Psyllid ID: psy2442

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MYRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP
Secondary Structure (PSIPRED)
cEEEEEEccccEEEEccccEEEcccccEEEEEEEcEEcccEEEEEEccEEcccccccEEEEEEcccccEEEEcccccccccEEEEEEEEEccccEEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccEEEEccccEEEEcccEEEEEEEEEcccccEEEEEEccEEcccccccEEEEEccccccEEEEEcccccccccEEEEEEEccccEEEEEEEEEEEEcccccc
Coil and Loop (DISEMBL)
myrkvrfldppeitlrprnqavkaggitsfyciargdpipviqwrkngkrvsgtqsrymvqefppggsllriepvrhardDAVYECVAENGVGDAVSAEASLtvyegeekp
Flexible Loop (DISEMBL)
myrkvrfldppeitlrprnqavkagGITSFYCIArgdpipviqwrkngkrvsgtqsrymvqefppggslLRIEPVRHARDDAVYECVAENGVGDAVSAEAsltvyegeekp
Low Complexity Region (SEG)
MYRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP
Disordered region (IsUnstruct)
******************NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS**************
Disordered Region (DISOPRED)
MYRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS***********PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG****
Disordered Region (DISEMBL)
MYRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP
Disordered Region (DISPRO)
MYRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
P16621	2029	Tyrosine-protein phosphat	yes	N/A	0.864	0.047	0.715	2e-37
Q64487	1912	Receptor-type tyrosine-pr	no	N/A	0.891	0.051	0.485	2e-18
P23468	1912	Receptor-type tyrosine-pr	no	N/A	0.891	0.051	0.485	2e-18
A4IFW2	1909	Receptor-type tyrosine-pr	no	N/A	0.882	0.051	0.450	1e-16
Q13332	1948	Receptor-type tyrosine-pr	no	N/A	0.900	0.051	0.423	1e-16
P10586	1907	Receptor-type tyrosine-pr	no	N/A	0.828	0.048	0.468	2e-16
A7MBJ4	1898	Receptor-type tyrosine-pr	no	N/A	0.828	0.048	0.468	2e-16
Q64605	1907	Receptor-type tyrosine-pr	no	N/A	0.900	0.052	0.413	3e-16
A2A8L5	1898	Receptor-type tyrosine-pr	no	N/A	0.828	0.048	0.458	4e-16
B0V2N1	1907	Receptor-type tyrosine-pr	no	N/A	0.900	0.052	0.413	5e-16

>sp|P16621|LAR_DROME Tyrosine-protein phosphatase Lar OS=Drosophila melanogaster GN=Lar PE=1 SV=2

 Score =  154 bits (389), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 84/102 (82%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           PPEI  +P+NQ V+ GG+ SFYC ARGDP P I WRKNGK+VSGTQSRY V E P G S+
Sbjct: 35  PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 94

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           LRIEPVR  RDDA YECVAENGVGDAVSA+A+LT+YEG++ P
Sbjct: 95  LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTP 136

Possible cell adhesion receptor. It possesses an intrinsic protein tyrosine phosphatase activity (PTPase). It controls motor axon guidance.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 4EC: 8

>sp|Q64487|PTPRD_MOUSE Receptor-type tyrosine-protein phosphatase delta OS=Mus musculus GN=Ptprd PE=1 SV=3

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 64/103 (62%), Gaps = 4/103 (3%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GS 68
           PP  T  P +Q   +GG+ SF C A GDP P I W K GK+VS    R+ V EF  G GS
Sbjct: 23  PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN--QRFEVIEFDDGSGS 80

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           +LRI+P+R  RD+A+YECVA N VG+ +S    LTV   ++ P
Sbjct: 81  VLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIP 122

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|P23468|PTPRD_HUMAN Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens GN=PTPRD PE=1 SV=2

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 64/103 (62%), Gaps = 4/103 (3%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GS 68
           PP  T  P +Q   +GG+ SF C A GDP P I W K GK+VS    R+ V EF  G GS
Sbjct: 23  PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN--QRFEVIEFDDGSGS 80

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           +LRI+P+R  RD+A+YECVA N VG+ +S    LTV   ++ P
Sbjct: 81  VLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIP 122

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|A4IFW2|PTPRF_DANRE Receptor-type tyrosine-protein phosphatase F OS=Danio rerio GN=ptprf PE=2 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 62/102 (60%), Gaps = 4/102 (3%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GSL 69
           P     P +Q   +GG+ SF C A G+P P I W K GK+VS    R+ V EF  G GS+
Sbjct: 35  PNFVRSPEDQTGISGGVASFVCQAAGEPKPRITWMKKGKKVSS--QRFEVIEFDDGSGSV 92

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           LRI+P+R  RD+A+YEC A N +G+ ++  A LTV E  + P
Sbjct: 93  LRIQPLRTHRDEAIYECTATNSLGE-INTSAKLTVLEENQIP 133

The first PTPase domain has enzymatic activity, while the second one seems to affect the substrate specificity of the first one.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|Q13332|PTPRS_HUMAN Receptor-type tyrosine-protein phosphatase S OS=Homo sapiens GN=PTPRS PE=1 SV=3

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 4/104 (3%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF-PPGG 67
           +PP     P++Q   +GG+ SF C A GDP P + W K GK+V+    R+   EF    G
Sbjct: 31  EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS--QRFETIEFDESAG 88

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           ++LRI+P+R  RD+ VYECVA+N VG+ ++  A LTV   ++ P
Sbjct: 89  AVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLP 131

Interacts with LAR-interacting protein LIP.1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|P10586|PTPRF_HUMAN Receptor-type tyrosine-protein phosphatase F OS=Homo sapiens GN=PTPRF PE=1 SV=2

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 4/96 (4%)

Query: 17  PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GSLLRIEPV 75
           P +Q   +GG+ SF C A G+P P I W K GK+VS    R+ V EF  G GS+LRI+P+
Sbjct: 39  PEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSS--QRFEVIEFDDGAGSVLRIQPL 96

Query: 76  RHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           R  RD+A+YEC A N +G+ ++  A L+V E E+ P
Sbjct: 97  RVQRDEAIYECTATNSLGE-INTSAKLSVLEEEQLP 131

The first PTPase domain has enzymatic activity, while the second one seems to affect the substrate specificity of the first one.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|A7MBJ4|PTPRF_BOVIN Receptor-type tyrosine-protein phosphatase F OS=Bos taurus GN=PTPRF PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 4/96 (4%)

Query: 17  PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GSLLRIEPV 75
           P +Q   +GG+ SF C A G+P P I W K GK+VS    R+ V EF  G GS+LRI+P+
Sbjct: 39  PEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSS--QRFEVIEFDDGAGSVLRIQPL 96

Query: 76  RHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           R  RD+A+YEC A N +G+ ++  A L+V E E+ P
Sbjct: 97  RVQRDEAIYECTATNSLGE-INTSAKLSVLEEEQLP 131

The first PTPase domain has enzymatic activity, while the second one seems to affect the substrate specificity of the first one.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|Q64605|PTPRS_RAT Receptor-type tyrosine-protein phosphatase S OS=Rattus norvegicus GN=Ptprs PE=1 SV=2

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 4/104 (3%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF-PPGG 67
           +PP     P++Q   +GG+ SF C A GDP P + W K GK+V+    R+   +F    G
Sbjct: 31  EPPRFIREPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS--QRFETIDFDESSG 88

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           ++LRI+P+R  RD+ VYECVA+N VG+ ++  A LTV   ++ P
Sbjct: 89  AVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLP 131

Interacts with LAR-interacting protein LIP.1.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|A2A8L5|PTPRF_MOUSE Receptor-type tyrosine-protein phosphatase F OS=Mus musculus GN=Ptprf PE=1 SV=1

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 4/96 (4%)

Query: 17  PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GSLLRIEPV 75
           P +Q   +GG+ SF C A G+P P I W K GK+VS    R+ V EF  G GS+LRI+P+
Sbjct: 39  PEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSS--QRFEVIEFDDGAGSVLRIQPL 96

Query: 76  RHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           R  RD+A+YEC A N +G+ ++  A L+V E ++ P
Sbjct: 97  RVQRDEAIYECTATNSLGE-INTSAKLSVLEEDQLP 131

The first PTPase domain has enzymatic activity, while the second one seems to affect the substrate specificity of the first one.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|B0V2N1|PTPRS_MOUSE Receptor-type tyrosine-protein phosphatase S OS=Mus musculus GN=Ptprs PE=1 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 4/104 (3%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF-PPGG 67
           +PP     P++Q   +GG+ SF C A GDP P + W K GK+V+    R+   +F    G
Sbjct: 31  EPPRFIREPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS--QRFETIDFDESSG 88

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           ++LRI+P+R  RD+ VYECVA+N VG+ ++  A LTV   ++ P
Sbjct: 89  AVLRIQPLRTPRDENVYECVAQNSVGE-ITIHAKLTVLREDQLP 131

Interacts with LAR-interacting protein LIP.1.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
270004034	2156	hypothetical protein TcasGA2_TC003342 [T	0.837	0.043	0.744	7e-38
189235110	2016	PREDICTED: similar to receptor tyrosine	0.873	0.048	0.715	8e-38
386769894	1912	Leukocyte-antigen-related-like, isoform	0.909	0.052	0.682	2e-36
161076965	2011	Leukocyte-antigen-related-like, isoform	0.909	0.050	0.682	2e-36
195118894	2025	GI20182 [Drosophila mojavensis] gi|19391	0.945	0.051	0.675	4e-36
195156693	2029	GL26255 [Drosophila persimilis] gi|19847	0.909	0.049	0.691	6e-36
195385007	2025	GJ13567 [Drosophila virilis] gi|19414765	0.909	0.049	0.691	6e-36
157812	2029	protein tyrosine phosphatase (DLAR) prec	0.864	0.047	0.715	6e-36
442628457	1935	Leukocyte-antigen-related-like, isoform	0.864	0.049	0.715	7e-36
24585307	2029	Leukocyte-antigen-related-like, isoform	0.864	0.047	0.715	7e-36

>gi|270004034|gb|EFA00482.1| hypothetical protein TcasGA2_TC003342 [Tribolium castaneum]

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 73/98 (74%), Positives = 86/98 (87%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
           DPPEIT +PRN  VKAGGI +FYC ARGDP PVIQW+KNGK+VSG+Q+RY V+EFP GGS
Sbjct: 33  DPPEITTKPRNLQVKAGGIAAFYCAARGDPRPVIQWKKNGKKVSGSQTRYQVKEFPDGGS 92

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           +LRIEPV+  RDDA YECVAENGVGDAV+A+A+L V+E
Sbjct: 93  ILRIEPVKAGRDDANYECVAENGVGDAVNADATLVVFE 130

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235110|ref|XP_971078.2| PREDICTED: similar to receptor tyrosine phosphatase type r2a [Tribolium castaneum]

 Score =  160 bits (406), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 88/102 (86%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           PPEIT +PRN  VKAGGI +FYC ARGDP PVIQW+KNGK+VSG+Q+RY V+EFP GGS+
Sbjct: 13  PPEITTKPRNLQVKAGGIAAFYCAARGDPRPVIQWKKNGKKVSGSQTRYQVKEFPDGGSI 72

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           LRIEPV+  RDDA YECVAENGVGDAV+A+A+L V+E ++ P
Sbjct: 73  LRIEPVKAGRDDANYECVAENGVGDAVNADATLVVFETDKLP 114

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386769894|ref|NP_001246094.1| Leukocyte-antigen-related-like, isoform D [Drosophila melanogaster] gi|383291579|gb|AFH03768.1| Leukocyte-antigen-related-like, isoform D [Drosophila melanogaster]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 87/107 (81%)

Query: 5   VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
           +  ++PPEI  +P+NQ V+ GG+ SFYC ARGDP P I WRKNGK+VSGTQSRY V E P
Sbjct: 12  ISHVNPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP 71

Query: 65  PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
            G S+LRIEPVR  RDDA YECVAENGVGDAVSA+A+LT+YEG++ P
Sbjct: 72  GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTP 118

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161076965|ref|NP_724220.2| Leukocyte-antigen-related-like, isoform B [Drosophila melanogaster] gi|157400186|gb|AAN11057.2| Leukocyte-antigen-related-like, isoform B [Drosophila melanogaster]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 87/107 (81%)

Query: 5   VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
           +  ++PPEI  +P+NQ V+ GG+ SFYC ARGDP P I WRKNGK+VSGTQSRY V E P
Sbjct: 12  ISHVNPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP 71

Query: 65  PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
            G S+LRIEPVR  RDDA YECVAENGVGDAVSA+A+LT+YEG++ P
Sbjct: 72  GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTP 118

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195118894|ref|XP_002003967.1| GI20182 [Drosophila mojavensis] gi|193914542|gb|EDW13409.1| GI20182 [Drosophila mojavensis]

 Score =  154 bits (390), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 75/111 (67%), Positives = 87/111 (78%)

Query: 1   MYRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMV 60
           M   V  + PPEI  +P+NQ V+ GG+ SFYC ARGDP P I WRKNGK+VSGTQSRY V
Sbjct: 23  MPATVDAVHPPEIIKKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTV 82

Query: 61  QEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
            E P G S+LRIEPVR  RDDA YECVAENGVGDAVSA+A+LT+YEG++ P
Sbjct: 83  LEQPGGVSILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTP 133

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195156693|ref|XP_002019231.1| GL26255 [Drosophila persimilis] gi|198472125|ref|XP_002133339.1| GA28096 [Drosophila pseudoobscura pseudoobscura] gi|194115384|gb|EDW37427.1| GL26255 [Drosophila persimilis] gi|198139615|gb|EDY70741.1| GA28096 [Drosophila pseudoobscura pseudoobscura]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 86/107 (80%)

Query: 5   VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
           V  + PPEI  +P+NQ V+ GG+ SFYC ARGDP P I WRKNGK+VSGTQSRY V E P
Sbjct: 29  VDAVHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP 88

Query: 65  PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
            G S+LRIEPVR  RDDA YECVAENGVGDAVSA+A+LT+YEG++ P
Sbjct: 89  GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTP 135

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195385007|ref|XP_002051200.1| GJ13567 [Drosophila virilis] gi|194147657|gb|EDW63355.1| GJ13567 [Drosophila virilis]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 86/107 (80%)

Query: 5   VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
           V  + PPEI  +P+NQ V+ GG+ SFYC ARGDP P I WRKNGK+VSGTQSRY V E P
Sbjct: 27  VDAVHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP 86

Query: 65  PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
            G S+LRIEPVR  RDDA YECVAENGVGDAVSA+A+LT+YEG++ P
Sbjct: 87  GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTP 133

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157812|gb|AAA28668.1| protein tyrosine phosphatase (DLAR) precursor [Drosophila melanogaster] gi|1209648|gb|AAC47002.1| protein tyrosine phosphatase DLAR [Drosophila melanogaster]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 84/102 (82%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           PPEI  +P+NQ V+ GG+ SFYC ARGDP P I WRKNGK+VSGTQSRY V E P G S+
Sbjct: 35  PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 94

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           LRIEPVR  RDDA YECVAENGVGDAVSA+A+LT+YEG++ P
Sbjct: 95  LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTP 136

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442628457|ref|NP_001260595.1| Leukocyte-antigen-related-like, isoform G [Drosophila melanogaster] gi|440213955|gb|AGB93130.1| Leukocyte-antigen-related-like, isoform G [Drosophila melanogaster]

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 84/102 (82%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           PPEI  +P+NQ V+ GG+ SFYC ARGDP P I WRKNGK+VSGTQSRY V E P G S+
Sbjct: 35  PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 94

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           LRIEPVR  RDDA YECVAENGVGDAVSA+A+LT+YEG++ P
Sbjct: 95  LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTP 136

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24585307|ref|NP_523604.2| Leukocyte-antigen-related-like, isoform A [Drosophila melanogaster] gi|73920223|sp|P16621.2|LAR_DROME RecName: Full=Tyrosine-protein phosphatase Lar; AltName: Full=Protein-tyrosine-phosphate phosphohydrolase; AltName: Full=dLAR; Flags: Precursor gi|22946866|gb|AAF53837.3| Leukocyte-antigen-related-like, isoform A [Drosophila melanogaster]

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 84/102 (82%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           PPEI  +P+NQ V+ GG+ SFYC ARGDP P I WRKNGK+VSGTQSRY V E P G S+
Sbjct: 35  PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 94

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           LRIEPVR  RDDA YECVAENGVGDAVSA+A+LT+YEG++ P
Sbjct: 95  LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTP 136

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
FB|FBgn0000464	2029	Lar "Leukocyte-antigen-related	0.918	0.050	0.715	1.6e-34
UNIPROTKB|F5GWT7	1502	PTPRD "Receptor-type tyrosine-	0.891	0.065	0.485	3.3e-18
UNIPROTKB|F5GWY7	1502	PTPRD "Receptor-type tyrosine-	0.891	0.065	0.485	3.3e-18
UNIPROTKB|F5GWR7	1505	PTPRD "Receptor-type tyrosine-	0.891	0.065	0.485	3.3e-18
UNIPROTKB|F1NQ49	1911	F1NQ49 "Uncharacterized protei	0.891	0.051	0.485	3.5e-18
UNIPROTKB|F1NQ48	1918	F1NQ48 "Uncharacterized protei	0.891	0.051	0.485	3.5e-18
UNIPROTKB|F1PH17	1890	PTPRD "Uncharacterized protein	0.891	0.052	0.485	4.4e-18
UNIPROTKB|G3XAD5	1890	PTPRD "Receptor-type tyrosine-	0.891	0.052	0.485	4.4e-18
UNIPROTKB|G3XAE2	1899	PTPRD "Receptor-type tyrosine-	0.891	0.052	0.485	4.4e-18
UNIPROTKB|P23468	1912	PTPRD "Receptor-type tyrosine-	0.891	0.051	0.485	4.4e-18

FB|FBgn0000464 Lar "Leukocyte-antigen-related-like" [Drosophila melanogaster (taxid:7227)]

 Score = 390 (142.3 bits), Expect = 1.6e-34, P = 1.6e-34
 Identities = 73/102 (71%), Positives = 84/102 (82%)

Query:    10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
             PPEI  +P+NQ V+ GG+ SFYC ARGDP P I WRKNGK+VSGTQSRY V E P G S+
Sbjct:    35 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 94

Query:    70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
             LRIEPVR  RDDA YECVAENGVGDAVSA+A+LT+YEG++ P
Sbjct:    95 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTP 136

GO:0006470 "protein dephosphorylation" evidence=NAS;IDA

GO:0005001 "transmembrane receptor protein tyrosine phosphatase activity" evidence=ISS

GO:0004725 "protein tyrosine phosphatase activity" evidence=NAS;IDA

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0007411 "axon guidance" evidence=IMP;TAS

GO:0008045 "motor neuron axon guidance" evidence=IGI;NAS;IMP;TAS

GO:0016021 "integral to membrane" evidence=NAS

GO:0001700 "embryonic development via the syncytial blastoderm" evidence=NAS

GO:0048477 "oogenesis" evidence=IMP

GO:0007399 "nervous system development" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0045467 "R7 cell development" evidence=IMP

GO:0008594 "photoreceptor cell morphogenesis" evidence=IMP

GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0048841 "regulation of axon extension involved in axon guidance" evidence=IMP

GO:0048675 "axon extension" evidence=IMP

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IMP

GO:0007412 "axon target recognition" evidence=IMP

GO:0032093 "SAM domain binding" evidence=IPI

GO:0005925 "focal adhesion" evidence=IDA

UNIPROTKB|F5GWT7 PTPRD "Receptor-type tyrosine-protein phosphatase delta" [Homo sapiens (taxid:9606)]

 Score = 235 (87.8 bits), Expect = 3.3e-18, P = 3.3e-18
 Identities = 50/103 (48%), Positives = 64/103 (62%)

Query:    10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GS 68
             PP  T  P +Q   +GG+ SF C A GDP P I W K GK+VS    R+ V EF  G GS
Sbjct:    23 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN--QRFEVIEFDDGSGS 80

Query:    69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
             +LRI+P+R  RD+A+YECVA N VG+ +S    LTV   ++ P
Sbjct:    81 VLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIP 122

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|F5GWY7 PTPRD "Receptor-type tyrosine-protein phosphatase delta" [Homo sapiens (taxid:9606)]

 Score = 235 (87.8 bits), Expect = 3.3e-18, P = 3.3e-18
 Identities = 50/103 (48%), Positives = 64/103 (62%)

Query:    10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GS 68
             PP  T  P +Q   +GG+ SF C A GDP P I W K GK+VS    R+ V EF  G GS
Sbjct:    23 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN--QRFEVIEFDDGSGS 80

Query:    69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
             +LRI+P+R  RD+A+YECVA N VG+ +S    LTV   ++ P
Sbjct:    81 VLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIP 122

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|F5GWR7 PTPRD "Receptor-type tyrosine-protein phosphatase delta" [Homo sapiens (taxid:9606)]

 Score = 235 (87.8 bits), Expect = 3.3e-18, P = 3.3e-18
 Identities = 50/103 (48%), Positives = 64/103 (62%)

Query:    10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GS 68
             PP  T  P +Q   +GG+ SF C A GDP P I W K GK+VS    R+ V EF  G GS
Sbjct:    23 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN--QRFEVIEFDDGSGS 80

Query:    69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
             +LRI+P+R  RD+A+YECVA N VG+ +S    LTV   ++ P
Sbjct:    81 VLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIP 122

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|F1NQ49 F1NQ49 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 236 (88.1 bits), Expect = 3.5e-18, P = 3.5e-18
 Identities = 50/103 (48%), Positives = 65/103 (63%)

Query:    10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GS 68
             PP+ T  P +Q   +GG+ SF C A GDP P I W K GK+VS    R+ V EF  G GS
Sbjct:    24 PPKFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN--QRFEVIEFDDGSGS 81

Query:    69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
             +LRI+P+R  RD+A+YECVA N VG+ +S    LTV   ++ P
Sbjct:    82 VLRIQPLRTPRDEAIYECVASNSVGE-ISVSTRLTVLREDQIP 123

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|F1NQ48 F1NQ48 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 236 (88.1 bits), Expect = 3.5e-18, P = 3.5e-18
 Identities = 50/103 (48%), Positives = 65/103 (63%)

Query:    10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GS 68
             PP+ T  P +Q   +GG+ SF C A GDP P I W K GK+VS    R+ V EF  G GS
Sbjct:    24 PPKFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN--QRFEVIEFDDGSGS 81

Query:    69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
             +LRI+P+R  RD+A+YECVA N VG+ +S    LTV   ++ P
Sbjct:    82 VLRIQPLRTPRDEAIYECVASNSVGE-ISVSTRLTVLREDQIP 123

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|F1PH17 PTPRD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 235 (87.8 bits), Expect = 4.4e-18, P = 4.4e-18
 Identities = 50/103 (48%), Positives = 64/103 (62%)

Query:    10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GS 68
             PP  T  P +Q   +GG+ SF C A GDP P I W K GK+VS    R+ V EF  G GS
Sbjct:    23 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN--QRFEVIEFDDGSGS 80

Query:    69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
             +LRI+P+R  RD+A+YECVA N VG+ +S    LTV   ++ P
Sbjct:    81 VLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIP 122

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|G3XAD5 PTPRD "Receptor-type tyrosine-protein phosphatase delta" [Homo sapiens (taxid:9606)]

 Score = 235 (87.8 bits), Expect = 4.4e-18, P = 4.4e-18
 Identities = 50/103 (48%), Positives = 64/103 (62%)

Query:    10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GS 68
             PP  T  P +Q   +GG+ SF C A GDP P I W K GK+VS    R+ V EF  G GS
Sbjct:    23 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN--QRFEVIEFDDGSGS 80

Query:    69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
             +LRI+P+R  RD+A+YECVA N VG+ +S    LTV   ++ P
Sbjct:    81 VLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIP 122

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|G3XAE2 PTPRD "Receptor-type tyrosine-protein phosphatase delta" [Homo sapiens (taxid:9606)]

 Score = 235 (87.8 bits), Expect = 4.4e-18, P = 4.4e-18
 Identities = 50/103 (48%), Positives = 64/103 (62%)

Query:    10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GS 68
             PP  T  P +Q   +GG+ SF C A GDP P I W K GK+VS    R+ V EF  G GS
Sbjct:    23 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN--QRFEVIEFDDGSGS 80

Query:    69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
             +LRI+P+R  RD+A+YECVA N VG+ +S    LTV   ++ P
Sbjct:    81 VLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIP 122

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|P23468 PTPRD "Receptor-type tyrosine-protein phosphatase delta" [Homo sapiens (taxid:9606)]

 Score = 235 (87.8 bits), Expect = 4.4e-18, P = 4.4e-18
 Identities = 50/103 (48%), Positives = 64/103 (62%)

Query:    10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GS 68
             PP  T  P +Q   +GG+ SF C A GDP P I W K GK+VS    R+ V EF  G GS
Sbjct:    23 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN--QRFEVIEFDDGSGS 80

Query:    69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
             +LRI+P+R  RD+A+YECVA N VG+ +S    LTV   ++ P
Sbjct:    81 VLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIP 122

GO:0005515 "protein binding" evidence=IPI

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0005001 "transmembrane receptor protein tyrosine phosphatase activity" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006796 "phosphate-containing compound metabolic process" evidence=NAS

GO:0007185 "transmembrane receptor protein tyrosine phosphatase signaling pathway" evidence=TAS

GO:0007157 "heterophilic cell-cell adhesion" evidence=ISS

GO:0030182 "neuron differentiation" evidence=ISS

GO:0050775 "positive regulation of dendrite morphogenesis" evidence=ISS

GO:0097105 "presynaptic membrane assembly" evidence=ISS

GO:0005102 "receptor binding" evidence=ISS

GO:0050839 "cell adhesion molecule binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P16621	LAR_DROME	3, ., 1, ., 3, ., 4, 8	0.7156	0.8648	0.0473	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	111
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-20
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	5e-17
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-15
smart00409	85	smart00409, IG, Immunoglobulin	2e-15
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	2e-12
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	1e-11
cd00096	74	cd00096, Ig, Immunoglobulin domain	9e-11
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	2e-10
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	2e-10
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	3e-10
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	6e-10
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	8e-09
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	1e-08
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	4e-08
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	2e-07
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	3e-07
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	4e-07
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	6e-07
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	7e-07
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	8e-07
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	2e-06
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	2e-06
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	3e-06
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	4e-06
cd05773	109	cd05773, Ig8_hNephrin_like, Eighth immunoglobulin-	5e-06
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	6e-06
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	7e-06
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	7e-06
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	1e-05
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	1e-05
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	7e-05
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	7e-05
cd05874	77	cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like	1e-04
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	2e-04
cd05875	77	cd05875, Ig6_hNeurofascin_like, Sixth immunoglobul	3e-04
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	5e-04
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	5e-04
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	5e-04
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	0.001
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	0.001
cd05758	98	cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (I	0.002
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	0.002
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	0.003
cd05739	69	cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobul	0.003

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 78.5 bits (194), Expect = 2e-20
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
           P+ T +P++  V+ G    F C   GDP P + W K+G+ +    S      +  G   L
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLR--SSDRFKVTYEGGTYTL 58

Query: 71  RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
            I  V+   D+  Y CVA N  G+A  A A LTV
Sbjct: 59  TISNVQ-PDDEGKYTCVATNSAGEA-EASAELTV 90

Length = 90

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 69.9 bits (171), Expect = 5e-17
 Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 10/102 (9%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV----SGTQSRYMVQEFPP 65
           PP I   P +  V  G   +  C A G P P IQW KNG+ +       +S  +V    P
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVL---P 57

Query: 66  GGSL--LRIEPVRHAR-DDAVYECVAENGVGDAVSAEASLTV 104
            GSL  LR+   R  R D+ VY CVA N +G+AVS  ASL V
Sbjct: 58  SGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 65.2 bits (159), Expect = 2e-15
 Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 17  PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVR 76
           P +  VK G   +  C A G P P + W K G ++     R+ V       S L I  V 
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSV-SRSGSTSTLTISNVT 59

Query: 77  HARDDAVYECVAENGVGDAVSAEASLTV 104
              D   Y C A N  G   S+  +LTV
Sbjct: 60  PE-DSGTYTCAATNSSGS-ASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 65.2 bits (159), Expect = 2e-15
 Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 17  PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVR 76
           P +  VK G   +  C A G P P + W K G ++     R+ V       S L I  V 
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSV-SRSGSTSTLTISNVT 59

Query: 77  HARDDAVYECVAENGVGDAVSAEASLTV 104
              D   Y C A N  G   S+  +LTV
Sbjct: 60  PE-DSGTYTCAATNSSGS-ASSGTTLTV 85

Length = 85

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 57.4 bits (139), Expect = 2e-12
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 32 CIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENG 91
          C A G+P+P I W K+GK +  +        F   GS L I+ V    D  +Y CVAEN 
Sbjct: 9  CPAEGNPVPNITWLKDGKPLPESNR------FVASGSTLTIKSVSLE-DSGLYTCVAENS 61

Query: 92 VG 93
           G
Sbjct: 62 AG 63

Length = 63

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 55.9 bits (135), Expect = 1e-11
 Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 14/104 (13%)

Query: 6   RFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP 65
            FL  P   +  R   V         C A G+P P I+W+K+G  ++   S    Q+  P
Sbjct: 1   WFLSEPSDIVAVRGGPV------VLNCSAEGEPPPKIEWKKDGVLLN-LVSDERRQQL-P 52

Query: 66  GGSLLRIEPVRHAR----DDAVYECVAENG-VGDAVSAEASLTV 104
            GSLL I  V H++    D+  Y+CVA+N  +G  VS  A LTV
Sbjct: 53  NGSLL-ITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 53.3 bits (127), Expect = 9e-11
 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 29 SFYCIARGDPIPVIQWRKNGKRVSGTQ--SRYMVQEFPPGGSLLRIEPVRHARDDAVYEC 86
          +  C+A G P P I W KNGK +  +        +    G S L I  V    D   Y C
Sbjct: 2  TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLE-DSGTYTC 60

Query: 87 VAENGVG 93
          VA N  G
Sbjct: 61 VASNSAG 67

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 52.4 bits (126), Expect = 2e-10
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 30  FYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE 89
           F C   GDP+P + WRK    +   + R  + +       L+I  V  A D+  Y C AE
Sbjct: 3   FQCEVGGDPVPTVLWRKEDGELP--KGRAEILD----DKSLKIRNVT-AGDEGSYTCEAE 55

Query: 90  NGVGDAVSAEASLTV 104
           N VG  + A ASLTV
Sbjct: 56  NMVG-KIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 52.4 bits (126), Expect = 2e-10
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 15  LRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIE 73
           + P +  V  G +    C   RG P P + WRK+G+ ++    R  + +    G+LL I 
Sbjct: 1   VEPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLL-IA 56

Query: 74  PVRHARDDAVYECVAENGVGDAVSAEASLTV 104
             R + D+  Y+CVA N VG+  SA A L+V
Sbjct: 57  EARKS-DEGTYKCVATNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 52.1 bits (125), Expect = 3e-10
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 8/72 (11%)

Query: 32  CIARGDPIPVIQWRKNGKRVS-GTQSRY-MVQEFPPGGSLLRIEPVRHARDDAVYECVAE 89
           C ARG P P  +W  NG  +     SRY +V     GG+L+   P + A+D   Y+C+A 
Sbjct: 26  CRARGSPPPTYRWLMNGTEIDDEPDSRYSLV-----GGNLVISNPSK-AKDAGRYQCLAS 79

Query: 90  NGVGDAVSAEAS 101
           N VG  +S EA+
Sbjct: 80  NIVGTVLSREAT 91

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 50.8 bits (121), Expect = 6e-10
 Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGS 68
           P IT+ P       GG+T   C A G P P  I W +NG    G+            GS
Sbjct: 1  KPVITVSPSPSVTSGGGVT-LTCSAEGGPPPPTISWYRNGSISGGSGGLG------SSGS 53

Query: 69 LLRIEPVRHARDDAVYECVAEN 90
           L +  V    D   Y CVA N
Sbjct: 54 TLTLSSVTSE-DSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 48.4 bits (115), Expect = 8e-09
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 7/79 (8%)

Query: 26  GITSFYCIARGDPIPVIQWRKNGKRVSGTQSRY-MVQEFPPGGSLLRIEPVRHARDDAVY 84
           G  S  C AR +P P+ +WRKN   +  T  RY MV     GG+L+   P ++ +D   Y
Sbjct: 20  GKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV-----GGNLVINNPDKY-KDAGRY 73

Query: 85  ECVAENGVGDAVSAEASLT 103
            C+  N  G   S EA+L+
Sbjct: 74  VCIVSNIYGKVRSREATLS 92

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 48.4 bits (115), Expect = 1e-08
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 7   FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS-GTQSRYMVQEFPP 65
           F + P   L P           +  C AR  P    +W+ NG  +    +SRY +     
Sbjct: 4   FEEQPSSLLFPEGSP---EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV---- 56

Query: 66  GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL 102
            G+L+   P + ARD   Y+C+A N  G  VS EA+L
Sbjct: 57  AGNLVINNPQK-ARDAGSYQCLAINRCGTVVSREANL 92

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 46.3 bits (110), Expect = 4e-08
 Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 13/93 (13%)

Query: 12  EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
           +  L P    V  G   +  C A G+P P   W K+G  +S +Q+ +             
Sbjct: 1   KPVLTPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFFT----------- 49

Query: 72  IEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
             P   A D   Y CVA NG G   S   +LTV
Sbjct: 50  --PNVSAEDSGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 44.3 bits (105), Expect = 2e-07
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 32 CIARGDPIPVIQWRK-NGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN 90
          CIA G P P I W K  G+  +    R   + F      L+I+ V    DD  Y C A N
Sbjct: 5  CIAEGLPTPEISWIKIGGELPAD---RTKFENF---NKTLKIDNVSEE-DDGEYRCTASN 57

Query: 91 GVGDA 95
           +G A
Sbjct: 58 SLGSA 62

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 43.9 bits (104), Expect = 3e-07
 Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 25  GGITSFYCIARGDPIPVIQWRKNGKRVSGT--QSRYMVQEFPPGGSLLRIEPVRHARDDA 82
           G      C A G P P I WR NG  +       R  V      G  L +  V+   D A
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVD-----GGTLILSNVQP-NDTA 54

Query: 83  VYECVAENGVGDAVSAEASLTV 104
           VY+C A N  G  + A A + V
Sbjct: 55  VYQCNASNVHGYLL-ANAFVHV 75

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 44.2 bits (104), Expect = 4e-07
 Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 10  PPEITLRPR--NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           PP I  R    N     G   +  C A G P P + W K+G+ +   + +Y    F   G
Sbjct: 1   PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKY---SFNEDG 57

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
           S + I  V    D+A Y C+AEN  G+   AE  L V+
Sbjct: 58  SEMTILDVDKL-DEAEYTCIAENKAGEQ-EAEIHLKVF 93

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 43.4 bits (102), Expect = 6e-07
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 29 SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA 88
          S  C A G P+P + W KNG  ++   S+ +       GS L I  VR+  D   Y C+A
Sbjct: 2  SLRCHAEGIPLPRLTWLKNGMDITPKLSKQL--TLIANGSELHISNVRYE-DTGAYTCIA 58

Query: 89 ENGVG 93
          +N  G
Sbjct: 59 KNEAG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 43.8 bits (103), Expect = 7e-07
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 8/73 (10%)

Query: 32  CIARGDPIPVIQWRKNGKRVSGTQS--RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE 89
           C ARG+P+P  +W +NG  +  T+S  RY + +    G+L+ I      +D   Y+C+A 
Sbjct: 26  CEARGNPVPTYRWLRNGTEID-TESDYRYSLID----GNLI-ISNPSEVKDSGRYQCLAT 79

Query: 90  NGVGDAVSAEASL 102
           N +G  +S EA L
Sbjct: 80  NSIGSILSREALL 92

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 43.0 bits (101), Expect = 8e-07
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 8/73 (10%)

Query: 32  CIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENG 91
           C A G+P P  +W KNG+ ++ +++R  V+      + L +       D  +Y+CVAEN 
Sbjct: 21  CKASGNPRPAYRWLKNGQPLA-SENRIEVEAGDLRITKLSLS------DSGMYQCVAENK 73

Query: 92  VGDAVSAEASLTV 104
            G  + A A L V
Sbjct: 74  HG-TIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 42.4 bits (100), Expect = 2e-06
 Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 16/83 (19%)

Query: 18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR------ 71
          R  AV AG      C A G+P P I W K+GK           +E   GG  +R      
Sbjct: 2  RLHAVPAGSTVRLKCPASGNPRPTITWLKDGKP--------FKKEHRIGGYKVRKKKWTL 53

Query: 72 -IEPVRHARDDAVYECVAENGVG 93
           +E V    D   Y C+ EN  G
Sbjct: 54 ILESVV-PSDSGKYTCIVENKYG 75

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 41.9 bits (98), Expect = 2e-06
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 7/81 (8%)

Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
          P +I ++ ++     G   +  C A G+P+PVI+WRK  + +  T       E    G++
Sbjct: 1  PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPAT------AEISMSGAV 54

Query: 70 LRIEPVRHARDDAVYECVAEN 90
          L+I  ++   D+  YEC AEN
Sbjct: 55 LKIFNIQP-EDEGTYECEAEN 74

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 41.8 bits (98), Expect = 3e-06
 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 14/79 (17%)

Query: 21 AVKAGGITSFYCIARGDPIPVIQWRKNGK------RVSGTQSRYMVQEFPPGGSLLRIEP 74
          AV A     F C A G+P P ++W KNGK      R+ G + R            L +E 
Sbjct: 5  AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWS-------LIMES 57

Query: 75 VRHARDDAVYECVAENGVG 93
          V  + D   Y CV EN  G
Sbjct: 58 VVPS-DKGNYTCVVENEYG 75

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 41.0 bits (96), Expect = 4e-06
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 32 CIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENG 91
          C A+GDP P I W K+G +V+ +   ++  E       L I  V  A D   YECVA N 
Sbjct: 5  CSAQGDPEPTITWNKDGVQVTESGKFHISPE-----GYLAIRDVGVA-DQGRYECVARNT 58

Query: 92 VGDAVSA 98
          +G A  +
Sbjct: 59 IGYASVS 65

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143250 cd05773, Ig8_hNephrin_like, Eighth immunoglobulin-like domain of nephrin

 Score = 41.5 bits (97), Expect = 5e-06
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 5  VRFLDPPEITLRPRNQAVKAGG----ITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMV 60
          VRF   P++   P+ + V + G      +  C A+G P    +W KNG  +     RY  
Sbjct: 1  VRF--APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEE 58

Query: 61 QEFPPGG---SLLRIEPVRHARDDAVYECVAENGVG 93
               G    S+L I  V  A D A++ C A N +G
Sbjct: 59 TTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLG 94

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the podocytes. Length = 109

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 40.5 bits (95), Expect = 6e-06
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 32 CIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENG 91
          C ARGDP P I W     ++    SR +V  +  G   L I  +   +D   + C+A N 
Sbjct: 8  CKARGDPEPAIHWISPDGKLISNSSRTLV--YDNG--TLDIL-ITTVKDTGSFTCIASNA 62

Query: 92 VGDAVSA 98
           G+A + 
Sbjct: 63 AGEATAT 69

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 40.7 bits (95), Expect = 7e-06
 Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 25  GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVY 84
           G    F C A+G P PVI W K G ++S    R++V         LRI  V    D   Y
Sbjct: 2   GQTVDFLCEAQGYPQPVIAWTKGGSQLS-VDRRHLVLS----SGTLRISRVA-LHDQGQY 55

Query: 85  ECVAENGVGDAVSAEASLTV 104
           EC A N VG +    A LTV
Sbjct: 56  ECQAVNIVG-SQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 40.5 bits (95), Expect = 7e-06
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
          P  I + P++     G   +  C A G+P+P I+WRK    +  +    M       G++
Sbjct: 1  PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISM------SGAV 54

Query: 70 LRIEPVRHARDDAVYECVAENGVG 93
          L+I  ++   D+  YEC AEN  G
Sbjct: 55 LKIPNIQF-EDEGTYECEAENIKG 77

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 9/76 (11%)

Query: 32  CIARGDPIPVIQWRKNGKRVSGTQ---SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA 88
           C A G P P I W+K+G    GT    +R       P   +  I  V+   D  VY C A
Sbjct: 5   CAATGHPTPQIAWQKDG----GTDFPAARERRMHVMPEDDVFFIVDVKIE-DTGVYSCTA 59

Query: 89  ENGVGDAVSAEASLTV 104
           +N  G ++SA A+LTV
Sbjct: 60  QNTAG-SISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 39.6 bits (92), Expect = 1e-05
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 30 FYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE 89
          F C   G P P ++W KNG  V  +    +V+E     +L  +  V+   D+  Y+C+AE
Sbjct: 4  FECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH----NLQVLGLVK--SDEGFYQCIAE 57

Query: 90 NGVGDAVSA 98
          N VG+  + 
Sbjct: 58 NDVGNVQAG 66

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 37.7 bits (87), Expect = 7e-05
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 28  TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV 87
            +  C A G+P P I W K+   V  T +  + Q        L+IE    + D   YECV
Sbjct: 1   ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL---RSGALQIENSEES-DQGKYECV 56

Query: 88  AENGVGDAVSAEASLTV 104
           A N  G   SA A+L V
Sbjct: 57  ATNSAGTRYSAPANLYV 73

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 37.6 bits (87), Expect = 7e-05
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 32 CIARGDPIPVIQWRKNGKRVSGTQS--RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE 89
          CIA G P P + W     R+ G  S  R            L+++ V  + DD  Y C AE
Sbjct: 5  CIAEGLPTPEVHWD----RIDGPLSPNRTKKLNN---NKTLQLDNVLES-DDGEYVCTAE 56

Query: 90 NGVGDA 95
          N  G A
Sbjct: 57 NSEGSA 62

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143282 cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

 Score = 37.6 bits (87), Expect = 1e-04
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 31 YCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA---VYECV 87
           C A+G P P   W +NG      +   +  +  P    L I  +   + +A   VY+C 
Sbjct: 4  QCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMK--PNTGTLVINIMNGEKAEAYEGVYQCT 61

Query: 88 AENGVGDAVS 97
          A N  G AVS
Sbjct: 62 ARNERGAAVS 71

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 77

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P  I  +PR+  V  G    F C   G+P P + W + G+ +  +Q R+ +       S 
Sbjct: 3   PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQ-RHQITS-TEYKST 60

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLT 103
             I  V+   D+  Y  V EN  G    A+ +LT
Sbjct: 61  FEISKVQ-MSDEGNYTVVVENSEGKQ-EAQFTLT 92

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143283 cd05875, Ig6_hNeurofascin_like, Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

 Score = 36.1 bits (83), Expect = 3e-04
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 17/80 (21%)

Query: 32  CIARGDPIPVIQWRKNGK--------RVS-GTQSRYMVQEFPPGGSLLRIEPVRHARDDA 82
           C A+G+P+P  QW +NGK        RVS   +S  +V +F  GG        R    + 
Sbjct: 5   CEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGG--------RPEDYEG 56

Query: 83  VYECVAENGVGDAVSAEASL 102
            Y+C A N +G A+S +  L
Sbjct: 57  EYQCFARNNLGTALSNKILL 76

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. Length = 77

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 35.8 bits (83), Expect = 5e-04
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 25/85 (29%)

Query: 31  YCIARGDPIPVIQWRKNG-------------KRVSGTQSRYMVQEFPPGGSLLRIEPVRH 77
            C A+G+P P   W +NG             K  SGT    +V +   GG     E    
Sbjct: 4   KCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGT----LVIDNMNGGRAEDYE---- 55

Query: 78  ARDDAVYECVAENGVGDAVSAEASL 102
                 Y+C A N +G A+S E  L
Sbjct: 56  ----GEYQCYASNELGTAISNEIHL 76

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 35.5 bits (82), Expect = 5e-04
 Identities = 28/86 (32%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 25  GGITSFYCIARGDPIPVIQWRK------NGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHA 78
           GG     C  +  P P I W K      N  R+             P GS L I  V  +
Sbjct: 1   GGDVIIECKPKAAPKPTISWSKGTELLTNSSRIC----------IWPDGS-LEILNVTKS 49

Query: 79  RDDAVYECVAENGVGDAVSAEASLTV 104
            D+  Y C AEN  G A S   SL+V
Sbjct: 50  -DEGKYTCFAENFFGKANST-GSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 36.0 bits (83), Expect = 5e-04
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 7/87 (8%)

Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS-GTQS---RYMVQEFPPG 66
          P+IT      AV+   IT   C A GDPIP I WR+  +  S G +S   R +V+     
Sbjct: 3  PKITYLENQTAVELEQIT-LTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRG-HAR 60

Query: 67 GSLLRIEPVRHARDDAVYECVAENGVG 93
           S L ++ V+   D   Y+C A N +G
Sbjct: 61 VSSLTLKDVQLT-DAGRYDCEASNRIG 86

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 17  PRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPV 75
           PR+Q V+ G   SF C A+   P   + W + G    G  SR M  +F     +L I  V
Sbjct: 8   PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVG---GGLPSRAM--DF---NGILTIRNV 59

Query: 76  RHARDDAVYECVAENGVGDAVSAEASL 102
           +   D   Y C   N + D   A A+L
Sbjct: 60  Q-LSDAGTYVCTGSN-MLDTDEATATL 84

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 32 CIARGDPIPVIQWRKNGKRVSGT--QSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE 89
          C   G P P I W  NG  + GT    R  V      G+L  I       D AVY+C A 
Sbjct: 8  CQVEGIPTPNITWSINGAPIEGTDPDPRRHVS----SGAL--ILTDVQPSDTAVYQCEAR 61

Query: 90 N 90
          N
Sbjct: 62 N 62

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 29/98 (29%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRV-SGTQSRYMVQEFPPGG 67
           PP IT      A+  G      C     P P  I W      + SG+  RY V+  P  G
Sbjct: 2   PPIITSEATQYAIL-GDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPG 60

Query: 68  ---SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL 102
              S L I   + +     Y C A N  G    A  SL
Sbjct: 61  GVLSTLTISNTQESDFQTSYNCTAWNSFGSGT-AIISL 97

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 98

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVY 84
          G    F C+A G P P+I WR N   V  +    +  E   G   L I  V+ + D   Y
Sbjct: 1  GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSE--GGYGTLTIRDVKES-DQGAY 57

Query: 85 ECVAENGVG 93
           C A N  G
Sbjct: 58 TCEAINTRG 66

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSG---TQSRYMVQEFPPGG 67
          P+IT      A++     +  C A GDPIP I WR + + +S    T   ++V       
Sbjct: 3  PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARV 62

Query: 68 SLLRIEPVRHARDDAVYECVAENGVG 93
          S L ++ +++  D   Y C A N +G
Sbjct: 63 SSLTLKYIQYT-DAGEYLCTASNTIG 87

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143216 cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 33.3 bits (76), Expect = 0.003
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 11/75 (14%)

Query: 25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVY 84
          GG  +  C+A G P+P ++W K G+ ++         E P G ++L +    +  + A Y
Sbjct: 1  GGSVNLTCVAVGAPMPYVKWMKGGEELTKE------DEMPVGRNVLEL---TNIYESANY 51

Query: 85 ECVAENGVG--DAVS 97
           CVA + +G  +A +
Sbjct: 52 TCVAISSLGMIEATA 66

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.87
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.79
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.77
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.76
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.76
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.76
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.73
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.72
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.72
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.71
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.7
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.7
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.7
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.7
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.7
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.69
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.69
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.69
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.69
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.69
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.68
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.68
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.68
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.68
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.68
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.67
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.67
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.67
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.66
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.66
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.65
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.65
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.65
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.64
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.64
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.64
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.64
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.63
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.63
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.63
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.62
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.61
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.61
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.61
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.61
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.6
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.6
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.6
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.59
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.59
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.59
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.59
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.59
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.58
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.58
KOG4194|consensus	873		99.58
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.56
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.56
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.56
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.54
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.53
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.52
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.52
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.51
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.51
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.51
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.51
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.49
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.49
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.48
KOG3513|consensus	1051		99.48
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.47
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.47
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.47
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.47
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.47
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.46
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.45
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.45
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.45
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.45
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.44
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.44
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.43
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.43
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.39
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.38
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.36
KOG3513|consensus	1051		99.35
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.33
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.29
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.28
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.27
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.25
KOG4221|consensus	1381		99.24
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.24
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.23
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.22
smart00409	86	IG Immunoglobulin.	99.2
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.2
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.18
PHA02826	227	IL-1 receptor-like protein; Provisional	99.14
KOG4222|consensus	1281		99.14
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.13
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.12
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.09
KOG4194|consensus	873		99.06
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	99.04
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.03
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.01
PHA02785	326	IL-beta-binding protein; Provisional	99.0
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.99
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.98
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.96
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.93
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.9
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.88
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.88
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.84
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.84
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.83
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.81
PHA02785	326	IL-beta-binding protein; Provisional	98.81
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.81
PHA02826	227	IL-1 receptor-like protein; Provisional	98.8
KOG4222|consensus	1281		98.79
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.78
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.78
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.76
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.75
KOG4221|consensus	1381		98.73
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.73
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.71
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.71
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.69
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.68
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.65
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.64
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.6
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.57
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.57
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.56
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.55
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.54
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.5
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.46
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.43
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.41
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.39
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.37
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.33
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.3
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.25
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.25
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.22
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.21
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.2
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.18
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.16
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.09
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.08
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.02
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.01
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.97
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.93
smart00406	81	IGv Immunoglobulin V-Type.	97.93
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.89
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.88
KOG3515|consensus	741		97.76
PHA03376	221	BARF1; Provisional	97.73
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.71
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.66
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.63
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.61
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.6
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.6
smart00407	75	IGc1 Immunoglobulin C-Type.	97.57
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.56
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.5
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.47
PHA02633	63	hypothetical protein; Provisional	97.38
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.38
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	97.22
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.19
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.15
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.98
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.88
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.72
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.63
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.56
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.11
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	95.95
KOG1480|consensus	909		95.93
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	94.86
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	93.19
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	93.13
KOG4597|consensus	560		91.12
PHA03042	286	CD47-like protein; Provisional	90.31
PHA03269	566	envelope glycoprotein C; Provisional	90.3
PHA03052	69	Hypothetical protein; Provisional	90.02
PHA03270	466	envelope glycoprotein C; Provisional	89.89
PHA02982	251	hypothetical protein; Provisional	89.39
PHA03273	486	envelope glycoprotein C; Provisional	89.0
KOG3515|consensus	741		86.43
PHA02865	338	MHC-like TNF binding protein; Provisional	86.24
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	84.64
PHA03376	221	BARF1; Provisional	84.09

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.87  E-value=5.7e-20  Score=91.49  Aligned_cols=97  Identities=24%  Similarity=0.390  Sum_probs=82.0

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      |.+...+..+.+..|+.+.|.|.+.|.|.+.+.|++++..+... .++...... ....|.|..+.+ .|.|.|.|.+.|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~-~~~~~~~~~-~~s~L~I~~~~~-~D~G~Ytc~a~N   77 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEG-EGIKIENTE-NSSKLTITEGQQ-EHCGCYTLEVEN   77 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCC-CcEEEEecC-CeeEEEECCCCh-hhCEEEEEEEEc
Confidence            45666778889999999999999999999999999999988643 455554333 445699999998 999999999999


Q ss_pred             CCCceEeeEEEEEEecCCCCC
Q psy2442          91 GVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        91 ~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      ..|.. ...+.|.|.+.|.+|
T Consensus        78 ~~G~~-~~~~~l~V~~~P~pP   97 (98)
T cd05762          78 KLGSR-QAQVNLTVVDKPDPP   97 (98)
T ss_pred             CCCce-eEEEEEEEecCCCCC
Confidence            99985 889999999999887

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.79  E-value=3.8e-17  Score=79.87  Aligned_cols=85  Identities=28%  Similarity=0.475  Sum_probs=68.8

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCC---CCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEE
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP---PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEAS  101 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~  101 (111)
                      |+.+.|.|.+.+.|.+.+.|++++..+.....++......   .....|.|.++.. .|+|.|.|.+.|..|.. ...+.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~-~D~G~YtC~A~N~~G~~-~~~~~   78 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVR-EDSGFFSCHAINSYGED-RGIIQ   78 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCc-ccCEEEEEEEEcCCCcc-eEEEE
Confidence            6889999999999999999999998875443455443211   1224589999998 99999999999999985 88999


Q ss_pred             EEEecCCCCC
Q psy2442         102 LTVYEGEEKP  111 (111)
Q Consensus       102 l~~~~~~~~p  111 (111)
                      |.|..+|.+|
T Consensus        79 L~V~~~P~~P   88 (88)
T cd05735          79 LTVQEPPDPP   88 (88)
T ss_pred             EEEeCCCCCC
Confidence            9999999887

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.77  E-value=5.7e-17  Score=79.27  Aligned_cols=87  Identities=31%  Similarity=0.595  Sum_probs=69.6

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      +|.+...+.+..+..|+.+.|.|.+.|.|.|.+.|++.+..+... .++..     ....|.|.++.. .|.|.|.|.+.
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~-~~~~~-----~~~~L~I~~v~~-~D~G~Y~C~A~   73 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPAT-AEISM-----SGAVLKIFNIQP-EDEGTYECEAE   73 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCC-CEEec-----CCCEEEECcCCh-hhCEEEEEEEE
Confidence            466777777888999999999999999999999999998766432 22221     334589999998 99999999999


