------~~------~~~d~~l~~~pl 309 (391)
..... ........+.++|+|||||||.||||+++|+++...+......+... .+ ..+++++..+|+
T Consensus 151 ~~~~~--~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 228 (533)
T PRK07798 151 AGSPE--RDFGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPL 228 (533)
T ss_pred ccCCc--CCCCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecch
Confidence 32221 11112334567999999999999999999999987655433322100 01 567899999999
Q ss_pred HHHHHHHHHHHHHHhCcEEEEeC--C-CHHhHHHHHHhcCCcEEecChHHHHH-HHHHH--HHhcCchhHHHHHHHHHHH
Q psy2417 310 AHMLERTCESAMFLVGGSIGYYS--G-DIKNLTEDMKTLKPTIMPAVPRLLNR-MYDKV--MAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 310 ~h~~g~~~~~~~L~~G~~vv~~~--~-~~~~l~~~i~~~~~t~~~~~P~~l~~-l~~~~--~~~~~~~slr~~~~gga~~ 383 (391)
+|++++...+.+|+.|+++++.+ . ++..+++.++++++|.+.++|..+.. +.+.. ....+++++|.+++||+..
T Consensus 229 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~ 308 (533)
T PRK07798 229 MHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALF 308 (533)
T ss_pred hhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCC
Confidence 99999998899999999999987 4 89999999999999999999876644 33332 2334567899888888755
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=280.56 Aligned_cols=274 Identities=22% Similarity=0.269 Sum_probs=222.1
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
.++.++|+++++.+|+++|+.+.+ +.+||.||.++++++|.+|.+.|++++++|+++++|+++++++++||+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~------~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~ 75 (497)
T PRK06145 2 FNLSASIAFHARRTPDRAALVYRD------QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYL 75 (497)
T ss_pred ccHHHHHHHHHHHCCCceEEEECC------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 468899999999999999998876 68999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHh
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERV 242 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (391)
|++++|+++.++.+++.++++++++++++++... ..... ....++.++..... .+..+..
T Consensus 76 G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~--~~~~~----~~~~~~~~~~~~~~-------------~~~~~~~- 135 (497)
T PRK06145 76 GAVFLPINYRLAADEVAYILGDAGAKLLLVDEEF--DAIVA----LETPKIVIDAAAQA-------------DSRRLAQ- 135 (497)
T ss_pred CcEEEecccccCHHHHHHHHHhcCCcEEEEccch--hhhhh----cccceEEecCcccc-------------hhHHHhc-
Confidence 9999999999999999999999999999998753 11111 01122333321100 0111111
Q ss_pred hhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-HHH
Q psy2417 243 GAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE-SAM 321 (391)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~-~~~ 321 (391)
............++++++|+|||||||.||||+++|+++..........++ +..+|+++..+|++|.+++... +.+
T Consensus 136 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~ 212 (497)
T PRK06145 136 GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALG---LTASERLLVVGPLYHVGAFDLPGIAV 212 (497)
T ss_pred cCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhC---CCCCcEEEEecCchhHhHHHHHHHHH
Confidence 111111123356789999999999999999999999999877666666666 8899999999999999999766 788
Q ss_pred HHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHH
Q psy2417 322 FLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 322 L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~k 385 (391)
++.|+++++.+. ++..+++.++++++|++.++|+++..++... ....+++++|.+++||+...+
T Consensus 213 l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~ 278 (497)
T PRK06145 213 LWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPE 278 (497)
T ss_pred HhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCH
Confidence 999999998776 9999999999999999999999999998753 234456789999999876644
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=283.45 Aligned_cols=286 Identities=20% Similarity=0.258 Sum_probs=221.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 80 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
+...|+.+++.+.++.+|+++|+.+... .+.+||+||.++++++|++|.+.|+++|++|+++++|+++++++++||
T Consensus 25 ~~~~~~~~~l~~~a~~~p~~~a~~~~~~----~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~ 100 (546)
T PLN02330 25 PDKLTLPDFVLQDAELYADKVAFVEAVT----GKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGI 100 (546)
T ss_pred CCCCcHHHHHhhhhhcCCCccEEEecCC----CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence 3457899999999999999999986421 168999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHH
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEI 239 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (391)
+++|++++|+++.++.+++.++++++++++++++... ...+ ... .+ .++.++... ......|+++
T Consensus 101 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~-~~~--~~-~~i~~~~~~----------~~~~~~~~~~ 165 (546)
T PLN02330 101 MAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTN-YGKV-KGL--GL-PVIVLGEEK----------IEGAVNWKEL 165 (546)
T ss_pred HHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccch-hhhH-hhc--CC-cEEEecCCC----------CCCcccHHHH
Confidence 9999999999999999999999999999999998763 2222 111 12 234443321 0112345665
Q ss_pred HHhhhccCC--CCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHH
Q psy2417 240 ERVGAQKMF--EEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTC 317 (391)
Q Consensus 240 ~~~~~~~~~--~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 317 (391)
......... ......++++++|+|||||||.||||+++|+++...+......... .....++.+..+|++|.+++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~p~~h~~g~~~ 244 (546)
T PLN02330 166 LEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGP-EMIGQVVTLGLIPFFHIYGITG 244 (546)
T ss_pred HhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCc-cccCceEEEEecChHHHHHHHH
Confidence 543221111 1223457899999999999999999999999998876533222210 1234568999999999999876
Q ss_pred H-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCch--hHHHHHHHHHHHHH
Q psy2417 318 E-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPS--FIKRLMFNMAMGSK 385 (391)
Q Consensus 318 ~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~--slr~~~~gga~~~k 385 (391)
. +.+|..|+++++.+. ++..+++.++++++|++.++|.++..+.+.. ..+.++. ++|.+++||+....
T Consensus 245 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~ 317 (546)
T PLN02330 245 ICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAP 317 (546)
T ss_pred HHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCH
Confidence 5 788999999998876 9999999999999999999999999998752 2233333 46788888876543
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=285.06 Aligned_cols=282 Identities=20% Similarity=0.242 Sum_probs=214.8
Q ss_pred HHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEccCCHHHHHHHHHHHhcCC
Q psy2417 86 YDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLG-LGVNPGSFVGIYSQNCPEWIITEQGAYCYSM 164 (391)
Q Consensus 86 ~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~ 164 (391)
..+|.+ +.+|+++|+++... ...+||+||.++++++|++|.+ .|+++|++|+++++|+++|++++|||+++|+
T Consensus 44 ~~l~~~--~~~~~~~a~~~~~~----~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 117 (560)
T PLN02574 44 SFIFSH--HNHNGDTALIDSST----GFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGG 117 (560)
T ss_pred HHHhcC--cccCCCCEEEECCC----CCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCe
Confidence 344544 67899999987542 1379999999999999999999 9999999999999999999999999999999
Q ss_pred eEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhh
Q psy2417 165 IIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGA 244 (391)
Q Consensus 165 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (391)
+++|++|.++.+++.++++++++++++++.+. ...+.. . ... ++.++..... .........|+++.....
T Consensus 118 v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~-~--~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 187 (560)
T PLN02574 118 IVTTMNPSSSLGEIKKRVVDCSVGLAFTSPEN-VEKLSP-L--GVP-VIGVPENYDF-----DSKRIEFPKFYELIKEDF 187 (560)
T ss_pred EEeCcCcccCHHHHHHHHHhcCCEEEEECHHH-HHHHHh-c--CCc-EEecCccccc-----ccCccCcccHHHHhhcCC
Confidence 99999999999999999999999999998752 222221 1 112 2222211000 000112234555443322
Q ss_pred ccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCC--CCCCCCEEEEcCChHHHHHHHHH-HHH
Q psy2417 245 QKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDH--RPKYSDVLISFLPLAHMLERTCE-SAM 321 (391)
Q Consensus 245 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~--~~~~~d~~l~~~pl~h~~g~~~~-~~~ 321 (391)
... ......++++++|+|||||||.||||+++|+++.+.+.......... ....+++++..+|++|.+|+... +.+
T Consensus 188 ~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~ 266 (560)
T PLN02574 188 DFV-PKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGL 266 (560)
T ss_pred ccc-ccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHH
Confidence 111 12234678999999999999999999999999998876654321100 13457899999999999999876 677
Q ss_pred HHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH--HhcCchhHHHHHHHHHHHH
Q psy2417 322 FLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM--AQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 322 L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~~slr~~~~gga~~~ 384 (391)
+..|+++++.+. ++..+++.|+++++|+++++|.++..|.+... ...+++++|.+++||+...
T Consensus 267 l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~ 332 (560)
T PLN02574 267 LSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLS 332 (560)
T ss_pred HhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCC
Confidence 888999998876 99999999999999999999999999987632 3456789999999998654
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=278.73 Aligned_cols=251 Identities=19% Similarity=0.230 Sum_probs=204.8
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCC-CCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGV-NPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv-~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
.|+.++|.+++ .|+++|+.+.+ ..+||+||.++++++|.+|.++|+ ++|++|+++++|+++|+++++||++
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~~------~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~ 74 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYGD------RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAAL 74 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEECC------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHh
Confidence 47888888764 79999998866 689999999999999999999999 7999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIER 241 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (391)
+|++++|++|.++.+++.++++++++++++++... ...+.+.....++ ++.++.. .+.++..
T Consensus 75 ~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~~~-~i~~~~~----------------~~~~~~~ 136 (540)
T PRK13388 75 GGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEH-RPLLDGLDLPGVR-VLDVDTP----------------AYAELVA 136 (540)
T ss_pred CCCEEEEecccCChHHHHHHHHhcCCCEEEEChhh-hHHHHhhcccCce-EEEccch----------------hhhhhhc
Confidence 99999999999999999999999999999998752 2222211011222 2333221 1222221
Q ss_pred hhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-HH
Q psy2417 242 VGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE-SA 320 (391)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~-~~ 320 (391)
.... ..+.....++++++|+|||||||.||||+++|+++..........++ +..+|+++..+|++|.+++... +.
T Consensus 137 ~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~~~~~~~~~ 212 (540)
T PRK13388 137 AAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFG---LTRDDVCYVSMPLFHSNAVMAGWAP 212 (540)
T ss_pred cccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhC---CCCCCEEEEeeCchhhcchHHHHHH
Confidence 1111 11112346799999999999999999999999999988888777777 8899999999999999998776 56
Q ss_pred HHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHH
Q psy2417 321 MFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK 363 (391)
Q Consensus 321 ~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~ 363 (391)
+|..|+++++.+. ++..+++.++++++|++..+|..+..+...
T Consensus 213 ~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~ 256 (540)
T PRK13388 213 AVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILAT 256 (540)
T ss_pred HHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhC
Confidence 8999999998765 899999999999999999999999888754
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=280.24 Aligned_cols=295 Identities=23% Similarity=0.267 Sum_probs=222.8
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..|+.++|++.++.+|+++|+.+.+ +.+||.||.++++++|.+|.++|+++|++|+++++|+++++++++||++
T Consensus 20 ~~~~~~~~~~~~~~~p~~~a~~~~~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~ 93 (541)
T TIGR03205 20 RGTLPDLLSKAAADYGPRPALEFRD------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALK 93 (541)
T ss_pred CCCHHHHHHHHHHHcCCCceEEECC------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 4589999999999999999998866 6899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcch-hHHHhhccc-CccEEEEecCcchHH--HHHH-hhCCceEEeH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKC-NQIIDRAPR-CLKKIISIREVRMAT--MQRA-RSRAIEIIRF 236 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-~~~~~~~~~-~l~~ii~~~~~~~~~--~~~~-~~~~~~~~~~ 236 (391)
+|++++|++|.++.+++.+++++++++.++++..... ..+.+.... .+..++.++...... .... .........+
T Consensus 94 ~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (541)
T TIGR03205 94 AGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTY 173 (541)
T ss_pred cCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccH
Confidence 9999999999999999999999999999999863111 111111111 233444443211000 0000 0011234456
Q ss_pred HHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcC---CCCCCCCEEEEcCChHHHH
Q psy2417 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD---HRPKYSDVLISFLPLAHML 313 (391)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~ 313 (391)
+++....... .......++++++|+|||||||.||||+++|+++....... ..+.. ......+++++.+|++|.+
T Consensus 174 ~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~ 251 (541)
T TIGR03205 174 ADFVKGAAAP-AEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHIY 251 (541)
T ss_pred HHHHhcCCCC-CCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHHH
Confidence 6655422111 11123467899999999999999999999999998655422 22110 0123457999999999999
Q ss_pred HHHHH-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Q psy2417 314 ERTCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 314 g~~~~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~ 384 (391)
++... +.++..|+++++.+. ++..+++.|.++++|++.++|+++..+.+.. ....+++++|.+++||+...
T Consensus 252 ~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~ 325 (541)
T TIGR03205 252 ALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLP 325 (541)
T ss_pred HHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCC
Confidence 98876 788999999988765 8999999999999999999999999887642 23345678999999987653
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=283.89 Aligned_cols=266 Identities=15% Similarity=0.161 Sum_probs=204.2
Q ss_pred HHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCC
Q psy2417 85 LYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSM 164 (391)
Q Consensus 85 l~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~ 164 (391)
+.+.|+++++++|+++|+.+.+ ++.++++||+||.++++++|.+|.++ ++|++|+|+++|++++++++|||+++|+
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~~--~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~ 79 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDRE--SGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGA 79 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCCC--CCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCC
Confidence 7889999999999999998865 23478999999999999999999988 7999999999999999999999999999
Q ss_pred eEEEccCC--------CCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeH
Q psy2417 165 IIVALYDT--------LGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236 (391)
Q Consensus 165 ~~vpl~~~--------~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (391)
+++ +++. ...+++.+++++++++++|++... ...+..... . +.+.+ +
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~-~~~~~~~~~-~----~~~~~------------------~ 134 (525)
T PRK05851 80 AVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSH-LERLRAVDS-S----VTVHD------------------L 134 (525)
T ss_pred CCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHH-HHHHHHhhc-c----ccccc------------------c
Confidence 865 4432 233566678999999999998652 222211110 0 00100 0
Q ss_pred HHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCC-CCCEEEEcCChHHHHHH
Q psy2417 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPK-YSDVLISFLPLAHMLER 315 (391)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~-~~d~~l~~~pl~h~~g~ 315 (391)
...... ..........+++++||+|||||||.||||+++|+++.+.+......++ +. ++|++++++|++|++++
T Consensus 135 ~~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~---~~~~~d~~l~~~pl~h~~g~ 209 (525)
T PRK05851 135 ATAAHT--NRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVG---LDAATDVGCSWLPLYHDMGL 209 (525)
T ss_pred cccccc--cccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhC---CCCCCCeEEEcCCCccCccH
Confidence 000000 0000112246789999999999999999999999999999888887777 77 89999999999999999
Q ss_pred HHHHHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH--HHhcCchhHHHHHHHHHHHH
Q psy2417 316 TCESAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV--MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 316 ~~~~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~--~~~~~~~slr~~~~gga~~~ 384 (391)
...+.+++.|+++++.+. ++..+++.+.++++|++..+|.++..+.+.. ....++++||.+++||++..
T Consensus 210 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~ 285 (525)
T PRK05851 210 AFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVD 285 (525)
T ss_pred HHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCC
Confidence 888999999999999762 5778999999999998866555555443322 13456789999999998753
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=305.71 Aligned_cols=287 Identities=20% Similarity=0.230 Sum_probs=227.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 80 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
+...++.+.|++.++++|+++|+.+.+. +.+||+||.++++++|++|.+ ++++|++|+++++|+++++++++||
T Consensus 612 ~~~~~l~~~~~~~a~~~p~~~a~~~~~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~ 685 (1146)
T PRK08633 612 EALPPLAEAWIDTAKRNWSRLAVADSTG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLAL 685 (1146)
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEcCCC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHH
Confidence 4457899999999999999999986432 689999999999999999987 4899999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHh-----hcccCccEEEEecCcchHHHHHHhhCCceEE
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIID-----RAPRCLKKIISIREVRMATMQRARSRAIEII 234 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~-----~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (391)
+++|++++|+++..+.+++.++++++++++++++... .+.+.+ ... ....++.+++...... ...
T Consensus 686 ~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~ 755 (1146)
T PRK08633 686 LLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKF-LEKLKNKGFDLELP-ENVKVIYLEDLKAKIS--------KVD 755 (1146)
T ss_pred HHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHH-HHHHhccCCchhcc-cCceEEEeehhccccc--------hhH
Confidence 9999999999999999999999999999999998642 222221 111 2234444443211000 000
Q ss_pred eHHHHHHhhh-c----cCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCCh
Q psy2417 235 RFDEIERVGA-Q----KMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPL 309 (391)
Q Consensus 235 ~~~~l~~~~~-~----~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl 309 (391)
.+.+...... . .........++|+++|+|||||||.||||+++|+++.+.+......++ +.++|++++.+|+
T Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~---~~~~d~~l~~~p~ 832 (1146)
T PRK08633 756 KLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFN---LRNDDVILSSLPF 832 (1146)
T ss_pred HHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcC---CCCCCEEEEcCcH
Confidence 1111111000 0 000013356799999999999999999999999999999888877777 8899999999999
Q ss_pred HHHHHHHHH-HHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHH
Q psy2417 310 AHMLERTCE-SAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 310 ~h~~g~~~~-~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~k 385 (391)
+|.+|+... +.++..|+++++.+. ++..+++.++++++|++.++|++++.+.+.. ..+.+++++|.+++||+....
T Consensus 833 ~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~ 912 (1146)
T PRK08633 833 FHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKP 912 (1146)
T ss_pred HHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCH
Confidence 999999875 889999999998764 8899999999999999999999999988753 345567899999999986543
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=279.95 Aligned_cols=287 Identities=19% Similarity=0.196 Sum_probs=214.2
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
.+..++|++.++.+|+++|+.+.+ ..+||+||.++++++|.+|.+.|+++|++|+++++|++++++++|||+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~a~~~~~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~ 91 (545)
T PRK08162 18 LTPLSFLERAAEVYPDRPAVIHGD------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMA 91 (545)
T ss_pred CCHHHHHHHHHHHCCCCeEEEECC------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHh
Confidence 578899999999999999998865 68999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc-CccEEEEecCcchHHHHHHhhCCceEEeHHHHHH
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR-CLKKIISIREVRMATMQRARSRAIEIIRFDEIER 241 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (391)
|++++|+++.++.+++.+++++++++.++++... ...+.+.... ....++.++...... .....+....++++..
T Consensus 92 G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 167 (545)
T PRK08162 92 GAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEF-AEVAREALALLPGPKPLVIDVDDPEY---PGGRFIGALDYEAFLA 167 (545)
T ss_pred CcEEeccccccChHHHHHHHHhCCCeEEEEccch-hhHHHHHHhhCCCCceEEEecCcccc---ccCCCcccccHHHHhc
Confidence 9999999999999999999999999999998863 2222221111 111123332211100 0011123345555543
Q ss_pred hhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHH
Q psy2417 242 VGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM 321 (391)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~ 321 (391)
..........+.+.+++++|+|||||||.||||+++|+++..........+. +..++++++.+|++|.+++...+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~---~~~~~~~l~~~pl~h~~~~~~~~~~ 244 (545)
T PRK08162 168 SGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWG---MPKHPVYLWTLPMFHCNGWCFPWTV 244 (545)
T ss_pred cCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcC---CCCCCeeEeccCcHhhhhHHHHHHH
Confidence 3211111112234568999999999999999999999998777666555555 7788999999999999998776544
Q ss_pred HHhCcEEEEeC-CCHHhHHHHHHhcCCcEEecChHHHHHHHHHHHH-hcCchhHHHHHHHHHH
Q psy2417 322 FLVGGSIGYYS-GDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMA-QIRPSFIKRLMFNMAM 382 (391)
Q Consensus 322 L~~G~~vv~~~-~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~-~~~~~slr~~~~gga~ 382 (391)
.+.|++.++.. .++..+++.++++++|++.++|+++..|.+.... ...+.+.+.++++|+.
T Consensus 245 ~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~ 307 (545)
T PRK08162 245 AARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAA 307 (545)
T ss_pred HHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCC
Confidence 44555555544 4999999999999999999999999999875321 2223344444555543
|
|
| >KOG1179|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=259.87 Aligned_cols=265 Identities=16% Similarity=0.200 Sum_probs=219.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 80 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
....|++++|..+++++|+++|+++.+. .+.+||+|++++++++|+.|...|++.||.|+++++|++||+...|+.
T Consensus 74 r~~~ti~~~F~~~vrr~p~k~aii~~~~----~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGL 149 (649)
T KOG1179|consen 74 RERRTIAELFLSQVRRQPDKPAIIYEGP----FQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGL 149 (649)
T ss_pred ccCCcHHHHHHHHHHhCCCccEEEEeCC----CceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhH
Confidence 3467999999999999999999999873 478999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc---CccEEEEecCcchHHHHHHhhCCceEEeH
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR---CLKKIISIREVRMATMQRARSRAIEIIRF 236 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~---~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (391)
+++|++..-|++++..+-+.|-++-++++.+|++.+. ...+.+..+. .--.+..++.... ....
T Consensus 150 aKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el-~~~~~e~~~~l~~~~i~~~~~~~~~~------------~~g~ 216 (649)
T KOG1179|consen 150 AKLGVITAFINTNLRGEPLLHSITVSGARALVVGPEL-LNALEEILPLLIKNGIHVFSLGPTSV------------PDGI 216 (649)
T ss_pred HhhCceeeeeccccccchhhhhhhhcCceEEEECHHH-HHHHHhcchhhhhccceEEecCCCCC------------CchH
Confidence 9999999999999999999999999999999999862 3333333232 1112233322111 0112
Q ss_pred HHHHHhhhccCCCC------CCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChH
Q psy2417 237 DEIERVGAQKMFEE------VPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLA 310 (391)
Q Consensus 237 ~~l~~~~~~~~~~~------~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 310 (391)
+++...-......+ ...+-.++++.||||||||.||..+++|.-+..........++ ++++|+++..+||+
T Consensus 217 ~~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g---~~~~DvvY~~lPLY 293 (649)
T KOG1179|consen 217 ESLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFG---MTADDVVYTTLPLY 293 (649)
T ss_pred HHHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhC---CCccceEEEcchhH
Confidence 23333222222222 2235677999999999999999999999999988887888888 99999999999999
Q ss_pred HHHHHHHH-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH
Q psy2417 311 HMLERTCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV 364 (391)
Q Consensus 311 h~~g~~~~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~ 364 (391)
|..+.+.. ..+|..|+|+|+-.. +...||+++.+|++|+..-+-.+++-|+++.
T Consensus 294 Hsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p 349 (649)
T KOG1179|consen 294 HSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQP 349 (649)
T ss_pred HHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCC
Confidence 99999988 789999999999765 9999999999999999999999999998873
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=278.38 Aligned_cols=265 Identities=17% Similarity=0.214 Sum_probs=218.8
Q ss_pred CHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcC
Q psy2417 84 TLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYS 163 (391)
Q Consensus 84 tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G 163 (391)
++.+.|++.++.+|+++|+.+.+ +.+||+||.+++.++|..|.+.|+++|++|+|+++|+.+|+++++||+++|
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G 74 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQG------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSG 74 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcCC------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhC
Confidence 46789999999999999998876 689999999999999999999999999999999999999999999999999
Q ss_pred CeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhh
Q psy2417 164 MIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVG 243 (391)
Q Consensus 164 ~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 243 (391)
++++|+++.++.+++.++++..+++.++++.... .... ... ++.++. ...+....
T Consensus 75 ~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~-~~~~-----~~~-~~~~~~------------------~~~~~~~~ 129 (502)
T TIGR01734 75 HAYIPVDTSIPSERIEMIIEAAGPELVIHTAELS-IDAV-----GTQ-IITLSA------------------LEQAETSG 129 (502)
T ss_pred CEEeCCCCcChHHHHHHHHHhcCCCEEEeccccc-cccc-----CCc-eEEchH------------------hhhhhhhc
Confidence 9999999999999999999999999999987531 1110 111 121111 01111111
Q ss_pred hccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHH
Q psy2417 244 AQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFL 323 (391)
Q Consensus 244 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~ 323 (391)
.. ........+++.++|+|||||||.||||+++|+++.+.+.+....+. +..+++++..+|++|.+++...+.++.
T Consensus 130 ~~-~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~---~~~~~~~l~~~p~~~~~~~~~~~~~l~ 205 (502)
T TIGR01734 130 GP-VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFP---LSEGKQFLNQAPFSFDLSVMDLYPCLA 205 (502)
T ss_pred CC-ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCC---CCCCceEEeecCceechhHHHHHHHHH
Confidence 10 11112346789999999999999999999999999999888877776 889999999999999999988899999
Q ss_pred hCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q psy2417 324 VGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 324 ~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~ 383 (391)
.|+++++.+. ++..+++.+.++++|.+..+|.++..+.... ....+++++|.++++|+..
T Consensus 206 ~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~ 270 (502)
T TIGR01734 206 SGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEEL 270 (502)
T ss_pred CCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcC
Confidence 9999998764 7889999999999999999999998876552 2344567899989888754
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=278.09 Aligned_cols=268 Identities=18% Similarity=0.157 Sum_probs=212.6
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
...++.+.|.++++.+|+++|+.+.+ +.+||+|+.++++++|++|.+.|+++|++|+++++|++++++++|||+
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~ 106 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDDD------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVG 106 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeCC------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 45689999999999999999998755 589999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHH
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (391)
++|+++||+++.++.+++.++++++++++++++... ...+.. .. ..++.++... ..
T Consensus 107 ~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~-~~---~~~~~~~~~~-------------------~~ 162 (516)
T PRK13383 107 LLGADVVPISTEFRSDALAAALRAHHISTVVADNEF-AERIAG-AD---DAVAVIDPAT-------------------AG 162 (516)
T ss_pred HhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhH-HHHHHh-hh---cceEEeccch-------------------hh
Confidence 999999999999999999999999999999998752 222211 11 1222222210 00
Q ss_pred HhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHH--HHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH
Q psy2417 241 RVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAA--ISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE 318 (391)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~--~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 318 (391)
.. .. ...+...++.++|+|||||||.||||+++|...... .......++ +..+|+++..+|++|.+|+...
T Consensus 163 ~~--~~--~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~pl~h~~g~~~~ 235 (516)
T PRK13383 163 AE--ES--GGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTR---LRTGSRISVAMPMFHGLGLGML 235 (516)
T ss_pred hh--cC--CCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhc---cCCCCeEEEecCCcchhhHHHH
Confidence 00 00 011223466789999999999999999999843221 122223344 7889999999999999999887
Q ss_pred HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH---HhcCchhHHHHHHHHHHHHH
Q psy2417 319 SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM---AQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 319 ~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~---~~~~~~slr~~~~gga~~~k 385 (391)
+.++..|+++++... ++..+++.++++++|.+.++|.++..+.+... ...+++++|.+++||+....
T Consensus 236 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~ 306 (516)
T PRK13383 236 MLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDP 306 (516)
T ss_pred HHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCH
Confidence 889999999988765 89999999999999999999999999876532 23346689999999877543
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=276.64 Aligned_cols=295 Identities=18% Similarity=0.212 Sum_probs=220.6
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.++|.+.++++|+++|+.+.+ +.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||++
T Consensus 22 ~~~i~~~l~~~a~~~p~~~a~~~~~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~ 95 (557)
T PRK07059 22 YPSLADLLEESFRQYADRPAFICMG------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLR 95 (557)
T ss_pred CCCHHHHHHHHHHHcCCCceEEEcC------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876 7899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc-CccEEEEecCcch-HHHH----H---------H
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR-CLKKIISIREVRM-ATMQ----R---------A 226 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~-~~~~----~---------~ 226 (391)
+|++++|++|.++.+++.+++++++++++++++.. ...+...... .++.++....... .... . .
T Consensus 96 ~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (557)
T PRK07059 96 AGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENF-ATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVP 174 (557)
T ss_pred cCeEEeccCcccCHHHHHHHHHccCceEEEEchhh-HHHHHHhhcccCCceeEEeccccccccccccccccccccccccc
Confidence 99999999999999999999999999999998752 1212111111 2333333221000 0000 0 0
Q ss_pred hhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCC-CC---CCCCE
Q psy2417 227 RSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDH-RP---KYSDV 302 (391)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~-~~---~~~d~ 302 (391)
.........++++...+......+....++++++|+|||||||.||||+++|++++.++.......... .. ...+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (557)
T PRK07059 175 AWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLN 254 (557)
T ss_pred ccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcE
Confidence 000112234555544332222223345688999999999999999999999999987765443322110 01 12457
Q ss_pred EEEcCChHHHHHHHHH-HHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHH
Q psy2417 303 LISFLPLAHMLERTCE-SAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMF 378 (391)
Q Consensus 303 ~l~~~pl~h~~g~~~~-~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~ 378 (391)
+++.+|++|.+++... +.++..|++.++.+. ++..+++.++++++|.+..+|.++..+.+.. ....+++++|.++.
T Consensus 255 ~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~ 334 (557)
T PRK07059 255 FVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANG 334 (557)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEe
Confidence 8889999999997655 778888998777654 8899999999999999999999999988762 23456678998888
Q ss_pred HHHHH
Q psy2417 379 NMAMG 383 (391)
Q Consensus 379 gga~~ 383 (391)
||+..
T Consensus 335 gg~~~ 339 (557)
T PRK07059 335 GGMAV 339 (557)
T ss_pred ccccC
Confidence 88653
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=278.55 Aligned_cols=296 Identities=20% Similarity=0.231 Sum_probs=219.7
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGL-GVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
.++.++|+++++.+|+++|+.+.+ +.+||.||.++++++|++|.+. |+++|++|+++++|+++|+++++||++
T Consensus 24 ~~~~~~l~~~~~~~p~~~a~~~~~------~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~ 97 (562)
T PRK12492 24 KSVVEVFERSCKKFADRPAFSNLG------VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALR 97 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEecCC------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 479999999999999999998765 6899999999999999999985 999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc-CccEEEEecCc--chHHHHH-------------
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR-CLKKIISIREV--RMATMQR------------- 225 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~l~~ii~~~~~--~~~~~~~------------- 225 (391)
+|++++|+++.++.+++.++++++++++++++... ...+...... ....++..... .......
T Consensus 98 ~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (562)
T PRK12492 98 AGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMF-GKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMV 176 (562)
T ss_pred cCeEEeccCccCCHHHHHHHHhccCceEEEecccc-chHHHHhhhccCceEEEeechhhccccccchhcccccccccccc
Confidence 99999999999999999999999999999997642 1211111110 11122111100 0000000
Q ss_pred HhhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCC------CCCC
Q psy2417 226 ARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDH------RPKY 299 (391)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~------~~~~ 299 (391)
..........|+++...+......+.+...+++++|+|||||||.||||+++|+++...+......+... .+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 256 (562)
T PRK12492 177 PAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKE 256 (562)
T ss_pred cccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccC
Confidence 0000012245666554332222223345678999999999999999999999999988776655544210 0122
Q ss_pred -CCEEEEcCChHHHHHHHHH-HHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHH
Q psy2417 300 -SDVLISFLPLAHMLERTCE-SAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIK 374 (391)
Q Consensus 300 -~d~~l~~~pl~h~~g~~~~-~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr 374 (391)
+++++..+|++|.+++... +..+..|+++++... ++..+++.++++++|++..+|.++..+.+.. ....+++++|
T Consensus 257 ~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr 336 (562)
T PRK12492 257 GQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALK 336 (562)
T ss_pred CCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCccccccccee
Confidence 3578999999999998766 667788888776542 8899999999999999999999999988752 2345677899
Q ss_pred HHHHHHHHHHH
Q psy2417 375 RLMFNMAMGSK 385 (391)
Q Consensus 375 ~~~~gga~~~k 385 (391)
.+++||+....
T Consensus 337 ~~~~gG~~~~~ 347 (562)
T PRK12492 337 LTNSGGTALVK 347 (562)
T ss_pred EEEeccccCCH
Confidence 99999876543
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=274.23 Aligned_cols=264 Identities=17% Similarity=0.187 Sum_probs=220.5
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
.++.++|+++++.+|+++++.+.+ +.+||+||.++++++|.+|.++|+++|++|+++++|+.+|+++++||+++
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~~~------~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~ 75 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDYLG------EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKA 75 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEeCC------cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 368899999999999999998766 68999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHh
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERV 242 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (391)
|++++|+++.++.+++.++++.+++++++++.... .. . . .+..+.++++...
T Consensus 76 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~-~---------------------~~~~~~~~~~~~~ 127 (503)
T PRK04813 76 GHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELP--LE----I-L---------------------GIPVITLDELKDI 127 (503)
T ss_pred CCEEecCCCCChHHHHHHHHHhcCCCEEEeccccc--cc----c-c---------------------CCcEEehHHhhhh
Confidence 99999999999999999999999999999987531 00 0 0 1112233333221
Q ss_pred hh--ccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHH
Q psy2417 243 GA--QKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESA 320 (391)
Q Consensus 243 ~~--~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~ 320 (391)
.. ..........++++++++|||||||.||||.++|+++...+......+. +..+++++..+|++|..++...+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~ 204 (503)
T PRK04813 128 FATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFA---LPEGPQFLNQAPYSFDLSVMDLYP 204 (503)
T ss_pred hhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcC---CCcCceeeecCCcchhHhHHHHHH
Confidence 11 1111123346788999999999999999999999999998888777776 889999999999999999988889
Q ss_pred HHHhCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q psy2417 321 MFLVGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 321 ~L~~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~ 383 (391)
+|..|+++++.+. ++..+++.+.++++|++..+|++++.+.... ....+++++|.++++|+..