Q ss_pred             eCCCceEeeEEEEEE
Q psy2442          90 NGVGDAVSAEASLTV  104 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~  104 (111)
                      |..|.. .....|.|
T Consensus        74 N~~G~~-~~~~~l~V   87 (88)
T cd05851          74 NIKGKD-KHQARVYV   87 (88)
T ss_pred             cCCCce-EEEEEEEE
Confidence            999974 66666654

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.76  E-value=2e-16  Score=77.04  Aligned_cols=82  Identities=26%  Similarity=0.414  Sum_probs=66.4

Q ss_pred             ceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEee
Q psy2442          19 NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSA   98 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~   98 (111)
                      .+.+..|+.+.|.|.+.|.|.|.+.|++++..+.....++...... ....|.|..+.+ .|+|.|.|.+.|..|.. ..
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~-~~~~L~I~~~~~-~D~G~Y~c~a~N~~G~~-~~   80 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYK-DLSSFVIEGAER-EDEGVYTITVTNPVGED-HA   80 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcC-CeEEEEECCCcc-CcCEEEEEEEEeCCCcE-EE
Confidence            4678899999999999999999999999999886543456554322 345699999998 99999999999999974 66


Q ss_pred             EEEEE
Q psy2442          99 EASLT  103 (111)
Q Consensus        99 ~~~l~  103 (111)
                      .+.|.
T Consensus        81 ~~~l~   85 (86)
T cd05894          81 SLFVK   85 (86)
T ss_pred             EEEEE
Confidence            66654

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.76  E-value=1.9e-16  Score=78.05  Aligned_cols=90  Identities=28%  Similarity=0.512  Sum_probs=72.0

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+... .++...... ....|.+.++.. .|+|.|.|.+
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~-~~~~~~~~~-~~~~L~i~~~~~-~D~G~Y~C~a   78 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSS-QRHQITSTE-YKSTFEISKVQM-SDEGNYTVVV   78 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCC-CcEEEEEcC-CeeEEEECCCCc-ccCEeEEEEE
Confidence            3677777788889999999999999999999999999999887543 455544322 335689999998 9999999999


Q ss_pred             eeCCCceEeeEEEE
Q psy2442          89 ENGVGDAVSAEASL  102 (111)
Q Consensus        89 ~~~~~~~~~~~~~l  102 (111)
                      .|..|.. ...+.|
T Consensus        79 ~N~~G~~-~~~~~l   91 (92)
T cd05747          79 ENSEGKQ-EAQFTL   91 (92)
T ss_pred             EcCCCCE-eEEEEe
Confidence            9999874 665554

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.76  E-value=1.4e-16  Score=78.59  Aligned_cols=84  Identities=24%  Similarity=0.411  Sum_probs=66.1

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceE
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAV   96 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~   96 (111)
                      +..+.+.+|+++.|.|.+.+.|.|.+.|++++..+... .++......+....|.|.++.. .|+|.|.|.+.|..|.. 
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~-~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~-   84 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS-DHYNVKVEQGKYASLTIKGVSS-EDSGKYGIVVKNKYGGE-   84 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccC-CCEEEEEcCCCEEEEEEccCCh-hhCEEEEEEEEECCCcc-
Confidence            44567889999999999999999999999999888643 4555443221234599999998 99999999999999875 


Q ss_pred             eeEEEEE
Q psy2442          97 SAEASLT  103 (111)
Q Consensus        97 ~~~~~l~  103 (111)
                      ...+.+.
T Consensus        85 ~~~~~v~   91 (92)
T cd05737          85 TVDVTVS   91 (92)
T ss_pred             eEEEEEe
Confidence            6666554

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.73  E-value=7.4e-16  Score=76.39  Aligned_cols=82  Identities=34%  Similarity=0.638  Sum_probs=65.9

Q ss_pred             ceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEee
Q psy2442          19 NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSA   98 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~   98 (111)
                      ...+..|+++.|.|.+.|.|.|.+.|++++..+.....++....   ....|.|.++.. .|.|.|.|.+.|..|.. ..
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~---~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~-~~   86 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNE---DGSEMTILDVDK-LDEAEYTCIAENKAGEQ-EA   86 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeC---CCCEEEECCCCh-hhCEEEEEEEEcCCCeE-EE
Confidence            34678899999999999999999999999988764323443322   344599999998 99999999999999974 77


Q ss_pred             EEEEEEe
Q psy2442          99 EASLTVY  105 (111)
Q Consensus        99 ~~~l~~~  105 (111)
                      .+.|.|.
T Consensus        87 ~~~L~V~   93 (95)
T cd05730          87 EIHLKVF   93 (95)
T ss_pred             EEEEEEE
Confidence            7777765

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.72  E-value=6e-16  Score=73.38  Aligned_cols=74  Identities=27%  Similarity=0.380  Sum_probs=57.9

Q ss_pred             EEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442          28 TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT  103 (111)
Q Consensus        28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~  103 (111)
                      +.|.|.+.|.|.|.+.|++++..+.....++.+.........|.|.++.. .|+|.|.|.+.|..|.. .....|.
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~-~D~G~Y~C~A~N~~G~~-~~~a~L~   74 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNK-KDAGWYTVSAVNEAGVA-TCHARLD   74 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCCh-hhCEEEEEEEEcCcCeE-EEEEEEe
Confidence            46899999999999999999998864445665544322223699999998 99999999999999975 6665554

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.72  E-value=1.4e-15  Score=75.36  Aligned_cols=88  Identities=25%  Similarity=0.449  Sum_probs=65.0

Q ss_pred             EcCcceeeecCCcEEEEEEEeccCC-CeEEEEE-CCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDPI-PVIQWRK-NGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ..+....+..|+++.|.|.+.|.|. |.+.|++ ++..+.....++.....+.....|.|..+.. .|+|.|.|.+.|..
T Consensus         5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~-~D~G~YtC~A~N~~   83 (96)
T cd05865           5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANI-DDAGIYKCVVSNED   83 (96)
T ss_pred             EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccCh-hhCEEEEEEEEcCC
Confidence            4455567889999999999999984 6999998 5655543234554443322346699999998 99999999999987


Q ss_pred             -CceEeeEEEEEE
Q psy2442          93 -GDAVSAEASLTV  104 (111)
Q Consensus        93 -~~~~~~~~~l~~  104 (111)
                       |.. ...+.|.+
T Consensus        84 ~g~~-~~s~~l~v   95 (96)
T cd05865          84 EGES-EATVNVKI   95 (96)
T ss_pred             CCcE-EEEEEEEE
Confidence             553 66666654

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.71  E-value=1.2e-15  Score=74.86  Aligned_cols=90  Identities=37%  Similarity=0.700  Sum_probs=73.1

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      |.+...+..+.+..|+++.|.|.+.+.|.+.+.|++++..+... .++...... ....|.|.++.. .|.|.|.|.+.|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~-~~~~~~~~~-~~~~L~I~~v~~-~D~G~Y~C~~~n   77 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSS-QRYQIESDG-GSSSLTIKNVTR-EDAGTYTCVASN   77 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESS-SSEEEEEET-TEEEEEESSESG-GGSEEEEEEEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeee-eeeeeeccc-ceeEEccCCCCh-hhCEEEEEEEEE
Confidence            45667778889999999999999999999999999999988753 555554433 456699999998 999999999999


Q ss_pred             CCCceEeeEEEEEE
Q psy2442          91 GVGDAVSAEASLTV  104 (111)
Q Consensus        91 ~~~~~~~~~~~l~~  104 (111)
                      ..|.. ...+.|.|
T Consensus        78 ~~g~~-~~~~~l~V   90 (90)
T PF07679_consen   78 SSGEA-TASVNLTV   90 (90)
T ss_dssp             TTEEE-EEEEEEEE
T ss_pred             CCCEE-EEEEEEEC
Confidence            98764 66666653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.70  E-value=2.5e-15  Score=74.05  Aligned_cols=85  Identities=21%  Similarity=0.359  Sum_probs=65.5

Q ss_pred             cCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      .+..+.+.+|+.+.|.|.+.+.|.|.+.|++++..+... .++...........|.|..+.. +|+|.|.|.+.|..|..
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~   84 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS-EHYSVKLEQGKYASLTIKGVTS-EDSGKYSINVKNKYGGE   84 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC-CCEEEEEcCCCEEEEEECCCCh-hhCEEEEEEEEeCCCce
Confidence            344578899999999999999999999999999887543 4444332221223589999998 99999999999999874


Q ss_pred             EeeEEEEE
Q psy2442          96 VSAEASLT  103 (111)
Q Consensus        96 ~~~~~~l~  103 (111)
                       +..+.++
T Consensus        85 -~~~~~v~   91 (92)
T cd05891          85 -TVDVTVS   91 (92)
T ss_pred             -eeEEEEE
Confidence             6666554

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.70  E-value=2.3e-15  Score=73.96  Aligned_cols=82  Identities=26%  Similarity=0.381  Sum_probs=65.4

Q ss_pred             cCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      .++++.+..|+.+.|.|.+.+. .|.+.|++++..+..  .++....   ....|.|..+.. .|+|.|.|.+.|..|..
T Consensus         9 ~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~--~~~~~~~---~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~   81 (91)
T cd05740           9 SVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP--PRLQLSN---DNRTLTFNNVTR-SDTGHYQCEASNEVSNM   81 (91)
T ss_pred             ccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC--CCEEEeC---CCCEEEECcCCh-hhCEEEEEEEEcCCCCE
Confidence            3456688899999999999999 889999999988753  3443332   334599999998 99999999999999876


Q ss_pred             EeeEEEEEE
Q psy2442          96 VSAEASLTV  104 (111)
Q Consensus        96 ~~~~~~l~~  104 (111)
                      .+..+.|.|
T Consensus        82 ~S~~~~L~V   90 (91)
T cd05740          82 TSDPYILNV   90 (91)
T ss_pred             EeeeEEEEe
Confidence            566776655

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.70  E-value=4.8e-15  Score=72.49  Aligned_cols=86  Identities=28%  Similarity=0.567  Sum_probs=66.4

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      +.+...+....+..|+.+.|.|.+.+.|.|.+.|++.+..+... ....  .   ....|.|.++.. .|+|.|.|.+.|
T Consensus         2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~--~---~~~~L~i~~v~~-~D~G~Y~C~a~N   74 (88)
T cd04968           2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS-AEIS--M---SGAVLKIPNIQF-EDEGTYECEAEN   74 (88)
T ss_pred             CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc-cEEE--E---eCCEEEECCCCc-ccCEEEEEEEEE
Confidence            34455667777889999999999999999999999987765432 2222  1   334599999998 999999999999


Q ss_pred             CCCceEeeEEEEEE
Q psy2442          91 GVGDAVSAEASLTV  104 (111)
Q Consensus        91 ~~~~~~~~~~~l~~  104 (111)
                      ..|.. .....|.|
T Consensus        75 ~~G~~-~~~~~l~V   87 (88)
T cd04968          75 IKGKD-THQGRIYV   87 (88)
T ss_pred             CCCcE-EEEEEEEE
Confidence            99874 66666654

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.70  E-value=9.3e-16  Score=72.73  Aligned_cols=73  Identities=41%  Similarity=0.640  Sum_probs=58.3

Q ss_pred             cCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442          24 AGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT  103 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~  103 (111)
                      +|+.+.|.|.+.+.|.|.+.|++++..+... .++...    ....|.|.++.. .|.|.|.|.+.|..|.. .....|.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~-~~~~~~----~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~-~~~~~L~   73 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD-RRHLVL----SSGTLRISRVAL-HDQGQYECQAVNIVGSQ-RTVAQLT   73 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCC-CCeEEc----cCCeEEEeeCCH-HhCEEEEEEEEeCCCce-eEEEEEe
Confidence            5889999999999999999999999887543 333332    334599999998 99999999999999874 6665554

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.70  E-value=6e-15  Score=73.38  Aligned_cols=91  Identities=29%  Similarity=0.499  Sum_probs=66.4

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCC----CCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGT----QSRYMVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      .|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+...    ..++...... ....|.|.++.. .|.|.|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~-~~~~L~I~~v~~-~D~G~Y~   79 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHA-RVSSLTLKYIQY-TDAGEYL   79 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCc-cEEEEEEecCcc-CcCEEEE
Confidence            567766665555666899999999999999999999987765322    1222222111 224599999998 9999999


Q ss_pred             EEeeeCCCceEeeEEEEE
Q psy2442          86 CVAENGVGDAVSAEASLT  103 (111)
Q Consensus        86 c~~~~~~~~~~~~~~~l~  103 (111)
                      |.+.|..|.. ...+.|.
T Consensus        80 C~A~N~~G~~-~~~~~l~   96 (97)
T cd05869          80 CTASNTIGQD-SQSMYLE   96 (97)
T ss_pred             EEEecCCCCe-eEEEEEE
Confidence            9999999975 6666554

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.69  E-value=1.7e-15  Score=71.91  Aligned_cols=74  Identities=26%  Similarity=0.369  Sum_probs=57.3

Q ss_pred             EEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442          28 TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT  103 (111)
Q Consensus        28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~  103 (111)
                      +.|.|.+.|.|.|.+.|++++..+.....++...........|.|..+.. .|+|.|.|.+.|..|.. +....|.
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~-~~~a~L~   74 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATK-EDAGWYTVSAKNEAGIV-SCTARLD   74 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCH-HHCEEEEEEEEcCCCEE-EEEEEEe
Confidence            46899999999999999999998865445665543221222588999998 99999999999999975 6665554

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.69  E-value=1.6e-15  Score=73.68  Aligned_cols=81  Identities=32%  Similarity=0.532  Sum_probs=65.1

Q ss_pred             EcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      ..+....+..|+.+.|.|.+.+.|.|.+.|++++..+... .++..     ....|.+.++.. .|+|.|.|.+.|..|.
T Consensus         4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~-~~~~~-----~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~   76 (85)
T cd05728           4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASE-NRIEV-----EAGDLRITKLSL-SDSGMYQCVAENKHGT   76 (85)
T ss_pred             ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCC-CeEEE-----eCCEEEEeeCCH-HHCEEEEEEEECCCCe
Confidence            4556678889999999999999999999999999987543 34433     233589999998 9999999999999987


Q ss_pred             eEeeEEEEE
Q psy2442          95 AVSAEASLT  103 (111)
Q Consensus        95 ~~~~~~~l~  103 (111)
                      . ...+.|.
T Consensus        77 ~-~~~~~l~   84 (85)
T cd05728          77 I-YASAELA   84 (85)
T ss_pred             E-EEEEEEE
Confidence            4 6666554

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.69  E-value=3.5e-15  Score=71.10  Aligned_cols=73  Identities=36%  Similarity=0.595  Sum_probs=57.9

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCeeccCCC--CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEE
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQ--SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL  102 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l  102 (111)
                      |+.+.|.|.+.+.|.|.+.|+++|..+....  .++..     ....|.|.++.. .|+|.|.|.+.|..|.. .....|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~-----~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~-~~~~~l   73 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV-----SSGALILTDVQP-SDTAVYQCEARNRHGNL-LANAHV   73 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe-----eCCEEEECCCCh-hhCEEEEEEEECCCCeE-EEEEEE
Confidence            6789999999999999999999998875432  13322     234589999998 99999999999999874 666666


Q ss_pred             EE
Q psy2442         103 TV  104 (111)
Q Consensus       103 ~~  104 (111)
                      .|
T Consensus        74 ~V   75 (76)
T cd05867          74 HV   75 (76)
T ss_pred             EE
Confidence            54

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.69  E-value=1.5e-15  Score=71.68  Aligned_cols=72  Identities=28%  Similarity=0.511  Sum_probs=57.6

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT  103 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~  103 (111)
                      |+++.|.|.+.+.|.|.+.|++++..+... .++...    ....|.|.++.. .|.|.|.|.+.|..|.. .....|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~-~r~~~~----~~g~L~I~~v~~-~D~G~Y~C~A~N~~G~~-~~~~~l~   72 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNN-SRISIW----DDGSLEILNITK-LDEGSYTCFAENNRGKA-NSTGVLS   72 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccC-CCEEEc----CCCEEEECcCCh-hHCEEEEEEEECCCCce-eEEEEEE
Confidence            678999999999999999999998876533 565553    234599999998 99999999999999875 5555543

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.69  E-value=3.4e-15  Score=72.68  Aligned_cols=81  Identities=35%  Similarity=0.638  Sum_probs=62.9

Q ss_pred             CcceeeecCCcEEEEEEE-eccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442          17 PRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      +....+..|+++.|.|.+ .+.|.+.+.|++++..+.....++...    ....|.|.++.. .|+|.|.|.+.|..|..
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~----~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~   77 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV----DDGNLLIAEARK-SDEGTYKCVATNMVGER   77 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEc----cCCEEEEeECCc-ccCEEEEEEEEeccCce
Confidence            455678899999999997 688889999999998876543444443    234599999998 99999999999998864


Q ss_pred             EeeEEEE
Q psy2442          96 VSAEASL  102 (111)
Q Consensus        96 ~~~~~~l  102 (111)
                      .+....+
T Consensus        78 ~s~~~~l   84 (86)
T cd05724          78 ESAAARL   84 (86)
T ss_pred             eeeeEEE
Confidence            3444443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.68  E-value=4.2e-15  Score=70.60  Aligned_cols=74  Identities=26%  Similarity=0.334  Sum_probs=57.4

Q ss_pred             EEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442          28 TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT  103 (111)
Q Consensus        28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~  103 (111)
                      +.|.|.+.|.|.|.+.|++++..+.....++...........|.|..+.. .|.|.|.|.+.|..|.. .....|.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~-~~~~~l~   74 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANK-EDAGWYTVSAVNEAGVV-SCNARLD   74 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCc-ccCEEEEEEEEcCCCcE-EEEEEEe
Confidence            36899999999999999999998865445555543221223599999998 99999999999999975 6666554

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.68  E-value=1.2e-14  Score=73.69  Aligned_cols=100  Identities=24%  Similarity=0.370  Sum_probs=70.8

Q ss_pred             cCCCeeEEcCcce-ee---ecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCC---CCCeEEEEccCC-CCC
Q psy2442           8 LDPPEITLRPRNQ-AV---KAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP---PGGSLLRIEPVR-HAR   79 (111)
Q Consensus         8 ~~~p~~~~~~~~~-~~---~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~-~~~   79 (111)
                      ..+|.+...+... .+   ..|+.+.|.|.+.|.|.+.+.|++++..+.....++......   .....|.|.++. . .
T Consensus         2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~-~   80 (109)
T cd05773           2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAA-L   80 (109)
T ss_pred             ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCcc-C
Confidence            3466665444321 12   246789999999999999999999999886433455432111   012458888876 5 8


Q ss_pred             CCeEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          80 DDAVYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        80 d~g~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      |.|.|.|.+.|..|.. ...+.|.+.++|.
T Consensus        81 D~G~Y~C~A~N~~G~~-~~~i~L~~~~~p~  109 (109)
T cd05773          81 DYALFTCTAHNSLGED-SLDIQLVSTSRPD  109 (109)
T ss_pred             CCEEEEEEEEeCCccC-cEEEEEEecCCCC
Confidence            9999999999999985 8888888877663

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.68  E-value=5.8e-15  Score=73.74  Aligned_cols=86  Identities=17%  Similarity=0.222  Sum_probs=65.2

Q ss_pred             cceeeecCCcEEEEEEEec-cCCCeEEEEECCeeccCCCCceEEEeC---CCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          18 RNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEF---PPGGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      ..+.+..|+.+.|.|.+.+ .|.|.+.|+++|..+............   ......|.|..+.. .|+|.|.|.+.|..|
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Ytc~A~N~~G   89 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKE-SEAGTYTFLASNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCH-hhCeeEEEEEECCCc
Confidence            3467889999999999999 888899999999988643222222110   00135599999998 999999999999999


Q ss_pred             ceEeeEEEEEEe
Q psy2442          94 DAVSAEASLTVY  105 (111)
Q Consensus        94 ~~~~~~~~l~~~  105 (111)
                      .. +..+.|.|.
T Consensus        90 ~~-~~t~~L~V~  100 (101)
T cd04975          90 SK-SLTFELYVN  100 (101)
T ss_pred             cE-EEEEEEEEE
Confidence            74 777777664

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.68  E-value=3.8e-15  Score=70.96  Aligned_cols=75  Identities=31%  Similarity=0.490  Sum_probs=57.5

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      |+.+.|.|.+.|.|.|.+.|+++|..+...........   ....+.+..+.. .|.|.|.|.+.|..|.. .....|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~---~~~~l~i~~v~~-~D~G~Y~C~A~N~~G~~-~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV---DGDTIIFSKVQE-RSSAVYQCNASNEYGYL-LANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe---cCCEEEECCCCH-hhCEEEEEEEEcCCCEE-EEEEEEEe
Confidence            67889999999999999999999988753211111111   233588889998 99999999999999975 77776655

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.68  E-value=9.9e-15  Score=72.73  Aligned_cols=90  Identities=30%  Similarity=0.566  Sum_probs=65.2

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--CeeccC----CCCceEEEeCCCCCeEEEEccCCCCCCCeE
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVSG----TQSRYMVQEFPPGGSLLRIEPVRHARDDAV   83 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~   83 (111)
                      +|.+.. +.+..+..|+.++|.|.+.|.|.|.+.|++.  +..+..    ...++...... ....|.|.++.. .|+|.
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~-~~~~L~I~~v~~-~D~G~   78 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH-GESSLHIKDVKL-SDSGR   78 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecC-CeeEEEEeeCCc-CCCEE
Confidence            567654 5567889999999999999999999999984  333321    11344433211 234599999998 99999


Q ss_pred             EEEEeeeCCCceEeeEEEEE
Q psy2442          84 YECVAENGVGDAVSAEASLT  103 (111)
Q Consensus        84 y~c~~~~~~~~~~~~~~~l~  103 (111)
                      |.|.+.|..|.. ...+.|.
T Consensus        79 Y~C~A~N~~G~~-~~~~~l~   97 (98)
T cd05870          79 YDCEAASRIGGH-QKSMYLD   97 (98)
T ss_pred             EEEEEeccCCcc-eeEEEEe
Confidence            999999999874 5555543

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.67  E-value=1.4e-14  Score=72.24  Aligned_cols=93  Identities=39%  Similarity=0.641  Sum_probs=64.9

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCC----CCceEEEeCCCCCeEEEEc--cCCCCCCCeE
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGT----QSRYMVQEFPPGGSLLRIE--PVRHARDDAV   83 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~--~~~~~~d~g~   83 (111)
                      +|.+...+....+..|+.+.|.|.+.+.|.|.+.|+++|..+...    ..+..... ++....+.+.  .... .|.|.
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~D~G~   78 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLP-SGSLFFLRVVHGRKGR-SDEGV   78 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEec-CCcEEEEEeeccCCCc-CcCEE
Confidence            467777788888999999999999999999999999999887541    11111111 1111112222  2256 89999


Q ss_pred             EEEEeeeCCCceEeeEEEEEE
Q psy2442          84 YECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        84 y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      |.|.+.|..|...+....|.|
T Consensus        79 Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          79 YVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEEccccceecceEEEEe
Confidence            999999999874456665544

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.67  E-value=1.5e-14  Score=71.01  Aligned_cols=84  Identities=26%  Similarity=0.455  Sum_probs=63.6

Q ss_pred             cCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      .+....+..|+.+.|.|.+.|.|.|.+.|++++..+... ......... ....|.+.++.. .|.|.|.|.+.|..|..
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~-~~~~~~~~~-~~~~L~I~~v~~-~D~g~Y~C~A~N~~G~~   82 (90)
T cd04972           6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQT-RTDTLETTV-DIYNLQLSNITS-ETQTTVTCTAENPVGQA   82 (90)
T ss_pred             CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCC-ccEEEEecC-CEEEEEEecCCc-ccCEEEEEEEECCCCce
Confidence            445566889999999999999999999999999877532 221111111 334589999998 99999999999999874


Q ss_pred             EeeEEEEE
Q psy2442          96 VSAEASLT  103 (111)
Q Consensus        96 ~~~~~~l~  103 (111)
                       .....|.
T Consensus        83 -~~~~~L~   89 (90)
T cd04972          83 -NVSVQVT   89 (90)
T ss_pred             -eEEEEEe
Confidence             6665554

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.67  E-value=1.3e-14  Score=71.34  Aligned_cols=86  Identities=26%  Similarity=0.455  Sum_probs=64.0

Q ss_pred             EcCcceeeecCCcEEEEEEEeccCCCeEEEEEC-CeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN-GKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      ..+..+.+..|+++.|.|.+.|.|. .+.|++. +..+. ...++.... ++....|.|..+.. .|+|.|.|.+.|..|
T Consensus         5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~-~~~r~~~~~-~g~~~~L~I~~v~~-~D~G~Y~C~A~N~~G   80 (92)
T cd05866           5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIV-SSQRVVVQK-EGVRSRLTIYNANI-EDAGIYRCQATDAKG   80 (92)
T ss_pred             EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEec-CCCCEEEEe-CCCeeEEEEecCCh-HHCEEEEEEEEcCCC
Confidence            4455678889999999999999887 8999985 55543 235555442 21334699999998 999999999999998


Q ss_pred             ceEeeEEEEEE
Q psy2442          94 DAVSAEASLTV  104 (111)
Q Consensus        94 ~~~~~~~~l~~  104 (111)
                      ......+.|.+
T Consensus        81 ~~~~~~i~l~~   91 (92)
T cd05866          81 QTQEATVVLEI   91 (92)
T ss_pred             cEEEEEEEEEE
Confidence            75455555543

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.66  E-value=1.2e-14  Score=71.75  Aligned_cols=86  Identities=33%  Similarity=0.545  Sum_probs=61.1

Q ss_pred             CeeEEcCcceeeec---CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCC-CCCCCeEEEE
Q psy2442          11 PEITLRPRNQAVKA---GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVR-HARDDAVYEC   86 (111)
Q Consensus        11 p~~~~~~~~~~~~~---g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~d~g~y~c   86 (111)
                      |.+...+....+..   +..+.|.|.+.|.|.|.+.|++++..+.....++...     ...|.+..+. . .|+|.|.|
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~-----~g~L~I~~~~~~-~D~G~Y~C   75 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV-----GGNLVINNPDKY-KDAGRYVC   75 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE-----CCEEEECcCCcC-CCCEEEEE
Confidence            45555555543333   4479999999999999999999998875433444332     2348887764 5 89999999


Q ss_pred             EeeeCCCceEeeEEEE
Q psy2442          87 VAENGVGDAVSAEASL  102 (111)
Q Consensus        87 ~~~~~~~~~~~~~~~l  102 (111)
                      .+.|..|...+....|
T Consensus        76 ~A~N~~G~~~s~~a~l   91 (93)
T cd05849          76 IVSNIYGKVRSREATL   91 (93)
T ss_pred             EEEeCcceEEEccEEE
Confidence            9999998754444444

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.66  E-value=2.1e-14  Score=70.99  Aligned_cols=85  Identities=28%  Similarity=0.541  Sum_probs=60.3

Q ss_pred             CeeEEcCcceeee---cCCcEEEEEEEeccCCCeEEEEECCeeccCCC-CceEEEeCCCCCeEEEEccC-CCCCCCeEEE
Q psy2442          11 PEITLRPRNQAVK---AGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ-SRYMVQEFPPGGSLLRIEPV-RHARDDAVYE   85 (111)
Q Consensus        11 p~~~~~~~~~~~~---~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~~~~d~g~y~   85 (111)
                      |.+...+..+.+.   .|+.+.|.|.+.|.|.|.+.|++++..+.... .++..     ....|.+..+ .. .|+|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~-----~~g~L~i~~~~~~-~D~G~Y~   75 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSL-----IDGNLIISNPSEV-KDSGRYQ   75 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEe-----eCCeEEEccCCcc-CcCEEEE
Confidence            4555566554443   47899999999999999999999998885332 22222     1234777776 45 8999999


Q ss_pred             EEeeeCCCceEeeEEE
Q psy2442          86 CVAENGVGDAVSAEAS  101 (111)
Q Consensus        86 c~~~~~~~~~~~~~~~  101 (111)
                      |.+.|..|...+....
T Consensus        76 C~A~N~~G~~~S~~~~   91 (94)
T cd05848          76 CLATNSIGSILSREAL   91 (94)
T ss_pred             EEEEcCCCeEEeccEE
Confidence            9999999875344443

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.65  E-value=2e-14  Score=69.81  Aligned_cols=79  Identities=34%  Similarity=0.562  Sum_probs=60.8

Q ss_pred             eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCC--ceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442          20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS--RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS   97 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~   97 (111)
                      +.+..|+.+.|.|.+.+.|.|.+.|++++..+.....  .+....   ....|.+..+.. .|+|.|.|.+.|..|.. .
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~---~~~~l~i~~~~~-~D~G~Y~C~a~N~~G~~-~   78 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRN---QHWSLIMESVVP-SDKGNYTCVVENEYGSI-N   78 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeC---CceEEEEccCCc-ccCEEEEEEEEeCCCEE-E
Confidence            4677899999999999999999999999998754311  111111   234588888998 99999999999999874 6


Q ss_pred             eEEEEE
Q psy2442          98 AEASLT  103 (111)
Q Consensus        98 ~~~~l~  103 (111)
                      ..+.|.
T Consensus        79 ~~~~l~   84 (85)
T cd05857          79 HTYHLD   84 (85)
T ss_pred             EEEEEE
Confidence            666664

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.65  E-value=2.4e-14  Score=67.83  Aligned_cols=73  Identities=22%  Similarity=0.394  Sum_probs=57.9

Q ss_pred             cEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442          27 ITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT  103 (111)
Q Consensus        27 ~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~  103 (111)
                      .+.|.|.+.|.|.|.+.|++++..+... .++...... ....|.|.++.. .|+|.|.|.+.|..|.. +..+.|.
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~-~~~~~~~~~-~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~-~~~~~l~   73 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLS-GRVQIETTA-SSTSLVIKNAER-SDSGKYTLTLKNPAGEK-SATINVK   73 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCC-CeEEEEECC-CeEEEEECCCCc-CcCEEEEEEEECCCccE-EEEEEEE
Confidence            3679999999999999999999988433 455544322 345699999998 99999999999999874 6666654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.65  E-value=2.9e-14  Score=70.79  Aligned_cols=90  Identities=31%  Similarity=0.497  Sum_probs=65.8

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCC----CCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGT----QSRYMVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      +|.+. ...+..+..|+.+.|.|.+.+.|.|.+.|++++..+...    ..++.... ......|.|.++.. .|+|.|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~-~D~G~Y~   78 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRG-HARVSSLTLKDVQL-TDAGRYD   78 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeC-CccEEEEEECcCCc-CcCEEeE
Confidence            45664 344567889999999999999999999999988655422    12333221 11234599999998 9999999


Q ss_pred             EEeeeCCCceEeeEEEEE
Q psy2442          86 CVAENGVGDAVSAEASLT  103 (111)
Q Consensus        86 c~~~~~~~~~~~~~~~l~  103 (111)
                      |.+.|..|.. ...+.|.
T Consensus        79 C~a~N~~G~~-~~s~~l~   95 (96)
T cd05732          79 CEASNRIGGD-QQSMYLE   95 (96)
T ss_pred             EEEEeCCCCc-EEEEEEe
Confidence            9999999975 6665554

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.64  E-value=1.8e-14  Score=68.58  Aligned_cols=75  Identities=33%  Similarity=0.470  Sum_probs=58.3

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      |+.+.|.|.+.+.|.|.+.|++++..+...........   ....|.+..+.. .|.|.|.|.+.|..|.. .....|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~---~~~~L~i~~v~~-~D~G~Y~C~A~N~~G~~-~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRV---DGGTLILSNVQP-NDTAVYQCNASNVHGYL-LANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEc---cCCEEEECCCCh-hhCEEEEEEEEccCCeE-EEeEEEEE
Confidence            67899999999999999999999988754322211111   345589999998 99999999999998874 66666654

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.64  E-value=2.1e-14  Score=68.53  Aligned_cols=74  Identities=27%  Similarity=0.542  Sum_probs=55.8

Q ss_pred             EEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceE-eeEEEEEEe
Q psy2442          28 TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAV-SAEASLTVY  105 (111)
Q Consensus        28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~-~~~~~l~~~  105 (111)
                      ++|.|.+.|.|.|.+.|+++|..+.....++....   ....|.|.++.. .|+|.|.|.+.|..|... ...+.|.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~---~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS---KERTLTLRSAGP-DDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC---CCCEEEEeeCCc-ccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            47899999999999999999998754433444332   334589999998 999999999999988632 345565553

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.64  E-value=1.4e-14  Score=68.52  Aligned_cols=72  Identities=32%  Similarity=0.543  Sum_probs=57.7

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT  103 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~  103 (111)
                      |+.+.|.|.+.+.|.|.+.|++++..+... .++...    ....|.|.++.. .|+|.|.|.+.|..|.. .....|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~~----~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~-~~~~~l~   72 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNS-SRICIW----PDGSLEILNVTK-SDEGKYTCFAENFFGKA-NSTGSLS   72 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccC-CCEEEC----CCCeEEEccCCh-hHCEEEEEEEECCCCce-EEEEEEE
Confidence            678999999999999999999999887533 455443    234599999998 99999999999999874 6666554

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.64  E-value=5.1e-14  Score=68.39  Aligned_cols=81  Identities=23%  Similarity=0.274  Sum_probs=60.9

Q ss_pred             CcEEEEEEEeccCCC--eEEEEECCeeccCC--CCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEE
Q psy2442          26 GITSFYCIARGDPIP--VIQWRKNGKRVSGT--QSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEAS  101 (111)
Q Consensus        26 ~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~  101 (111)
                      +++.|.|.+.+.|.|  .+.|++++..+...  ..++...........|.|.+++. .|.|.|.|.+.|..|.. +....
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~YtC~A~n~~g~~-~~~~~   78 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQL-SHAGTYTCTAQTVVDSA-SASAT   78 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCCh-hhCeEEEEEEecCCCCE-EEEEE
Confidence            468999999999887  57999999887432  22332211111234699999998 99999999999999985 88888


Q ss_pred             EEEecCC
Q psy2442         102 LTVYEGE  108 (111)
Q Consensus       102 l~~~~~~  108 (111)
                      |.|.++|
T Consensus        79 L~V~~~P   85 (85)
T cd05854          79 LVVRGPP   85 (85)
T ss_pred             EEEECCC
Confidence            8888765

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.63  E-value=2.2e-14  Score=67.49  Aligned_cols=70  Identities=31%  Similarity=0.612  Sum_probs=54.3

Q ss_pred             cEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442          27 ITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT  103 (111)
Q Consensus        27 ~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~  103 (111)
                      .+.|.|.+.|.|.|.+.|++++..+... .++....   . ..+.+..+.. .|.|.|.|.+.|..|.. .....|.
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~-~~~~~~~---~-~~l~i~~v~~-~D~G~Y~C~A~N~~G~~-~~~~~L~   70 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPS-DYFKIVK---E-HNLQVLGLVK-SDEGFYQCIAENDVGNV-QASAQLI   70 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCC-CCEEEEe---c-CCEEEEcCCc-ccCEEEEEEEEcCCCEE-EEEEEEE
Confidence            3689999999999999999999887543 4444432   2 2377778888 99999999999999874 6666554

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.63  E-value=3.5e-14  Score=70.39  Aligned_cols=85  Identities=34%  Similarity=0.589  Sum_probs=60.8

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCC-ceEEEeCCCCCeEEEEccC-----CCCCCCeEEEEE
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS-RYMVQEFPPGGSLLRIEPV-----RHARDDAVYECV   87 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~-----~~~~d~g~y~c~   87 (111)
                      ...+....+..|+++.|.|.+.+.|.|.+.|+++|..+..... ++....   .. .+.+..+     .. .|.|.|.|.
T Consensus         3 ~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~---~~-~l~i~~v~~~~~~~-~D~G~Y~C~   77 (95)
T cd05722           3 LSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLP---NG-SLLITSVVHSKHNK-PDEGFYQCV   77 (95)
T ss_pred             EECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEcc---CC-eEEEeeeeccCCCC-CcCEEEEEE
Confidence            3456666778899999999999999999999999998864322 232221   22 2444443     46 899999999


Q ss_pred             eeeC-CCceEeeEEEEE
Q psy2442          88 AENG-VGDAVSAEASLT  103 (111)
Q Consensus        88 ~~~~-~~~~~~~~~~l~  103 (111)
                      +.|. .|...+..+.|.
T Consensus        78 a~N~~~G~~~s~~~~l~   94 (95)
T cd05722          78 AQNDSLGSIVSRTARLT   94 (95)
T ss_pred             EECCccCcEEEeeeEEe
Confidence            9999 887545555554

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.63  E-value=1.5e-13  Score=67.99  Aligned_cols=86  Identities=31%  Similarity=0.537  Sum_probs=60.9

Q ss_pred             CeeEEcCcceeeecC---CcEEEEEEEeccCCCeEEEEECCeeccCC-CCceEEEeCCCCCeEEEEccC-CCCCCCeEEE
Q psy2442          11 PEITLRPRNQAVKAG---GITSFYCIARGDPIPVIQWRKNGKRVSGT-QSRYMVQEFPPGGSLLRIEPV-RHARDDAVYE   85 (111)
Q Consensus        11 p~~~~~~~~~~~~~g---~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-~~~~d~g~y~   85 (111)
                      |.+...+..+.+.+|   +++.|.|.+.+.|.+.+.|+++|..+... ..++...    . ..|.|.+. .. .|+|.|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~----~-g~L~I~~~~~~-~D~G~Y~   75 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV----A-GNLVINNPQKA-RDAGSYQ   75 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE----C-CeEEEccCCcc-CcCEEEE
Confidence            455556666555444   57999999999999999999999988532 2333332    2 33777664 45 8999999


Q ss_pred             EEeeeCCCceEeeEEEE
Q psy2442          86 CVAENGVGDAVSAEASL  102 (111)
Q Consensus        86 c~~~~~~~~~~~~~~~l  102 (111)
                      |.+.|..|...+....|
T Consensus        76 C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          76 CLAINRCGTVVSREANL   92 (94)
T ss_pred             EEEEcCcCcEEEEEEEE
Confidence            99999998754444444

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.62  E-value=3e-14  Score=66.05  Aligned_cols=65  Identities=26%  Similarity=0.373  Sum_probs=52.3

Q ss_pred             EEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442          28 TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      +.|.|.+.|.|.|.+.|+++|..+...  .        ....|.|.++.. +|+|.|.|.+.|..|.. ...+.+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--~--------~~~~L~i~~v~~-~D~G~YtC~a~N~~g~~-~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK--H--------SQHSLQIKDVTE-ASAGTYTLVLWNSAAGL-EKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc--C--------CcCEEEECCCCH-HHCEEEEEEEEECCccE-EEEEEEEE
Confidence            368999999999999999999987521  0        334589999998 99999999999999864 55655554

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.61  E-value=4.1e-14  Score=69.46  Aligned_cols=78  Identities=32%  Similarity=0.491  Sum_probs=60.1

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCeecc-------CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNGKRVS-------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS   97 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~   97 (111)
                      |+++.|.|.+.+.|.|.+.|++.+....       ....++...    ....|.|.++.. .|+|.|.|.+.|..|.. .
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~----~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~-~   74 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS----QTGDLTITNVQR-SDVGYYICQTLNVAGSI-L   74 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC----CCCeEEEeeCCh-hhCEEEEEEEEcCCCce-E
Confidence            6789999999999999999999876431       112344432    233599999998 99999999999999985 7


Q ss_pred             eEEEEEEecCC
Q psy2442          98 AEASLTVYEGE  108 (111)
Q Consensus        98 ~~~~l~~~~~~  108 (111)
                      ..+.|.|.+..
T Consensus        75 ~~~~l~V~~~~   85 (90)
T cd05726          75 TKAYLEVTDVI   85 (90)
T ss_pred             EEEEEEEeecc
Confidence            78888887543

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.61  E-value=3.8e-14  Score=67.95  Aligned_cols=76  Identities=24%  Similarity=0.517  Sum_probs=59.0

Q ss_pred             cceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442          18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS   97 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~   97 (111)
                      ....+..|+.+.|.|.+.+. .+.+.|+++|..+... .++...     ...|.|..+.. .|+|.|.|.+.|..|.. .
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~-~~~~~~-----~~~L~I~~~~~-~DsG~Y~C~a~n~~g~~-~   72 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGEN-NRTRIT-----GEEVQIKDAVP-RDSGLYACVTSSPSGSD-T   72 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCC-ceEEEe-----CCEEEECCCCh-hhCEEEEEEEeCCCCcc-c
Confidence            34677899999999999886 5689999999888643 455442     23589999998 99999999999988764 5


Q ss_pred             eEEEE
Q psy2442          98 AEASL  102 (111)
Q Consensus        98 ~~~~l  102 (111)
                      ..+.+
T Consensus        73 ~~~~v   77 (79)
T cd04973          73 TYFSV   77 (79)
T ss_pred             EEEEE
Confidence            55544

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.61  E-value=5.8e-14  Score=67.90  Aligned_cols=81  Identities=20%  Similarity=0.235  Sum_probs=61.4

Q ss_pred             CcEEEEEEEecc--CCCeEEEEECCeeccC--CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEE
Q psy2442          26 GITSFYCIARGD--PIPVIQWRKNGKRVSG--TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEAS  101 (111)
Q Consensus        26 ~~~~l~c~~~~~--~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~  101 (111)
                      +++.|.|.+.+.  ..+.+.|+++|..+..  ...++...........|.|.+++. .|+|.|.|.+.|..+.. .....
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~-~dsG~YtC~a~n~~~~~-~a~a~   78 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQL-KHAGKYVCMVQTSVDKL-SAAAD   78 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCH-HHCEEEEEEEEcccCce-EEEEE
Confidence            367899998774  4668999999999862  223544432111334599999998 99999999999999885 88888


Q ss_pred             EEEecCC
Q psy2442         102 LTVYEGE  108 (111)
Q Consensus       102 l~~~~~~  108 (111)
                      |.|.++|
T Consensus        79 L~V~~pP   85 (85)
T cd05853          79 LIVRGPP   85 (85)
T ss_pred             EEEecCC
Confidence            8888876

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.61  E-value=1.2e-13  Score=68.09  Aligned_cols=85  Identities=26%  Similarity=0.450  Sum_probs=59.7

Q ss_pred             EcCcceeeecCCcEEEEEEEeccCCCeEEEEE-CCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRK-NGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      ..+....+..|+++.|.|.+.|.|. .+.|++ ++..+... .++...........|.|.++.. .|+|.|.|.+.|..|
T Consensus         5 v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~g   81 (92)
T cd04977           5 IVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQ-QQISVVQNDDVRSTLTIYNANI-EDAGIYKCVATDAKG   81 (92)
T ss_pred             EecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccC-CCEEEEeCCCCEEEEEEecCCc-ccCEEEEEEEEcCCC
Confidence            3455577889999999999999864 899997 45444332 3333332222335699999998 999999999999865


Q ss_pred             ceEeeEEEE
Q psy2442          94 DAVSAEASL  102 (111)
Q Consensus        94 ~~~~~~~~l  102 (111)
                      ......+.|
T Consensus        82 ~~~~~sv~l   90 (92)
T cd04977          82 TESEATVNL   90 (92)
T ss_pred             CcceeEEEE
Confidence            433445444

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.60  E-value=7.4e-14  Score=66.81  Aligned_cols=68  Identities=34%  Similarity=0.584  Sum_probs=54.5

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      |+++.|.|.+.+.|.|.+.|++++..+... .++...... ....|.|.++.. .|+|.|.|.+.|..|..
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~-~~~~~~~~~-~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~   68 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDS-ARVSITSEG-GYGTLTIRDVKE-SDQGAYTCEAINTRGMV   68 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCC-CCEEEEECC-CEEEEEECCCCh-HHCEEEEEEEEecCCEE
Confidence            678999999999999999999998877543 454443322 335699999998 99999999999998864

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.60  E-value=8.5e-14  Score=69.59  Aligned_cols=85  Identities=18%  Similarity=0.247  Sum_probs=63.6

Q ss_pred             ceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeC----CCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          19 NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF----PPGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      ...+..|..+.|.|.+.|.|.|.+.|+++|..+............    ......|.|.++.. .|.|.|.|.+.|..|.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~D~G~Ytc~A~N~~g~   90 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKE-EDSGLYTALAQNEDAV   90 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCH-HHCEEEEEEEEcCCce
Confidence            356778899999999999999999999999998643222111110    01234599999998 9999999999999987


Q ss_pred             eEeeEEEEEEe
Q psy2442          95 AVSAEASLTVY  105 (111)
Q Consensus        95 ~~~~~~~l~~~  105 (111)
                      . +..+.+.|.
T Consensus        91 ~-~~t~~l~V~  100 (101)
T cd05859          91 K-SYTFALQIQ  100 (101)
T ss_pred             E-EEEEEEEEE
Confidence            4 667766653

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.60  E-value=1.7e-13  Score=66.61  Aligned_cols=81  Identities=23%  Similarity=0.295  Sum_probs=59.8

Q ss_pred             CcEEEEEEEeccCCC--eEEEEECCeeccCCC--CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEE
Q psy2442          26 GITSFYCIARGDPIP--VIQWRKNGKRVSGTQ--SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEAS  101 (111)
Q Consensus        26 ~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~  101 (111)
                      +++.|.|.+.+.|.+  .+.|++++..+....  .++...........|.|.+++. .|+|.|.|.+.|..|.. +....
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~g~~-~~~~~   78 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQL-KHAGKYTCTAQTVVDSL-SASAD   78 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCH-HhCeeeEEEEecCCCcE-EEEEE
Confidence            467899999998877  568999998875321  1221111111334599999998 99999999999999875 78888


Q ss_pred             EEEecCC
Q psy2442         102 LTVYEGE  108 (111)
Q Consensus       102 l~~~~~~  108 (111)
                      |.|.++|
T Consensus        79 l~V~~pP   85 (85)
T cd04970          79 LIVRGPP   85 (85)
T ss_pred             EEEECCC
Confidence            8888775

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.59  E-value=7e-14  Score=65.72  Aligned_cols=68  Identities=29%  Similarity=0.413  Sum_probs=54.1

Q ss_pred             EEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442          29 SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        29 ~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      .|.|.+.|.|.|.+.|+++|..+... .++..     ....|.|.++.. .|+|.|.|.+.|..|.. ...+.+.+
T Consensus         2 ~l~c~v~g~P~p~v~W~k~g~~l~~~-~~~~~-----~~~~L~I~~v~~-~D~G~YtC~a~N~~g~~-~~~~~~~~   69 (71)
T cd04976           2 RLPVKVKAYPPPEIQWYKNGKLISEK-NRTKK-----SGHSLTIKDVTE-EDAGNYTVVLTNKQAKL-EKRLTFTL   69 (71)
T ss_pred             EEEeEEEEeCCCEEEEEECCEECCCC-CEEEc-----CCCEEEECcCCH-HHCEEEEEEEEcCCccE-EEEEEEEE
Confidence            68999999999999999999988643 33322     335599999998 99999999999998874 66666654

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.59  E-value=1e-13  Score=65.68  Aligned_cols=72  Identities=36%  Similarity=0.545  Sum_probs=54.6

Q ss_pred             EEEEEEEeccCCCeEEEEECCeeccC-CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442          28 TSFYCIARGDPIPVIQWRKNGKRVSG-TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        28 ~~l~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      ++|.|.+.|.|.|.+.|++++..+.. ...++...    ....|.+..+.. .|+|.|.|.+.|..|...+....|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~----~~g~L~i~~~~~-~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL----RSGALQIENSEE-SDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc----CCcEEEECCCCh-hhCEEEEEEEECCCCceEcccEEEEE
Confidence            36899999999999999999887753 22444443    233488999998 99999999999999875455555544

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.59  E-value=4.2e-14  Score=66.15  Aligned_cols=68  Identities=37%  Similarity=0.669  Sum_probs=53.8

Q ss_pred             EEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEE
Q psy2442          28 TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL  102 (111)
Q Consensus        28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l  102 (111)
                      +.|.|.+.|.|.|.+.|++++..+... .++...    ....|.|.++.. .|+|.|.|.+.|..|.. +..+.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~-~~~~~~----~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~-~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTES-GKFHIS----PEGYLAIRDVGV-ADQGRYECVARNTIGYA-SVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCC-CCEEEC----CCCEEEECcCCh-hhCEEEEEEEECCCCcE-EEEEEe
Confidence            368999999999999999999877543 444443    234599999998 99999999999999874 555544

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.59  E-value=6.1e-14  Score=67.61  Aligned_cols=78  Identities=24%  Similarity=0.427  Sum_probs=58.8

Q ss_pred             eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeE
Q psy2442          20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAE   99 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~   99 (111)
                      +....|+.+.|.|.+.+.|.|.+.|++++..+.... .....  . ....|.|.++.. .|+|.|.|.+.|..|.. ...
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~-~~~~~--~-~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~-~~~   77 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTE-IGESR--K-KKWTLSLKNLKP-EDSGKYTCHVSNRAGEI-NAT   77 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCc-cceec--C-ceEEEEEccCCh-hhCEEEEEEEEcCCccE-EEE
Confidence            456679999999999999999999999988764321 11111  1 234588999998 99999999999999874 666


Q ss_pred             EEEE
Q psy2442         100 ASLT  103 (111)
Q Consensus       100 ~~l~  103 (111)
                      +.|.
T Consensus        78 ~~v~   81 (82)
T cd05856          78 YKVD   81 (82)
T ss_pred             EEEe
Confidence            5553

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.59  E-value=5.8e-14  Score=66.01  Aligned_cols=70  Identities=31%  Similarity=0.522  Sum_probs=54.1

Q ss_pred             EEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442          28 TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      +.|.|.+.|.|.|.+.|++++..+...  +.....   ....|.|..+.. .|+|.|.|.+.|..|.. +..+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~--~~~~~~---~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~-~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPN--RTKKLN---NNKTLQLDNVLE-SDDGEYVCTAENSEGSA-RHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCC--ceeEEc---CCCEEEEcccCH-HhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence            368999999999999999998766432  222221   345699999998 99999999999999974 66666654

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.58  E-value=1.6e-13  Score=65.97  Aligned_cols=74  Identities=24%  Similarity=0.441  Sum_probs=56.0

Q ss_pred             EcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      ..+..+.+..|+.+.|.|.+.|.|.| .+.|++++..+...   ...     ....|.+..+   .|.|.|.|.+.|..|
T Consensus         3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~---~~~-----~~s~L~i~~~---~d~g~Y~C~A~N~~G   71 (81)
T cd05749           3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP---PAP-----SPSVLNVPGL---NETSKFSCEAHNAKG   71 (81)
T ss_pred             CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC---CCC-----CCCEEEEccc---cCCeEEEEEEEeccC
Confidence            35666788999999999999999999 79999999987531   111     2344777665   578999999999998


Q ss_pred             ceEeeE
Q psy2442          94 DAVSAE   99 (111)
Q Consensus        94 ~~~~~~   99 (111)
                      ...+..
T Consensus        72 ~~~s~~   77 (81)
T cd05749          72 VTTSRT   77 (81)
T ss_pred             cEEeee
Confidence            653333

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.58  E-value=1e-13  Score=65.70  Aligned_cols=72  Identities=36%  Similarity=0.659  Sum_probs=54.3

Q ss_pred             CCcEEEEEEEeccCCCeEEEEE-CCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442          25 GGITSFYCIARGDPIPVIQWRK-NGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT  103 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~  103 (111)
                      |+.+.|.|.+.+.|.|.+.|++ ++..+... .+....    ....|.|..+.. .|.|.|.|.+.|..|.. +..+.|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~-~~~~~~----~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~~-~~~~~l~   73 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNS-SRTLVY----DNGTLDILITTV-KDTGSFTCIASNAAGEA-TATVELH   73 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCC-CeEEEe----cCCEEEEEECCh-hhCEEEEEEEECCCCeE-EEEEEEE
Confidence            6789999999999999999997 45544322 333332    234588889998 99999999999999874 6666554

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>KOG4194|consensus

Probab=99.58  E-value=2.7e-14  Score=88.79  Aligned_cols=103  Identities=30%  Similarity=0.550  Sum_probs=86.8

Q ss_pred             ceeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCee-ccCCC-CceEEEeCCCCCeEEEEccCCCCC
Q psy2442           2 YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKR-VSGTQ-SRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus         2 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~-~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      .++|+|+..|.+...|.++....|+.+.+.|.+.|.|.|.+.|.+.|.. ++... .|.+...   ....+.|-++.. +
T Consensus       604 k~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmp---edd~f~Itnvk~-e  679 (873)
T KOG4194|consen  604 KAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMP---EDDVFFITNVKI-E  679 (873)
T ss_pred             eeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecC---CCCEEEEecccc-c
Confidence            4789999999999999999999999999999999999999999987665 55433 3444443   445588899998 9