T Consensus 205 ~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l 272 (503)
T PRK04813 205 TLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEEL 272 (503)
T ss_pred HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcC
Confidence 9999999998764 7889999999999999999999998876552 3345667899988888754
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=278.26 Aligned_cols=277 Identities=17% Similarity=0.186 Sum_probs=221.2
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.++|+++++ |+++|+++.+ +.+||+||.++++++|.+|.+.|+++|++|+++++|+++|+++++||++
T Consensus 24 ~~~~~~~~~~~a~--p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~ 95 (536)
T PRK10946 24 DLPLTDILTRHAA--SDAIAVICGE------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLK 95 (536)
T ss_pred CccHHHHHHHhhC--CCCeEEEeCC------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHH
Confidence 4589999999887 9999999866 6899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc-------hhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEE
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK-------CNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-------~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (391)
+|++++++.+..+.+++.++++++++++++++.... ...+....+ .++.++..+... ..
T Consensus 96 ~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~-------------~~ 161 (536)
T PRK10946 96 LGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHS-SLRVVLLLNDDG-------------EH 161 (536)
T ss_pred cCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCC-CceEEEEecCCC-------------Cc
Confidence 999888777788888999999999999999986421 111111111 334444332211 11
Q ss_pred eHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHH
Q psy2417 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLE 314 (391)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 314 (391)
.+.++....... ....+..++++++|+|||||||.||||+++|+++...+......++ +..+|++++.+|++|.++
T Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~---~~~~~~~l~~~p~~h~~~ 237 (536)
T PRK10946 162 SLDDAINHPAED-FTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICG---FTPQTRYLCALPAAHNYP 237 (536)
T ss_pred cHHHHhhCcccc-cccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcC---CCCCceEEEecCcccccc
Confidence 233333222111 1123446789999999999999999999999999999988887777 889999999999999998
Q ss_pred HHH--HHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH---HhcCchhHHHHHHHHHHHH
Q psy2417 315 RTC--ESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM---AQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 315 ~~~--~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~---~~~~~~slr~~~~gga~~~ 384 (391)
+.. .+.+|..|+++++.+. ++..+++.++++++|++.++|.++..+.+... ....++++|.+++||+...
T Consensus 238 ~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~ 313 (536)
T PRK10946 238 MSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLS 313 (536)
T ss_pred chhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCC
Confidence 764 4788999999998765 88999999999999999999999999987632 2234568888888887553
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=300.20 Aligned_cols=283 Identities=20% Similarity=0.192 Sum_probs=219.6
Q ss_pred CCCCHHHHHHHHHHhcCC-CceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNN-GRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd-~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
...++.+.|+++++++|+ +.++.+.+. +.+||+||+++++++|++|++ |+++|++|+++++|+++++++++||
T Consensus 629 ~~~~~~~~l~~~~~~~~~~~~ai~~~~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~ 702 (1140)
T PRK06814 629 YDRTLFEALIEAAKIHGFKKLAVEDPVN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFAL 702 (1140)
T ss_pred ccCCHHHHHHHHHHHcCCCCeEeECCCC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHH
Confidence 346788889999888874 566654332 689999999999999999975 9999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc----hhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEe
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK----CNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIR 235 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~----~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (391)
+++|++++|+|+.++.+++.++++++++++++++.... .....+..+ ....++.+++.... ...
T Consensus 703 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~-----------~~~ 770 (1140)
T PRK06814 703 QSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALE-FGIRIIYLEDVRAQ-----------IGL 770 (1140)
T ss_pred HHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhc-cCceEEEehHhhcc-----------CCh
Confidence 99999999999999999999999999999999986421 011111122 22344444432100 001
Q ss_pred HHHHHHhhhcc-CC-CCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHH
Q psy2417 236 FDEIERVGAQK-MF-EEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHML 313 (391)
Q Consensus 236 ~~~l~~~~~~~-~~-~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 313 (391)
++.+....... .. ......++|+++|+|||||||.||||+++|+++.+.+......++ +.++|++++.+|++|.+
T Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~---~~~~d~~l~~~pl~h~~ 847 (1140)
T PRK06814 771 ADKIKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARID---FSPEDKVFNALPVFHSF 847 (1140)
T ss_pred HHHHHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhC---CCCcCEEEEecchHHHH
Confidence 11111110000 00 011346899999999999999999999999999999888887777 88999999999999999
Q ss_pred HHHHH-HHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q psy2417 314 ERTCE-SAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 314 g~~~~-~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~k 385 (391)
++... +.++..|+++++.+. +...+.+.++++++|++..+|++++.+.+. ....+++++|.+++||+....
T Consensus 848 g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~-~~~~~~~~lr~v~~gg~~l~~ 921 (1140)
T PRK06814 848 GLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARY-AHPYDFRSLRYVFAGAEKVKE 921 (1140)
T ss_pred HHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhh-cccccccceeEEEEcCCcCCH
Confidence 99554 889999999998764 667788999999999999999999988765 234567799999999976543
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=272.38 Aligned_cols=279 Identities=19% Similarity=0.199 Sum_probs=219.5
Q ss_pred CHHHHHHHH-HHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 84 TLYDAFRKG-AKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 84 tl~~~l~~~-~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
...+++.+. ++.+||++|+...+ +.+||.||.++++++|++|.+.|+++|++|+++++|+++|+++++||+++
T Consensus 5 ~~~~~~~~~~~~~~p~~~a~~~~~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~ 78 (508)
T TIGR02262 5 AAEDLLDRNVVEGRGGKTAFIDDI------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRA 78 (508)
T ss_pred HHHHHHHHHHhcccCCceEEEeCC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 346677776 67799999998755 78999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEeHHHHH
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (391)
|++++|+++.++.+++.++++.+++++++++... ...+.+.... .++.++..+.... ....+.++.
T Consensus 79 G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 146 (508)
T TIGR02262 79 GIVPVALNTLLTADDYAYMLEDSRARVVFVSGEL-LPVIKAALGKSPHLEHRVVVGRPEA-----------GEVQLAELL 146 (508)
T ss_pred CcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhh-HHHHHHHHhcCCCccEEEEeCCCCc-----------ccccHHHHh
Confidence 9999999999999999999999999999998752 3332222111 4455555543211 112343333
Q ss_pred HhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHH-HHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-
Q psy2417 241 RVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA-ALLQLSDHRPKYSDVLISFLPLAHMLERTCE- 318 (391)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~- 318 (391)
..... ...+....++++++|+|||||||.||||+++|+++...+.. ....++ +..+|+++..+|++|++++...
T Consensus 147 ~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~~~~~~~ 222 (508)
T TIGR02262 147 ATESE-QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLG---IREDDVVFSAAKLFFAYGLGNAL 222 (508)
T ss_pred hcCCC-ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcC---CCCCCEEEEcCchHHHHHHHHHH
Confidence 22111 11223345789999999999999999999999999987765 344455 8899999999999999999765
Q ss_pred HHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHHH
Q psy2417 319 SAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 319 ~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~~ 384 (391)
+.++..|+++++.+. ++..+++.+++++||++.++|.++..+..... ......++|.+++||+...
T Consensus 223 ~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~ 291 (508)
T TIGR02262 223 TFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALP 291 (508)
T ss_pred HHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCC
Confidence 678999999998764 78999999999999999999999988765421 2234458888888886543
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=275.19 Aligned_cols=285 Identities=18% Similarity=0.218 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.++|+++++.+|+++|+.+.+ +.+||.||.++++++|.+|.++|+++|++|+++++|+++|+++++||++
T Consensus 32 ~~~l~~~l~~~a~~~p~~~al~~~~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~ 105 (567)
T PRK06178 32 ERPLTEYLRAWARERPQRPAIIFYG------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILK 105 (567)
T ss_pred cccHHHHHHHHHHHCCCceEEEECC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHH
Confidence 3589999999999999999998876 6899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc-CccEEEEecCcchHHH-HHH-hhCC-----ceE
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR-CLKKIISIREVRMATM-QRA-RSRA-----IEI 233 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~~~~-~~~-~~~~-----~~~ 233 (391)
+|++++|++|.++.+++.++++++++++++++... ...+.+.... .++.++..+....... ... .... ...
T Consensus 106 ~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~-~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (567)
T PRK06178 106 LGAVHVPVSPLFREHELSYELNDAGAEVLLALDQL-APVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAA 184 (567)
T ss_pred hCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccch-HHHHHHhhccCCcceEEEeccccccccccccccccccccccccc
Confidence 99999999999999999999999999999998752 3333222211 3344443321110000 000 0000 000
Q ss_pred EeHHHHHHhhhc--cCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHh-hcCCCCCCCCEEEEcCChH
Q psy2417 234 IRFDEIERVGAQ--KMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQ-LSDHRPKYSDVLISFLPLA 310 (391)
Q Consensus 234 ~~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~~~~d~~l~~~pl~ 310 (391)
..+.++...... .........++++++|+|||||||.||||++||++++..+...... .. +..+|++++.+|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~---~~~~d~~l~~~p~~ 261 (567)
T PRK06178 185 AGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVV---GGEDSVFLSFLPEF 261 (567)
T ss_pred cccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhcc---CCCCcEEEEecchH
Confidence 112222221111 1111233567999999999999999999999999998876554443 33 78899999999999
Q ss_pred HHHHHHHH-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHH
Q psy2417 311 HMLERTCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRL 376 (391)
Q Consensus 311 h~~g~~~~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~ 376 (391)
|.+|+... +.+++.|+++++.+. ++..+++.++++++|.+..+|..+..+.+.. ....+++++|.+
T Consensus 262 ~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~ 330 (567)
T PRK06178 262 WIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQV 330 (567)
T ss_pred HHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheee
Confidence 99998655 789999999999876 8999999999999999999999998887642 223344555544
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=276.05 Aligned_cols=294 Identities=24% Similarity=0.315 Sum_probs=221.0
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHH-hCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLL-GLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
.++.++|.+.++.+|+++|+++.+ +.+||+||.++++++|.+|. +.|+++|++|+++++|+++++++++||++
T Consensus 25 ~~~~~~l~~~~~~~~~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 98 (560)
T PRK08751 25 RTVAEVFATSVAKFADRPAYHSFG------KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLR 98 (560)
T ss_pred CcHHHHHHHHHHhCCCCceEEECC------ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 479999999999999999998866 78999999999999999997 68999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc-CccEEEEecCcch-----H----H-HHH-Hh--
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR-CLKKIISIREVRM-----A----T-MQR-AR-- 227 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~-----~----~-~~~-~~-- 227 (391)
+|++++|++|.++.+++.+++++++++++++++.. ...+.+.... ....++..+.... . . ... ..
T Consensus 99 ~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (560)
T PRK08751 99 AGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNF-GTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLV 177 (560)
T ss_pred hCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchh-HHHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhccc
Confidence 99999999999999999999999999999998753 2222222211 2233433221000 0 0 000 00
Q ss_pred --hCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCC-CCCC-CCEE
Q psy2417 228 --SRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDH-RPKY-SDVL 303 (391)
Q Consensus 228 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~-~~~~-~d~~ 303 (391)
..-.....+++................++++++|+|||||||.||||+++|.++...+......+... .+.. ++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (560)
T PRK08751 178 PEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVV 257 (560)
T ss_pred cccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceE
Confidence 00011223444443322221222334678999999999999999999999999998877665544311 0223 4677
Q ss_pred EEcCChHHHHHHHHH-HHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHH
Q psy2417 304 ISFLPLAHMLERTCE-SAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFN 379 (391)
Q Consensus 304 l~~~pl~h~~g~~~~-~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~g 379 (391)
+..+|++|.+++... +..+..|+++++... ++..+++.++++++|++..+|.++..+.+.. ..+.++++||.+++|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~g 337 (560)
T PRK08751 258 ITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGG 337 (560)
T ss_pred EEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeC
Confidence 889999999998765 677888888877653 8899999999999999999999999988752 344567899999999
Q ss_pred HHHH
Q psy2417 380 MAMG 383 (391)
Q Consensus 380 ga~~ 383 (391)
|+..
T Consensus 338 G~~~ 341 (560)
T PRK08751 338 GMAV 341 (560)
T ss_pred CCCC
Confidence 8754
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=273.56 Aligned_cols=293 Identities=20% Similarity=0.257 Sum_probs=216.1
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
.++.++|++.++.+|+++|+.+.+ +.+||+||.+++.++|++|.+.|+++|++|+++++|++++++++|||+++
T Consensus 24 ~~~~~~~~~~a~~~p~~~a~~~~~------~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 97 (563)
T PRK06710 24 QPLHKYVEQMASRYPEKKALHFLG------KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLA 97 (563)
T ss_pred ccHHHHHHHHHHHCCCceEEEecC------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHc
Confidence 579999999999999999999876 78999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc-CccEEEEecCcc-----hH-HHHHHhh-------
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR-CLKKIISIREVR-----MA-TMQRARS------- 228 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~l~~ii~~~~~~-----~~-~~~~~~~------- 228 (391)
|++++|++|.++.+++.++++.+++++++++... ...+...... ....++...... .. .......
T Consensus 98 G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (563)
T PRK06710 98 GGIVVQTNPLYTERELEYQLHDSGAKVILCLDLV-FPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVV 176 (563)
T ss_pred CeEEeccCcccCHHHHHHHHhccCCeEEEEeccc-hhhhhccchhhccceeEEeccccccccccccccchhhcccccccc
Confidence 9999999999999999999999999999998752 2221111110 222222211000 00 0000000
Q ss_pred ---CCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHh-hcCCCCCCCCEEE
Q psy2417 229 ---RAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQ-LSDHRPKYSDVLI 304 (391)
Q Consensus 229 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~~~~d~~l 304 (391)
.......|+.+.... ...........+++++|+|||||||.||||+++|+++.......... +.. ...+++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~--~~~~~~~l 253 (563)
T PRK06710 177 KVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNC--KEGEEVVL 253 (563)
T ss_pred cccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCC--CCCCceEE
Confidence 000000122221111 00001111235789999999999999999999999998654333332 220 23456889
Q ss_pred EcCChHHHHHHHHH-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHH-HHHhcCchhHHHHHHHHH
Q psy2417 305 SFLPLAHMLERTCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK-VMAQIRPSFIKRLMFNMA 381 (391)
Q Consensus 305 ~~~pl~h~~g~~~~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~-~~~~~~~~slr~~~~gga 381 (391)
+.+|++|.+|+... +.+++.|+++++.+. ++..+++.|+++++|++.++|+++..+.+. .....+++++|.+++||+
T Consensus 254 ~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~ 333 (563)
T PRK06710 254 GVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSA 333 (563)
T ss_pred EeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCC
Confidence 99999999998766 678999999998765 899999999999999999999999998875 223446679999999997
Q ss_pred HHHH
Q psy2417 382 MGSK 385 (391)
Q Consensus 382 ~~~k 385 (391)
...+
T Consensus 334 ~~~~ 337 (563)
T PRK06710 334 PLPV 337 (563)
T ss_pred cCCH
Confidence 6543
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=272.56 Aligned_cols=257 Identities=17% Similarity=0.144 Sum_probs=207.2
Q ss_pred HHHHHhcCCCceEEEe-ecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEE
Q psy2417 90 RKGAKESNNGRCLGWR-QNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVA 168 (391)
Q Consensus 90 ~~~~~~~pd~~al~~~-~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vp 168 (391)
+.+++.+||++|+.+. +. +.+||+||.++++++|.+|.+.|+.+|++|+++++|+++|++++|||+++|++++|
T Consensus 2 ~~~a~~~p~~~a~~~~~~~-----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 76 (488)
T PRK09088 2 AFHARLQPQRLAAVDLALG-----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVP 76 (488)
T ss_pred chhhhhCCCceEEEecCCC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEe
Confidence 4567889999999763 22 68999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhhcc-C
Q psy2417 169 LYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQK-M 247 (391)
Q Consensus 169 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 247 (391)
+++.++.+++.++++++++++++++..... . .. ....++++....... .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~-----~---~~----------------------~~~~~~~~~~~~~~~~~ 126 (488)
T PRK09088 77 LNWRLSASELDALLQDAEPRLLLGDDAVAA-----G---RT----------------------DVEDLAAFIASADALEP 126 (488)
T ss_pred eCccCCHHHHHHHHHhCCCCEEEEcchhhc-----c---cc----------------------cccchhhhhhhcccccc
Confidence 999999999999999999999999874210 0 00 001122221111111 1
Q ss_pred CCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-HHHHHhCc
Q psy2417 248 FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE-SAMFLVGG 326 (391)
Q Consensus 248 ~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~-~~~L~~G~ 326 (391)
.......++++++++|||||||.||||.++|+++...+........ ...+|++++.+|++|++++... +.++..|+
T Consensus 127 ~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~---~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~ 203 (488)
T PRK09088 127 ADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGR---VDAHSSFLCDAPMFHIIGLITSVRPVLAVGG 203 (488)
T ss_pred ccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhC---CCCCcEEEEecchHHHHHHHHHHHHHHhcCC
Confidence 1112335688999999999999999999999999988777766665 7889999999999999999876 67888999
Q ss_pred EEEEeCC-CHHhHHHHHH--hcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Q psy2417 327 SIGYYSG-DIKNLTEDMK--TLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 327 ~vv~~~~-~~~~l~~~i~--~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~ 384 (391)
++++.+. ++..++..+. ++++|+++.+|.+++.+.+.. ....+++++|.+++||+...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~ 265 (488)
T PRK09088 204 SILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHA 265 (488)
T ss_pred EEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCC
Confidence 9998765 7888888886 489999999999999887653 23345678999999997653
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=277.78 Aligned_cols=275 Identities=18% Similarity=0.220 Sum_probs=206.5
Q ss_pred CHHHHHHHHHHhcCCCceEEEeecC---CCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 84 TLYDAFRKGAKESNNGRCLGWRQNI---SRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 84 tl~~~l~~~~~~~pd~~al~~~~~~---~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
++.++|++.+..+|+++|+.+.+.. .+..+.+||+||..+++++|++|.++| .+|++|+|+++|+++|++++|||+
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~ 80 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGAL 80 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHH
Confidence 6789999999999999999875421 122478999999999999999999999 689999999999999999999999
Q ss_pred hcCCeEEEccC---CCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc----CccEEEEecCcchHHHHHHhhCCceE
Q psy2417 161 CYSMIIVALYD---TLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR----CLKKIISIREVRMATMQRARSRAIEI 233 (391)
Q Consensus 161 ~~G~~~vpl~~---~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~----~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (391)
++|+++||+++ ..+.+++.++++++++++++++... ...+...... ....++.++.
T Consensus 81 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------- 143 (578)
T PRK05850 81 QAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAV-VDDVTEYVAPQPGQSAPPVIEVDL---------------- 143 (578)
T ss_pred HcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHH-HHHHHHHHhhcccccccceEeecc----------------
Confidence 99999999997 5578999999999999999998752 2222211110 1112222211
Q ss_pred EeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhh-cCC--CCCCCCEEEEcCChH
Q psy2417 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQL-SDH--RPKYSDVLISFLPLA 310 (391)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~-~~~--~~~~~d~~l~~~pl~ 310 (391)
+. .............++++++|+|||||||.||||+++|+++++.+......+ ... ....++++++.+|++
T Consensus 144 -----~~-~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~ 217 (578)
T PRK05850 144 -----LD-LDSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFY 217 (578)
T ss_pred -----cc-cccCCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCC
Confidence 00 000000011234578999999999999999999999999998876655432 210 134688999999999
Q ss_pred HHHHHHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHH-HHHHHHHH----HHhcCchhHHHHHHH
Q psy2417 311 HMLERTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRL-LNRMYDKV----MAQIRPSFIKRLMFN 379 (391)
Q Consensus 311 h~~g~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~-l~~l~~~~----~~~~~~~slr~~~~g 379 (391)
|++|+... +.+++.|+++++.+. ++..+++.+++++++++ .+|.+ +..+.... ....+++++|.+++|
T Consensus 218 h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~g 296 (578)
T PRK05850 218 HDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISG 296 (578)
T ss_pred CCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEEC
Confidence 99998765 899999999999763 68999999999999866 55554 44443321 123456789999999
Q ss_pred HHHH
Q psy2417 380 MAMG 383 (391)
Q Consensus 380 ga~~ 383 (391)
|+..
T Consensus 297 g~~~ 300 (578)
T PRK05850 297 SERV 300 (578)
T ss_pred cCCC
Confidence 8754
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=274.53 Aligned_cols=279 Identities=19% Similarity=0.204 Sum_probs=213.7
Q ss_pred cCCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHH
Q psy2417 79 YDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQG 158 (391)
Q Consensus 79 ~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA 158 (391)
.+...++.++|+..++.+|+..++ ..+ ++.++.+||.||+++++++|.+|.++|+++|++|+++++|+++|+++++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA 93 (579)
T PRK09192 17 YADFPTLVEALDYAALGEAGMNFY-DRR--GQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFA 93 (579)
T ss_pred ccchhhHHHHHHHhhccCCceEEE-ecC--CCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHH
Confidence 345579999999999998865543 322 22347899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEccCCCC-------HHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCc
Q psy2417 159 AYCYSMIIVALYDTLG-------PDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAI 231 (391)
Q Consensus 159 ~~~~G~~~vpl~~~~~-------~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (391)
|+++|++++|+++.++ .+++.++++.+++++++++... ...+.+... ....+
T Consensus 94 ~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~-~~~~~~~~~-~~~~~------------------- 152 (579)
T PRK09192 94 CQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDEL-LPWVNEATH-GNPLL------------------- 152 (579)
T ss_pred HHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHH-HHHHHHhhc-ccccc-------------------
Confidence 9999999999987543 6899999999999999998752 222222111 11111
Q ss_pred eEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHH-hhcCCCCCCCCEEEEcCChH
Q psy2417 232 EIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALL-QLSDHRPKYSDVLISFLPLA 310 (391)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~-~~~~~~~~~~d~~l~~~pl~ 310 (391)
....++++........ ......++++++|+|||||||.||||+++|++++..+..... .++ +.++|+++.++|++
T Consensus 153 ~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~---~~~~d~~l~~~p~~ 228 (579)
T PRK09192 153 HVLSHAWFKALPEADV-ALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLK---VRPGDRCVSWLPFY 228 (579)
T ss_pred ceeehhhhcccCCCcc-ccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhccc---CCCCCeEEEeCCCC
Confidence 1223333322211111 112345789999999999999999999999999998877776 666 88999999999999
Q ss_pred HHHHHHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH----HHhcCchhHHHHHHHH
Q psy2417 311 HMLERTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV----MAQIRPSFIKRLMFNM 380 (391)
Q Consensus 311 h~~g~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~----~~~~~~~slr~~~~gg 380 (391)
|++|+... +.++..|+++++.+. ++..+++.+.++++|++..+|.++..+.... ....+++++|.+++||
T Consensus 229 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG 308 (579)
T PRK09192 229 HDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGA 308 (579)
T ss_pred CcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecC
Confidence 99999876 678999999987652 6889999999999998877666565554332 1235678999999998
Q ss_pred HHHHH
Q psy2417 381 AMGSK 385 (391)
Q Consensus 381 a~~~k 385 (391)
+....
T Consensus 309 ~~l~~ 313 (579)
T PRK09192 309 DMIRP 313 (579)
T ss_pred ccCCH
Confidence 77643
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=287.09 Aligned_cols=278 Identities=14% Similarity=0.179 Sum_probs=204.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 80 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
+...++.++|+++++++||++|+.+.+ +.+||+||+++++++|++|+++|+++|++|+|+++|+++|+++++||
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~~~------~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~ 517 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLFDG------RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAAL 517 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEeCC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 345689999999999999999999866 68999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHH
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEI 239 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (391)
+++|++++|++|. +++.+++++++++++|++... ...+.. ....++.++........ .........++++
T Consensus 518 ~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~-~~~~~~----~~~~iiv~~~~~~~~~~--~~~~~~~~~~~~~ 587 (994)
T PRK07868 518 SRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTN-LEAARQ----LPGRVLVLGGGESRDLD--LPDDADVIDMEKI 587 (994)
T ss_pred HhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHH-HHHHHh----cCceEEEecCCcccccc--CCcchhhhhhhhc
Confidence 9999999999985 689999999999999998642 232221 12345555432100000 0000001111111
Q ss_pred HHhhhccC--CCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHH
Q psy2417 240 ERVGAQKM--FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTC 317 (391)
Q Consensus 240 ~~~~~~~~--~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 317 (391)
........ ..+.+..++|++||+|| ||||.||++.++|.+...........+. +..+|++++.+|++|++++..
T Consensus 588 ~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~---l~~~d~~L~~~Pl~h~~gl~~ 663 (994)
T PRK07868 588 DPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAA---LDRRDTVYCLTPLHHESGLLV 663 (994)
T ss_pred CcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcC---CCCCCeEEEecChHHHhHHHH
Confidence 11000000 01112246899999999 6888888888888776655444445555 889999999999999999988
Q ss_pred HHHHH-HhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHH
Q psy2417 318 ESAMF-LVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLM 377 (391)
Q Consensus 318 ~~~~L-~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~ 377 (391)
.+.++ ..|+++++.+. ++..+++.|++++||+++++|++++.+.+... ...++++||.++
T Consensus 664 ~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~ 726 (994)
T PRK07868 664 SLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFI 726 (994)
T ss_pred HHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEe
Confidence 75544 44555555544 99999999999999999999999999987522 233556787655
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-32 Score=266.94 Aligned_cols=268 Identities=18% Similarity=0.179 Sum_probs=202.1
Q ss_pred HHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEcc
Q psy2417 91 KGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALY 170 (391)
Q Consensus 91 ~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~ 170 (391)
.+++.+|+++|+.+.+. .+.+||+||.++++++|++|.++|+++|++|+++++|++++++++|||+++|++++|++
T Consensus 5 ~~a~~~p~~~a~~~~~~----~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~ 80 (501)
T PRK13390 5 THAQIAPDRPAVIVAET----GEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAIN 80 (501)
T ss_pred hhhhhCCCCcEEEecCC----CeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccc
Confidence 45678999999987431 26899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhhccCCCC
Q psy2417 171 DTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEE 250 (391)
Q Consensus 171 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 250 (391)
+.++++++.++++++++++++++.. ...............+.+..... ....+++.... . .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~---~--~~ 142 (501)
T PRK13390 81 HHLTAPEADYIVGDSGARVLVASAA--LDGLAAKVGADLPLRLSFGGEID-----------GFGSFEAALAG---A--GP 142 (501)
T ss_pred cCCCHHHHHHHHHhcCCcEEEEcch--hhhHHHHhhhccceEEEecCccc-----------ccccHHHHhcc---c--CC
Confidence 9999999999999999999999764 22222211111112222221100 11123322211 0 01
Q ss_pred CCCCCCCceEEEecCCCCCCCcEEEe--ehhHHHHHH----HHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHh
Q psy2417 251 VPPKPTDLCTICYTSGTTGNPKGVML--THGNVIAAI----SAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLV 324 (391)
Q Consensus 251 ~~~~~~~~a~i~~TSGSTG~PKgV~~--th~~l~~~~----~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~ 324 (391)
......++++|+|||||||.||||++ +|.++.... ......+. +..+|++++.+|++|.+++...+..+..
T Consensus 143 ~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~h~~~~~~~~~~~~~ 219 (501)
T PRK13390 143 RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYD---ISESDIYYSSAPIYHAAPLRWCSMVHAL 219 (501)
T ss_pred CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhC---CCCCCeEEecccchhhhHHHHHHHHHhc
Confidence 11123357999999999999999995 566655432 11223344 7889999999999999998766667788
Q ss_pred CcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH---HHhcCchhHHHHHHHHHHH
Q psy2417 325 GGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV---MAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 325 G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~---~~~~~~~slr~~~~gga~~ 383 (391)
|+++++.+. ++..+++.|+++++|++.++|+++..+.+.. ....+++++|.++.||+..
T Consensus 220 g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~ 282 (501)
T PRK13390 220 GGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPC 282 (501)
T ss_pred CceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCC
Confidence 999998765 8999999999999999999999999887642 2334567999999888764
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=269.16 Aligned_cols=294 Identities=20% Similarity=0.272 Sum_probs=216.4
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLG-LGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
..++.++|++.++.+|+++|+.+.+ +.+||+||.++++++|.+|.+ .|+++|++|+++++|++++++++|||+
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~~------~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~ 95 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINMG------EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGIL 95 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEECC------ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 4579999999999999999998765 689999999999999999984 899999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc--hhHHHhhcccCccEEEEecCcch--HHHH-------H-H--
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK--CNQIIDRAPRCLKKIISIREVRM--ATMQ-------R-A-- 226 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--~~~~~~~~~~~l~~ii~~~~~~~--~~~~-------~-~-- 226 (391)
++|++++|++|.++.+++.++++.+++++++++.... ...+.... ..+.++....... .... . .
T Consensus 96 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (560)
T PRK08974 96 RAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKT--PVKHVILTRMGDQLSTAKGTLVNFVVKYIKR 173 (560)
T ss_pred HcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhc--CcceEEEecccccccccccccccchhhhccc
Confidence 9999999999999999999999999999999976521 11111111 2233332211000 0000 0 0
Q ss_pred ---hhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEE
Q psy2417 227 ---RSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVL 303 (391)
Q Consensus 227 ---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~ 303 (391)
.........+.+....+...........++++++|+|||||||.||||.++|+++..++......+.......++++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~ 253 (560)
T PRK08974 174 LVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELV 253 (560)
T ss_pred ccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEE
Confidence 00000112222222222111111122467899999999999999999999999999877654443321113456788
Q ss_pred EEcCChHHHHHHHHH-HHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHH
Q psy2417 304 ISFLPLAHMLERTCE-SAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFN 379 (391)
Q Consensus 304 l~~~pl~h~~g~~~~-~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~g 379 (391)
+..+|++|.+++... +..+..|+++++... ++..+++.++++++|.+..+|.+++.+.+.. ....+++++|.+++|
T Consensus 254 ~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~g 333 (560)
T PRK08974 254 VTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGG 333 (560)
T ss_pred EEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEec
Confidence 999999999998765 677889998877643 7889999999999999999999999987652 233456688888888
Q ss_pred HHHH
Q psy2417 380 MAMG 383 (391)
Q Consensus 380 ga~~ 383 (391)
|+..
T Consensus 334 g~~~ 337 (560)
T PRK08974 334 GMAV 337 (560)
T ss_pred CccC
Confidence 8754
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-32 Score=270.23 Aligned_cols=268 Identities=19% Similarity=0.219 Sum_probs=214.0
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
.++.+.+...+..+|+.+++...+. .+.+||.||+++++++|.+|.+.|+++|++|+|+++|+++|+++++||+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~ 77 (545)
T PRK07768 2 SRFTEKMYANARTSPRGMVTGEPDA----PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMR 77 (545)
T ss_pred chHHHHHHHHhhCCCcceEEecCCC----ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHc
Confidence 3678888899999999998866542 378999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHH-------HHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEe
Q psy2417 163 SMIIVALYDTLGPDAC-------AFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIR 235 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l-------~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (391)
|++++|+++..+.+++ .++++.++++.++++... ........ ..++.++.
T Consensus 78 g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~---------------------~~~~~~~~ 134 (545)
T PRK07768 78 GASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPF--LAAAPVLE---------------------EKGIRVLT 134 (545)
T ss_pred CccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchh--hhhhhhhc---------------------ccCCceee
Confidence 9999999998887655 456777899999997752 11111111 01223455
Q ss_pred HHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCC-CEEEEcCChHHHHH
Q psy2417 236 FDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYS-DVLISFLPLAHMLE 314 (391)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~-d~~l~~~pl~h~~g 314 (391)
++++...... .+....++++++|+|||||||.||||+++|+++..........++ +..+ |++++.+|++|+++
T Consensus 135 ~~~l~~~~~~---~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~---~~~~~d~~~~~~p~~~~~g 208 (545)
T PRK07768 135 VADLLAADPI---DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAE---FDVETDVMVSWLPLFHDMG 208 (545)
T ss_pred hhhhcccCCC---CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcC---CCCCCceeEEeCCCccchH
Confidence 6665542211 223446799999999999999999999999999998887777766 6766 89999999999999
Q ss_pred HHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-----HhcCchhHHHHHHHHHHH
Q psy2417 315 RTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-----AQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 315 ~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-----~~~~~~slr~~~~gga~~ 383 (391)
+... +.++..|+++++.+. ++..+.+.++++++|++..+|.++..+.+... ...+++++|.+++||+..
T Consensus 209 ~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~ 288 (545)
T PRK07768 209 MVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPI 288 (545)
T ss_pred HHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCC
Confidence 9876 678999999988753 67888999999999999888888877665431 135677899999888765
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=263.62 Aligned_cols=243 Identities=20% Similarity=0.224 Sum_probs=200.8
Q ss_pred HHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEc
Q psy2417 90 RKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVAL 169 (391)
Q Consensus 90 ~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl 169 (391)
+..++.+|+++|+.+.+ +.+||+||.++++++|.+|.+.|+.+|++|+++++|+++++++++||+++|++++|+
T Consensus 10 ~~~a~~~~~~~a~~~~~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~ 83 (458)
T PRK09029 10 RHWAQVRPQAIALRLND------EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPL 83 (458)
T ss_pred HHHHHhCCCceeeecCC------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeec
Confidence 55688999999998765 789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhhccCCC
Q psy2417 170 YDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFE 249 (391)
Q Consensus 170 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 249 (391)
++..+.+++..+++++++++++++.+.. .+. .+... .+. ......