Q ss_pred             CCeEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          80 DDAVYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        80 d~g~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      |.|.|.|.+.|..|.- +...++.|.+.|.
T Consensus       680 D~GiYtC~A~n~AG~i-sanAtL~V~e~p~  708 (873)
T KOG4194|consen  680 DQGIYTCTAQNVAGQI-SANATLTVLETPS  708 (873)
T ss_pred             ccceeEEeeeccccce-eeceEEEEecCCc
Confidence            9999999999999984 8889999988764

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.56  E-value=1.5e-13  Score=65.26  Aligned_cols=72  Identities=36%  Similarity=0.621  Sum_probs=53.4

Q ss_pred             EEEEEEEeccCCCeEEEEECCeec-c-CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442          28 TSFYCIARGDPIPVIQWRKNGKRV-S-GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        28 ~~l~c~~~~~~~~~~~w~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      +.|.|.+.|.|.|.+.|++++... . ....++....   ....|.|.++.. .|+|.|.|.+.|..|.. .....|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~-~D~G~Y~C~A~N~~G~~-~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMP---EDDVFFIVDVKI-EDTGVYSCTAQNTAGSI-SANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEec---CCCEEEEeeCCc-ccCEEEEEEEEcCCCEE-EeeEEEEE
Confidence            368999999999999999987642 2 1123333322   334589999998 99999999999999874 66666655

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.56  E-value=7.9e-13  Score=65.87  Aligned_cols=90  Identities=29%  Similarity=0.410  Sum_probs=64.9

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCC-CCceEEEeCC---CCCeEEEEccCCCCCC-CeE
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGT-QSRYMVQEFP---PGGSLLRIEPVRHARD-DAV   83 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~-~~~~~~~~~~---~~~~~l~~~~~~~~~d-~g~   83 (111)
                      +|.+ ..+....+..|+.+.|.|.+.+.|.| .+.|++++..+... ..++.+....   .....|.|..+.. .| .|.
T Consensus         2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~-~d~~G~   79 (98)
T cd05758           2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQE-SDFQTS   79 (98)
T ss_pred             CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccc-ccccee
Confidence            4444 34455678899999999999999998 69999999877543 2455544321   1124588999887 66 799


Q ss_pred             EEEEeeeCCCceEeeEEEE
Q psy2442          84 YECVAENGVGDAVSAEASL  102 (111)
Q Consensus        84 y~c~~~~~~~~~~~~~~~l  102 (111)
                      |.|.+.|..|.. ...+.|
T Consensus        80 Y~C~A~N~~G~~-~~~~~L   97 (98)
T cd05758          80 YNCTAWNSFGSG-TAIISL   97 (98)
T ss_pred             EEEEEEcCCCcc-cEEEEe
Confidence            999999999875 555443

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.56  E-value=1.4e-13  Score=64.38  Aligned_cols=68  Identities=38%  Similarity=0.659  Sum_probs=52.9

Q ss_pred             EEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442          28 TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT  103 (111)
Q Consensus        28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~  103 (111)
                      +.|.|.+.+.|.|.+.|++++..+..  .++...    ....|.|.++.. .|+|.|.|.+.|..|.. .....|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~--~~~~~~----~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~-~~~~~l~   68 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPK--GRAEIL----DDKSLKIRNVTA-GDEGSYTCEAENMVGKI-EASASLT   68 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCC--CcEEEe----eCCEEEECcCCh-hHCEEEEEEEEcCCCcE-EEEEEEE
Confidence            46899999999999999999776543  344443    234599999998 99999999999999874 6665554

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.54  E-value=3.5e-13  Score=63.07  Aligned_cols=65  Identities=23%  Similarity=0.358  Sum_probs=50.7

Q ss_pred             EEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEE
Q psy2442          29 SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL  102 (111)
Q Consensus        29 ~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l  102 (111)
                      .+.|.+.|.|.|.+.|++++..+... .+  ..    ....|.|..+.. .|.|.|.|.+.|..|.. .....+
T Consensus         2 ~~~c~v~G~P~P~v~W~k~g~~l~~~-~~--~~----~~~~L~I~~v~~-~D~G~YtC~a~N~~G~~-~~~~t~   66 (70)
T cd05864           2 KIPVKYYGYPPPEVKWYKNGQLIVLN-HT--FK----RGVHLTIYEVTE-KDAGNYTVVLTNPITKE-EQRHTF   66 (70)
T ss_pred             EEEeEEEEeCCCEEEEEECCEECCCC-CE--Ec----cCCEEEECcCCH-HHCEEEEEEEEECCCce-eeEEEE
Confidence            58899999999999999999988642 22  11    234589999998 99999999999999864 444433

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.53  E-value=3.5e-13  Score=63.26  Aligned_cols=70  Identities=36%  Similarity=0.586  Sum_probs=53.6

Q ss_pred             EEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442          28 TSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      +.|.|.+.|.|.|.+.|++.+..+...  +.....   ....|.|.++.. .|.|.|.|.+.|..|.. ...+.+.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~--~~~~~~---~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~-~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPAD--RTKFEN---FNKTLKIDNVSE-EDDGEYRCTASNSLGSA-RHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCC--ceeEec---CCCEEEECCCCH-HHCEEEEEEEEeCCceE-EEEEEEEE
Confidence            368999999999999999998776432  222211   334599999998 99999999999999874 66666654

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.52  E-value=1.2e-12  Score=62.96  Aligned_cols=73  Identities=22%  Similarity=0.325  Sum_probs=53.8

Q ss_pred             EEEEEEeccCCCeEEEEECCeeccCCCCceEE--Ee----CCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEE
Q psy2442          29 SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMV--QE----FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL  102 (111)
Q Consensus        29 ~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l  102 (111)
                      .+.|.+.|.|.|.+.|+++|..+... .+...  ..    .......|.|..+.. .|+|.|.|.+.|..|.. ...+.+
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~-~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~YtC~A~N~~G~~-~~~~~~   78 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNES-DYIRTEIHYEVTTPTEYHGCLQFDNPTH-VNNGNYTLVASNEYGQD-SKSISA   78 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCC-CceeEEEEeecccccccEEEEEECCCCc-ccCeEEEEEEEeCCCCe-eeEEEe
Confidence            36799999999999999999988644 22211  11    011234589999998 99999999999999985 666665


Q ss_pred             EE
Q psy2442         103 TV  104 (111)
Q Consensus       103 ~~  104 (111)
                      .+
T Consensus        79 ~~   80 (81)
T cd04971          79 HF   80 (81)
T ss_pred             ee
Confidence            43

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.52  E-value=1.1e-12  Score=61.33  Aligned_cols=67  Identities=31%  Similarity=0.674  Sum_probs=49.9

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEE
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEAS  101 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~  101 (111)
                      |+.+.|.|.+.|.|.|.+.|++++..+... .++..     ....|.+.++   .|.|.|.|.+.|..|.. .....
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~-~~~~~-----~~~~L~i~~~---~d~G~Y~C~A~N~~G~~-~~~a~   67 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKE-DEMPV-----GRNVLELTNI---YESANYTCVAISSLGMI-EATAQ   67 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCc-cceec-----CccEEEEecc---ccCeeEEEEEEeCCCEE-EEEEE
Confidence            678999999999999999999999887432 22221     2234777764   57899999999999863 55443

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.51  E-value=5.5e-13  Score=65.88  Aligned_cols=78  Identities=24%  Similarity=0.288  Sum_probs=58.2

Q ss_pred             ceeeecCCcEEEEEEEec-----cCCCeEEEEECCeeccCC---CCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          19 NQAVKAGGITSFYCIARG-----DPIPVIQWRKNGKRVSGT---QSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~-----~~~~~~~w~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      ...+.+|+.+.|.|...+     .|.+.+.|++++..+...   ..++..     ....|.|..+.. +|+|.|.|.+.|
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-----~~~~L~I~~~~~-~DsG~Y~C~~~N   81 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-----QKDLLWFLPAAL-EDSGLYTCVVRN   81 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-----cCCeEEEccCCc-ccCeEEEEEEcC
Confidence            346678999999999988     678899999998654321   122222     234588999998 999999999999


Q ss_pred             CCCceEeeEEEEE
Q psy2442          91 GVGDAVSAEASLT  103 (111)
Q Consensus        91 ~~~~~~~~~~~l~  103 (111)
                      ..|.. +..+.|.
T Consensus        82 ~~g~~-~~~~~L~   93 (94)
T cd05756          82 STYCM-KVSISLT   93 (94)
T ss_pred             CCccE-EEEEEEE
Confidence            88864 6666554

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.51  E-value=9.3e-13  Score=61.85  Aligned_cols=60  Identities=25%  Similarity=0.354  Sum_probs=47.9

Q ss_pred             EEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          29 SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        29 ~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      .|.|.+.|.|.|.+.|++++..+.....++..     ....|.|.++.. +|+|.|.|.+.|....
T Consensus         2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~-----~~~~L~I~~v~~-~D~G~YtC~a~~~~~~   61 (72)
T cd07702           2 RLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV-----DGYSLVIKDVTE-EDAGIYTILLGIKQYN   61 (72)
T ss_pred             eEEeeEEEcCCCeEEEEECCEECCCCCcEEEe-----CCCEEEECcCCH-HHCEEEEEEEEccccc
Confidence            58899999999999999999887643233332     233599999998 9999999999997543

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.51  E-value=2.1e-12  Score=61.44  Aligned_cols=72  Identities=35%  Similarity=0.573  Sum_probs=55.5

Q ss_pred             EEEEEEeccCCCeEEEEECCeeccCCC-CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          29 SFYCIARGDPIPVIQWRKNGKRVSGTQ-SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        29 ~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      .|.|.+.+.|.|.+.|++++..+.... .++....   ....|.|..+.. .|.|.|.|.+.|..|.. ...+.|.|.
T Consensus         2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~---~~~~l~I~~~~~-~D~G~Y~C~a~N~~G~~-~~~~~l~V~   74 (76)
T cd05736           2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIA---NGSELHISNVRY-EDTGAYTCIAKNEAGVD-EDISSLFVE   74 (76)
T ss_pred             EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeC---CCCEEEECcCCc-ccCEEEEEEEEcCCCCc-ceEEEEEEE
Confidence            689999999999999999998875431 2333321   334589999998 99999999999999875 666666654

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.51  E-value=1.4e-12  Score=62.26  Aligned_cols=71  Identities=20%  Similarity=0.395  Sum_probs=52.5

Q ss_pred             EEEEEeccCCCeEEEEECCeeccCCCCceE--EE--eCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEE
Q psy2442          30 FYCIARGDPIPVIQWRKNGKRVSGTQSRYM--VQ--EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLT  103 (111)
Q Consensus        30 l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~  103 (111)
                      +.|.+.|.|.|.+.|+++|..+... .+..  +.  ........|.+..+.. .|.|.|.|.+.|..|.. ...+.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~YtC~A~N~~G~~-~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNES-EYICTKIHVINNTEYHGCLQLDNPTH-LNNGIYTLVAKNEYGED-EKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCC-cceeeeeEeecccceEEEEEECCCCc-ccCEEEEEEEEcCCccc-ceEEEee
Confidence            6788999999999999999998643 2221  11  1111234589999998 99999999999999975 6666543

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.49  E-value=8e-13  Score=63.12  Aligned_cols=67  Identities=22%  Similarity=0.429  Sum_probs=52.4

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      |.+...|....+..|++++|.|.+.+.|.+ .+.|++++..+..            ....|.+.++ . .|+|.|.|.+.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~------------~~~~l~i~~~-~-~dsG~Y~C~a~   66 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET------------TTNSYRIRAA-N-NDSGEYRCQTQ   66 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec------------cCCeEEEeec-c-cCCEEeEEECC
Confidence            345566777789999999999999887754 6999999987632            2233777777 7 99999999998


Q ss_pred             eC
Q psy2442          90 NG   91 (111)
Q Consensus        90 ~~   91 (111)
                      |.
T Consensus        67 ~~   68 (78)
T cd05752          67 GS   68 (78)
T ss_pred             CC
Confidence            75

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.49  E-value=1.9e-12  Score=63.57  Aligned_cols=78  Identities=28%  Similarity=0.425  Sum_probs=53.5

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECC----eeccCC-CCceEEEeC------CCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNG----KRVSGT-QSRYMVQEF------PPGGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~----~~~~~~-~~~~~~~~~------~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      |+.+.|.|.+.+.|.|.+.|++.+    ..+... .........      ......|.|.++.. .|+|.|.|.+.|..|
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G   79 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSF-DDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEecccc-ccCcEEEEEeecccC
Confidence            678999999999999999999863    222111 111111110      01223588899998 999999999999999


Q ss_pred             ceEeeEEEEEE
Q psy2442          94 DAVSAEASLTV  104 (111)
Q Consensus        94 ~~~~~~~~l~~  104 (111)
                      .. .....|.|
T Consensus        80 ~~-~~sa~L~V   89 (90)
T cd04974          80 PS-HHSAWLTV   89 (90)
T ss_pred             cc-cCCEEEEe
Confidence            74 66666654

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.48  E-value=2.7e-12  Score=61.22  Aligned_cols=71  Identities=27%  Similarity=0.492  Sum_probs=48.4

Q ss_pred             EEEEEEEeccCCCeEEEEECCeeccCC-CCceEEEeCCCCCeEEEEccCCCC---CCCeEEEEEeeeCCCceEeeEEE
Q psy2442          28 TSFYCIARGDPIPVIQWRKNGKRVSGT-QSRYMVQEFPPGGSLLRIEPVRHA---RDDAVYECVAENGVGDAVSAEAS  101 (111)
Q Consensus        28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~---~d~g~y~c~~~~~~~~~~~~~~~  101 (111)
                      +.|.|.+.|.|.|.+.|++++..+... ..++....   ....|.+..+...   .|.|.|.|.+.|..|...+..+.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~---~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~   75 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKP---NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIV   75 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeC---CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEE
Confidence            468999999999999999999877322 12333322   2344666655420   37899999999999875444443

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>KOG3513|consensus

Probab=99.48  E-value=2.2e-12  Score=84.47  Aligned_cols=98  Identities=32%  Similarity=0.606  Sum_probs=82.2

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCC--CceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ--SRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .+|.|+.+|++.+.++...+..|+.+.+.|.+.|.|.|.+.|+++|..+....  .++.+.     ...|.|.+++. .|
T Consensus       324 ~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~-----~g~L~is~v~~-~d  397 (1051)
T KOG3513|consen  324 GHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKID-----DGTLIISNVQE-SD  397 (1051)
T ss_pred             EEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEe-----CCEEEEEeccc-cc
Confidence            57889999999999999999999999999999999999999999999886431  235553     34599999998 99


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          81 DAVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      +|.|.|.+.|..|.. .....|.|...
T Consensus       398 sg~YQC~A~Nk~G~i-~anA~L~V~a~  423 (1051)
T KOG3513|consen  398 SGVYQCIAENKYGTI-YANAELKVLAS  423 (1051)
T ss_pred             CeEEEeeeecccceE-eeeeEEEEEcc
Confidence            999999999999874 66777776543

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.47  E-value=2.1e-12  Score=62.14  Aligned_cols=74  Identities=30%  Similarity=0.463  Sum_probs=53.4

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCee----ccCCC---CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNGKR----VSGTQ---SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS   97 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~~~----~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~   97 (111)
                      |+.+.|.|.+.+.|.|.+.|++.+..    .....   .++...    ....|.|.++.. .|+|.|.|.+.|..|.. .
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~-~   74 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVT----NIGQLVIYNAQP-QDAGLYTCTARNSGGLL-R   74 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEc----cccEEEEccCCc-ccCEEEEEEEecCCceE-E
Confidence            67899999999999999999987321    11110   111111    234589999998 99999999999999874 7


Q ss_pred             eEEEEEE
Q psy2442          98 AEASLTV  104 (111)
Q Consensus        98 ~~~~l~~  104 (111)
                      ..+.|.|
T Consensus        75 ~~~~l~v   81 (81)
T cd05765          75 ANFPLSV   81 (81)
T ss_pred             EEEEEeC
Confidence            7776653

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.47  E-value=3.5e-12  Score=62.47  Aligned_cols=82  Identities=22%  Similarity=0.304  Sum_probs=59.2

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCC---CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ---SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      ++.+.+..|+.+.|.|...+ +.+.+.|++++..+....   .++...     ...|.|.++.. .|+|.|.|.+.+..+
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~-----~~~L~I~~~~~-~D~G~Y~C~a~~~~~   75 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT-----EDGLLIRSVSP-ADAGVYTCQSVEHGF   75 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc-----CCCEEEccCCH-HHCEEEEEEEecCcc
Confidence            34467889999999999876 777999999987764321   233222     22388999998 999999999987655


Q ss_pred             ceEeeEEEEEEe
Q psy2442          94 DAVSAEASLTVY  105 (111)
Q Consensus        94 ~~~~~~~~l~~~  105 (111)
                      ......+.+.|.
T Consensus        76 ~~~~~~~~l~V~   87 (89)
T cd04979          76 KQTLATYSLNVL   87 (89)
T ss_pred             ceeEeEEEEEEe
Confidence            434556666654

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.47  E-value=6.2e-12  Score=61.83  Aligned_cols=79  Identities=33%  Similarity=0.604  Sum_probs=55.4

Q ss_pred             CeeEEcCcceeee---cCCcEEEEEEEeccCCCeEEEEECCeeccC-CCCceEEEeCCCCCeEEEEccCC-CCCCCeEEE
Q psy2442          11 PEITLRPRNQAVK---AGGITSFYCIARGDPIPVIQWRKNGKRVSG-TQSRYMVQEFPPGGSLLRIEPVR-HARDDAVYE   85 (111)
Q Consensus        11 p~~~~~~~~~~~~---~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~-~~~d~g~y~   85 (111)
                      |.+...+..+.+.   .++.+.|.|.+.+.|.+.+.|++++..+.. ...++...     ...|.+.++. . .|+|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~-----~~~L~i~~~~~~-~d~G~Y~   75 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV-----GGNLVISNPSKA-KDAGRYQ   75 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE-----CCEEEEecCCcc-CCCEEEE
Confidence            4455555554433   346799999999999999999999988742 22333332     2336776654 4 7999999


Q ss_pred             EEeeeCCCce
Q psy2442          86 CVAENGVGDA   95 (111)
Q Consensus        86 c~~~~~~~~~   95 (111)
                      |.+.|..|..
T Consensus        76 C~a~N~~G~~   85 (91)
T cd04967          76 CLASNIVGTV   85 (91)
T ss_pred             EEEEcCCCEE
Confidence            9999998864

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.47  E-value=1.4e-11  Score=61.06  Aligned_cols=90  Identities=27%  Similarity=0.383  Sum_probs=65.8

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCC-CCceEEEeCC---CCCeEEEEccCCCCCC-CeE
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGT-QSRYMVQEFP---PGGSLLRIEPVRHARD-DAV   83 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~-~~~~~~~~~~---~~~~~l~~~~~~~~~d-~g~   83 (111)
                      ||.+ ..+....+..|+++.|.|.+.+.|.| .+.|...+..+... ..++.+....   +..+.|.|.++.. .| .|.
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~-~d~~g~   79 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIME-ADFQTH   79 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCcc-ccCCcE
Confidence            4554 56666788899999999999887777 67898887766443 3566655422   2345599999877 67 589


Q ss_pred             EEEEeeeCCCceEeeEEEE
Q psy2442          84 YECVAENGVGDAVSAEASL  102 (111)
Q Consensus        84 y~c~~~~~~~~~~~~~~~l  102 (111)
                      |.|.+.|.+|.. ...+.|
T Consensus        80 Y~C~a~N~~G~d-~~~i~L   97 (98)
T cd05898          80 YNCTAWNSFGSG-TAIIQL   97 (98)
T ss_pred             EEEEEEeCCccc-eEEEEe
Confidence            999999999975 555543

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.47  E-value=2.1e-12  Score=61.89  Aligned_cols=71  Identities=30%  Similarity=0.463  Sum_probs=50.3

Q ss_pred             EEEEEEEeccCCCeEEEEECCeeccC-------CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEE
Q psy2442          28 TSFYCIARGDPIPVIQWRKNGKRVSG-------TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEA  100 (111)
Q Consensus        28 ~~l~c~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~  100 (111)
                      ++|.|.+.|.|.|.+.|++.+.....       ...++...    ....|.|..+.. .|+|.|.|.+.|..|...+...
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~----~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~s~~~   75 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL----SNGSLLIKHVLE-EDSGYYLCKVSNDVGADASKSM   75 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe----cCCeEEECcCCc-ccCEEEEEEEEeCCCCCCceEE
Confidence            46899999999999999986432110       12333332    234588999998 9999999999999886544454


Q ss_pred             EEE
Q psy2442         101 SLT  103 (111)
Q Consensus       101 ~l~  103 (111)
                      .|.
T Consensus        76 ~l~   78 (79)
T cd05734          76 VLT   78 (79)
T ss_pred             EEe
Confidence            443

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.46  E-value=9.3e-12  Score=60.27  Aligned_cols=81  Identities=30%  Similarity=0.459  Sum_probs=58.8

Q ss_pred             eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeE
Q psy2442          20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAE   99 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~   99 (111)
                      +.+..|+.+.|.|.+.+.|.+.+.|++++..+... ..+...........|.+.++.. .|.|.|.|.+.|..|.. ...
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~C~~~n~~g~~-~~~   80 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKE-HRIGGYKVRKKKWTLILESVVP-SDSGKYTCIVENKYGSI-NHT   80 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECccc-CceeEEEccCcEEEEEEeECCc-ccCEEEEEEEEECCceE-EEE
Confidence            45667999999999999888899999998876532 2222111111234588889998 99999999999988864 655


Q ss_pred             EEEE
Q psy2442         100 ASLT  103 (111)
Q Consensus       100 ~~l~  103 (111)
                      +.|.
T Consensus        81 ~~l~   84 (85)
T cd05729          81 YKVD   84 (85)
T ss_pred             EEEe
Confidence            5553

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.45  E-value=7.5e-12  Score=61.91  Aligned_cols=72  Identities=18%  Similarity=0.393  Sum_probs=54.2

Q ss_pred             cceeeecCCcEEEEEEEeccCCCeEEEEECCeecc-------CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS-------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      .+..+..|+++.|.|.+.+.+.+.+.|++.+..+.       ....++...........|.|.++.. +|.|.|.|.+..
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~-~D~G~YtC~~~t   83 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQL-SDEGEYTCSIFT   83 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCc-ccCEEEEEEEEe
Confidence            45678899999999999999999999998775321       1124444333222335699999999 999999999876

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.45  E-value=7.7e-12  Score=59.64  Aligned_cols=70  Identities=29%  Similarity=0.562  Sum_probs=48.4

Q ss_pred             EEEEEEEeccCCCeEEEEECCeecc-CCCCceEEEeCCCCCeEEEEccCC---CCCCCeEEEEEeeeCCCceEeeEE
Q psy2442          28 TSFYCIARGDPIPVIQWRKNGKRVS-GTQSRYMVQEFPPGGSLLRIEPVR---HARDDAVYECVAENGVGDAVSAEA  100 (111)
Q Consensus        28 ~~l~c~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~---~~~d~g~y~c~~~~~~~~~~~~~~  100 (111)
                      +.|.|.+.|.|.|.+.|++++..+. ....++....   ....|.+..+.   ...|.|.|.|.+.|..|...+..+
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~---~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~   74 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR---RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKI   74 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeC---CCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEE
Confidence            4689999999999999999998763 2224444322   23447776543   203689999999999987544443

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.45  E-value=3.6e-12  Score=60.80  Aligned_cols=69  Identities=28%  Similarity=0.577  Sum_probs=48.8

Q ss_pred             EEEEEEEeccCCCeEEEEECCeeccCC-CCceEEEeCCCCCeEEEEccCC----CCCCCeEEEEEeeeCCCceEeeEE
Q psy2442          28 TSFYCIARGDPIPVIQWRKNGKRVSGT-QSRYMVQEFPPGGSLLRIEPVR----HARDDAVYECVAENGVGDAVSAEA  100 (111)
Q Consensus        28 ~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~----~~~d~g~y~c~~~~~~~~~~~~~~  100 (111)
                      +.|.|.+.|.|.|.+.|++++..+... ..++....   ....|.+..+.    . .|+|.|.|.+.|..|...+..+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~---~~g~L~i~~~~~~~~~-~d~G~Y~C~A~N~~G~~~s~~~   74 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKP---DSGTLVIDNMNGGRAE-DYEGEYQCYASNELGTAISNEI   74 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeC---CCCEEEEeccCCCCCc-CCCEEEEEEEEcCCCcEEcccc
Confidence            468999999999999999999887432 23333322   23447777653    3 5899999999999987544343

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.45  E-value=7.1e-12  Score=61.49  Aligned_cols=78  Identities=29%  Similarity=0.457  Sum_probs=53.7

Q ss_pred             CCcEEEEEEEeccCCCeEEEEEC----CeeccCCC-CceEEEeCC------CCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKN----GKRVSGTQ-SRYMVQEFP------PGGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~----~~~~~~~~-~~~~~~~~~------~~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      |+.+.|.|.+.+.|.|.+.|++.    +..+.... .........      .....|.|.++.. .|+|.|.|.+.|..|
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G   79 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTF-EDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCH-HHCEEEEEEEEeCCC
Confidence            67899999999999999999984    33332111 111111100      0124599999998 999999999999998


Q ss_pred             ceEeeEEEEEE
Q psy2442          94 DAVSAEASLTV  104 (111)
Q Consensus        94 ~~~~~~~~l~~  104 (111)
                      .. .....|.|
T Consensus        80 ~~-~~~a~L~V   89 (90)
T cd05858          80 IS-HHSAWLTV   89 (90)
T ss_pred             cc-cceEEEEE
Confidence            75 56665554

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.44  E-value=1.1e-11  Score=60.11  Aligned_cols=80  Identities=21%  Similarity=0.347  Sum_probs=54.3

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCeeccCCCCc-eEEE-eCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC-ceEeeEEE
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSR-YMVQ-EFPPGGSLLRIEPVRHARDDAVYECVAENGVG-DAVSAEAS  101 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~-~~~~~~~~  101 (111)
                      |++++|.|.+.+.+.+.+.|+..+......... .... ........|.|.+++. .|+|.|.|.+.|..+ ......+.
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATV-EDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCc-CCCEEEEEEEEECccCcceeEEEE
Confidence            688999999999888899999876643221111 0111 0011234599999998 999999999998764 22366667


Q ss_pred             EEEe
Q psy2442         102 LTVY  105 (111)
Q Consensus       102 l~~~  105 (111)
                      |.|.
T Consensus        80 i~V~   83 (84)
T cd05861          80 ITVH   83 (84)
T ss_pred             EEEe
Confidence            7664

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.44  E-value=5.2e-12  Score=59.86  Aligned_cols=66  Identities=26%  Similarity=0.452  Sum_probs=49.6

Q ss_pred             EEEEEEEec-cCCCeEEEEECCeeccCCCCc--eEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442          28 TSFYCIARG-DPIPVIQWRKNGKRVSGTQSR--YMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        28 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      +.|.|.+.+ .|.+.+.|++++..+......  +.... ......|.|..+.. .|.|.|.|.+.|..|..
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~-~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~   69 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRN-KKKNSELQINKAKL-ADSGEYTCVVENILGND   69 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEe-cCceEEEEEccCCc-ccCeEEEEEEEEcCCce
Confidence            468999999 898999999999887643211  11221 11345589999998 99999999999999864

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.43  E-value=1.1e-11  Score=60.15  Aligned_cols=69  Identities=20%  Similarity=0.467  Sum_probs=54.4

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      |....+..|+++.|.|...+ +.+.+.|+++|..+.....++.+.    . ..|.|.+++. .|+|.|.|.+.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~----~-~~L~I~nv~~-~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY----R-DGLLIFNASE-ADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE----C-CcEEEeCCCH-HHCEEEEEEEEecc
Confidence            45567889999999999754 567899999999987543455443    2 2388999998 99999999998764

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.43  E-value=7.8e-12  Score=60.71  Aligned_cols=76  Identities=29%  Similarity=0.509  Sum_probs=56.8

Q ss_pred             EcCcceeeecCCcEEEEEEEec-cCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          15 LRPRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      ..+..+.+..|++++|.|...+ .+.+.+.|++.+..+..   +.  ..   ....|.|..+.. +|+|.|.|.+.|..|
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~---~~--~~---~~~~L~I~~v~~-~DsG~Y~C~a~n~~g   76 (85)
T cd05754           6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS---RA--MD---FNGILTIRNVQL-SDAGTYVCTGSNMLD   76 (85)
T ss_pred             cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC---cc--cc---cCCEEEECCCCH-HHCEEEEEEEeccCC
Confidence            3455668889999999999864 67779999998765432   11  11   234599999998 999999999999887


Q ss_pred             ceEeeEE
Q psy2442          94 DAVSAEA  100 (111)
Q Consensus        94 ~~~~~~~  100 (111)
                      .. ....
T Consensus        77 ~~-~~~~   82 (85)
T cd05754          77 TD-EATA   82 (85)
T ss_pred             eE-eEEE
Confidence            64 4433

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.39  E-value=1.1e-11  Score=59.94  Aligned_cols=73  Identities=23%  Similarity=0.312  Sum_probs=53.3

Q ss_pred             eeeecCCcEEEEEEEec-cCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEee
Q psy2442          20 QAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSA   98 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~   98 (111)
                      ..+.+|+.++|.|.... .+...+.|++++..+...  .        ....|.|..+.. +|+|.|.|.+.+..+...+.
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--~--------~~~~l~I~~~~~-~dsG~Y~C~~~~~~~~~~s~   77 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--H--------SNSNLSIPQATL-SDSGSYHCSGIIGSYDYSSE   77 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--C--------CCceEEECccCH-HHCEEEEEEEEeCCceecCC
Confidence            36789999999999754 455579999998765321  0        234488999998 99999999999987643344


Q ss_pred             EEEEE
Q psy2442          99 EASLT  103 (111)
Q Consensus        99 ~~~l~  103 (111)
                      .+.|.
T Consensus        78 ~~~i~   82 (83)
T cd05753          78 PVSIT   82 (83)
T ss_pred             CEEEE
Confidence            44443

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.38  E-value=5.5e-11  Score=58.88  Aligned_cols=73  Identities=18%  Similarity=0.277  Sum_probs=53.5

Q ss_pred             cceeeecCCcEEEEEEEeccCCCeEEEEECCeec-------cCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV-------SGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      +++.+.+|+++.|.|...+.+.+.+.|++.+...       .....++...........|.|.++.. +|+|.|.|.+..
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-~DsG~Y~C~~~t   83 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSL-SDEGQYTCSLFT   83 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCc-ccCEEEEEEeEe
Confidence            4578899999999999999998999998643221       11224555432222345699999998 999999999887


Q ss_pred             C
Q psy2442          91 G   91 (111)
Q Consensus        91 ~   91 (111)
                      .
T Consensus        84 ~   84 (95)
T cd07701          84 M   84 (95)
T ss_pred             e
Confidence            4

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.36  E-value=1.9e-11  Score=59.20  Aligned_cols=78  Identities=23%  Similarity=0.354  Sum_probs=53.3

Q ss_pred             CCcEEEEEEEecc--CCCeEEEEECCeeccCCCC---ceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeE
Q psy2442          25 GGITSFYCIARGD--PIPVIQWRKNGKRVSGTQS---RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAE   99 (111)
Q Consensus        25 g~~~~l~c~~~~~--~~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~   99 (111)
                      |+++.|.|.+.+.  +.+.+.|...+........   +............|.|.+++. .|+|.|.|.+.|..+.. +..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~DsG~Y~C~a~n~~~~~-~~s   78 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATL-KDSGTYTCAASSGTMDQ-KES   78 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCCh-hhCEEEEEEEccCCCce-EEE
Confidence            6789999999998  7779999887665432100   100000001234599999998 99999999999998764 555


Q ss_pred             EEEEE
Q psy2442         100 ASLTV  104 (111)
Q Consensus       100 ~~l~~  104 (111)
                      ..+.+
T Consensus        79 ~~v~v   83 (84)
T cd05742          79 TKVNI   83 (84)
T ss_pred             EEEEE
Confidence            55543

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>KOG3513|consensus

Probab=99.35  E-value=2.3e-11  Score=79.83  Aligned_cols=99  Identities=27%  Similarity=0.506  Sum_probs=77.0

Q ss_pred             ceeEEecC-CCeeEEcCcc--eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCC
Q psy2442           2 YRKVRFLD-PPEITLRPRN--QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHA   78 (111)
Q Consensus         2 ~~~l~v~~-~p~~~~~~~~--~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (111)
                      .|.|.|.. +|.+...+..  +.+..|.++.+.|...+.|.+.+.|.+++..+ ....|+.+.    ....|.|.++++ 
T Consensus       415 nA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~-~~~~r~~i~----edGtL~I~n~t~-  488 (1051)
T KOG3513|consen  415 NAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKL-LQSGRIRIL----EDGTLEISNVTR-  488 (1051)
T ss_pred             eeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCccc-ccCceEEEC----CCCcEEecccCc-
Confidence            36677764 4776655433  35668999999999999999999999998843 344777776    345599999999 


Q ss_pred             CCCeEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          79 RDDAVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        79 ~d~g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      .|+|.|.|.+.|.+|.. .....|.|..+
T Consensus       489 ~DaG~YtC~A~N~~G~a-~~~~~L~Vkd~  516 (1051)
T KOG3513|consen  489 SDAGKYTCVAENKLGKA-ESTGNLIVKDA  516 (1051)
T ss_pred             ccCcEEEEEEEcccCcc-ceEEEEEEecC
Confidence            99999999999999985 66677766544

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.33  E-value=7.8e-11  Score=56.01  Aligned_cols=66  Identities=21%  Similarity=0.453  Sum_probs=47.5

Q ss_pred             EEEEEEEec-cCCCeEEEEECCeeccCC---CCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442          28 TSFYCIARG-DPIPVIQWRKNGKRVSGT---QSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        28 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      +.|.|.+.+ .|.+.+.|++++..+...   ..++.... ......|.|.++.. .|+|.|.|.+.|..|..
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~-~~~~~~L~I~~~~~-~DsG~Y~C~a~N~~g~~   70 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRK-KKKSSELQISKASL-ADNGEYKCMVSSKLGND   70 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEe-CCcEEEEEECcCCc-ccCEEEEEEEEeCCCce
Confidence            468999764 577799999998887532   12222222 11335589999998 99999999999998863

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.29  E-value=2.7e-10  Score=56.40  Aligned_cols=74  Identities=18%  Similarity=0.362  Sum_probs=52.1

Q ss_pred             cceeeecCCcEEEEEEEeccCCCeEEEEECCeec---c----CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV---S----GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~---~----~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      +.+.+..|++++|.|...+.+.+.+.|++.+...   .    ....++...........|.|.+++. .|+|.|.|.+.+
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~~   83 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSL-SDEGRYTCSLYT   83 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCc-ccCEEEEEEEec
Confidence            4467889999999999988777899998643221   0    1124554432221334589999998 999999999887


Q ss_pred             CC
Q psy2442          91 GV   92 (111)
Q Consensus        91 ~~   92 (111)
                      ..
T Consensus        84 ~~   85 (95)
T cd05717          84 MP   85 (95)
T ss_pred             CC
Confidence            54

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.28  E-value=1.6e-10  Score=52.46  Aligned_cols=63  Identities=40%  Similarity=0.726  Sum_probs=48.0

Q ss_pred             cCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          24 AGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      .|+++.|.|...+.+.+.+.|++++..+..   ......   ....|.+.++.. .|.|.|.|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~---~~~~~~---~~~~L~i~~~~~-~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE---SNRLSA---SGSTLTIKSVSL-EDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC---CCEEec---CCcEEEEeeCCc-ccCEEEEEEEecCCC
Confidence            478899999988888889999998887751   111211   344588999998 999999999987643

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.27  E-value=4.9e-11  Score=58.73  Aligned_cols=72  Identities=18%  Similarity=0.154  Sum_probs=55.9

Q ss_pred             CcceeeecCCcEEEEEE-EeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe-EEEEEeeeCCC
Q psy2442          17 PRNQAVKAGGITSFYCI-ARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA-VYECVAENGVG   93 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g-~y~c~~~~~~~   93 (111)
                      .+.+.+.+|+.+.|.|. ..+.|.|.+.|+..+......+.|+...    ....|.|.++.. .|.| .|.|.+.|...
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~----~~GnL~fs~v~~-~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG----QNGNLYFANVEE-QDSHPDYICHAHFPGL   83 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC----CCceEEEEEEeh-hhCCCCeEEEEEcccc
Confidence            35578889999999997 6899999999998765543334555443    235599999998 9999 79999998753

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.25  E-value=1.2e-10  Score=57.41  Aligned_cols=72  Identities=21%  Similarity=0.248  Sum_probs=53.5

Q ss_pred             cceeeecCCcEEEEEE-EeccCCCeEEEEECCeecc-CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          18 RNQAVKAGGITSFYCI-ARGDPIPVIQWRKNGKRVS-GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      ....+.+|+.+.|.|. ..+.|.+.+.|++++.... ..+.+.....   ....|.+.++.. .|+|.|.|.+.|...
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~---~~G~L~fs~v~~-~D~g~Y~C~A~n~~~   84 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ---TNGNLYIAKVEA-SDRGNYSCFVSSPSS   84 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC---CCCcEEEeecCH-hhCceeEEEEEeccc
Confidence            3456888999999997 5677888999999976542 1223333322   234599999998 999999999999764

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>KOG4221|consensus

Probab=99.24  E-value=4.1e-10  Score=74.84  Aligned_cols=101  Identities=29%  Similarity=0.491  Sum_probs=73.7

Q ss_pred             eeEEecCCC------eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCC
Q psy2442           3 RKVRFLDPP------EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVR   76 (111)
Q Consensus         3 ~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   76 (111)
                      +.|+|...+      .|...+....+..|+.++|.|.+.+.+.|.+.|.+++..+.-.+.++.+.    ....|.+.+++
T Consensus       224 a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~----g~~slliS~a~  299 (1381)
T KOG4221|consen  224 AELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLV----GGSSLLISNAT  299 (1381)
T ss_pred             eEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEe----cccceEEeccc
Confidence            455555332      34455666788899999999999999999999999999987654455444    34558899999


Q ss_pred             CCCCCeEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          77 HARDDAVYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      . .|+|.|.|.+.|.-.. ......+.|..+|.
T Consensus       300 ~-~dSg~YtC~Atn~~D~-idasaev~V~a~P~  330 (1381)
T KOG4221|consen  300 D-DDSGKYTCRATNTNDS-IDASAEVTVLAPPG  330 (1381)
T ss_pred             c-ccCceEEEEecCCCcc-cccceEEEEEcCCC
Confidence            8 9999999999984332 13444555555553

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.24  E-value=4.9e-10  Score=53.47  Aligned_cols=79  Identities=34%  Similarity=0.648  Sum_probs=55.4

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      |.+...+  ..+..|+.+.|.|...+.+...+.|++++..+...           ... +.+..+.. .|.|.|.|.+.+
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-----------~~~-~~~~~~~~-~~~g~y~C~~~~   66 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS-----------QNG-LFIPNVSP-EDSGNYTCRASN   66 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE-----------SSE-EEESSEEG-GGTEEEEEEEEE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee-----------eee-eeeeeecc-ccCEEEEEEEEe
Confidence            4444334  45788999999999998888899999987665421           111 55566776 899999999998


Q ss_pred             CCCceEeeEEEEEE
Q psy2442          91 GVGDAVSAEASLTV  104 (111)
Q Consensus        91 ~~~~~~~~~~~l~~  104 (111)
                      ..+...+..+.|.|
T Consensus        67 ~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   67 GSGSNTSTSVNVTV   80 (80)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCCeEeeeEEeeC
Confidence            65443355555543

...

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.23  E-value=1.6e-09  Score=53.53  Aligned_cols=73  Identities=18%  Similarity=0.292  Sum_probs=54.8

Q ss_pred             cceeeecCCcEEEEEEEeccCCCeEEEEECCeecc-------CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS-------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      +++.+..|+++.|.|.........+.|++.+..+.       ....|+......+....|.|..++. .|+|.|.|.+..
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~-~D~G~Y~Cqv~t   83 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSL-SDEGRYFCQLYT   83 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCc-ccCEEEEEEEEc
Confidence            34688899999999999887777788987664431       2346776654333445699999998 999999999875


Q ss_pred             C
Q psy2442          91 G   91 (111)
Q Consensus        91 ~   91 (111)
                      .
T Consensus        84 ~   84 (95)
T cd05881          84 D   84 (95)
T ss_pred             c
Confidence            3

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.22  E-value=5.6e-10  Score=54.92  Aligned_cols=73  Identities=23%  Similarity=0.339  Sum_probs=53.5

Q ss_pred             eeeecCCcEEEEEEEecc-----CCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          20 QAVKAGGITSFYCIARGD-----PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      ..+..|+...|.|...+.     +.|.+.|++++..+.... + ...    ....|.|..+.. .|+|.|.|.+.|..+.
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~-~-~~~----~~~~L~I~~v~~-~DsG~YtC~~~n~~~~   77 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDR-K-RFV----KGSKLLIQNVTE-EDAGNYTCKLTFTHNG   77 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCc-c-EEe----cCCEEEEeeCCh-hhCEEEEEEEEecCCC
Confidence            356689999999986432     467999999999886532 2 221    233489999998 9999999999998765


Q ss_pred             eEeeEE
Q psy2442          95 AVSAEA  100 (111)
Q Consensus        95 ~~~~~~  100 (111)
                      . ...+
T Consensus        78 ~-~~~~   82 (92)
T cd05757          78 K-QYNV   82 (92)
T ss_pred             E-EEEE
Confidence            3 4443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>smart00409 IG Immunoglobulin

Probab=99.20  E-value=7.3e-09  Score=49.59  Aligned_cols=82  Identities=34%  Similarity=0.581  Sum_probs=59.3

Q ss_pred             ceeeecCCcEEEEEEEeccCCCeEEEEEC-CeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442          19 NQAVKAGGITSFYCIARGDPIPVIQWRKN-GKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS   97 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~   97 (111)
                      .+.+..|+.+.|.|...+.+.+.+.|++. +..+.. ..++...... ....|.+..+.. .|.|.|.|.+.+..+.. .
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~-~~~~~~~~~~-~~~~l~i~~~~~-~d~G~Y~C~v~~~~~~~-~   78 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAE-SGRFSVSRSG-SNSTLTISNVTP-EDSGTYTCAATNSSGSA-S   78 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCC-CCcEEEEEcC-CeeEEEEEeecc-ccCeEEEEEEEcCCCeE-E
Confidence            35677899999999998887779999998 666542 2444444322 235589999998 99999999999876653 4


Q ss_pred             eEEEEEE
Q psy2442          98 AEASLTV  104 (111)
Q Consensus        98 ~~~~l~~  104 (111)
                      ..+.|.|
T Consensus        79 ~~~~l~V   85 (86)
T smart00409       79 STTTLTV   85 (86)
T ss_pred             EEEEEEE
Confidence            4455543

>smart00410 IG_like Immunoglobulin like

Probab=99.20  E-value=7.3e-09  Score=49.59  Aligned_cols=82  Identities=34%  Similarity=0.581  Sum_probs=59.3

Q ss_pred             ceeeecCCcEEEEEEEeccCCCeEEEEEC-CeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442          19 NQAVKAGGITSFYCIARGDPIPVIQWRKN-GKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS   97 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~   97 (111)
                      .+.+..|+.+.|.|...+.+.+.+.|++. +..+.. ..++...... ....|.+..+.. .|.|.|.|.+.+..+.. .
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~-~~~~~~~~~~-~~~~l~i~~~~~-~d~G~Y~C~v~~~~~~~-~   78 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAE-SGRFSVSRSG-SNSTLTISNVTP-EDSGTYTCAATNSSGSA-S   78 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCC-CCcEEEEEcC-CeeEEEEEeecc-ccCeEEEEEEEcCCCeE-E
Confidence            35677899999999998887779999998 666542 2444444322 235589999998 99999999999876653 4


Q ss_pred             eEEEEEE
Q psy2442          98 AEASLTV  104 (111)
Q Consensus        98 ~~~~l~~  104 (111)
                      ..+.|.|
T Consensus        79 ~~~~l~V   85 (86)
T smart00410       79 STTTLTV   85 (86)
T ss_pred             EEEEEEE
Confidence            4455543

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.18  E-value=1.9e-09  Score=52.93  Aligned_cols=79  Identities=20%  Similarity=0.311  Sum_probs=52.9

Q ss_pred             eeeecCCcEEEEEEEeccCCCeEEEEECCe--eccC---CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee-CCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIPVIQWRKNGK--RVSG---TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN-GVG   93 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~-~~~   93 (111)
                      +....|+++.|.|.. +.|.+.+.|++.+.  ....   ...++..     ....|.|.++.. .|+|.|.|.+.+ ..+
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-----~~~~L~I~~~~~-~DsG~Y~C~a~~~~~~   78 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH-----TERGLLLRSLQR-SDAGVYTCTAVEHSFS   78 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE-----ecCeEEEeeCCh-hHCEEEEEEEEccCCe
Confidence            456789999999996 47778999998432  2111   1123332     223388999998 999999999975 444


Q ss_pred             ceEeeEEEEEEec
Q psy2442          94 DAVSAEASLTVYE  106 (111)
Q Consensus        94 ~~~~~~~~l~~~~  106 (111)
                      .. ...+.|.|.+
T Consensus        79 ~~-~~~~~l~v~~   90 (91)
T cd05871          79 QT-LAKYTLHVIE   90 (91)
T ss_pred             EE-EEEEEEEEec
Confidence            33 4466666643

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.14  E-value=5.4e-09  Score=59.39  Aligned_cols=68  Identities=24%  Similarity=0.357  Sum_probs=52.5

Q ss_pred             eeeecCCcEEEEEEEec-----cCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          20 QAVKAGGITSFYCIARG-----DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ..+..|+.+.|.|...+     .|.|.+.|++++..+... .++....   ....|.|.++.. .|+|.|.|.+....
T Consensus       139 ~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~-~r~~~~~---~~~~L~I~~V~~-~DsG~YtC~a~~~~  211 (227)
T PHA02826        139 YQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYT-DRIQLRN---NNSTLVIKSATH-DDSGIYTCNLRFNK  211 (227)
T ss_pred             ceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCC-CCEEEeC---CCCEEEECcCCH-HhCEEEEEEEEEeE
Confidence            45678999999999753     356799999999988643 4554432   334699999998 99999999988753

>KOG4222|consensus

Probab=99.14  E-value=1.5e-10  Score=76.38  Aligned_cols=101  Identities=34%  Similarity=0.573  Sum_probs=83.9

Q ss_pred             ceeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           2 YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         2 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      .++|.|+.+|.+...++...+..|..+.++|.+.|.|.|.+.|.+.+..+..  .++.+..   ....+.+.+... .|+
T Consensus       217 ~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~--~ry~i~~---d~qtl~i~r~tp-~de  290 (1281)
T KOG4222|consen  217 PARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPR--SRYSILD---DTQTLRIDRVTP-TDE  290 (1281)
T ss_pred             cceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCc--cceeeee---ccccccccccCC-Ccc
Confidence            4789999999999999999999999999999999999999999997777764  4555543   334588888887 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      |.|.|.+.|..|.. ...-.+.|..+|+
T Consensus       291 g~y~C~a~n~vG~l-~asa~ltV~apP~  317 (1281)
T KOG4222|consen  291 GTYVCPAENLVGGL-EASATLTVQAPPS  317 (1281)
T ss_pred             cceeeecccccccc-ccccceEEecCcc
Confidence            99999999998874 6677777777664

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.13  E-value=1.1e-09  Score=53.97  Aligned_cols=74  Identities=19%  Similarity=0.324  Sum_probs=50.4

Q ss_pred             eeeecCCcEEEEEEEeccCCCeEEEEECCeec-cCC------------CCceEEEe--CCCCCeEEEEccCCCCCCCeEE
Q psy2442          20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRV-SGT------------QSRYMVQE--FPPGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~-~~~------------~~~~~~~~--~~~~~~~l~~~~~~~~~d~g~y   84 (111)
                      +.+..|++++|.|...+.+.+.+.|++.++.. ...            ..++....  .......|.|.++.. +|+|.|
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~-sDsgtY   80 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKI-EDSDTY   80 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCH-HHCEEE
Confidence            35678999999999988888899999665322 111            11221111  011224599999998 999999


Q ss_pred             EEEeeeCCCc
Q psy2442          85 ECVAENGVGD   94 (111)
Q Consensus        85 ~c~~~~~~~~   94 (111)
                      .|.+.|..+.
T Consensus        81 ~C~v~~~~~~   90 (94)
T cd07690          81 ICEVEDKKEE   90 (94)
T ss_pred             EEEECCccce
Confidence            9999886543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.12  E-value=2.9e-09  Score=51.78  Aligned_cols=79  Identities=30%  Similarity=0.332  Sum_probs=51.3

Q ss_pred             CCcEEEEEEEeccCCC--eEEEEECCeeccCC--CC--ceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEee
Q psy2442          25 GGITSFYCIARGDPIP--VIQWRKNGKRVSGT--QS--RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSA   98 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~--~~--~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~   98 (111)
                      |+++.|.|.+.+.+.+  .+.|...+......  ..  +............|.|.++.. .|+|.|.|.+.|..+.. ..
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~DsG~Y~C~a~n~~~~~-~~   78 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTL-SDLGRYTCTASSGQMIA-KN   78 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCc-ccCEEEEEEEeecceEe-cc
Confidence            6789999999876544  77998776543110  01  111100001234599999998 99999999999987753 55


Q ss_pred             EEEEEEe
Q psy2442          99 EASLTVY  105 (111)
Q Consensus        99 ~~~l~~~  105 (111)
                      ...|.|.
T Consensus        79 ~t~~~V~   85 (86)
T cd05862          79 STIVIVH   85 (86)
T ss_pred             cEEEEEe
Confidence            6666554

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.09  E-value=4.4e-10  Score=51.57  Aligned_cols=62  Identities=27%  Similarity=0.485  Sum_probs=42.8

Q ss_pred             CCcEEEEEEE-eccCCCeEEEEECCeeccCCCCceEEEeCCCCC-eEEEEccCCCCCCCeEEEEEe
Q psy2442          25 GGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG-SLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        25 g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      |+++.|.|.+ .+.+...+.|++++...... ............ ..|.|.++.. .|+|.|.|.+
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEG-STTNRSTNSVSSTSRLTISNVTP-EDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEE-EEEEEEETTTEEEEEEEESSCTG-GGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCc-ceeEeecccceeeeEEEEccCCH-HHCEEEEEEC
Confidence            7889999999 66677799999988765432 111111111011 1289999998 9999999975

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>KOG4194|consensus

Probab=99.06  E-value=1.9e-09  Score=67.95  Aligned_cols=96  Identities=25%  Similarity=0.470  Sum_probs=73.2

Q ss_pred             ceeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCC-CeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           2 YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPI-PVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         2 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .|.|.|...|.+..+..+..+..|+++.+.|.+.+.+. |.+.|+++++.+.-. ++.....   ....+.+.+... .|
T Consensus       698 nAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t-~rh~f~d---~dQllvv~~~~~-~d  772 (873)
T KOG4194|consen  698 NATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILIT-ERHTFPD---GDQLLVVKENLV-ED  772 (873)
T ss_pred             ceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEe-ecccCCC---CCeEEEEEehhh-hh
Confidence            47889999998888888889999999999999999887 899999988876422 2222221   445577777776 99


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEE
Q psy2442          81 DAVYECVAENGVGDAVSAEASLT  103 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~  103 (111)
                      +|.|.|.+.+..|.. ...+.+.
T Consensus       773 aG~yTcem~~~~~~~-~~~i~l~  794 (873)
T KOG4194|consen  773 AGIYTCEMSNTLGTE-RIHICLL  794 (873)
T ss_pred             cceEEEEEEeeccce-eeEEEEE
Confidence            999999999988865 3444333

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=99.04  E-value=1e-08  Score=52.04  Aligned_cols=75  Identities=20%  Similarity=0.331  Sum_probs=52.3

Q ss_pred             EcCcceeeecCCcEEEEEEEeccCCCeEEEEECCe--ecc---------------CCCCceEEEeCCCCCeEEEEccCCC
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK--RVS---------------GTQSRYMVQEFPPGGSLLRIEPVRH   77 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~~---------------~~~~~~~~~~~~~~~~~l~~~~~~~   77 (111)
                      +.+..+.+.+|++++|.|...+ ....+.|++...  .+.               ....++...........|.|.+++.
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~   81 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP   81 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence            4566678999999999999877 666899998532  110               0113444332222345599999998


Q ss_pred             CCCCeEEEEEeeeC
Q psy2442          78 ARDDAVYECVAENG   91 (111)
Q Consensus        78 ~~d~g~y~c~~~~~   91 (111)
                       +|+|.|.|.+.+.
T Consensus        82 -~Dsg~Y~Ca~~~~   94 (110)
T cd05899          82 -EDSAVYLCASSLG   94 (110)
T ss_pred             -hhCEEEEEEeeCC
Confidence             9999999998764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.03  E-value=8.7e-09  Score=50.87  Aligned_cols=70  Identities=16%  Similarity=0.266  Sum_probs=50.7