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~-----~~~~~----------------------~~~------~~~~~~ 128 (458)
T PRK09029 84 NPQLPQPLLEELLPSLTLDFALVLEGEN--TFS-----ALTSL----------------------HLQ------LVEGAH 128 (458)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcCccc--chh-----hcccc----------------------ccc------cccccC
Confidence 9999999999999999999999987521 110 00000 000 000011
Q ss_pred CCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEE
Q psy2417 250 EVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIG 329 (391)
Q Consensus 250 ~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv 329 (391)
+....++++++++|||||||.||||+++|++++..+......++ +..+|+++..+|++|.+|+...+.+|..|++++
T Consensus 129 ~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~---~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~ 205 (458)
T PRK09029 129 AVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMP---FTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLV 205 (458)
T ss_pred cccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCC---CCccceEEEecCcHhhhhhHHHHHHHhCCceEE
Confidence 23346789999999999999999999999999999888877777 889999999999999999977688999999999
Q ss_pred EeCCCHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q psy2417 330 YYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 330 ~~~~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~ 383 (391)
+.+. ..+++.+ .++|.+..+|+++..+...... ..++|.+++||+..
T Consensus 206 ~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~---~~~l~~i~~gG~~~ 252 (458)
T PRK09029 206 VRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE---PLSLKAVLLGGAAI 252 (458)
T ss_pred eCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc---CCcceEEEECCCCC
Confidence 8764 5566776 4799999999999988765322 33788888888754
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=266.65 Aligned_cols=243 Identities=17% Similarity=0.141 Sum_probs=200.1
Q ss_pred HHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCC
Q psy2417 93 AKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDT 172 (391)
Q Consensus 93 ~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~ 172 (391)
....++++|+.+.+ +.+||+||.++++++|..|. ++++|+++++|+++|+++++||+++|++++|+++.
T Consensus 10 ~~~~~~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~ 78 (471)
T PRK07787 10 AAAADIADAVRIGG------RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPD 78 (471)
T ss_pred hcccCCceEEEeCC------cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCC
Confidence 44578899998866 79999999999999999996 46999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhhccCCCCCC
Q psy2417 173 LGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVP 252 (391)
Q Consensus 173 ~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 252 (391)
.+.+++.++++++++++++++...... .+..+. +... ... ......
T Consensus 79 ~~~~~l~~~l~~~~~~~il~~~~~~~~--------~~~~~~-~~~~--------------~~~-----------~~~~~~ 124 (471)
T PRK07787 79 SGVAERRHILADSGAQAWLGPAPDDPA--------GLPHVP-VRLH--------------ARS-----------WHRYPE 124 (471)
T ss_pred CChHHHHHHHHhcCCCEEEecCCcccc--------ccccee-eecc--------------ccc-----------cccCCC
Confidence 999999999999999999997642100 111110 0000 000 001112
Q ss_pred CCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-HHHHHhCcEEEEe
Q psy2417 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE-SAMFLVGGSIGYY 331 (391)
Q Consensus 253 ~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~-~~~L~~G~~vv~~ 331 (391)
..++++++|+|||||||.||||+++|+++...+......++ +..+|++++.+|++|.+|+... +.++..|+++++.
T Consensus 125 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~ 201 (471)
T PRK07787 125 PDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQ---WTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHT 201 (471)
T ss_pred CCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcC---CCccceeEeccCCeeechhHHHHHHHHhcCCEEEec
Confidence 45789999999999999999999999999999888877777 8899999999999999999876 8899999999987
Q ss_pred CC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy2417 332 SG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 332 ~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~ 384 (391)
+. ++..+++.++ +++|++.++|.++..+.+......+++++|.++.||+...
T Consensus 202 ~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~~~~l~~l~~~~~gg~~~~ 254 (471)
T PRK07787 202 GRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEAARALRGARLLVSGSAALP 254 (471)
T ss_pred CCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccccccccceeEEEECCCCCC
Confidence 65 8999999999 9999999999999998875333345668888888887654
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=259.19 Aligned_cols=216 Identities=15% Similarity=0.077 Sum_probs=186.9
Q ss_pred eEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEE
Q psy2417 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIV 192 (391)
Q Consensus 113 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~ 192 (391)
+.+||+||.++++++|..|. +|+++|++|+|+++|+++++++++|++++|++++|+++..+.+++..++++++++++++
T Consensus 7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~ 85 (414)
T PRK08308 7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY 85 (414)
T ss_pred ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence 68999999999999999985 78999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCc
Q psy2417 193 DDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPK 272 (391)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PK 272 (391)
+.... . .. ......++++++|+|||||||.||
T Consensus 86 ~~~~~----------~------~~--------------------------------~~~~~~~~~~~~i~~TSGtTG~PK 117 (414)
T PRK08308 86 GESDF----------T------KL--------------------------------EAVNYLAEEPSLLQYSSGTTGEPK 117 (414)
T ss_pred cCccc----------c------cc--------------------------------cCCCCCCCCceEEEECCCCCCCCc
Confidence 76310 0 00 001235788999999999999999
Q ss_pred EEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEE
Q psy2417 273 GVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIM 350 (391)
Q Consensus 273 gV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~ 350 (391)
||+++|+++.+.+......+. +..+|+.+..+|++|.+|+... +.+|..|+++++.+. ++..+++.++++++|++
T Consensus 118 gv~~s~~~l~~~~~~~~~~~~---~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~ 194 (414)
T PRK08308 118 LIRRSWTEIDREIEAYNEALN---CEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHIL 194 (414)
T ss_pred EEEEehHhHHHHHHHHHHhhC---CCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEE
Confidence 999999999998888877777 7889999999999999998765 889999999998765 89999999999999999
Q ss_pred ecChHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q psy2417 351 PAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 351 ~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~ 383 (391)
+++|.++..+.+.... ..+++.+++||+..
T Consensus 195 ~~~P~~~~~l~~~~~~---~~~l~~~~~~G~~l 224 (414)
T PRK08308 195 YAVPLMLHILGRLLPG---TFQFHAVMTSGTPL 224 (414)
T ss_pred EcCHHHHHHHHhcCCc---cccccEEEEccCCC
Confidence 9999999998765321 12566667777643
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.5e-31 Score=260.40 Aligned_cols=273 Identities=15% Similarity=0.141 Sum_probs=209.4
Q ss_pred HHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEc
Q psy2417 90 RKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVAL 169 (391)
Q Consensus 90 ~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl 169 (391)
...++++|+++|+.+... .+.+||.||.++++++|++|.++|+++|++|+++++|+++++++++||+++|++++|+
T Consensus 4 ~~~a~~~p~~~a~~~~~~----~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l 79 (511)
T PRK13391 4 GIHAQTTPDKPAVIMAST----GEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCV 79 (511)
T ss_pred hhhHhhCCCceEEEecCC----CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecc
Confidence 456788999999987421 1679999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhhccC
Q psy2417 170 YDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKM 247 (391)
Q Consensus 170 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (391)
++.++.+++.++++++++++++++... ...+.+.... .....+.++.... ......+++.... ..
T Consensus 80 ~~~~~~~~l~~~l~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~---~~ 146 (511)
T PRK13391 80 NSHLTPAEAAYIVDDSGARALITSAAK-LDVARALLKQCPGVRHRLVLDGDGE---------LEGFVGYAEAVAG---LP 146 (511)
T ss_pred ccccCHHHHHHHHhccCCcEEEEchhh-HHHHHHHHhcCCCceEEEEecCCCC---------CcccccHHHHhcC---CC
Confidence 999999999999999999999998763 2222211111 2334444432110 0112233332211 11
Q ss_pred CCCCCCCCCCceEEEecCCCCCCCcEEEe--ehhHHHHH---HHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHH
Q psy2417 248 FEEVPPKPTDLCTICYTSGTTGNPKGVML--THGNVIAA---ISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMF 322 (391)
Q Consensus 248 ~~~~~~~~~~~a~i~~TSGSTG~PKgV~~--th~~l~~~---~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L 322 (391)
.......++.++|+|||||||.||||++ +|.++... .......+. +..+++++..+|++|.+++...+.++
T Consensus 147 -~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~p~~h~~~~~~~~~~~ 222 (511)
T PRK13391 147 -ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWG---FRSDMVYLSPAPLYHSAPQRAVMLVI 222 (511)
T ss_pred -CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcC---CCCCCeEEEcCCHHHHHHHHHHHHHH
Confidence 1112234567999999999999999995 56665433 233344455 78899999999999999998888899
Q ss_pred HhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH---HHhcCchhHHHHHHHHHHH
Q psy2417 323 LVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV---MAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 323 ~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~---~~~~~~~slr~~~~gga~~ 383 (391)
..|+++++.+. ++..+++.++++++|++.++|+++..+.+.. ....+++++|.+++||+..
T Consensus 223 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~ 287 (511)
T PRK13391 223 RLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPC 287 (511)
T ss_pred HcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCC
Confidence 99999999866 9999999999999999999999998887542 2334577899999888754
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-31 Score=257.32 Aligned_cols=222 Identities=13% Similarity=0.057 Sum_probs=180.8
Q ss_pred EEeHHHHHHHHHHHHHHHHhCCC-CCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEE
Q psy2417 114 WIHYNQALLRARNFGSGLLGLGV-NPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIV 192 (391)
Q Consensus 114 ~~Ty~el~~~~~~la~~L~~~gv-~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~ 192 (391)
-+.|+||.++++++|++|.+.|+ .+|++|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 38899999999999999999998 56999999999999999999999999999999999999999999999999999998
Q ss_pred cCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCc
Q psy2417 193 DDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPK 272 (391)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PK 272 (391)
+.... . . . ... .. . ......++++++++|||||||.||
T Consensus 99 ~~~~~-~-~-------~-----~~~--------------------------~~-~-~~~~~~~~~~~~i~~TSGTTG~PK 136 (452)
T PRK07445 99 LDQLK-L-S-------H-----PPP--------------------------LP-S-QGILPNLETGWIMIPTGGSSGQIR 136 (452)
T ss_pred cCccc-c-c-------c-----CCC--------------------------CC-c-cccCCCCCCcEEEEeCCCCCCCCc
Confidence 76420 0 0 0 000 00 0 001235689999999999999999
Q ss_pred EEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEe
Q psy2417 273 GVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMP 351 (391)
Q Consensus 273 gV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~ 351 (391)
||++||+++++.+......+. +.+ +++++.+|++|.+|+...+.+|+.|+++++.+. +.........++++|++.
T Consensus 137 gV~~t~~~l~~~~~~~~~~~~---~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~ 212 (452)
T PRK07445 137 FAIHTWETLTASVQGFQRYFQ---LQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLS 212 (452)
T ss_pred EEEechHHHHHHHHHHHHHhc---CCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEE
Confidence 999999999988887777665 544 467889999999999877899999999998764 223223444578999999
Q ss_pred cChHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q psy2417 352 AVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 352 ~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~ 383 (391)
++|++++.+.+. ...++++||.+++||+..
T Consensus 213 ~vP~~l~~l~~~--~~~~l~~l~~i~~gG~~l 242 (452)
T PRK07445 213 LVPTQLQRLLQL--RPQWLAQFRTILLGGAPA 242 (452)
T ss_pred ehHHHHHHHHhh--ChhhhhcceEEEECCccC
Confidence 999999998763 223467899999998775
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=266.88 Aligned_cols=316 Identities=19% Similarity=0.180 Sum_probs=241.5
Q ss_pred hhhhhccccchhhhhhhhccccccccc----------------CCCCccCccCcccccCCC--CCcceeccCCCCCHHHH
Q psy2417 27 QNLALVGTNETMRLRFYYQSDRSSNLR----------------GRGREVVRVSKFFSGASE--GKFLSTLYDDVKTLYDA 88 (391)
Q Consensus 27 l~~~~~~~~~~l~~~~~y~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~tl~~~ 88 (391)
+.+.+... ++.+.|+|..++|++.+ ..+.......++...... .+-.....+...++++.
T Consensus 155 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ll~~~e~~~~~~~~~~~~~~~~i~~~ 232 (642)
T COG1020 155 LALAVVEG--GLRLSFDYARELFDAETIERELRHFLQLLAALADAPRTSLSALPLLLPSEREVWNALAAPIPLRLTIHLL 232 (642)
T ss_pred eEEEEEeC--ceEEEEEeecccCCHHHHHHHHHHHHHHHHHHHhCcccCcccCCCCCHHHHhhccccccCCCccchHHHH
Confidence 55555555 89999999999999876 111111111111100000 01122233445789999
Q ss_pred HHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEE
Q psy2417 89 FRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVA 168 (391)
Q Consensus 89 l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vp 168 (391)
|..++...|++.|+.+.+ ..+||+|++.+++++|+.|.+.|+++++.|+++.+++++++++++|++++|+.+||
T Consensus 233 f~~~a~~~p~~~a~~~~~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP 306 (642)
T COG1020 233 FEEQAATTPDAVALVRGG------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVP 306 (642)
T ss_pred HHHHHHhCCCceeEecCC------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEec
Confidence 999999999999998875 68999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhhccCC
Q psy2417 169 LYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMF 248 (391)
Q Consensus 169 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (391)
+||.+|.+++.+++++++++.+++.... .......+ . +.++.. .........
T Consensus 307 ~d~~~P~~r~~~~l~~~~~~~~~~~~~~--~~~~~~~~----~-~~~~~~---------------------~~~~~~~~~ 358 (642)
T COG1020 307 LDPLYPAERLAYILEDSRPTLLLTQAHL--RVDDVGLP----G-LALDDA---------------------LSEIPDTDP 358 (642)
T ss_pred CCCCChHHHHHHHHhhcCccEEEecccc--ccccccCC----c-cccccc---------------------cccCCccCc
Confidence 9999999999999999999999998431 00000000 0 111110 000000000
Q ss_pred CCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEE
Q psy2417 249 EEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSI 328 (391)
Q Consensus 249 ~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~v 328 (391)
......+++++|++|||||||.||||+++|+++.+.+.+....+. ++.+|+++...+++|+.+....+.++..|+++
T Consensus 359 ~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~---~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l 435 (642)
T COG1020 359 IPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFG---LDADDRVLALASLSFDASVFEIFGALLEGARL 435 (642)
T ss_pred ccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcC---CCcccEEeecCCcccchhHHHHHHHHhCCCEE
Confidence 012235689999999999999999999999999998888888877 89999999999999999999999999999999
Q ss_pred EEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhc---CchhHHHHHHHHH
Q psy2417 329 GYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQI---RPSFIKRLMFNMA 381 (391)
Q Consensus 329 v~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~---~~~slr~~~~gga 381 (391)
++.+. ++..+.+.+.++++|++..+|.++..+........ ....+|.+++||.
T Consensus 436 ~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe 495 (642)
T COG1020 436 VLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGE 495 (642)
T ss_pred EecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCC
Confidence 99864 89999999999999999999999999987622221 1224888888883
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=258.20 Aligned_cols=263 Identities=20% Similarity=0.209 Sum_probs=200.3
Q ss_pred eEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEE
Q psy2417 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIV 192 (391)
Q Consensus 113 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~ 192 (391)
+.+||.||.++++++|++|.++|+++|++|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++++
T Consensus 10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~ 89 (509)
T PRK12406 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA 89 (509)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhHHHhhcccCccEEEEecCcchHHH-----HHHhhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCC
Q psy2417 193 DDDSKCNQIIDRAPRCLKKIISIREVRMATM-----QRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGT 267 (391)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGS 267 (391)
+... ...+.+..+..+ .++..+....... ............|+++..... ......++++++|+|||||
T Consensus 90 ~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGt 163 (509)
T PRK12406 90 HADL-LHGLASALPAGV-TVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTSGT 163 (509)
T ss_pred ccch-hhhhhhhhhccc-ceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECCCC
Confidence 8753 333333222111 2222221110000 000001112344555432211 1123457899999999999
Q ss_pred CCCCcEEEeehhHHHH---HHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC-CHHhHHHHHH
Q psy2417 268 TGNPKGVMLTHGNVIA---AISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG-DIKNLTEDMK 343 (391)
Q Consensus 268 TG~PKgV~~th~~l~~---~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~-~~~~l~~~i~ 343 (391)
||.||||+++|.+... ........++ +.+++++++.+|++|..+....+.++..|+++++.+. ++..+++.++
T Consensus 164 TG~PK~v~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~ 240 (509)
T PRK12406 164 TGHPKGVRRAAPTPEQAAAAEQMRALIYG---LKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQLIE 240 (509)
T ss_pred CCCCceEEEechhHHHHHHHHHhhhhhcC---CCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHHHHH
Confidence 9999999997765443 3333444555 8889999999999999998888888999999998765 8999999999
Q ss_pred hcCCcEEecChHHHHHHHHHH---HHhcCchhHHHHHHHHHHHH
Q psy2417 344 TLKPTIMPAVPRLLNRMYDKV---MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 344 ~~~~t~~~~~P~~l~~l~~~~---~~~~~~~slr~~~~gga~~~ 384 (391)
++++|++..+|+++..+++.. ....+++++|.+++||+...
T Consensus 241 ~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~ 284 (509)
T PRK12406 241 RHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCP 284 (509)
T ss_pred HcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCC
Confidence 999999999999999988642 23456779999999987653
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=253.12 Aligned_cols=231 Identities=20% Similarity=0.232 Sum_probs=189.7
Q ss_pred eHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCC
Q psy2417 116 HYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDD 195 (391)
Q Consensus 116 Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 195 (391)
||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++||+++|++++|+++.++.+++..+++++++++++++..
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEE
Q psy2417 196 SKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVM 275 (391)
Q Consensus 196 ~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~ 275 (391)
.. .. . +. ...+.++................+++++++|||||||.||||+
T Consensus 81 ~~-~~-------~----~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~ 130 (436)
T TIGR01923 81 LE-EK-------D----FQ------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVP 130 (436)
T ss_pred cc-cc-------c----ee------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcEEE
Confidence 21 00 0 00 0111111111111111122345688999999999999999999
Q ss_pred eehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCCCHHhHHHHHHhcCCcEEecChH
Q psy2417 276 LTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPR 355 (391)
Q Consensus 276 ~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~~~~~l~~~i~~~~~t~~~~~P~ 355 (391)
++|+++...+......++ +.++|++++.+|++|.+++...+.++..|+++++.+.. ..+++.+.++++|++..+|+
T Consensus 131 ~s~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~~~P~ 206 (436)
T TIGR01923 131 HTFRNHYASAVGSKENLG---FTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHISLVPT 206 (436)
T ss_pred EehHHHHHHHHHHHhhcC---CCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEEeHHH
Confidence 999999999888888887 89999999999999999998779999999999997653 48999999999999999999
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHH
Q psy2417 356 LLNRMYDKVMAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 356 ~l~~l~~~~~~~~~~~slr~~~~gga~~ 383 (391)
++..+.+.... .+++|.+++||+..
T Consensus 207 ~l~~l~~~~~~---~~~l~~~~~~G~~~ 231 (436)
T TIGR01923 207 QLNRLLDEGGH---NENLRKILLGGSAI 231 (436)
T ss_pred HHHHHHhCcCC---CCceEEEEECCCCC
Confidence 99999875321 14677777777644
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=247.06 Aligned_cols=244 Identities=19% Similarity=0.245 Sum_probs=198.1
Q ss_pred eHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcC
Q psy2417 116 HYNQALLRARNFGSGLLG-LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDD 194 (391)
Q Consensus 116 Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~ 194 (391)
||.||.+++++++++|.+ .|+++|++|+++++|+++++++++||++.|++++|+++.++.+++.++++++++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEE
Q psy2417 195 DSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGV 274 (391)
Q Consensus 195 ~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV 274 (391)
.. ...+.. . ...++.++... ...................+++++|+|||||||.||+|
T Consensus 81 ~~-~~~~~~-~---~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v 138 (408)
T TIGR01733 81 AL-ASRLAG-L---VLPIILVDPLE-----------------LAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKGV 138 (408)
T ss_pred ch-hhhccc-c---CCceEEechhh-----------------hhhcccccccccccCCCCCCCcEEEEEcCCCCCCCCEE
Confidence 62 111111 1 11122221100 00000000000011113578999999999999999999
Q ss_pred EeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC----CHHhHHHHHHhcCCcEE
Q psy2417 275 MLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG----DIKNLTEDMKTLKPTIM 350 (391)
Q Consensus 275 ~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~----~~~~l~~~i~~~~~t~~ 350 (391)
.++|+++++........+. +.++|++++..|++|.+++...+.++..|+++++.+. .+..+.+.++++++|.+
T Consensus 139 ~~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l 215 (408)
T TIGR01733 139 VVTHRSLVNLLAWLARRYG---LDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVL 215 (408)
T ss_pred EeccHHHHHHHHHHHHhcC---CCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEE
Confidence 9999999999988888777 8899999999999999999888999999999999865 26788999999999999
Q ss_pred ecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q psy2417 351 PAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSKE 386 (391)
Q Consensus 351 ~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~k~ 386 (391)
.++|.+++.+.+... ..+++||.+++||+...+.
T Consensus 216 ~~~p~~~~~l~~~~~--~~~~~l~~v~~~g~~~~~~ 249 (408)
T TIGR01733 216 NLTPSLLALLAAALP--PALASLRLVILGGEALTPA 249 (408)
T ss_pred EeCHHHHHHHHHhhh--hcccCceEEEEeCccCCHH
Confidence 999999999988744 5567999999998877554
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=253.48 Aligned_cols=257 Identities=19% Similarity=0.230 Sum_probs=198.1
Q ss_pred eEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEE
Q psy2417 113 QWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIV 192 (391)
Q Consensus 113 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~ 192 (391)
+.+||+||.+++++++++|.+.|+++|++|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++++
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~ 89 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV 89 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhHHHhh---cccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCC
Q psy2417 193 DDDSKCNQIIDR---APRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTG 269 (391)
Q Consensus 193 ~~~~~~~~~~~~---~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG 269 (391)
+... ...+.+. ....++.++..+... .....|++...... .......+++++|+|||||||
T Consensus 90 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG 153 (502)
T PRK08276 90 SAAL-ADTAAELAAELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP----DTPIADETAGADMLYSSGTTG 153 (502)
T ss_pred ccch-hhHHHHHhhhccccccEEEEeCCCC-----------CccccHHHHHhcCC----CCCCCCCCcceEEEECCCCCC
Confidence 8753 2222111 111234444432210 11234444432211 112235677999999999999
Q ss_pred CCcEEEeehhHHHHHHH--HHHHhhc-CCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC-CHHhHHHHHHhc
Q psy2417 270 NPKGVMLTHGNVIAAIS--AALLQLS-DHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG-DIKNLTEDMKTL 345 (391)
Q Consensus 270 ~PKgV~~th~~l~~~~~--~~~~~~~-~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~-~~~~l~~~i~~~ 345 (391)
.||||+++|.++..... ....... ......++++++.+|++|.+++...+.++..|+++++.+. ++..+++.++++
T Consensus 154 ~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 233 (502)
T PRK08276 154 RPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERY 233 (502)
T ss_pred CCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHh
Confidence 99999999887654321 1111111 0013468899999999999999888889999999998865 899999999999
Q ss_pred CCcEEecChHHHHHHHHHHH---HhcCchhHHHHHHHHHHHHH
Q psy2417 346 KPTIMPAVPRLLNRMYDKVM---AQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 346 ~~t~~~~~P~~l~~l~~~~~---~~~~~~slr~~~~gga~~~k 385 (391)
++|++.++|+++..+.+... ...+++++|.+++||+...+
T Consensus 234 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~ 276 (502)
T PRK08276 234 RVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPV 276 (502)
T ss_pred CCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCH
Confidence 99999999999999887532 34567899999999986543
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=215.38 Aligned_cols=223 Identities=14% Similarity=0.086 Sum_probs=162.6
Q ss_pred HHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEE
Q psy2417 89 FRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLG-LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIV 167 (391)
Q Consensus 89 l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~v 167 (391)
+..+++.+|+++|+++.+..+++.+.+||+|+.++++++|++|++ +|+++||+|+|+++|+++++++++|++++|++++
T Consensus 2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v 81 (227)
T TIGR03089 2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV 81 (227)
T ss_pred hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 567888999999998653211123679999999999999999998 7999999999999999999999999999999999
Q ss_pred EccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhhccC
Q psy2417 168 ALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKM 247 (391)
Q Consensus 168 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (391)
|++ ++++++++++.+. ...+ . ..+.++.+......... .......+..|.+.........
T Consensus 82 p~n-------------~s~a~~~v~~~~~-~~~~-~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 141 (227)
T TIGR03089 82 LAG-------------DPDADVVVTGPDR-LAAA-A----GSGEVVALSLDPLGRRV-AGELPPGVIDFAPEVRVHGDQF 141 (227)
T ss_pred eCC-------------CCCCCEEEeCcch-hhhc-c----cCCceEEEeccccccCC-CCCCCCcccchhhhhhccCCCC
Confidence 995 6899999998762 2221 1 11233333110000000 0000112245555444222211
Q ss_pred CCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-HHHHHhCc
Q psy2417 248 FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE-SAMFLVGG 326 (391)
Q Consensus 248 ~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~-~~~L~~G~ 326 (391)
.++....++|++.|+||||+ +|++++... ...+ +.++|+++ .+|++|++|+... +.+|+.|+
T Consensus 142 ~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~---l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~ 204 (227)
T TIGR03089 142 APYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAG---LPPGDRVL-VLAWTDLEDFLATLLAPLAAGG 204 (227)
T ss_pred CCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcC---CCCCCeEE-ecCCCchHHHHHHHHHHhccCc
Confidence 11113467999999999985 677766554 3444 88999999 9999999999765 89999999
Q ss_pred EEEEeCC-CHHhHHHHHHhcCCc
Q psy2417 327 SIGYYSG-DIKNLTEDMKTLKPT 348 (391)
Q Consensus 327 ~vv~~~~-~~~~l~~~i~~~~~t 348 (391)
++++.+. ++..+++.|+++|||
T Consensus 205 t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 205 SLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred eEEEecCCCHHHHHHHHHhhcCC
Confidence 9999876 999999999999997
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-29 Score=246.11 Aligned_cols=231 Identities=15% Similarity=0.135 Sum_probs=169.5
Q ss_pred ccCCHHHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCc-----chhHHHhhccc-CccEEEEecCcc
Q psy2417 146 SQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDS-----KCNQIIDRAPR-CLKKIISIREVR 219 (391)
Q Consensus 146 ~~~s~e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~-----~~~~~~~~~~~-~l~~ii~~~~~~ 219 (391)
++|++|+++++|||+++|+++||+++.++.+++.+++++++++++|++... ....+.+.... ..+.++......
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE 80 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence 589999999999999999999999999999999999999999999998641 01111111110 122232221110
Q ss_pred hHHHHHHhhCCceEEeHHHHHHhhhcc------CCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhc
Q psy2417 220 MATMQRARSRAIEIIRFDEIERVGAQK------MFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLS 293 (391)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~ 293 (391)
.... ........|+++...+... ...+....++++++|+|||||||.||||++||+|++.........++
T Consensus 81 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~ 156 (499)
T PLN03051 81 PVAV----PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMD 156 (499)
T ss_pred ccCC----ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcC
Confidence 0000 0000123566654322110 00111235689999999999999999999999999877655555555
Q ss_pred CCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHH---HHhc
Q psy2417 294 DHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV---MAQI 368 (391)
Q Consensus 294 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~---~~~~ 368 (391)
+..+|++++.+|++|++++...+.+|+.|+++++.+. ++..+++.|++++||++.++|+++..|.+.. ....
T Consensus 157 ---~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~ 233 (499)
T PLN03051 157 ---IQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGL 233 (499)
T ss_pred ---CCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccC
Confidence 7889999999999999998766889999999998863 7889999999999999999999999988753 2345
Q ss_pred CchhHHHHHHHHHHH
Q psy2417 369 RPSFIKRLMFNMAMG 383 (391)
Q Consensus 369 ~~~slr~~~~gga~~ 383 (391)
++++||.+++||+..
T Consensus 234 ~~~~Lr~i~~gG~~~ 248 (499)
T PLN03051 234 DWSKLRVFASTGEAS 248 (499)
T ss_pred CchhheEEEecCCCC
Confidence 778999999998764
|
|
| >KOG1175|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=238.29 Aligned_cols=296 Identities=17% Similarity=0.172 Sum_probs=224.9
Q ss_pred eeccCCCCCHH-HHHHHHHHh-cCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHH
Q psy2417 76 STLYDDVKTLY-DAFRKGAKE-SNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWI 153 (391)
Q Consensus 76 ~~~~~~~~tl~-~~l~~~~~~-~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i 153 (391)
.++.....+.. ..+.+.... .++.++.++.+...++...+||.|+.+++.++|..|.+.|+++||+|++++|+.+|++
T Consensus 56 ~w~~g~~ln~~~n~~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ 135 (626)
T KOG1175|consen 56 KWFPGAFLNACYNCLDRHIKEKGGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAV 135 (626)
T ss_pred cccccchhhhhHhhhhhhhhhcCCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHH
Confidence 33333333443 334444333 4899999998754444455999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc--------hhHHHhh---ccc----CccEEEEecCc
Q psy2417 154 ITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK--------CNQIIDR---APR----CLKKIISIREV 218 (391)
Q Consensus 154 ~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--------~~~~~~~---~~~----~l~~ii~~~~~ 218 (391)
+++|||.++|++..++-..++++++...++++++++|++.+.-. ...+.+. ... ..+.+++.+..
T Consensus 136 ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 215 (626)
T KOG1175|consen 136 IAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRN 215 (626)
T ss_pred HHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEeccc
Confidence 99999999999999999999999999999999999999976510 0011111 110 01111111110
Q ss_pred chHHHHHHhhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHH-HHHhhcCCCC
Q psy2417 219 RMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA-ALLQLSDHRP 297 (391)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~ 297 (391)
....|++......... +..+...+|+.+|+|||||||.||||.+++....-.... ....+. +
T Consensus 216 -------------~d~~~~~~~~~a~~~~-~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d---~ 278 (626)
T KOG1175|consen 216 -------------RDLFWSLELKKASPEH-PCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFD---L 278 (626)
T ss_pred -------------ccccHHHHhhhcCCCC-CceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceecc---C
Confidence 1334555544333332 356678899999999999999999999998876655443 333444 8
Q ss_pred CCCCEEEEcCChHHHHHHHHH-HHHHHhCcEEEEeCC---CHHhHHHHHHhcCCcEEecChHHHHHHHHHH---HHhcCc
Q psy2417 298 KYSDVLISFLPLAHMLERTCE-SAMFLVGGSIGYYSG---DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV---MAQIRP 370 (391)
Q Consensus 298 ~~~d~~l~~~pl~h~~g~~~~-~~~L~~G~~vv~~~~---~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~---~~~~~~ 370 (391)
.++|++.+...+.++.+.+.. +++|++|+++++.+. ++..+++.++++++|+++..|.+++.|.+.. ....+.
T Consensus 279 q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~ 358 (626)
T KOG1175|consen 279 QPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSL 358 (626)
T ss_pred CCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcccccccccc
Confidence 999999999999999999998 789999999999864 8899999999999999999999999887652 234444
Q ss_pred hhHHHHHHHHHHHHHHHh
Q psy2417 371 SFIKRLMFNMAMGSKENE 388 (391)
Q Consensus 371 ~slr~~~~gga~~~k~~~ 388 (391)
++||.+.+.|.+.++..+
T Consensus 359 ~sLk~~~S~Gepi~~~~~ 376 (626)
T KOG1175|consen 359 KSLRTCGSVGEPINPEAW 376 (626)
T ss_pred ceEEEEeecCccCCcchH
Confidence 679999999988766554
|
|
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=173.06 Aligned_cols=262 Identities=11% Similarity=0.056 Sum_probs=209.7
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCC-CCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLG-VNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g-v~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
.++.|+|+.+++.+||.+|+...+..+.+..++||+++..++.+++.+|...+ +++||.|++++++++|++++++||+.
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly 849 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY 849 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence 68999999999999999999998876677899999999999999999999875 88999999999999999999999999
Q ss_pred cCCeEEEccCCCCHH------HHHHHHHhcCccEEEEcCCcchhHHHhhccc-------CccEEEEecCcchHHHHHHhh
Q psy2417 162 YSMIIVALYDTLGPD------ACAFIINQAEISVLIVDDDSKCNQIIDRAPR-------CLKKIISIREVRMATMQRARS 228 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~------~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-------~l~~ii~~~~~~~~~~~~~~~ 228 (391)
+|.+++|+.|..... .+..|++.+++..|++++. +..++..... .+..++..++....
T Consensus 850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~--v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t------- 920 (1363)
T KOG3628|consen 850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQK--VLKLLRSREASAHVDQSAIPLILVLPKLPET------- 920 (1363)
T ss_pred cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHH--HHHHHhhhhHHHHhhhhcchhhhcccccchh-------
Confidence 999999999866543 6788999999999999986 3333332221 22333333332211
Q ss_pred CCceEEeHHHHHHhh--hccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEc
Q psy2417 229 RAIEIIRFDEIERVG--AQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISF 306 (391)
Q Consensus 229 ~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~ 306 (391)
|..-.... .....++....++.+||+.|.--++|.--||.++|.++++.++..-+... +.+..-++..
T Consensus 921 -------~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~---l~~~rpl~~~ 990 (1363)
T KOG3628|consen 921 -------IRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQ---LYKSRPLLGC 990 (1363)
T ss_pred -------hhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHc---cccCCceEEE
Confidence 00000000 01111223346788999999999999999999999999999999988887 8888888888
Q ss_pred CChHHHHHHHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHH
Q psy2417 307 LPLAHMLERTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK 363 (391)
Q Consensus 307 ~pl~h~~g~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~ 363 (391)
.+.+...|+..+ +...+.|...++.+. +|..|++.|+++++.-.+.+=..++...+.