Q ss_pred             eeecCCcEEEEEEE-ec----cCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          21 AVKAGGITSFYCIA-RG----DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        21 ~~~~g~~~~l~c~~-~~----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      .+..|....+.|+- .+    ...+.+.|++++..+.....++....   ....|.+..+.. +|.|.|.|.+.+..+.
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~---~~~~L~I~~v~~-~D~G~YtC~~~~~~~g   80 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK---GSTYLHIIDVSL-NDSGYYTCKLQFTHEG   80 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC---CCCEEEEEEcCh-hhCEEEEEEEEEeeCC
Confidence            45568888999973 22    34568999999998864433433322   234599999998 9999999999997654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.01  E-value=6.8e-08  Score=48.01  Aligned_cols=84  Identities=19%  Similarity=0.223  Sum_probs=61.5

Q ss_pred             ceeeecCCcEEEEEEEeccCCCe-EEEEECCeeccCCCCceEEEeCC---CCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          19 NQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFP---PGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      .+.+..|+.+.|.|.....|.|. +.|.+.+..+.............   +..+.|.+.++.. .|.|.|.|.+.|....
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~-~E~G~YTf~a~N~~~~   90 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKG-TEGGTYTFLVSNSDAS   90 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecCh-hhCcEEEEEEECCCCe
Confidence            35788999999999999999996 99998877664332222111110   1224599999998 9999999999998876


Q ss_pred             eEeeEEEEEE
Q psy2442          95 AVSAEASLTV  104 (111)
Q Consensus        95 ~~~~~~~l~~  104 (111)
                      . +..+.|.+
T Consensus        91 ~-s~tF~l~v   99 (101)
T cd05860          91 A-SVTFNVYV   99 (101)
T ss_pred             E-EEEEEEEE
Confidence            4 66666665

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.00  E-value=7.5e-08  Score=57.64  Aligned_cols=79  Identities=22%  Similarity=0.259  Sum_probs=56.1

Q ss_pred             EcCcceeeecCCcEEEEEEEeccCCC---eEEEEECCeeccCCC----CceEEEeCC-------CCCeEEEEccCCCCCC
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDPIP---VIQWRKNGKRVSGTQ----SRYMVQEFP-------PGGSLLRIEPVRHARD   80 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~~~~----~~~~~~~~~-------~~~~~l~~~~~~~~~d   80 (111)
                      ..+....+..|+.+.|.|.+.+.|.+   .+.|.++|..+....    .++......       .....|.|.++.. .|
T Consensus       225 ~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~-~D  303 (326)
T PHA02785        225 QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKE-ED  303 (326)
T ss_pred             cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcch-hc
Confidence            34556677789999999999987764   799999998774321    122221100       0124589999998 99


Q ss_pred             CeEEEEEeeeCCCc
Q psy2442          81 DAVYECVAENGVGD   94 (111)
Q Consensus        81 ~g~y~c~~~~~~~~   94 (111)
                      .|.|.|.+.|..+.
T Consensus       304 ~G~Y~C~A~n~~~~  317 (326)
T PHA02785        304 ATTFTCMAFTIPSI  317 (326)
T ss_pred             CeeeEEEEEeccCc
Confidence            99999999997754

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.99  E-value=1.8e-08  Score=50.97  Aligned_cols=76  Identities=18%  Similarity=0.274  Sum_probs=53.5

Q ss_pred             EcCcceeeecCCcEEEEEEEeccCCCeEEEEECCee--c----c-------CCCCceEEEeCC-CCCeEEEEccCCCCCC
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKR--V----S-------GTQSRYMVQEFP-PGGSLLRIEPVRHARD   80 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~--~----~-------~~~~~~~~~~~~-~~~~~l~~~~~~~~~d   80 (111)
                      +.+..+.+..|++++|.|.....+...+.|++....  .    .       ....++.+.... .....|.|.+++. +|
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~-~D   81 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQL-SD   81 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCH-HH
Confidence            455667889999999999988777778999975321  0    0       112455443221 1345599999998 99


Q ss_pred             CeEEEEEeeeC
Q psy2442          81 DAVYECVAENG   91 (111)
Q Consensus        81 ~g~y~c~~~~~   91 (111)
                      +|.|.|.+.+.
T Consensus        82 sG~Y~C~~~~~   92 (109)
T cd04983          82 SAVYFCALSES   92 (109)
T ss_pred             CEEEEEEEecC
Confidence            99999998864

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.98  E-value=1.9e-08  Score=50.10  Aligned_cols=78  Identities=21%  Similarity=0.248  Sum_probs=52.1

Q ss_pred             ceeeecCCcEEEEEEEe-----------ccCCCeEEEEECCeeccCCC------CceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442          19 NQAVKAGGITSFYCIAR-----------GDPIPVIQWRKNGKRVSGTQ------SRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~-----------~~~~~~~~w~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      ...+.+|+.+.|.|...           ......+.|++++.......      .|+..     ....|.|.++.. +|+
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~-----~~~~Lwf~Pa~~-eDS   82 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSK-----EEDSIWFRPAEL-QDS   82 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEE-----eCCEEEEEeCCh-hhC
Confidence            35678999999999962           11233789999975543221      13322     334488889998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEE
Q psy2442          82 AVYECVAENGVGDAVSAEASLT  103 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~  103 (111)
                      |.|.|.+.|.... ....+.|.
T Consensus        83 G~Y~C~~rN~t~C-~~~~i~l~  103 (104)
T cd05896          83 GLYTCVLRNSTYC-MKVSMSLT  103 (104)
T ss_pred             eEEEEEECCCCcc-eEEEEEEE
Confidence            9999999987643 24444443

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.96  E-value=3.8e-08  Score=49.64  Aligned_cols=76  Identities=25%  Similarity=0.329  Sum_probs=51.0

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccC-CCeEEEEECCe--ec---c--------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRKNGK--RV---S--------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~--~~---~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      .+.+..+.+..|++++|.|...+.. ...+.|++...  ..   .        ....++.... ......|.|.+++. +
T Consensus         4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~~~~-~   81 (106)
T cd04980           4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG-SGTDFTLTISRVEP-E   81 (106)
T ss_pred             EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec-cCCEEEEEECCCCh-H
Confidence            4566667889999999999986654 45799987531  11   0        0012343322 11334589999998 9


Q ss_pred             CCeEEEEEeeeC
Q psy2442          80 DDAVYECVAENG   91 (111)
Q Consensus        80 d~g~y~c~~~~~   91 (111)
                      |+|.|.|.+.+.
T Consensus        82 Dsg~Y~Ca~~~~   93 (106)
T cd04980          82 DAAVYYCQQYGT   93 (106)
T ss_pred             HCEEEEEEEeCC
Confidence            999999998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.93  E-value=3.5e-08  Score=48.50  Aligned_cols=73  Identities=15%  Similarity=0.270  Sum_probs=50.3

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      |.+...+. ..+..|++++|.|... .+...+.|+++|......  ..   ........|.+.++.. +|+|.|.|...+
T Consensus         3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~--~~---~~~~~~~~f~i~~v~~-~~~G~Y~C~~~~   74 (91)
T cd05751           3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK--KP---PEPQNKAKFFIPSMKR-EHAGRYRCYYRS   74 (91)
T ss_pred             CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc--cc---CCCceeEEEEccCCCh-hHCEEEEEEEEC
Confidence            44444444 3678999999999875 455688899987754321  00   0011334588999998 999999999887


Q ss_pred             C
Q psy2442          91 G   91 (111)
Q Consensus        91 ~   91 (111)
                      .
T Consensus        75 ~   75 (91)
T cd05751          75 G   75 (91)
T ss_pred             C
Confidence            5

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.90  E-value=9.8e-08  Score=46.19  Aligned_cols=64  Identities=23%  Similarity=0.408  Sum_probs=48.9

Q ss_pred             cceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      +...+..|+.+.|.|...+. .+.+.|+.++..+... .++...    ... +.|..+.. .|+|.|.|.+.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~-~r~~~~----~~G-LlI~~~~~-~dsG~Y~C~s~   67 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQ-FSYRVG----TDG-LLILVTSP-EHSGTYRCYSE   67 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCC-cceEEe----CCC-CEEEECCH-hhCEEEEEEEe
Confidence            34678899999999998775 5599999999987543 454443    222 66788887 99999999975

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.88  E-value=9e-08  Score=45.77  Aligned_cols=65  Identities=18%  Similarity=0.368  Sum_probs=43.3

Q ss_pred             EEEEEEEe-ccCCCeEEEEECCeeccCCCCceEEEeCC-CCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          28 TSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEFP-PGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        28 ~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      +.|.|... +.|++.+.||+++..+...... ...... ...+.|.+..... .|.+.|.|.+.|..+.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~-~~~~~~~t~~s~L~~~~~~~-Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQ-QENGKTVSVSNTIRFPVDRK-DDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCccc-ccCCceEEEEEEEEEEeeec-cCCcEEEEEEEChhhC
Confidence            67899964 5777899999999998542110 000000 0223477777776 7888999999998754

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.88  E-value=2.8e-07  Score=46.48  Aligned_cols=80  Identities=23%  Similarity=0.355  Sum_probs=51.5

Q ss_pred             cCCcEEEEEEEeccC------CCeEEEEECCee-------c-c---------CCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442          24 AGGITSFYCIARGDP------IPVIQWRKNGKR-------V-S---------GTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~------~~~~~w~~~~~~-------~-~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .|++++|.|.....+      ...+.|++....       + .         .-..|+...........|.|.+++. .|
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~-~D   79 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRL-ED   79 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCCh-HH
Confidence            478999999876552      346899985311       0 0         0013433322112345599999998 99


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          81 DAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      +|.|.|.+.+..+.. ...+.|.|.
T Consensus        80 sG~Y~C~v~~~~~~~-~~~~~l~v~  103 (106)
T cd05877          80 YGRYRCEVIDGLEDE-SVVVALRLR  103 (106)
T ss_pred             CEEEEEEEEecccce-EEEEEEEEE
Confidence            999999998877653 566666553

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.84  E-value=7.3e-08  Score=49.38  Aligned_cols=75  Identities=17%  Similarity=0.303  Sum_probs=50.8

Q ss_pred             EcCcceeeecCCcEEEEEEEec--cCCCeEEEEECC--eecc----------------CCCCceEEEeCCC-CCeEEEEc
Q psy2442          15 LRPRNQAVKAGGITSFYCIARG--DPIPVIQWRKNG--KRVS----------------GTQSRYMVQEFPP-GGSLLRIE   73 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~--~~~~~~~w~~~~--~~~~----------------~~~~~~~~~~~~~-~~~~l~~~   73 (111)
                      +.+..+.+..|++++|.|...+  .+...+.|++..  ..+.                ....++....... ....|.|.
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   82 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ   82 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence            3455577889999999999877  566689999852  1110                0123444432221 23458999


Q ss_pred             cCCCCCCCeEEEEEeee
Q psy2442          74 PVRHARDDAVYECVAEN   90 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~   90 (111)
                      +++. .|+|.|.|.+..
T Consensus        83 ~~~~-~Dsg~Y~C~~~~   98 (116)
T cd04982          83 NLEK-EDSATYYCAYWE   98 (116)
T ss_pred             ECCH-HHCEEEEEEEec
Confidence            9998 999999998764

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.84  E-value=2e-08  Score=47.17  Aligned_cols=73  Identities=27%  Similarity=0.551  Sum_probs=45.1

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccC-CCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      |.+...+.......+. +.|.|.+.+.+ .+.+.|+ ........ .......   ....|.+..+.. .|.|.|.|.+.
T Consensus         2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~-~~~~~~~---~~~~L~i~~v~~-~~~g~y~C~a~   74 (75)
T PF13927_consen    2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNS-NSRGSSS---SNSTLTISNVTR-SDNGTYTCIAS   74 (75)
T ss_dssp             SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEE-EEEEEEE---EEEEEEESSCCG-GGTEEEEEEEE
T ss_pred             CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceee-eeeeccc---eeeEEEEccCCH-HhCcEEEEEEE
Confidence            5555555543333333 99999998877 6689999 11111000 0101111   345588999998 99999999987


Q ss_pred             e
Q psy2442          90 N   90 (111)
Q Consensus        90 ~   90 (111)
                      |
T Consensus        75 N   75 (75)
T PF13927_consen   75 N   75 (75)
T ss_dssp             E
T ss_pred             C
Confidence            6

...

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.83  E-value=1e-07  Score=46.78  Aligned_cols=73  Identities=16%  Similarity=0.177  Sum_probs=48.5

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCeeccC-----------------CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNGKRVSG-----------------TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      |++++|.|.........+.|++.......                 -..|+...    ....|.|.++.. .|+|.|.|.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~----~~~sL~I~~l~~-~DsG~Y~c~   75 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY----PNGSLLIQNLTK-EDSGTYTLQ   75 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc----CCceEEEccCCc-hhcEEEEEE
Confidence            68899999877655558899876432210                 01233332    225599999998 999999999


Q ss_pred             eeeCCCceEeeEEEE
Q psy2442          88 AENGVGDAVSAEASL  102 (111)
Q Consensus        88 ~~~~~~~~~~~~~~l  102 (111)
                      +....+......+.|
T Consensus        76 v~~~~~~~~~~~~~l   90 (92)
T cd05741          76 IISTNGVTENAKFFL   90 (92)
T ss_pred             EEcCCCcEEEEEEEE
Confidence            988765443445444

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.81  E-value=3.4e-07  Score=46.14  Aligned_cols=79  Identities=15%  Similarity=0.121  Sum_probs=50.3

Q ss_pred             ceeeecCCcEEEEEEEeccCCCeEEEEECCeec---------cC---------CCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442          19 NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV---------SG---------TQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~---------~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      ...+..|+.+.|.|.........+.|+++....         ..         ...|..+.    ....|.|.++.. .|
T Consensus         7 p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~----~ngSL~I~~v~~-~D   81 (105)
T cd05774           7 PPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIY----PNGSLLIQNVTQ-KD   81 (105)
T ss_pred             CCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEe----CCCcEEEecCCc-cc
Confidence            346778999999997655444488999863211         00         11233322    223489999998 99


Q ss_pred             CeEEEEEeeeCCCceEeeEEEE
Q psy2442          81 DAVYECVAENGVGDAVSAEASL  102 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l  102 (111)
                      .|.|.|.+.+.-.......+.+
T Consensus        82 ~G~Y~~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          82 TGFYTLQTITTNFQVEQATVHL  103 (105)
T ss_pred             CEEEEEEEEeCCccEEEEEEEE
Confidence            9999999988653322444433

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.81  E-value=1.2e-07  Score=56.75  Aligned_cols=76  Identities=22%  Similarity=0.300  Sum_probs=53.8

Q ss_pred             eeecCCcEEEEEEE-----eccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442          21 AVKAGGITSFYCIA-----RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        21 ~~~~g~~~~l~c~~-----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      -+..|+.+.+.|..     .+.|.+.+.|++++...    .+.....   ....+.+.++.. +|+|.|.|.+.|..+..
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~----~~~~~~~---~g~~l~i~~~~~-~DsG~Y~C~a~N~~g~~  108 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADN----DRIIPID---NGSNMLILNPTQ-SDSGIYICITKNETYCD  108 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCceEEEEECCCcc----ceEEEcc---CCceEEEcccCc-ccCeEEEEEEECCCcce
Confidence            45679999999996     57777899999987532    1211111   223366788887 99999999999987753


Q ss_pred             EeeEEEEEEe
Q psy2442          96 VSAEASLTVY  105 (111)
Q Consensus        96 ~~~~~~l~~~  105 (111)
                       ...+.|.|.
T Consensus       109 -~~s~~L~V~  117 (326)
T PHA02785        109 -MMSLNLTIV  117 (326)
T ss_pred             -EEEEEEEEE
Confidence             556666554

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.81  E-value=4.6e-07  Score=46.17  Aligned_cols=80  Identities=21%  Similarity=0.373  Sum_probs=50.8

Q ss_pred             cCCcEEEEEEEeccC------------CCeEEEEECCe--ec------------c-CCCCceEEEeC--CCCCeEEEEcc
Q psy2442          24 AGGITSFYCIARGDP------------IPVIQWRKNGK--RV------------S-GTQSRYMVQEF--PPGGSLLRIEP   74 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~------------~~~~~w~~~~~--~~------------~-~~~~~~~~~~~--~~~~~~l~~~~   74 (111)
                      .|++++|.|......            .+.+.|++...  ..            . .-..|+.+...  ......|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            378999999876432            35889997521  10            0 00124444321  11345699999


Q ss_pred             CCCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          75 VRHARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      +.. +|+|.|.|.+.+..... ...+.|.|.
T Consensus        81 l~~-sDsG~Y~C~V~~g~~~~-~~~v~l~v~  109 (112)
T cd05900          81 LRS-NDSGTYRCEVMHGIEDN-YDTVEVQVK  109 (112)
T ss_pred             ccc-ccCEEEEEEEecCCCCc-eeEEEEEEE
Confidence            998 99999999998766543 555555554

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.80  E-value=1.9e-07  Score=53.21  Aligned_cols=87  Identities=17%  Similarity=0.211  Sum_probs=57.1

Q ss_pred             cceeeecCCcEEEEEEEecc-----------CCCeEEEEECCeec--cCCCCc--eE-EEeC--CCCCeEEEEccCCCCC
Q psy2442          18 RNQAVKAGGITSFYCIARGD-----------PIPVIQWRKNGKRV--SGTQSR--YM-VQEF--PPGGSLLRIEPVRHAR   79 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~-----------~~~~~~w~~~~~~~--~~~~~~--~~-~~~~--~~~~~~l~~~~~~~~~   79 (111)
                      ..+.+.+|+.+.|.|.+.+.           ..+.+.|++.+...  .....+  .. +...  ......|.|.++.. .
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~-~  108 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN-I  108 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh-H
Confidence            34677899999999997653           34588999987542  111111  00 0000  00234599999998 9


Q ss_pred             CCeEEEEEeeeCCCceEeeEEEEEEec
Q psy2442          80 DDAVYECVAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        80 d~g~y~c~~~~~~~~~~~~~~~l~~~~  106 (111)
                      |+|.|.|.+.|..+.. ...+.|.|..
T Consensus       109 DsG~Y~C~a~N~~~~~-~~~i~L~V~~  134 (227)
T PHA02826        109 DEGIYICTISSGNICE-ESTIRLTFDS  134 (227)
T ss_pred             HCEEEEEEEEECCcce-EEEEEEEEec
Confidence            9999999999977653 6666666643

>KOG4222|consensus

Probab=98.79  E-value=3.2e-08  Score=65.95  Aligned_cols=93  Identities=32%  Similarity=0.527  Sum_probs=70.5

Q ss_pred             eeEEcCcceeeecCCcEEEEEE-EeccCCCeEEEEECCeeccCCC-CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          12 EITLRPRNQAVKAGGITSFYCI-ARGDPIPVIQWRKNGKRVSGTQ-SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      .+...+..+.+..|..+++.|. ..+.+.+.+.|.++|..+.-.. ..+.+.    +...|.|.++.+ .|.|.|.|.+.
T Consensus       133 dfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~li----sgG~LlIsnvrk-sD~GtY~CVat  207 (1281)
T KOG4222|consen  133 DFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALI----SGGNLLISNVRK-SDEGTYACVAT  207 (1281)
T ss_pred             hcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEe----cCCcEEEecccc-CCCceeeeeec
Confidence            3344556667788999999998 4678888999999999886222 333333    445589999999 99999999999


Q ss_pred             eCCCceEeeEEEEEEecCCC
Q psy2442          90 NGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~~~~~~  109 (111)
                      |..|...+..-.+++.+.|.
T Consensus       208 NmvG~ReS~~A~lsv~e~P~  227 (1281)
T KOG4222|consen  208 NMVGERESIPARLSVQEKPW  227 (1281)
T ss_pred             ccccccccccceeeeccCCc
Confidence            99987556677787777663

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.78  E-value=3.7e-07  Score=43.90  Aligned_cols=63  Identities=27%  Similarity=0.473  Sum_probs=39.8

Q ss_pred             EEEEEEEec-cCCCeEEEEECCeeccCCCCceEEEeCCCC----CeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          28 TSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPPG----GSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        28 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      +.|.|.+.+ .|.+.+.|++++..+........... ++.    .+.|.+..... .|.+.|.|.+.|..
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~-~~~~~y~C~a~n~~   69 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLK-DGKRETTVSTLPITPSDH-DTGRTFTCRARNEA   69 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEec-CCCeEEEEEEEEEeCcee-cCCCEEEEEEcCcc
Confidence            578999987 57779999999987753211111111 101    12355655554 57789999998864

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.78  E-value=2.6e-07  Score=45.95  Aligned_cols=68  Identities=18%  Similarity=0.321  Sum_probs=45.9

Q ss_pred             eeecCCcEEEEEEEecc--CCCeEEEEECCe--ecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442          21 AVKAGGITSFYCIARGD--PIPVIQWRKNGK--RVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~--~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      .+..|++++|.|.....  ....+.|++...  .+.           ....++...... ....|.|.+++. +|+|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~-~Dsg~Y~   79 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG-NTASLTISGAQT-EDEADYY   79 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC-CEEEEEECCCCh-hhCEEEE
Confidence            46789999999997664  445799987532  111           001244433222 345589999998 9999999


Q ss_pred             EEeee
Q psy2442          86 CVAEN   90 (111)
Q Consensus        86 c~~~~   90 (111)
                      |.+.+
T Consensus        80 C~~~~   84 (98)
T cd04984          80 CQVWD   84 (98)
T ss_pred             EEEcc
Confidence            99865

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.76  E-value=4.2e-07  Score=43.84  Aligned_cols=74  Identities=14%  Similarity=0.355  Sum_probs=49.8

Q ss_pred             eeecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEee
Q psy2442          21 AVKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSA   98 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~   98 (111)
                      .+..|++++|.|.....+.|  .+.|...+...-....        .....|.+..+.. .|+|.+.|.+....... ..
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~--------~~~ktL~~~qv~~-qdSG~WtC~V~~~~k~~-~~   79 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN--------QDKKTLNLVQLGP-NDSGTWDCIVSVNSSEK-TL   79 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc--------CCccEEEeceeCc-ccCCEEEEEEEECceEE-EE
Confidence            57789999999998654444  8999876554211100        0445588899998 99999999997653222 44


Q ss_pred             EEEEEE
Q psy2442          99 EASLTV  104 (111)
Q Consensus        99 ~~~l~~  104 (111)
                      .+.+.|
T Consensus        80 ~~~V~V   85 (88)
T cd07694          80 KLDIKV   85 (88)
T ss_pred             EeeEEE
Confidence            445544

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.75  E-value=1.3e-06  Score=44.10  Aligned_cols=80  Identities=28%  Similarity=0.422  Sum_probs=50.5

Q ss_pred             cCCcEEEEEEEeccC------CCeEEEEECC-----ee-c-c-CC---------CCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442          24 AGGITSFYCIARGDP------IPVIQWRKNG-----KR-V-S-GT---------QSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~------~~~~~w~~~~-----~~-~-~-~~---------~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .|+.++|.|.....+      ...+.|++..     .. + . ..         ..+............|.|.+++. .|
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-sD   79 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRL-ED   79 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCH-HH
Confidence            488999999976543      4588999862     10 0 0 00         01111111112345599999998 99


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          81 DAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      +|.|.|.+.+..+.. ...+.|.|.
T Consensus        80 ~G~Y~C~v~~~~~~~-~~~v~L~V~  103 (106)
T cd05714          80 SGRYRCEVIDGIEDE-QDTVELEVR  103 (106)
T ss_pred             CEEEEEEEEcCCCce-EEEEEEEEE
Confidence            999999999875543 666666654

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>KOG4221|consensus

Probab=98.73  E-value=5.3e-07  Score=60.88  Aligned_cols=85  Identities=27%  Similarity=0.518  Sum_probs=68.1

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      +.|.+...+.+...+....+..|+++.|.|.+.+.+-+.+.|.++...+... .++...    -...|.|..+.. +|.|
T Consensus       133 a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~-~r~i~l----psG~L~I~~~qp-~d~g  206 (1381)
T KOG4221|consen  133 AKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLD-SRVIVL----PSGALEISGLQP-SDTG  206 (1381)
T ss_pred             EEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCC-CcEEEc----CCCcEEeccccc-CCCc
Confidence            4556666677777777778999999999999999888899999999877654 355544    334489999998 9999


Q ss_pred             EEEEEeeeCCC
Q psy2442          83 VYECVAENGVG   93 (111)
Q Consensus        83 ~y~c~~~~~~~   93 (111)
                      .|.|.+.+..-
T Consensus       207 ~yrc~vt~g~~  217 (1381)
T KOG4221|consen  207 EYRCVVTGGAS  217 (1381)
T ss_pred             eEEEEEecCCc
Confidence            99999988653

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.73  E-value=2e-07  Score=46.32  Aligned_cols=78  Identities=18%  Similarity=0.235  Sum_probs=51.1

Q ss_pred             ecCCcEEEEEEEec-cCCCeEEEEECCeecc--C-----C-----C----CceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442          23 KAGGITSFYCIARG-DPIPVIQWRKNGKRVS--G-----T-----Q----SRYMVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus        23 ~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~--~-----~-----~----~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      ..|++++|.|.... .....+.|++......  .     .     .    .|+.+   ......|.|.+++. +|+|.|.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~---~~~~~sL~I~~~~~-~DsG~Y~   77 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNF---SQNDYSLQISNLKM-EDAGSYR   77 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEe---cCCceeEEECCCch-HHCEEEE
Confidence            36899999998754 3344788987643221  0     0     0    12222   11335599999998 9999999


Q ss_pred             EEeeeCCCceEeeEEEEEE
Q psy2442          86 CVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        86 c~~~~~~~~~~~~~~~l~~  104 (111)
                      |.+....+......+.|.|
T Consensus        78 c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          78 AEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             EEEEcCCCCeEEEEEEEEe
Confidence            9998876654566666655

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.71  E-value=1.3e-06  Score=43.27  Aligned_cols=77  Identities=18%  Similarity=0.230  Sum_probs=47.0

Q ss_pred             CcEEEEEEEeccC---CCeEEEEECCee-------c--------cC-CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEE
Q psy2442          26 GITSFYCIARGDP---IPVIQWRKNGKR-------V--------SG-TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYEC   86 (111)
Q Consensus        26 ~~~~l~c~~~~~~---~~~~~w~~~~~~-------~--------~~-~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c   86 (111)
                      ++++|.|......   ...+.|++....       .        .. ...|..+.........|.|.++.. .|+|.|.|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C   79 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRL-EDEGNYIC   79 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCc-ccCEEEEE
Confidence            4678999876644   236889885431       0        00 012222222111234599999998 99999999


Q ss_pred             Eeee-CCCceEeeEEEEEE
Q psy2442          87 VAEN-GVGDAVSAEASLTV  104 (111)
Q Consensus        87 ~~~~-~~~~~~~~~~~l~~  104 (111)
                      .+.. ..|. ....+.|.|
T Consensus        80 ~v~~~~~g~-~~~~~~l~V   97 (98)
T cd05718          80 EFATFPQGN-RQKVTTLTV   97 (98)
T ss_pred             EEEeCCCCc-EEEEEEEEe
Confidence            9875 4555 366666655

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.71  E-value=3.3e-07  Score=46.01  Aligned_cols=71  Identities=21%  Similarity=0.345  Sum_probs=48.1

Q ss_pred             eeecCCcEEEEEEEecc-CCCeEEEEECCee--cc--------------CCCCceEEEeCCC-CCeEEEEccCCCCCCCe
Q psy2442          21 AVKAGGITSFYCIARGD-PIPVIQWRKNGKR--VS--------------GTQSRYMVQEFPP-GGSLLRIEPVRHARDDA   82 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~--~~--------------~~~~~~~~~~~~~-~~~~l~~~~~~~~~d~g   82 (111)
                      .+..|++++|.|..... ....+.|++....  ..              ....++....... ....|.|.+++. .|+|
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~-~D~G   80 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQP-EDSA   80 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCH-HHCE
Confidence            46789999999998876 5568999985331  00              0123443332211 234589999998 9999


Q ss_pred             EEEEEeeeCC
Q psy2442          83 VYECVAENGV   92 (111)
Q Consensus        83 ~y~c~~~~~~   92 (111)
                      .|.|.+.+..
T Consensus        81 ~Y~C~v~~~~   90 (105)
T cd00099          81 VYYCAVSLSG   90 (105)
T ss_pred             EEEEEEecCC
Confidence            9999988754

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.69  E-value=9.5e-07  Score=42.44  Aligned_cols=78  Identities=18%  Similarity=0.279  Sum_probs=46.3

Q ss_pred             EEEEEEEec-cCCCeEEEEECCeeccCCCCceEEE-eCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          28 TSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQ-EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        28 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      +.|.|.+.+ .|.+.+.|++++..+.......... ......+.|.+..-.. .|...|.|.+.|..-........|.|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~e-DdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKE-DDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchh-hCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            578999766 5666999999999886431110000 0000223366655543 455579999998653334556666665


Q ss_pred             c
Q psy2442         106 E  106 (111)
Q Consensus       106 ~  106 (111)
                      +
T Consensus        81 y   81 (82)
T cd05883          81 Y   81 (82)
T ss_pred             E
Confidence            3

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.68  E-value=3.9e-06  Score=43.09  Aligned_cols=75  Identities=15%  Similarity=0.212  Sum_probs=48.4

Q ss_pred             cceeeecCCcEEEEEEEeccC----CCeEEEEE---------------CCeeccCC----CCceEEEeCC-CCCeEEEEc
Q psy2442          18 RNQAVKAGGITSFYCIARGDP----IPVIQWRK---------------NGKRVSGT----QSRYMVQEFP-PGGSLLRIE   73 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~---------------~~~~~~~~----~~~~~~~~~~-~~~~~l~~~   73 (111)
                      ..+.+..|+.+.|.|......    ...+.|..               +|......    ..|..+.... .....+.|.
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~   85 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH   85 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence            346788999999999986533    23788932               22222101    1244333211 133558999


Q ss_pred             cCCCCCCCeEEEEEeeeCCC
Q psy2442          74 PVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~   93 (111)
                      +++. +|.|.|.|.+.|.-+
T Consensus        86 nv~~-sD~G~Y~C~v~n~p~  104 (116)
T cd05879          86 NLDY-TDNGTFTCDVKNPPD  104 (116)
T ss_pred             cCCc-ccCEEEEEEEEcCCC
Confidence            9998 999999999998654

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.65  E-value=2.8e-06  Score=44.93  Aligned_cols=48  Identities=13%  Similarity=0.265  Sum_probs=36.9

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCC--eEEEEECCee
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIP--VIQWRKNGKR   50 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~   50 (111)
                      .+|.|..+|.+...+.......|+.+.|.|.+.+..++  .+.|++++..
T Consensus        31 ~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771          31 IQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             EEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            56788888888766655555578899999999986443  7899998754

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.64  E-value=1e-06  Score=45.16  Aligned_cols=76  Identities=22%  Similarity=0.282  Sum_probs=51.0

Q ss_pred             EEcCcceeeecCCcEEEEEEEecc-CCCeEEEEECCe--ec---c--------CCCCceEEEeC-CCCCeEEEEccCCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGK--RV---S--------GTQSRYMVQEF-PPGGSLLRIEPVRHA   78 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~--~~---~--------~~~~~~~~~~~-~~~~~~l~~~~~~~~   78 (111)
                      .+.+..+.+..|++++|.|..... ....+.|++...  .+   .        ....|+..... ......|.|.++.. 
T Consensus         3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~-   81 (116)
T cd07706           3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL-   81 (116)
T ss_pred             EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH-
Confidence            355666789999999999987653 345789997421  10   0        11245554321 11334589999998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|+|.|.|.+..
T Consensus        82 ~Dsg~Y~C~~~~   93 (116)
T cd07706          82 EDSAKYFCALST   93 (116)
T ss_pred             HHCEEEEEEEEC
Confidence            999999999875

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.60  E-value=1.3e-06  Score=43.17  Aligned_cols=74  Identities=15%  Similarity=0.237  Sum_probs=47.0

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      |.+...+. ..+..|++++|.|.... ..-.+.|++.+......  .............|.|..++. .|+|.|.|...
T Consensus         2 P~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~--~~~~~~~~~~~a~f~I~~~~~-~~~G~Y~C~~~   75 (94)
T cd05711           2 PFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL--HLYEKHHGGFQASFPLGPVTP-AHAGTYRCYGS   75 (94)
T ss_pred             CEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce--ecccccCCeEEEEEEecCCCc-ccCEEEEEEEE
Confidence            44444443 47789999999997655 44478899987653210  000000000223488999998 99999999864

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.57  E-value=2.9e-06  Score=42.91  Aligned_cols=69  Identities=20%  Similarity=0.348  Sum_probs=44.7

Q ss_pred             eeecCCcEEEEEEEecc-CCCeEEEEECCee-----c------cC----------CCCceEEEe-CCCCCeEEEEccCCC
Q psy2442          21 AVKAGGITSFYCIARGD-PIPVIQWRKNGKR-----V------SG----------TQSRYMVQE-FPPGGSLLRIEPVRH   77 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~-----~------~~----------~~~~~~~~~-~~~~~~~l~~~~~~~   77 (111)
                      .+..|++++|.|..... ....+.|++....     +      ..          ...++.... .......|.|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            57789999999998653 3347999975332     0      00          012343321 111234589999998


Q ss_pred             CCCCeEEEEEeee
Q psy2442          78 ARDDAVYECVAEN   90 (111)
Q Consensus        78 ~~d~g~y~c~~~~   90 (111)
                       +|+|.|.|...+
T Consensus        82 -~Dsg~YyCa~~~   93 (107)
T cd07700          82 -EDSGTYFCMTVG   93 (107)
T ss_pred             -HHCEEEEEeEcC
Confidence             999999998753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.57  E-value=8.3e-06  Score=41.48  Aligned_cols=80  Identities=28%  Similarity=0.431  Sum_probs=50.2

Q ss_pred             cCCcEEEEEEEeccC----------CCeEEEEECC--eecc-----C--------CCCceEEEe--CCCCCeEEEEccCC
Q psy2442          24 AGGITSFYCIARGDP----------IPVIQWRKNG--KRVS-----G--------TQSRYMVQE--FPPGGSLLRIEPVR   76 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~----------~~~~~w~~~~--~~~~-----~--------~~~~~~~~~--~~~~~~~l~~~~~~   76 (111)
                      .|++++|.|.....+          ...+.|++..  ....     .        -..|+.+..  .......|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            378999999986543          2468999852  1110     0        012333321  11234559999999


Q ss_pred             CCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          77 HARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      . +|+|.|.|.+....... ...+.|.|.
T Consensus        81 ~-sD~G~Y~C~v~~~~~~~-~~~v~l~V~  107 (110)
T cd05878          81 S-SDSGVYRCEVMHGIEDE-QDTVPLEVT  107 (110)
T ss_pred             h-hhCEEEEEEEEeCCCcc-eEEEEEEEE
Confidence            8 99999999998755443 566666654

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.56  E-value=4.6e-06  Score=41.42  Aligned_cols=78  Identities=22%  Similarity=0.318  Sum_probs=47.3

Q ss_pred             CCcEEEEEEEeccCCC-eEEEEECCee----c---cC---------CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442          25 GGITSFYCIARGDPIP-VIQWRKNGKR----V---SG---------TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~-~~~w~~~~~~----~---~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      |++++|.|........ .+.|++....    +   ..         -..++...........|.|.++.. +|+|.|.|.
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~-~D~G~Y~C~   79 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTL-EDEGCYKCI   79 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCce-eeeEEEEEE
Confidence            6789999986544332 5889874221    0   00         012222222222345599999998 999999999


Q ss_pred             eee-CCCceEeeEEEEEE
Q psy2442          88 AEN-GVGDAVSAEASLTV  104 (111)
Q Consensus        88 ~~~-~~~~~~~~~~~l~~  104 (111)
                      ... +.|. .+..+.|.|
T Consensus        80 ~~~~p~g~-~~~~~~L~v   96 (97)
T cd05846          80 FNTFPDGS-KSGTMCLTV   96 (97)
T ss_pred             EEeCCCCC-eeeEEEEEE
Confidence            875 4454 466666655

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.55  E-value=1e-05  Score=41.51  Aligned_cols=76  Identities=16%  Similarity=0.258  Sum_probs=47.1

Q ss_pred             CcceeeecCCcEEEEEEEeccC----CCeEEEEECCe------ec--c-C------CC----CceEEEeCC-CCCeEEEE
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP----IPVIQWRKNGK------RV--S-G------TQ----SRYMVQEFP-PGGSLLRI   72 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~~------~~--~-~------~~----~~~~~~~~~-~~~~~l~~   72 (111)
                      +..+.+..|+.++|.|......    ...+.|++...      .+  . .      ..    .|+.+.... .....|.|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            4456788999999999876432    13688975321      10  0 0      01    122222111 12245899


Q ss_pred             ccCCCCCCCeEEEEEeeeCCC
Q psy2442          73 EPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        73 ~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      .+++. +|+|.|.|.+.|.-.
T Consensus        85 ~~v~~-~D~G~Y~C~v~~~~~  104 (116)
T cd05715          85 HNLQF-TDNGTYTCDVKNPPD  104 (116)
T ss_pred             eeCCc-ccCEEEEEEEEeCCC
Confidence            99998 999999999987543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.54  E-value=7.6e-06  Score=40.76  Aligned_cols=78  Identities=22%  Similarity=0.281  Sum_probs=47.1

Q ss_pred             CCcEEEEEEEeccC---CCeEEEEECCeec-----------cC-----CCCceEEEeC--CCCCeEEEEccCCCCCCCeE
Q psy2442          25 GGITSFYCIARGDP---IPVIQWRKNGKRV-----------SG-----TQSRYMVQEF--PPGGSLLRIEPVRHARDDAV   83 (111)
Q Consensus        25 g~~~~l~c~~~~~~---~~~~~w~~~~~~~-----------~~-----~~~~~~~~~~--~~~~~~l~~~~~~~~~d~g~   83 (111)
                      |++++|.|......   ...+.|++.....           ..     -..|+.....  ......|.|.+++. .|+|.
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~-~D~G~   79 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRA-SDEGL   79 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCCh-hhCEE
Confidence            67889999875322   1257787754211           00     0123333211  11235599999998 99999


Q ss_pred             EEEEeeeCCCceEeeEEEEEE
Q psy2442          84 YECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        84 y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      |.|.+.+..+. ....+.|.|
T Consensus        80 Y~C~v~~~~~~-~~~~i~l~v   99 (100)
T cd05713          80 YTCFFQSDGFY-EEATVELKV   99 (100)
T ss_pred             EEEEEecCCcE-EEEEEEEEE
Confidence            99999886654 366666654

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.50  E-value=5.1e-06  Score=42.01  Aligned_cols=76  Identities=14%  Similarity=0.278  Sum_probs=50.6

Q ss_pred             EcCcceeeecCCcEEEEEEEe-ccCCCeEEEEECCe-----ecc-------------CCCCceEEEeCC-CCCeEEEEcc
Q psy2442          15 LRPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGK-----RVS-------------GTQSRYMVQEFP-PGGSLLRIEP   74 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~-----~~~-------------~~~~~~~~~~~~-~~~~~l~~~~   74 (111)
                      ..+..+.+..|+++.|.|... ......+.|++...     .+.             ....++.+.... .....|.|.+
T Consensus         6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~   85 (114)
T PF07686_consen    6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN   85 (114)
T ss_dssp             EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred             EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence            345567889999999999988 44555889987322     110             012233333221 1234599999


Q ss_pred             CCCCCCCeEEEEEeeeC
Q psy2442          75 VRHARDDAVYECVAENG   91 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~   91 (111)
                      +.. .|+|.|.|.+...
T Consensus        86 l~~-~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   86 LQP-SDSGTYFCQVSTS  101 (114)
T ss_dssp             ESG-GGEEEEEEEEEES
T ss_pred             CCc-CcCEEEEEEEEEC
Confidence            998 9999999998876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.46  E-value=7.7e-06  Score=42.16  Aligned_cols=75  Identities=19%  Similarity=0.143  Sum_probs=48.0

Q ss_pred             cCcceeeecCCcEEEEEEEeccC------CCeEEEEECCeec--------cC--------CCCceEEEeC-CCCCeEEEE
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDP------IPVIQWRKNGKRV--------SG--------TQSRYMVQEF-PPGGSLLRI   72 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~------~~~~~w~~~~~~~--------~~--------~~~~~~~~~~-~~~~~~l~~   72 (111)
                      .|..+.+..|+.++|.|......      ...+.|++.....        ..        -..|+..... ......|.|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            45567889999999999764321      2368999753210        00        0124444211 113345899


Q ss_pred             ccCCCCCCCeEEEEEeeeC
Q psy2442          73 EPVRHARDDAVYECVAENG   91 (111)
Q Consensus        73 ~~~~~~~d~g~y~c~~~~~   91 (111)
                      .+++. +|+|.|.|.+...
T Consensus        85 ~~l~~-~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQP-EDSGKYFFRVELG  102 (119)
T ss_pred             ccCCh-hhCeEEEEEEEcC
Confidence            99998 9999999988653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.43  E-value=9.3e-06  Score=40.31  Aligned_cols=71  Identities=20%  Similarity=0.253  Sum_probs=46.8

Q ss_pred             eeeecCCcEEEEEEEec-cCCCeEEEEECCeec------------cCCCCceEEEeCC-CCCeEEEEccCCCCCCCeEEE
Q psy2442          20 QAVKAGGITSFYCIARG-DPIPVIQWRKNGKRV------------SGTQSRYMVQEFP-PGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~------------~~~~~~~~~~~~~-~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      +.+..|++++|.|.... .....+.|++.....            .....++.+.... .....|.|.++.. +|+|.|.
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~   80 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRK-EDAGWYW   80 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCH-HHCEEEE
Confidence            35778999999998765 234578898764211            0112344443221 2334589999998 9999999


Q ss_pred             EEeeeC
Q psy2442          86 CVAENG   91 (111)
Q Consensus        86 c~~~~~   91 (111)
                      |.+...
T Consensus        81 C~~~~~   86 (98)
T cd05716          81 CGVGDD   86 (98)
T ss_pred             EEcccC
Confidence            987664

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.41  E-value=4e-06  Score=42.20  Aligned_cols=68  Identities=13%  Similarity=0.272  Sum_probs=44.4

Q ss_pred             eeecCCcEEEEEEEeccCCCeEEEEECCee----c------cCC-----------CCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          21 AVKAGGITSFYCIARGDPIPVIQWRKNGKR----V------SGT-----------QSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~----~------~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      .+..|++++|.|.........+.|++....    +      ...           ..++.... +.....|.|.+++. +
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~-~~~~~~L~I~~~~~-s   79 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSR-SSNSFVLTLKNFQK-E   79 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEe-cCCEEEEEECCCCH-H
Confidence            367899999999876554557899975422    1      000           12232222 11334589999998 9


Q ss_pred             CCeEEEEEeee
Q psy2442          80 DDAVYECVAEN   90 (111)
Q Consensus        80 d~g~y~c~~~~   90 (111)
                      |+|.|.|.+.+
T Consensus        80 DsgtY~Ca~~~   90 (104)
T cd05720          80 NEGYYFCSVAS   90 (104)
T ss_pred             HCEEEEEEEcc
Confidence            99999998753

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.39  E-value=1.3e-05  Score=40.06  Aligned_cols=75  Identities=13%  Similarity=0.167  Sum_probs=46.4

Q ss_pred             cCcceeeecCCcEEEEEEEec-cCCCe--EEEEECCeeccCCCCceEEE--eCCCCCeEEEEccCCCCCCCe-EEEEEee
Q psy2442          16 RPRNQAVKAGGITSFYCIARG-DPIPV--IQWRKNGKRVSGTQSRYMVQ--EFPPGGSLLRIEPVRHARDDA-VYECVAE   89 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~-~~~~~--~~w~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~d~g-~y~c~~~   89 (111)
                      .+....+.+|+.++|.|.+.+ .|.+.  +.|++++..+...  .+...  ........+.+... + .|.| .|.|.+.
T Consensus         7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~--~~~~~~~~~~~~~stlt~~~~-r-~D~g~~~sC~A~   82 (100)
T cd05755           7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQ--PFGDNTKSPVNAPATITITVD-R-EDHGANFSCETE   82 (100)
T ss_pred             ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccc--eeccccCCCceeEEEEEEecc-h-hhCCcEEEEEEE
Confidence            333345679999999999877 45555  6999999988542  11110  00002233555433 4 5666 8999999


Q ss_pred             eCCCc
Q psy2442          90 NGVGD   94 (111)
Q Consensus        90 ~~~~~   94 (111)
                      +.+..
T Consensus        83 l~l~~   87 (100)
T cd05755          83 LDLRP   87 (100)
T ss_pred             eccCc
Confidence            87643

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.37  E-value=2.1e-05  Score=40.36  Aligned_cols=76  Identities=17%  Similarity=0.283  Sum_probs=47.2

Q ss_pred             CcceeeecCCcEEEEEEEeccC----CCeEEEEEC----Cee--c---cC-----CC----CceEEEeC-CCCCeEEEEc
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP----IPVIQWRKN----GKR--V---SG-----TQ----SRYMVQEF-PPGGSLLRIE   73 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~----~~~--~---~~-----~~----~~~~~~~~-~~~~~~l~~~   73 (111)
                      +..+.+..|++++|.|.....+    ...+.|+..    +..  +   ..     ..    .|+.+... ......|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4557888999999999975432    236899742    111  1   00     01    12222111 1123449999


Q ss_pred             cCCCCCCCeEEEEEeeeCCC
Q psy2442          74 PVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~   93 (111)
                      +++. .|+|.|.|.+.|.-.
T Consensus        85 ~v~~-~D~G~Y~C~v~~~~~  103 (115)
T cd05880          85 QLQP-TDNGTYTCQVKNPPD  103 (115)
T ss_pred             eCCh-hhCEEEEEEEEeCCC
Confidence            9998 999999999998654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.33  E-value=6.4e-06  Score=40.57  Aligned_cols=70  Identities=26%  Similarity=0.434  Sum_probs=43.2

Q ss_pred             ecCCcEEEEEEEecc-CC-CeEEEEECCeeccCCCCceEEEeCCCCC----eEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          23 KAGGITSFYCIARGD-PI-PVIQWRKNGKRVSGTQSRYMVQEFPPGG----SLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        23 ~~g~~~~l~c~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      ..|+.+.|.|.+.+. |. ..+.|+++|..+.............+..    ..|.+..... .+.+.|.|.+.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~-~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDW-NSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHh-CCCCCEEEEEEeCCC
Confidence            468899999999997 43 4799999988875432101111111011    2244444433 488999999988653

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.30  E-value=4.7e-05  Score=37.51  Aligned_cols=67  Identities=19%  Similarity=0.214  Sum_probs=39.0

Q ss_pred             CCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEE-eCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          25 GGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQ-EFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ++.+.|.|.+.+..++  .+.|++++............. ..++.........+.. .+...|.|.+.+..
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~-~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP-EDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC-CCCCEEEEEEEeCC
Confidence            6789999999996554  789999986332111100111 1111111122334555 67789999988754

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.25  E-value=6.6e-05  Score=37.26  Aligned_cols=77  Identities=19%  Similarity=0.312  Sum_probs=46.8

Q ss_pred             CcEEEEEEEeccCC-CeEEEEECCe----ecc------------CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          26 GITSFYCIARGDPI-PVIQWRKNGK----RVS------------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        26 ~~~~l~c~~~~~~~-~~~~w~~~~~----~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      +.++|.|....... ..+.|.+...    .+.            .-..|..+.........+.|.++.. .|+|.|.|.+
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~-~D~G~Y~C~v   79 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGF-SDIGVYICKA   79 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCc-cccEEEEEEE
Confidence            35788888754332 2678876421    110            0012333322122345599999998 9999999998


Q ss_pred             ee-CCCceEeeEEEEEE
Q psy2442          89 EN-GVGDAVSAEASLTV  104 (111)
Q Consensus        89 ~~-~~~~~~~~~~~l~~  104 (111)
                      .. +.|. .+....|.|
T Consensus        80 ~tfP~G~-~~~~~~l~~   95 (96)
T cd05887          80 VTFPLGN-TQSSTTVTV   95 (96)
T ss_pred             EeCCCCC-eeEEEEEEE
Confidence            76 5665 477777765

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.25  E-value=8.9e-05  Score=40.85  Aligned_cols=85  Identities=18%  Similarity=0.228  Sum_probs=54.4

Q ss_pred             eeeecCCcEEEEEEEe-ccCCCeEEEEECCeecc----------C-CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442          20 QAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVS----------G-TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~----------~-~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      +.+.+|+.++|.|... +...+.+.|++....+.          . -..|+...........+.|.++.. .|+|.|.|.
T Consensus        25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~-sDeGcY~C~  103 (189)
T PHA02987         25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSL-KDNGCYTCI  103 (189)
T ss_pred             EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCCh-hhCeEEEEE
Confidence            5688999999999974 55566899998633221          0 012443222222345599999998 999999998


Q ss_pred             eee-CCCceEeeEEEEEEe
Q psy2442          88 AEN-GVGDAVSAEASLTVY  105 (111)
Q Consensus        88 ~~~-~~~~~~~~~~~l~~~  105 (111)
                      ..- +.|...+....|.|.
T Consensus       104 F~tfp~G~~~~gt~CLtVt  122 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVT  122 (189)
T ss_pred             EEecCCCCCceeEEEEEEE
Confidence            765 445223555555544

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.22  E-value=4.1e-05  Score=39.38  Aligned_cols=73  Identities=19%  Similarity=0.331  Sum_probs=46.5

Q ss_pred             CcceeeecCCcEEEEEEEeccC--CCeEEEEECCe--ec------cC----------CCCceEEEeCC-CCCeEEEEccC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP--IPVIQWRKNGK--RV------SG----------TQSRYMVQEFP-PGGSLLRIEPV   75 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~~------~~----------~~~~~~~~~~~-~~~~~l~~~~~   75 (111)
                      +..+.+..|++++|.|......  ...+.|++...  .+      ..          ...++...... .....|.|.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            4456788999999999875433  34689987422  11      00          01234333211 12235899999


Q ss_pred             CCCCCCeEEEEEeee
Q psy2442          76 RHARDDAVYECVAEN   90 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~   90 (111)
                      .. +|+|.|.|....
T Consensus        84 ~~-~Dsa~YyCa~~~   97 (117)
T cd04981          84 TP-EDTAVYYCARGL   97 (117)
T ss_pred             CH-HHCEEEEEEEEc
Confidence            98 999999998754

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.21  E-value=9.1e-05  Score=37.00  Aligned_cols=36  Identities=28%  Similarity=0.425  Sum_probs=27.9

Q ss_pred             CeEEEEccCCCCCCCeEEEEEeee-CCCceEeeEEEEEE
Q psy2442          67 GSLLRIEPVRHARDDAVYECVAEN-GVGDAVSAEASLTV  104 (111)
Q Consensus        67 ~~~l~~~~~~~~~d~g~y~c~~~~-~~~~~~~~~~~l~~  104 (111)
                      ...|.|.++.. +|+|.|.|.+.+ +.|. .+..+.|.|
T Consensus        63 ~~sL~I~nv~~-sD~GtY~C~v~~~p~g~-~~~~~~L~V   99 (100)
T cd05888          63 DGALILRNAVQ-ADEGKYKCRVITFPAGN-FEAELVLTV   99 (100)
T ss_pred             ceEEEEecCcc-ccceEEEEEEEeCCCCC-eeeEEEEEe
Confidence            34599999998 999999999987 4555 366666655

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.20  E-value=7.7e-05  Score=35.86  Aligned_cols=63  Identities=24%  Similarity=0.384  Sum_probs=37.0

Q ss_pred             EEEEEEEecc-CCCeEEEEECCeeccCCCCceEEEeCCCC----CeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          28 TSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPG----GSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        28 ~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      +.|.|.+.+. |.+.+.|++++..+... . .........    ...+.+..... .+.+.|.|.+.+...
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~-~-~~~~~~~~~~~~~~s~l~~~~~~~-d~g~~~~C~v~h~~l   69 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGV-K-LKEEDENGKTFTVTSSLRFQVDRE-DDGAPIICRVDHPAL   69 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCc-e-eeEecCCCCEEEEEEEEEEEcchh-hCCCEEEEEEeChhc
Confidence            5789998765 67799999999887532 1 111111101    11233333332 344689999998653

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.18  E-value=0.00012  Score=37.27  Aligned_cols=79  Identities=24%  Similarity=0.386  Sum_probs=48.5

Q ss_pred             CCcEEEEEEEeccC-------CCeEEEEECC-----eec----c---------CCCCceEEEeCC--CCCeEEEEccCCC
Q psy2442          25 GGITSFYCIARGDP-------IPVIQWRKNG-----KRV----S---------GTQSRYMVQEFP--PGGSLLRIEPVRH   77 (111)
Q Consensus        25 g~~~~l~c~~~~~~-------~~~~~w~~~~-----~~~----~---------~~~~~~~~~~~~--~~~~~l~~~~~~~   77 (111)
                      |.++.|.|.....|       .+.+.|.+..     ...    .         .-..|..+...+  .....|.|.++..
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            67888999854322       3578898641     111    0         012344443211  1345699999998


Q ss_pred             CCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          78 ARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        78 ~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                       +|+|.|.|.+...... ....+.|.|.
T Consensus        82 -~D~G~Y~C~v~~g~~~-~~~~v~L~V~  107 (110)
T cd05902          82 -SDSGTYRCEVVLGIND-EQDTVPLEVT  107 (110)
T ss_pred             -HHCEEEEEEEEECCcc-cEEEEEEEEE
Confidence             9999999999885544 3666666654

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.16  E-value=0.00012  Score=36.55  Aligned_cols=36  Identities=22%  Similarity=0.433  Sum_probs=29.1

Q ss_pred             CeEEEEccCCCCCCCeEEEEEeee-CCCceEeeEEEEEE
Q psy2442          67 GSLLRIEPVRHARDDAVYECVAEN-GVGDAVSAEASLTV  104 (111)
Q Consensus        67 ~~~l~~~~~~~~~d~g~y~c~~~~-~~~~~~~~~~~l~~  104 (111)
                      ...+.|.++.. .|+|.|.|.+.+ +.|. .+..+.|.|
T Consensus        62 daSi~i~nl~~-~D~G~Y~C~v~t~P~g~-~~~~~~L~V   98 (99)
T cd05886          62 DGTISLSRLEL-EDEGVYICEFATFPTGN-RESQLNLTV   98 (99)
T ss_pred             cceEEEcCCcc-ccCEEEEEEEEeCCCCC-eEEEEEEEE
Confidence            35589999998 999999999999 5665 477777765

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.09  E-value=0.00021  Score=36.77  Aligned_cols=38  Identities=34%  Similarity=0.559  Sum_probs=29.5

Q ss_pred             CCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          66 GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        66 ~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      ....|.|.++.. +|.|.|.|.+.+..... ...+.|.|.
T Consensus        77 g~asL~i~~v~~-sD~G~Y~C~V~~g~~~~-~~~v~L~V~  114 (117)
T cd05901          77 GDASLTIVKLRA-SDAGVYRCEVMHGIEDT-QDTVSLDVS  114 (117)
T ss_pred             CceEEEEccccc-ccCEEEEEEEEECCccc-EEEEEEEEE
Confidence            345699999998 99999999998876653 566666654

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.08  E-value=0.00017  Score=35.59  Aligned_cols=67  Identities=18%  Similarity=0.233  Sum_probs=40.0

Q ss_pred             ecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCCC-eEEEEccCCCCCCCeEEEEEeeeC
Q psy2442          23 KAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGG-SLLRIEPVRHARDDAVYECVAENG   91 (111)
Q Consensus        23 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~d~g~y~c~~~~~   91 (111)
                      ..|+..+|.|.+.+..++  .+.|.++|..+. .........+.+.. .......+.. .+...|.|.+...
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~-~~~~~ysC~V~H~   82 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTP-TKGDEYACRVRHN   82 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECC-CCCCeEEEEEEEC
Confidence            456677999999997665  579999999875 21111111111111 1122223445 6677899998774

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.02  E-value=0.00022  Score=34.43  Aligned_cols=63  Identities=25%  Similarity=0.442  Sum_probs=38.1

Q ss_pred             EEEEEEEecc-CCCeEEEEECCeeccCCCCceEEEeCCCCC-----eEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          28 TSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGG-----SLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        28 ~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      +.|.|.+.+. |.+.+.|+++|..+.... . .........     ..+.+..... .+...|.|.+.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~-~-~~~~~~~~~t~~~~s~l~~~~~~~-d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAP-T-SVLEDGNGKTFTVSSSVEFQVTRE-DDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcc-e-eEEECCCCCEEEEEEEEEEEecch-hCCCEEEEEEECccc
Confidence            5789998775 667999999998875421 1 111111111     2233333333 455789999998653

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd00096 Ig Immunoglobulin domain

Probab=98.01  E-value=8.9e-05  Score=33.50  Aligned_cols=63  Identities=35%  Similarity=0.613  Sum_probs=40.6

Q ss_pred             EEEEEEeccCCCeEEEEECCeeccCCCCc--eEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          29 SFYCIARGDPIPVIQWRKNGKRVSGTQSR--YMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        29 ~l~c~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      .+.|...+.+...+.|++.+.........  ............+.+..+.. .|.|.|.|.+.+..
T Consensus         2 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~   66 (74)
T cd00096           2 TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTL-EDSGTYTCVASNSA   66 (74)
T ss_pred             EEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCc-ccCcEEEEEEecCc
Confidence            67899888666689999987765422110  00000001334488888887 89999999987754

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.97  E-value=0.0002  Score=34.84  Aligned_cols=68  Identities=22%  Similarity=0.344  Sum_probs=38.5

Q ss_pred             CCcEEEEEEE-eccCCCeEEEEECCeeccCCCCceEEEeCCC---CCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          25 GGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP---GGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        25 g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      |+.+.+.|.+ .+.|.+.+.|+.++................+   ..+.|.+..-.. .+...+.|.+.+..-
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~-~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTRE-DHGKTLTCRASHPAL   85 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGG-GTTEEEEEEEEETTC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChH-HCCeEEEEEEECCcc
Confidence            6799999975 5577789999998877621100111111110   112355544332 355679999988653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.93  E-value=0.00027  Score=34.15  Aligned_cols=63  Identities=21%  Similarity=0.332  Sum_probs=36.3

Q ss_pred             EEEEEEEec-cCCCeEEEEECCeeccCCCCceEEEeCCC----CCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          28 TSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPP----GGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        28 ~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ++|.|.+.+ .|...+.|+++|..+... .........+    ....+.+..... .+...|.|.+.+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~-~~~~~~~~~~~t~~~~s~L~~~~~~~-d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDV-KYLKEEDANRKTFTVSSTLDFRVDRS-DDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCc-eeeEeeCCCCCEEEEEEEEEEEcccc-cCCCEEEEEEechh
Confidence            578999887 455589999999987532 1111111110    112244443333 34568999998854

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.93  E-value=0.00015  Score=34.35  Aligned_cols=59  Identities=19%  Similarity=0.384  Sum_probs=35.2

Q ss_pred             EEEEEEEeccCCC--eEEEEECCe--e---cc------------CCCCceEEEeCC-CCCeEEEEccCCCCCCCeEEEEE
Q psy2442          28 TSFYCIARGDPIP--VIQWRKNGK--R---VS------------GTQSRYMVQEFP-PGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus        28 ~~l~c~~~~~~~~--~~~w~~~~~--~---~~------------~~~~~~~~~~~~-~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      +.|.|........  .+.|++...  .   +.            ....|+...... .....|.|.+++. +|+|.|.|.
T Consensus         2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~   80 (81)
T smart00406        2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRV-EDTGTYYCA   80 (81)
T ss_pred             EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCH-HHCEEEEEc
Confidence            5678876654433  677876431  0   00            112344443321 2335589999998 999999996

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.89  E-value=0.00049  Score=34.05  Aligned_cols=69  Identities=17%  Similarity=0.237  Sum_probs=39.8

Q ss_pred             ecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCC-ceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          23 KAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQS-RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        23 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ..++..+|.|.+.+..++  .+.|+++|..+..... .......++.........+.. .+...|.|.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~-~~~~~ysC~V~H~~   83 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP-SRGDTYTCVVEHSS   83 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC-CCCCEEEEEEEeCC
Confidence            357889999999996655  6799999988643211 111111111111122223344 55568999988754

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.88  E-value=0.00058  Score=34.87  Aligned_cols=68  Identities=22%  Similarity=0.363  Sum_probs=39.8

Q ss_pred             eecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCC-C---CeEEEEccCCCCCCCe-EEEEEeeeCC
Q psy2442          22 VKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPP-G---GSLLRIEPVRHARDDA-VYECVAENGV   92 (111)
Q Consensus        22 ~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~-~---~~~l~~~~~~~~~d~g-~y~c~~~~~~   92 (111)
                      ...|+.++|.|.+.+..++  .+.|+++|..+........ ...++ .   .+.+.+.. .. .|.+ .|.|.+.+..
T Consensus        18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~-p~~d~~ty~~~S~L~~~~-~~-~d~~~~ytC~V~H~~   92 (111)
T cd05772          18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNIT-PEGDSVSYNVTSTVQVKL-TE-DDVHSQVTCEVQHRT   92 (111)
T ss_pred             cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccccee-eCCCCCcEEEEEEEEEEC-cc-ccccCceEEEEEeCC
Confidence            4468889999999886554  7899999998753211111 11111 0   11133333 22 4443 5999988754

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>KOG3515|consensus

Probab=97.76  E-value=5.3e-05  Score=49.72  Aligned_cols=90  Identities=18%  Similarity=0.195  Sum_probs=60.3

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      |.+........+..|+.+.|.|.+.+.|+. .+.|++.+....   .++...    ....|.+....+ ...+.|.|.+.
T Consensus         8 pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~---~~~~~~----~~~~~~~~~~~~-~~~~~~~c~a~   79 (741)
T KOG3515|consen    8 PVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH---GRYATI----ADPTLVTTGDVR-DTVAELNCRAF   79 (741)
T ss_pred             ccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc---cccccc----cCCceeeecchh-hhhhhhhhhhc
Confidence            333333333477889999999998876655 799999877654   333332    334466666666 66788999999


Q ss_pred             eCCCceEeeEEEEEEecCC
Q psy2442          90 NGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~~~~~  108 (111)
                      |..+........+.+.+++
T Consensus        80 ns~~~~~~~~~~l~v~~~p   98 (741)
T KOG3515|consen   80 NSVGMPSRCPMILDVDYPP   98 (741)
T ss_pred             ccccCceecceeeccccCc
Confidence            9876554556666555544

>PHA03376 BARF1; Provisional

Probab=97.73  E-value=0.0018  Score=36.07  Aligned_cols=71  Identities=15%  Similarity=0.200  Sum_probs=45.2

Q ss_pred             ceeeecCCcEEEEEEEeccC-CC--eEEEEECCee----c-c-----------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          19 NQAVKAGGITSFYCIARGDP-IP--VIQWRKNGKR----V-S-----------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~-~~--~~~w~~~~~~----~-~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      .+.+..|+.+.|.|...... ..  .+.|++.+..    . .           ....++.+.... ..-.|.|.++.. +
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~-gnvsLvI~~l~l-S   97 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA-NTFFLVVTAANI-S   97 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC-CeEEEEEEeeee-c
Confidence            46777899999999976322 22  6789985321    0 0           111233332222 334488889998 9


Q ss_pred             CCeEEEEEeeeC
Q psy2442          80 DDAVYECVAENG   91 (111)
Q Consensus        80 d~g~y~c~~~~~   91 (111)
                      |.|.|.|.....
T Consensus        98 DdGtY~C~fQkg  109 (221)
T PHA03376         98 HDGNYLCRMKLG  109 (221)
T ss_pred             CCceEEEEEEcC
Confidence            999999997753

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.71  E-value=0.0011  Score=32.86  Aligned_cols=68  Identities=18%  Similarity=0.242  Sum_probs=37.7

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCCC-eEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGG-SLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      .++..+|.|.+.+..+.  .+.|.++|..+...........+.+.. .......+.. .+...|.|.+....
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~-~~~~~ytC~V~H~~   84 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP-EEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC-CCCCeEEEEEEeCC
Confidence            35567999999996655  679999998864321111111111111 1111123333 45568999987753

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.66  E-value=0.00094  Score=33.55  Aligned_cols=32  Identities=19%  Similarity=0.533  Sum_probs=25.2

Q ss_pred             eeecCCcEEEEEEEeccCCC--eEEEEECCeecc
Q psy2442          21 AVKAGGITSFYCIARGDPIP--VIQWRKNGKRVS   52 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~   52 (111)
                      .+..++.++|.|.+.+..++  .+.|.++|....
T Consensus        12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~   45 (102)
T cd05768          12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLS   45 (102)
T ss_pred             HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence            34457889999999997665  569999998764

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.63  E-value=0.00021  Score=37.78  Aligned_cols=38  Identities=21%  Similarity=0.292  Sum_probs=30.3

Q ss_pred             EEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        70 l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      |.|.+++. .|+|.|.|.+.+..+.. ...+.|.+..+|.
T Consensus         3 L~i~~v~~-~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~   40 (139)
T cd05771           3 LTLPGLTV-HDEGTYICSVSTPPHQA-QQIIQLSVSEPPR   40 (139)
T ss_pred             EEECCCCH-HHCEEEEEEEEccCcce-eeEEEEEEecCCc
Confidence            78889998 99999999998876663 6677777766653

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.61  E-value=0.00083  Score=33.59  Aligned_cols=32  Identities=22%  Similarity=0.495  Sum_probs=24.7

Q ss_pred             eeecCCcEEEEEEEeccCCC--eEEEEECCeecc
Q psy2442          21 AVKAGGITSFYCIARGDPIP--VIQWRKNGKRVS   52 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~   52 (111)
                      ....++.++|.|.+.+..+.  .+.|+++|..+.
T Consensus        13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~   46 (100)
T cd07699          13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVS   46 (100)
T ss_pred             HHccCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence            34457789999999886543  689999998874

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.60  E-value=0.0012  Score=31.68  Aligned_cols=65  Identities=22%  Similarity=0.318  Sum_probs=38.7

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEE-eCCCCC---eEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQ-EFPPGG---SLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~-~~~~~~---~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      .++.+.|.|.+.+..+.  .+.|++++..+.......... ..++..   ..+.+.   . .+...|.|.+....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~-~~~~~ysC~V~H~~   77 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---W-NSGDEYSCRVTHES   77 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---T-TTTGGEEEEEEETT
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---C-CCCCEEEEEEEECC
Confidence            48899999999986555  588999998875321111111 111111   113333   3 45557999988754

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.60  E-value=0.0017  Score=32.25  Aligned_cols=32  Identities=13%  Similarity=0.337  Sum_probs=24.3

Q ss_pred             eeecCCcEEEEEEEeccCCC--eEEEEECCeecc
Q psy2442          21 AVKAGGITSFYCIARGDPIP--VIQWRKNGKRVS   52 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~   52 (111)
                      ....+..++|.|.+.+..++  .+.|.++|....
T Consensus        12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~   45 (96)
T cd07697          12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSI   45 (96)
T ss_pred             HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence            33445678999999996655  578999998764

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.57  E-value=0.0015  Score=30.78  Aligned_cols=64  Identities=19%  Similarity=0.346  Sum_probs=35.1

Q ss_pred             EEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEe-CCCC---CeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          28 TSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQE-FPPG---GSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        28 ~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~-~~~~---~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ++|.|.+.+..++  .+.|+++|..+........... .++.   ...|.+..... .+...|.|.+.+..
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~-~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTW-ESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccC-CCCCEEEEEEEEcC
Confidence            5799999986444  7899999886432101110111 1111   12244444343 45578999987643

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.56  E-value=0.0021  Score=31.98  Aligned_cols=33  Identities=15%  Similarity=0.180  Sum_probs=24.9

Q ss_pred             CeEEEEccCCCCCCCeEEEEEeee-CCCceEeeEEE
Q psy2442          67 GSLLRIEPVRHARDDAVYECVAEN-GVGDAVSAEAS  101 (111)
Q Consensus        67 ~~~l~~~~~~~~~d~g~y~c~~~~-~~~~~~~~~~~  101 (111)
                      ...+.|.++.. .|+|.|.|.... +.|. .+..+.
T Consensus        59 d~sI~i~nvt~-~D~G~Y~C~~~t~P~g~-~~~~i~   92 (96)
T cd05889          59 DMSLSFNNATE-EDVGLYCCSLVTYPQGS-WEKVIE   92 (96)
T ss_pred             ccEEEEcCCCc-ccCEEEEEEEEeCCCCC-eEEEEE
Confidence            35589999998 999999999876 4565 355544

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.50  E-value=0.0025  Score=31.52  Aligned_cols=28  Identities=14%  Similarity=0.427  Sum_probs=22.3

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeec
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRV   51 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~   51 (111)
                      ..+.++|.|.+.+..+.  .+.|.++|...
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~   42 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVA   42 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEC
Confidence            45668999999986554  67999998876

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.47  E-value=0.0033  Score=32.22  Aligned_cols=71  Identities=11%  Similarity=0.142  Sum_probs=44.0

Q ss_pred             ceeeecCCcEEEEEEEeccCCC---eEEEEECCeec--------------cCCCCceEEEeCC-CCCeEEEEccCCCCCC
Q psy2442          19 NQAVKAGGITSFYCIARGDPIP---VIQWRKNGKRV--------------SGTQSRYMVQEFP-PGGSLLRIEPVRHARD   80 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~--------------~~~~~~~~~~~~~-~~~~~l~~~~~~~~~d   80 (111)
                      ...+..|..++|.|...+....   .+.|+++....              .....++...... ...-.|.+..++. +|
T Consensus         7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a-~D   85 (115)
T cd05721           7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA-NQ   85 (115)
T ss_pred             CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH-HH
Confidence            3567788999999998664433   57787642111              0111233333222 1234488999998 99


Q ss_pred             CeEEEEEeee
Q psy2442          81 DAVYECVAEN   90 (111)
Q Consensus        81 ~g~y~c~~~~   90 (111)
                      .+.|.|....
T Consensus        86 Ta~Y~Ca~e~   95 (115)
T cd05721          86 TDIYFCKIEL   95 (115)
T ss_pred             CeEEEEEeee
Confidence            9999997643

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA02633 hypothetical protein; Provisional

Probab=97.38  E-value=0.0017  Score=29.37  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=25.8

Q ss_pred             EEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          70 LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        70 l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      |.+.++.. +|+|.|.|...|..-. ....+.+.|...
T Consensus        20 Lwilpa~~-sDSGiYiC~~rn~t~c-~~~si~l~V~~~   55 (63)
T PHA02633         20 MLILNPTQ-SDSGIYMCITKNETYS-DMMKFDLCICLR   55 (63)
T ss_pred             EEEecccc-ccCcEEEEEEcCCCee-EEEEEEEEEeec
Confidence            56666665 8999999999876543 366677776543

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.38  E-value=0.0014  Score=32.61  Aligned_cols=31  Identities=6%  Similarity=0.234  Sum_probs=23.8

Q ss_pred             eeeecCCcEEEEEEEecc-CCC--eEEEEECCee
Q psy2442          20 QAVKAGGITSFYCIARGD-PIP--VIQWRKNGKR   50 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~-~~~--~~~w~~~~~~   50 (111)
                      ..+..++.++|.|.+.+. .++  .+.|.+++..
T Consensus         9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~   42 (96)
T cd07696           9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGE   42 (96)
T ss_pred             HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence            345568999999999998 544  5799998643

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=97.22  E-value=0.0025  Score=32.06  Aligned_cols=46  Identities=17%  Similarity=0.322  Sum_probs=34.3

Q ss_pred             CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          56 SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        56 ~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      .++.+..   ..-.|.|..++. +|+|.|...+.+..|......+.+.|.
T Consensus        62 ~r~~F~~---enlaLlIkaAq~-qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   62 NRFNFTS---ENLALLIKAAQP-QDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             HHEEEET---TTTEEEESS-SG-GG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             ceEeeec---cCceEEEeecCc-ccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            3555553   344589999998 999999999999999877778888765

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.19  E-value=0.0033  Score=28.84  Aligned_cols=52  Identities=25%  Similarity=0.479  Sum_probs=33.2

Q ss_pred             eecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          22 VKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        22 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      ...|.+++|.|+....   .+.|.+++.........            +.+.+-.  ++.|.|.|.+.+
T Consensus         4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~~------------~~~~~~~--e~~G~Y~C~~~~   55 (65)
T cd07692           4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDEK------------YLSLNHF--SSSGYYHCTADN   55 (65)
T ss_pred             EEeccEEEEECCCCCC---CceEEeCCccCCCCCce------------EEeeccC--CCCceEEEEeCC
Confidence            3478999999976532   38999998665542111            2222222  568999998753

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.15  E-value=0.0085  Score=30.84  Aligned_cols=32  Identities=25%  Similarity=0.549  Sum_probs=24.7

Q ss_pred             eeecCCcEEEEEEEeccCCC--eEEEEECCeecc
Q psy2442          21 AVKAGGITSFYCIARGDPIP--VIQWRKNGKRVS   52 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~   52 (111)
                      ....+..++|.|.+.+..+.  .+.|.+++..+.
T Consensus        14 e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~   47 (115)
T cd05769          14 EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVT   47 (115)
T ss_pred             HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECC
Confidence            34456778999999986655  679999998764

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.98  E-value=0.012  Score=29.15  Aligned_cols=27  Identities=15%  Similarity=0.366  Sum_probs=22.0

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCee
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKR   50 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~   50 (111)
                      .++.++|.|.+.+..+.  .+.|.++|..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            46678999999996655  5789999987

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.88  E-value=0.011  Score=27.43  Aligned_cols=49  Identities=22%  Similarity=0.470  Sum_probs=30.5

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      .+.+.|.|..    ...+.|++ |..+...           ....+.+-.... ...|.|.|...+
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~-----------~~~tlnLGs~~~-DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEV-----------SNTLLDLGSRIN-DPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Ccccccc-----------cccEEeccCccc-CCCcceEecCcc
Confidence            4578899955    23689999 4444322           112244444444 668999998766

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.72  E-value=0.022  Score=28.27  Aligned_cols=62  Identities=15%  Similarity=0.225  Sum_probs=34.1

Q ss_pred             cEEEEEEEe-ccCCCeEEEEECCeeccCCCCceEEEeCCCC---CeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          27 ITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG---GSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        27 ~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ...+.|.+. +.|.+.+.|+.+.....   ........++.   .+.|.+..... .|...|.|.+.+..
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~~~g~~---~~~~~~~~~gt~tv~S~l~~~P~~~-d~Gk~ltC~v~h~a   82 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSSTLGGNA---NTTSKENGDGTVTVTSEYSLVPTPE-ANGKEVTCKVEHET   82 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcCCCCCe---eEEEEeCCCCCEEEEEEEEEecCHH-HCCCEEEEEEeCcc
Confidence            567899865 67888999998722111   11111111101   12355544433 34457999999865

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.63  E-value=0.026  Score=28.00  Aligned_cols=64  Identities=19%  Similarity=0.295  Sum_probs=34.5

Q ss_pred             CCcEEEEEEE-eccCCCeEEEEECCeeccCCCCceEEEeCCC---CCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          25 GGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP---GGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        25 g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      .....+.|.+ .+.|.+.+.|+++.....   ........++   ..+.|.+..... .+...|.|.+.+..
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~---~~~~~~~~~g~~tv~S~l~~~p~~~-d~G~~~tC~v~h~~   82 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTLGGEA---ETQSKENPNGTVTVTSEYRLVPSRE-ANGKELTCVVSHPT   82 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCCCCcc---eeEeecCCCCCEEEEEEEEEecCHH-HCCCEEEEEEeCcc
Confidence            3456788997 578888999998611110   0000011010   112355544432 34457999998865

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.56  E-value=0.026  Score=28.30  Aligned_cols=36  Identities=25%  Similarity=0.465  Sum_probs=25.0

Q ss_pred             EcCcceeeecCCcEEEEEEEeccC-CC--eEEEEECCee
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDP-IP--VIQWRKNGKR   50 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~-~~--~~~w~~~~~~   50 (111)
                      +.+.......++.++|.|.+.+.. +.  .+.|..+|..
T Consensus         9 ~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986           9 QRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             ECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            333333344678899999999865 32  6889988765

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.11  E-value=0.023  Score=33.31  Aligned_cols=50  Identities=12%  Similarity=0.148  Sum_probs=35.5

Q ss_pred             CCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          38 PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        38 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ..|...|...+...-....+.+++    ....|.+.+... .++|.|.|......
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT----~TG~L~~~~F~e-smSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNIT----ETGKLMFKNFQE-SMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEc----cCceEEeecccc-ccCCceEEEEEEEe
Confidence            356888988755554443566665    334488999988 99999999977643

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=95.95  E-value=0.077  Score=26.51  Aligned_cols=66  Identities=23%  Similarity=0.337  Sum_probs=37.8

Q ss_pred             eeeecCCcEEE-EEEE-eccCCCeEEEEECCeeccC------CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeC
Q psy2442          20 QAVKAGGITSF-YCIA-RGDPIPVIQWRKNGKRVSG------TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENG   91 (111)
Q Consensus        20 ~~~~~g~~~~l-~c~~-~~~~~~~~~w~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~   91 (111)
                      ..+..|+.+.+ .|.+ .+.|.+.+.|+.+......      ....+.      ..+.+.+..... .|.-.+.|.+.+.
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~T------V~S~~~l~p~r~-d~G~~vtC~V~H~   83 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTT------VTSEYIWVPSRH-ANGHPLTCVVSHP   83 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEE------EEEEEEEEeCHH-HCCcEEEEEEeCc
Confidence            45667777777 7875 5678889999976332210      001111      112244444433 4455799999876


Q ss_pred             C
Q psy2442          92 V   92 (111)
Q Consensus        92 ~   92 (111)
                      .
T Consensus        84 a   84 (97)
T cd07704          84 A   84 (97)
T ss_pred             c
Confidence            4

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>KOG1480|consensus

Probab=95.93  E-value=0.0041  Score=41.47  Aligned_cols=83  Identities=25%  Similarity=0.368  Sum_probs=54.9

Q ss_pred             EcCcceeeecCCcEEEEEE-EeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          15 LRPRNQAVKAGGITSFYCI-ARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      ..+....+..+..+.+.|. ..+.+...+.|++++..+... ..+...    ....+.+..+.. .|.|.|.|.+.|..+
T Consensus       134 ~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd-~n~~~~----~d~~li~~~arl-sd~~nytc~a~ni~~  207 (909)
T KOG1480|consen  134 QSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPD-ANVIRA----SDHNLIISQARL-SDSGNYTCEATNIVA  207 (909)
T ss_pred             cChhhheecccccccccccCcccchhhhhhccccCCCCCcc-ccchhh----hcCCccccchhh-hhcccceeeeehhhc
Confidence            3344456777888888887 466777789999998877642 332222    223366777776 899999999999877


Q ss_pred             ceEeeEEEEE
Q psy2442          94 DAVSAEASLT  103 (111)
Q Consensus        94 ~~~~~~~~l~  103 (111)
                      ........+.
T Consensus       208 ~r~~~~~~v~  217 (909)
T KOG1480|consen  208 KRKSDPATVQ  217 (909)
T ss_pred             cccccceEEE
Confidence            5333344333

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=94.86  E-value=0.21  Score=24.68  Aligned_cols=85  Identities=21%  Similarity=0.297  Sum_probs=49.9

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      +...|....+..|+++.+.|...-..+..+.|...-..       ....... ....+.+.++.  .| ....|...-. 
T Consensus         6 v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k-------~~~~~g~-~W~~f~LsnV~--~d-s~~~C~~~C~-   73 (91)
T PF03921_consen    6 VRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSK-------TELDSGP-QWKAFQLSNVT--ED-SSPLCFFNCS-   73 (91)
T ss_dssp             EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEE-------EEEEEET-TEEEEEEEEE---SC-EEEEEEEEET-
T ss_pred             EEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecCC-------cccCCCC-cEEEEEEEccc--cC-CeEEEEEEcC-
Confidence            34566667889999999999986544445565543221       1111111 33447777776  33 5677887754 


Q ss_pred             CceEeeEEEEEEecCCC
Q psy2442          93 GDAVSAEASLTVYEGEE  109 (111)
Q Consensus        93 ~~~~~~~~~l~~~~~~~  109 (111)
                      |........|.++.+|.
T Consensus        74 g~Q~~~~~~ItVY~~Pe   90 (91)
T PF03921_consen   74 GEQSSASANITVYKPPE   90 (91)
T ss_dssp             TEEEEEEEEEEEEB--S
T ss_pred             CeEEEeEEeeEEeCCCC
Confidence            33346778888887764

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=93.19  E-value=0.57  Score=23.57  Aligned_cols=67  Identities=15%  Similarity=0.202  Sum_probs=37.2

Q ss_pred             eeecCCcEEEEEEEecc-CC--CeEEEEECCeeccCCCCceEEE---eC-CCCCeEEEEccCCCCCCCe-EEEEEeeeC
Q psy2442          21 AVKAGGITSFYCIARGD-PI--PVIQWRKNGKRVSGTQSRYMVQ---EF-PPGGSLLRIEPVRHARDDA-VYECVAENG   91 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~-~~--~~~~w~~~~~~~~~~~~~~~~~---~~-~~~~~~l~~~~~~~~~d~g-~y~c~~~~~   91 (111)
                      ....|..+++.|.+.+- |.  ..+.|+++...+...  .+...   +. ......+.+.. .+ .|.| .|.|.+.-.
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~--~f~~~~~~ks~~~~~~~vtftp-tr-eD~g~~fsC~A~L~   85 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSK--SFLEDMDKKSLETKSLEVTFTP-TI-EDIGKVLVCRAKLH   85 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceeccc--ccccccccCCCCCcceeEEEec-ch-hhCCcEEEEEEEEe
Confidence            34789999999998753 33  368898876654322  11100   00 00112233333 24 6776 899987643

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=93.13  E-value=0.29  Score=25.89  Aligned_cols=80  Identities=14%  Similarity=0.293  Sum_probs=38.7

Q ss_pred             eecCCcEEEEEEEecc-----CCCeEEEEECCeecc---CCCCceE--------EEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442          22 VKAGGITSFYCIARGD-----PIPVIQWRKNGKRVS---GTQSRYM--------VQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus        22 ~~~g~~~~l~c~~~~~-----~~~~~~w~~~~~~~~---~~~~~~~--------~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      ..-.+++.+.|.+...     ..-.+.|...+..+.   +...+..        +..-..+...|.+...+.  -.|.|.
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a--~~GnYT  101 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDA--VEGNYT  101 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHH--H-EEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhc--cccceE
Confidence            3357899999998652     223578998877652   1111110        100000222355555443  379999


Q ss_pred             EEeeeCCCceEeeEEEEEE
Q psy2442          86 CVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        86 c~~~~~~~~~~~~~~~l~~  104 (111)
                      |.+....... +..+.|..
T Consensus       102 CeVt~~~~eg-e~~i~Lk~  119 (130)
T PF08204_consen  102 CEVTELSREG-ETTIELKY  119 (130)
T ss_dssp             EEEEETTEEE-EEEEEEEE
T ss_pred             EEEEecCCCc-eEEEEEEE
Confidence            9998765432 44444443

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>KOG4597|consensus

Probab=91.12  E-value=0.84  Score=29.56  Aligned_cols=79  Identities=19%  Similarity=0.162  Sum_probs=51.4

Q ss_pred             eeeecCCcEEEEEEEeccCCCeEEEEEC---Ceec--cCC--CCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIPVIQWRKN---GKRV--SGT--QSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~---~~~~--~~~--~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ..+..+.+..++|...|.+.+.+.|.+.   ....  ...  .++....    +.-.|.|-+... .|+|-|.|.+.+..
T Consensus       206 w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vt----stcql~ic~ewq-~~a~w~tCs~rcg~  280 (560)
T KOG4597|consen  206 WFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVT----STCQLVICNEWQ-ADAGWYTCSARCGA  280 (560)
T ss_pred             hhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCccee----eeeeEEEcchhh-cCCCceeecccccc
Confidence            4566788899999999999999999653   1111  100  0111111    223377777776 89999999999988


Q ss_pred             CceEeeEEEEEE
Q psy2442          93 GDAVSAEASLTV  104 (111)
Q Consensus        93 ~~~~~~~~~l~~  104 (111)
                      |.. ...+.+.+
T Consensus       281 g~~-~rdv~c~s  291 (560)
T KOG4597|consen  281 GFL-RRDVPCSS  291 (560)
T ss_pred             cee-eccceeee
Confidence            864 55555544

>PHA03042 CD47-like protein; Provisional

Probab=90.31  E-value=2.7  Score=25.34  Aligned_cols=61  Identities=18%  Similarity=0.196  Sum_probs=38.0

Q ss_pred             ecCCcEEEEEEEecc-----CCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          23 KAGGITSFYCIARGD-----PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        23 ~~g~~~~l~c~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      .-.+++.+.|.....     ..-.+.|..++..+...+..        ....+.+.-.+  .-.|.|.|.+.+...
T Consensus        29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--------n~aSL~~~f~~--~l~GNYTCEv~~l~n   94 (286)
T PHA03042         29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--------NTSSLKFNFSK--NLSGNYTCEAINKFN   94 (286)
T ss_pred             ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--------cceEEEEeccc--cCCCceeEEEeeccc
Confidence            457899999997653     34468999887765321111        11224444333  457999999887543

>PHA03269 envelope glycoprotein C; Provisional

Probab=90.30  E-value=3.7  Score=26.96  Aligned_cols=50  Identities=22%  Similarity=0.315  Sum_probs=35.9

Q ss_pred             ceeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCC---eEEEEECCeeccC
Q psy2442           2 YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIP---VIQWRKNGKRVSG   53 (111)
Q Consensus         2 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~~   53 (111)
                      |.+|.++.+|.+...+  ..+..|+...-.|.+....++   .+.|+.++..+..
T Consensus       321 ~VtV~~yr~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~  373 (566)
T PHA03269        321 HITVMSYKRPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK  373 (566)
T ss_pred             EEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence            3455666667554333  467899999999998776544   6889999888763

>PHA03052 Hypothetical protein; Provisional

Probab=90.02  E-value=1.2  Score=20.75  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=25.3

Q ss_pred             cceeeecCCcEEEEEEEeccC---CCeEEEEECCeec
Q psy2442          18 RNQAVKAGGITSFYCIARGDP---IPVIQWRKNGKRV   51 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~~~   51 (111)
                      ..+.+..|+.+++.|++.-.+   .+.+.|..++..+
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            557788999999999975332   3467888877665

>PHA03270 envelope glycoprotein C; Provisional

Probab=89.89  E-value=3.8  Score=26.44  Aligned_cols=49  Identities=27%  Similarity=0.520  Sum_probs=35.4

Q ss_pred             ceeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCC---eEEEEECCeecc
Q psy2442           2 YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIP---VIQWRKNGKRVS   52 (111)
Q Consensus         2 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~   52 (111)
                      |.+|..+-+|.+...+  ..+..|+...-.|.+....++   .+.|+.++....
T Consensus       213 ~VtV~~yr~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~  264 (466)
T PHA03270        213 WTRVRMFRRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVF  264 (466)
T ss_pred             EEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCcccc
Confidence            3455556666654433  467899999999998776554   688999998774

>PHA02982 hypothetical protein; Provisional

Probab=89.39  E-value=2.8  Score=24.31  Aligned_cols=74  Identities=9%  Similarity=0.236  Sum_probs=43.9

Q ss_pred             ceeeecCCcEEEEEEEeccC-CCeEEEEECCeec-c----------C------CCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442          19 NQAVKAGGITSFYCIARGDP-IPVIQWRKNGKRV-S----------G------TQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~-~----------~------~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .+....++.+.|.|...... ..+..|..+.... .          .      ...-+.....+...++|.+..+.. +.
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i-~N  111 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDP-QN  111 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCc-cc
Confidence            34566799999999843322 2256687643211 1          0      001111122223556799999998 88


Q ss_pred             CeEEEEEeeeCCC
Q psy2442          81 DAVYECVAENGVG   93 (111)
Q Consensus        81 ~g~y~c~~~~~~~   93 (111)
                      .|-|.|.+....+
T Consensus       112 ~GCYtc~~ks~~~  124 (251)
T PHA02982        112 LGCFTCEAKDAEG  124 (251)
T ss_pred             CCceEEEEecCCC
Confidence            9999999886443

>PHA03273 envelope glycoprotein C; Provisional

Probab=89.00  E-value=2.1  Score=27.74  Aligned_cols=48  Identities=21%  Similarity=0.288  Sum_probs=34.8

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCC---eEEEEECCeecc
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIP---VIQWRKNGKRVS   52 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~   52 (111)
                      .++..+-+|.+...+  ..+..|+...-.|.+....++   .+.|+.++....
T Consensus       230 VtV~~yr~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~  280 (486)
T PHA03273        230 VTVSTYNAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD  280 (486)
T ss_pred             EEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence            344446666654433  467899999999998775554   689999999876

>KOG3515|consensus

Probab=86.43  E-value=2.2  Score=29.45  Aligned_cols=78  Identities=23%  Similarity=0.165  Sum_probs=44.3

Q ss_pred             ecCCcEEEEEEEeccC-CCeEEEEECCeeccCCC-CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEE
Q psy2442          23 KAGGITSFYCIARGDP-IPVIQWRKNGKRVSGTQ-SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEA  100 (111)
Q Consensus        23 ~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~  100 (111)
                      .+++.....-...+.+ .+.+.|...+-.+.... ..+....   ........++.+ .|.|.|.|.+.|.-|.. ...+
T Consensus       414 ~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~---~~~~~s~~~v~~-~d~g~y~~tatns~gg~-~~~~  488 (741)
T KOG3515|consen  414 MEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGA---GAGLGSGVNVSR-SDGGSYGLTATNSPGGA-QAYL  488 (741)
T ss_pred             ccCccccccCcccCCCcccchhheecceecccccCceEEeec---cccccccceeee-ccCCcceeeeccCCCce-eeEE
Confidence            3444443333333433 44788988777664322 2333332   222233456777 89999999999988775 5555


Q ss_pred             EEEEe
Q psy2442         101 SLTVY  105 (111)
Q Consensus       101 ~l~~~  105 (111)
                      .+.+.
T Consensus       489 ~~~~~  493 (741)
T KOG3515|consen  489 LLGVH  493 (741)
T ss_pred             eeccc
Confidence            54443

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=86.24  E-value=6.2  Score=24.68  Aligned_cols=21  Identities=14%  Similarity=0.430  Sum_probs=17.7

Q ss_pred             cEEEEEEEeccCCC--eEEEEEC
Q psy2442          27 ITSFYCIARGDPIP--VIQWRKN   47 (111)
Q Consensus        27 ~~~l~c~~~~~~~~--~~~w~~~   47 (111)
                      .++|.|.+.|..+.  .+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999998776  5689998

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=84.64  E-value=3.2  Score=19.98  Aligned_cols=19  Identities=16%  Similarity=0.305  Sum_probs=13.8

Q ss_pred             EEEccCCCCCCCeEEEEEee
Q psy2442          70 LRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        70 l~~~~~~~~~d~g~y~c~~~   89 (111)
                      ........ .|+|.+.|.+.
T Consensus        45 ~~~~~~~~-~d~G~w~C~a~   63 (80)
T PF05790_consen   45 VSTFTPTT-EDSGTWVCTAS   63 (80)
T ss_dssp             EEEESBTC-GGSEEEEEEEE
T ss_pred             EEEecCCC-CCCEEEEEEEc
Confidence            34444555 89999999994

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03376 BARF1; Provisional

Probab=84.09  E-value=2.1  Score=24.50  Aligned_cols=25  Identities=20%  Similarity=0.383  Sum_probs=20.4

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCe
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNGK   49 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~~   49 (111)
                      -+...+.|...+.|.|.++|..+..
T Consensus       139 ~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376        139 FSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             CCeeEEEEecCCcCCchheeccccC
Confidence            4567889998889999999987644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	111
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-38
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		2e-38
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-19
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		9e-18
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		9e-18
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		9e-18
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-17
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		3e-17
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		6e-16
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		1e-10
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		1e-10
2edj_A	100	Solution Structure Of The Fifth Ig-Like Domain From		3e-08
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		5e-08
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		5e-08
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		1e-07
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		2e-07
2eo9_A	118	Solution Structure Of The Fifth Ig-Like Domain From		3e-07
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		4e-07
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		7e-07
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		2e-06
3kld_A	384	Ptprg Cntn4 Complex Length = 384		2e-06
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		2e-06
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		3e-06
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		3e-06
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		1e-05
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		3e-05
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		3e-05
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		4e-05
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		4e-05
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		4e-05
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		6e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		1e-04
3s97_C	201	Ptprz Cntn1 Complex Length = 201		2e-04
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		2e-04
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		2e-04
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		3e-04
3k0w_A	218	Crystal Structure Of The Tandem Ig-Like C2-Type 2 D		4e-04
2yr3_A	99	Solution Structure Of The Fourth Ig-Like Domain Fro		4e-04
1wvz_A	104	Solution Structure Of The D2 Domain Of The Fibrobla		5e-04
3dar_A	105	Crystal Structure Of D2 Domain From Human Fgfr2 Len		6e-04
3caf_A	100	Crystal Structure Of Hfgfr2 D2 Domain Length = 100		6e-04
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		7e-04
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		7e-04
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		7e-04
2wv3_A	190	Neuroplastin-55 Binds To And Signals Through The Fi		7e-04
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		7e-04
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		7e-04
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		7e-04
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		7e-04
2wwk_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		8e-04

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score =  153 bits (387), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 84/102 (82%)
Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           PPEI  +P+NQ V+ GG+ SFYC ARGDP P I WRKNGK+VSGTQSRY V E P G S+
Sbjct: 6   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 65
Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           LRIEPVR  RDDA YECVAENGVGDAVSA+A+LT+YEG++ P
Sbjct: 66  LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTP 107

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score =  153 bits (386), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 84/102 (82%)
Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           PPEI  +P+NQ V+ GG+ SFYC ARGDP P I WRKNGK+VSGTQSRY V E P G S+
Sbjct: 8   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 67
Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           LRIEPVR  RDDA YECVAENGVGDAVSA+A+LT+YEG++ P
Sbjct: 68  LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTP 109

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 64/103 (62%), Gaps = 4/103 (3%)
Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GS 68
           PP  T  P +Q   +GG+ SF C A GDP P I W K GK+VS    R+ V EF  G GS
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVS--NQRFEVIEFDDGSGS 63
Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           +LRI+P+R  RD+A+YECVA N VG+ +S    LTV   ++ P
Sbjct: 64  VLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIP 105

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 4/104 (3%)
Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF-PPGG 67
           +PP     P++Q   +GG+ SF C A GDP P + W K GK+V+    R+   EF    G
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS--QRFETIEFDESAG 62
Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           ++LRI+P+R  RD+ VYECVA+N VG+ ++  A LTV   ++ P
Sbjct: 63  AVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLP 105

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 4/104 (3%)
Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP-PGG 67
           +PP     P++Q   +GG+ SF C A GDP P + W K GK+V+    R+   EF    G
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS--QRFETIEFDESAG 62
Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           ++LRI+P+R  RD+ VYECVA+N VG+ ++  A LTV   ++ P
Sbjct: 63  AVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLP 105

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 4/104 (3%)
Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF-PPGG 67
           +PP     P++Q   +GG+ SF C A GDP P + W K GK+V+    R+   EF    G
Sbjct: 5   EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS--QRFETIEFDESAG 62
Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           ++LRI+P+R  RD+ VYECVA+N VG+ ++  A LTV   ++ P
Sbjct: 63  AVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLP 105

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
Query: 17  PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GSLLRIEPV 75
           P +Q   +GG+ SF C A G+P P I W K GK+VS    R+ V EF  G GS+LRI+P+
Sbjct: 13  PEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS--SQRFEVIEFDDGAGSVLRIQPL 70
Query: 76  RHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           R  RD+A+YEC A N +G+ ++  A L+V E E+ P
Sbjct: 71  RVQRDEAIYECTATNSLGE-INTSAKLSVLEEEQLP 105

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
Query: 17  PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GSLLRIEPV 75
           P +Q   +GG+ SF C A G+P P I W K GK+VS    R+ V EF  G GS+LRI+P+
Sbjct: 14  PEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS--SQRFEVIEFDDGAGSVLRIQPL 71
Query: 76  RHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           R  RD+A+YEC A N +G+ ++  A L+V E ++ P
Sbjct: 72  RVQRDEAIYECTATNSLGE-INTSAKLSVLEEDQLP 106

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 4/103 (3%)
Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF-PPGGS 68
           PP    +P +Q   +GG+ SF C A GDP P + W K GK+V+    R+   EF    G+
Sbjct: 6   PPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN--SQRFETIEFDESAGA 63
Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           +LRI+P+R  RD+ +YECVA+N  G+ V+  A LTV   ++ P
Sbjct: 64  VLRIQPLRTPRDENIYECVAQNPHGE-VTVHAKLTVLREDQLP 105

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ----SRYMVQEFPP 65
           PP I   P +  V  G   +  C A G P P I+W K G+RV   +    S  M+    P
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL---P 65
Query: 66  GGSL--LRIEPVRHAR-DDAVYECVAENGVGDAVSAEASLTV 104
            GSL  LRI   R +R D+ VY CVA N +G+AVS +ASL V
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ----SRYMVQEFPP 65
           PP I   P +  V  G   +  C A G P P I+W K G+RV   +    S  M+    P
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL---P 65
Query: 66  GGSL--LRIEPVRHAR-DDAVYECVAENGVGDAVSAEASLTV 104
            GSL  LRI   R +R D+ VY CVA N +G+AVS +ASL V
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           PP I   P NQ +   G     C A GDP+PVI W K G    G   R  +QE       
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ----GT 63
Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L+I+ +R + D   Y CVA +  G+  S  A L V E
Sbjct: 64  LQIKNLRIS-DTGTYTCVATSSSGE-TSWSAVLDVTE 98

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
           P I   P +  VK     +  C   G P P I+W K+G+ VS  + +    +F  G    
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 71  -RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
            R    +  +D   Y CVA+N VG AVS  ASL +
Sbjct: 70  YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
           P I   P +  VK     +  C   G P P I+W K+G+ VS  + +    +F  G    
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 71  -RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
            R    +  +D   Y CVA+N VG AVS  ASL +
Sbjct: 70  YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 8   LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
            DPP I    + + ++ G      C+A G+P P I W  +GK+++    RY V ++    
Sbjct: 427 FDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIA-NNDRYQVGQYVTVN 485
Query: 68  ----SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
               S L I  V HA D  +Y+C+A++ VG A    A L VY
Sbjct: 486 GDVVSYLNITSV-HANDGGLYKCIAKSKVGVA-EHSAKLNVY 525

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
           ++  L PP     P N          F C   G P+P + W KNG  V  +    +V   
Sbjct: 306 ELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV--- 362
Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSA 98
             GGS LRI  V  + D+  Y+CVAEN  G+A S+
Sbjct: 363 --GGSNLRILGVVKS-DEGFYQCVAENEAGNAQSS 394

>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
          PP I   P NQ V   G     C+A G P+P I WRK+G  VS   SR    E      +
Sbjct: 8  PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE----NGV 63
Query: 70 LRIEPVRHAR--DDAVYECVAENGVGDA 95
          L+I   R+A+  D   Y C+A    G+A
Sbjct: 64 LQI---RYAKLGDTGRYTCIASTPSGEA 88

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 27  ITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYEC 86
           + +F C     P P I W +N   +    +RY ++E    G LL I  V  + DD +Y C
Sbjct: 24  VATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRE---NGQLLTILSVEDS-DDGIYCC 79
Query: 87  VAENGVGDAVSAEASLTV 104
            A NGVG AV +  +L V
Sbjct: 80  TANNGVGGAVESCGALQV 97

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 7   FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS-GTQSRYMVQEFPP 65
           F + P  TL P   A +   +T   C AR +P    +W+ NG  +  G  SRY +     
Sbjct: 7   FEEQPAHTLFPEGSAEEKVTLT---CRARANPPATYRWKMNGTELKMGPDSRYRLV---- 59
Query: 66  GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL 102
            G L+   PV+ A+D   Y+CVA N  G  VS EASL
Sbjct: 60  AGDLVISNPVK-AKDAGSYQCVATNARGTVVSREASL 95

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 7   FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS-GTQSRYMVQEFPP 65
           F+  P   + P +   K        C  +G+P P I+W+ NG  V  G   RY V +   
Sbjct: 7   FVQEPSHVMFPLDSEEKK---VKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD--- 60
Query: 66  GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL 102
            GSLL   P +  +D   Y+C+A N  G  VS EA L
Sbjct: 61  -GSLLINNPNK-TQDAGTYQCIATNSFGTIVSREAKL 95

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 7   FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS-GTQSRYMVQEFPP 65
           F+  P   + P +   K        C  +G+P P I+W+ NG  V  G   RY V +   
Sbjct: 8   FVQEPSHVMFPLDSEEKK---VKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD--- 61
Query: 66  GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL 102
            GSLL   P +  +D   Y+C+A N  G  VS EA L
Sbjct: 62  -GSLLINNPNK-TQDAGTYQCIATNSFGTIVSREAKL 96

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
           P      RN  V+     +  C   G P P+++W + GK +     +Y +QEF  G   L
Sbjct: 3   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 62
Query: 71  RIEPVRHARDDA-VYECVAENGVGDAVSAEASLTV 104
            I  V    DDA VY+  A N  G +VS  ASL V
Sbjct: 63  IIASV--TDDDATVYQVRATNQ-GGSVSGTASLEV 94

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
           P      RN  V+     +  C   G P P+++W + GK +     +Y +QEF  G   L
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 71  RIEPVRHARDDA-VYECVAENGVGDAVSAEASLTV 104
            I  V    DDA VY+  A N  G +VS  ASL V
Sbjct: 65  IIASV--TDDDATVYQVRATNQ-GGSVSGTASLEV 96

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
           P      RN  V+     +  C   G P P+++W + GK +     +Y +QEF  G   L
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 71  RIEPVRHARDDA-VYECVAENGVGDAVSAEASLTV 104
            I  V    DDA VY+  A N  G +VS  ASL V
Sbjct: 65  IIASV--TDDDATVYQVRATNQ-GGSVSGTASLEV 96

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 18  RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRH 77
           ++   KAG +T  YC+   +P+    + KNGK V+G     + +     G  L  +    
Sbjct: 220 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTL- 278
Query: 78  ARDDAVYECVAENGVGDAVSAEASLTVYEG---EEKP 111
             D+ VY C  +NGVG        LTV      E+KP
Sbjct: 279 PEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKP 315

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 13  ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRI 72
           I  +PR+  V  G    F C   G+P+P + W + G+ +S T +R+ V       S   I
Sbjct: 11  ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLS-TSARHQVTT-TKYKSTFEI 68
Query: 73  EPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
             V+ A D+  Y  V EN  G    AE +LT+
Sbjct: 69  SSVQ-ASDEGNYSVVVENSEGKQ-EAEFTLTI 98

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 13  ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRI 72
           I  +PR+  V  G    F C   G+P+P + W + G+ +S T +R+ V       S   I
Sbjct: 17  ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLS-TSARHQVTT-TKYKSTFEI 74
Query: 73  EPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
             V+ A D+  Y  V EN  G    AE +LT+
Sbjct: 75  SSVQ-ASDEGNYSVVVENSEGKQ-EAEFTLTI 104

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P    + P  Q V  G    F C   G+PI  + W K+GK +  ++            S+
Sbjct: 313 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE------------SV 360
Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEAS 101
           LRIE V+   D  +Y+C   N   D  SAEAS
Sbjct: 361 LRIESVKK-EDKGMYQCFVRN---DRESAEAS 388

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P    + P  Q V  G    F C   G+PI  + W K+GK +  ++            S+
Sbjct: 307 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE------------SV 354
Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEAS 101
           LRIE V+   D  +Y+C   N   D  SAEAS
Sbjct: 355 LRIESVKK-EDKGMYQCFVRN---DRESAEAS 382

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P    + P  Q V  G    F C   G+PI  + W K+GK +  ++            S+
Sbjct: 310 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE------------SV 357
Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEAS 101
           LRIE V+   D  +Y+C   N   D  SAEAS
Sbjct: 358 LRIESVKK-EDKGMYQCFVRN---DRESAEAS 385

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 32  CIARGDPIPVIQWRKNGKRVS---GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA 88
           C AR  P    +W+ NG  +    G++ + +      GG+L+ + P + A+D  VY+C+A
Sbjct: 28  CRARASPPATYRWKMNGTEMKLEPGSRHQLV------GGNLVIMNPTK-AQDAGVYQCLA 80
Query: 89  ENGVGDAVSAEASL 102
            N VG  VS EA L
Sbjct: 81  SNPVGTVVSREAIL 94

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 22  VKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD 81
           V  G    F C A GDP P I W    K +   +S   +  FP G   +R   V   +D+
Sbjct: 397 VDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQV---QDN 453
Query: 82  AVYECVAENGVGD 94
             Y C+A N  G+
Sbjct: 454 GTYLCIAANAGGN 466

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P +I ++ ++     G   +  C A G+P+P I+WRK  + +  T       E    G++
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST------AEISTSGAV 166
Query: 70  LRIEPVRHARDDAVYECVAEN 90
           L+I  ++   D+ +YEC AEN
Sbjct: 167 LKIFNIQ-LEDEGIYECEAEN 186

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 10  PPEITLRPR--NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           PP +  R    N     G   +  C A G P P + W K+G+ +   +       F    
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 253
Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
           S L I  V    D+A Y C+AEN  G+   A   L V+
Sbjct: 254 SELTIRNV-DKNDEAEYVCIAENKAGEQ-DASIHLKVF 289

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
           P I    ++  V +  +  F   A G+P P   W K+GK ++    +Y + E   GG  L
Sbjct: 7   PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAIT-QGGKYKLSE-DKGGFFL 64
Query: 71  RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
            I       D  +Y C  +N  G +VS+   LT+
Sbjct: 65  EIHKT-DTSDSGLYTCTVKNSAG-SVSSSCKLTI 96