T Consensus 991 ~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~ 1053 (1363)
T KOG3628|consen 991 SSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKG 1053 (1363)
T ss_pred ecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhc
Confidence 888888888877 889999999888754 899999999999999988888888877665
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.9e-16 Score=148.21 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=96.8
Q ss_pred CCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCC--CCCEEEEcCChHHHHHHHHH-HHHHHhCcEEEEeC
Q psy2417 256 TDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPK--YSDVLISFLPLAHMLERTCE-SAMFLVGGSIGYYS 332 (391)
Q Consensus 256 ~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~--~~d~~l~~~pl~h~~g~~~~-~~~L~~G~~vv~~~ 332 (391)
+..++|+|||||||.||||+++|+++.+........++ +. +.|++++.+|++|.+|+... +.++..|+++++.+
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~ 171 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILG---ERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLA 171 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhC---cCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecC
Confidence 55889999999999999999999999998887777665 43 34689999999999998655 78899999999876
Q ss_pred C-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy2417 333 G-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 333 ~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~ 384 (391)
. ++..+++.+..+ |+++++|++++.+.+. ..+++++|. ++||+...
T Consensus 172 ~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~---~~~l~slr~-i~gGa~l~ 218 (386)
T TIGR02372 172 AAPASGIMRHARPG--DLIVGTPFIWEQLADL---DYRLPGVVG-VSSGAPST 218 (386)
T ss_pred CCChHHHHHhhccC--CEEEECcHHHHHHHhh---CcCCCccee-EecCCCCC
Confidence 5 777888777643 8999999999999764 244567765 56666543
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-15 Score=145.55 Aligned_cols=128 Identities=22% Similarity=0.214 Sum_probs=104.3
Q ss_pred CCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeC
Q psy2417 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYS 332 (391)
Q Consensus 253 ~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~ 332 (391)
+.++++++|+|||||||.||||+++|+++.+.+...... +...++++..+|++|++++...+.+++.|+++++..
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~-----~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~ 106 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR-----LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELD 106 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc-----cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecC
Confidence 457899999999999999999999999999887765543 345678999999999999988889999999988732
Q ss_pred ----CCHHhHHHHHHhcC--CcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q psy2417 333 ----GDIKNLTEDMKTLK--PTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 333 ----~~~~~l~~~i~~~~--~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~k 385 (391)
.++..+++.+++++ .++...+|..+..+........+++++|.+++||+....
T Consensus 107 ~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~l~~i~~gG~~l~~ 165 (358)
T PRK07824 107 VSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAATAALAELDAVLVGGGPAPA 165 (358)
T ss_pred cCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccccCCcccceEEEECCCCCCH
Confidence 28899999999998 566778898888776543333456789989988876543
|
|
| >KOG1178|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-14 Score=149.24 Aligned_cols=257 Identities=17% Similarity=0.143 Sum_probs=175.3
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeec--CCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQN--ISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQG 158 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~--~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA 158 (391)
-..++.+.+++.+...|...+..+... ..+....+||++....++.+++.|...|...|+.|++++..+.++++..++
T Consensus 34 ~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~ 113 (1032)
T KOG1178|consen 34 FMGTLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFA 113 (1032)
T ss_pred hhcchhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeee
Confidence 356888899999999999998877653 234467899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEccCCCC----HHH---HHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCc
Q psy2417 159 AYCYSMIIVALYDTLG----PDA---CAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAI 231 (391)
Q Consensus 159 ~~~~G~~~vpl~~~~~----~~~---l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (391)
++++|..+++++|.++ +++ +++.+.....+++.-.. .......... . ...+
T Consensus 114 ~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~--i~~~~~~~~~----~----------------~~sv 171 (1032)
T KOG1178|consen 114 VLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLN--IIDILLNSLF----P----------------KLSV 171 (1032)
T ss_pred hhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhhh--hHHHHhhccc----c----------------ccch
Confidence 9999999999999999 221 11111111111111000 0000000000 0 0000
Q ss_pred eEEeHHHHHHhhhccCC-CCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChH
Q psy2417 232 EIIRFDEIERVGAQKMF-EEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLA 310 (391)
Q Consensus 232 ~~~~~~~l~~~~~~~~~-~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 310 (391)
... -+.+......... ......++..+++.||||+||.||||.-+|..+.+...+....+. ...+++.-....++
T Consensus 172 ~~~-~~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~---~t~s~~~~~~~~~~ 247 (1032)
T KOG1178|consen 172 ETI-ADSFQMVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFP---PTGSDRFTFKTSVY 247 (1032)
T ss_pred hhc-cchhhhhhccCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCC---cCccchhhhhheee
Confidence 000 0011111111111 112335777999999999999999999999999999999888876 77777764444443
Q ss_pred HHHHHHHHH-HHHHhCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHH
Q psy2417 311 HMLERTCES-AMFLVGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK 363 (391)
Q Consensus 311 h~~g~~~~~-~~L~~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~ 363 (391)
++-...... ..|..|+.+..+.. .+..+.+.+.+++++..+.+|++.+.++..
T Consensus 248 ~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~ 305 (1032)
T KOG1178|consen 248 FDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAI 305 (1032)
T ss_pred cccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhh
Confidence 444444444 44555555554432 478999999999999999999998887654
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.5e-13 Score=130.24 Aligned_cols=129 Identities=16% Similarity=0.179 Sum_probs=98.5
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHH---HhhcCCCCCCCCEEEEcCChHHHHHHH-HHHHHHHhCcEEE
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAAL---LQLSDHRPKYSDVLISFLPLAHMLERT-CESAMFLVGGSIG 329 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~~~~d~~l~~~pl~h~~g~~-~~~~~L~~G~~vv 329 (391)
..+++++++|||||||.||+|.++|.++........ ..++ +.++|++++..+..+..+.. ..+..+..|++++
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 149 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAG---GRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVV 149 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcC---CCCCcEEEEccCccccchhHHHHHHHHHcCcEEE
Confidence 456789999999999999999999999876644332 2345 78899998877665433333 3356788899988
Q ss_pred EeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHH-hcC--chhHHHHHHHHHHHHH
Q psy2417 330 YYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMA-QIR--PSFIKRLMFNMAMGSK 385 (391)
Q Consensus 330 ~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~-~~~--~~slr~~~~gga~~~k 385 (391)
..+. ++..+++.|++++||+++++|+++..|++.... ..+ ..++|.+++||+....
T Consensus 150 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~ 209 (422)
T TIGR02155 150 PISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTN 209 (422)
T ss_pred ecCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCH
Confidence 7654 789999999999999999999999999876432 222 2478888888876543
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-11 Score=119.80 Aligned_cols=127 Identities=24% Similarity=0.145 Sum_probs=98.3
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhh---cCCCCCCCCEEEEcCChHHHHHHHHH-HHHHHhCcEEE
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQL---SDHRPKYSDVLISFLPLAHMLERTCE-SAMFLVGGSIG 329 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~h~~g~~~~-~~~L~~G~~vv 329 (391)
..++++.|.|||||||.||+|.+||.++..........+ + +.++|+++...|+.+..+.... +.++..|++++
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G---~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi 160 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQG---FTAGDRMVICASYGMNVGANTMTLAAREVGMSII 160 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcC---CCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEE
Confidence 456789999999999999999999999987765544433 5 8899999999998887766555 56778888875
Q ss_pred EeCCCHHhHHHHHHhcCCcEEecChHHHHHHHHHHHH-hcC--chhHHHHHHHHHHHH
Q psy2417 330 YYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMA-QIR--PSFIKRLMFNMAMGS 384 (391)
Q Consensus 330 ~~~~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~-~~~--~~slr~~~~gga~~~ 384 (391)
.. +.....++.|+++++|.+..+|+.+..+++.... ..+ ..++|.+++||....
T Consensus 161 ~~-~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~ 217 (445)
T TIGR03335 161 PE-GKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFA 217 (445)
T ss_pred cC-CchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCC
Confidence 43 3345668899999999999999998888776432 222 358999999887543
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.8e-11 Score=117.99 Aligned_cols=259 Identities=15% Similarity=0.155 Sum_probs=185.8
Q ss_pred cCCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHH-HHHhCCCCCCCeEEEEccCC--HHHHHH
Q psy2417 79 YDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGS-GLLGLGVNPGSFVGIYSQNC--PEWIIT 155 (391)
Q Consensus 79 ~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~-~L~~~gv~~g~~V~i~~~~s--~e~i~~ 155 (391)
......+..+++.+-.+++...|.++.+..+. ...+||..+..++.++|+ .|-+-|..++++|.++...+ +|+++.
T Consensus 90 ~~a~~d~~avl~~~~nhs~~~ta~i~id~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~is 168 (1363)
T KOG3628|consen 90 MMALTDIIAVLRYRRNHSATSTAHICIDKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLIS 168 (1363)
T ss_pred hhhhcchHHHHHhhccCCCCCceEEEEcCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhh
Confidence 34455677888888889999999999887555 789999999999999999 67778999999999999865 899999
Q ss_pred HHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCce-EE
Q psy2417 156 EQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIE-II 234 (391)
Q Consensus 156 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~-~~ 234 (391)
.++|...|.+.+|+.+..+.+++..+++....+++++..+..........+ ....+...+.....++ ..
T Consensus 169 l~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~----------~s~~k~v~~w~t~~~k~~~ 238 (1363)
T KOG3628|consen 169 LFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSP----------VSLAKAVAWWKTNDFKGNY 238 (1363)
T ss_pred hccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCc----------ccHHHHHHhhhccccccee
Confidence 999999999999999999999999999999999999877531111111000 0001111111111111 11
Q ss_pred eHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCC-----------------CC
Q psy2417 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDH-----------------RP 297 (391)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~-----------------~~ 297 (391)
..+. ...+...-. ..||-||++++|.--||+++|. +..+.+.+....... ..
T Consensus 239 ~~~k---------~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~ 307 (1363)
T KOG3628|consen 239 TKDK---------IKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPV 307 (1363)
T ss_pred ehhh---------ccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhcccc
Confidence 1110 001111222 8999999999999999999999 555544332221100 13
Q ss_pred CCCCEEEEcCChHHHHHHHHH-HHHHHhCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHH
Q psy2417 298 KYSDVLISFLPLAHMLERTCE-SAMFLVGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNR 359 (391)
Q Consensus 298 ~~~d~~l~~~pl~h~~g~~~~-~~~L~~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~ 359 (391)
..+++++..+..+-..|++.+ +.+|++|.|...++. .|..+...+.++|.+++..=-..+.+
T Consensus 308 ~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq 374 (1363)
T KOG3628|consen 308 PSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQ 374 (1363)
T ss_pred CcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCc
Confidence 567788888888888888877 899999999998875 67788899999999998765444443
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-07 Score=88.06 Aligned_cols=135 Identities=19% Similarity=0.168 Sum_probs=98.4
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHH-HHHHHHHHHHhCcEEEEeC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHML-ERTCESAMFLVGGSIGYYS 332 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~-g~~~~~~~L~~G~~vv~~~ 332 (391)
..++...|--||||||+|+-+.++...+-.....+...+...-...+|++..+.-..... |+..-+++--.|++++=..
T Consensus 88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~ 167 (438)
T COG1541 88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPIS 167 (438)
T ss_pred cccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccC
Confidence 445666788899999999999999998887766665554322277888877665532222 2222244444676666444
Q ss_pred C-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHh
Q psy2417 333 G-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQ---IRPSFIKRLMFNMAMGSKENE 388 (391)
Q Consensus 333 ~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~---~~~~slr~~~~gga~~~k~~~ 388 (391)
+ +.+.-++.|..+++|++.++|+.+..|++..... .+..+||.+++|+.+.+++-+
T Consensus 168 ~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R 227 (438)
T COG1541 168 GGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMR 227 (438)
T ss_pred CccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHH
Confidence 4 7889999999999999999999999999986544 334599999999888776544
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=64.18 Aligned_cols=122 Identities=13% Similarity=0.111 Sum_probs=75.4
Q ss_pred ceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcE-EEEeC--CC
Q psy2417 258 LCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGS-IGYYS--GD 334 (391)
Q Consensus 258 ~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~-vv~~~--~~ 334 (391)
-..+.-||||||.|-.+..+...................+..++++..++.-.. ..+..+.+... +-+.+ .+
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-----~ly~~~~~~~~~~~~~~l~~~ 175 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-----NLYQSVNNRWISLDFFDLLAP 175 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-----hHHHHHHhccceeeecCCCcC
Confidence 445667999999999999999877544332222222111445556555531100 11122222211 22222 37
Q ss_pred HHhHHHHHHhcCCcEEecChHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHH
Q psy2417 335 IKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMA-QIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 335 ~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~-~~~~~slr~~~~gga~~~k 385 (391)
.+..++.|.+++|+++.+.|+.+..|++...+ ..+. ++|.++++|.....
T Consensus 176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~~-~~k~ii~~~E~l~~ 226 (430)
T TIGR02304 176 FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELTI-KPKKVISVAEVLEP 226 (430)
T ss_pred HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCCC-CceEEEEccCCCCH
Confidence 88999999999999999999999999987443 3233 67777777765544
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.17 Score=48.54 Aligned_cols=106 Identities=14% Similarity=0.002 Sum_probs=80.7
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCH--HHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccE
Q psy2417 112 YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCP--EWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISV 189 (391)
Q Consensus 112 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~--e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~ 189 (391)
..-+|+.++...+..+|+.|...|..+||+|.++..-+. .-.-..+|+.+.|+.++|+.+ -.-++...++++.++.+
T Consensus 107 ~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~-g~~~~~~~l~~df~~tv 185 (438)
T COG1541 107 VFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISG-GNTERQLELMKDFKPTV 185 (438)
T ss_pred eeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCC-ccHHHHHHHHHhcCCcE
Confidence 566999999999999999999999999999988876111 116778899999999999988 44577788999999999
Q ss_pred EEEcCCcchhHHH---hhc---cc--CccEEEEecCcc
Q psy2417 190 LIVDDDSKCNQII---DRA---PR--CLKKIISIREVR 219 (391)
Q Consensus 190 vi~~~~~~~~~~~---~~~---~~--~l~~ii~~~~~~ 219 (391)
|.+.... ...+. ... +. +++.++.-.+.-
T Consensus 186 I~~tps~-~l~lae~~~~~G~~~~~~~lk~~i~gaE~~ 222 (438)
T COG1541 186 IAATPSY-LLYLAEEAEEEGIDPDKLSLKKGIFGAEPW 222 (438)
T ss_pred EEEChHH-HHHHHHHHHHcCCChhhcceeEEEEecccC
Confidence 9998862 22222 222 11 677777765443
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=90.22 E-value=5.5 Score=37.90 Aligned_cols=132 Identities=12% Similarity=0.165 Sum_probs=69.5
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCC-CCCC-CCEEEEcCChHH---HHHHH--HHHHHHHhCc
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDH-RPKY-SDVLISFLPLAH---MLERT--CESAMFLVGG 326 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~-~~~~-~d~~l~~~pl~h---~~g~~--~~~~~L~~G~ 326 (391)
..+++..++-||||||.|--+.+.+..+......+...+... .... .-.++...|-.. .++.. .....+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 345677888899999998666666666665554444333211 0111 223333334321 11111 1123344455
Q ss_pred EEEEeCC---CHHhHHHHH----HhcCCcEEecChHHHHHHHHHHH-HhcC--chhHHHHHHHHHHHHHH
Q psy2417 327 SIGYYSG---DIKNLTEDM----KTLKPTIMPAVPRLLNRMYDKVM-AQIR--PSFIKRLMFNMAMGSKE 386 (391)
Q Consensus 327 ~vv~~~~---~~~~l~~~i----~~~~~t~~~~~P~~l~~l~~~~~-~~~~--~~slr~~~~gga~~~k~ 386 (391)
. .+..+ |...+.+.+ .+.++..++..|.++-.+..... .... +++=-.++-||+++.+.
T Consensus 167 ~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~ 235 (365)
T PF04443_consen 167 R-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRR 235 (365)
T ss_pred e-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccc
Confidence 5 33333 566555544 45678999999987777766533 2222 22111356688887654
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=85.99 E-value=6.2 Score=38.69 Aligned_cols=81 Identities=11% Similarity=0.010 Sum_probs=62.8
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHH--HHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccE
Q psy2417 112 YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPE--WIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISV 189 (391)
Q Consensus 112 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e--~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~ 189 (391)
...+|.+++...+...+..+...|+.+|+++.++.+-+.. .....+++...|+.++|... .+....++++.++.+
T Consensus 103 ~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~ 179 (445)
T TIGR03335 103 SFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTG 179 (445)
T ss_pred eeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCE
Confidence 3568999999999999999988999999999998875542 22445778899998877653 245577889999998
Q ss_pred EEEcCC
Q psy2417 190 LIVDDD 195 (391)
Q Consensus 190 vi~~~~ 195 (391)
+++...
T Consensus 180 l~~~ps 185 (445)
T TIGR03335 180 IVASVF 185 (445)
T ss_pred EEECHH
Confidence 887554
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >PF13745 HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A | Back alignment and domain information |
|---|
Probab=85.87 E-value=0.1 Score=38.44 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=26.3
Q ss_pred CCCccccchhhcchhhhhccccchhhhhhhhccccccccc
Q psy2417 14 PVDLNNQSEIIREQNLALVGTNETMRLRFYYQSDRSSNLR 53 (391)
Q Consensus 14 ~~~~~~qs~~~~~l~~~~~~~~~~l~~~~~y~~~~~~~~~ 53 (391)
++.+.......+ |.|.+.+.++++++.|+|++++|++.+
T Consensus 49 ~~~~~~~~~~~D-L~l~~~~~~~~l~~~~~Y~~~lf~~~t 87 (91)
T PF13745_consen 49 PIPLENGGAKFD-LTLEVREDGDGLRLQLEYNTDLFSEET 87 (91)
T ss_dssp E-SS--SB-SSS-EEEEEEE-SS-EEEEEEEETTT--HHH
T ss_pred Eeeccccceeee-EEEEEEecCCeEEEEEEEEhHhCCHHH
Confidence 444555666665 999999999999999999999998865
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=84.07 E-value=7.7 Score=37.59 Aligned_cols=83 Identities=11% Similarity=0.043 Sum_probs=64.0
Q ss_pred ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCH--HHHHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccE
Q psy2417 112 YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCP--EWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISV 189 (391)
Q Consensus 112 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~--e~i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~ 189 (391)
...+|..++......++..+...|+.+|+++......+. ......++....|+..+++.+.. .+.+...|++.++.+
T Consensus 92 ~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~ 170 (422)
T TIGR02155 92 VVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDI 170 (422)
T ss_pred EeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCE
Confidence 345688888777777888888889999999877655432 22233567888999999988765 578889999999999
Q ss_pred EEEcCC
Q psy2417 190 LIVDDD 195 (391)
Q Consensus 190 vi~~~~ 195 (391)
+++...
T Consensus 171 l~~~Ps 176 (422)
T TIGR02155 171 IMVTPS 176 (422)
T ss_pred EEEcHH
Confidence 998775
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG | Back alignment and domain information |
|---|
Probab=83.97 E-value=12 Score=34.14 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeEEEccCCC----CHHHHHHHHHhcCccEEEEcCCcc
Q psy2417 122 LRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTL----GPDACAFIINQAEISVLIVDDDSK 197 (391)
Q Consensus 122 ~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~vpl~~~~----~~~~l~~il~~~~~~~vi~~~~~~ 197 (391)
-|+-.||..|++.| -.|.+++.+....... .+...|..+..++-.. ..+++..++++.+++++|+|....
T Consensus 18 ~Rcl~LA~~l~~~g----~~v~f~~~~~~~~~~~--~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~~ 91 (279)
T TIGR03590 18 MRCLTLARALHAQG----AEVAFACKPLPGDLID--LLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDHYGL 91 (279)
T ss_pred HHHHHHHHHHHHCC----CEEEEEeCCCCHHHHH--HHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCCCC
Confidence 57889999998764 3566776665554433 3467888777775432 244688899999999999998643
Q ss_pred hhHHHhhcccCccEEEEecCc
Q psy2417 198 CNQIIDRAPRCLKKIISIREV 218 (391)
Q Consensus 198 ~~~~~~~~~~~l~~ii~~~~~ 218 (391)
........+.....++++|+.
T Consensus 92 ~~~~~~~~k~~~~~l~~iDD~ 112 (279)
T TIGR03590 92 DADWEKLIKEFGRKILVIDDL 112 (279)
T ss_pred CHHHHHHHHHhCCeEEEEecC
Confidence 333333333334467777764
|
This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases. |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=80.06 E-value=1.9 Score=43.23 Aligned_cols=54 Identities=22% Similarity=0.163 Sum_probs=35.0
Q ss_pred CceEEeHHHHHHhhhcc-CCCCCCCCCCCceEEEecCCCCCC-CcEEEeehhHHHH
Q psy2417 230 AIEIIRFDEIERVGAQK-MFEEVPPKPTDLCTICYTSGTTGN-PKGVMLTHGNVIA 283 (391)
Q Consensus 230 ~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~i~~TSGSTG~-PKgV~~th~~l~~ 283 (391)
.+.+.+|+++...-... ........++.+.+...||||||. ||-+.+|...+..
T Consensus 53 ~VPi~~Yed~~pyIeR~~~Ge~~vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~ 108 (528)
T PF03321_consen 53 RVPITDYEDYRPYIERIAEGEENVLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE 108 (528)
T ss_dssp HS--BEHHHHHHHHHHHHTT--CCTSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred hCCCccHHHHHHHHHHHhcCCCCCCCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence 44567888775432211 111224567789999999999999 9999999998765
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 391 | ||||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 3e-08 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 2e-07 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 3e-07 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 4e-07 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 1e-06 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 2e-04 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 2e-04 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 2e-04 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 2e-04 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 2e-04 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 2e-04 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 2e-04 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 9e-04 |
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 3e-34
Identities = 56/249 (22%), Positives = 93/249 (37%), Gaps = 21/249 (8%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
+ L RA SGLL GV+ G V I SQNC E I I++ + L D
Sbjct: 34 HRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNAD 93
Query: 177 ACAFIINQAEISVLIVDDD--SKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234
AF++ SV++ D ++ +KK +I +
Sbjct: 94 EIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLG-GVKKAYAIGDGSGP------------- 139
Query: 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD 294
F + + + F D I +T+ G P+G +++ GN++ A +
Sbjct: 140 -FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLI---AQSSLVDA 195
Query: 295 HRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAV 353
R +DV + LPL H+ + GG+ + D D++ K T+M
Sbjct: 196 WRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEF 255
Query: 354 PRLLNRMYD 362
+L + D
Sbjct: 256 APMLGNILD 264
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 129 bits (328), Expect = 2e-33
Identities = 49/255 (19%), Positives = 84/255 (32%), Gaps = 28/255 (10%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + RAR F S L LGV+P + + + + GA ++ V L P
Sbjct: 51 YGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPA 110
Query: 177 ACAFIINQAEISVLIVDDD--SKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234
+++ + +I Q ++ A ++I Q S
Sbjct: 111 DYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLI--------VSQPRESEPRLAP 162
Query: 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD 294
F+E+ A + D+ Y+SG+TG PKG + TH N+ +
Sbjct: 163 LFEELID-AAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILG 221
Query: 295 HRPKYSDVLISFLPLAH-------MLERTCESAMFLVGGSIGYYSG--DIKNLTEDMKTL 345
+DV+ S L + VG + + + +
Sbjct: 222 IAE--NDVVFSAAKLFFAYGLGNGLT------FPLSVGATAILMAERPTADAIFARLVEH 273
Query: 346 KPTIMPAVPRLLNRM 360
+PT+ VP L M
Sbjct: 274 RPTVFYGVPTLYANM 288
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 3e-32
Identities = 39/249 (15%), Positives = 78/249 (31%), Gaps = 13/249 (5%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y A L S VG+Y N + II + ++ I + L P+
Sbjct: 29 YQNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPN 85
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
+ ++ ++ + + + R++ +
Sbjct: 86 EMTNQMRSIDVQLIFCTLPLE--LRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSN 143
Query: 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI--AAISAALLQLSD 294
+ + + D+ +I +TSGTTG K V T N A L
Sbjct: 144 ETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDR 203
Query: 295 HRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAV 353
+S LP+ H+ + + G ++ + + + +K + T + V
Sbjct: 204 D-----TNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLV 258
Query: 354 PRLLNRMYD 362
P+ LN +
Sbjct: 259 PQTLNWLMQ 267
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 7e-32
Identities = 59/283 (20%), Positives = 112/283 (39%), Gaps = 26/283 (9%)
Query: 84 TLYDAFRKGAKESNNGRCL--GWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSF 141
+L D A++ + + S + +++ + + SG+ GV G
Sbjct: 20 SLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEH 79
Query: 142 VGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDD--SKCN 199
VG+ N ++++T + + V + I+N +E + L+V
Sbjct: 80 VGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFK 139
Query: 200 QIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLC 259
++++ ++++ + E+ E+ G++ D+
Sbjct: 140 PVLEKTG--VERVFVVGG--------------EVNSLSEVMDSGSEDFENVKVNPEEDVA 183
Query: 260 TICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSD-HRPKYSDVLISFLPLAHMLERTCE 318
I YT GTTG PKGVMLTH N+ A LQL+ + D ++ +P+ H E
Sbjct: 184 LIPYTGGTTGMPKGVMLTHFNLAANA----LQLAVATGLSHMDTIVGCMPMFHSAEFGLV 239
Query: 319 SAMFLVGGS-IGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRM 360
+ M VG + + + L E+++ K T AVP LN +
Sbjct: 240 NLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVL 282
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 1e-31
Identities = 54/246 (21%), Positives = 92/246 (37%), Gaps = 22/246 (8%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + + RA + L+ G+ G V ++ E ++ + + L
Sbjct: 31 YAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLH 90
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
+ I AE +++ D + + I A + + ++ ++ A + A E
Sbjct: 91 ELDYFITDAEPKIVVCDPSKR-DGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEA--- 146
Query: 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHR 296
F + DL I YTSGTTG KG ML+H N+ + S L+
Sbjct: 147 -----------FATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASN-SLTLVDYWRFT 194
Query: 297 PKYSDVLISFLPLAHMLERTCES-AMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVP 354
P DVLI LP+ H S GS+ + D + + M + T++ VP
Sbjct: 195 PD--DVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVP 250
Query: 355 RLLNRM 360
R+
Sbjct: 251 TFYTRL 256
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 3e-31
Identities = 62/248 (25%), Positives = 89/248 (35%), Gaps = 21/248 (8%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y Q A L LG+ G V + N E+ GA + V + L
Sbjct: 46 YAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAP 105
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVR-MATMQRARSRAIEIIR 235
+FI++ + V+I AP I +R A + I
Sbjct: 106 EVSFILSDSGSKVVIYGAP--------SAPV-------IDAIRAQADPPGTVTDWIGADS 150
Query: 236 FDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDH 295
E A V D I YTSGTTG+PKGV+ TH +V + AA S
Sbjct: 151 LAER-LRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHS---AASSWASTI 206
Query: 296 RPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVP 354
+Y D L+ LP+ H+ T + G ++ D + + + I AVP
Sbjct: 207 DVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVP 266
Query: 355 RLLNRMYD 362
+LN M
Sbjct: 267 AILNFMRQ 274
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 1e-30
Identities = 40/249 (16%), Positives = 81/249 (32%), Gaps = 7/249 (2%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLG 174
I Y + + + G+N + + S+N ++ + GA + + D
Sbjct: 51 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110
Query: 175 PDACAFIINQAEISVLIVDDDS--KCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIE 232
+N ++ +V+ V K + + P ++KII + T +
Sbjct: 111 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLP-IIQKIIIMDS---KTDYQGFQSMYT 166
Query: 233 IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQL 292
+ E + + I +SG+TG PKGV L H S A +
Sbjct: 167 FVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI 226
Query: 293 SDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMP 351
++ ++S +P H + G + + + ++ K
Sbjct: 227 FGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSAL 286
Query: 352 AVPRLLNRM 360
VP L +
Sbjct: 287 LVPTLFSFF 295
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 3e-30
Identities = 43/257 (16%), Positives = 85/257 (33%), Gaps = 23/257 (8%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLG 174
Y + L ++ G L G+ + + S+NC E+ I + + +
Sbjct: 53 YSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYT 112
Query: 175 PDACAFIINQAEISVLIVDDDS--KCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIE 232
+ ++ +++ K + +I +V Q
Sbjct: 113 LRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLD----T 168
Query: 233 IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQL 292
I+ + A + + I +SG+TG PKGV LTH N++ S A +
Sbjct: 169 FIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI 228
Query: 293 SDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG---------DIKNLTEDMK 343
++ +++ +P H MF G + G D + + ++
Sbjct: 229 YGNQVSPGTAVLTVVPFHHG------FGMFTTLGYL--ICGFRVVMLTKFDEETFLKTLQ 280
Query: 344 TLKPTIMPAVPRLLNRM 360
K T + VP L +
Sbjct: 281 DYKCTSVILVPTLFAIL 297
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 1e-29
Identities = 40/252 (15%), Positives = 82/252 (32%), Gaps = 29/252 (11%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
+ + R + L G+ P V + + N + +I + + L L
Sbjct: 32 HAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSA 91
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
A +I + E++ ++ + +A II
Sbjct: 92 ELAELIKRGEMTAAVIAVGRQ----------------------VADAIFQSGSGARIIFL 129
Query: 237 DEIERVG----AQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQL 292
++ R G E+ +P I YTSGTTG PK ++ + +
Sbjct: 130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESR-VLFMSTQ 188
Query: 293 SDHRPKYSDVLISFLPLAHMLERTCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIM 350
R +V++ +PL H++ A + G+ + + ++ + T +
Sbjct: 189 VGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSL 248
Query: 351 PAVPRLLNRMYD 362
A P L+ +
Sbjct: 249 FATPTHLDALAA 260
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 9e-28
Identities = 61/255 (23%), Positives = 98/255 (38%), Gaps = 28/255 (10%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLG 174
Y L AR SGL +G+ G + ++ + PE+++ GA II A
Sbjct: 50 YTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFST 109
Query: 175 PDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234
P A + +LI ++ D A K++ + S +
Sbjct: 110 PAELAKHAKASRAKLLITQACY-YEKVKDFARESDVKVMCVD-----------SAPDGCL 157
Query: 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA-AISAALLQLS 293
F E+ + + +V P D+ + Y+SGTTG PKGVMLTH +I
Sbjct: 158 HFSELTQADENE-APQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP 216
Query: 294 DHRPKYSDVLISFLPLAH-------MLERTCESAMFLVGGSIGYYSG-DIKNLTEDMKTL 345
+ DV++ LP+ H ML VG I +I +L ++
Sbjct: 217 NLYFHSEDVILCVLPMFHIYALNSIML------CGLRVGAPILIMPKFEIGSLLGLIEKY 270
Query: 346 KPTIMPAVPRLLNRM 360
K +I P VP ++ +
Sbjct: 271 KVSIAPVVPPVMMSI 285
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 5e-26
Identities = 29/204 (14%), Positives = 61/204 (29%), Gaps = 27/204 (13%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + + N + L G+ G + N E+ I ++++ +
Sbjct: 58 YIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQY 117
Query: 177 ACAFIINQAEISVLIVDDDSK-------CNQIIDRAPRCLKKIISIREVRMATMQRARSR 229
I Q + +LI + + + D + I+ +
Sbjct: 118 ELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNL-SPEIILMLNH------------ 164
Query: 230 AIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI--AAISA 287
+ A+ + ++ + G+TG PK + TH + SA
Sbjct: 165 QATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASA 224
Query: 288 ALLQLSDHRPKYSDVLISFLPLAH 311
+ L+ + L+ LP H
Sbjct: 225 EICGLNSN-----TRLLCALPAPH 243
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 5e-26
Identities = 42/258 (16%), Positives = 79/258 (30%), Gaps = 32/258 (12%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + A N L G+ PG + N E IT + V +
Sbjct: 53 YRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRS 112
Query: 177 ACAFIINQAEISVLIVDDDSK-------CNQIIDRAPRCLKKIISIREVRMATMQRARSR 229
+Q E ++LI D N + ++ + + + +Q A +
Sbjct: 113 ELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHS-SIRVVQLLNDSGEHNLQDAINH 171
Query: 230 AIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI--AAISA 287
E F P ++ + GTTG PK + TH + S
Sbjct: 172 PAED--------------FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSV 217
Query: 288 ALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM--FLVGGSIGYYSG-DIKNLTEDMKT 344
+ Q + + +P AH + ++ FL GG++ + ++
Sbjct: 218 EICQFTQQ-----TRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEK 272
Query: 345 LKPTIMPAVPRLLNRMYD 362
+ + VP ++
Sbjct: 273 HQVNVTALVPPAVSLWLQ 290
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 7e-26
Identities = 55/250 (22%), Positives = 102/250 (40%), Gaps = 10/250 (4%)
Query: 115 IHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLG 174
Y+ + +R + LGVN V + NCPE++++ A A
Sbjct: 89 YTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFT 148
Query: 175 PDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234
P A + ++I + ++I I+ I + + R E+
Sbjct: 149 PAEIAKQAKASNTKLIITEARY-VDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELT 207
Query: 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAIS-AALLQLS 293
+ A ++ + V P D+ + Y+SGTTG PKGVMLTH ++ +++ +
Sbjct: 208 QSTT----EASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENP 263
Query: 294 DHRPKYSDVLISFLPLAHM--LERTCESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIM 350
+ DV++ LP+ H+ L + + G +I +I L E ++ K T+
Sbjct: 264 NLYFHSDDVILCVLPMFHIYALNSIMLCGLRV-GAAILIMPKFEINLLLELIQRCKVTVA 322
Query: 351 PAVPRLLNRM 360
P VP ++ +
Sbjct: 323 PMVPPIVLAI 332
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 5e-25
Identities = 39/204 (19%), Positives = 68/204 (33%), Gaps = 31/204 (15%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + RA +G LG+ V + N E+ + + V +
Sbjct: 53 YRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSS 112
Query: 177 ACAFIINQAEISVLIVDDDSK-------CNQIIDRAPRCLKKIISIREVRMATMQRARSR 229
+ AE + I+ D Q+ + P LK II E
Sbjct: 113 EITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP-TLKNIIVAGE------------ 159
Query: 230 AIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI--AAISA 287
A E + +++ + K +D+ + + G+TG K + TH + I S
Sbjct: 160 AEEFLPLEDLHTEPV----KLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSV 215
Query: 288 ALLQLSDHRPKYSDVLISFLPLAH 311
+ L V ++ LP+AH
Sbjct: 216 EVCWLDHS-----TVYLAALPMAH 234
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 44/237 (18%), Positives = 75/237 (31%), Gaps = 40/237 (16%)
Query: 129 SGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEIS 188
+G + V +++ E + A + V L G A I++ + S
Sbjct: 58 AGATAGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPS 117
Query: 189 VLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMF 248
+++ D++ A+E + D R
Sbjct: 118 LVLAPPDAE--------------------------LPPALGALERVDVDVRARGAV---- 147
Query: 249 EEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLP 308
E D + YTSGTTG PKG ++ +A AL DVL+ LP