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS-GTQSRYMVQEFPPGGSL 69
          P     P +  V+ G +    C   G P P + W+ +GK V   +  + +V+E   G   
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN--GVHS 67
Query: 70 LRIEPVRHARDDAVYECVAENGVG 93
          L IEPV  +RD  +Y C+A N  G
Sbjct: 68 LIIEPVT-SRDAGIYTCIATNRAG 90

>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1 Length = 218

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 12  EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
           +IT+ P ++AV AG      C A G P    QW K            M +E P G +   
Sbjct: 20  KITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFK------------MNKEIPNGNTSEL 67
Query: 72  IEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           I    H +D   Y C   N      S  + L V
Sbjct: 68  IFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV 100

>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
           P  +   ++ AV  G      C  RG P+P I W  NG+ +     +Y       G + L
Sbjct: 12  PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI-----QYARSTCEAGVAEL 66
Query: 71  RIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
            I+      D   Y C+AEN +G  VS  A +TV+
Sbjct: 67  HIQDAL-PEDHGTYTCLAENALGQ-VSCSAWVTVH 99

>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast Growth Factor Length = 104

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
          +  R  AV A     F C A G+P+P ++W KNGK           QE   GG  +R   
Sbjct: 17 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 68
Query: 72 ----IEPVRHARDDAVYECVAENGVGD 94
              +E V    D   Y CV EN  G 
Sbjct: 69 WSLIMESVV-PSDKGNYTCVVENEYGS 94

>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2 Length = 105

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
          +  R  AV A     F C A G+P+P ++W KNGK           QE   GG  +R   
Sbjct: 18 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 69
Query: 72 ----IEPVRHARDDAVYECVAENGVGD 94
              +E V    D   Y CV EN  G 
Sbjct: 70 WSLIMESVV-PSDKGNYTCVVENEYGS 95

>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain Length = 100

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
          +  R  AV A     F C A G+P+P ++W KNGK           QE   GG  +R   
Sbjct: 13 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 64
Query: 72 ----IEPVRHARDDAVYECVAENGVGD 94
              +E V    D   Y CV EN  G 
Sbjct: 65 WSLIMESVV-PSDKGNYTCVVENEYGS 90

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 8  LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
          + PP     P N ++  G          G P P + W  NG+ V       M+     G 
Sbjct: 3  MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVS-EKGL 61
Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDA 95
            L  E VR A D   Y CVA+N  G+A
Sbjct: 62 HSLIFEVVR-ASDAGAYACVAKNRAGEA 88

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 15  LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
           +  R  AV A     F C A G+P+P ++W KNGK           QE   GG  +R   
Sbjct: 24  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 75
Query: 72  ----IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
               +E V    D   Y CV EN  G +++    L V E
Sbjct: 76  WSLIMESVV-PSDKGNYTCVVENEYG-SINHTYHLDVVE 112

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 15  LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
           +  R  AV A     F C A G+P+P ++W KNGK           QE   GG  +R   
Sbjct: 14  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 65
Query: 72  ----IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
               +E V    D   Y CV EN  G +++    L V E
Sbjct: 66  WSLIMESVV-PSDKGNYTCVVENEYG-SINHTYHLDVVE 102

>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The Fibroblast Growth Factor Receptor Length = 190

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK--NG--KRVSGTQSRYMVQEFPPG 66
           P+IT   R++    G     YC + G P P   WRK  NG  + +S +  R+ +      
Sbjct: 93  PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIIN-KEN 151
Query: 67  GSLLRIEPVRHARDDAVYECVAENGVGDA 95
            + L I  ++   D   YEC A N +G A
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGSA 180

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 15  LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
           +  R  AV A     F C A G+P+P ++W KNGK           QE   GG  +R   
Sbjct: 16  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 67
Query: 72  ----IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
               +E V    D   Y CV EN  G +++    L V E
Sbjct: 68  WSLIMESVV-PSDKGNYTCVVENEYG-SINHTYHLDVVE 104

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 15  LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
           +  R  AV A     F C A G+P+P ++W KNGK           QE   GG  +R   
Sbjct: 16  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 67
Query: 72  ----IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
               +E V    D   Y CV EN  G +++    L V E
Sbjct: 68  WSLIMESVV-PSDKGNYTCVVENEYG-SINHTYHLDVVE 104

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 15  LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
           +  R  AV A     F C A G+P+P ++W KNGK           QE   GG  +R   
Sbjct: 16  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 67
Query: 72  ----IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
               +E V    D   Y CV EN  G +++    L V E
Sbjct: 68  WSLIMESVV-PSDKGNYTCVVENEYG-SINHTYHLDVVE 104

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 15  LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR--- 71
           +  R  AV A     F C A G+P+P ++W KNGK           QE   GG  +R   
Sbjct: 15  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK--------QEHRIGGYKVRNQH 66
Query: 72  ----IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
               +E V    D   Y CV EN  G +++    L V E
Sbjct: 67  WSLIMESVV-PSDKGNYTCVVENEYG-SINHTYHLDVVE 103

>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r Mutant Complex Length = 109

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 9  DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
           PP    RPR   V +G      C+  G+P PV+ W K G++++ ++      +    G 
Sbjct: 13 SPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 72
Query: 69 LLRIEPVRHARDDAVYECVAEN 90
          LL         D  VY C A N
Sbjct: 73 LLT---AALPTDAGVYVCRARN 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	111
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-35
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-22
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-30
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	7e-24
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	4e-30
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-26
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-29
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-29
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-23
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-20
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	6e-28
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-20
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-27
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-26
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	7e-19
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-26
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-26
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-19
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-25
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-25
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-21
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-25
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-21
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-25
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-25
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-25
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-21
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	6e-25
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	6e-25
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	8e-25
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-20
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	8e-25
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-24
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-22
2ens_A	96	Advanced glycosylation END product-specific recept	2e-24
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-24
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	5e-24
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-24
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-20
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	9e-19
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-15
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	8e-24
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	8e-18
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-23
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-23
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-23
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-22
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-20
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	8e-23
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-17
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	8e-23
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-22
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-21
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	8e-19
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-22
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-22
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-22
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-22
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-21
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-20
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-18
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-22
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-19
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-22
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-08
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-08
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-22
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	9e-19
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-22
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-20
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-20
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-19
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-19
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-18
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-22
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-17
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-22
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	8e-20
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-19
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-14
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-21
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-21
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-18
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-21
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	7e-20
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-21
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	6e-11
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-21
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-19
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-21
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	4e-21
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-17
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-21
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	8e-21
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-18
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-10
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	5e-21
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-11
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-21
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	8e-20
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-18
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-12
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-21
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-16
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	5e-12
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-20
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-20
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-20
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-19
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-17
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-11
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	3e-20
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-20
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-18
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-18
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-15
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-15
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-12
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	4e-20
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	7e-20
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-19
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-19
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-14
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	9e-11
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-19
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	4e-19
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	7e-19
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-18
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-14
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-18
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-13
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-08
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-18
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-14
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-18
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	9e-15
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	9e-18
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-08
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-17
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-17
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	3e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-17
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-17
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-16
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-16
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-15
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-13
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-08
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	9e-17
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-16
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-05
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-16
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-05
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-16
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-16
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-08
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-13
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	6e-16
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	8e-16
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-15
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-13
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	9e-16
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-15
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-14
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-14
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	9e-11
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	4e-15
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	8e-15
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-14
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	8e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-15
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-14
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-14
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-13
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-11
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-14
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-14
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-09
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-14
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-14
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	6e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-14
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	7e-14
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-12
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-09
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-13
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-13
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-13
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-09
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-08
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-13
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	6e-12
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	4e-11
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-13
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-13
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-13
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-12
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	9e-11
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-13
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-13
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-13
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-13
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-13
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	4e-13
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-12
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-12
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	3e-06
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-04
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-12
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	9e-10
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-12
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	4e-12
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-04
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	4e-12
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-12
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	6e-12
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-07
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	6e-12
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-12
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-07
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-06
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-06
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-11
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-06
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-11
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	8e-04
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-11
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-11
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	6e-10
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-07
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	5e-11
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	7e-07
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	7e-11
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-10
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-10
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-10
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-08
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-07
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-09
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-09
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-09
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-09
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	5e-09
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-07
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	5e-09
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	3e-07
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	8e-09
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-08
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-08
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	4e-06
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-08
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	2e-08
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	4e-08
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	7e-08
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-04
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	7e-08
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	9e-08
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	1e-07
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-07
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	9e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-07
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	7e-05
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	2e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	9e-06
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	4e-06
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	6e-06
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	7e-06
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	2e-04
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	7e-06
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	1e-05
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-05
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-05
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	4e-05
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	7e-05
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	4e-04
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	6e-04
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	7e-04

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  118 bits (298), Expect = 3e-35
 Identities = 73/102 (71%), Positives = 84/102 (82%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           PPEI  +P+NQ V+ GG+ SFYC ARGDP P I WRKNGK+VSGTQSRY V E P G S+
Sbjct: 6   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 65

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           LRIEPVR  RDDA YECVAENGVGDAVSA+A+LT+YEG++ P
Sbjct: 66  LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTP 107

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 86.0 bits (213), Expect = 2e-22
 Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P IT  P  + ++ G      C A G+P P I W KN  +V  +  RY +      G  
Sbjct: 110 FPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL----KDGF- 164

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L+IE  R   D   YECVAEN +G   S   +L V  
Sbjct: 165 LQIENSR-EEDQGKYECVAENSMGTEHSKATNLYVKV 200

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  105 bits (264), Expect = 3e-30
 Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 6   RFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP 65
           +    P IT            + +F C     P P I W +N   +    +RY ++    
Sbjct: 3   KLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIR---E 59

Query: 66  GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
            G LL I  V    DD +Y C A NGVG AV +  +L V  
Sbjct: 60  NGQLLTILSVE-DSDDGIYCCTANNGVGGAVESCGALQVKM 99

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 89.4 bits (222), Expect = 7e-24
 Identities = 33/95 (34%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P+IT  P N  +  G      C   G+P P + W K    +    SR  V E    GS 
Sbjct: 100 KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALR-ENSRIAVLE---SGS- 154

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           LRI  V+   D   Y CVA+N +G A S    L V
Sbjct: 155 LRIHNVQKE-DAGQYRCVAKNSLGTAYSKLVKLEV 188

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  106 bits (265), Expect = 4e-30
 Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 2/102 (1%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           PP  T  P +Q   +GG+ SF C A GDP P I W K GK+VS  Q   +++     GS+
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVS-NQRFEVIEFDDGSGSV 64

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           LRI+P+R  RD+A+YECVA N VG  +S    LTV   ++ P
Sbjct: 65  LRIQPLRTPRDEAIYECVASNNVG-EISVSTRLTVLREDQIP 105

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 96.0 bits (239), Expect = 2e-26
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 2/103 (1%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS- 68
            P I + P+ + V+     +  C A G+P P I W K+   V  + +   +++       
Sbjct: 108 FPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG 167

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
            L+IE    + D   YECVA N  G   SA A+L V   +   
Sbjct: 168 ALQIEQSEES-DQGKYECVATNSAGTRYSAPANLYVRGTKHHH 209

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score =  101 bits (254), Expect = 1e-29
 Identities = 41/99 (41%), Positives = 50/99 (50%), Gaps = 4/99 (4%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP-PGGS 68
           PP I   P +  V  G   +  C A G P P I+W K G+RV   +          P GS
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 69  L--LRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTV 104
           L  LRI   R +R D  VY CVA N +G+AVS +ASL V
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  106 bits (265), Expect = 2e-29
 Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 2/102 (1%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           PP     P++Q   +GG+ SF C A GDP P + W K GK+V+ +Q    ++     G++
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN-SQRFETIEFDESAGAV 64

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           LRI+P+R  RD+ VYECVA+N VG  ++  A LTV   ++ P
Sbjct: 65  LRIQPLRTPRDENVYECVAQNSVG-EITVHAKLTVLREDQLP 105

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 91.0 bits (226), Expect = 1e-23
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P I + P+ + V+     +  C A G+P P I W K+   V  + S   +++   G   
Sbjct: 108 FPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA-- 165

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           L+IE      D   YECVA N  G   S+ A+L V      P
Sbjct: 166 LQIESSE-ETDQGKYECVATNSAGVRYSSPANLYVRVQNVAP 206

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 82.2 bits (203), Expect = 2e-20
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 10/97 (10%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P  ++ P +  +  GG  +  C+A G P+P ++W +  + ++           P G ++
Sbjct: 205 APRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD------MPVGRNV 258

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L +      +D A Y CVA + +G    A A +TV  
Sbjct: 259 LEL---TDVKDSANYTCVAMSSLGVI-EAVAQITVKS 291

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 99.5 bits (248), Expect = 6e-28
 Identities = 24/97 (24%), Positives = 32/97 (32%), Gaps = 1/97 (1%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
             ++   P    V  G      C   G   P IQW K+G  V      Y+          
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L ++ V    D   Y C  E+G    +S    LTV  
Sbjct: 62  LSLKSVER-SDAGRYWCQVEDGGETEISQPVWLTVEG 97

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 80.2 bits (198), Expect = 2e-20
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 13/96 (13%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGS 68
            P  T+ P++ AV         C A G P PV I W +   ++ G           P  S
Sbjct: 98  VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP---------APSPS 148

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           +L +  V       ++ C A N  G A S  A++ +
Sbjct: 149 VLNVTGV---TQSTMFSCEAHNLKGLASSRTATVHL 181

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 96.3 bits (240), Expect = 1e-27
 Identities = 37/97 (38%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           PP I   P NQ +   G     C A GDP+PVI W K G    G   R  +QE    G+ 
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE---QGT- 63

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L+I+ +R   D   Y CVA +  G   S  A L V E
Sbjct: 64  LQIKNLR-ISDTGTYTCVATSSSG-ETSWSAVLDVTE 98

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 93.2 bits (232), Expect = 3e-26
 Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P     P +  V+ G +    C   G P P + W+ +GK V    S + +     G   
Sbjct: 9   RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVR-PDSAHKMLVRENGVHS 67

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           L IEPV  +RD  +Y C+A N  G   S    L V   E  P
Sbjct: 68  LIIEPVT-SRDAGIYTCIATNRAGQN-SFSLELVVAAKESGP 107

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 95.3 bits (237), Expect = 3e-26
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 3/99 (3%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRK-NGKRVSGTQSRYMVQEFPPGG 67
             ++ + P    +  G    F C   GD     I W   NG+++S  Q R  V       
Sbjct: 2   VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           S L I       D  +Y+CV     G    A  ++ +++
Sbjct: 62  STLTIYNAN-IDDAGIYKCVVTAEDGTQSEATVNVKIFQ 99

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 77.6 bits (191), Expect = 3e-19
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 7/96 (7%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS-RYMVQEFPPGGS 68
                  P  Q  K G      C       P I W+  G+ V   +  R++V       +
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS----NN 155

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
            L+I  ++   D+  Y C               + V
Sbjct: 156 YLQIRGIK-KTDEGTYRCEGRILAR-GEINFKDIQV 189

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 91.6 bits (228), Expect = 1e-25
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
              I  +PR+  V  G    F C   G+P+P + W + G+ +S T +R+ V       + 
Sbjct: 14  AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLS-TSARHQVTTTKYKST- 71

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
             I  V+ A D+  Y  V EN  G    AE +LT+ +
Sbjct: 72  FEISSVQ-ASDEGNYSVVVENSEG-KQEAEFTLTIQK 106

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 93.6 bits (233), Expect = 1e-25
 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P      RN  V+     +  C   G P P+++W + GK +     +Y +QEF  G   
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEE 109
           L I  V    D  VY+  A N  G +VS  ASL V    +
Sbjct: 64  LIIASVT-DDDATVYQVRATNQGG-SVSGTASLEVEVPAK 101

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 83.6 bits (207), Expect = 1e-21
 Identities = 22/99 (22%), Positives = 30/99 (30%), Gaps = 3/99 (3%)

Query: 8   LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           +  P+            G + S      G P PVI W+K    +      Y V       
Sbjct: 102 IHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-GHYQVIVTRSFT 160

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           SL+    V    D   Y   A+N  G        L V +
Sbjct: 161 SLVFPNGVERK-DAGFYVVCAKNRFGID-QKTVELDVAD 197

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 93.8 bits (233), Expect = 2e-25
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG-S 68
            P I   P +  VK     +  C   G P P I+W K+G+ VS  + +    +F  G   
Sbjct: 9   SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
             R    +  +D   Y CVA+N VG AVS  ASL +
Sbjct: 69  FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 84.5 bits (209), Expect = 1e-21
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCI-ARGDPIPVIQWRKNGKRVSGTQSRYMVQE----FP 64
             +  + P++  V  G      C   +G P P + W K+G  +   ++            
Sbjct: 108 RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV 167

Query: 65  PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
            GG+L  I  V    D+  Y+C+A+N VG   S+ A L V  
Sbjct: 168 DGGNL-LISNVE-PIDEGNYKCIAQNLVGTRESSYAKLIVQV 207

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 90.9 bits (226), Expect = 2e-25
 Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P   ++ ++  +  G   +F C   G+P P I W K+GK++S     Y +Q    G   
Sbjct: 8   APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           L         DD  Y  +A N  G   S    L V      P
Sbjct: 68  LHTTASTLD-DDGNYTIMAANPQGRI-SCTGRLMVQAVNSGP 107

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 90.5 bits (225), Expect = 2e-25
 Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 8   LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           + PP     P N ++  G          G P P + W  NG+ V       M+     G 
Sbjct: 3   MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVS-EKGL 61

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGE 108
             L  E VR A D   Y CVA+N  G+A +    L V   E
Sbjct: 62  HSLIFEVVR-ASDAGAYACVAKNRAGEA-TFTVQLDVLAKE 100

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 92.5 bits (230), Expect = 4e-25
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 2/102 (1%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P  T   ++  V  G   +F     G P+P + W ++G+ +S +    +   F  G + 
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           L I  V    +   Y   A NG G   ++ A L V      P
Sbjct: 65  LTIPAVT-KANSGRYSLKATNGSG-QATSTAELLVKAETAPP 104

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 83.2 bits (206), Expect = 2e-21
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           PP    R ++  V+ G          G P PV+++ ++G  +  +    + QE       
Sbjct: 103 PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE--GDLYS 160

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           L I       D   Y   A N VG A ++ A L V
Sbjct: 161 LLIAEAYPE-DSGTYSVNATNSVGRA-TSTAELLV 193

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 89.8 bits (223), Expect = 6e-25
 Identities = 35/97 (36%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           PP I   P NQ V   G     C+A G P+P I WRK+G  VS   SR    E    G  
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE---NGV- 63

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L+I   +   D   Y C+A    G+A +  A + V E
Sbjct: 64  LQIRYAK-LGDTGRYTCIASTPSGEA-TWSAYIEVQE 98

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 89.8 bits (223), Expect = 6e-25
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 2/105 (1%)

Query: 2   YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
           +        P    +P+++ V  G      C     P P + W++N + V     R  + 
Sbjct: 7   HHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLY 66

Query: 62  EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           +   G   L I+ V   +D   Y   A N  G   +    L V  
Sbjct: 67  QDNTGRVTLLIKDVN-KKDAGWYTVSAVNEAG-VTTCNTRLDVTA 109

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 92.3 bits (229), Expect = 8e-25
 Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 12/97 (12%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
             +IT+ P ++AV AG      C A G P    QW K  K +    +           S 
Sbjct: 18  GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT-----------SE 66

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L    V   +D   Y C   N      S  + L V +
Sbjct: 67  LIFNAVH-VKDAGFYVCRVNNNFTFEFSQWSQLDVCD 102

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 79.9 bits (197), Expect = 5e-20
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 12/97 (12%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
             +I + P +Q +  G      C+A G PIP  QW KN   ++                L
Sbjct: 118 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----------TKKL 166

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
             +  V        Y C   N      S +  + + E
Sbjct: 167 YMVPYVD-LEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 89.3 bits (222), Expect = 8e-25
 Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P IT    NQ    G      C A G+P P I W K+ + +    S  +++    G   
Sbjct: 10  APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED-SGIVLK---DGNRN 65

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           L I  VR   D+ +Y C A + +G     EA   +   +EK 
Sbjct: 66  LTIRRVRKE-DEGLYTCQACSVLG-CAKVEAFFIIEGAQEKT 105

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 91.4 bits (227), Expect = 1e-24
 Identities = 43/103 (41%), Positives = 53/103 (51%), Gaps = 10/103 (9%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS----GTQSRYMVQEFPP 65
           PP I   P +  V  G   +  C A G P P I+W K G+RV       +S  M+    P
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL---P 65

Query: 66  GGSL--LRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTVY 105
            GSL  LRI   R +R D  VY CVA N +G+AVS +ASL V 
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA 108

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 85.6 bits (212), Expect = 3e-22
 Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
             +    P +  V  G      C   RG P P I W+K+G  +     R  +     GG 
Sbjct: 111 RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI----RGGK 166

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L  I   R   D   Y CV  N VG+  S  A LTV E
Sbjct: 167 L-MITYTR-KSDAGKYVCVGTNMVGERESEVAELTVLE 202

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 87.9 bits (218), Expect = 2e-24
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 13/100 (13%)

Query: 8   LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           L+  ++ + P   AV  GG  +  C     P P I W K+G  +             P  
Sbjct: 8   LEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP-----------LPPS 56

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDA-VSAEASLTVYE 106
            +L +  +    D   Y CVA +       S   S+++ E
Sbjct: 57  PVLILPEIGPQ-DQGTYSCVATHSSHGPQESRAVSISIIE 95

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 87.7 bits (218), Expect = 2e-24
 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P I    ++  V +  +  F   A G+P P   W K+GK +  TQ          GG  
Sbjct: 6   KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAI--TQGGKYKLSEDKGGFF 63

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           L I       D  +Y C  +N  G +VS+   LT+
Sbjct: 64  LEIHKTD-TSDSGLYTCTVKNSAG-SVSSSCKLTI 96

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 87.0 bits (216), Expect = 5e-24
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P  +   ++ AV  G      C  RG P+P I W  NG+ +   +S         G + 
Sbjct: 11  APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE-----AGVAE 65

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
           L I+      D   Y C+AEN +G  VS  A +TV+
Sbjct: 66  LHIQDAL-PEDHGTYTCLAENALG-QVSCSAWVTVH 99

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 93.1 bits (231), Expect = 5e-24
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 3   RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQE 62
               +   P      ++   KAG +T  YC+   +P+    + KNGK V+G     + + 
Sbjct: 205 DNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRH 264

Query: 63  FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
               G  L  +      D+ VY C  +NGVG        LTV  
Sbjct: 265 NRTSGKRLLFKTTL-PEDEGVYTCEVDNGVGKPQKHSLKLTVVS 307

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 82.3 bits (203), Expect = 5e-20
 Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 10/102 (9%)

Query: 4   KVRFLDPPEITLRPRNQ-AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQE 62
           K+  +  P+   +P     VK G   +  C   G P P + W  N K +SG   R  V  
Sbjct: 302 KLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG--GRATVT- 358

Query: 63  FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
                S L I+ V++  D   Y C A N  GD    E  + V
Sbjct: 359 ----DSGLVIKGVKNG-DKGYYGCRATNEHGD-KYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 78.8 bits (194), Expect = 9e-19
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGS 68
            P +  +P     +    T   CI  G+   V   W+K+GK  +  +    ++     GS
Sbjct: 6   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR--KDEGS 63

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           L      + + D+  Y+C AE   G A S   S   
Sbjct: 64  L-VFLRPQAS-DEGHYQCFAETPAGVASSRVISFRK 97

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 68.0 bits (166), Expect = 6e-15
 Identities = 20/110 (18%), Positives = 29/110 (26%), Gaps = 13/110 (11%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYC-IARGDPIPVIQWRKNGK------RVSGTQS 56
             R         +   +    G      C +    P P+I W+K          V+    
Sbjct: 94  SFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDR 153

Query: 57  RYMVQEFPPGGSLLRIEPVR--HARDDAVYECVAENGVGDAVSAEASLTV 104
           R       P G+L     V      D   Y C A+N   D         +
Sbjct: 154 RITAG---PDGNL-YFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEI 199

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 89.1 bits (221), Expect = 8e-24
 Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS---GTQSRYMVQEFPPG 66
            P+IT   R++    G     YC + G P P   WRK    V       S          
Sbjct: 92  APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKEN 151

Query: 67  GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
            + L I  ++   D   YEC A N +G + S    L V
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIG-SASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 73.7 bits (181), Expect = 8e-18
 Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 12/100 (12%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQ--WRKNGKRVSGTQSRYMVQEFPPG 66
           + P I          +    +  C        ++   W KNG  ++ T+           
Sbjct: 2   NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-------S 54

Query: 67  GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
               RI   R A D   Y CV          A A++ V  
Sbjct: 55  NMEYRINKPR-AEDSGEYHCVYHFVSA--PKANATIEVKA 91

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 85.9 bits (213), Expect = 1e-23
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 12/97 (12%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
             +I + P +Q +  G      C+A G PIP  QW KN   ++    +           L
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK-----------L 51

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
             +  V        Y C   N      S +  + + E
Sbjct: 52  YMVPYVD-LEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 85.8 bits (213), Expect = 2e-23
 Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           PP   +   +Q+V+ G         +G+P PV+ W +N + V   Q R+  +    G   
Sbjct: 5   PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEA-EGGLCR 63

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGE 108
           LRI       D   Y C A N  G     EA L V  GE
Sbjct: 64  LRILAAE-RGDAGFYTCKAVNEYGAR-QCEARLEV-RGE 99

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 90.2 bits (224), Expect = 2e-23
 Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 4/97 (4%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           PP   L+P +  +  G   +F C   G     I W K+ + +      Y +       + 
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR-PGGNYKMTLVENTAT- 62

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L +  V    D   Y C A N  G   S  A L V E
Sbjct: 63  LTVLKVTKG-DAGQYTCYASNVAGKD-SCSAQLGVQE 97

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 85.6 bits (212), Expect = 9e-22
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
            ++  +PP    +P       G      C  +G P   + W K+ + +   +   ++ E 
Sbjct: 186 SLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE- 244

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
               + + I  V  A D   Y+C A N VG   +   S+T+
Sbjct: 245 -NFLTSIHILNVDSA-DIGEYQCKASNDVGSY-TCVGSITL 282

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 82.1 bits (203), Expect = 2e-20
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 4   KVRFLDPPEITLRPR-NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQE 62
           ++   +PP    +   ++ VK    T + C   G P   + W K+   +    S++ +  
Sbjct: 92  QLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ-ESSKFRMSF 150

Query: 63  FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                  L +  +    D   Y C A N  G + S+  SL V E
Sbjct: 151 VESVAV-LEMYNLS-VEDSGDYTCEAHNAAG-SASSSTSLKVKE 191

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 88.7 bits (220), Expect = 8e-23
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P      RN  V+     +  C   G P P+++W + GK +     +Y +QEF  G   
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L I  V    D  VY+  A N  G +VS  ASL V  
Sbjct: 64  LIIASVTDD-DATVYQVRATNQGG-SVSGTASLEVEV 98

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 74.4 bits (183), Expect = 2e-17
 Identities = 22/99 (22%), Positives = 31/99 (31%), Gaps = 3/99 (3%)

Query: 8   LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           +  P+            G + S      G P PVI W+K    +      Y V       
Sbjct: 102 IHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-GHYQVIVTRSFT 160

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           SL+    V   +D   Y   A+N  G        L V +
Sbjct: 161 SLVFPNGVER-KDAGFYVVCAKNRFGID-QKTVELDVAD 197

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 85.7 bits (212), Expect = 8e-23
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 3/108 (2%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
           + +    P  T    +  V  G    F C   G P P + W K+   V  +   + +   
Sbjct: 35  EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES-RHFQIDYD 93

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
             G   L I  V    DDA Y C A N +G+A +  A L V    ++ 
Sbjct: 94  EEGNCSLTISEVC-GDDDAKYTCKAVNSLGEA-TCTAELLVETMGKEG 139

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 88.3 bits (219), Expect = 1e-22
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
             ++T+      +  G    F C A G+P  +  +   G+++  T  R +VQ+     S 
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIIST-QRVVVQK-EGVRSR 61

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L I       D  +Y C A +  G    A   L +Y+
Sbjct: 62  LTIYNANIE-DAGIYRCQATDAKGQTQEATVVLEIYQ 97

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 84.5 bits (209), Expect = 2e-21
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 8/99 (8%)

Query: 10  PPEITL--RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           PP I++  +  N   + G   +F C A G P P I W +NGK +     +Y+++      
Sbjct: 192 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-EKYILKG---SN 247

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           + L +  + ++ D   Y C A N  G+    +A L V+ 
Sbjct: 248 TELTVRNIINS-DGGPYVCRATNKAGED-EKQAFLQVFV 284

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 77.9 bits (192), Expect = 8e-19
 Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 6/102 (5%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS-RYMVQE 62
            +              Q  K G      C     P P + W  + + V+     R+ +  
Sbjct: 92  VLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA 151

Query: 63  FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
                + L+I  +    D+ +Y C         +     + +
Sbjct: 152 ---NNN-LQILNIN-KSDEGIYRCEGRVEARGEIDFRDIIVI 188

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 83.3 bits (206), Expect = 2e-22
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 6   RFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP 65
            + +  ++    R  AV A     F C A G+P+P ++W KNGK     + R    +   
Sbjct: 6   YWTNTEKM--EKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK-QEHRIGGYKVRN 62

Query: 66  GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
               L +E V  + D   Y CV EN  G +++    L V
Sbjct: 63  QHWSLIMESVVPS-DKGNYTCVVENEYG-SINHTYHLDV 99

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 88.7 bits (220), Expect = 2e-22
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ--SRYMVQ 61
           KV    P     +  +     G      C   GDP+P I W+KN + ++     SR +V 
Sbjct: 115 KVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVL 174

Query: 62  EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
              P G+ L+I  ++   D  VY C A N        EA + +  
Sbjct: 175 ---PSGA-LQISRLQ-PGDSGVYRCSARNPASTRTGNEAEVRILS 214

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 86.8 bits (215), Expect = 1e-21
 Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 5   VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
           +  L PP     P N          F C   G P+P + W KNG  V      + +    
Sbjct: 307 LTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVI-PSDYFQIVG-- 363

Query: 65  PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
             GS LRI  V  + D+  Y+CVAEN  G+   + A L V +
Sbjct: 364 --GSNLRILGVVKS-DEGFYQCVAENEAGN-AQSSAQLIVPK 401

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 83.0 bits (205), Expect = 3e-20
 Identities = 26/97 (26%), Positives = 32/97 (32%), Gaps = 6/97 (6%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
                 RP N     G      C   G P P   W +  + +     +Y +     GGS 
Sbjct: 221 QLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL----GGSN 276

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L I  V    D   Y CV        +SA A LTV  
Sbjct: 277 LLISNVT-DDDSGTYTCVVTYKNE-NISASAELTVLV 311

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 78.7 bits (194), Expect = 1e-18
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
                  P +     GG     C A  D  +PVI+W+K+G  ++        Q   P GS
Sbjct: 21  SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQL--PNGS 78

Query: 69  LLRIEPVRHAR----DDAVYECVAENG-VGDAVSAEASLTVYE 106
            L I+ + H+R    D+ +Y+C A  G  G  +S  A + V  
Sbjct: 79  -LLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG 120

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 86.1 bits (213), Expect = 3e-22
 Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 6   RFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP 65
            +  P  +    +  AV A     F C A G+P P I W KNG+     + R    +   
Sbjct: 13  YWTRPERM--DKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFR-GEHRIGGIKLRH 69

Query: 66  GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
               L +E V  + D   Y CV EN  G ++    +L V E     
Sbjct: 70  QQWSLVMESVVPS-DRGNYTCVVENKFG-SIRQTYTLDVLERSPHR 113

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 78.4 bits (193), Expect = 3e-19
 Identities = 27/112 (24%), Positives = 36/112 (32%), Gaps = 12/112 (10%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK----------RVSGTQSRYM 59
           P      P NQ    G    F+C    D  P IQW K+ +              T  +  
Sbjct: 114 PILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSW 173

Query: 60  VQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           + E       LR+  V    D   Y C A N +G A      L+V+      
Sbjct: 174 ISESVEADVRLRLANVSER-DGGEYLCRATNFIGVA-EKAFWLSVHGPRAAE 223

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 89.0 bits (220), Expect = 3e-22
 Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
            V     P IT    NQ    G      C A G+P P I W K+ + +       +    
Sbjct: 660 TVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD-- 717

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
             G   L I  VR   D+ +Y C A + +G A   EA   +   +EK 
Sbjct: 718 --GNRNLTIRRVRKE-DEGLYTCQACSVLGCA-KVEAFFIIEGAQEKT 761

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 70.2 bits (171), Expect = 1e-15
 Identities = 26/107 (24%), Positives = 36/107 (33%), Gaps = 12/107 (11%)

Query: 4   KVRFLDPPEITL---RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMV 60
            VR  + P +              G          G P P I+W KNG  +    S + +
Sbjct: 321 FVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLE---SNHTI 377

Query: 61  QEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAV-SAEASLTVYE 106
           +     G +L I  V   RD   Y  +  N +     S   SL VY 
Sbjct: 378 KA----GHVLTIMEVS-ERDTGNYTVILTNPISKEKQSHVVSLVVYV 419

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 61.3 bits (148), Expect = 2e-12
 Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 10/105 (9%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK--------NGKRVSGTQSRYMVQ 61
              +        +  G      C AR +    I +          + K V+         
Sbjct: 224 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 283

Query: 62  EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           E     S L I+ V    D  +Y C A +G+         + V+E
Sbjct: 284 EMKKFLSTLTIDGVT-RSDQGLYTCAASSGLMTK-KNSTFVRVHE 326

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 60.5 bits (146), Expect = 3e-12
 Identities = 18/99 (18%), Positives = 26/99 (26%), Gaps = 5/99 (5%)

Query: 8   LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           LD P ++++     +KA       C  RG       W  N       +            
Sbjct: 29  LDLPRLSIQKDILTIKANTTLQITC--RGQRDLDWLWPNNQSGSE-QRVEVTECSDGLFC 85

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
             L I  V    D   Y+C        A      +  Y 
Sbjct: 86  KTLTIPKVI-GNDTGAYKCFYRETDL-ASVIYVYVQDYR 122

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 58.2 bits (140), Expect = 2e-11
 Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 21/124 (16%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ-------- 55
                  PEITL+P  Q        S +C A       + W K G +             
Sbjct: 544 SFHVTRGPEITLQPDMQ-PTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPV 602

Query: 56  ----------SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA-VSAEASLTV 104
                     +  M         ++ ++     +D   Y C+A++            LTV
Sbjct: 603 CKNLDTLWKLNATMFSNSTNDILIMELKNAS-LQDQGDYVCLAQDRKTKKRHCVVRQLTV 661

Query: 105 YEGE 108
            E  
Sbjct: 662 LERV 665

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 50.1 bits (119), Expect = 1e-08
 Identities = 23/141 (16%), Positives = 36/141 (25%), Gaps = 37/141 (26%)

Query: 4   KVRFLDPPEITLRPRNQ---AVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYM 59
            +    PP+I  +       + + G   +  C     P P  I W    +     +    
Sbjct: 414 SLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQA 473

Query: 60  VQEFPP-------------------------------GGSLLRIEPVRHARDDAVYECVA 88
           V    P                                 ++  +     A   A+Y+C A
Sbjct: 474 VSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQA-ANVSALYKCEA 532

Query: 89  ENGVGDAVSAEASLTVYEGEE 109
            N VG       S  V  G E
Sbjct: 533 VNKVGR-GERVISFHVTRGPE 552

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 48.2 bits (114), Expect = 5e-08
 Identities = 9/105 (8%), Positives = 20/105 (19%), Gaps = 5/105 (4%)

Query: 7   FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG 66
           F+                       C+     + V    +  ++        +  +    
Sbjct: 125 FIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWD---S 181

Query: 67  GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
                I          +  C A+       S    + V  G    
Sbjct: 182 KKGFTIPSYM-ISYAGMVFCEAKINDESYQS-IMYIVVVVGYRIY 224

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 85.1 bits (211), Expect = 3e-22
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P I    ++   K G      C   G P+P I+W + GK +  ++   M  +       
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSD--GRTHT 64

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L +       D+ VY C+A N VG+     + L +  
Sbjct: 65  LTVMTEE-QEDEGVYTCIATNEVGEV-ETSSKLLLQA 99

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 76.3 bits (188), Expect = 9e-19
 Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 6/106 (5%)

Query: 4   KVRFLDPPEITLR---PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMV 60
           K+     P+               G     + +  G P+P + W    K +    S  + 
Sbjct: 94  KLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLL--QNSENIT 151

Query: 61  QEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
            E     + L ++ V+       Y+    N  G    A   + + +
Sbjct: 152 IENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV-DAILDVEIQD 196

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 88.7 bits (220), Expect = 4e-22
 Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 4/97 (4%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           PP   L+P +  +  G   +F C   G     I W K+ + +    +  M        + 
Sbjct: 197 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN--TAT 254

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L +  V    D   Y C A N  G   S  A L V E
Sbjct: 255 LTVLKVT-KGDAGQYTCYASNVAGKD-SCSAQLGVQE 289

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 83.3 bits (206), Expect = 2e-20
 Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 4/104 (3%)

Query: 8   LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           ++PP       +     G   +  C   G P   I W K   ++  +   Y +Q      
Sbjct: 3   MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLR-SAPAYKMQFKNNVA 61

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           S L I  V H+ D   Y C AEN VG   S  A L + E +  P
Sbjct: 62  S-LVINKVDHS-DVGEYTCKAENSVGAVAS-SAVLVIKERKLPP 102

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 82.5 bits (204), Expect = 5e-20
 Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 3/99 (3%)

Query: 8   LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
             PP    +  + +   G          G     + W K+   +        +       
Sbjct: 475 KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIA 534

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           + L+        +   Y C  +N  G      A+L+V E
Sbjct: 535 T-LQFSRAE-PANAGKYTCQIKNEAGTQ-ECFATLSVLE 570

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 80.2 bits (198), Expect = 3e-19
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 4   KVRFLDPPEITLRPR-NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQE 62
           ++   +PP    +   ++ VK    T + C   G P   + W K+   +    S++ +  
Sbjct: 284 QLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ-ESSKFRMSF 342

Query: 63  FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                  L +  +    D   Y C A N  G A S+  SL V E
Sbjct: 343 VESVAV-LEMYNLSVE-DSGDYTCEAHNAAGSA-SSSTSLKVKE 383

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 80.2 bits (198), Expect = 4e-19
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 4/103 (3%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
            ++  +PP    +P       G      C  +G P   + W K+ + +  +  +Y +   
Sbjct: 378 SLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELR-SGKKYKIMSE 436

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
               S + I  V  + D   Y+C A N VG   +   S+T+  
Sbjct: 437 NFLTS-IHILNVD-SADIGEYQCKASNDVGSD-TCVGSITLKA 476

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 78.7 bits (194), Expect = 1e-18
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 4/102 (3%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           PP    + ++     G   +F C   G     + W K+G+ +    +           + 
Sbjct: 101 PPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLK-DDANLQTSFIHNVAT- 158

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           L+I           Y C A N +G A S+ A LT+ E E  P
Sbjct: 159 LQILQTD-QSHVGQYNCSASNPLGTA-SSSAKLTLSEHEVPP 198

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 84.4 bits (209), Expect = 4e-22
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 10  PPEITL--RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           PP I++  +  N   + G   +F C A G P P I W +NGK +     +Y+++      
Sbjct: 96  PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-EKYILK---GSN 151

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
           + L +  +    D   Y C A N  G+    +A L V+
Sbjct: 152 TELTVRNII-NSDGGPYVCRATNKAGED-EKQAFLQVF 187

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 71.7 bits (176), Expect = 4e-17
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 6/98 (6%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS-RYMVQEFPPGGS 68
                     Q  K G      C     P P + W  + + V+     R+ +       +
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA---NNN 58

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
            L+I  +    D+ +Y C         +     + +  
Sbjct: 59  -LQILNIN-KSDEGIYRCEGRVEARGEIDFRDIIVIVN 94

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 87.6 bits (217), Expect = 6e-22
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
            VR    P     P+N  +  G      C A G+P P +QW  NG+ +         +  
Sbjct: 306 SVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNRE-- 363

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
              G  +     +     AVY+C   N  G  + A A ++V +
Sbjct: 364 -VAGDTIIFRDTQ-ISSRAVYQCNTSNEHG-YLLANAFVSVLD 403

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 81.5 bits (201), Expect = 8e-20
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 10  PPEITLRP-RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
           PP IT +  ++  V         C A+G+P P   W +N +  +       V      G+
Sbjct: 16  PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFN-IAKDPRVSMRRRSGT 74

Query: 69  L--LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L        R    +  Y+C A N  G A+S    L V +
Sbjct: 75  LVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK 114

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 79.9 bits (197), Expect = 3e-19
 Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 10/105 (9%)

Query: 2   YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
            R   F+ P        +Q V  G      CIA G P P I W K G  +   ++++   
Sbjct: 217 ERTPSFMYPQG---TASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFEN- 272

Query: 62  EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                   LRI  V    D   Y C+A N +G  +    S+ V  
Sbjct: 273 ----FNKALRITNV-SEEDSGEYFCLASNKMGS-IRHTISVRVKA 311

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 65.3 bits (159), Expect = 6e-14
 Identities = 18/103 (17%), Positives = 27/103 (26%), Gaps = 6/103 (5%)

Query: 4   KVRFLDPPEITLRPR-NQAVKAGGITSFYC-IARGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
           +++    P           V+ G   +  C    G P PVI W  +         R    
Sbjct: 109 RLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQG 168

Query: 62  EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
                G  L    V        Y C A       +  +   T+
Sbjct: 169 ---HNGD-LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTL 207

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 85.7 bits (212), Expect = 1e-21
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRK-NGKRVSGTQSRYMVQEFPPGGS 68
            ++ + P    +  G    F C   GD     I W   NG+++S  Q R  V       S
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
            L I       D  +Y+CV     G    A  ++ +++
Sbjct: 63  TLTIYNANID-DAGIYKCVVTAEDGTQSEATVNVKIFQ 99

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 83.8 bits (207), Expect = 5e-21
 Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 10  PPEITLRPR--NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           PP +  R    N     G   +  C A G P P + W K+G+ +   +       F    
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 253

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           S L I  V    D+A Y C+AEN  G+   A   L V+ 
Sbjct: 254 SELTIRNV-DKNDEAEYVCIAENKAGEQ-DASIHLKVFA 290

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 76.8 bits (189), Expect = 2e-18
 Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 7/99 (7%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
                  P  Q  K G      C       P I W+  G+ V   +    +       + 
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL---SNNY 156

Query: 70  LRIEPVRHARDDA-VYECVAENGVGDAV-SAEASLTVYE 106
           L+I  ++  + D   Y C         +   +  + V  
Sbjct: 157 LQIRGIK--KTDEGTYRCEGRILARGEINFKDIQVIVNV 193

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 83.0 bits (205), Expect = 2e-21
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 8/96 (8%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P +I ++ ++     G   +  C A G+P+P I+WRK  + +  T       E    G++
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST------AEISTSGAV 166

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
           L+I  ++   D+ +YEC AEN  G     +A + V 
Sbjct: 167 LKIFNIQ-LEDEGIYECEAENIRG-KDKHQARIYVQ 200

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 55.7 bits (134), Expect = 6e-11
 Identities = 19/101 (18%), Positives = 26/101 (25%), Gaps = 9/101 (8%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQS--RYMVQEFPP 65
            P          VK G      C            +W  N   V  T    R++ Q    
Sbjct: 8   DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQ---T 64

Query: 66  GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
            G+L  I  V  A D   Y C   +           + +  
Sbjct: 65  NGNL-YIANVE-ASDKGNYSCFVSSPSITKSVFSKFIPLIP 103

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 83.8 bits (207), Expect = 2e-21
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 5/106 (4%)

Query: 6   RFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP 65
            + +  ++    R  AV A     F C A G+P+P ++W KNGK     + R    +   
Sbjct: 17  YWTNTEKM--EKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK-QEHRIGGYKVRN 73

Query: 66  GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
               L +E V  + D   Y CV EN  G +++    L V E     
Sbjct: 74  QHWSLIMESVVPS-DKGNYTCVVENEYG-SINHTYHLDVVERSRHR 117

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 78.4 bits (193), Expect = 2e-19
 Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 11/111 (9%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP----- 64
           P      P N +   GG   F C    D  P IQW K+ ++         +         
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177

Query: 65  ----PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
                   +L +  V  A D   Y C   N +G A +  A LTV   ++ P
Sbjct: 178 GINSSNAEVLALFNVTEA-DAGEYICKVSNYIGQA-NQSAWLTVLPKQQAP 226

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 80.4 bits (199), Expect = 3e-21
 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 4/102 (3%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P+I   P +Q V+AG     +    G       W K  K++  +     V E    GS 
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES-EHMKV-ENSENGSK 64

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           L I   R       Y  + EN +G    A+ +LTV +  + P
Sbjct: 65  LTILAAR-QEHCGCYTLLVENKLGSR-QAQVNLTVVDKPDPP 104

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 85.2 bits (211), Expect = 4e-21
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 2/99 (2%)

Query: 8   LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
              P+            G   +  C  + +P   I WR++   +    +  +        
Sbjct: 98  EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK 157

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
            +L I P     D   Y C A N +G     E  L + +
Sbjct: 158 MILEIAPTS-DNDFGRYNCTATNHIG-TRFQEYILALAD 194

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 75.2 bits (185), Expect = 1e-17
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 10/100 (10%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS------RYMVQEFP 64
           P I  + +N+     G  +  C A G+PIP I W++     + T+       R  V+   
Sbjct: 2   PHII-QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 65  PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
              S L I+ V+   D   Y+C A + +G        L +
Sbjct: 61  GSSS-LHIKDVK-LSDSGRYDCEAASRIGGH-QKSMYLDI 97

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 84.9 bits (210), Expect = 4e-21
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 8/101 (7%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
           ++     P+      +     G    + C+A G P P ++W ++G+ ++ +Q+R  V   
Sbjct: 288 RIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLA-SQNRIEVS-- 344

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
              G  LR   +    D  +Y+CVAEN  G  V A A LTV
Sbjct: 345 ---GGELRFSKLVLE-DSGMYQCVAENKHGT-VYASAELTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 84.1 bits (208), Expect = 8e-21
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 7/98 (7%)

Query: 10  PPEITLRPRNQAVKAGGIT---SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG 66
            P    +P +     G      +  C AR +P    +W+ NG  +               
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRL---VA 60

Query: 67  GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           G L+   PV+ A+D   Y+CVA N  G  VS EASL  
Sbjct: 61  GDLVISNPVK-AKDAGSYQCVATNARGTVVSREASLRF 97

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 77.6 bits (191), Expect = 2e-18
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 10/97 (10%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P      P +     G + +  C A G+P+P I+WRK     +                L
Sbjct: 207 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSS--------EPL 258

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L I+ V    D+  YEC AEN  G   + +  + ++ 
Sbjct: 259 LHIQNVD-FEDEGTYECEAENIKG-RDTYQGRIIIHA 293

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 54.5 bits (131), Expect = 3e-10
 Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 13/109 (11%)

Query: 4   KVRFLDPPEITLRPR-NQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKR--VSGTQSRYM 59
            +RF    E +   R    +  G    F C      P    +W  N     +     R++
Sbjct: 94  SLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV 153

Query: 60  VQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA----VSAEASLTV 104
            Q     G+ L I     A D   Y C A + +        S  + L++
Sbjct: 154 SQ---TTGN-LYIAKTE-ASDLGNYSCFATSHIDFITKSVFSKFSQLSL 197

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 82.2 bits (203), Expect = 5e-21
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
              +   P    ++ G   +  C   GDP P + W KN K ++ T     ++      + 
Sbjct: 117 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQT-DHCNLKFEAGRTAY 175

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
             I  V    D   Y  V +N  G   +++ +++V+ 
Sbjct: 176 FTINGVS-TADSGKYGLVVKNKYGSE-TSDFTVSVFI 210

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 57.2 bits (138), Expect = 2e-11
 Identities = 13/86 (15%), Positives = 22/86 (25%), Gaps = 4/86 (4%)

Query: 26  GITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYE 85
           GI  +  +        + W  NG  +    S  +          L+I       D   Y 
Sbjct: 19  GIQLYSFVTYYVEDLKVNWSHNGSAIR--YSDRVKTGVTGEQIWLQINEPT-PNDKGKYV 75

Query: 86  CVAENGVGDAVSAEASLTVYEGEEKP 111
               +G          L+    +E  
Sbjct: 76  MELFDGKT-GHQKTVDLSGQAYDEAY 100

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 84.9 bits (210), Expect = 5e-21
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
           ++ F   P       +  V       + C A G P P  +W KNG  +  T+ R  ++  
Sbjct: 289 QLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLL-TRDRIQIE-- 345

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
                 L I  V    D  +Y+CVAEN  G    + A L+V
Sbjct: 346 ---QGTLNITIVN-LSDAGMYQCVAENKHGVI-FSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 81.4 bits (201), Expect = 8e-20
 Identities = 27/98 (27%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 10  PPEITLRPRNQAVKA---GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG 66
            P     P +               C  +G+P P I+W+ NG  V               
Sbjct: 5   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSV---VD 61

Query: 67  GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           GSLL I      +D   Y+C+A N  G  VS EA L  
Sbjct: 62  GSLL-INNPNKTQDAGTYQCIATNSFGTIVSREAKLQF 98

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 76.8 bits (189), Expect = 4e-18
 Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P      P     + G      C A G+P+P I WR+   +    ++R           +
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH-----KSNGI 259

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L I   +   D   YECVAEN  G    A+  LT Y 
Sbjct: 260 LEIPNFQ-QEDAGSYECVAENSRG-KNVAKGQLTFYA 294

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 61.4 bits (149), Expect = 1e-12
 Identities = 21/103 (20%), Positives = 30/103 (29%), Gaps = 7/103 (6%)

Query: 4   KVRFLDPPEITLRPR-NQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
           K++F        R R   +V+ G      C            W  N         R++ Q
Sbjct: 95  KLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQ 154

Query: 62  EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
                G+ L I  V    D   Y CV  N V +         +
Sbjct: 155 ---ETGN-LYIAKVE-KSDVGNYTCVVTNTVTNHKVLGPPTPL 192

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 83.8 bits (207), Expect = 8e-21
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
              +   P    ++ G   +  C   GDP P + W KN K ++       ++      + 
Sbjct: 222 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASD-DHCNLKFEAGRTAY 280

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
             I  V    D   Y  V +N  G   +++ +++V+ 
Sbjct: 281 FTINGVS-TADSGKYGLVVKNKYGSE-TSDFTVSVFI 315

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 71.1 bits (174), Expect = 3e-16
 Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 8/101 (7%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
            P        + V         C          I W K+ + +S    ++   +F  G  
Sbjct: 7   GPHFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYKDEREIS-VDEKH---DFKDGIC 61

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEE 109
            L I      +D  +YE + ++  G    +   L     +E
Sbjct: 62  TLLITEFS-KKDAGIYEVILKDDRGKD-KSRLKLVDEAFKE 100

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 59.5 bits (144), Expect = 5e-12
 Identities = 15/118 (12%), Positives = 29/118 (24%), Gaps = 14/118 (11%)

Query: 4   KVRFLDPPEITLRPRNQAVKAG----------GITSFYCIARGDPIPVIQWRKNGKRVSG 53
           K+      E+ +    +   +           GI  +  +        + W  NG  +  
Sbjct: 92  KLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIR- 150

Query: 54  TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
             S  +          L+I       D   Y     +G          L+    +E  
Sbjct: 151 -YSDRVKTGVTGEQIWLQINEPT-PNDKGKYVMELFDGKT-GHQKTVDLSGQAYDEAY 205

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 78.1 bits (193), Expect = 2e-20
 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 8   LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           ++ P+I  R ++Q V  G    F     G P P  +W KNG ++  +   Y         
Sbjct: 3   MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWP-EDNV 61

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
             L I  V    D A     A N  G+  S+ A L V
Sbjct: 62  CELVIRDVT-GEDSASIMVKAINIAGET-SSHAFLLV 96

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 81.0 bits (200), Expect = 2e-20
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 3/108 (2%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
           +   +  P++   P       G   +  C     P   I W ++G+ +  +    +    
Sbjct: 13  RGSHMYAPKLQG-PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN 71

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
            P  S L + P     D   Y C A N +G   S E  L   +    P
Sbjct: 72  TPSASYLEVTPDS-ENDFGNYNCTAVNRIGQE-SLEFILVQADTPSSP 117

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 83.1 bits (205), Expect = 3e-20
 Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 14/101 (13%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
            +    P    + P  Q V  G    F C   G+PI  + W K+GK +            
Sbjct: 301 VLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG----------- 349

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
               S+LRIE V+   D  +Y+C   N    A  A A L +
Sbjct: 350 -HSESVLRIESVKKE-DKGMYQCFVRNDRESA-EASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 79.2 bits (195), Expect = 6e-19
 Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P    L  +   +      S  C A+G P P  +W K  +  +  Q+  +          
Sbjct: 212 PRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT 271