Sbjct: 148 PEDGADDGDPALVVYTSGTTGPPKGAVIPRRA-LATTLDALADAWQWTG--EDVLVQGLP 204
Query: 309 LAHMLERTCES-AMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVP----RLLNR 359
L H+ GGS+ + + ++ T++ VP R+
Sbjct: 205 LFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELND-GATMLFGVPTMYHRIAET 260
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 2e-21
Identities = 50/266 (18%), Positives = 90/266 (33%), Gaps = 37/266 (13%)
Query: 70 SEGKFLSTLYDDVKTLYDAFRKGAKESNNG---RCLGWRQNISRPYQWIHYNQALLRARN 126
S G + V++L A R A+ + + + Q+ + ++Q R N
Sbjct: 11 SSGLVPRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLN 70
Query: 127 FGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDAC---AFIIN 183
L G G V I + E+++ GA I V L G +++
Sbjct: 71 VAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLS 129
Query: 184 QAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVG 243
+ ++ + + +V +R II D ++
Sbjct: 130 DSSPVAILTTSSA------------------VDDVVQHVARRPGESPPSIIEVDLLDLDA 171
Query: 244 AQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA---AISAALLQLSDHRPKYS 300
+ + + YTSG+T P GV+++H NV + + +D P +
Sbjct: 172 PNG-YTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPN 230
Query: 301 DVLISFLPLAHMLERTCESAMFLVGG 326
L+S+LP H M LV G
Sbjct: 231 SALVSWLPFYH--------DMGLVIG 248
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 2e-19
Identities = 49/259 (18%), Positives = 88/259 (33%), Gaps = 42/259 (16%)
Query: 75 LSTLYDDVKTLYDAFRKGAKESNNGRCLGW---RQNISRPYQWIHYNQALLRARNFGSGL 131
L Y ++L D R A S N + + + Y+ Q A+ + L
Sbjct: 3 LKKEYLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYE-----QLDQHAKAIAATL 57
Query: 132 LGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDAC---AFIINQAEIS 188
G PG V + I G I V +Y I+ ++
Sbjct: 58 QAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPV 117
Query: 189 VLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATM-QRARSRAIEIIRFDEIERVGAQKM 247
++++ D I++ + + I I + IE +
Sbjct: 118 IVLMIADH------------------IKKFTADELNTNPKFLKIPAIALESIELNRSSS- 158
Query: 248 FEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFL 307
++ K D+ + YTSG+T +PKGVM++H N++ + + ++ S+L
Sbjct: 159 WQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNL-NKIFTSFHMND--ETIIFSWL 215
Query: 308 PLAHMLERTCESAMFLVGG 326
P H M L+G
Sbjct: 216 PPHH--------DMGLIGC 226
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 9e-19
Identities = 65/276 (23%), Positives = 106/276 (38%), Gaps = 41/276 (14%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + RAR GL LGV G V N + ++ L P
Sbjct: 50 YAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPK 109
Query: 177 ACAFIINQAEISVLIVDDD--SKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234
A+I+N AE VL+ D + I ++ + + E +A +
Sbjct: 110 EIAYILNHAEDKVLLFDPNLLPLVEAIRGELKT-VQHFVVMDE-------KAPEGYLA-- 159
Query: 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTH-GNVIAAISAAL---L 290
++E +G + VP C + YT+GTTG PKGV+ +H V+ +++A+L
Sbjct: 160 -YEEA--LGEEADPVRVPE--RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT 214
Query: 291 QLSDHRPKYSDVLISFLPLAHMLERTCES-----AMFLVGGSIGYYSG---DIKNLTEDM 342
LS+ DV++ +P+ H + A LVG G D +L E
Sbjct: 215 ALSEK-----DVVLPVVPMFH-----VNAWCLPYAATLVGAKQ-VLPGPRLDPASLVELF 263
Query: 343 KTLKPTIMPAVPRLLNRMYDKVMAQ-IRPSFIKRLM 377
T VP + + D + + R ++RL+
Sbjct: 264 DGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLV 299
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 3e-18
Identities = 25/166 (15%), Positives = 57/166 (34%), Gaps = 15/166 (9%)
Query: 117 YNQALLRARNFGSGLLG-LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGP 175
+ + ++ + L G G+ G V + PEW + G +I + +
Sbjct: 76 FRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKS 135
Query: 176 DACAFIINQAEISVLIVDDD--SKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEI 233
+ + ++ ++ D+ + + + P L+ + + E +S +
Sbjct: 136 TDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS-LRIKLLVSE---------KSCDGWL 185
Query: 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHG 279
+ A V + I +TSGT+G PK ++
Sbjct: 186 NFKKLLN--EASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS 229
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 6e-18
Identities = 31/206 (15%), Positives = 67/206 (32%), Gaps = 10/206 (4%)
Query: 86 YDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIY 145
YD A++S + W + + + + + + G+ G +V +
Sbjct: 59 YDVVDVYARDSPEKLAMIWCDDYGNEKIF-TFKDLKYYSDKAANFFVKHGIGKGDYVMLT 117
Query: 146 SQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRA 205
++ ++ G + I V L + I +A + +++ + + +D A
Sbjct: 118 LKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEA 177
Query: 206 PRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPT---DLCTIC 262
I + + I F + + T D+C +
Sbjct: 178 HAECGDIPLKKAKVGGDVLEGW------IDFRKELEESSPIFERPTGEVSTKNEDICLVY 231
Query: 263 YTSGTTGNPKGVMLTHGNVIAAISAA 288
++SGT G PK V + + I A
Sbjct: 232 FSSGTAGFPKMVEHDNTYPLGHILTA 257
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 25/159 (15%), Positives = 44/159 (27%), Gaps = 44/159 (27%)
Query: 131 LLGLGVNPGSFVGIYSQNCPEWIITEQ------GAYCYSMIIVALYDTLGPDA-CAFIIN 183
LL PG +G+Y + E I Y + + D P A A +
Sbjct: 69 LLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHY------LYI-DLKQPAAWNAELCR 121
Query: 184 QAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVG 243
Q + +++ + + + +
Sbjct: 122 QVDCRLILDCST----------------------------TPTPANGLPCVPVRHLPAAP 153
Query: 244 AQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI 282
A + I ++SGTTG PK + TH +
Sbjct: 154 ASV--ARPCFAADQIAYINFSSGTTGRPKAIACTHAGIT 190
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 8e-10
Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 38/159 (23%)
Query: 131 LLGLGVNPGSFVGIYSQNCPEWIITEQ------GAYCYSMIIVALYDTLGPDA-CAFIIN 183
L G GS V +Y++ E +I AY + + D P+ ++++
Sbjct: 506 LQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAY------LPV-DPKLPEDRISYMLA 558
Query: 184 QAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVG 243
+ + L+ + + ++A + D+ R
Sbjct: 559 DSAAACLLTHQE-----MKEQAAEL-------------------PYTGTTLFIDDQTRFE 594
Query: 244 AQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI 282
Q P D I YTSGTTG PKG + TH N+
Sbjct: 595 EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQ 633
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 1e-09
Identities = 32/167 (19%), Positives = 52/167 (31%), Gaps = 56/167 (33%)
Query: 131 LLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTL--G-----------PDA 177
+ L + S V ++ + M+ G P+
Sbjct: 46 IDSLALLAKSPVLVFGAQTYD------------ML-ATFVALTKSGHAYIPVDVHSAPER 92
Query: 178 CAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFD 237
II A+ S++I ++ I ++
Sbjct: 93 ILAIIEIAKPSLIIAIEEF----------------------------PLTIEGISLVSLS 124
Query: 238 EIERVGAQKMFEEVPP--KPTDLCTICYTSGTTGNPKGVMLTHGNVI 282
EIE +M E K D I +TSGTTG PKGV ++H N++
Sbjct: 125 EIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLL 171
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 8e-09
Identities = 27/169 (15%), Positives = 47/169 (27%), Gaps = 58/169 (34%)
Query: 131 LLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTL--G-----------PDA 177
+ + S + +Y PE MI + + G D
Sbjct: 43 ISSEYPDDRSPIMVYGHMQPE------------MI-INFLGCVKAGHAYIPVDLSIPADR 89
Query: 178 CAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFD 237
I + +L+ + I+ D
Sbjct: 90 VQRIAENSGAKLLLSATAV----------------------------TVTDLPVRIVSED 121
Query: 238 EIERVGAQKMFEEVPP----KPTDLCTICYTSGTTGNPKGVMLTHGNVI 282
++ + P K + I YTSG+TGNPKGV +T+ ++
Sbjct: 122 NLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLV 170
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 2e-08
Identities = 54/437 (12%), Positives = 130/437 (29%), Gaps = 111/437 (25%)
Query: 9 PAIRPPVDLNNQSEIIR------EQNLALVGTNETMRLRFYYQSDRSSNLRGRGREVVRV 62
A D + ++ + E + ++ + + + L + E+V+
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT-----LLSKQEEMVQ- 80
Query: 63 SKFFSGASEGKFLSTLYDDVKTLYDAFRKGAKES---------------NNGRCLGWRQN 107
KF L + K L + ++ N+ + + N
Sbjct: 81 -KFVEEV--------LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-KYN 130
Query: 108 ISRPYQWIHYNQALLRARN---------FGSG--------LLGLGVNPGSFVGIY----- 145
+SR ++ QALL R GSG L V I+
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 146 SQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRA 205
+ N PE ++ ++ L + P+ + + + I + I ++ +++
Sbjct: 191 NCNSPETVL---------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 206 --PRCLKKIISIREVRMATMQRA---RSRAIEIIRFDEI-ERVGAQKMFEEV-------- 251
CL ++ + V+ A A + + RF ++ + + A
Sbjct: 242 PYENCL--LV-LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 252 -PPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLA 310
P + L P+ V+ T+ ++ I+ ++ + V L
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD--KLT 356
Query: 311 HMLERTCESAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPA---VP-----RLLNRMYD 362
++E + L + + + + + ++ P +P + +
Sbjct: 357 TIIESSLNV---L-------EPAEYRKMFDRL-----SVFPPSAHIPTILLSLIWFDVIK 401
Query: 363 KVMAQIRPSFIKRLMFN 379
+ + K +
Sbjct: 402 SDVMVVVNKLHKYSLVE 418
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 2e-08
Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 50/165 (30%)
Query: 131 LLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTL--G-----------PDA 177
+ G+ + VGI + + + + + L G +
Sbjct: 81 FIEKGIGKDTLVGIMMEKSID------------LF-IGILAVLKAGGAYVPIDIEYPKER 127
Query: 178 CAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFD 237
+I++ ++ +L+ ++ ++ F+
Sbjct: 128 IQYILDDSQARMLLTQ-----KHLVHLIHNI-------------------QFNGQVEIFE 163
Query: 238 EIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI 282
E + VP K TDL + YTSGTTGNPKG ML H +
Sbjct: 164 EDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGIS 208
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 54.0 bits (131), Expect = 4e-08
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 230 AIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVI 282
I+ + +E+ + ++ K + I YTSG+TGNPKGV ++ N+
Sbjct: 117 QIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQ 169
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 250 EVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDV 302
+ YTSG+TG PKGV ++ N+ + A + + PK ++
Sbjct: 169 LNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLEL 221
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 6e-06
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 4/118 (3%)
Query: 261 ICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHR-PKYSDVLISFLPLAHMLERTCES 319
+ + GTTG PK V+ + A IS + + L + H++ +
Sbjct: 96 VYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKE 155
Query: 320 AMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLM 377
+GG D + + ++L V + + + D+V + I+ L+
Sbjct: 156 RALRLGGMFFSIDIDPRWV---KRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLV 210
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 391 | |||
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 99.85 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.73 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.73 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.73 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.72 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 91.4 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 90.88 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 88.08 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 83.99 |
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-43 Score=348.93 Aligned_cols=282 Identities=13% Similarity=0.105 Sum_probs=233.9
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
...|+.++|+++++++||++|+.+.+ +.+||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||+
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~ 101 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIICGE------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALL 101 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcCC------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 45689999999999999999999876 799999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc-------hhHHHhhcccCccEEEEecCcchHHHHHHhhCCceE
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK-------CNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEI 233 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-------~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (391)
++|+++||+++.++.+++.+++++++++++|++.... ...+..... ..+.++.++.... .
T Consensus 102 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------~ 168 (544)
T 3o83_A 102 KAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNL-SPEIILMLNHQAT------------D 168 (544)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTC-CCSEEEEETCCTT------------S
T ss_pred HhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhccc-CcceEEEecCCcc------------c
Confidence 9999999999999999999999999999999987632 111222222 4455665554211 1
Q ss_pred EeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHH
Q psy2417 234 IRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHML 313 (391)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 313 (391)
..+.++...............+++++||+|||||||.||||+++|+++.+.+......++ +.++|++++++|++|.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~---~~~~d~~l~~~p~~h~~ 245 (544)
T 3o83_A 169 FGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICG---LNSNTRLLCALPAPHNF 245 (544)
T ss_dssp EEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTT---CCTTCEEEECSCTTSHH
T ss_pred cchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhC---CCCCCeEEEecCcceEe
Confidence 234444433322222224456899999999999999999999999999999999888888 99999999999999999
Q ss_pred HHHH--HHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHHH
Q psy2417 314 ERTC--ESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 314 g~~~--~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~~ 384 (391)
++.. .+.+|..|+++++.+. ++..+++.|+++++|++.++|+++..+++... ...++++||.+++||+...
T Consensus 246 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~ 320 (544)
T 3o83_A 246 MLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFP 320 (544)
T ss_dssp HHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCC
T ss_pred ecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCC
Confidence 9875 5889999999999876 99999999999999999999999999988743 3455678888888887653
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-43 Score=347.28 Aligned_cols=283 Identities=23% Similarity=0.175 Sum_probs=228.5
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHH
Q psy2417 78 LYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQ 157 (391)
Q Consensus 78 ~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~l 157 (391)
..+...|+.++|+++++++|+++|+++.+. .+.+||+||+++++++|++|+++|+++|++|+|+++|+++|++++|
T Consensus 11 ~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 86 (517)
T 3r44_A 11 DDDKMKNIGWMLRQRATVSPRLQAYVEPST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFY 86 (517)
T ss_dssp -CGGGGCHHHHHHHHHHHSTTSEEEEEGGG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHhCCCCeEEEeCCc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHH
Confidence 345567999999999999999999998651 2589999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEe
Q psy2417 158 GAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIR 235 (391)
Q Consensus 158 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (391)
||+++|+++||++|.++.+++.+++++++++++|++... ...+...... ....++.+... ..
T Consensus 87 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 150 (517)
T 3r44_A 87 GAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPS-APVIDAIRAQADPPGTVTDWIGA---------------DS 150 (517)
T ss_dssp HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGG-HHHHHHHHHSSSCCTTCCEEEEH---------------HH
T ss_pred HHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCch-HHHHHHHHhccCCccEEEEccCc---------------cc
Confidence 999999999999999999999999999999999998752 2222111110 11111111110 01
Q ss_pred HHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHH
Q psy2417 236 FDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLER 315 (391)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 315 (391)
+.+...... ...+.....+++++||+|||||||.||||+++|+++.+.+......++ +.++|++++.+|++|++++
T Consensus 151 ~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~~~ 226 (517)
T 3r44_A 151 LAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID---VRYRDRLLLPLPMFHVAAL 226 (517)
T ss_dssp HHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSC---CCTTCEEEECSCTTSHHHH
T ss_pred HHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcC---CCCCCEEEEeCchHHHHHH
Confidence 222222211 112234457899999999999999999999999999999998888887 9999999999999999999
Q ss_pred HHHHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHH-HHHhcCchhHHHHHHHHHHHH
Q psy2417 316 TCESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK-VMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 316 ~~~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~-~~~~~~~~slr~~~~gga~~~ 384 (391)
...+.+++.|+++++.+. ++..+++.+.++++|++.++|++++.+.+. .....++++||.+++||+...
T Consensus 227 ~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~ 297 (517)
T 3r44_A 227 TTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMP 297 (517)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCC
T ss_pred HHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCC
Confidence 987666669999999876 999999999999999999999999999876 345667889999999887653
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-43 Score=348.20 Aligned_cols=283 Identities=21% Similarity=0.246 Sum_probs=237.0
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeec--CCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQN--ISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~--~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
..|+.++|+++++++||++|+++.+. .++..+++||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||
T Consensus 18 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~ 97 (549)
T 3g7s_A 18 KISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYAL 97 (549)
T ss_dssp CCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 56899999999999999999998763 1233478999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc-CccEEEEecCcchHHHHHHhhCCceEEeHHH
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR-CLKKIISIREVRMATMQRARSRAIEIIRFDE 238 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
+++|+++||++|.++.+++.+++++++++++|++... ...+...... .++.++.++.. ...+++
T Consensus 98 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 162 (549)
T 3g7s_A 98 WRVAATPVPINPMYKSFELEHILNDSEATTLVVHSML-YENFKPVLEKTGVERVFVVGGE--------------VNSLSE 162 (549)
T ss_dssp HHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGG-HHHHHHHHTTSCCCEEEEETCS--------------SSCHHH
T ss_pred HHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHH-HHHHHHHHhhCCCcEEEEeCCC--------------CcCHHH
Confidence 9999999999999999999999999999999998863 3333332222 45566666532 124555
Q ss_pred HHHhhhccCCCCCCCC-CCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHH
Q psy2417 239 IERVGAQKMFEEVPPK-PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTC 317 (391)
Q Consensus 239 l~~~~~~~~~~~~~~~-~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 317 (391)
+...+.... ...... +++++||+|||||||.||||+++|+++.+.+......++ +.++|++++.+|++|++++..
T Consensus 163 ~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---~~~~d~~~~~~p~~~~~~~~~ 238 (549)
T 3g7s_A 163 VMDSGSEDF-ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATG---LSHMDTIVGCMPMFHSAEFGL 238 (549)
T ss_dssp HHHHSCSCC-CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHC---CCTTCEEECCSCTTSHHHHHH
T ss_pred HHhcCcccc-ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcC---CCCCCEEEEeCcHHHHHHHHH
Confidence 555433322 222233 389999999999999999999999999999998888888 999999999999999999988
Q ss_pred HHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHh---cCchhHHHHHHHHHHH
Q psy2417 318 ESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQ---IRPSFIKRLMFNMAMG 383 (391)
Q Consensus 318 ~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~---~~~~slr~~~~gga~~ 383 (391)
.+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+..... .+++++|.+++||++.
T Consensus 239 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l 308 (549)
T 3g7s_A 239 VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPV 308 (549)
T ss_dssp HTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCC
T ss_pred HHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccC
Confidence 8889999999999876 9999999999999999999999999999875432 5677888888888644
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-43 Score=350.03 Aligned_cols=278 Identities=19% Similarity=0.194 Sum_probs=231.7
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..|+.++|+++++++||++|+.+.+ +++||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||++
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 97 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCGN------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFR 97 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeCC------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 4689999999999999999999866 7999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc-------hhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEE
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK-------CNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-------~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (391)
+|+++||++|.++.+++.+++++++++++|++.... ...+....+ .++.++..+.... +.
T Consensus 98 ~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------~~ 164 (539)
T 1mdb_A 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP-TLKNIIVAGEAEE------------FL 164 (539)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCT-TCCCEEEESCCTT------------SE
T ss_pred cCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCC-CccEEEEcCCccc------------hh
Confidence 999999999999999999999999999999987521 112222222 4455555443110 01
Q ss_pred eHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHH
Q psy2417 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLE 314 (391)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 314 (391)
.+ ..... .........+++++||+|||||||.||||+++|+++++.+......++ +.++|++++.+|++|+++
T Consensus 165 ~~---~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~---~~~~d~~l~~~p~~h~~~ 237 (539)
T 1mdb_A 165 PL---EDLHT-EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCW---LDHSTVYLAALPMAHNYP 237 (539)
T ss_dssp EG---GGCCC-CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHT---CCTTCEEEECSCTTSHHH
T ss_pred hh---hhccc-cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhC---CCCCCEEEEeecccccch
Confidence 11 11001 111123356899999999999999999999999999999988888887 899999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHH
Q psy2417 315 RTC--ESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 315 ~~~--~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~~k 385 (391)
+.. .+.+|+.|+++++.+. ++..+++.|+++++|++.++|+++..+++... ...++++||.+++||+...+
T Consensus 238 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~ 312 (539)
T 1mdb_A 238 LSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSA 312 (539)
T ss_dssp HHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCH
T ss_pred hhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCH
Confidence 985 6899999999999876 99999999999999999999999999988743 45678899999999886544
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=343.84 Aligned_cols=277 Identities=23% Similarity=0.268 Sum_probs=225.2
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..|+.++|+++++++||++|+.+.+ +.+||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||++
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 78 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMVDG------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVAL 78 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHCCCceEEEECC------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 5689999999999999999999866 7999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEeHHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIRFDEI 239 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (391)
+|+++||++|.++.+++.+++++++++++|++... ...+...... .++.++.++.... .+..+
T Consensus 79 ~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--- 143 (509)
T 3ivr_A 79 IGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDY-RDIVAGVLPSLGGVKKAYAIGDGSG-----------PFAPF--- 143 (509)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTT-HHHHHHHGGGCSSCCEEEESSCCCS-----------SCEEG---
T ss_pred hCCEEEecCCCCCHHHHHHHHHhcCceEEEECcch-hhhHHhhhcccCCceEEEEcCCCCc-----------ChhhH---
Confidence 99999999999999999999999999999999863 2222222221 5566666654210 01111
Q ss_pred HHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHH
Q psy2417 240 ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCES 319 (391)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 319 (391)
...............++|++||+|||||||.||||+++|+++.+.+......++ +.++|++++.+|++|++++...+
T Consensus 144 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~g~~~~~ 220 (509)
T 3ivr_A 144 KDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWR---LTEADVNLGMLPLFHVTGLGLML 220 (509)
T ss_dssp GGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTT---CCTTCEEEECSCTTSHHHHHHHH
T ss_pred hhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhC---CCCCcEEEEeCCCcchhHHHHHH
Confidence 110111111223457899999999999999999999999999999999888887 99999999999999999999887
Q ss_pred HHHHhCcEEEEe-CCCHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q psy2417 320 AMFLVGGSIGYY-SGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 320 ~~L~~G~~vv~~-~~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~ 383 (391)
.+++.|++.++. ..++..+++.|+++++|+++++|+++..+++.. ...+++++|.++.+|+..
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-~~~~l~~lr~~~~~g~~~ 284 (509)
T 3ivr_A 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA-APAQLASLRAVTGLDTPE 284 (509)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC-CGGGGTTCCEEEEECCHH
T ss_pred HHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc-cccchhhhheecccCChH
Confidence 655555555544 449999999999999999999999999998764 344566788777777663
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-43 Score=348.86 Aligned_cols=290 Identities=22% Similarity=0.290 Sum_probs=236.4
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHH
Q psy2417 78 LYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQ 157 (391)
Q Consensus 78 ~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~l 157 (391)
+.+...|+.++|+++++++||++|+++.+. .+++||+||+++++++|++|+++|+++|++|+|+++|+++|++++|
T Consensus 17 ~~p~~~~l~~~l~~~a~~~p~~~a~~~~~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 92 (536)
T 3ni2_A 17 YIPKNLPLHSYVLENLSNHSSKPCLINGAN----GDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFL 92 (536)
T ss_dssp CCCSSCCHHHHHTTTGGGSTTSEEEEETTT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHhhcCCCceEEEECCC----CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 345567999999999999999999988531 2789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc-CccEEEEecCcchHHHHHHhhCCceEEeH
Q psy2417 158 GAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR-CLKKIISIREVRMATMQRARSRAIEIIRF 236 (391)
Q Consensus 158 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (391)
||+++|+++||++|.++.+++.+++++++++++|++... ...+.+.... .+ .++.++... .....+
T Consensus 93 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~~~-~~~~~~~~~-----------~~~~~~ 159 (536)
T 3ni2_A 93 GASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACY-YEKVKDFARESDV-KVMCVDSAP-----------DGCLHF 159 (536)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGG-THHHHHHHHHHTC-EEEESSCCC-----------TTCEET
T ss_pred HHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHH-HHHHHHHHhhcCc-eEEEecCCC-----------CCccCH
Confidence 999999999999999999999999999999999998753 3333222211 22 345554321 123456
Q ss_pred HHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCC-CCCCCCEEEEcCChHHHHHH
Q psy2417 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDH-RPKYSDVLISFLPLAHMLER 315 (391)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~ 315 (391)
+++....... .+.....++|++||+|||||||.||||+++|+++++.+.......... .+.++|++++.+|++|++++
T Consensus 160 ~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (536)
T 3ni2_A 160 SELTQADENE-APQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYAL 238 (536)
T ss_dssp HHHHTSCGGG-CCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHH
T ss_pred HHHhhccccc-cccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHH
Confidence 6655433222 233446789999999999999999999999999998877665422111 27889999999999999999
Q ss_pred HHH-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHH
Q psy2417 316 TCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 316 ~~~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~k 385 (391)
... +.+|..|+++++.+. ++..+++.++++++|++.++|+++..+.+.. ....++++||.+++||+...+
T Consensus 239 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~ 311 (536)
T 3ni2_A 239 NSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGK 311 (536)
T ss_dssp HHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCH
T ss_pred HHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCH
Confidence 765 889999999999876 9999999999999999999999999998763 355678899999999876543
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=342.05 Aligned_cols=272 Identities=17% Similarity=0.221 Sum_probs=219.7
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
.|+.++|+++++++||++|+.+.+. .+++||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 77 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPAR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRL 77 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTT----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCC----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 5799999999999999999998621 178999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEE--cCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHH
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIV--DDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~--~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (391)
|+++||++|.++.+++.+++++++++++++ +... ...+..... .++ ++ .++++.
T Consensus 78 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~-~~~-~~---------------------~~~~~~ 133 (504)
T 1t5h_X 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV-ADAIFQSGS-GAR-II---------------------FLGDLV 133 (504)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CH-HHHHHHHCC-CCE-EE---------------------EGGGTE
T ss_pred CcEEEecCCccChHHHHHHHhhcCCcEEEEecchhh-hhhhhhccc-cce-eE---------------------Eecchh
Confidence 999999999999999999999999999999 5531 222212222 222 22 222221
Q ss_pred Hhhh----ccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCC--CCCCEEEEcCChHHHHH
Q psy2417 241 RVGA----QKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRP--KYSDVLISFLPLAHMLE 314 (391)
Q Consensus 241 ~~~~----~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~--~~~d~~l~~~pl~h~~g 314 (391)
..+. ..........+++++||+|||||||.||||+++|+++.+.+......++ + .++|++++.+|++|++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~g 210 (504)
T 1t5h_X 134 RDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVG---LRHGRHNVVLGLMPLYHVVG 210 (504)
T ss_dssp ETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTC---CCSSTTCEEEECSCTTSHHH
T ss_pred hcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhC---CCCCCCceEEeecchhhcch
Confidence 1110 0011113346799999999999999999999999999999888777776 6 78999999999999999
Q ss_pred HHH-HHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-H--HhcCchhHHHHHHHHHHHHH
Q psy2417 315 RTC-ESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-M--AQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 315 ~~~-~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~--~~~~~~slr~~~~gga~~~k 385 (391)
+.. .+.+|+.|+++++.+. ++..+++.|+++++|+++++|++++.|.+.. . ...++++||.+++||+....
T Consensus 211 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~ 286 (504)
T 1t5h_X 211 FFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPD 286 (504)
T ss_dssp HTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCH
T ss_pred HHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCH
Confidence 854 5899999999999876 9999999999999999999999999998864 2 33467899999999886543
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=344.21 Aligned_cols=283 Identities=22% Similarity=0.254 Sum_probs=230.9
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..|+.++|+++++++||++|+.+.+ ++..+++||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||++
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~--~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 94 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLH--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPG 94 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECT--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEec--CCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHh
Confidence 4689999999999999999998632 12237899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEeHHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIRFDEI 239 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (391)
+|+++||++|.++.+++.+++++++++++|++... ...+...... .++.++.++..... ....++++
T Consensus 95 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 163 (541)
T 1v25_A 95 MGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNL-LPLVEAIRGELKTVQHFVVMDEKAPE----------GYLAYEEA 163 (541)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGG-HHHHHHHGGGCSSCCEEEESSSCCCT----------TCEEHHHH
T ss_pred cCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhH-HHHHHHHHhhCCCccEEEEecCCCCc----------ccccHHHH
Confidence 99999999999999999999999999999998752 2222222111 45567766543210 12345554
Q ss_pred HHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHH--HHhhcCCCCCCCCEEEEcCChHHHHHHHH
Q psy2417 240 ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAA--LLQLSDHRPKYSDVLISFLPLAHMLERTC 317 (391)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 317 (391)
..... ......++++++|+|||||||.||||+++|+++++..... ...++ +.++|++++.+|++|++++..
T Consensus 164 ~~~~~----~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~---~~~~d~~l~~~p~~h~~~~~~ 236 (541)
T 1v25_A 164 LGEEA----DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVLPVVPMFHVNAWCL 236 (541)
T ss_dssp CCSCC----CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTC---CCTTCEEEECSCTTSHHHHTH
T ss_pred hhccC----CcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhccccc---CCCCCEEEEeccchhhhHHHH
Confidence 32111 1133467899999999999999999999999998776542 23344 789999999999999999977
Q ss_pred HHHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHHH
Q psy2417 318 ESAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 318 ~~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~~ 384 (391)
.+.+++.|+++++.+. ++..+++.++++++|+++++|+++..|.+... ...++++||.+++||+...
T Consensus 237 ~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~ 306 (541)
T 1v25_A 237 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAP 306 (541)
T ss_dssp HHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCC
T ss_pred HHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCC
Confidence 7899999999999864 89999999999999999999999999988743 4567789999998887654
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=345.01 Aligned_cols=291 Identities=15% Similarity=0.139 Sum_probs=231.0
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..|+.++|+++++++|+++|++.... +...+.+||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||++
T Consensus 19 ~~tl~~~l~~~a~~~p~~~a~~a~~~-~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 97 (550)
T 3rix_A 19 DGTAGEQLHKAMKRYALVPGTIAFTD-AHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF 97 (550)
T ss_dssp CSCHHHHHHHHHHHHHTSTTCEEEEE-TTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCceEEEeee-cCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHH
Confidence 46999999999999999999762211 11237899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHh---hcccCccEEEEecCcchHHHHHHhhCCceEEeHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIID---RAPRCLKKIISIREVRMATMQRARSRAIEIIRFDE 238 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~---~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
+|+++||+++.++.+++.+++++++++++|++... ...+.. ..+ .++.++.++.... ......+.+
T Consensus 98 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~~ 166 (550)
T 3rix_A 98 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKG-LQKILNVQKKLP-IIQKIIIMDSKTD---------YQGFQSMYT 166 (550)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGG-HHHHHHHHHHCT-TCCEEEETTCSSC---------BTTBCBHHH
T ss_pred cCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHH-HHHHHHHHhhCC-CcceEEEEcCCcc---------ccCcccHHH
Confidence 99999999999999999999999999999998863 333322 222 5667777665321 112345666
Q ss_pred HHHhhhccCC-----CC-CCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHH
Q psy2417 239 IERVGAQKMF-----EE-VPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHM 312 (391)
Q Consensus 239 l~~~~~~~~~-----~~-~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 312 (391)
+......... .+ ....++++++|+|||||||.||||+++|+++++.+......+....+.++|++++.+|++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 246 (550)
T 3rix_A 167 FVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHG 246 (550)
T ss_dssp HHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSH
T ss_pred HhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHH
Confidence 6544332111 11 12245789999999999999999999999999887766554211127889999999999999
Q ss_pred HHHHHHHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHH-HHHhcCchhHHHHHHHHHHHH
Q psy2417 313 LERTCESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK-VMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 313 ~g~~~~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~-~~~~~~~~slr~~~~gga~~~ 384 (391)
+|+...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.+. .....++++||.+++||+...
T Consensus 247 ~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~ 320 (550)
T 3rix_A 247 FGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLS 320 (550)
T ss_dssp HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCC
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCC
Confidence 999888999999999999866 999999999999999999999999999887 345667889999999987653
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-43 Score=380.71 Aligned_cols=319 Identities=18% Similarity=0.182 Sum_probs=245.3
Q ss_pred hhhhhccccchhhhhhhhccccccccc----------------CCCCccCccCcccc------cCCCCCcceeccCCCCC
Q psy2417 27 QNLALVGTNETMRLRFYYQSDRSSNLR----------------GRGREVVRVSKFFS------GASEGKFLSTLYDDVKT 84 (391)
Q Consensus 27 l~~~~~~~~~~l~~~~~y~~~~~~~~~----------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~t 84 (391)
|++.+ ..++++.++|+|++++|++.+ ..+.......++.. .....+....+.+ ..+
T Consensus 388 L~l~~-~~~~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~-~~~ 465 (1304)
T 2vsq_A 388 LNLMA-SPGDEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVDDREREFLLTGLNPPAQAHE-TKP 465 (1304)
T ss_dssp EEEEE-ECSSSCEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCCCCHHHHHHHHTTTSCCCCCCC-CCC
T ss_pred eEEEE-ecCCcEEEEEEECCccCCHHHHHHHHHHHHHHHHHhccCccccccccCCCCHHHHHHHHHhcCCCCCCCC-CCC
Confidence 66654 457889999999999999976 22222222222211 0111111112222 368
Q ss_pred HHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCC
Q psy2417 85 LYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSM 164 (391)
Q Consensus 85 l~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~ 164 (391)
++++|+++++++||++|+.+.+ +.+||+||+++++++|++|+++|+++|++|+|+++|++++++++|||+++|+
T Consensus 466 l~~~~~~~~~~~p~~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~ 539 (1304)
T 2vsq_A 466 LTYWFKEAVNANPDAPALTYSG------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGA 539 (1304)
T ss_dssp HHHHHHHHHHHCTTSEEEESSS------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCeEEEECC------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999876 7999999999999999999999999999999999999999999999999999
Q ss_pred eEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhh
Q psy2417 165 IIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGA 244 (391)
Q Consensus 165 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (391)
++|||||.+|.+++.++++++++++++++... . ......+ ....++.+++... ...
T Consensus 540 ~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~-~-~~~~~~~-~~~~~~~~~~~~~---------------------~~~ 595 (1304)
T 2vsq_A 540 AYLPVDPKLPEDRISYMLADSAAACLLTHQEM-K-EQAAELP-YTGTTLFIDDQTR---------------------FEE 595 (1304)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCCEEEECSTT-C-TTSTTCC-CCSEEEESSCGGG---------------------GGS
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCEEEECcch-h-hhhhccC-CCCcEEEeccccc---------------------ccc
Confidence 99999999999999999999999999998752 1 1111111 1223333332110 000
Q ss_pred ccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHh
Q psy2417 245 QKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLV 324 (391)
Q Consensus 245 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~ 324 (391)
..........++++|||+|||||||+||||+++|+++.+. .+....++ ++++|+++++.|++|+.+....+.+|+.
T Consensus 596 ~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~---~~~~d~~l~~~~~~fd~~~~~~~~~l~~ 671 (1304)
T 2vsq_A 596 QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMA---FSDQDTFLSVSNYAFDAFTFDFYASMLN 671 (1304)
T ss_dssp CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSC---CCTTCEEEECSCTTSTHHHHHHHHHHTT
T ss_pred ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcC---CCCCCEEEEECCccHHHHHHHHHHHHHc
Confidence 1111223457899999999999999999999999999876 33333444 8899999999999999999888999999
Q ss_pred CcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q psy2417 325 GGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 325 G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~ 383 (391)
|+++++.+. ++..+.+.|.++++|+++++|++++.+.+.. ...+++||.+++||+..
T Consensus 672 G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~lr~~~~gGe~l 732 (1304)
T 2vsq_A 672 AARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG--EDWMKGLRCILFGGERA 732 (1304)
T ss_dssp TCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC--SHHHHTCSEEEEESSCC
T ss_pred CCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc--hhcCCCccEEEEecCCC
Confidence 999999864 8999999999999999999999999997641 12245778788887643
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=341.79 Aligned_cols=291 Identities=14% Similarity=0.125 Sum_probs=235.2
Q ss_pred CCCCCH-HHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHH
Q psy2417 80 DDVKTL-YDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQG 158 (391)
Q Consensus 80 ~~~~tl-~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA 158 (391)
+...++ +++|+++++++||++|+.+.+. ++..+.+||+||+++++++|.+|+++|+++||+|+|+++|+++|++++||
T Consensus 52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA 130 (580)
T 3etc_A 52 PENFNFAYDVVDVYARDSPEKLAMIWCDD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLG 130 (580)
T ss_dssp CSSCCHHHHTHHHHHHHCTTCEEEEEEES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHH
T ss_pred cccchHHHHHHHHHHhhCCCCEEEEEEcC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 334444 5999999999999999998653 23458999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcch-h---HHHhhcccCc-cEEEEecCcchHHHHHHhhCCceE
Q psy2417 159 AYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKC-N---QIIDRAPRCL-KKIISIREVRMATMQRARSRAIEI 233 (391)
Q Consensus 159 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-~---~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~ 233 (391)
|+++|+++||+++.++.+++.+++++++++++|++.+... . .+....+ .+ ..++.++... ...+
T Consensus 131 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~ 199 (580)
T 3etc_A 131 LHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECG-DIPLKKAKVGGDV----------LEGW 199 (580)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHC-SCCCEEEEESSSC----------CTTC
T ss_pred HHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCC-CcceEEEEeCCcc----------cccc
Confidence 9999999999999999999999999999999999876421 2 2222222 33 4555555421 1124
Q ss_pred EeHHHHHHhhhccCCCC---CCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChH
Q psy2417 234 IRFDEIERVGAQKMFEE---VPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLA 310 (391)
Q Consensus 234 ~~~~~l~~~~~~~~~~~---~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 310 (391)
..+.+...........+ ....++|+++|+|||||||.||||+++|.++++.+.......+ +.+++++++.+|++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 276 (580)
T 3etc_A 200 IDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQN---VEDDGLHYTVADSG 276 (580)
T ss_dssp EEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSC---CCTTCEEEECCCTT
T ss_pred ccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhC---CCCCceEEEeCChH
Confidence 56766655433322112 2457899999999999999999999999999988776665555 88999999999999
Q ss_pred HHHHHHHH-HHHHHhCcEEEEeC---CCHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q psy2417 311 HMLERTCE-SAMFLVGGSIGYYS---GDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 311 h~~g~~~~-~~~L~~G~~vv~~~---~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~k 385 (391)
|+.+++.. +.++..|+++++.+ .++..+++.|+++++|+++++|++++.|.+......++++||.+++||++...
T Consensus 277 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~l~~ 355 (580)
T 3etc_A 277 WGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNP 355 (580)
T ss_dssp STHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCCCH
T ss_pred HHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCCCCH
Confidence 99998875 88999999999873 28999999999999999999999999998764445677899999998876543
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=349.50 Aligned_cols=295 Identities=15% Similarity=0.208 Sum_probs=234.6
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
.++.++|+++++++||++|+++.+..++..+.+||+||+++++++|++|+++|+++|++|+|+++|++++++++|||+++
T Consensus 76 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 155 (652)
T 1pg4_A 76 NLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARI 155 (652)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence 46889999999999999999985432234589999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc-----------hhHHHhhcc-cCccEEEEecCcchHHHHHHhhCC
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK-----------CNQIIDRAP-RCLKKIISIREVRMATMQRARSRA 230 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----------~~~~~~~~~-~~l~~ii~~~~~~~~~~~~~~~~~ 230 (391)
|++++|+++.++.+++.++++++++++||++.... ....+.... ..++.++.++...... ....
T Consensus 156 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~~~~ 231 (652)
T 1pg4_A 156 GAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI----DWQE 231 (652)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC----CCCB
T ss_pred CcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc----cccC
Confidence 99999999999999999999999999999987521 111222111 1356777765421100 0000
Q ss_pred ceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHH-HHHHhhcCCCCCCCCEEEEcCCh
Q psy2417 231 IEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAIS-AALLQLSDHRPKYSDVLISFLPL 309 (391)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~~~~d~~l~~~pl 309 (391)
.....|+++...... ...+....+++++||+|||||||.||||+++|++++..+. .....++ +.++|++++++|+
T Consensus 232 ~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~---~~~~d~~l~~~~~ 307 (652)
T 1pg4_A 232 GRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFD---YHPGDIYWCTADV 307 (652)
T ss_dssp TTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTT---CCTTCEEEECSCT
T ss_pred CCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcC---CCCCCEEEEccCC
Confidence 123567777643221 1122344689999999999999999999999999987764 3444566 8899999999999
Q ss_pred HHHHHHHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH---HhcCchhHHHHHHHH
Q psy2417 310 AHMLERTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM---AQIRPSFIKRLMFNM 380 (391)
Q Consensus 310 ~h~~g~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~---~~~~~~slr~~~~gg 380 (391)
+|++|+... +.+|+.|+++++.+. ++..+++.|+++++|+++++|++++.|.+... ...++++||.+++||
T Consensus 308 ~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gG 387 (652)
T 1pg4_A 308 GWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVG 387 (652)
T ss_dssp TSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEES
T ss_pred eeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEec
Confidence 999999554 899999999999863 78999999999999999999999999987632 345678999999888
Q ss_pred HHHHH
Q psy2417 381 AMGSK 385 (391)
Q Consensus 381 a~~~k 385 (391)
+....
T Consensus 388 e~l~~ 392 (652)
T 1pg4_A 388 EPINP 392 (652)
T ss_dssp SCCCH
T ss_pred CCCCH
Confidence 76543
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-42 Score=346.99 Aligned_cols=262 Identities=17% Similarity=0.098 Sum_probs=217.9
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 81 DVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 81 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
...|++++|+++++++||++|+.+.+ +.+||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||+
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lail 98 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDRF------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAIL 98 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcCC------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 35699999999999999999999877 799999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHH
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (391)
++|+++||+||.++.+++.+++++++++++++...... . .. .+..+ .+.. .
T Consensus 99 kaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~-~-~~----~~~~~-~~~~---------------------~- 149 (620)
T 4dg8_A 99 LSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPT-P-AN----GLPCV-PVRH---------------------L- 149 (620)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCC-C-CT----TSCEE-EGGG---------------------C-
T ss_pred HhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccc-c-cc----CCcee-eecc---------------------C-
Confidence 99999999999999999999999999999997664210 0 00 11111 0000 0
Q ss_pred HhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHH
Q psy2417 241 RVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESA 320 (391)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~ 320 (391)
.............+++++||+|||||||.||||+++|+++.+.+.. ...++ +.++|++++++|++|++++...+.
T Consensus 150 -~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~---~~~~d~~l~~~p~~~~~~~~~~~~ 224 (620)
T 4dg8_A 150 -PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLA---FAPQMRFLVNSPLSFDAATLEIWG 224 (620)
T ss_dssp -CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGT---TCTTCEEEECSCTTSTHHHHHHHH
T ss_pred -CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhC---CCCCCEEEEECccCHHHHHHHHHH
Confidence 0000011112346899999999999999999999999999887655 34455 889999999999999999999999
Q ss_pred HHHhCcEEEEeCC---CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy2417 321 MFLVGGSIGYYSG---DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 321 ~L~~G~~vv~~~~---~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~ 384 (391)
+|+.|+++++.+. ++..+++.|+++++|+++++|++++.+.+. ...++++||.+++||+...
T Consensus 225 ~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~--~~~~l~~lr~v~~gGe~l~ 289 (620)
T 4dg8_A 225 ALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDL--DPDCLGGLRQLLTGGDILS 289 (620)
T ss_dssp HHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHH--CGGGGTTCSEEEEESSCCC
T ss_pred HHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhc--ChhhCCCccEEEEEeCcCC
Confidence 9999999999742 899999999999999999999999999764 2345678898888887543
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=341.50 Aligned_cols=279 Identities=16% Similarity=0.159 Sum_probs=231.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 80 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
....|+.++|+++++ ||++|+.+.+ +.+||+||+++++++|++|+++|+++|++|+|+++|++++++++|||
T Consensus 24 ~~~~~l~~~~~~~a~--pd~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~ 95 (617)
T 3rg2_A 24 WQDLPLTDILTRHAA--SDSIAVIDGE------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFAL 95 (617)
T ss_dssp CCCCCTTHHHHTTTT--CCSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCcCCHHHHHHHhhC--CCCeEEecCC------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence 456789999999988 9999999877 79999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc-------hhHHHhhcccCccEEEEecCcchHHHHHHhhCCce
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK-------CNQIIDRAPRCLKKIISIREVRMATMQRARSRAIE 232 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-------~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (391)
+++|+++||+++.++.+++.++++++++++++++.... ...+..... .++.+..++....
T Consensus 96 l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------ 162 (617)
T 3rg2_A 96 LKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHS-SIRVVQLLNDSGE------------ 162 (617)
T ss_dssp HHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHST-TCCEEEEETCCST------------
T ss_pred HhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCC-ccceeeecccccc------------
Confidence 99999999999999999999999999999999987632 111122222 4455555543221
Q ss_pred EEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHH
Q psy2417 233 IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHM 312 (391)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 312 (391)
..+.+....... .....+..++++|||+|||||||.||||+++|+++.+.+......++ +.++|++++++|++|.
T Consensus 163 -~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~---~~~~~~~l~~~p~~~~ 237 (617)
T 3rg2_A 163 -HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQ---FTQQTRYLCAIPAAHN 237 (617)
T ss_dssp -TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHT---CCTTCEEEECSCTTSH
T ss_pred -cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcC---CCCcceEEEeccchhh
Confidence 122333222111 11223456899999999999999999999999999999999888888 9999999999999999
Q ss_pred HHHHH--HHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHh---cCchhHHHHHHHHHHHH
Q psy2417 313 LERTC--ESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQ---IRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 313 ~g~~~--~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~---~~~~slr~~~~gga~~~ 384 (391)
+++.. .+.+|+.|+++++.+. ++..+++.++++++|++.++|+++..+.+..... .++++||.+++||+...
T Consensus 238 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~ 315 (617)
T 3rg2_A 238 YAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLS 315 (617)
T ss_dssp HHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCC
T ss_pred hhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCC
Confidence 99875 5899999999999865 8999999999999999999999999998875432 25778998888887653
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=346.99 Aligned_cols=296 Identities=17% Similarity=0.179 Sum_probs=235.1
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHH-hCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLL-GLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
.++.++|+++++++||++|+++.+...+..+++||+||+++++++|++|+ ++|+++||+|+|+++|++|+++++|||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 57889999999999999999986432234589999999999999999999 99999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcch--------hHHHhhccc--CccEEEEecCcchHHHHHHhhCCc
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKC--------NQIIDRAPR--CLKKIISIREVRMATMQRARSRAI 231 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~--------~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~ 231 (391)
+|++++|+++.++.+++.++++++++++||++..... ..+.+.... .++.+++++...... ......
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---~~~~~~ 238 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---VAFHAP 238 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---CCCCSS
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCc---cccCCC
Confidence 9999999999999999999999999999999875311 111122211 456777775421100 000011
Q ss_pred eEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHH-HHHhhcCCCCCCCCEEEEcCChH
Q psy2417 232 EIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISA-ALLQLSDHRPKYSDVLISFLPLA 310 (391)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~~~~d~~l~~~pl~ 310 (391)
....|+++...... ...+.+..+++++||+|||||||.||||+++|++++..... ....+. +.++|++++.+|++
T Consensus 239 ~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~ 314 (663)
T 1ry2_A 239 RDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFD---THQEDVFFTAGDIG 314 (663)
T ss_dssp SEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSC---CCSSCEEEECSCTT
T ss_pred ccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcC---CCCCcEEEEcCCcH
Confidence 24567776543221 11233456899999999999999999999999999877643 344566 88999999999999
Q ss_pred HHHHHHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH---HhcCchhHHHHHHHHH
Q psy2417 311 HMLERTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM---AQIRPSFIKRLMFNMA 381 (391)
Q Consensus 311 h~~g~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~---~~~~~~slr~~~~gga 381 (391)
|++|+... +.+|+.|+++++.+. ++..+++.|++++||+++++|++++.|.+... ...++++||.+++||+
T Consensus 315 ~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 394 (663)
T 1ry2_A 315 WITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGE 394 (663)
T ss_dssp SHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSS
T ss_pred HhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcC
Confidence 99999554 899999999999863 78899999999999999999999999976522 3456789999998887
Q ss_pred HHHH
Q psy2417 382 MGSK 385 (391)
Q Consensus 382 ~~~k 385 (391)
+...
T Consensus 395 ~l~~ 398 (663)
T 1ry2_A 395 PIAA 398 (663)
T ss_dssp CCCH
T ss_pred CCCH
Confidence 6544
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-42 Score=338.17 Aligned_cols=266 Identities=16% Similarity=0.175 Sum_probs=226.0
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGL-GVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
.++.++|+++++++||++|+.+.+ +++||+||+++++++|++|.+. |.++|++|+++++|+++|++++|||++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~ 74 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQG------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVK 74 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCC------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 378999999999999999999876 7999999999999999999985 888999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIER 241 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (391)
+|+++||+++.++.+++.+++++++++++|++.......+ . ..+..+.++++..
T Consensus 75 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~----~----------------------~~~~~~~~~~~~~ 128 (511)
T 3e7w_A 75 AGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAV----G----------------------QQIQTVSAEELLE 128 (511)
T ss_dssp HTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCC----C----------------------CSSCEEEHHHHHT
T ss_pred hCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhc----c----------------------cccceecHhhhhc
Confidence 9999999999999999999999999999999765311110 0 0122345555544
Q ss_pred hhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHH
Q psy2417 242 VGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM 321 (391)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~ 321 (391)
.............++++++|+|||||||.||||+++|+++.+.+......++ +.++|++++++|++|++++...+.+
T Consensus 129 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~~~~~~~~~ 205 (511)
T 3e7w_A 129 NEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFP---VSGGKIFLNQAPFSFDLSVMDLYPC 205 (511)
T ss_dssp SCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHST---TTTTCEEEECSCTTSTHHHHHHHHH
T ss_pred cccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcC---CCccceEEEeCCccHHHHHHHHHHH
Confidence 3222222223456899999999999999999999999999999998888887 8999999999999999999888999
Q ss_pred HHhCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q psy2417 322 FLVGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 322 L~~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~ 383 (391)
|..|+++++.+. ++..+++.++++++|++.++|+++..+++.. ....+++++|.+++||+..
T Consensus 206 l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l 272 (511)
T 3e7w_A 206 LQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVL 272 (511)
T ss_dssp HHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCC
T ss_pred HhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCC
Confidence 999999999764 7899999999999999999999999988753 2344567888888888654
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=335.11 Aligned_cols=275 Identities=18% Similarity=0.183 Sum_probs=217.5
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeec---CCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHH
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQN---ISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQG 158 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~---~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA 158 (391)
..|+.++|+++++++||++|+++.+. .++..+++||+||+++++++|++|+++|+ +|++|+|+++|+++|++++||
T Consensus 23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA 101 (480)
T 3t5a_A 23 VRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLG 101 (480)
T ss_dssp -CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHH
T ss_pred cccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHH
Confidence 56899999999999999999998762 12234799999999999999999999996 999999999999999999999
Q ss_pred HHhcCCeEEEccC---CCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc----CccEEEEecCcchHHHHHHhhCCc
Q psy2417 159 AYCYSMIIVALYD---TLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR----CLKKIISIREVRMATMQRARSRAI 231 (391)
Q Consensus 159 ~~~~G~~~vpl~~---~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~----~l~~ii~~~~~~~~~~~~~~~~~~ 231 (391)
|+++|+++||+++ .++.+++.+++++++++++|++... ...+.+.... ....++.++...
T Consensus 102 ~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 102 ALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSA-VDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTT-HHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhH-HHHHHHHHhccccccccceeEecccc------------
Confidence 9999999999999 8889999999999999999999863 3333332221 111333332211
Q ss_pred eEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCC------CCEEEE
Q psy2417 232 EIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKY------SDVLIS 305 (391)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~------~d~~l~ 305 (391)
. ............+++++||+|||||||.||||+++|+++++.+......+. +.. +|++++
T Consensus 169 ---------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~---~~~~~~~~~~d~~l~ 235 (480)
T 3t5a_A 169 ---------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYF---ADTDGIPPPNSALVS 235 (480)
T ss_dssp ---------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHC---TTTTTCCCTTEEEEE
T ss_pred ---------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhc---cccccCCCCCCeEEE
Confidence 0 001111223456889999999999999999999999999999988888776 666 999999
Q ss_pred cCChHHHHHHHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-----HHhcCchhHH
Q psy2417 306 FLPLAHMLERTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-----MAQIRPSFIK 374 (391)
Q Consensus 306 ~~pl~h~~g~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-----~~~~~~~slr 374 (391)
++|++|++|+... +.+|+.|+++++.+. ++..+++.++++++| +..+|+++..++... ....++++||
T Consensus 236 ~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr 314 (480)
T 3t5a_A 236 WLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNIL 314 (480)
T ss_dssp CCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCC
T ss_pred eCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhh
Confidence 9999999998765 899999999999863 889999999999999 889999988887642 2345678999
Q ss_pred HHHHHHHHHH
Q psy2417 375 RLMFNMAMGS 384 (391)
Q Consensus 375 ~~~~gga~~~ 384 (391)
.+++||+...
T Consensus 315 ~i~~gG~~l~ 324 (480)
T 3t5a_A 315 TILSGSERVQ 324 (480)
T ss_dssp EEEECCTTCC
T ss_pred eeeecCCcCC
Confidence 9999987653
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=337.39 Aligned_cols=268 Identities=18% Similarity=0.194 Sum_probs=220.5
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
.|+.++|+++++++||++|+.+.+ +++||+||+++++++|++|.++|+++|++|+|+++|+++|++++|||+++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~ 74 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRD------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKA 74 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHCCCceEEEeCC------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 378999999999999999999877 79999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHh
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERV 242 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (391)
|+++||+++.++.+++.++++++++++++++....... . . ..++..+ .+.++...
T Consensus 75 G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~----~--~-~~~~~~~------------------~~~~~~~~ 129 (512)
T 3fce_A 75 GHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD----L--P-VRIVSED------------------NLKDIFFT 129 (512)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC----C--S-SEEEETH------------------HHHHHHHH
T ss_pred CCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc----c--c-cceechh------------------hhhhhccc
Confidence 99999999999999999999999999999986531110 0 0 0111111 01111111
Q ss_pred hhc-cCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHH
Q psy2417 243 GAQ-KMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM 321 (391)
Q Consensus 243 ~~~-~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~ 321 (391)
... .........++++++|+|||||||.||||+++|+++.+.+......++ +.++|++++++|++|++++...+.+
T Consensus 130 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~~~~~~~~~ 206 (512)
T 3fce_A 130 HKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN---LQTGQVFLNQAPFSFDLSVMDIYPS 206 (512)
T ss_dssp TTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTT---CCSSCEEEECSCTTSGGGHHHHHHH
T ss_pred ccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcC---CCCCCEEEEeCCccHhHHHHHHHHH
Confidence 111 111223457899999999999999999999999999999998888887 8999999999999999999888999
Q ss_pred HHhCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Q psy2417 322 FLVGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 322 L~~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~ 384 (391)
++.|+++++.+. ++..+++.++++++|++.++|+++..++... ....+++++|.+++||+...
T Consensus 207 l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~ 274 (512)
T 3fce_A 207 LVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLP 274 (512)
T ss_dssp HHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCC
T ss_pred HhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCC
Confidence 999999999874 8899999999999999999999999987653 34456778998888887653
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=340.66 Aligned_cols=265 Identities=18% Similarity=0.168 Sum_probs=218.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 80 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
+...+++++|+++++++||++|+.+.+ +.+||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~ 145 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHEA------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAV 145 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECCC------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 345799999999999999999999876 79999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHH
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEI 239 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (391)
+++|+++||++|.++.+++.+++++++++++|++... . .... ....++..+...
T Consensus 146 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~-~----~~~~-~~~~~~~~~~~~-------------------- 199 (570)
T 4gr5_A 146 LKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPL-S----GRLT-GTTTLYVEDEAA-------------------- 199 (570)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTT-T----TSSC-SSEEEECCC-----------------------
T ss_pred HHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchh-h----hccc-CCcceeeecccc--------------------
Confidence 9999999999999999999999999999999998752 1 1111 222222211100
Q ss_pred HHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHH
Q psy2417 240 ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCES 319 (391)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 319 (391)
.............++|+++|+|||||||.||||+++|+++.+.... ...++ +.++|++++++|++|+.+....+
T Consensus 200 --~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~---~~~~d~~l~~~p~~~~~~~~~~~ 273 (570)
T 4gr5_A 200 --SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAG---FGPDEVFLQCSPVSWDAFGLELF 273 (570)
T ss_dssp ------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSC---CSTTCEEEECSCTTSSTHHHHHH
T ss_pred --ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcC---CCCCCEEEEecCccHHHHHHHHH
Confidence 0011111223457899999999999999999999999999876544 22333 88999999999999988888889
Q ss_pred HHHHhCcEEEEeCC---CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy2417 320 AMFLVGGSIGYYSG---DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 320 ~~L~~G~~vv~~~~---~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~ 384 (391)
.+|+.|+++++.+. ++..+++.|+++++|++.++|++++.|.+... .++++||.+++||+...
T Consensus 274 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~lr~~~~gG~~l~ 339 (570)
T 4gr5_A 274 GALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP--EAFEGVRYAITGGEPAS 339 (570)
T ss_dssp HHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG--GGGTTCSEEEEESSCCC
T ss_pred HHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch--hhCCCceEEEEecccCC
Confidence 99999999999763 89999999999999999999999999987532 34678888888887543
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-41 Score=336.42 Aligned_cols=267 Identities=19% Similarity=0.211 Sum_probs=216.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 80 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
+...++.++|+++++++||++|+.+.+ +++||+||+++++++|++|.++|+++|++|+|+++|+++|++++|||
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 109 (563)
T 1amu_A 36 PRDKTIHQLFEEQVSKRPNNVAIVCEN------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAV 109 (563)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHCCCCeEEEeCC------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 445689999999999999999999866 79999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHH
Q psy2417 160 YCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEI 239 (391)
Q Consensus 160 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (391)
+++|+++||+++.++.+++.+++++++++++|++.. ......... ....++.++... +
T Consensus 110 ~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~--~~~~~~~~~-~~~~~~~~~~~~-------------------~ 167 (563)
T 1amu_A 110 LKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKH--LVHLIHNIQ-FNGQVEIFEEDT-------------------I 167 (563)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGG--GHHHHTTSC-CCSEEEECCCST-------------------T
T ss_pred HHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCc--hhhhhhhcc-ccCceeeecchh-------------------h
Confidence 999999999999999999999999999999999875 222222221 111233332210 0
Q ss_pred HHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHH
Q psy2417 240 ERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCES 319 (391)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 319 (391)
. .........+..++|+++|+|||||||.||||+++|+++.+.+......++ +.++|++++++|++|++++...+
T Consensus 168 ~--~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~~~~~~~ 242 (563)
T 1amu_A 168 K--IREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLN---VTEKDRIGQFASISFDASVWEMF 242 (563)
T ss_dssp T--TSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSC---CCTTCEEEECSCTTSTHHHHHHH
T ss_pred c--cccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcC---CCCCCEEEEeCCccHHHHHHHHH
Confidence 0 000111123456789999999999999999999999999998888777777 89999999999999999998889
Q ss_pred HHHHhCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy2417 320 AMFLVGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 320 ~~L~~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~ 384 (391)
.+|+.|+++++.+. ++..+++.+.++++|++.++|+++..+.. .++++||.+++||+...
T Consensus 243 ~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~-----~~~~~lr~~~~gG~~l~ 306 (563)
T 1amu_A 243 MALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP-----ERILSIQTLITAGSATS 306 (563)
T ss_dssp HHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT-----TTCCSCSEEEEESSCCC
T ss_pred HHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh-----cccccccEEEEEEecCC
Confidence 99999999999764 88999999999999999999999987753 24567888888877543
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-41 Score=357.79 Aligned_cols=296 Identities=21% Similarity=0.270 Sum_probs=235.8
Q ss_pred eccCCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHH
Q psy2417 77 TLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITE 156 (391)
Q Consensus 77 ~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~ 156 (391)
.+.+...|++++|+++++++||++|+++.+. .+++||+||+++++++|++|+++|+++|++|+|+++|+++|++++
T Consensus 55 ~~~p~~~tl~~~l~~~a~~~pd~~Al~~~~~----~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~ 130 (979)
T 3tsy_A 55 IYIPNHLSLHDYIFQNISEFATKPCLINGPT----GHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSF 130 (979)
T ss_dssp CCCCTTSCHHHHHTTTGGGTTTSEEEEETTT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCeEEEECCC----CcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHH
Confidence 4455678999999999999999999998531 178999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeH
Q psy2417 157 QGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236 (391)
Q Consensus 157 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (391)
|||+++|+++||++|.++.+++.+++++++++++|++... ...+..........++.++..... ........+
T Consensus 131 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 203 (979)
T 3tsy_A 131 LAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARY-VDKIKPLQNDDGVVIVCIDDNESV------PIPEGCLRF 203 (979)
T ss_dssp HHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTT-TTTSHHHHHTSCCEEEECCCCTTS------CCCTTEEEG
T ss_pred HHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHH-HHHHHHHhhcCCceEEEeCCcccc------cCCcccccH
Confidence 9999999999999999999999999999999999998763 222222111112234555432110 011124455
Q ss_pred HHHHHhhhc--cCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCC-CCCCCCEEEEcCChHHHH
Q psy2417 237 DEIERVGAQ--KMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDH-RPKYSDVLISFLPLAHML 313 (391)
Q Consensus 237 ~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~ 313 (391)
+++...... .........++|++||+|||||||.||||+++|+++++.+.......... .+.++|++++.+|++|++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 283 (979)
T 3tsy_A 204 TELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY 283 (979)
T ss_dssp GGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHH
T ss_pred HHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHH
Confidence 554332221 11123446789999999999999999999999999999887665432111 278899999999999999
Q ss_pred HHHHH-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Q psy2417 314 ERTCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 314 g~~~~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~ 383 (391)
++... +.+|..|+++++.+. ++..+++.++++++|++.++|+++..+.+.. ....++++||.+++||++.
T Consensus 284 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l 356 (979)
T 3tsy_A 284 ALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPL 356 (979)
T ss_dssp HHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCC
T ss_pred HHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCC
Confidence 99765 789999999999876 9999999999999999999999999998763 4556788999999888764
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-41 Score=334.30 Aligned_cols=284 Identities=15% Similarity=0.159 Sum_probs=227.8
Q ss_pred CCCHHH-HHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 82 VKTLYD-AFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 82 ~~tl~~-~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
..|+.+ ++.++++++ |++|+++.+. .+.+||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||+
T Consensus 24 ~~~l~~~~l~~~~~~~-~~~A~~~~~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~ 98 (548)
T 2d1s_A 24 SAGTQLRKYMERYAKL-GAIAFTNAVT----GVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGL 98 (548)
T ss_dssp CHHHHHHHHHHHHHHH-TCEEEEETTT----CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHH
T ss_pred cCcHHHHHHHhhhccc-CCceEEEcCC----CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Confidence 358999 899999999 9999987321 1789999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEEeHHH
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEIIRFDE 238 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
++|+++||+++.++.+++.+++++++++++|++... ...+...... ....++.++.... ...+..|++
T Consensus 99 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 168 (548)
T 2d1s_A 99 FIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKG-LDKVITVQKTVTTIKTIVILDSKVD---------YRGYQCLDT 168 (548)
T ss_dssp HHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTT-HHHHHHHHHHSTTCCEEEETTCSSC---------BTTBCBHHH
T ss_pred hhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHH-HHHHHHHhcCCCCCCEEEEeCCccc---------ccccccHHH
Confidence 999999999999999999999999999999999863 3333221111 2455666654210 001234666
Q ss_pred HHHhhhccCCCCCCCC-----C-CCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHh---hcCCCCCCCCEEEEcCCh
Q psy2417 239 IERVGAQKMFEEVPPK-----P-TDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQ---LSDHRPKYSDVLISFLPL 309 (391)
Q Consensus 239 l~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~~~~d~~l~~~pl 309 (391)
+...+........... + +++++|+|||||||.||||+++|+++.+.+...... ++ +.++|++++++|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~---~~~~d~~l~~~p~ 245 (548)
T 2d1s_A 169 FIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQ---VSPGTAVLTVVPF 245 (548)
T ss_dssp HHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCC---CCTTCEEEECSCT
T ss_pred HHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccC---CCccceEEEeccH
Confidence 6544321101111111 3 899999999999999999999999999988777665 44 7889999999999
Q ss_pred HHHHHHHHH-HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Q psy2417 310 AHMLERTCE-SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 310 ~h~~g~~~~-~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~ 384 (391)
+|++++... +.++ .|+++++.+. ++..+++.|+++++|+++++|++++.|.+.. ....++++||.+++||+...