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L I+      D   Y CV  N VG   S E  LTV  
Sbjct: 272 LIIKDAV-VEDSGKYLCVVNNSVGG-ESVETVLTVTA 306

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 73.4 bits (180), Expect = 6e-17
 Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 7/100 (7%)

Query: 10  PPEITLRPRNQ-AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
            P     P N+            C A G+P+P I W ++     G             G 
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQI--SSDGK 60

Query: 69  L----LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           L     R E  R      VY C+A N  G  +S +  +  
Sbjct: 61  LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA 100

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 56.9 bits (137), Expect = 5e-11
 Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 11/108 (10%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIAR---GDPIPVIQWRKNGKRV----SGTQS 56
            VR +           + V  G      C+      D + V+ W  + +      +    
Sbjct: 97  HVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDG 156

Query: 57  RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           +Y+V    P G L  I  V        Y+C  ++ +       A+   
Sbjct: 157 KYLVL---PSGEL-HIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 200

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 79.9 bits (197), Expect = 3e-20
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 11/102 (10%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQE 62
            V     P     P ++ V A    +  C A+G P PV + W ++   ++          
Sbjct: 100 YVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----- 154

Query: 63  FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
             P  SL     V      + + C A N  G   S  A++TV
Sbjct: 155 -GPQRSLH----VPGLNKTSSFSCEAHNAKGVTTSRTATITV 191

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 78.0 bits (192), Expect = 2e-19
 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 9/106 (8%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYM-------V 60
           +       P N     G   +  C        P + W ++G+ +    S           
Sbjct: 1   EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60

Query: 61  QEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           Q+     S LRI  ++ + D   Y+C+   G    VS    + +  
Sbjct: 61  QDDWIVVSQLRITSLQLS-DTGQYQCLVFLGHQTFVSQPGYVGLEG 105

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 83.1 bits (205), Expect = 3e-20
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 8   LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP--- 64
            DPP I    + + ++ G      C+A G+P P I W  +GK+++    RY V ++    
Sbjct: 427 FDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIA-NNDRYQVGQYVTVN 485

Query: 65  -PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
               S L I  V  A D  +Y+C+A++ VG A    A L VY 
Sbjct: 486 GDVVSYLNITSVH-ANDGGLYKCIAKSKVGVA-EHSAKLNVYG 526

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 81.5 bits (201), Expect = 1e-19
 Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
           K+     P I  +   +A+ AG      C   G PI  I W ++ + +     +  V   
Sbjct: 521 KLNVYGLPYIR-QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALP-INRKQKVFP- 577

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
              G+ L IE V    D A Y CVA+N  G +      + V  
Sbjct: 578 --NGT-LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV 617

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 80.8 bits (199), Expect = 2e-19
 Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 14/107 (13%)

Query: 5   VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
           +    P    + P  Q V  G    F C   G+PI  + W K+GK +             
Sbjct: 338 LTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG------------ 385

Query: 65  PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
              S+LRIE V+   D  +Y+C   N    A  A A L +    + P
Sbjct: 386 HSESVLRIESVK-KEDKGMYQCFVRNDRESA-EASAELKLGGRFDPP 430

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 78.4 bits (193), Expect = 1e-18
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 4/98 (4%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP--PG 66
            PP   L P ++A   G      C A G P P + W+K      G        +      
Sbjct: 713 VPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEE 772

Query: 67  GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           G+ L ++ ++   ++  Y C A NG+G  +SA   ++V
Sbjct: 773 GT-LHVDNIQK-TNEGYYLCEAINGIGSGLSAVIMISV 808

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 77.3 bits (190), Expect = 4e-18
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 10  PPEITLRPR-NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
           P  ++L     +        +  C A+G P+PV +W K  +  +  Q+  +         
Sbjct: 247 PKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSG 306

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
            L I+      D   Y CV  N VG   S E  LTV  
Sbjct: 307 TLIIKDAV-VEDSGKYLCVVNNSVGGE-SVETVLTVTA 342

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 70.3 bits (172), Expect = 1e-15
 Identities = 25/103 (24%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 10  PPEITLRPRN-QAVKAGGITSFYCIARGDPIPVIQW-RKNGKRVSGTQSRYMVQEFPPGG 67
            P     P N             C A G+P+P I W R +G  V        +      G
Sbjct: 38  GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS---SDG 94

Query: 68  SL----LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
            L     R E  R      VY C+A N  G  +S +  +    
Sbjct: 95  KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV 137

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 68.0 bits (166), Expect = 6e-15
 Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 4/98 (4%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGS 68
           P  I         + G   + +C   G  +P+ I W  +G+ +S              GS
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDL-GITTSRVGRRGS 677

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           +L IE V  A     + C A N  G        L VY 
Sbjct: 678 VLTIEAVE-ASHAGNFTCHARNLAG-HQQFTTPLNVYV 713

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 61.9 bits (150), Expect = 1e-12
 Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 11/108 (10%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIA---RGDPIPVIQWRKNGKRV----SGTQS 56
            VR +           + V  G      C+      D + V+ W  + +      +    
Sbjct: 132 HVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDG 191

Query: 57  RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           +Y+V    P G L  I  V        Y+C  ++ +       A+   
Sbjct: 192 KYLVL---PSGEL-HIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 235

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 77.4 bits (190), Expect = 4e-20
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVI--QWRKNGKRVSGTQSRYMVQEFPPGG- 67
           P+IT++P  Q+   G   SF C A       +   W  + + +   +          GG 
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 68  -----SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
                ++LR+  V     +  Y+CV  N  G + S  A LT+
Sbjct: 71  LMEYTTILRLRNVEFT-SEGXYQCVISNHFGSSYSVXAXLTI 111

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 76.6 bits (189), Expect = 7e-20
 Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 4/99 (4%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P ITLR R+  V  G  T F    +  P   ++W  NG  +  +   +       G   
Sbjct: 8   APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS--GVLT 65

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGE 108
           L I       D   Y  V  N  G+A S  A+L V  G+
Sbjct: 66  LEILDCH-TDDSGTYRAVCTNYKGEA-SDYATLDVTGGD 102

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 77.4 bits (190), Expect = 1e-19
 Identities = 23/106 (21%), Positives = 32/106 (30%), Gaps = 13/106 (12%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS-----------RY 58
                  P +Q    GG    +C A G P+P IQW   G+  +   S             
Sbjct: 21  MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHI 80

Query: 59  MVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
                    S + I+ +    D   YEC A N          +  V
Sbjct: 81  HATYHQHAASTISIDTLV-EEDTGTYECRASNDPD-RNHLTRAPRV 124

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 79.6 bits (196), Expect = 2e-19
 Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 3/104 (2%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK-RVSGTQSRYMVQE 62
                +PP+I L P       G      C A    +      K G  ++    +      
Sbjct: 180 NRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDN 239

Query: 63  FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           +      L +  V   +D  +Y CVA N VG   +A  +  V E
Sbjct: 240 YYKKVRALSLNAVD-FQDAGIYSCVASNDVGTR-TATMNFQVVE 281

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 66.5 bits (162), Expect = 1e-14
 Identities = 17/109 (15%), Positives = 28/109 (25%), Gaps = 7/109 (6%)

Query: 5   VRFLDPPEI-TLRPRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQE 62
           +   DP     L  +   V  G      C+         +   + G R    ++ Y    
Sbjct: 83  LYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFF-- 140

Query: 63  FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
                    I   +   D   Y C       ++ S    L V     +P
Sbjct: 141 --SPWRGFIIRKAK-VLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEP 186

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 55.7 bits (134), Expect = 9e-11
 Identities = 15/97 (15%), Positives = 24/97 (24%), Gaps = 13/97 (13%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P I        V+ G   +  C++ G     ++W                      GS 
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPE-------SPGST 52

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L        ++   Y C          S    L V +
Sbjct: 53  LTTRNAT-FKNTGTYRCTELEDPMAG-STTIHLYVKD 87

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 75.7 bits (186), Expect = 3e-19
 Identities = 27/100 (27%), Positives = 34/100 (34%), Gaps = 7/100 (7%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRV-SGTQSRYMVQEFPPGG 67
           PP I+   + Q    G      C  R  P P  I W      + SGT  RY V+      
Sbjct: 14  PPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72

Query: 68  ---SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
              S L I  +  A    +Y C A N  G   +    L  
Sbjct: 73  GVISTLTISNIVRADFQTIYNCTAWNSFGSD-TEIIRLKE 111

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 74.3 bits (183), Expect = 4e-19
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 6/96 (6%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P+I    R   +KAG   +      G P P   W       +      +V +     + 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALA-PELLV-DAKSSTTS 59

Query: 70  LRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTV 104
           +     +  R D+  Y+   +N +G+   A   + V
Sbjct: 60  IFFPSAK--RADSGNYKLKVKNELGED-EAIFEVIV 92

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 78.5 bits (193), Expect = 7e-19
 Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 5/110 (4%)

Query: 2   YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
                +  P    +  +  AV A     F C A G+P P I W KNG+   G      ++
Sbjct: 117 TGAPYWTRPER--MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIK 174

Query: 62  EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
                 S L +E V    D   Y CV EN  G ++    +L V E     
Sbjct: 175 LRHQQWS-LVMESVV-PSDRGNYTCVVENKFG-SIRQTYTLDVLERSPHR 221

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 76.6 bits (188), Expect = 4e-18
 Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 13/112 (11%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK----NGKRVSGTQSRYMVQEFPP 65
           P      P NQ    G    F+C    D  P IQW K    NG +V    + Y+      
Sbjct: 222 PILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTA 281

Query: 66  GG-------SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEK 110
           G         +L +  V    D   Y C+A N +G +    A L V   EE+
Sbjct: 282 GANTTDKELEVLSLHNVTFE-DAGEYTCLAGNSIGFS-HHSAWLVVLPAEEE 331

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 66.9 bits (163), Expect = 1e-14
 Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 8/96 (8%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
           P     +       +G      C    G P+    W K+G  +     R +V     G  
Sbjct: 8   PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLV-PSERVLV-----GPQ 61

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
            L++    H  D   Y C               +T 
Sbjct: 62  RLQVLNASHE-DSGAYSCRQRLTQRVLCHFSVRVTD 96

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 77.7 bits (191), Expect = 1e-18
 Identities = 21/98 (21%), Positives = 30/98 (30%), Gaps = 3/98 (3%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVI-QWRKNGKRVSGTQSRYMVQEFPPGGS 68
           PP +TL P       G      C A    +      + N  +++  Q             
Sbjct: 186 PPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVL 245

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
            L ++ V   +    Y CVA N  G   S      V E
Sbjct: 246 TLNLDQVD-FQHAGNYSCVASNVQG-KHSTSMFFRVVE 281

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 62.3 bits (151), Expect = 5e-13
 Identities = 17/109 (15%), Positives = 27/109 (24%), Gaps = 7/109 (6%)

Query: 5   VRFLDPPEITLR-PRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQE 62
           +   DP        +   V         C+         +   +   R     + Y    
Sbjct: 83  LYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSF-- 140

Query: 63  FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
            P  G    I   +       Y+C A  G    +S    L V +    P
Sbjct: 141 SPWHG--FTIHRAK-FIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGP 186

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 17/97 (17%), Positives = 25/97 (25%), Gaps = 13/97 (13%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P I        VK G   +  C+  G     ++W           S           S+
Sbjct: 4   IPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPHWTLYSD-------GSSSI 52

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L        ++   Y C          SA   L V +
Sbjct: 53  LSTNNAT-FQNTGTYRCTEPGDPLGG-SAAIHLYVKD 87

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 76.2 bits (187), Expect = 1e-18
 Identities = 27/111 (24%), Positives = 37/111 (33%), Gaps = 9/111 (8%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQE 62
            +  L PP         +V  G      C    G P     W K+G  +    ++     
Sbjct: 98  HLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAF 157

Query: 63  ------FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAV-SAEASLTVYE 106
                   P    L  +PV  A D   Y C A+NG G A+ S  A +   E
Sbjct: 158 MNSSFTIDPKSGDLIFDPVT-AFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 65.8 bits (160), Expect = 1e-14
 Identities = 15/103 (14%), Positives = 25/103 (24%), Gaps = 8/103 (7%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG---- 66
             +     +  V         C   G   P ++W+      +           P      
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 67  --GSLLRIEPVRHARDDAVYECVAENGVGDAVS-AEASLTVYE 106
              S +    V   +D+  Y C+     G         LTV  
Sbjct: 62  FSSSGITFSSVT-RKDNGEYTCMVSEEGGQNYGEVSIHLTVLV 103

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 75.8 bits (186), Expect = 2e-18
 Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 8/107 (7%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQE 62
           K+  L PP         +   G      C    G P     W K+G  +           
Sbjct: 101 KLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFS 160

Query: 63  -----FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
                  P    L  +P+  A D   Y C A NG G       ++ +
Sbjct: 161 NSSYVLNPTTGELVFDPLS-ASDTGEYSCEARNGYGTP-MTSNAVRM 205

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 65.8 bits (160), Expect = 9e-15
 Identities = 11/104 (10%), Positives = 25/104 (24%), Gaps = 8/104 (7%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG--- 66
              +        +         C   G   P ++W+ +    +                 
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 67  ---GSLLRIEPVRHARDDAVYECVAENGVGDAV-SAEASLTVYE 106
               + +  + V    D   Y C+     G++    +  L V  
Sbjct: 64  TFLPTGITFKSVTRE-DTGTYTCMVSEEGGNSYGEVKVKLIVLV 106

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 73.1 bits (179), Expect = 9e-18
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 8/106 (7%)

Query: 5   VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRV-----SGTQSRY 58
           ++   PP +     ++ +  G      C +   P      W K          +G++SR+
Sbjct: 78  IQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRF 137

Query: 59  MVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
            V     G S L IE +    D   Y C   +  G    A  +L V
Sbjct: 138 FVSS-SQGRSELHIENLNMEADPGQYRCNGTSSKGSD-QAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 48.5 bits (115), Expect = 3e-08
 Identities = 12/90 (13%), Positives = 18/90 (20%), Gaps = 16/90 (17%)

Query: 19  NQAVKAGGITSFYCIARGDPIPVIQ--WRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVR 76
                 G      C        V    W K G  +          E    G     +   
Sbjct: 7   TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLK---------EDALPGQKTEFKVDS 57

Query: 77  HARDDAVYECVAENGVGDAVSAEASLTVYE 106
                  Y CV            A++ ++ 
Sbjct: 58  DD-QWGEYSCVFLP----EPMGTANIQLHG 82

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 70.9 bits (174), Expect = 1e-17
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
                 +   +  V  G +    C  R D    I W ++G +++   +R  +      G 
Sbjct: 2   SSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLA-ESNRTRI-----TGE 54

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
            + ++    A D  +Y CV  +  G   +   S+ V +
Sbjct: 55  EVEVQDSVPA-DSGLYACVTSSPSGSD-TTYFSVNVSD 90

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 73.2 bits (179), Expect = 1e-17
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 8/104 (7%)

Query: 5   VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
                  +  L+  N  VK     +  C++  D    IQW  N + +  T  R       
Sbjct: 105 HVHQPVTQPFLQVTNTTVKELDSVTLTCLS-NDIGANIQWLFNSQSLQLT-ERM---TLS 159

Query: 65  PGGSLLRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYEG 107
              S+LRI+P++  R+DA  Y+C   N V    S    L +   
Sbjct: 160 QNNSILRIDPIK--REDAGEYQCEISNPVSVRRSNSIKLDIIFD 201

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 40.0 bits (93), Expect = 3e-05
 Identities = 17/115 (14%), Positives = 30/115 (26%), Gaps = 17/115 (14%)

Query: 12  EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKR---------VSGTQSRYMVQE 62
           E+T+      V                +    W K             V  +   +  Q 
Sbjct: 1   EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60

Query: 63  F------PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           +         GSLL  + +   +D  VY     +       A     V++   +P
Sbjct: 61  YSGREIIYSNGSLL-FQMIT-MKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQP 113

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 75.0 bits (184), Expect = 3e-17
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P        ++ V+     +F C         + W  NG+ +  +    +      G   
Sbjct: 467 PKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYL-WWVNGQSLPVSPRLQLS----NGNRT 521

Query: 70  LRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYEGEEKP 111
           L +  V   R+DA  Y C  +N V    S   +L V  G + P
Sbjct: 522 LTLFNVT--RNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTP 562

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 73.5 bits (180), Expect = 8e-17
 Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 15/102 (14%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P + T+ P     + G   S  C A  +P     W  +G     TQ              
Sbjct: 381 PDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE------------- 427

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           L I  +   ++  +Y C A N      S     T+    E P
Sbjct: 428 LFISNI-TEKNSGLYTCQANNSAS-GHSRTTVKTITVSAELP 467

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 73.1 bits (179), Expect = 1e-16
 Identities = 18/108 (16%), Positives = 28/108 (25%), Gaps = 6/108 (5%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
            V    P        +  V+     +  C         + W  N       + +      
Sbjct: 283 TVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQ-----L 337

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
                 L +  V    D   YEC  +N +    S    L V  G + P
Sbjct: 338 SNDNRTLTLLSVT-RNDVGPYECGIQNELSVDHSDPVILNVLYGPDDP 384

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 72.7 bits (178), Expect = 2e-16
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 8/103 (7%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P        ++ V+     +F C           W  N + +  +    +      G   
Sbjct: 111 PKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLS----NGNRT 165

Query: 70  LRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYEGEEKP 111
           L +  V   R+D   Y+C  +N V    S    L V  G + P
Sbjct: 166 LTLFNVT--RNDTASYKCETQNPVSARRSDSVILNVLYGPDAP 206

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 70.4 bits (172), Expect = 1e-15
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 15/95 (15%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P    + P + +  +G   +  C +  +P P   WR NG     TQ              
Sbjct: 559 PDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQV------------- 605

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           L I  +    ++  Y C   N      +     ++
Sbjct: 606 LFIAKIT-PNNNGTYACFVSNLATGR-NNSIVKSI 638

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 63.8 bits (155), Expect = 2e-13
 Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 15/103 (14%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P   T+ P N + ++G   +  C A  +P     W  NG     TQ              
Sbjct: 203 PDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE------------- 249

Query: 70  LRIEPVRHARDDAVYECVAENGVG-DAVSAEASLTVYEGEEKP 111
           L I  +    +   Y C A N       +   ++TVY    KP
Sbjct: 250 LFIPNIT-VNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKP 291

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 48.4 bits (115), Expect = 5e-08
 Identities = 19/118 (16%), Positives = 28/118 (23%), Gaps = 23/118 (19%)

Query: 12  EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ---------------- 55
           ++T+      V  G             +    W K  +     Q                
Sbjct: 1   KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60

Query: 56  --SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
              R ++    P  SLL I+ +    D   Y             A     VY    KP
Sbjct: 61  YSGREIIY---PNASLL-IQNIIQ-NDTGFYTLHVIKSDLVNEEATGQFRVYPELPKP 113

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 69.0 bits (169), Expect = 9e-17
 Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 7/97 (7%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
              I     +  V+ G   +F C         + W  +   +        +   P G  +
Sbjct: 13  RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLH-ANELNEIDAQPGGYHV 71

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L +  +   +D       A +       A A+L V E
Sbjct: 72  LTLRQLA-LKDSGTIYFEAGD-----QRASAALRVTE 102

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 71.3 bits (174), Expect = 1e-16
 Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 7/104 (6%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQE 62
            +  L  P  T    + + + G      C  + G      +W+K     +          
Sbjct: 115 LLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMT 174

Query: 63  FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                 ++ ++    +     Y C  +N VG        L V  
Sbjct: 175 ----SPVISVKNAS-SEYSGTYSCTVQNRVGSD-QCMLRLDVVP 212

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 15/121 (12%), Positives = 31/121 (25%), Gaps = 28/121 (23%)

Query: 12  EITLRPRNQAVKAGGITSFYCIARGDPIP----VIQWRKNGKRVSGTQSRYMVQ------ 61
            IT   +      G      C     P       I+W  +           ++       
Sbjct: 2   SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61

Query: 62  ----------------EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
                           +   G + + +  ++ + D   Y+C  +   G   + +  LTV 
Sbjct: 62  DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLS-DIGTYQCKVKKAPG-VANKKFLLTVL 119

Query: 106 E 106
            
Sbjct: 120 V 120

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 70.8 bits (173), Expect = 1e-16
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 1/87 (1%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQW-RKNGKRVSGTQSRYMVQEFPPGGS 68
           P  +++           + +  C     P P +QW    G   + T +   V +   G  
Sbjct: 104 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSL 163

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDA 95
            + ++            CV +N   +A
Sbjct: 164 SVAVDLSLPKPWHLPVTCVGKNDKEEA 190

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 39.6 bits (92), Expect = 4e-05
 Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 24/109 (22%)

Query: 2   YRKVRFLDPPEIT---LRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSR 57
           +R+V      E++   L P  + V  G +     I    P        ++          
Sbjct: 15  WRRVSLGPEIEVSWFKLGPGEEQVLIGRMH-HDVIFIEWPFRGFFDIHRSANTFF----- 68

Query: 58  YMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                       L +        D  Y C  + G    V+ +  L+V +
Sbjct: 69  ------------LVVTAAN-ISHDGNYLCRMKLGET-EVTKQEHLSVVK 103

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 72.0 bits (176), Expect = 1e-16
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK---RVSGTQSRYMVQEFPPG 66
              +++      V+ G   +  CI  G+ +   +W    K   R+    + +++      
Sbjct: 181 SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHI 240

Query: 67  GSLLRIEPVRHARDDAVYECVAENGVGDA-VSAEASLTVYE 106
            S+L I       D   Y C     V D       ++TV E
Sbjct: 241 RSILHIPSAELE-DSGTYTCNVTESVNDHQDEKAINITVVE 280

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 48.5 bits (115), Expect = 3e-08
 Identities = 11/94 (11%), Positives = 24/94 (25%), Gaps = 8/94 (8%)

Query: 12  EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
            +T       +         C         + W +  +      ++     F    S+L 
Sbjct: 2   VVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTF---SSVLT 54

Query: 72  IEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
           +  +    D   Y C   +  G        L ++
Sbjct: 55  LTNL-TGLDTGEYFCTHNDSRGLETDERKRLYIF 87

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 72.8 bits (178), Expect = 2e-16
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGT---QSRYM 59
           +  F   P +++   +  ++ G   +  C  +     V   W++   +        S + 
Sbjct: 205 RPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHH 264

Query: 60  VQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                   + L I   R   D  V+ C A N  G A +   +L V +
Sbjct: 265 GDFNYERQATLTISSAR-VNDSGVFMCYANNTFGSA-NVTTTLEVVD 309

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 64.3 bits (156), Expect = 1e-13
 Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 4/107 (3%)

Query: 5   VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
           V   DP ++ L  R+   K    T   C      +     +    +      R++     
Sbjct: 109 VFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPD--- 165

Query: 65  PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
              + + I+ V+ A       C  +      +S +  L V    +  
Sbjct: 166 -PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAV 211

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 63.9 bits (155), Expect = 2e-13
 Identities = 25/107 (23%), Positives = 32/107 (29%), Gaps = 18/107 (16%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK-------NGKRVSGTQSRYMVQE 62
            PEI    R             C+A G P P I W             V     + +   
Sbjct: 412 KPEILTYDRLVNG------MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSS 465

Query: 63  FPPGGSL---LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
            PP G L     I+     + +   EC A N VG   SA  +     
Sbjct: 466 GPPFGKLVVQSSIDSSA-FKHNGTVECKAYNDVG-KTSAYFNFAFKG 510

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 63.9 bits (155), Expect = 2e-13
 Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 9/110 (8%)

Query: 4   KVRFLDPPEITLRPR---NQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYM 59
            +  +D   I + P       V  G            P P   QW    +  +     Y 
Sbjct: 304 TLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYP 363

Query: 60  VQE---FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
             E        S L +  ++   +   Y  +  N   +A +   ++ V  
Sbjct: 364 KSENESNIRYVSELHLTRLK-GTEGGTYTFLVSNSDVNA-AIAFNVYVNT 411

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 48.9 bits (116), Expect = 3e-08
 Identities = 16/116 (13%), Positives = 31/116 (26%), Gaps = 26/116 (22%)

Query: 5   VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
                PP I     +  V+ G      C   G     ++W       +            
Sbjct: 31  PGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGF----VKWTFEILDETNE---------- 76

Query: 65  PGGSLLRIEPVRHARDDAVYECVAENGVGDAVS-----------AEASLTVYEGEE 109
              +    E    A +   Y C  ++G+ +++             + SL   E  +
Sbjct: 77  NKQNEWITEKAE-ATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDND 131

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 67.1 bits (164), Expect = 3e-16
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 10  PPEITLR-PRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           P  +T+   R+Q+V+ G   +F C A+   P   + W +       +++          G
Sbjct: 9   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD------FNG 62

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
            L  I  V+   D   Y C   N         A+L V
Sbjct: 63  IL-TIRNVQ-PSDAGTYVCTGSNMFA-MDQGTATLHV 96

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 71.3 bits (174), Expect = 4e-16
 Identities = 19/106 (17%), Positives = 28/106 (26%), Gaps = 5/106 (4%)

Query: 1   MYRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMV 60
            +        P + ++  N +V  G      C   G  +    W       S T  +   
Sbjct: 149 AHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGG 208

Query: 61  QEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
               P   L          +     C AEN VG A      + V  
Sbjct: 209 L---PSLGLTLANVTSDL-NRKNVTCWAENDVGRA-EVSVQVNVSF 249

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.4 bits (151), Expect = 6e-13
 Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 7/101 (6%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL- 69
                  +                 G P P ++W  NG  ++ T   +     P      
Sbjct: 247 VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 306

Query: 70  ----LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
               LR+    H  ++  Y  +A N  G   SA       +
Sbjct: 307 RHGCLRLNQPTHV-NNGNYTLLAANPFG-QASASIMAAFMD 345

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 66.4 bits (162), Expect = 6e-16
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
                 P  + +   +  V  G +    C  R D    I W ++G ++    +R  +   
Sbjct: 3   LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLV-ESNRTRI--- 57

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
              G  + +     A D  +Y CV  +  G   +   S+ V
Sbjct: 58  --TGEEVEVRDSIPA-DSGLYACVTSSPSGSD-TTYFSVNV 94

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 70.5 bits (172), Expect = 8e-16
 Identities = 14/105 (13%), Positives = 25/105 (23%), Gaps = 10/105 (9%)

Query: 4   KVRFLDPPEITLRPRNQ--AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
            V  ++   I     ++   +       F    +  P     W  + K     Q      
Sbjct: 318 LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK----- 372

Query: 62  EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                G  +      H      Y   AEN      +   +L +  
Sbjct: 373 -GLDNGYSISKFCN-HKHQPGEYIFHAENDDA-QFTKMFTLNIRS 414

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 68.5 bits (167), Expect = 4e-15
 Identities = 5/97 (5%), Positives = 20/97 (20%), Gaps = 5/97 (5%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
                       V      +   +          W      ++      +      G   
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNR---GVVS 104

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           + I  +        Y    ++   +  +   ++++  
Sbjct: 105 MVILKMTE-TQAGEYLLFIQSEATNY-TILFTVSIRN 139

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 63.2 bits (153), Expect = 3e-13
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV-SGTQSRYMVQE 62
            V   +    TLR      K     +  CI+   P P+++W     +  S  +       
Sbjct: 134 TVSIRNTLLYTLRRPYF-RKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESP---- 188

Query: 63  FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                 + + E V H        C A N +G   +   ++ + +
Sbjct: 189 ----AVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ 228

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 62.4 bits (151), Expect = 6e-13
 Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 14/104 (13%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG-- 66
                       +K G      C A   +    + W    K +    + + +  +     
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEG-NYFEMSTYSTNRT 285

Query: 67  ---GSLLRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYE 106
                   +  V   R+D   Y C +      +    A +T+ E
Sbjct: 286 MIRILFAFVSSVA--RNDTGYYTCSSSKHPSQS----ALVTIVE 323

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 65.9 bits (161), Expect = 9e-16
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 11/105 (10%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGT---QSRYMVQEFPPG 66
            P IT     ++  +          +G+P P +QW  NG  ++ +    ++  V      
Sbjct: 4   APTIT---FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60

Query: 67  GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
              L+++   H  ++  Y  +A+N  G     + S         P
Sbjct: 61  HGCLQLDNPTHM-NNGDYTLIAKNEYGKD-EKQISAHF---MGWP 100

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 69.3 bits (169), Expect = 3e-15
 Identities = 14/105 (13%), Positives = 24/105 (22%), Gaps = 10/105 (9%)

Query: 4   KVRFLDPPEITL--RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
            V  ++   I       +  +       F    +  P     W  + K     Q      
Sbjct: 318 LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL--- 374

Query: 62  EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                G  +      H      Y   AEN      +   +L +  
Sbjct: 375 ---DNGYSISKFCN-HKHQPGEYIFHAENDDAQF-TKMFTLNIRR 414

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 65.5 bits (159), Expect = 5e-14
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
           +    TLR      K     +  CI+   P P+++W     +    +             
Sbjct: 139 NTLLYTLRRPYF-RKMENQDALVCISESVPEPIVEWVLCDSQGESCKE-------ESPAV 190

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           + + E V H        C A N +G   +   ++ + +
Sbjct: 191 VKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ 228

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 65.5 bits (159), Expect = 5e-14
 Identities = 5/97 (5%), Positives = 20/97 (20%), Gaps = 5/97 (5%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
                       V      +   +          W      ++      +      G   
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNR---GVVS 104

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           + I  +        Y    ++   +  +   ++++  
Sbjct: 105 MVILKMTET-QAGEYLLFIQSEATNY-TILFTVSIRN 139

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 56.6 bits (136), Expect = 6e-11
 Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 12/107 (11%)

Query: 5   VRFLDPPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQ----SRYM 59
           +     P+ TL      +K G      C A   +    + W    K +        S Y 
Sbjct: 224 IDLNQTPQTTLPQL--FLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS 281

Query: 60  VQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                       +  V    D   Y C +           A +T+ E
Sbjct: 282 TNRTMIRILFAFVSSVA-RNDTGYYTCSSSKHPS----QSALVTIVE 323

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 56.2 bits (135), Expect = 9e-11
 Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 17/106 (16%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKR--------VSGTQSRYMV 60
             P++        +     +   C + G P+P   W+K   +          G  +R   
Sbjct: 414 RKPQV--------LAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKAN 465

Query: 61  QEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           ++            +  A    + +C A N +G        L    
Sbjct: 466 RKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLG-TSCETILLNSPG 510

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 64.7 bits (158), Expect = 4e-15
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 10/101 (9%)

Query: 10  PPEITLRPRNQ---AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG 66
           PP+I L    +     K G   +     +G P P + W K G  +    SR  V      
Sbjct: 21  PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT--SRVHV-RTSDF 77

Query: 67  GSLLRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYE 106
            ++  +      R D+  YE   +       +A   + V E
Sbjct: 78  DTVFFVRQAA--RSDSGEYELSVQIENMKD-TATIRIRVVE 115

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 67.1 bits (163), Expect = 8e-15
 Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 4/107 (3%)

Query: 5   VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
           V   DP ++ L       K        C      +      +   +   T   ++    P
Sbjct: 86  VFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVP--NP 143

Query: 65  PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
             G  + I+ V+ A       C A+       S + +L V E  +  
Sbjct: 144 KAG--ITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAI 188

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 65.9 bits (160), Expect = 2e-14
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 8/103 (7%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVS-----GTQSRYMVQEF 63
            P +++   +  +K G   +  C  +     V   W K   +          S +     
Sbjct: 188 IPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFN 247

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                 L I   R   D  V+ C A N  G + +   +L V E
Sbjct: 248 YERQETLTISSAR-VDDSGVFMCYANNTFG-SANVTTTLKVVE 288

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 38.9 bits (90), Expect = 8e-05
 Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 14/90 (15%)

Query: 8  LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
            PP I        V+AG   S  CI        ++W          +++          
Sbjct: 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFNEMVENK---------K 56

Query: 68 SLLRIEPVRHARDDAVYECVAENGVGDAVS 97
          +    E    A     Y C   NG+  ++ 
Sbjct: 57 NEWIQEKA-EATRTGTYTCSNSNGLTSSIY 85

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.4 bits (165), Expect = 9e-15
 Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK-NGKRVS-GTQSRYMVQEFPPGG 67
                 + +   V  G    F C A GDP P I W       VS  +  R  V    P G
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVF---PDG 441

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           + L +   +   D+  Y C+A N  G+  S  A L V
Sbjct: 442 T-LEVRYAQVQ-DNGTYLCIAANAGGND-SMPAHLHV 475

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 63.7 bits (155), Expect = 1e-14
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 7/99 (7%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMV--QEFPPGG 67
           PP +      +            + RG+P P + W  NG+ +  ++  ++   QE     
Sbjct: 8   PPRVVSLEEPELRL---EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
             L      H  ++  Y  +A+N +G A +   +    +
Sbjct: 65  GCLLFNKPTH-YNNGNYTLIAKNPLGTA-NQTINGHFLK 101

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 67.0 bits (163), Expect = 1e-14
 Identities = 18/106 (16%), Positives = 27/106 (25%), Gaps = 15/106 (14%)

Query: 10  PPEITLRPRNQAVKAG-------GITSFYCIARGDPIPVIQWRKNGKR--VSGTQSRYMV 60
                   + +    G           ++  A   P   + W KN     V G +   M 
Sbjct: 18  CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW 77

Query: 61  QEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
            +       L + P     D   Y C   N           L V+E
Sbjct: 78  AQ----DGALWLLPALQ-EDSGTYVCTTRNASY-CDKMSIELRVFE 117

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 64.3 bits (156), Expect = 1e-13
 Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 12/115 (10%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYC-----IARGDPIPVIQWRKNGKRVSGTQSRY 58
           +V       +      Q +         C       R      IQW K+   +     ++
Sbjct: 114 RVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKF 173

Query: 59  MVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA---VSAEASLTVYEGEEK 110
           +      G + L +  V    D   Y CV           ++    L + + +E+
Sbjct: 174 LSVR---GTTHLLVHDVALE-DAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEE 224

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 58.2 bits (140), Expect = 2e-11
 Identities = 19/111 (17%), Positives = 30/111 (27%), Gaps = 21/111 (18%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIAR---GDPIPVIQWRKNGKRV-----------SGTQ 55
            P I    +  +   G   +  C      G P+  + W                   G +
Sbjct: 226 IPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPR 285

Query: 56  SRYMVQEFPPGGSLLRIEPVRHARDDA--VYECVAENGVGDAVSAEASLTV 104
             Y           L  +PV   R+D    ++CV  N +          TV
Sbjct: 286 QEYSENNENYIEVPLIFDPVT--REDLHMDFKCVVHNTLS---FQTLRTTV 331

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 62.7 bits (153), Expect = 2e-14
 Identities = 26/102 (25%), Positives = 33/102 (32%), Gaps = 9/102 (8%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P  I     +Q V  G      C       PV  W K+ K +  +Q   +V E     ++
Sbjct: 8   PAAIIKPLEDQWVAPGEDVELRCELSRAGTPV-HWLKDRKAIRKSQKYDVVCE--GTMAM 64

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           L I       D   Y C  E          ASL V E    P
Sbjct: 65  LVIRGASLK-DAGEYTCEVEASKS-----TASLHVEEKASGP 100

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 66.3 bits (161), Expect = 2e-14
 Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 14/107 (13%)

Query: 10  PPEITLRPRNQ--AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP--- 64
            P I + P N+   V  G      C   G    +  W+ NG  +           +    
Sbjct: 208 RPVI-VSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVEN 266

Query: 65  -------PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
                     ++L I  +        + C A+N  G   +A   L  
Sbjct: 267 PANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGID-AAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 58.2 bits (140), Expect = 2e-11
 Identities = 20/105 (19%), Positives = 30/105 (28%), Gaps = 15/105 (14%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKR--VSGTQSRYMVQEFPPG 66
              I +   N+           C    +     I W K+  +  VS  Q+  + Q     
Sbjct: 11  EKIILVSSANEID------VRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH---- 60

Query: 67  GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
              L   P +   D   Y CV  N     +  + S    E E   
Sbjct: 61  KEKLWFVPAKV-EDSGHYYCVVRNSSYC-LRIKISAKFVENEPNL 103

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 53.2 bits (127), Expect = 1e-09
 Identities = 14/107 (13%), Positives = 26/107 (24%), Gaps = 15/107 (14%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYC------IARGDPIPVIQWRKNGKRVSGTQSRYMVQE 62
           +          Q +   G     C          + +P +QW K+ K +      +    
Sbjct: 102 NLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG-- 159

Query: 63  FPPGGSLLRIEPVRHARDDAVYECVAENGVGDA---VSAEASLTVYE 106
                  L +  V   +    Y C A          ++        E
Sbjct: 160 ---VKDRLIVMNVA-EKHRGNYTCHASYTYLGKQYPITRVIEFITLE 202

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 63.1 bits (153), Expect = 2e-14
 Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 12/113 (10%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGDPI---PVIQWRKNGKRVSGTQSRYMVQEFPP 65
                  +P+   VK G   +F    + + +   P I+W K       +++   +Q    
Sbjct: 6   SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65

Query: 66  GGSL-------LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
                      ++I   +       Y C          S    L V+E     
Sbjct: 66  FERHSRVYTFEMQIIKAK-DNFAGNYRCEVTYKDKF-DSCSFDLEVHESTGTT 116

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 4e-14
 Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 6/99 (6%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK-NGKRVSGTQSRYMVQEFPPGG 67
             P I   P +  V  G      C A    +  + W   NG  ++    +  +     G 
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG- 397

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
             L    V    D  +Y C+  N VG+  +A A+L V  
Sbjct: 398 -TLNFTNVTVQ-DTGMYTCMVSNSVGNT-TASATLNVTG 433

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 61.6 bits (149), Expect = 6e-14
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 13/109 (11%)

Query: 9   DPPEI-TLRPRNQAVKAGGITSFYCIARGDPI---PVIQWRKNGKR--VSGTQSRYMVQE 62
           DP  +  +RP++  V  GG  +F     G  +   PV++W K       S       + +
Sbjct: 2   DPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD 61

Query: 63  -----FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                       L I   +       Y C           +  +LTV+E
Sbjct: 62  SYDRASKVYLFELHITDAQ-PAFTGSYRCEVSTKDKFD-CSNFNLTVHE 108

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.2 bits (159), Expect = 6e-14
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK-NGKRVSGTQSRYMVQEFPPGG 67
             P I   PR+  +  G +    C     P+  ++W   NG  +S       +     G 
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
             L    V  + D  VY C+  N  G++ +A A L V
Sbjct: 409 --LNFSHVLLS-DTGVYTCMVTNVAGNS-NASAYLNV 441

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 64.7 bits (157), Expect = 7e-14
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 4/101 (3%)

Query: 8   LDPPEITLRPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQE-FPP 65
           L  P+ T   +   +    +    C++  G P   I W  +   +  T            
Sbjct: 115 LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVT 174

Query: 66  GGSLLRIEPVRHARDDAVYECVAENGVGDA-VSAEASLTVY 105
             SL  + P     D     C  E+   +       +LTVY
Sbjct: 175 VTSLWILVPSSQV-DGKNVTCKVEHESFEKPQLLTVNLTVY 214

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 59.7 bits (144), Expect = 4e-12
 Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 14/102 (13%)

Query: 5   VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEF 63
           V +     I+    N         +  C AR +P P    W      +            
Sbjct: 213 VYYPPEVSIS-GYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ----- 266

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
              G+ L I PV     +    C   N +G   + +A LTV 
Sbjct: 267 ---GAQLLIRPVD-KPINTTLICNVTNALG---ARQAELTVQ 301

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 52.0 bits (124), Expect = 2e-09
 Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 22/110 (20%)

Query: 17  PRNQAVKAGGITSFYCIARGDPIPV-----IQWRKNGKRVS------------GTQSRYM 59
           P       G   +  C  +   + V     + W ++G+  S                R  
Sbjct: 7   PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 66

Query: 60  VQEFPPGGSL----LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
                 G  L    LR+  +R   D+  Y C+       + S +  L V 
Sbjct: 67  FVAARLGAELRNASLRMFGLRVE-DEGNYTCLFVTFPQGSRSVDIWLRVL 115

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 60.8 bits (148), Expect = 1e-13
 Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 8/98 (8%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
             +I     +Q V  G      C    +     +W KNG  V  +    +VQ+       
Sbjct: 7   GLKILTPLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVVQKG--RIHK 62

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG 107
           L I       D+  Y    +      V+  A + V  G
Sbjct: 63  LVIANALTE-DEGDYVFAPDAY---NVTLPAKVHVISG 96

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 60.4 bits (147), Expect = 1e-13
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 13  ITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
           ++ +  +   + GG   + C          + W    +++  +  +Y +  +  G ++L 
Sbjct: 4   VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENS-EKYEI-TYEDGVAILY 61

Query: 72  IEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           ++ +    DD  Y C   N  G+  S+ A L V
Sbjct: 62  VKDIT-KLDDGTYRCKVVNDYGED-SSYAELFV 92

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 64.0 bits (155), Expect = 1e-13
 Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 11/100 (11%)

Query: 10  PPEITLRP-RNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGG 67
            PE+T+                 C A  +P      W      +                
Sbjct: 231 EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVE-------AQNR 283

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG 107
           +L    P+        Y C A N +G   S +  + + E 
Sbjct: 284 TLFFKGPIN-YSLAGTYICEATNPIGTR-SGQVEVNITEA 321

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 52.8 bits (126), Expect = 1e-09
 Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 8/108 (7%)

Query: 4   KVRFLDPPEITLRP-----RNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSR 57
            +  +  P   +       R +  +   +    C +  G P  V+ W    K  +  Q  
Sbjct: 124 NLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEI 183

Query: 58  YMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
                     S  R+ P R A       C+    +        +L V 
Sbjct: 184 RNPNGTVTVISRYRLVPSREA-HQQSLACIVNYHMDR-FKESLTLNVQ 229

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 49.4 bits (117), Expect = 2e-08
 Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 21/118 (17%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARG----DPIPVIQWRKNG---------------- 48
           DP ++     +     G     +C          I  + W+K+                 
Sbjct: 13  DPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGV 72

Query: 49  KRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
             ++  + R            +R+  +    D+ VY C           ++ +LTV  
Sbjct: 73  SVLAPYRERVEFLRPSFTDGTIRLSRLE-LEDEGVYICEFATFPTGNRESQLNLTVMA 129

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 63.5 bits (154), Expect = 2e-13
 Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 8/96 (8%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
            P       +  V         C          I W K+ + +S    ++  ++   G  
Sbjct: 222 GPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD-EKHDFKD---GIC 276

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
            L I       D  +YE + ++  G    +   L  
Sbjct: 277 TLLITEFSKK-DAGIYEVILKDDRGKD-KSRLKLVD 310

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 59.2 bits (143), Expect = 6e-12
 Identities = 12/103 (11%), Positives = 31/103 (30%), Gaps = 5/103 (4%)

Query: 10  PPEITLRPRNQAVKAGGITSFYC-IARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
           P           +   G   F+    +      + +  N K +       M  +   G  
Sbjct: 107 PTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII 166

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
            + +E ++   D+  Y    ++G     +  +++ +     K 
Sbjct: 167 EMFMEKLQ-DEDEGTYTFQLQDGKA---TNHSTVVLVGDVFKK 205

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 56.9 bits (137), Expect = 4e-11
 Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 4/89 (4%)

Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P       N         +F C     P     W K+      +  R  V+      + 
Sbjct: 3  DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDS-PRLEVESKG-NKTK 59

Query: 70 LRIEPVRHARDDAVYECVAENGVGDAVSA 98
          +  + +    D  +Y C   +  G A S 
Sbjct: 60 MTFKDLG-MDDLGIYSCDVTDTDGIASSY 87

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 60.1 bits (146), Expect = 2e-13
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 7/97 (7%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
             E+     +  VKA     F C    + +   +W KNG  V  ++   +          
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEVSDEKVTG-KWYKNGVEVRPSKRITISHV--GRFHK 64

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L I+ VR   D+  Y  V +     A+S  A L   E
Sbjct: 65  LVIDDVRPE-DEGDYTFVPDGY---ALSLSAKLNFLE 97

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 60.0 bits (146), Expect = 2e-13
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 8/102 (7%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
              +T +  +     G      C    +    ++W KNG+ +                 +
Sbjct: 7   GIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           L IE    A D A Y  +   G      + A L+V + +  P
Sbjct: 66  LIIEGATKA-DAAEYSVMTTGG-----QSSAKLSV-DLKSGP 100

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 63.7 bits (154), Expect = 2e-13
 Identities = 21/114 (18%), Positives = 29/114 (25%), Gaps = 12/114 (10%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYC-IARGDPIPVIQWRKNGKRVSGTQSRYMVQE 62
           +     PP                   YC I        I W KN + +    ++Y    
Sbjct: 122 RSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYS--- 178

Query: 63  FPPGGSLLRIEPVRHARDDAVYECVAENGVGDA-----VSAEASLTVYEGEEKP 111
               G  L I       D   Y+C              VS    LTV   ++  
Sbjct: 179 --QSGQNLIIHNPELE-DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHR 229

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 61.8 bits (149), Expect = 1e-12
 Identities = 15/103 (14%), Positives = 25/103 (24%), Gaps = 8/103 (7%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGDPIP----VIQWRKNGKRVSGTQSRYMVQEFP 64
           D     +      V  G   +  C A    +     +I W      + G           
Sbjct: 227 DHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTS 286

Query: 65  ---PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
                 + L  E V        Y C   N   D  +   ++ +
Sbjct: 287 SGGITEATLYFENVTEEYIGNTYTCRGHNYYFDK-TLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 56.0 bits (134), Expect = 9e-11
 Identities = 21/114 (18%), Positives = 30/114 (26%), Gaps = 16/114 (14%)

Query: 2   YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPI---------PVIQWRKNGKRVS 52
            +  ++L+P  +     N     G   S  C    D +          V+ W K GK   
Sbjct: 21  AKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRR 80

Query: 53  GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
               R         G L  I           Y C      GD V       + +
Sbjct: 81  PLNRRV------KNGDLW-IANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRK 127

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 60.1 bits (146), Expect = 2e-13
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 9/98 (9%)

Query: 10  PPEITLRPRNQAVKAGGITSFYC-IARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
              IT R +   V  G   SF C ++         W   GK V  + SR+          
Sbjct: 8   HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVG-SSSRFQA-TRQGRKY 65

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           +L +     + D               ++++ASL V E
Sbjct: 66  ILVVREAAPS-DAGEVVFSVRG-----LTSKASLIVRE 97

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 62.3 bits (151), Expect = 2e-13
 Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 8/96 (8%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
            P       +  V         C          I W K+ + +S  + ++  ++   G  
Sbjct: 117 GPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE-KHDFKD---GIC 171

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
            L I       D  +YE + ++  G    +   L  
Sbjct: 172 TLLITEFSKK-DAGIYEVILKDDRGKD-KSRLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 61.5 bits (149), Expect = 4e-13
 Identities = 12/99 (12%), Positives = 31/99 (31%), Gaps = 5/99 (5%)

Query: 14  TLRPRNQAVKAGGITSFY-CIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRI 72
           T       +   G   F+    +      + +  N K +       M  +   G   + +
Sbjct: 6   TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFM 65

Query: 73  EPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           E ++   D+  Y    ++G     +  +++ +     K 
Sbjct: 66  EKLQ-DEDEGTYTFQLQDGKA---TNHSTVVLVGDVFKK 100

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 60.3 bits (146), Expect = 2e-13
 Identities = 18/102 (17%), Positives = 29/102 (28%), Gaps = 10/102 (9%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYM-----VQEFP 64
            P      +                 G P P ++W  NG  ++ T   +           
Sbjct: 3   MPASV---QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 59

Query: 65  PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                LR+    H  ++  Y  +A N  G A SA       +
Sbjct: 60  VRHGCLRLNQPTH-VNNGNYTLLAANPFGQA-SASIMAAFMD 99

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 59.6 bits (145), Expect = 3e-13
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 9/102 (8%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P       ++  V  GG  +  C+      PV +W      +       + QE       
Sbjct: 8   PVRFQEALKDLEVLEGGAATLRCVLSSVAAPV-KWCYGNNVLRPGDKYSLRQEG--AMLE 64

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           L +  +R  +D   Y C   +      +  A+LTV      P
Sbjct: 65  LVVRNLR-PQDSGRYSCSFGD-----QTTSATLTVTALPSGP 100

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 59.3 bits (144), Expect = 4e-13
 Identities = 22/101 (21%), Positives = 30/101 (29%), Gaps = 9/101 (8%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P  I     +Q V  G           +    + W KNG  ++   S      F   G  
Sbjct: 8   PVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKR 66

Query: 70  --LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGE 108
             L    V    D   Y+ +   G       EA L V E +
Sbjct: 67  HILIFSDVVQE-DRGRYQVITNGG-----QCEAELIVEEKQ 101

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 57.7 bits (140), Expect = 1e-12
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
               + +PR+  V AG    F        + V +W++ G  +S +    +  E       
Sbjct: 8   VSAFSKKPRSVEVAAGSPAVFEAETERAGVKV-RWQRGGSDISASNKYGLATE--GTRHT 64

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L +  V  A D   Y  +A +        +  L V E
Sbjct: 65  LTVREVGPA-DQGSYAVIAGS-----SKVKFDLKVIE 95

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 60.8 bits (147), Expect = 1e-12
 Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 21/100 (21%)

Query: 8   LDPPEITLR--PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP 65
           L  P +  R  P N         +  C A G+P+P ++  K+G           V     
Sbjct: 181 LYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVT---- 236

Query: 66  GGSLLRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTV 104
                        RD    Y C A +  G+ V+ E ++ V
Sbjct: 237 -------------RDLEGTYLCRARSTQGE-VTREVTVNV 262

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 17/109 (15%), Positives = 26/109 (23%), Gaps = 18/109 (16%)

Query: 2   YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
            + V     P   +      V  G   +  C A     P  +   NG             
Sbjct: 90  LQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH----PRAKVTLNGVPAQ--------- 136

Query: 62  EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAV---SAEASLTVYEG 107
             P G     +       +   + C A   V   +   +    L V  G
Sbjct: 137 --PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG 183

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 10/100 (10%), Positives = 28/100 (28%), Gaps = 11/100 (11%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGD---PIPVIQWRKNGKRVSGTQSRYMVQEFPP 65
            PP++      + ++     +  C   G        +      +R++ T +     +   
Sbjct: 5   TPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY--GNDSFS 59

Query: 66  GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
             + + +             C    G         ++T+Y
Sbjct: 60  AKASVSVTAEDE--GTQRLTCAVILGNQS-QETLQTVTIY 96

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 61.0 bits (147), Expect = 2e-12
 Identities = 12/103 (11%), Positives = 28/103 (27%), Gaps = 17/103 (16%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGD-PIPV---IQWRKNGKRVSGTQSRYMVQEFPP 65
              ++++   +   AG   +      GD P+P      W K+ +      +         
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT-------- 53

Query: 66  GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGE 108
               L +       +   Y+   ++             + E E
Sbjct: 54  ----LTVADATSE-NAGSYKVTVQDTDTMTSVESEVFLMEEAE 91

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 53.3 bits (127), Expect = 9e-10
 Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 23/108 (21%)

Query: 5   VRFLDPPEITLRPRNQAVKAGGITSFYC---IARGDPIPVI-----QWRKNGKRVSGTQS 56
           +   +       P++  V +      +     + G            W K    +  TQ 
Sbjct: 87  MEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQD 146

Query: 57  RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
                        + I+    A  + VY         D+ +A AS  +
Sbjct: 147 -------------ITIQEFT-ADKNGVYTVKVWGESEDS-AASASTKI 179

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 57.8 bits (140), Expect = 2e-12
 Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 10/102 (9%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P + T   RN+    G      C         ++W K  + +     R+ +         
Sbjct: 19  PIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDG-DRHSL-RQDGARCE 74

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           L+I  +    D   Y C+            A LTV      P
Sbjct: 75  LQIRGLVAE-DAGEYLCMCGK-----ERTSAMLTVRAMPSGP 110

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 59.5 bits (143), Expect = 4e-12
 Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 23/117 (19%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK----------RVSGTQSRYM 59
                       V  G   +  C         + W               +    ++++ 
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFG 195

Query: 60  VQEFPP---------GGSLLRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYE 106
           +  F           G   L I   +    DA    C    G G+ + A+ S T+ +
Sbjct: 196 ITWFSSEIAGRASFSGARNLVIRAAK--ITDAGRVWCELATGQGE-LDADRSSTILK 249

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 20/122 (16%), Positives = 27/122 (22%), Gaps = 31/122 (25%)

Query: 13  ITLRPRNQAVKAGGITSFYC---IARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           +        V AGG     C   +A     PVI W K       T+       +   G  
Sbjct: 5   VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64

Query: 70  ---------------------------LRIEPVRHARDDAVYECVAENGVGDAVSAEASL 102
                                      LR+  V    D   Y C              + 
Sbjct: 65  FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQ-DGGRYWCQVAQWSIRTEFGLDAK 123

Query: 103 TV 104
           +V
Sbjct: 124 SV 125

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 57.0 bits (138), Expect = 4e-12
 Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 9/98 (9%)

Query: 10  PPEITLR-PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
                 +      V  G           D    ++W KNG+ +  + S+Y+ +       
Sbjct: 15  STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFES-IGAKR 72