T Consensus 246 ~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~ 322 (548)
T 2d1s_A 246 HHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLS 322 (548)
T ss_dssp TSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCC
T ss_pred HHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCC
Confidence 999999875 5666 9999999875 9999999999999999999999999998763 34457789999998887654
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=330.86 Aligned_cols=284 Identities=13% Similarity=0.151 Sum_probs=227.9
Q ss_pred CCHHHHHHHHHHh-----cCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEEccCCHHHHHHH
Q psy2417 83 KTLYDAFRKGAKE-----SNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGL-GVNPGSFVGIYSQNCPEWIITE 156 (391)
Q Consensus 83 ~tl~~~l~~~~~~-----~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~~s~e~i~~~ 156 (391)
.++.++|+++++. +||++|+.+.+. ++..+++||+||+++++++|++|+++ |+++|++|+|+++|+++|++++
T Consensus 38 ~~~~~~l~~~a~~~~a~~~p~~~al~~~~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~ 116 (570)
T 3c5e_A 38 NFASDVLDHWADMEKAGKRPPSPALWWVNG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVI 116 (570)
T ss_dssp CHHHHTHHHHHHHHHTTSSCCCEEEEEECS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHH
T ss_pred cHHHHHHHHHHhhccccCCCCceEEEEEcC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHH
Confidence 4568999999999 999999998542 12247899999999999999999999 9999999999999999999999
Q ss_pred HHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc--CccEEEEecCcchHHHHHHhhCCceEE
Q psy2417 157 QGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR--CLKKIISIREVRMATMQRARSRAIEII 234 (391)
Q Consensus 157 lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (391)
|||+++|+++||+++.++.+++.+++++++++++|++... ...+...... .++.++.++.... ..+.
T Consensus 117 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 185 (570)
T 3c5e_A 117 LGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEV-IQEVDTVASECPSLRIKLLVSEKSC----------DGWL 185 (570)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTT-HHHHHHHGGGCTTCCEEEEESSSCC----------TTSE
T ss_pred HHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHH-HHHHHHHhhcCCceeEEEEecccCc----------cccc
Confidence 9999999999999999999999999999999999998763 3333222111 4556666654211 0134
Q ss_pred eHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHH--HHHHHHHhhcCCCCCCCCEEEEcCChHHH
Q psy2417 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIA--AISAALLQLSDHRPKYSDVLISFLPLAHM 312 (391)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~--~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 312 (391)
.++++....... .......++++++|+|||||||.||||+++|+ ++. ..... ..++ +.++|++++.+|++|+
T Consensus 186 ~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~---~~~~d~~~~~~p~~~~ 259 (570)
T 3c5e_A 186 NFKKLLNEASTT-HHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTG---LQASDIMWTISDTGWI 259 (570)
T ss_dssp EHHHHHHHSCSC-CCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTS---CCTTCEEEECCCTTSH
T ss_pred cHHHHhhccccc-ccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcC---CCCCceEEEcCchHHH
Confidence 566665433221 12234568999999999999999999999999 544 33333 4455 8899999999999999
Q ss_pred HHHHHH-HHHHHhCcEEEEeC---CCHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy2417 313 LERTCE-SAMFLVGGSIGYYS---GDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 313 ~g~~~~-~~~L~~G~~vv~~~---~~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~ 384 (391)
+++... +.+|..|+++++.+ .++..+++.|+++++|+++++|++++.+.+......++++||.+++||+...
T Consensus 260 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l~ 335 (570)
T 3c5e_A 260 LNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLL 335 (570)
T ss_dssp HHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCCC
T ss_pred HHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCcCC
Confidence 999854 89999999999985 3899999999999999999999999999875333446778888888887653
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=328.60 Aligned_cols=266 Identities=17% Similarity=0.181 Sum_probs=221.2
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.++|+++++++||++|+.+.+ +.+||+||+++++++|++|.++|+++|++|+|+++|+++|++++|||++
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~ 76 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCLG------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTK 76 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecCC------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 4589999999999999999999877 7899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIER 241 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (391)
+|+++||+++.++.+++.+++++++++++|++.+.. .. .. ++.+..+.++..
T Consensus 77 ~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~--~~---~~-----------------------~~~~~~~~~~~~ 128 (521)
T 3l8c_A 77 SGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFP--LT---IE-----------------------GISLVSLSEIES 128 (521)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCC--SC---CT-----------------------TSEEEEHHHHHH
T ss_pred hCCEEEecCccccHHHHHHHHHhCCCCEEEecCccc--cc---cc-----------------------cCcccchhhhhh
Confidence 999999999999999999999999999999987521 00 00 122344444433
Q ss_pred hhhcc--CCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHh--hcCCCCCCCCEEEEcCChHHHHHHHH
Q psy2417 242 VGAQK--MFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQ--LSDHRPKYSDVLISFLPLAHMLERTC 317 (391)
Q Consensus 242 ~~~~~--~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~~~~d~~l~~~pl~h~~g~~~ 317 (391)
..... ........++++++|+|||||||.||||+++|+++.+.+...... +. +..++++++..|++|++++..
T Consensus 129 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~ 205 (521)
T 3l8c_A 129 AKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFD---VPKQPQMLAQPPYSFDLSVMY 205 (521)
T ss_dssp HHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTC---CCSSCEEECCSCTTSGGGHHH
T ss_pred cccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccC---CCCCCeEEecCCccHHHHHHH
Confidence 22211 112234578999999999999999999999999999988776665 44 788999999999999999988
Q ss_pred HHHHHHhCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Q psy2417 318 ESAMFLVGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 318 ~~~~L~~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~ 384 (391)
.+.++..|+++++.+. ++..+++.+.++++|++.++|+++..+.... ....++++||.+++||+...
T Consensus 206 ~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~ 277 (521)
T 3l8c_A 206 WAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELT 277 (521)
T ss_dssp HHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCC
T ss_pred HHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCC
Confidence 8999999999998764 8899999999999999999999999887652 23455678888888887543
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=329.70 Aligned_cols=283 Identities=16% Similarity=0.141 Sum_probs=214.8
Q ss_pred CHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcC
Q psy2417 84 TLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYS 163 (391)
Q Consensus 84 tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G 163 (391)
|+.++|+++++++||++|+.+.+ +++||+||+++++++|++|+++ +|++|+|+++|+++|++++|||+++|
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~G 72 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDGQ------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLAN 72 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECSS------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhcCCceEEEeCC------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 56789999999999999999876 7999999999999999999987 89999999999999999999999999
Q ss_pred CeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcc-cCccEEEEecCcchHHHHHHhhCCceEE-eHHHHHH
Q psy2417 164 MIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAP-RCLKKIISIREVRMATMQRARSRAIEII-RFDEIER 241 (391)
Q Consensus 164 ~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~-~~l~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 241 (391)
+++||+++.++.+++.+++++++++++|++.... ........ ..++.+.......... ......... ..+....
T Consensus 73 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 148 (501)
T 3ipl_A 73 IEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLE-LRGFQIVSLDDIEFAGRDITTNGLL---DNTMGIQYDTSNETVVP 148 (501)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCC-CTTSEEEETTC----------------------------------
T ss_pred CEEEecCccCCHHHHHHHHHhcCCCEEEEccccc-cccccccccccceeeeeeccccccc---ccccccccccchhhccc
Confidence 9999999999999999999999999999987631 11100000 0111111100000000 000000000 0011111
Q ss_pred hhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHH
Q psy2417 242 VGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM 321 (391)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~ 321 (391)
.............+++++||+|||||||.||||+++|+++.+.+......++ +.++|++++.+|++|++|+...+.+
T Consensus 149 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~g~~~~~~~ 225 (501)
T 3ipl_A 149 KESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLG---FDRDTNWLSVLPIYHISGLSVLLRA 225 (501)
T ss_dssp -CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTC---CCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred cCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhC---CCccCEEEEeCcHHHHHHHHHHHHH
Confidence 1111111123457899999999999999999999999999999998888887 8999999999999999999988999
Q ss_pred HHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy2417 322 FLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 322 L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~ 384 (391)
++.|+++++.+. ++..+++.++++++|+++++|++++.|.+.... ...+||.+++||+...
T Consensus 226 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~lr~i~~gG~~l~ 287 (501)
T 3ipl_A 226 VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH--EPYNLQKILLGGAKLS 287 (501)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC--SCTTCCEEEECSSCCC
T ss_pred HHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC--CcCcccEEEEeCCCCC
Confidence 999999999876 999999999999999999999999999876321 1127777777776543
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=332.85 Aligned_cols=282 Identities=18% Similarity=0.177 Sum_probs=226.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHH
Q psy2417 80 DDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGA 159 (391)
Q Consensus 80 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~ 159 (391)
....|+.++|+++++++||++|+.+.+ ++..+++||+||+++++++|++|+++|+++|++|+|+++|++++++++|||
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~--~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~ 85 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLN--KELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGC 85 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEE--TTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEc--CCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHH
Confidence 345799999999999999999999865 222489999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEccCCC---CHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeH
Q psy2417 160 YCYSMIIVALYDTL---GPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236 (391)
Q Consensus 160 ~~~G~~~vpl~~~~---~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (391)
+++|+++||++|.+ +.+++.++++++++++++++... ...+..........+ ..+.++..
T Consensus 86 ~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~----------------~~~~~~~~ 148 (590)
T 3kxw_A 86 LYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADH-IKKFTADELNTNPKF----------------LKIPAIAL 148 (590)
T ss_dssp HHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHH-HHHHCC-----CCEE----------------TTEEEEEG
T ss_pred HHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHH-HHHHHHhhhhhcccc----------------cccceeec
Confidence 99999999999998 45789999999999999998752 222211110000000 00111122
Q ss_pred HHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHH
Q psy2417 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERT 316 (391)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 316 (391)
+++.... .....+....+++++||+|||||||.||||+++|+++++.+......++ +.++|++++++|++|++|+.
T Consensus 149 ~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~h~~g~~ 224 (590)
T 3kxw_A 149 ESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFH---MNDETIIFSWLPPHHDMGLI 224 (590)
T ss_dssp GGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTT---CCTTCEEEECSCTTSHHHHH
T ss_pred hhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhC---CCCcCeEEEecCCCcchhhH
Confidence 1111111 1111234567899999999999999999999999999999999888888 99999999999999999998
Q ss_pred H-HHHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH----HHhcCchhHHHHHHHHHHHH
Q psy2417 317 C-ESAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV----MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 317 ~-~~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~----~~~~~~~slr~~~~gga~~~ 384 (391)
. .+.+++.|+++++.+. ++..+++.|+++++|++.++|.++..+.+.. ....++++||.+++||++..
T Consensus 225 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~ 302 (590)
T 3kxw_A 225 GCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVR 302 (590)
T ss_dssp TTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCC
T ss_pred HHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCC
Confidence 8 4899999999999764 7899999999999999999999999988752 23456788998888887653
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=329.28 Aligned_cols=272 Identities=19% Similarity=0.264 Sum_probs=217.9
Q ss_pred HHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhcCCeE
Q psy2417 87 DAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMII 166 (391)
Q Consensus 87 ~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~G~~~ 166 (391)
++|++.++++|+++++...... .+++||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||+++|+++
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~---~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 80 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAA---GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVY 80 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETT---CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHhCCCCceEEEecCC---CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 5788999999999999864321 1689999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHHHHHhcCccEEEEcCCcc--hhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHhhh
Q psy2417 167 VALYDTLGPDACAFIINQAEISVLIVDDDSK--CNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGA 244 (391)
Q Consensus 167 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (391)
||++|.++.+++.+++++++++++|++.... ...+..... ..++.++..... .+.+... ..
T Consensus 81 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------------~~~~~~~-~~ 143 (503)
T 4fuq_A 81 LPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG---ATVETLGPDGRG-------------SLTDAAA-GA 143 (503)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT---CEEEECCTTSCS-------------HHHHHHH-TS
T ss_pred EecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC---ceEEEecCCccc-------------ccchhhh-cC
Confidence 9999999999999999999999999987521 122222111 134444332110 1111111 11
Q ss_pred ccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-HHHHH
Q psy2417 245 QKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE-SAMFL 323 (391)
Q Consensus 245 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~-~~~L~ 323 (391)
..........++|++||+|||||||.||||+++|+++.+.+......++ +.++|++++.+|++|++|+... +.+++
T Consensus 144 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 220 (503)
T 4fuq_A 144 SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWR---FTPDDVLIHALPIYHTHGLFVASNVTLF 220 (503)
T ss_dssp CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTT---CCTTCEEEECSCSSSHCCCCCCHHHHHH
T ss_pred CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhC---CCCCCEEEEeCChHHHHHHHHHHHHHHH
Confidence 1112233457899999999999999999999999999999999888888 9999999999999999997654 78999
Q ss_pred hCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHH
Q psy2417 324 VGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 324 ~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~ 383 (391)
.|+++++.+. ++..+++.++ ++|+++++|+++..+++... ...+++++|.+++||+..
T Consensus 221 ~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l 280 (503)
T 4fuq_A 221 ARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPL 280 (503)
T ss_dssp TTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCC
T ss_pred hCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCC
Confidence 9999999876 9999999998 89999999999999987632 344567888888888754
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=329.20 Aligned_cols=283 Identities=18% Similarity=0.150 Sum_probs=215.4
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..++.++|+++++ +||++|+++.+ +.+||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||++
T Consensus 23 ~~~~~~~l~~~~~-~p~~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 95 (529)
T 2v7b_A 23 FNFAAYLFRLNET-RAGKTAYIDDT------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALY 95 (529)
T ss_dssp CCHHHHHHHHTGG-GTTSEEEECSS------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHH
T ss_pred eeHHHHHHHhhhc-cCCceEEEeCC------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 3468999999999 99999998765 6899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcc--cCc-cEEEEecCcchHHHHHHhhCCceEEeHHH
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAP--RCL-KKIISIREVRMATMQRARSRAIEIIRFDE 238 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~--~~l-~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (391)
+|+++||+++.++.+++.+++++++++++|++... ...+..... ..+ ..++.++..... ......+++
T Consensus 96 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 166 (529)
T 2v7b_A 96 AGVVPVVANTLLTPADYVYMLTHSHARAVIASGAL-VQNVTQALESAEHDGCQLIVSQPRESE--------PRLAPLFEE 166 (529)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGG-HHHHHHHHHCC---CCEEEEECC--------------CCCBHHH
T ss_pred cCceEEecCcccCHHHHHHHHhccCCeEEEechhh-hhHHHHHHhhccccCceEEEecccccc--------cccccchhh
Confidence 99999999999999999999999999999998753 222222211 123 445554432110 001124556
Q ss_pred HHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHH-HHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHH
Q psy2417 239 IERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNV-IAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTC 317 (391)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 317 (391)
+...... ........++|++||+|||||||.||||+++|+++ .+........++ +.++|++++.+|++|++++..
T Consensus 167 ~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~---~~~~d~~~~~~p~~~~~g~~~ 242 (529)
T 2v7b_A 167 LIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILG---IAENDVVFSAAKLFFAYGLGN 242 (529)
T ss_dssp HHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCC---CCTTCEEEESSCTTSHHHHHH
T ss_pred hhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccC---CCCCcEEEEeecHHHHHHHHH
Confidence 5542221 11223457899999999999999999999999999 555444333444 789999999999999999987
Q ss_pred H-HHHHHhCcEEEEeC-C-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcCchhHHHHHHHHHHHH
Q psy2417 318 E-SAMFLVGGSIGYYS-G-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 318 ~-~~~L~~G~~vv~~~-~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~~~slr~~~~gga~~~ 384 (391)
. +.+|..|+++++.+ . ++..+++.+.++++|+++++|+++..+++... ......++|.+++||+...
T Consensus 243 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~ 313 (529)
T 2v7b_A 243 GLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALP 313 (529)
T ss_dssp HTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCC
T ss_pred HHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCC
Confidence 6 78999999999873 3 89999999999999999999999999876422 1111126777777776543
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=312.98 Aligned_cols=283 Identities=14% Similarity=0.056 Sum_probs=214.9
Q ss_pred eccCCCCCHHHHHHHHHHhcCCCceEEEeecC----CCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHH
Q psy2417 77 TLYDDVKTLYDAFRKGAKESNNGRCLGWRQNI----SRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEW 152 (391)
Q Consensus 77 ~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~----~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~ 152 (391)
..+....|+.++|+++++++||++|+.+.+.. +...+.+||+||+++++++|++|.+.|+ +|++|+|+++|+++|
T Consensus 14 ~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 14 AQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp ----CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred eeecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence 34456679999999999999999999986520 1124789999999999999999999999 799999999999999
Q ss_pred HHHHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCce
Q psy2417 153 IITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIE 232 (391)
Q Consensus 153 i~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (391)
++++|||+++|+++||+++.++.+++.+++++++++++|++... ...+ ... ....++..+..
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~--~~~-~~~~~~~~~~~-------------- 154 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNN-FDGV--ELP-PETKVLDTKNQ-------------- 154 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTT-TTTC--CCC-TTCEEEETTCH--------------
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccc-cccc--ccC-ccceeecccch--------------
Confidence 99999999999999999999999999999999999999998753 1111 001 11122221110
Q ss_pred EEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhc-----CCCCCCCCEEEEcC
Q psy2417 233 IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLS-----DHRPKYSDVLISFL 307 (391)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~-----~~~~~~~d~~l~~~ 307 (391)
.+.+...... .........++++++|+|||||||.||||+++|+++.+.+......+. ...+...+++++..
T Consensus 155 --~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (562)
T 3ite_A 155 --SFIENLSTQD-TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLA 231 (562)
T ss_dssp --HHHHHHHHSC-CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCS
T ss_pred --hhhhhccccc-ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEec
Confidence 1111111111 111123345788999999999999999999999999988776554321 00267889999999
Q ss_pred ChHHHHHHHHHHHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q psy2417 308 PLAHMLERTCESAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 308 pl~h~~g~~~~~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~ 384 (391)
|++|++++...+.++..|+++++.+. .+..+.+.++++++|++.++|++++.+.. ...++++||.+++||+...
T Consensus 232 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~---~~~~~~~lr~~~~gG~~l~ 307 (562)
T 3ite_A 232 SRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL---VPEDAPHLVYLGVGGEKMT 307 (562)
T ss_dssp CTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC---CGGGSTTCCEEEEESSCCC
T ss_pred CchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc---CccccCceEEEEEecCCCC
Confidence 99999999888999999999998764 46788999999999999999998876632 2346678888888887653
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=314.56 Aligned_cols=257 Identities=18% Similarity=0.216 Sum_probs=208.2
Q ss_pred CCCHHHHHHHHHHhcCC-CceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHH
Q psy2417 82 VKTLYDAFRKGAKESNN-GRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAY 160 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd-~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~ 160 (391)
..++.++|+++++++|+ ++|+.+.+ +.+||+||+++++++|.+|. .|++|+|+++|++++++++|||+
T Consensus 21 ~~tl~~~l~~~a~~~p~d~~Al~~~~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~ 89 (505)
T 3nyq_A 21 MSSLFPALSPAPTGAPADRPALRFGE------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAAL 89 (505)
T ss_dssp ---CCTTTSSCCCSGGGGSEEEEETT------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhCCCCCeEEEECC------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHH
Confidence 45788889989988887 99999876 89999999999999999885 37899999999999999999999
Q ss_pred hcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHH
Q psy2417 161 CYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIE 240 (391)
Q Consensus 161 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (391)
++|+++||++|.++.+++.+++++++++++|++.......... .+..+ .++..
T Consensus 90 ~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~----~~~~~-~~~~~---------------------- 142 (505)
T 3nyq_A 90 LAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALG----ALERV-DVDVR---------------------- 142 (505)
T ss_dssp HHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGT----TSEEE-ECCTT----------------------
T ss_pred HhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhc----ccccc-ccccc----------------------
Confidence 9999999999999999999999999999999987532221111 22221 11110
Q ss_pred HhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH-H
Q psy2417 241 RVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE-S 319 (391)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~-~ 319 (391)
...........+++++||+|||||||.||||+++|+++.+.+......++ +.++|++++.+|++|.+|+... +
T Consensus 143 ---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~g~~~~~~ 216 (505)
T 3nyq_A 143 ---ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ---WTGEDVLVQGLPLFHVHGLVLGIL 216 (505)
T ss_dssp ---CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHT---CCTTCEEEECCCTTSHHHHTTTTH
T ss_pred ---cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhC---CCCCcEEEEeccHHHHHHHHHHHH
Confidence 00111223457899999999999999999999999999999999888888 9999999999999999998765 8
Q ss_pred HHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH----HHhcCchhHHHHHHHHHHH
Q psy2417 320 AMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV----MAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 320 ~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~----~~~~~~~slr~~~~gga~~ 383 (391)
.+|..|+++++.+. ++..+++.+ ++++|+++++|+++..+.+.. ....+++++|.+++||+..
T Consensus 217 ~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l 284 (505)
T 3nyq_A 217 GPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAAL 284 (505)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCC
T ss_pred HHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCC
Confidence 99999999999865 899999999 889999999999999998742 2233455677777777554
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.3e-23 Score=193.00 Aligned_cols=127 Identities=13% Similarity=0.068 Sum_probs=113.0
Q ss_pred CCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCCC
Q psy2417 255 PTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSGD 334 (391)
Q Consensus 255 ~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~~ 334 (391)
.+++|||+|||||||.||||++||+++++++......++ ++++|++++++|++|++|+...+.+++.|+++++.+..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~---~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~ 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALS---LGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTT---CCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhC---CCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc
Confidence 478999999999999999999999999999999988888 99999999999999999999889999999999997652
Q ss_pred HHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q psy2417 335 IKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 335 ~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~~k 385 (391)
..+++.++++++|++.++|+++..+++......++++||.+++||+...+
T Consensus 113 -~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~l~~ 162 (358)
T 4gs5_A 113 -ANPLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAPVNH 162 (358)
T ss_dssp -SCTTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSCCCH
T ss_pred -ccHHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccCCCc
Confidence 23467789999999999999999998876566678899999999986543
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-18 Score=168.14 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=107.7
Q ss_pred CCC-CCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHh---hcCCCCCCCCEEEEcCChHHHHHHHH-HHHHHHhCcE
Q psy2417 253 PKP-TDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQ---LSDHRPKYSDVLISFLPLAHMLERTC-ESAMFLVGGS 327 (391)
Q Consensus 253 ~~~-~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~L~~G~~ 327 (391)
..+ +++++|+|||||||.||||+++|+++.+........ ++ +.++|++++.+|++|..+... .+.++..|++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVG---IRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTT---CCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcC---CCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 345 889999999999999999999999998876665433 35 889999999999976555554 4889999999
Q ss_pred EEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcC--chhHHHHHHHHHHHH
Q psy2417 328 IGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIR--PSFIKRLMFNMAMGS 384 (391)
Q Consensus 328 vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~--~~slr~~~~gga~~~ 384 (391)
+++.+. ++..+++.|++++||+++++|+++..|++... ...+ +++||.+++||+...
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~ 219 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHT 219 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCC
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCC
Confidence 998765 89999999999999999999999999998744 3333 678999999887653
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-18 Score=165.16 Aligned_cols=130 Identities=14% Similarity=0.136 Sum_probs=109.3
Q ss_pred CCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHH---hhcCCCCCCCCEEEEcCCh-HHHHHHHHHHHHHHhCcE
Q psy2417 252 PPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALL---QLSDHRPKYSDVLISFLPL-AHMLERTCESAMFLVGGS 327 (391)
Q Consensus 252 ~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~~~d~~l~~~pl-~h~~g~~~~~~~L~~G~~ 327 (391)
...++++++|+|||||||.||||+++|+++......... .++ +.++|++++.+|+ .|..++...+.++..|++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~ 162 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAG---ARRGDKVHVSYGYGLFTGGLGAHYGAERAGLT 162 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTT---CCTTCEEEECSCCSSSHHHHHHHHHHHHTTCE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcC---CCCCCEEEEcccccccccchHHHHHHHHcCCE
Confidence 346789999999999999999999999999877654433 455 8899999999999 688888777899999999
Q ss_pred EEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcC--chhHHHHHHHHHHHH
Q psy2417 328 IGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIR--PSFIKRLMFNMAMGS 384 (391)
Q Consensus 328 vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~--~~slr~~~~gga~~~ 384 (391)
+++.+. ++..+++.|++++||+++++|+++..|++... ...+ ++++|.+++||+...
T Consensus 163 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~ 223 (437)
T 2y27_A 163 VIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWT 223 (437)
T ss_dssp EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCC
T ss_pred EEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCC
Confidence 998765 99999999999999999999999999988744 3333 368888888887653
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-18 Score=165.17 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=104.1
Q ss_pred CCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCCh-HHHHHHHHHHHHHHhCcEEEEe
Q psy2417 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPL-AHMLERTCESAMFLVGGSIGYY 331 (391)
Q Consensus 253 ~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~~~~L~~G~~vv~~ 331 (391)
..++++++|+|||||||.||||+++|+++.+........+....+.++|++++.+|+ +|++|+...+.++..|+.++..
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 367889999999999999999999999999988755433322227889999999999 9999999888889999944433
Q ss_pred CCCHH-----------------------hHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Q psy2417 332 SGDIK-----------------------NLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 332 ~~~~~-----------------------~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~ 384 (391)
+.+|. .+++.|+++++|++.++|+++..|++.. ....++++||.+++||+...
T Consensus 168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~ 244 (369)
T 3hgu_A 168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELN 244 (369)
T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCC
T ss_pred cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCC
Confidence 33676 7888999999999999999999998763 23355678888888886543
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-18 Score=164.79 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=108.6
Q ss_pred CCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHH---hhcCCCCCCCCEEEEcCCh-HHHHHHHHHHHHHHhCcEE
Q psy2417 253 PKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALL---QLSDHRPKYSDVLISFLPL-AHMLERTCESAMFLVGGSI 328 (391)
Q Consensus 253 ~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~~~d~~l~~~pl-~h~~g~~~~~~~L~~G~~v 328 (391)
..++++++|+|||||||.||||+++|+++......... .++ +.++|++++.+|+ .|..++...+.++..|+++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~---~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAG---GRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV 165 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTT---CCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcC---CCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence 46789999999999999999999999999876654443 455 8899999999999 5777777778999999999
Q ss_pred EEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH-HhcC--chhHHHHHHHHHHHH
Q psy2417 329 GYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQIR--PSFIKRLMFNMAMGS 384 (391)
Q Consensus 329 v~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~-~~~~--~~slr~~~~gga~~~ 384 (391)
++.+. ++..+++.|++++||+++++|+++..|++... ...+ +++||.+++||+...
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~ 225 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWT 225 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCC
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCC
Confidence 98765 99999999999999999999999999988743 3333 368888888887653
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=2 Score=40.31 Aligned_cols=121 Identities=12% Similarity=0.011 Sum_probs=85.6
Q ss_pred cCCCceEEEeec--CCCC-ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCC--HHHHHHHHHHHhcCCeEEEcc
Q psy2417 96 SNNGRCLGWRQN--ISRP-YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNC--PEWIITEQGAYCYSMIIVALY 170 (391)
Q Consensus 96 ~pd~~al~~~~~--~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s--~e~i~~~lA~~~~G~~~vpl~ 170 (391)
.++.++.+.... .+.+ ...+|.+.+...+..++..+...|+.+++++..+.+-+ ...+...++.+..|+..+++.
T Consensus 88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 88 PQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp CGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred ChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 445666554332 2333 46689999998888888888889999999999888853 344456788889999988766
Q ss_pred CCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhc--------ccCccEEEEecCc
Q psy2417 171 DTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRA--------PRCLKKIISIREV 218 (391)
Q Consensus 171 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~--------~~~l~~ii~~~~~ 218 (391)
. ..++.+...+++.++.++++.... +..+.+.. ..+++.+++-+..
T Consensus 168 ~-~~~~~~~~~i~~~~~t~l~~~Ps~-~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 221 (437)
T 2y27_A 168 G-GQTEKQVQLIQDFRPDIIMVTPSY-MLSIADEIERQGLDPVQSSLRIGIFGAEP 221 (437)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHHH-HHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred C-CCHHHHHHHHHHhCCCEEEECHHH-HHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence 5 478999999999999999887642 33333321 1267777776544
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=90.88 E-value=2.3 Score=40.03 Aligned_cols=121 Identities=14% Similarity=0.038 Sum_probs=85.3
Q ss_pred cCCCceEEEee--cCCCC-ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCC--HHHHHHHHHHHhcCCeEEEcc
Q psy2417 96 SNNGRCLGWRQ--NISRP-YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNC--PEWIITEQGAYCYSMIIVALY 170 (391)
Q Consensus 96 ~pd~~al~~~~--~~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s--~e~i~~~lA~~~~G~~~vpl~ 170 (391)
.++.++.+... ..+.+ ...+|.+.+...+..++..+...|+.+++++..+.+-+ ...+...++.+..|+..+++.
T Consensus 90 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 169 (443)
T 2y4o_A 90 PREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMS 169 (443)
T ss_dssp CGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCC
T ss_pred ChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECC
Confidence 34566644433 22333 45689999998888888888889999999999888853 344556788888999988776
Q ss_pred CCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhc--------ccCccEEEEecCc
Q psy2417 171 DTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRA--------PRCLKKIISIREV 218 (391)
Q Consensus 171 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~--------~~~l~~ii~~~~~ 218 (391)
.. ..+++...+++.++.++++.... +..+.+.. ..+++.+++-+..
T Consensus 170 ~~-~~~~~~~~i~~~~~t~l~~~Ps~-~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 223 (443)
T 2y4o_A 170 GG-QTEKQVQLIRDFEPKIILVTPSY-MLNLIDEMVRQGMDPAESSLKIGIFGAEP 223 (443)
T ss_dssp SC-CHHHHHHHHHHHCCSEEEECHHH-HHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CC-CHHHHHHHHHHhCCcEEEECHHH-HHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence 54 78899999999999999887652 33333221 1267777776554
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=88.08 E-value=2.7 Score=39.43 Aligned_cols=119 Identities=11% Similarity=-0.049 Sum_probs=85.2
Q ss_pred CCceEEEeec--CCCC-ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCC--HHHHHHHHHHHhcCCeEEEccCC
Q psy2417 98 NGRCLGWRQN--ISRP-YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNC--PEWIITEQGAYCYSMIIVALYDT 172 (391)
Q Consensus 98 d~~al~~~~~--~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s--~e~i~~~lA~~~~G~~~vpl~~~ 172 (391)
+.++.+.... .+.+ ...+|.+.+...+..++..+...|+.+++++..+.+-+ ...+..+++.+..|+..++.++
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~- 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA- 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-
Confidence 5556554432 2333 46789999999999999989889999999999988743 4445567888999998887765
Q ss_pred CCHHHHHHHHHhcCccEEEEcCCcchhHHHhhc--------ccCccEEEEecCc
Q psy2417 173 LGPDACAFIINQAEISVLIVDDDSKCNQIIDRA--------PRCLKKIISIREV 218 (391)
Q Consensus 173 ~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~--------~~~l~~ii~~~~~ 218 (391)
..++.+...+++.++.+++..... +..+.+.. ..+++.+++-+..
T Consensus 165 ~~~~~~~~~i~~~~~t~~~~~P~~-~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 165 GNSKRQIKFISDFKTTALHAIPSY-AIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHH-HHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred CCHHHHHHHHHHHCCCEEEECHHH-HHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 467889999999999998887652 33333321 1157777776554
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=83.99 E-value=18 Score=34.30 Aligned_cols=118 Identities=8% Similarity=-0.031 Sum_probs=81.5
Q ss_pred cCCCceEEEeec--CCCC-ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCH-HHHHHHHHHHhcCCeEEEccC
Q psy2417 96 SNNGRCLGWRQN--ISRP-YQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCP-EWIITEQGAYCYSMIIVALYD 171 (391)
Q Consensus 96 ~pd~~al~~~~~--~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~-e~i~~~lA~~~~G~~~vpl~~ 171 (391)
.++.+|++.... .+.+ ...+|.+.+...+..+... .++.+++++..++|-.. -.+..+++.+..|+..+..+
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 467777666543 2233 4678999888776665544 57889999998888543 33344677888898887765
Q ss_pred CCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhccc---CccEEEEecCc
Q psy2417 172 TLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPR---CLKKIISIREV 218 (391)
Q Consensus 172 ~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~---~l~~ii~~~~~ 218 (391)
.+.++.+...+++.++..+.+.... +..+.+.... +++.+++-+..
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~-~~~l~~~~~~~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQT-LNWLMQQGLHEPYNLQKILLGGAK 285 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHH-HHHHHHHTCCSCTTCCEEEECSSC
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHH-HHHHHhcCCCCcCcccEEEEeCCC
Confidence 4789999999999999999887652 4444443322 57777765543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 391 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 4e-41 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 7e-32 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 7e-31 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 3e-23 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 4e-22 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 9e-21 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 3e-18 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 151 bits (382), Expect = 4e-41
Identities = 51/312 (16%), Positives = 103/312 (33%), Gaps = 15/312 (4%)
Query: 86 YDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIY 145
+ + +E+ + + W + + + I Y + F + LL LG+ G V IY
Sbjct: 75 ANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIY 134
Query: 146 SQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRA 205
PE + + ++ P+A A I + ++I D+
Sbjct: 135 MPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPL 194
Query: 206 PRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPP-------KPTDL 258
+ + + V R I + E + + + E+ P D
Sbjct: 195 KKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDP 254
Query: 259 CTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE 318
I YTSG+TG PKGV+ T G + + + D+ P D+ + + +
Sbjct: 255 LFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP--GDIYWCTADVGWVTGHSYL 312
Query: 319 -SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSF 372
G + + G + + + + I+ P + + + I +
Sbjct: 313 LYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD 372
Query: 373 IKRLMFNMAMGS 384
L ++G
Sbjct: 373 RSSLRILGSVGE 384
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 124 bits (311), Expect = 7e-32
Identities = 64/310 (20%), Positives = 102/310 (32%), Gaps = 23/310 (7%)
Query: 74 FLSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLG 133
F ST+ D+ L+D + A + Y + RAR GL
Sbjct: 2 FPSTMMDEELNLWDFLERAAALFGRKEVVSRLHT--GEVHRTTYAEVYQRARRLMGGLRA 59
Query: 134 LGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVD 193
LGV G V N + ++ L P A+I+N AE VL+ D
Sbjct: 60 LGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFD 119
Query: 194 DD--SKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEV 251
+ I ++ + + + E + V
Sbjct: 120 PNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEE---------------ADPV 164
Query: 252 PPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAH 311
C + YT+GTTG PKGV+ +H ++ S A + DV++ +P+ H
Sbjct: 165 RVPERAACGMAYTTGTTGLPKGVVYSHRALVLH-SLAASLVDGTALSEKDVVLPVVPMFH 223
Query: 312 MLERTCESAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM-AQI 368
+ A LVG D +L E T VP + + D +
Sbjct: 224 VNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH 283
Query: 369 RPSFIKRLMF 378
R ++RL+
Sbjct: 284 RLKTLRRLVV 293
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 121 bits (305), Expect = 7e-31
Identities = 55/312 (17%), Positives = 100/312 (32%), Gaps = 15/312 (4%)
Query: 86 YDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLL-GLGVNPGSFVGI 144
Y+ + A ++ N + + + + I Y + L L +GV G V +
Sbjct: 62 YNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAV 121
Query: 145 YSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDS-KCNQIID 203
Y PE IIT I ++ ++ IN + V+I D+S + ++I+
Sbjct: 122 YMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIE 181
Query: 204 RAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEI-----ERVGAQKMFEEVPPKPTDL 258
+ VR + R + E+ + + P D
Sbjct: 182 TKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDP 241
Query: 259 CTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE 318
+ YTSG+TG PKGV + + + D DV + + + T
Sbjct: 242 LFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQ--EDVFFTAGDIGWITGHTYV 299
Query: 319 SAMFLVGGSIGYYSG------DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSF 372
L+ G + + + K T P L + + I
Sbjct: 300 VYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHS 359
Query: 373 IKRLMFNMAMGS 384
+K L ++G
Sbjct: 360 LKSLRCLGSVGE 371
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 98.8 bits (245), Expect = 3e-23
Identities = 39/255 (15%), Positives = 78/255 (30%), Gaps = 3/255 (1%)
Query: 117 YNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPD 176
Y + + + G+N + + S+N ++ + GA + + D
Sbjct: 50 YAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNER 109
Query: 177 ACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRF 236
+N ++ +V+ V I + L I I + T + +
Sbjct: 110 ELLNSMNISQPTVVFVSKKGLQK--ILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTS 167
Query: 237 DEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHR 296
E + + I +SG+TG PKGV L H S A + ++
Sbjct: 168 HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQ 227
Query: 297 PKYSDVLISFLPLAHMLERTCESAMFLVGGS-IGYYSGDIKNLTEDMKTLKPTIMPAVPR 355
++S +P H + G + Y + + ++ K VP
Sbjct: 228 IIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPT 287
Query: 356 LLNRMYDKVMAQIRP 370
L + +
Sbjct: 288 LFSFFAKSTLIDKYD 302
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 95.9 bits (237), Expect = 4e-22
Identities = 44/302 (14%), Positives = 96/302 (31%), Gaps = 28/302 (9%)
Query: 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSF 141
++T+ + R+ A + + L + + + R + L G+ P
Sbjct: 1 MQTVNEMLRRAATRAPDHCALAVPAR----GLRLTHAELRARVEAVAARLHADGLRPQQR 56
Query: 142 VGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQI 201
V + + N + +I + + L L A +I + E++ ++ +
Sbjct: 57 VAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116
Query: 202 IDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTI 261
I ++ + I VR E E+ +P I
Sbjct: 117 IFQSGSGARIIFLGDLVRDG------------------EPYSYGPPIEDPQREPAQPAFI 158
Query: 262 CYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM 321
YTSGTTG PK ++ + + Q+ ++ +V++ +PL H++
Sbjct: 159 FYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRH-NVVLGLMPLYHVVGFFAVLVA 217
Query: 322 FLVGGSI-----GYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRL 376
L + D L + + P L + ++ ++ +
Sbjct: 218 ALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHV 277
Query: 377 MF 378
F
Sbjct: 278 TF 279
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 91.5 bits (226), Expect = 9e-21
Identities = 50/309 (16%), Positives = 93/309 (30%), Gaps = 34/309 (11%)
Query: 79 YDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNP 138
Y KT++ F + + N + + + Y++ ++A + G+
Sbjct: 19 YPRDKTIHQLFEEQVSKRPNNVAIVCEN------EQLTYHELNVKANQLARIFIEKGIGK 72
Query: 139 GSFVGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKC 198
+ VGI + + I V + + +I++ ++ +L+
Sbjct: 73 DTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKH--- 129
Query: 199 NQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDL 258
+ + ++ F+E + VP K TDL
Sbjct: 130 ---------------------LVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDL 168
Query: 259 CTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE 318
+ YTSGTTGNPKG ML H + + D + F ++
Sbjct: 169 AYVIYTSGTTGNPKGTMLEHKGISNLKVF---FENSLNVTEKDRIGQFASISFDASVWEM 225
Query: 319 SAMFLVGGSIGYYSGDIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMF 378
L G S+ D N + V L + R I+ L+
Sbjct: 226 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH-LDPERILSIQTLIT 284
Query: 379 NMAMGSKEN 387
+ S
Sbjct: 285 AGSATSPSL 293
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 84.3 bits (207), Expect = 3e-18
Identities = 37/250 (14%), Positives = 79/250 (31%), Gaps = 19/250 (7%)
Query: 83 KTLYDAFRKGAKESNNGRCL-GWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSF 141
+T D R A + + + + S Y + RA +G LG+
Sbjct: 25 ETFGDLLRDRAAKYGDRIAITCGNTHWS-------YRELDTRADRLAAGFQKLGIQQKDR 77
Query: 142 VGIYSQNCPEWIITEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQI 201
V + N E+ + + V + + AE + I+ D
Sbjct: 78 VVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDY 137
Query: 202 IDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTI 261
A + K+ +++ + +A E F +E + + + K +D+ +
Sbjct: 138 RSLARQVQSKLPTLKNIIVAG---------EAEEFLPLEDLHTEP-VKLPEVKSSDVAFL 187
Query: 262 CYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAM 321
+ G+TG K + TH + I +++ + + + L +
Sbjct: 188 QLSGGSTGLSKLIPRTHDDYI-YSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGV 246
Query: 322 FLVGGSIGYY 331
GG +
Sbjct: 247 LYAGGRVVLS 256
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 391 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 86.63 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 84.99 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 83.29 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 83.12 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=3.4e-42 Score=347.13 Aligned_cols=301 Identities=16% Similarity=0.211 Sum_probs=235.3
Q ss_pred eccCCCCCH-HHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHH
Q psy2417 77 TLYDDVKTL-YDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIIT 155 (391)
Q Consensus 77 ~~~~~~~tl-~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~ 155 (391)
|+.....++ ..+++++++.+||++|+++.+...++.+++||+||.++++++|++|+++|+++||+|+|+++|+++++++
T Consensus 65 wf~~~~~N~~~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~ 144 (643)
T d1pg4a_ 65 WYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVA 144 (643)
T ss_dssp ESTTCEECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHH
T ss_pred eCCCChhhHHHHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHH
Confidence 333333444 4678788899999999998764445678999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCc--------chhHHHhhcc----cCccEEEEecCcchHHH
Q psy2417 156 EQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDS--------KCNQIIDRAP----RCLKKIISIREVRMATM 223 (391)
Q Consensus 156 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~--------~~~~~~~~~~----~~l~~ii~~~~~~~~~~ 223 (391)
+|||+++|++++|+++.++++++.+++++++++++|+++.. ....+..... ..++.++.++......
T Consensus 145 ~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~- 223 (643)
T d1pg4a_ 145 MLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI- 223 (643)
T ss_dssp HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC-
T ss_pred HHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccc-
Confidence 99999999999999999999999999999999999997641 0111111111 1567777776532110
Q ss_pred HHHhhCCceEEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHH-HHhhcCCCCCCCCE
Q psy2417 224 QRARSRAIEIIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAA-LLQLSDHRPKYSDV 302 (391)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~-~~~~~~~~~~~~d~ 302 (391)
.........+.+.... ......+....++|+++|+|||||||.||||+++|++++...... ...+. +.++|+
T Consensus 224 ---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~---~~~~d~ 296 (643)
T d1pg4a_ 224 ---DWQEGRDLWWRDLIEK-ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFD---YHPGDI 296 (643)
T ss_dssp ---CCCBTTEEEHHHHHTT-SCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTT---CCTTCE
T ss_pred ---ccccccchhhhhhhcc-cCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhC---CCCCCE
Confidence 0001122334443332 222223344578999999999999999999999999987665444 44556 889999
Q ss_pred EEEcCChHHHHHHHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH---HHhcCchhH
Q psy2417 303 LISFLPLAHMLERTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV---MAQIRPSFI 373 (391)
Q Consensus 303 ~l~~~pl~h~~g~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~---~~~~~~~sl 373 (391)
+++.+|++|++++... +.+|+.|++++++++ ++..+++.+++++||++.++|++++.|++.. ....++++|
T Consensus 297 ~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sL 376 (643)
T d1pg4a_ 297 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSL 376 (643)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTC
T ss_pred EEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCce
Confidence 9999999999999876 789999999999753 7889999999999999999999999998763 235578899
Q ss_pred HHHHHHHHHHHH
Q psy2417 374 KRLMFNMAMGSK 385 (391)
Q Consensus 374 r~~~~gga~~~k 385 (391)
|.+++||++...
T Consensus 377 r~i~~~G~pl~~ 388 (643)
T d1pg4a_ 377 RILGSVGEPINP 388 (643)
T ss_dssp CEEEEESSCCCH
T ss_pred EEEEEEeCCCCH
Confidence 999999886543
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.9e-41 Score=338.64 Aligned_cols=295 Identities=17% Similarity=0.210 Sum_probs=228.5
Q ss_pred CHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHH-hCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 84 TLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLL-GLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 84 tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
..+.+|+++++++||++|+++.+..++..+++||+||.++++++|++|+ ++|+++||+|+|+++|++++++++|||+++
T Consensus 60 ~~~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~ 139 (640)
T d1ry2a_ 60 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 139 (640)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccC
Confidence 3478899999999999999987654556789999999999999999997 689999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc-------hhHHHh-hccc--CccEEEEecCcchHHHHHHhhCCce
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK-------CNQIID-RAPR--CLKKIISIREVRMATMQRARSRAIE 232 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-------~~~~~~-~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (391)
|++++|+++.++++++.++++++++++++++.... ...... .... .++....+....... .......
T Consensus 140 Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 216 (640)
T d1ry2a_ 140 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---VAFHAPR 216 (640)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---CCCCSSS
T ss_pred ceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccc---ccccccc
Confidence 99999999999999999999999999999986521 111221 1111 334444433221100 0000111
Q ss_pred EEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHH-hhcCCCCCCCCEEEEcCChHH
Q psy2417 233 IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALL-QLSDHRPKYSDVLISFLPLAH 311 (391)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~-~~~~~~~~~~d~~l~~~pl~h 311 (391)
...+..... .........+..++|+++|+|||||||.||||+++|++++........ .+. +.++|++++.+|++|
T Consensus 217 ~~~~~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~---~~~~d~~l~~~pl~~ 292 (640)
T d1ry2a_ 217 DLDWATEKK-KYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFD---THQEDVFFTAGDIGW 292 (640)
T ss_dssp EEEHHHHHT-TSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSC---CCSSCEEEECSCTTS
T ss_pred ccccccccc-ccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcC---CCcccceeeccchhh
Confidence 222222221 112222334456899999999999999999999999998887655554 445 889999999999999
Q ss_pred HHHHHHH-HHHHHhCcEEEEeCC-----CHHhHHHHHHhcCCcEEecChHHHHHHHHHH---HHhcCchhHHHHHHHHHH
Q psy2417 312 MLERTCE-SAMFLVGGSIGYYSG-----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV---MAQIRPSFIKRLMFNMAM 382 (391)
Q Consensus 312 ~~g~~~~-~~~L~~G~~vv~~~~-----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~---~~~~~~~slr~~~~gga~ 382 (391)
++|+... +.+|+.|+++++.+. ++..+++.|+++++|++.++|++++.|.+.. ....++++||.+++||++
T Consensus 293 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~ 372 (640)
T d1ry2a_ 293 ITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEP 372 (640)
T ss_dssp HHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSC
T ss_pred hhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEeccc
Confidence 9998766 789999999998753 7889999999999999999999999987652 245678899999999986
Q ss_pred HHH
Q psy2417 383 GSK 385 (391)
Q Consensus 383 ~~k 385 (391)
...
T Consensus 373 l~~ 375 (640)
T d1ry2a_ 373 IAA 375 (640)
T ss_dssp CCH
T ss_pred CcH
Confidence 543
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.1e-39 Score=322.18 Aligned_cols=293 Identities=22% Similarity=0.260 Sum_probs=235.3
Q ss_pred ceeccCCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHH
Q psy2417 75 LSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWII 154 (391)
Q Consensus 75 ~~~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~ 154 (391)
+.+..+...||+++|++.++++||++|+++.+ +++.+++||+||+++++++|++|.++|+++|++|+|+++|+++|++
T Consensus 3 p~~~~~~~~~l~~~l~~~a~~~pd~~av~~~~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~ 80 (534)
T d1v25a_ 3 PSTMMDEELNLWDFLERAAALFGRKEVVSRLH--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLE 80 (534)
T ss_dssp BCCBCCCCCCTHHHHHHHHHHSTTCEEEEECT--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred CCccCCCCCCHHHHHHHHHHHcCCCeEEEEec--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHH
Confidence 34445566789999999999999999999876 4556789999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcc--hhHHHhhcccCccEEEEecCcchHHHHHHhhCCce
Q psy2417 155 TEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSK--CNQIIDRAPRCLKKIISIREVRMATMQRARSRAIE 232 (391)
Q Consensus 155 ~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (391)
++|||+++|++++|++|.++.+++.++|+.+++++++++.... ...+....+ .++.++........ .
T Consensus 81 ~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~ 149 (534)
T d1v25a_ 81 AYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK-TVQHFVVMDEKAPE----------G 149 (534)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCS-SCCEEEESSSCCCT----------T
T ss_pred HHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhccc-ccceeEEeeccccc----------c
Confidence 9999999999999999999999999999999999999988631 112222222 55555555442211 0
Q ss_pred EEeHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHH
Q psy2417 233 IIRFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHM 312 (391)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 312 (391)
..... .............++++++|+|||||||.||||+++|.+++........... ..+..+|++++.+|++|.
T Consensus 150 ~~~~~----~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~-~~~~~~d~~~~~~p~~~~ 224 (534)
T d1v25a_ 150 YLAYE----EALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDG-TALSEKDVVLPVVPMFHV 224 (534)
T ss_dssp CEEHH----HHCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTT-TCCCTTCEEEECSCTTSH
T ss_pred ccccc----ccccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcc-cccccccccccccchhhh
Confidence 11111 1111122334567889999999999999999999999999876544433322 126789999999999999
Q ss_pred HHHHHHHHHHHhCcEEEEeCC--CHHhHHHHHHhcCCcEEecChHHHHHHHHH-HHHhcCchhHHHHHHHHHHHHH
Q psy2417 313 LERTCESAMFLVGGSIGYYSG--DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK-VMAQIRPSFIKRLMFNMAMGSK 385 (391)
Q Consensus 313 ~g~~~~~~~L~~G~~vv~~~~--~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~-~~~~~~~~slr~~~~gga~~~k 385 (391)
+++...+..+..|+++++... ++..+...+.++++|++.++|.++..+.+. .....++++||.+++||+...+
T Consensus 225 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~ 300 (534)
T d1v25a_ 225 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPR 300 (534)
T ss_dssp HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCH
T ss_pred ccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCH
Confidence 999999888888888887654 899999999999999999999999999887 4466688899999999887543
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.9e-38 Score=312.96 Aligned_cols=277 Identities=19% Similarity=0.202 Sum_probs=222.2
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHh
Q psy2417 82 VKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYC 161 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~ 161 (391)
..|++++|+++++++||++|+.+.+ +.+||+||+++++++|++|.++|+++|++|+|+++|+++|++++|||++
T Consensus 24 ~~tl~~~l~~~a~~~pd~~Al~~~~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~ 97 (536)
T d1mdba_ 24 GETFGDLLRDRAAKYGDRIAITCGN------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFR 97 (536)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCeEEEECC------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence 3699999999999999999999876 7999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcch---hH----HHhhcccCccEEEEecCcchHHHHHHhhCCceEE
Q psy2417 162 YSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKC---NQ----IIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234 (391)
Q Consensus 162 ~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~---~~----~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (391)
+|+++||++|.++.+++.++++++++++++++..... .. ...... .+...+...... ...
T Consensus 98 ~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------------~~~ 164 (536)
T d1mdba_ 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP-TLKNIIVAGEAE------------EFL 164 (536)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCT-TCCCEEEESCCT------------TSE
T ss_pred hCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccc-cccceeeeeccc------------ccc
Confidence 9999999999999999999999999999999865211 00 111111 222222221110 011
Q ss_pred eHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHH
Q psy2417 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLE 314 (391)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 314 (391)
.++++ ...........++|+++|+|||||||.||||++||+++.+.+......+. +.++|++++.+|++|.++
T Consensus 165 ~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~---~~~~d~~l~~~~~~~~~~ 237 (536)
T d1mdba_ 165 PLEDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCW---LDHSTVYLAALPMAHNYP 237 (536)
T ss_dssp EGGGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHT---CCTTCEEEECSCTTSHHH
T ss_pred chhhc----ccCCcCCCccCccchHHhhhcccccccceecccccccccccccccccccc---cccccccccccccccccc
Confidence 22111 11111223457899999999999999999999999999999999888888 999999999999999999
Q ss_pred HHHH--HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Q psy2417 315 RTCE--SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKV-MAQIRPSFIKRLMFNMAMGS 384 (391)
Q Consensus 315 ~~~~--~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~-~~~~~~~slr~~~~gga~~~ 384 (391)
+... +..+..|.+++..+. ++..++..+++++++.+..+|..+..+.... ......+++|.+++||+...
T Consensus 238 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~ 311 (536)
T d1mdba_ 238 LSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFS 311 (536)
T ss_dssp HHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCC
T ss_pred eeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccc
Confidence 8644 344455677766654 8999999999999999999999999988774 44556778888888887543
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=6.7e-37 Score=302.22 Aligned_cols=287 Identities=15% Similarity=0.148 Sum_probs=224.8
Q ss_pred CCCHHHHHHHHHHhc---CCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHH
Q psy2417 82 VKTLYDAFRKGAKES---NNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQG 158 (391)
Q Consensus 82 ~~tl~~~l~~~~~~~---pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA 158 (391)
..|+.+.|.+.++++ |+.+|+.+.+ ..+.+||+||+++++++|.+|+++|+++||+|+|+++|+++|++++||
T Consensus 16 ~~t~~~~l~~~~~~~~~~P~~~a~~d~~----~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA 91 (541)
T d1lcia_ 16 DGTAGEQLHKAMKRYALVPGTIAFTDAH----IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLG 91 (541)
T ss_dssp SSCHHHHHHHHHHHHHTSTTCEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHH
T ss_pred CCCHHHHHHHHHHhhCCCCCeEEEEeCC----CCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 458999999999988 5555665432 236799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHH---HhhcccCccEEEEecCcchHHHHHHhhCCceEEe
Q psy2417 159 AYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQI---IDRAPRCLKKIISIREVRMATMQRARSRAIEIIR 235 (391)
Q Consensus 159 ~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~---~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (391)
|+++|+++||+++.++.+++.++|++++++++|++.+. ...+ ....+ .++.++.++.... ...+..
T Consensus 92 ~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~ 160 (541)
T d1lcia_ 92 ALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKG-LQKILNVQKKLP-IIQKIIIMDSKTD---------YQGFQS 160 (541)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGG-HHHHHHHHHHCT-TCCEEEETTCSSC---------BTTBEE
T ss_pred HHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccc-cccchhcccccc-ccceeeeecCCcc---------ccccch
Confidence 99999999999999999999999999999999999863 3333 33333 6677777765321 112234
Q ss_pred HHHHHHhhhcc------CCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCCh
Q psy2417 236 FDEIERVGAQK------MFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPL 309 (391)
Q Consensus 236 ~~~l~~~~~~~------~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl 309 (391)
+.+........ ..+.....++++++|+|||||||.||||+++|++++..............+..++++++++|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 240 (541)
T d1lcia_ 161 MYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPF 240 (541)
T ss_dssp HHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred hhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccc
Confidence 44433322111 111233457889999999999999999999999999877766655433347789999999999
Q ss_pred HHHHHHHHHHHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHH-HHHhcCchhHHHHHHHHHHH
Q psy2417 310 AHMLERTCESAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDK-VMAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 310 ~h~~g~~~~~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~-~~~~~~~~slr~~~~gga~~ 383 (391)
+|.++....+..+..|+.+++... +.......+..+++|.+.++|.++..+.+. .....+++++|.+++||+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~ 316 (541)
T d1lcia_ 241 HHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPL 316 (541)
T ss_dssp TSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCC
T ss_pred cccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEeccccc
Confidence 999999999888888888887665 888999999999999999999999999877 34556677899888888764
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=8.5e-37 Score=297.81 Aligned_cols=277 Identities=17% Similarity=0.207 Sum_probs=224.5
Q ss_pred CCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHHHHHHHHhc
Q psy2417 83 KTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWIITEQGAYCY 162 (391)
Q Consensus 83 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~~~lA~~~~ 162 (391)
+|++++|+++++++||++|+.+.+. .+++||+||+++++++|++|+++|+++|++|+|+++|+++|++++|||+++
T Consensus 2 ~ti~~~l~~~a~~~pd~~al~~~~~----~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 77 (503)
T d3cw9a1 2 QTVNEMLRRAATRAPDHCALAVPAR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRL 77 (503)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEGGG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCC----CcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 6999999999999999999998653 278999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEEeHHHHHHh
Q psy2417 163 SMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEIIRFDEIERV 242 (391)
Q Consensus 163 G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (391)
|++++|++|.++++++.+++++++++++|++............. ....++. +.++...
T Consensus 78 G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~---------------------~~~~~~~ 135 (503)
T d3cw9a1 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG-SGARIIF---------------------LGDLVRD 135 (503)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTT-CCCEEEE---------------------HHHHEET
T ss_pred CcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhhc-ccccccc---------------------chhhhhh
Confidence 99999999999999999999999999999988632222222111 2233333 2222221
Q ss_pred hhcc----CCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHH
Q psy2417 243 GAQK----MFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCE 318 (391)
Q Consensus 243 ~~~~----~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 318 (391)
+... ........++++++|+|||||||.||+|+++|+++.+.+......+.. .....++++..+|+.|.++....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~ 214 (503)
T d3cw9a1 136 GEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGL-RHGRHNVVLGLMPLYHVVGFFAV 214 (503)
T ss_dssp TEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCC-CSSTTCEEEECSCTTSHHHHHTT
T ss_pred hcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccc-cccccccccccCccccccccccc
Confidence 1111 112234578899999999999999999999999999998887776541 15667899999999988888876
Q ss_pred -HHHHHhCcEEEEeCC-CHHhHHHHHHhcCCcEEecChHHHHHHHHHHH---HhcCchhHHHHHHHHHHHHHH
Q psy2417 319 -SAMFLVGGSIGYYSG-DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVM---AQIRPSFIKRLMFNMAMGSKE 386 (391)
Q Consensus 319 -~~~L~~G~~vv~~~~-~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~---~~~~~~slr~~~~gga~~~k~ 386 (391)
+.+...|+++++.+. ++..+...+.+++++.+..+|..+..+..... .....++||.+++||+...+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~ 287 (503)
T d3cw9a1 215 LVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDA 287 (503)
T ss_dssp HHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHH
T ss_pred cccccccccccccccccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEecccccccc
Confidence 677777777777665 99999999999999999999999998877633 344567899999999876554
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=3.1e-36 Score=295.80 Aligned_cols=271 Identities=18% Similarity=0.192 Sum_probs=218.4
Q ss_pred ceeccCCCCCHHHHHHHHHHhcCCCceEEEeecCCCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEccCCHHHHH
Q psy2417 75 LSTLYDDVKTLYDAFRKGAKESNNGRCLGWRQNISRPYQWIHYNQALLRARNFGSGLLGLGVNPGSFVGIYSQNCPEWII 154 (391)
Q Consensus 75 ~~~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~~s~e~i~ 154 (391)
.+.++|+..||.++|+++|+++||++|+++.+ +++||+||+++++++|.+|+++|+++|++|+|+++|+++|++
T Consensus 15 ~~~~~~~~~tl~~l~~~~a~~~Pd~~Al~~~~------~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~ 88 (514)
T d1amua_ 15 TKAEYPRDKTIHQLFEEQVSKRPNNVAIVCEN------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFI 88 (514)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred CCCCCCCCCcHHHHHHHHHHhCCCCeEEEECC------eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHH
Confidence 34566788999999999999999999999876 899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEEccCCCCHHHHHHHHHhcCccEEEEcCCcchhHHHhhcccCccEEEEecCcchHHHHHHhhCCceEE
Q psy2417 155 TEQGAYCYSMIIVALYDTLGPDACAFIINQAEISVLIVDDDSKCNQIIDRAPRCLKKIISIREVRMATMQRARSRAIEII 234 (391)
Q Consensus 155 ~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (391)
++|||+++|++++|+++.++.+++.+++++++++++|++.. ....+.......... ..+..
T Consensus 89 ~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~--~~~~~~~~~~~~~~~-~~~~~---------------- 149 (514)
T d1amua_ 89 GILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKH--LVHLIHNIQFNGQVE-IFEED---------------- 149 (514)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGG--GHHHHTTSCCCSEEE-ECCCS----------------
T ss_pred HHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehh--hhhhhhhhccccccc-ccccc----------------
Confidence 99999999999999999999999999999999999999885 222222222111111 11110
Q ss_pred eHHHHHHhhhccCCCCCCCCCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHH
Q psy2417 235 RFDEIERVGAQKMFEEVPPKPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLE 314 (391)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 314 (391)
............+..++++++|+|||||||.||||+++|.++..........+. +..+|+++..+|++|.++
T Consensus 150 -----~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~---~~~~d~~l~~~p~~~~~~ 221 (514)
T d1amua_ 150 -----TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLN---VTEKDRIGQFASISFDAS 221 (514)
T ss_dssp -----TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSC---CCTTCEEEECSCTTSTHH
T ss_pred -----cccccccccCCCCCCcccceEEEEccCCCCCccccccccccccccccccccccc---ccccccccceeccccccc
Confidence 001112222334567899999999999999999999999999999999888887 899999999999999999
Q ss_pred HHHHHHHHHhCcEEEEeCC----CHHhHHHHHHhcCCcEEecChHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q psy2417 315 RTCESAMFLVGGSIGYYSG----DIKNLTEDMKTLKPTIMPAVPRLLNRMYDKVMAQIRPSFIKRLMFNMAMG 383 (391)
Q Consensus 315 ~~~~~~~L~~G~~vv~~~~----~~~~l~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~slr~~~~gga~~ 383 (391)
+...+.+++.|+++++... +...+++.+..+.++.+..+|...... ...++.++|.+++||+..
T Consensus 222 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~G~~~ 289 (514)
T d1amua_ 222 VWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL-----DPERILSIQTLITAGSAT 289 (514)
T ss_dssp HHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS-----CTTTCCSCSEEEEESSCC
T ss_pred cccccccccccccccccccccccchhhhhhhhhhhhcccccceeeecccc-----cccccccccEEEEecccC
Confidence 9999999999999998753 677888999999999999999765532 234556777777776654
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=86.63 E-value=0.86 Score=41.59 Aligned_cols=100 Identities=11% Similarity=0.105 Sum_probs=73.1
Q ss_pred eEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC--CHH
Q psy2417 259 CTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG--DIK 336 (391)
Q Consensus 259 a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~--~~~ 336 (391)
+.+.++.+.+| +.+|++.+...+..+...+....+.++|++..+++-+..+ ....++++..|+..+..+. ..+
T Consensus 35 ~~~a~~d~~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~-~v~~lA~~~~G~i~vpl~~~~~~~ 109 (541)
T d1lcia_ 35 GTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDIYNER 109 (541)
T ss_dssp TCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSST-HHHHHHHHHHTCEEEECCTTCCHH
T ss_pred CeEEEEeCCCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCeEEEecCCCCCHH
Confidence 34445555444 4689999988776655544321288999999888865432 2333788999998888765 788
Q ss_pred hHHHHHHhcCCcEEecChHHHHHHHHH
Q psy2417 337 NLTEDMKTLKPTIMPAVPRLLNRMYDK 363 (391)
Q Consensus 337 ~l~~~i~~~~~t~~~~~P~~l~~l~~~ 363 (391)
.+...++..++++++.....+..+.+.
T Consensus 110 ~l~~~l~~~~~~~vi~~~~~~~~~~~~ 136 (541)
T d1lcia_ 110 ELLNSMNISQPTVVFVSKKGLQKILNV 136 (541)
T ss_dssp HHHHHHHHHCCSEEEECGGGHHHHHHH
T ss_pred HHHHHHHhccceEEeeeccccccchhc
Confidence 999999999999999999888776654
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=84.99 E-value=3.2 Score=37.25 Aligned_cols=98 Identities=9% Similarity=0.060 Sum_probs=73.8
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.|+.+|++.- +-.+|.+.+...+......+....+.++|++...++-+..+ +...++++..|+..+..+.
T Consensus 36 ~Pd~~Al~~~---------~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~-v~~~la~~~~G~v~v~l~~ 105 (514)
T d1amua_ 36 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDI 105 (514)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEEC---------CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHH-HHHHHHHHHhCcEEEEeCC
Confidence 5788888741 23699999988877666544222288999999999877654 3344789999999988765
Q ss_pred --CHHhHHHHHHhcCCcEEecChHHHHHHH
Q psy2417 334 --DIKNLTEDMKTLKPTIMPAVPRLLNRMY 361 (391)
Q Consensus 334 --~~~~l~~~i~~~~~t~~~~~P~~l~~l~ 361 (391)
.++.+...++..++..++..+.....+.
T Consensus 106 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~ 135 (514)
T d1amua_ 106 EYPKERIQYILDDSQARMLLTQKHLVHLIH 135 (514)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHHT
T ss_pred CCCHHHHHHHHhccCCcEEEEehhhhhhhh
Confidence 7889999999999999998877665543
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=83.29 E-value=6 Score=35.57 Aligned_cols=103 Identities=11% Similarity=-0.066 Sum_probs=76.4
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.|+.+|++...+|- .-.+|.+.+...+......+...-+.++|++...++-+..+ ....++++..|+..+..+.
T Consensus 24 ~pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~ 97 (534)
T d1v25a_ 24 FGRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTANP 97 (534)
T ss_dssp STTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred cCCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCcEEEecCC
Confidence 46778877666542 23589999988776666554322288999999998876543 3344889999999888765
Q ss_pred --CHHhHHHHHHhcCCcEEecChHHHHHHHH
Q psy2417 334 --DIKNLTEDMKTLKPTIMPAVPRLLNRMYD 362 (391)
Q Consensus 334 --~~~~l~~~i~~~~~t~~~~~P~~l~~l~~ 362 (391)
..+.+...++..++..++........+..
T Consensus 98 ~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~ 128 (534)
T d1v25a_ 98 RLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128 (534)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred CCCHHHHHHHHHhhccccccccchhhhhHHH
Confidence 78899999999999999988877766543
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=83.12 E-value=3.1 Score=39.07 Aligned_cols=97 Identities=11% Similarity=0.066 Sum_probs=70.7
Q ss_pred CCCCceEEEecCCCCCCCcEEEeehhHHHHHHHHHHHhhcCCCCCCCCEEEEcCChHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2417 254 KPTDLCTICYTSGTTGNPKGVMLTHGNVIAAISAALLQLSDHRPKYSDVLISFLPLAHMLERTCESAMFLVGGSIGYYSG 333 (391)
Q Consensus 254 ~~~~~a~i~~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~L~~G~~vv~~~~ 333 (391)
.+|.+|+|... ..+|. ...+|.+.+...+..+...+....+.++|++..++|-+..+ ....++++..|+..+.+..
T Consensus 85 ~~d~~Ali~~~-~~~~~--~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~-iv~~lA~~~~Gav~v~l~~ 160 (643)
T d1pg4a_ 85 NGDRTAIIWEG-DDTSQ--SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFG 160 (643)
T ss_dssp HTTSEEEEEEC-SSTTC--EEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEe-cCCCC--ceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHH-HHHHHHHHHhCeEEEecCC
Confidence 46778886543 23333 34689999988776665544221288999999999976654 3344788999999887765
Q ss_pred --CHHhHHHHHHhcCCcEEecCh
Q psy2417 334 --DIKNLTEDMKTLKPTIMPAVP 354 (391)
Q Consensus 334 --~~~~l~~~i~~~~~t~~~~~P 354 (391)
.++.+...+.+.++.+++...
T Consensus 161 ~~~~~~l~~~l~~~~~~~li~~~ 183 (643)
T d1pg4a_ 161 GFSPEAVAGCIIDSSSRLVITAD 183 (643)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCHHHHHHHHHhcCCCEEEEcc
Confidence 889999999999999988654
|