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
            L I       DDA Y+CV              L V E
Sbjct: 73  TLTISQCS-LADDAAYQCVVGG-----EKCSTELFVKE 104

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 56.6 bits (137), Expect = 5e-12
 Identities = 24/103 (23%), Positives = 31/103 (30%), Gaps = 11/103 (10%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
               T    N  V+  G   F C     P   + WRK    +  +      QE   G +L
Sbjct: 8   ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQE---GLTL 63

Query: 70  -LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
            L I  +  A D   Y C           + A L V      P
Sbjct: 64  RLTISALEKA-DSDTYTCDIGQ-----AQSRAQLLVQGRRSGP 100

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 58.6 bits (141), Expect = 6e-12
 Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 8/101 (7%)

Query: 12  EITLRPRNQA-VKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
           +I   P ++   + G   S  C   G   P   WR         +            S L
Sbjct: 2   KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK-----VTNEGTTSTL 56

Query: 71  RIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
            + PV    ++  Y C A             + +Y   + P
Sbjct: 57  TMNPVS-FGNEHSYLCTATCESRKL-EKGIQVEIYSFPKDP 95

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 45.5 bits (107), Expect = 3e-07
 Identities = 16/113 (14%), Positives = 29/113 (25%), Gaps = 12/113 (10%)

Query: 4   KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGD---PIPVIQWRKNGKRVSGTQS--RY 58
           +V     P+      +  ++AG   +  C            I   K    +   +     
Sbjct: 85  QVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDA 144

Query: 59  MVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA------VSAEASLTVY 105
             +        +   PV       V  C A+  + +         A   L VY
Sbjct: 145 DRKSLETKSLEVTFTPVIE-DIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVY 196

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 56.2 bits (136), Expect = 6e-12
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 10/97 (10%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P   T   + +    G   +  C      +  ++W+K  + +          +       
Sbjct: 8   PARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETL--RDGGRYSLKQDGTRCE 63

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L+I  +  A D   Y C+            A+LTV  
Sbjct: 64  LQIHDLSVA-DAGEYSCMCGQ-----ERTSATLTVRA 94

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 59.5 bits (143), Expect = 6e-12
 Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 19/105 (18%)

Query: 4   KVRFLDPPEITLR--PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
           ++R L  P +  R  P N         +  C A G+P+P ++  K+G           V 
Sbjct: 362 ELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVT 421

Query: 62  EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                              +  Y C A +  G  V+ E ++ V  
Sbjct: 422 R----------------DLEGTYLCRARSTQG-EVTREVTVNVLS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 11/94 (11%)

Query: 12  EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
           + ++ P    +  GG     C    D   ++       +               G +   
Sbjct: 1   QTSVSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLP---------GNNRKV 51

Query: 72  IEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
            E     ++D+   C +        +A+  LTVY
Sbjct: 52  YELSN-VQEDSQPMCYSNCP-DGQSTAKTFLTVY 83

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 42.9 bits (100), Expect = 4e-06
 Identities = 13/104 (12%), Positives = 23/104 (22%), Gaps = 20/104 (19%)

Query: 5   VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
           V     P   +      V  G   +  C A       +                      
Sbjct: 278 VTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP--------------L 323

Query: 65  PGGSLLRIEPVRHARDDA-VYECVAENGVGDAV---SAEASLTV 104
              + L ++      D+   + C A   V   +   +    L V
Sbjct: 324 GPRAQLLLKATP--EDNGRSFSCSATLEVAGQLIHKNQTRELRV 365

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 42.9 bits (100), Expect = 4e-06
 Identities = 12/87 (13%), Positives = 21/87 (24%), Gaps = 9/87 (10%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARG---DPIPVIQWRKNGKRVSGTQSRYMVQEFPPG 66
           P  + L P       G   +  C   G        +   +  K +    +        P 
Sbjct: 86  PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG-----EPA 140

Query: 67  GSLLRIEPVRHARDDAVYECVAENGVG 93
                +   R     A + C  E  + 
Sbjct: 141 EVTTTVLVRR-DHHGANFSCRTELDLR 166

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 56.9 bits (137), Expect = 1e-11
 Identities = 12/94 (12%), Positives = 25/94 (26%), Gaps = 15/94 (15%)

Query: 12  EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
            +T    +  +  G   +    +     P +Q R    +               GG  L 
Sbjct: 100 GLTANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI------------QGGKTLS 146

Query: 72  IEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
           +  +   +D   + C         V  +  + V 
Sbjct: 147 VSQLE-LQDSGTWTCTVLQNQK-KVEFKIDIVVL 178

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 44.2 bits (104), Expect = 1e-06
 Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 22/108 (20%)

Query: 22  VKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ---------------EFPPG 66
            K G      C A         W+ + +          +                 +  G
Sbjct: 7   GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66

Query: 67  GSLLRIEPVRHARDDAVYECVAENGVGDA------VSAEASLTVYEGE 108
              L I+ ++   D   Y C  E+   +       ++A +   + +G+
Sbjct: 67  NFPLIIKNLKIE-DSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQ 113

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 57.6 bits (138), Expect = 1e-11
 Identities = 14/98 (14%), Positives = 24/98 (24%), Gaps = 6/98 (6%)

Query: 9   DPPEITLRPRNQAVKAGGIT-SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           +     +      V   G T    C     P   I W+ N K + G +    +       
Sbjct: 111 NEEMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGS---DE 165

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
             L ++          Y C       +  +    L   
Sbjct: 166 DHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 203

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 36.0 bits (82), Expect = 8e-04
 Identities = 8/72 (11%), Positives = 17/72 (23%), Gaps = 12/72 (16%)

Query: 36  GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA-VYECVAENGVGD 94
                 I W K+GK +                    +      +D   +Y+C        
Sbjct: 26  DAEAKNITWFKDGKMIGFLTED---------KKKWNLGSNA--KDPRGMYQCKGSQNKSK 74

Query: 95  AVSAEASLTVYE 106
            +     +   +
Sbjct: 75  PLQVYYRMGSAD 86

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 54.6 bits (132), Expect = 2e-11
 Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 9/97 (9%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
             E+        V  G    F      +P    QW+  G+ ++       +        +
Sbjct: 5   LIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLA-ASPDCEI-IEDGKKHI 61

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L +   +           A N       + A+L V E
Sbjct: 62  LILHNCQLG-MTGEVSFQAAN-----TKSAANLKVKE 92

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.5 bits (139), Expect = 3e-11
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 5/91 (5%)

Query: 16  RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPV 75
           +        G   +  C  +   +  +    + ++V    S   V      G  L  + V
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSV--RNGD-LFFKKV 308

Query: 76  RHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           +   D  VY C A     +  +    L VY 
Sbjct: 309 QVE-DGGVYTCYAMGETFNE-TLSVELKVYN 337

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 55.1 bits (132), Expect = 3e-11
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 10/98 (10%)

Query: 17  PRNQAVKAGGITSFYCIARGDPIPVIQWR--------KNGKRVSGTQSRYMVQEFPPGGS 68
                +  G      C AR +    I +         ++ K V+         E     S
Sbjct: 15  SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
            L I+ V  + D  +Y C A +G+         + V+E
Sbjct: 75  TLTIDGVTRS-DQGLYTCAASSGLM-TKKNSTFVRVHE 110

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 57.2 bits (137), Expect = 4e-11
 Identities = 17/111 (15%), Positives = 30/111 (27%), Gaps = 16/111 (14%)

Query: 9   DPPEITLRPRNQ---AVKAGGITSFYCIAR----GDPIPVIQWRKNGKRVSGTQSRYMVQ 61
             P +   P +      + G      C        D    + W  +GK+         + 
Sbjct: 222 AVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTIN 281

Query: 62  EFPP--------GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           E              +L I+ V        Y C A +  G+  +  A +  
Sbjct: 282 ESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEV-AKAAKVKQ 331

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 53.7 bits (128), Expect = 6e-10
 Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 15/106 (14%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCI-----ARGDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
                   P ++     GI    C            P I W     ++    +       
Sbjct: 119 CFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI----- 173

Query: 64  PPGGSLLRIEPVRHARDDAVYECVA---ENGVGDAVSAEASLTVYE 106
            P G  L       + ++  Y CV    ENG    ++   ++ V  
Sbjct: 174 -PEGMNLSFLIALIS-NNGNYTCVVTYPENGRTFHLTRTLTVKVVG 217

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 10/85 (11%), Positives = 17/85 (20%), Gaps = 5/85 (5%)

Query: 25  GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP---PGGSLLRIEPVRHARDD 81
                F           + W    +     +                +L   P     D 
Sbjct: 33  EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTL-LNDT 91

Query: 82  AVYECVAENGVGDAVSAEASLTVYE 106
             Y C+  N    +      L V +
Sbjct: 92  GNYTCMLRNTTYCS-KVAFPLEVVQ 115

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 55.3 bits (133), Expect = 5e-11
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 12/99 (12%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
              + L+   + V  G      C       +  + + K+G+ +           +     
Sbjct: 85  SDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK----------YWYENH 134

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG 107
            + I       D   Y C  +    D  S   ++TV + 
Sbjct: 135 NISITNATVE-DSGTYYCTGKVWQLDYESEPLNITVIKA 172

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 44.5 bits (105), Expect = 7e-07
 Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 17/96 (17%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P+++L P    +  G   +  C           +W  NG     T S             
Sbjct: 5   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS------------ 52

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
           L I   +   D   Y+C  +       S    L V+
Sbjct: 53  LNIVNAKF-EDSGEYKCQHQQVNE---SEPVYLEVF 84

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 56.3 bits (135), Expect = 7e-11
 Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 15/100 (15%)

Query: 12  EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
            +T    +  +  G   +    +     P +Q R    +               GG  L 
Sbjct: 99  GLTANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI------------QGGKTLS 145

Query: 72  IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           +  +   +D   + C         V  +  + V   ++  
Sbjct: 146 VSQLE-LQDSGTWTCTVLQNQK-KVEFKIDIVVLAFQKAS 183

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 44.4 bits (104), Expect = 1e-06
 Identities = 15/108 (13%), Positives = 31/108 (28%), Gaps = 22/108 (20%)

Query: 22  VKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP---------------G 66
            K G      C A         W+ + +          + + P                G
Sbjct: 6   GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 65

Query: 67  GSLLRIEPVRHARDDAVYECVAENGVGDA------VSAEASLTVYEGE 108
              L I+ ++   D   Y C  E+   +       ++A +   + +G+
Sbjct: 66  NFPLIIKNLKIE-DSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQ 112

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
             P   ++P    V  G   +FYC       PV+ W K+ + +   QS   ++ +     
Sbjct: 481 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELK--QSVKYMKRYNGNDY 538

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
            L I  V+   D   Y   A+N  G        L V
Sbjct: 539 GLTINRVKGD-DKGEYTVRAKNSYGTK-EEIVFLNV 572

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 53.5 bits (128), Expect = 1e-10
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 10/103 (9%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK-------RVSGTQSRYMVQEF 63
             +T       V+ G   +  C+        +QW                  S+Y +   
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                 + +  V   +D+ VY+C+  +      + E  + V  
Sbjct: 62  SANQLSITVPNVT-LQDEGVYKCLHYS--DSVSTKEVKVIVLA 101

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 54.5 bits (131), Expect = 2e-10
 Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 13/103 (12%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
              + L+  ++    G   +  C A  D  +  + + +NGK                  S
Sbjct: 82  RGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHW----------NS 131

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
            L I     +  +  Y C          SA  S+TV E    P
Sbjct: 132 NLTILKTNIS-HNGTYHCSGMGKHRYT-SAGISVTVKELFPAP 172

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 48.0 bits (114), Expect = 5e-08
 Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 17/100 (17%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVI-----QWRKNGKRVSGTQSRYMVQEFP 64
            P +     +  +  G + +  C  +             +    K + G  +        
Sbjct: 171 APVLNASVTSP-LLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNT-------- 221

Query: 65  PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
              S  +I   R   D  +Y C A    G+ +     L +
Sbjct: 222 --SSEYQILTARRE-DSGLYWCEAATEDGNVLKRSPELEL 258

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 45.3 bits (107), Expect = 5e-07
 Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 19/99 (19%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
             ITL+P   +V      + +C     P     QW  NG     +               
Sbjct: 2   AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS------------ 49

Query: 70  LRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYEG 107
            RI       +D+  Y C          S    L ++ G
Sbjct: 50  YRITSAS--VNDSGEYRCQRGLS---GRSDPIQLEIHRG 83

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 52.5 bits (125), Expect = 1e-09
 Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 11/106 (10%)

Query: 10  PPEITLRP-RNQAVKAGGITSFYCIARGDPIPVIQWR--------KNGKRVSGTQSRYMV 60
             ++ L P     +  G      C AR +    I +         ++ K V+        
Sbjct: 104 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 163

Query: 61  QEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
            E     S L I+ V    D  +Y C A +G+         + V+E
Sbjct: 164 SEMKKFLSTLTIDGVT-RSDQGLYTCAASSGLMT-KKNSTFVRVHE 207

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 50.1 bits (120), Expect = 1e-09
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 9/95 (9%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
             +     R    +AG   +  C         + W K+GK++S +    +          
Sbjct: 11  FAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAV--GCTRR 67

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           L ++    A +   Y C A             L V
Sbjct: 68  LVVQQAGQA-EAGEYSCEAGG-----QQLSFRLQV 96

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 51.5 bits (123), Expect = 3e-09
 Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 9/106 (8%)

Query: 5   VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP 64
           V+   P     +               C A G P   + W  +  +V   ++     +  
Sbjct: 111 VKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKRE 170

Query: 65  PG----GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                  S LRI        + ++ C       +  +  A L + E
Sbjct: 171 EKLFNVTSTLRINT----TTNEIFYCTFRRLDPE-ENHTAELVIPE 211

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 51.7 bits (123), Expect = 4e-09
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 2/93 (2%)

Query: 15  LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG-SLLRIE 73
           LR +N  V AG   +F C A G  +   +    G  V     + +         +   + 
Sbjct: 169 LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVV 228

Query: 74  PVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                RD   Y C+     G  +S  A L V E
Sbjct: 229 NTTK-RDAGKYRCMIRTEGGVGISNYAELVVKE 260

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 50.2 bits (120), Expect = 5e-09
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 12/93 (12%)

Query: 13  ITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
           + L+  +   + G      C +  D P+  + + +NGK             F        
Sbjct: 88  LVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK----------FSHLDPTFS 137

Query: 72  IEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           I    H+     Y C    G     S   ++TV
Sbjct: 138 IPQANHS-HSGDYHCTGNIGYTLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 46.0 bits (109), Expect = 2e-07
 Identities = 17/96 (17%), Positives = 22/96 (22%), Gaps = 17/96 (17%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
             + L P    V      +  C     P    IQW  NG  +                  
Sbjct: 5   AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP------------ 52

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
                     D   Y C        ++S    LTV 
Sbjct: 53  SYRFKAN-NNDSGEYTCQTGQT---SLSDPVHLTVL 84

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 50.3 bits (120), Expect = 5e-09
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 17/92 (18%)

Query: 32  CIARGDPIPVIQWRK-----------NGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD 80
                D I  I+W K             K     +  Y +      G+ L+I+ ++   D
Sbjct: 23  SFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKL---FKNGT-LKIKHLK-TDD 77

Query: 81  DAVYECVAENGVG-DAVSAEASLTVYEGEEKP 111
             +Y+    +  G + +     L + E   KP
Sbjct: 78  QDIYKVSIYDTKGKNVLEKIFDLKIQERVSKP 109

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 45.6 bits (108), Expect = 3e-07
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 15/82 (18%)

Query: 25  GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVY 84
              T+  C       P +   ++GK +  +Q              +           A +
Sbjct: 115 CINTTLTCEVMNGTDPELNLYQDGKHLKLSQR-------------VITHKWT-TSLSAKF 160

Query: 85  ECVAENGVGDAVSAEASLTVYE 106
           +C A N V    S+   ++  E
Sbjct: 161 KCTAGNKVSKE-SSVEPVSCPE 181

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 48.2 bits (115), Expect = 8e-09
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 11/99 (11%)

Query: 10  PPEIT--LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           P  I       +            C       P   W K+G++V  ++   +  +     
Sbjct: 8   PVHILSPQDKVSLTFTTSERVVLTCELSRVDFPA-TWYKDGQKVEESELLVVKMD--GRK 64

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
             L +   +   D   +EC  E      VSA   +TV +
Sbjct: 65  HRLILPEAKVQ-DSGEFECRTEG-----VSAFFGVTVQD 97

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 47.8 bits (114), Expect = 1e-08
 Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 10/98 (10%)

Query: 10  PPEITLR-PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
                        V  GG   F      DP   ++W KNG+ +  +       +      
Sbjct: 7   GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHK--GCQR 63

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           +L I   +   DD+ Y   A +           L V  
Sbjct: 64  ILFINNCQMT-DDSEYYVTAGD-----EKCSTELFVRS 95

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 49.1 bits (117), Expect = 1e-08
 Identities = 15/104 (14%), Positives = 27/104 (25%), Gaps = 13/104 (12%)

Query: 5   VRFLDPPEITLRPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEF 63
           +       +   PR    K        C +     +  + + +NGK              
Sbjct: 84  LEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH------- 135

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG 107
               S   I       D   Y C    G  +  S   ++T+ + 
Sbjct: 136 ---NSDFHIPKATLK-DSGSYFCRGLVGSKNVSSETVNITITQA 175

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 42.6 bits (100), Expect = 4e-06
 Identities = 18/99 (18%), Positives = 25/99 (25%), Gaps = 17/99 (17%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGS 68
              + L P+  +V      +  C     P     QW  N   +S   S            
Sbjct: 7   KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS----------- 55

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG 107
              I+      D   Y C          S    L V+ G
Sbjct: 56  -YFIDAAT-VNDSGEYRCQTNLSTL---SDPVQLEVHIG 89

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 47.4 bits (113), Expect = 2e-08
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 12/101 (11%)

Query: 9   DPPEITLRPR---NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP 65
           D     + P      A          C     P   ++W K+G+ V   +S  ++ +   
Sbjct: 9   DVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEV--VESPALLLQKED 65

Query: 66  GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
               L +  V+   D   Y C  ++      SA  ++TV E
Sbjct: 66  TVRRLVLPAVQLE-DSGEYLCEIDD-----ESASFTVTVTE 100

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 47.6 bits (113), Expect = 2e-08
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 12/96 (12%)

Query: 17  PRNQAVKAGGITSFYCIARGDPIPVIQWRKN-------GKRVSGTQSRYMVQEFPPGGSL 69
            +N  V  GG     C    +    +QW            + +   +R  +         
Sbjct: 13  TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELS 72

Query: 70  LRIEPVRHARDDAVYEC-VAENGVGDAVSAEASLTV 104
           + +  V    D+  Y C +    V    +++A LTV
Sbjct: 73  ISVSDVSL-SDEGQYTCSLFTMPV---KTSKAYLTV 104

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 48.7 bits (115), Expect = 4e-08
 Identities = 13/88 (14%), Positives = 20/88 (22%), Gaps = 7/88 (7%)

Query: 10 PPEITLRPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
           P   +         G   +  C     +    + W           SR+        G 
Sbjct: 6  CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM-----GR 60

Query: 69 LLRIEPVRHARDDAVYECVAENGVGDAV 96
           L +  V+   D   Y C         V
Sbjct: 61 RLLLRSVQL-HDSGNYSCYRAGRPAGTV 87

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 48.1 bits (113), Expect = 7e-08
 Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 2/76 (2%)

Query: 21  AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL-LRIEPVRHAR 79
             +   +  F C         +     GKR    + R ++      GS  + I  +R   
Sbjct: 242 GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLR-KE 300

Query: 80  DDAVYECVAENGVGDA 95
           D   Y C A +     
Sbjct: 301 DAGRYLCGAHSDGQLQ 316

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 44.2 bits (103), Expect = 1e-06
 Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 6/88 (6%)

Query: 29  SFYCIARGDPIPVIQWRKNGKRVSGTQSRY---MVQEFPPGGSL--LRIEPVRHARDDAV 83
            F C          +W   G +   +Q                L  L +  V    D+  
Sbjct: 465 HFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVT-RADEGW 523

Query: 84  YECVAENGVGDAVSAEASLTVYEGEEKP 111
           Y C  + G     +A   + V E +   
Sbjct: 524 YWCGVKQGHFYGETAAVYVAVEERKAAG 551

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 37.7 bits (86), Expect = 3e-04
 Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 18/98 (18%)

Query: 17  PRNQAVKAGGITSFYCIARGDPIPVIQW----------------RKNGKRVSGTQSRYMV 60
           P      AG   +  C         I++                   G   +  + R  +
Sbjct: 338 PTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSL 397

Query: 61  QEFPPGGSL-LRIEPVRHARDDAVYECVAENGVGDAVS 97
            E P  G+  + +  +  +RD   Y C+         +
Sbjct: 398 LEEPGNGTFTVILNQLT-SRDAGFYWCLTNGDTLWRTT 434

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 46.7 bits (110), Expect = 7e-08
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 10/109 (9%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN-------GKRVSGTQSRYMVQE 62
             +      ++ V AGG     C  +      +QW          G++ +   +R  +  
Sbjct: 38  QDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVT 97

Query: 63  FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
             P    + I  V    D+  Y C          +A++ +TV    +KP
Sbjct: 98  STPHELSISISNVAL-ADEGEYTCSIFT--MPVRTAKSLVTVLGIPQKP 143

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 47.2 bits (111), Expect = 1e-07
 Identities = 21/103 (20%), Positives = 28/103 (27%), Gaps = 10/103 (9%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
           P ++       AV  G      C     D    +QWR     +   QS         G S
Sbjct: 7   PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSD-------TGRS 59

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           +L +             CV   G G        L VY    + 
Sbjct: 60  VLTVRNAS-LSAAGTRVCVGSCG-GRTFQHTVQLLVYAFPNQL 100

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 41.6 bits (97), Expect = 9e-06
 Identities = 18/106 (16%), Positives = 29/106 (27%), Gaps = 11/106 (10%)

Query: 13  ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRY------MVQEFPPG 66
           +T       V  G   S  C         ++  +   +     +        +++E  P 
Sbjct: 5   VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPL 64

Query: 67  GSL-LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
           G     I  V+  RD   Y C+   G          LTV       
Sbjct: 65  GKALFHIPSVQ-VRDSGQYRCLVICGAA---WDYKYLTVKVKASYM 106

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 45.3 bits (107), Expect = 3e-07
 Identities = 16/108 (14%), Positives = 27/108 (25%), Gaps = 13/108 (12%)

Query: 5   VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEF 63
           +       +   PR    K        C +  +     + + +NGK              
Sbjct: 84  LEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH------- 135

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
               S   I       D   Y C    G  +  S    +T+ +G    
Sbjct: 136 ---NSDFYIPKATLK-DSGSYFCRGLVGSKNVSSETVQITITQGLAVS 179

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 39.1 bits (91), Expect = 7e-05
 Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 19/99 (19%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
             + L P+   V      +  C     P     QW  N   +S   S             
Sbjct: 8   AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS------------ 55

Query: 70  LRIEPVRHARDDA-VYECVAENGVGDAVSAEASLTVYEG 107
             I+      DD+  Y C  +      +S    L V+ G
Sbjct: 56  YFIDAAT--VDDSGEYRCQTQLST---LSDPVQLEVHIG 89

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 15/113 (13%)

Query: 7   FLDPPEITLRPRNQAVKAGGITSFYCIAR-------GDPIPVIQWRKNGKRVSGTQSRYM 59
            LDP      P +  V+     +  C+ +             I W+ N   +   Q   +
Sbjct: 1   LLDPCGYIS-PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTII 59

Query: 60  VQEFPPGGSLLRIEPVRHARDDAVYECVAEN-GVGDAVSAEASLTVYEGEEKP 111
                   S +    +     +    C     G  +      ++      EKP
Sbjct: 60  ----NRTASSVTFTDIAS--LNIQLTCNILTFGQLEQNVYGITIISGLPPEKP 106

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 14/120 (11%), Positives = 37/120 (30%), Gaps = 23/120 (19%)

Query: 6   RFLDPPEITLRPRNQAVKAGGITSFYCI---ARGDPIPVIQWRKNGKRVSGTQ------- 55
           R    P +T+      V  G      C+        +  + W  +  +   ++       
Sbjct: 1   RSQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60

Query: 56  ------SRY-----MVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
                  R+     +V +       L ++ V+   D+ +Y C       +++  +  + +
Sbjct: 61  NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQ-KADEGIYTCEIRLK-NESMVMKKPVEL 118

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 41.8 bits (97), Expect = 9e-06
 Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 27/121 (22%)

Query: 13  ITLRPRNQAVKAGGITSFYCIARGDP---IPVIQWRKNGK------RVSGTQSRYMVQEF 63
           +   PR+  V+ G  T   C  +      +  + W  +         V    S     +F
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKF 180

Query: 64  PPGGSL----------------LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG 107
              G                  ++++ V+ + D  +Y C    G  ++      L V + 
Sbjct: 181 QSLGRFRNRVDLTGDISRNDGSIKLQTVKES-DQGIYTCSIYVGKLES-RKTIVLHVVQD 238

Query: 108 E 108
           E
Sbjct: 239 E 239

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 42.8 bits (100), Expect = 4e-06
 Identities = 12/96 (12%), Positives = 24/96 (25%), Gaps = 11/96 (11%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P    L+PR   V+ GG     C              + +R    +              
Sbjct: 2   PFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRG--------LRWLA 53

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
            ++  +R    +    C         + A   +  +
Sbjct: 54  RQLVDIRE--PETQPVCFFRCA-RRTLQARGLIRTF 86

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 42.2 bits (98), Expect = 6e-06
 Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 11/94 (11%)

Query: 12  EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
           + ++ P    +  GG     C    D   ++       +              PG +   
Sbjct: 1   QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELL---------LPGNNRKV 51

Query: 72  IEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
            E     ++D+   C +        +A+  LTVY
Sbjct: 52  YELSN-VQEDSQPMCYSNCP-DGQSTAKTFLTVY 83

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 42.1 bits (98), Expect = 7e-06
 Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 19/114 (16%)

Query: 10  PPEITLRPRNQAV-KAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQS------RYMVQ 61
             E++      +V +        C +R G+P P I W +NG+R+                
Sbjct: 118 ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRT 177

Query: 62  EFPPGG-----SLLRIEPVRHARDDAVYECVAENGV-----GDAVSAEASLTVY 105
                G     S L +   +    DA + C A   +     G   S    LT++
Sbjct: 178 VREASGLLSLTSTLYLRLRKDD-RDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 18/108 (16%), Positives = 29/108 (26%), Gaps = 20/108 (18%)

Query: 17  PRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGK-------------RVSGTQSRYMVQE 62
           P    V  G      C   G     +++W    +                   + +  + 
Sbjct: 7   PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66

Query: 63  FPPGGSL-----LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
             P   L     L +   +   D+  Y CV   G      A A L V+
Sbjct: 67  RSPPYQLDSQGRLVLAEAQ-VGDERDYVCVVRAGAAGTAEATARLNVF 113

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 41.4 bits (97), Expect = 7e-06
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 14/88 (15%)

Query: 33  IARGDPIPVIQWRKNGKRV---------SGTQSRYMVQEFPPGGSLLRIEPVRHARDDAV 83
           +    P+  + W+K   +V         + +  +  V      GS L I  +  + D+  
Sbjct: 17  VPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS-LTIYNLTSS-DEDE 74

Query: 84  YECVAENGVGDAVSAEASLTVYEGEEKP 111
           YE  + N      + +  L V E   KP
Sbjct: 75  YEMESPNITD---TMKFFLYVLEMVSKP 99

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 40.1 bits (93), Expect = 1e-05
 Identities = 17/95 (17%), Positives = 26/95 (27%), Gaps = 8/95 (8%)

Query: 9   DPPEITLRPRNQAVKAGGIT-SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           +   IT  P    V   G T    C     P   I W+ N K + G +    +       
Sbjct: 6   EMGGITQTP--YKVSISGTTVILTC--PQYPGSEILWQHNDKNIGGDEDDKNIGS---DE 58

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL 102
             L ++          Y C       +  +    L
Sbjct: 59  DHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYL 93

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 10/86 (11%), Positives = 22/86 (25%), Gaps = 22/86 (25%)

Query: 8   LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           +  P I     N         +  C         ++  +  + +   + + M        
Sbjct: 101 VSKPMIYWECSN--------ATLTCEVLEGTDVELKLYQGKEHLRSLRQKTM-------- 144

Query: 68  SLLRIEPVRHARDDAVYECVAENGVG 93
                   +     A ++C A N V 
Sbjct: 145 ------SYQWTNLRAPFKCKAVNRVS 164

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 39.9 bits (93), Expect = 3e-05
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 17/91 (18%)

Query: 32  CIARGDPIPVIQWRKNGKRVSGTQ---------SRYMVQEFPPGGSLLRIEPVRHARDDA 82
                D I  ++W +    V+  +           + +      G L  I+ +   RDD+
Sbjct: 20  NFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI---LANGDLK-IKNLT--RDDS 73

Query: 83  -VYECVAENGVG-DAVSAEASLTVYEGEEKP 111
             Y     +  G   ++    L + E   KP
Sbjct: 74  GTYNVTVYSTNGTRILNKALDLRILEMVSKP 104

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 39.6 bits (92), Expect = 4e-05
 Identities = 15/92 (16%), Positives = 24/92 (26%), Gaps = 15/92 (16%)

Query: 3   RKVRFLDPPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
           R +R L   ++T   +             C     D     +W   G  +          
Sbjct: 103 RILRQLRNIQVTNHSQLF-QNMTCELHLTCSVEDADDNVSFRWEALGNTL---------- 151

Query: 62  EFPPGGSLLRIEPVRHARDDAVYECVAENGVG 93
                   L +        +  Y C+AEN V 
Sbjct: 152 ---SSQPNLTVSWDPRISSEQDYTCIAENAVS 180

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 39.4 bits (91), Expect = 7e-05
 Identities = 5/60 (8%), Positives = 25/60 (41%)

Query: 2   YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ 61
            +++ ++   +  + P+++ +  G   +F C+++   +  +    N   +        ++
Sbjct: 190 VKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIK 249

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 13/101 (12%)

Query: 17  PRNQAVKAGGITSFYCIARGDPIPVIQ--WRKNGKRVSGTQSRYMVQ---------EFPP 65
             N + + GG     C        V Q  W +  + ++   +                 P
Sbjct: 10  TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGP 69

Query: 66  GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           G  L  ++ +    D   Y C+         +    L V E
Sbjct: 70  GLGL-TLQSLTVN-DTGEYFCIYHTYPDGTYTGRIFLEVLE 108

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 36.3 bits (83), Expect = 6e-04
 Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 12/100 (12%)

Query: 12  EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
           E+ +RP+  AV+  G     C    +   V     +  ++   +            +  +
Sbjct: 4   EVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDE-----------QAQWK 52

Query: 72  IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
              V +   D V +C      G   S  ++++VY+   + 
Sbjct: 53  HYLVSNISHDTVLQCHFTCS-GKQESMNSNVSVYQPPRQV 91

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 36.4 bits (83), Expect = 7e-04
 Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 11/55 (20%)

Query: 37 DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENG 91
          D    ++W KNG+ +     ++           L ++      D   Y C     
Sbjct: 24 DSDENLKWEKNGQELPQKHDKH-----------LVLQDFSEVEDSGYYVCYTPAS 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.84
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.82
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.8
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.79
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.79
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.78
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.78
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.77
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.77
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.76
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.76
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.76
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.75
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.75
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.74
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.74
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.72
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.71
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.69
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.69
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.69
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.69
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.68
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.68
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.68
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.67
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.66
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.66
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.66
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.66
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.65
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.65
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.64
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.63
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.63
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.63
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.62
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.62
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.61
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.61
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.61
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.61
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.61
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.61
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.61
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.6
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.6
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.6
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.6
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.6
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.6
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.59
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.59
2ens_A	96	Advanced glycosylation END product-specific recept	99.58
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.58
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.58
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.58
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.58
1he7_A	126	High affinity nerve growth factor receptor; transf	99.58
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.58
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.58
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.58
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.58
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.58
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.58
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.57
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.57
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.57
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.56
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.56
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.56
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.56
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.56
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.56
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.56
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.56
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.56
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.56
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.55
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.55
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.55
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.54
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.54
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.54
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.54
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.54
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.54
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.53
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.53
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.53
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.53
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.53
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.52
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.52
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.52
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.52
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.52
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.51
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.51
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.51
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.51
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.51
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.5
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.5
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.5
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.49
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.49
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.49
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.49
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.49
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.48
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.48
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.48
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.48
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.48
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.47
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.47
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.47
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.47
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.47
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.47
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.46
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.45
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.44
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.44
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.43
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.43
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.43
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.43
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.43
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.43
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.43
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.42
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.42
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.42
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.42
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.42
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.42
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.41
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.4
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.4
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.4
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.4
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.4
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.4
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.4
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.39
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.39
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.38
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.38
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.38
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.38
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.37
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.37
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.37
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.37
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.36
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.36
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.36
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.36
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.35
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.35
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.35
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.35
3khq_A	133	B-cell antigen receptor complex-associated protei	99.35
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.35
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.34
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.34
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.34
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.34
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.33
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.33
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.32
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.32
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.32
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.32
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	99.32
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.32
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.31
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.31
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.31
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.31
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.31
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.3
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.3
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.3
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.3
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.3
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.29
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.29
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.28
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.28
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.28
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.28
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.27
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.27
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.27
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.27
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.27
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.27
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.27
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.27
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.26
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.26
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.26
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.26
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.26
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.26
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	99.26
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.26
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.25
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.25
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	99.25
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.25
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.25
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.25
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.24
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.24
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.24
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.24
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.24
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	99.23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.22
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.22
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.22
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.22
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.22
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.22
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.22
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.22
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.21
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.21
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.21
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.21
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	99.21
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.21
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.21
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.21
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	99.2
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.2
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.2
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.19
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.19
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.19
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.19
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.19
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.19
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.19
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.18
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	99.18
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	99.18
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.18
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	99.17
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	99.17
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.17
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.17
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.17
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.16
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.16
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.16
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.16
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.16
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.15
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.15
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.15
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	99.15
3kg5_A	134	B-cell antigen receptor complex-associated protei	99.15
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.15
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	99.14
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	99.14
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.14
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.14
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.14
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.14
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.14
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.14
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.13
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.13
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.13
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.13
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.12
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.12
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.12
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.12
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.12
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.12
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.12
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	99.11
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.11
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.1
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.1
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.1
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.1
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	99.1
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	99.1
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.1
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.1
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.1
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	99.09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.09
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.09
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	99.09
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	99.09
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.09
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.09
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.08
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.08
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	99.08
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.08
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.07
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.07
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.07
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.06
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	99.06
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.06
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.06
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.06
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.05
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	99.05
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.05
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.05
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.05
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.04
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.04
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	99.04
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.04
1xt5_A	135	Variable region-containing chitin-binding protein	99.04
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.04
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.04
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	99.03
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.03
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.03
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	99.02
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	99.02
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	99.02
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	99.02
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.02
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.01
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.01
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.0
3r8b_B	125	G5-8, enterotoxin type B; immunoglobulin-like, OB-	99.0
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.0
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.0
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.0
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.99
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.99
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	98.99
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.99
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.98
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	98.98
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.98
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.98
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.98
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	98.98
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.98
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.98
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.98
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.97
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.96
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.96
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.96
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.96
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.96
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	98.95
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.95
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.95
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	98.95
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	98.94
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.94
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.94
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.94
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.94
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.94
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.94
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	98.94
1p4b_L	135	Antibody variable light chain; FV antibody, antige	98.93
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.93
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.93
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.93
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	98.92
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	98.92
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	98.92
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	98.92
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	98.92
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.91
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.91
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	98.91
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.91
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	98.91
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	98.91
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.91
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.9
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.9
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	98.43
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.9
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.9
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.9
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.9
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.9
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.9
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	98.89
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.89
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.89
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.89
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.89
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.89
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.89
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.89
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	98.88
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	98.88
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.88
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.88
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	98.88
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	98.88
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.87
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.87
3dmm_D	150	T-cell surface glycoprotein CD8 beta chain; T cell	98.87
2otu_A	115	FV light chain variable domain; antibody FV polygl	98.87
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.87
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.87
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.86
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.86
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.86
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.86
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	98.85
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.85
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.85
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.84
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.83
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.83
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.83
3dmm_C	166	T-cell surface glycoprotein CD8 alpha chain; T cel	98.83
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	98.82
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.82
4esk_A	102	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.82
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.82
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	98.81
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	98.8
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.8
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.8
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	98.8
2ol3_A	142	BM3.3 T-cell receptor alpha-chain; T cell receptor	98.8
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.79
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.79
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.79
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.79
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.78
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.78
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.77
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.77
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.77
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.76
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.75
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.75
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.75
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.75
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.74
4ety_A	118	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.74
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	98.74
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.74
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.74
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.73
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	98.73
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.73
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.72
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.72
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.72
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.71
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.71
2q86_A	229	Valpha14 TCR; INKT cells, TCR, glycolipid recognit	98.71
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.7
1u9k_A	114	Triggering receptor expressed on myeloid cells 1;	98.7
3mbe_C	229	I-AG7; T cell receptor, histocompatability antigen	98.7
3bdb_A	137	Novel immune-type receptor 11; immunoglobulin vari	98.7
3qjh_A	205	5C.C7 alpha chain; immunoglobulin domain, T cell r	98.69
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.69
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	98.68
1jtp_A	148	Single-domain antibody; immunoglobulin, heavy chai	98.67
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.67
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	98.67
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.67
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.67
2yc1_A	117	Single chain antibody fragment 9004G; immune syste	98.65
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	98.65
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	98.65
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	98.65
2nw2_A	200	ELS4 TCR alpha chain; T cell receptor, immune syst	98.65
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.64
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.64
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.64
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.64
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.64
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.63
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.63
1lk2_B	99	Beta-2-microglobulin; class I MHC-peptide complex,	98.63
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.62

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.84  E-value=1.5e-19  Score=90.74  Aligned_cols=96  Identities=30%  Similarity=0.507  Sum_probs=78.1

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.|...+..+.+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.+.... ....|.|.++.. .|.|.|.|.+
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~-~~~~~~~~~-~~~~L~I~~v~~-~D~G~Y~C~a   88 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS-ERLSFPADG-AEHGLLLTAALP-TDAGVYVCRA   88 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC-SSEECCEET-TEEEEEESSCCG-GGCEEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccce-eeEEEeecC-ceEEEEEecCCh-hhCEEEEEEE
Confidence            3678888888889999999999999999999999999999998654 555543322 345699999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEecCC
Q psy2442          89 ENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .|..|.. ...+.|.|..+|
T Consensus        89 ~N~~G~~-~~~~~l~V~~pP  107 (107)
T 3knb_B           89 RNAAGEA-YAAAAVTVLEPP  107 (107)
T ss_dssp             EETTEEE-EEEEEEEEEC--
T ss_pred             EECCCEE-EEEEEEEEEcCC
Confidence            9999875 778888887764

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.82  E-value=3.1e-18  Score=86.70  Aligned_cols=99  Identities=26%  Similarity=0.410  Sum_probs=80.9

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+... .++.+.... ....|.|.++.. .|.|.|.|.+
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~-~~~~~~~~~-~~~~L~I~~v~~-~D~G~Y~C~a   82 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES-EHMKVENSE-NGSKLTILAARQ-EHCGCYTLLV   82 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCS-SSEEEEECS-SEEEEEETTCCT-TTCEEEEEEE
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCC-CCEEEEEcC-CEEEEEECCCCh-hcCEEEEEEE
Confidence            4677777777788999999999999999999999999999887643 455554322 345699999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEecCCCCC
Q psy2442          89 ENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      .|..|.. ...+.|.|.+.|.+|
T Consensus        83 ~N~~g~~-~~~~~l~V~~~p~~P  104 (114)
T 2cqv_A           83 ENKLGSR-QAQVNLTVVDKPDPP  104 (114)
T ss_dssp             ECSSCEE-ECCEEEEEECSCSCC
T ss_pred             EECCCcE-EEEEEEEEECCCCCC
Confidence            9999874 778888888777654

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.80  E-value=3.2e-18  Score=84.91  Aligned_cols=93  Identities=23%  Similarity=0.520  Sum_probs=74.8

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCC-CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ-SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      +|.+...+..+.+..|+.+.|.|.+.|.|.|.+.|++++..+.... .++...... ....|.|.++.. .|+|.|.|.+
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~-~~~~L~I~~~~~-~D~G~Y~C~a   82 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTD-DLTTLIIMDVQK-QDGGLYTLSL   82 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECS-SEEEEEESSCCG-GGCEEEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeeccc-ceEEEEEcCCCc-cCCEEEEEEE
Confidence            5666666777889999999999999999999999999999986432 355554432 345699999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEe
Q psy2442          89 ENGVGDAVSAEASLTVY  105 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~  105 (111)
                      .|..|.. +..+.|.|.
T Consensus        83 ~N~~G~~-~~~~~l~V~   98 (100)
T 3knb_A           83 GNEFGSD-SATVNIHIR   98 (100)
T ss_dssp             EETTEEE-EEEEEEEEE
T ss_pred             EECCCEE-EEEEEEEEE
Confidence            9999874 777777664

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.79  E-value=6.1e-18  Score=85.95  Aligned_cols=101  Identities=22%  Similarity=0.347  Sum_probs=81.6

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      ..+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.....++...........|.|.++.. .|.|.|.|.
T Consensus        13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~   91 (116)
T 2kkq_A           13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNK-KDAGWYTVS   91 (116)
T ss_dssp             CBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECG-GGCEEEEEE
T ss_pred             CCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCc-ccCEEEEEE
Confidence            4567777778888999999999999999999999999999998865445666554322223699999998 999999999


Q ss_pred             eeeCCCceEeeEEEEEEecCCCC
Q psy2442          88 AENGVGDAVSAEASLTVYEGEEK  110 (111)
Q Consensus        88 ~~~~~~~~~~~~~~l~~~~~~~~  110 (111)
                      +.|..|.. ...+.|.|..+|..
T Consensus        92 a~N~~G~~-~~~~~l~V~~~p~~  113 (116)
T 2kkq_A           92 AVNEAGVT-TCNTRLDVTARPNQ  113 (116)
T ss_dssp             EEETTEEE-EEEEEEEEECCSCC
T ss_pred             EEcCCCeE-EEEEEEEEeCCCCC
Confidence            99999874 77888888877654

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=3.4e-18  Score=86.04  Aligned_cols=102  Identities=26%  Similarity=0.412  Sum_probs=82.1

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      ..+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.....++...........|.|.++.. .|.|.|.|.
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~   84 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTL-DDDGNYTIM   84 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCT-TTCSCCEEE
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCCh-hhCEEEEEE
Confidence            3567777677778899999999999999999999999999988865445666554322334699999998 999999999


Q ss_pred             eeeCCCceEeeEEEEEEecCCCCC
Q psy2442          88 AENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        88 ~~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      +.|..|.. ...+.|.|...+..|
T Consensus        85 a~N~~g~~-~~~~~l~V~~~~~~P  107 (110)
T 2dm2_A           85 AANPQGRI-SCTGRLMVQAVNSGP  107 (110)
T ss_dssp             EECTTCCE-EECCCEEEECCSCCS
T ss_pred             EEECCCeE-EEEEEEEEECCCCCC
Confidence            99999875 777888888877665

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.78  E-value=8.6e-18  Score=83.56  Aligned_cols=100  Identities=29%  Similarity=0.415  Sum_probs=79.8

Q ss_pred             EEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEE
Q psy2442           5 VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus         5 l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y   84 (111)
                      |.+..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++...... ....|.|.++.. .|.|.|
T Consensus         3 l~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~-~~~~~~~~~-~~~~L~i~~~~~-~D~G~Y   79 (103)
T 3qp3_A            3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQES-SKIHYTNTS-GVLTLEILDCHT-DDSGTY   79 (103)
T ss_dssp             TTTCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCC-SSEEEEEET-TEEEEEECSCCG-GGCEEE
T ss_pred             CCCCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCC-CCEEEEECC-CEEEEEEcCCCc-ccCEEE
Confidence            34556788888888888999999999999999999999999999988654 455444322 334599999998 999999


Q ss_pred             EEEeeeCCCceEeeEEEEEEecCC
Q psy2442          85 ECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        85 ~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .|.+.|..|.. .....|.|.+.+
T Consensus        80 ~C~a~N~~G~~-~~~~~l~V~~~~  102 (103)
T 3qp3_A           80 RAVCTNYKGEA-SDYATLDVTGGD  102 (103)
T ss_dssp             EEEEEETTEEE-EEEEEEEEECC-
T ss_pred             EEEEEeCCCcE-EEEEEEEEECCC
Confidence            99999999874 777788776543

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.78  E-value=3e-18  Score=85.85  Aligned_cols=101  Identities=31%  Similarity=0.451  Sum_probs=67.2

Q ss_pred             eEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeE
Q psy2442           4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAV   83 (111)
Q Consensus         4 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~   83 (111)
                      .|.+..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++....   ....|.+.++.. .|.|.
T Consensus         4 ~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~---~~~~L~i~~v~~-~D~G~   78 (108)
T 3kvq_A            4 TVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED-SGIVLKD---GNRNLTIRRVRK-EDEGL   78 (108)
T ss_dssp             -------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCB-TTEEEET---TTTEEEECSCCG-GGCEE
T ss_pred             eECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccC-CCeEEeC---CCcEEEEeecCc-ccCEE
Confidence            456677888887777888999999999999999999999999998877543 3333332   345599999998 99999


Q ss_pred             EEEEeeeCCCceEeeEEEEEEecCCCC
Q psy2442          84 YECVAENGVGDAVSAEASLTVYEGEEK  110 (111)
Q Consensus        84 y~c~~~~~~~~~~~~~~~l~~~~~~~~  110 (111)
                      |.|.+.|..|.. ...+.|.|.+++..
T Consensus        79 Y~C~a~n~~g~~-~~~~~l~V~~~~~~  104 (108)
T 3kvq_A           79 YTCQACSVLGCA-KVEAFFIIEGAQEK  104 (108)
T ss_dssp             EEEEEC----CE-EEEEEEEEEC----
T ss_pred             EEEEEEeCCCce-EEEEEEEEeCCCcc
Confidence            999999998875 77888888877654

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.77  E-value=2.2e-17  Score=81.66  Aligned_cols=96  Identities=29%  Similarity=0.474  Sum_probs=74.5

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+............+ ....|.|..+.. .|+|.|.|.+
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~-~~~~L~i~~v~~-~D~G~Y~C~a   81 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEK-GLHSLIFEVVRA-SDAGAYACVA   81 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETT-TEEEEEESSCCG-GGCEEEEEEE
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCC-CeEEEEECCCCc-ccCEEEEEEE
Confidence            45666666777788999999999999999999999999999886543222222211 334699999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEecC
Q psy2442          89 ENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~~  107 (111)
                      .|..|.. ...+.|.|...
T Consensus        82 ~n~~g~~-~~~~~l~V~~~   99 (100)
T 2kdg_A           82 KNRAGEA-TFTVQLDVLAK   99 (100)
T ss_dssp             EETTEEE-EEEEEEEEECC
T ss_pred             EcCCCeE-EEEEEEEEEec
Confidence            9999874 77888877654

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=3.9e-17  Score=80.79  Aligned_cols=95  Identities=37%  Similarity=0.613  Sum_probs=76.9

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      ..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....++...    ....|.|.++.. .|.|.|.|.
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~-~d~G~Y~C~   80 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ----EQGTLQIKNLRI-SDTGTYTCV   80 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEEC----TTCCEEEESCCT-TTCCEEEEE
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEc----CCCEEEEccCCc-ccCEEEEEE
Confidence            356788778888889999999999999999999999999988876443454443    233599999998 999999999


Q ss_pred             eeeCCCceEeeEEEEEEecCC
Q psy2442          88 AENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        88 ~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      +.|..|.. ...+.|.|.+++
T Consensus        81 a~n~~g~~-~~~~~l~V~~~~  100 (100)
T 2edj_A           81 ATSSSGET-SWSAVLDVTESG  100 (100)
T ss_dssp             EECSSCCC-BCCEEEEEESCC
T ss_pred             EEcCCCCE-EEEEEEEEecCC
Confidence            99998875 777788777653

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.76  E-value=4e-17  Score=86.62  Aligned_cols=102  Identities=27%  Similarity=0.378  Sum_probs=80.9

Q ss_pred             eEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeE
Q psy2442           4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAV   83 (111)
Q Consensus         4 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~   83 (111)
                      .+.+..+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+... .++...........|.|.++.. .|.|.
T Consensus        35 ~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~-~~~~~~~~~~~~~~L~I~~v~~-~D~G~  112 (154)
T 1fhg_A           35 EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES-RHFQIDYDEEGNCSLTISEVCG-DDDAK  112 (154)
T ss_dssp             CCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCS-SSEEEEECTTCEEEEEESSCCG-GGCEE
T ss_pred             cccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCC-CcEEEEECCCCeEEEEECCCCh-hcCEE
Confidence            345556788888888888999999999999999999999999999988643 4555543222335699999998 99999


Q ss_pred             EEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          84 YECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        84 y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      |.|.+.|..|.. ...+.|.|..+|
T Consensus       113 Y~C~a~N~~G~~-~~~~~l~V~~~p  136 (154)
T 1fhg_A          113 YTCKAVNSLGEA-TCTAELLVETMG  136 (154)
T ss_dssp             EEEEEEETTEEE-EEEEEEEEECC-
T ss_pred             EEEEEEECCCeE-EEEEEEEEeCcC
Confidence            999999999874 777778777655

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=7.4e-18  Score=84.72  Aligned_cols=100  Identities=30%  Similarity=0.484  Sum_probs=80.3

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+..... ............|.|.++.. .|.|.|.|.+
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~-~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a   85 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSA-HKMLVRENGVHSLIIEPVTS-RDAGIYTCIA   85 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSS-EEEEECTTSCEEEEESSCCG-GGCSBBCEEE
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCc-eEEEEecCCeEEEEEeeCCc-ccCEEEEEEE
Confidence            477888888888999999999999999999999999999888764423 22222222345699999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEecCCCCC
Q psy2442          89 ENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      .|..|.. ...+.|.|..+|.+|
T Consensus        86 ~n~~g~~-~~~~~l~V~~~p~~P  107 (110)
T 2dm3_A           86 TNRAGQN-SFSLELVVAAKESGP  107 (110)
T ss_dssp             ECSSCEE-EECCEEEEECCCCSS
T ss_pred             ECCCCEE-EEEEEEEEeCCCCCC
Confidence            9999874 778888888888765

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.76  E-value=1e-16  Score=79.07  Aligned_cols=95  Identities=28%  Similarity=0.300  Sum_probs=74.1

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++...........|.|.++.. .|+|.|.|.+
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a   81 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERS-DRIYWYWPEDNVCELVIRDVTG-EDSASIMVKA   81 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC-SSEEEEEEETTEEEEEECSCCG-GGCEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCC-CCEEEEEcCCCEEEEEECCCCc-CCCEEEEEEE
Confidence            3567777777788999999999999999999999999999988654 3333322111444699999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEec
Q psy2442          89 ENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~  106 (111)
                      .|..|.. .....|.|.+
T Consensus        82 ~N~~g~~-~~~~~l~V~~   98 (99)
T 1g1c_A           82 INIAGET-SSHAFLLVQA   98 (99)
T ss_dssp             EETTEEE-EEEEEEEEEC
T ss_pred             EECCCcE-EEEEEEEEec
Confidence            9998874 6677776654

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.75  E-value=1.3e-16  Score=78.73  Aligned_cols=95  Identities=29%  Similarity=0.470  Sum_probs=74.1

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....++.... +.....|.|.++.. .|.|.|.|.+
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~-~D~G~Y~C~a   81 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEA-EGGLCRLRILAAER-GDAGFYTCKA   81 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEEC-GGGEEEEEESSCCG-GGCEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEEC-CCCEEEEEEccCCc-CCCEEEEEEE
Confidence            356777777778899999999999999999999999999998865434444332 11223599999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEec
Q psy2442          89 ENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~  106 (111)
                      .|..|.. ...+.|.|.+
T Consensus        82 ~N~~g~~-~~~~~l~V~~   98 (99)
T 1u2h_A           82 VNEYGAR-QCEARLEVRG   98 (99)
T ss_dssp             EETTEEE-EEEEEEEEEC
T ss_pred             EECCCce-eEEEEEEEEC
Confidence            9998874 6677776653

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=1.2e-16  Score=81.27  Aligned_cols=97  Identities=22%  Similarity=0.313  Sum_probs=75.9

Q ss_pred             cCCCeeEEc---CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEE
Q psy2442           8 LDPPEITLR---PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus         8 ~~~p~~~~~---~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y   84 (111)
                      ..+|.+...   ...+.+..|+.+.|.|.+.+.|.|.+.|++++..+..  .++...... ....|.|.++.. .|+|.|
T Consensus        19 ~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~--~~~~~~~~~-~~~~L~i~~~~~-~D~G~Y   94 (118)
T 2e7c_A           19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT--SRVHVRTSD-FDTVFFVRQAAR-SDSGEY   94 (118)
T ss_dssp             SEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCC--SSCEEEECS-SEEEEEESSCCT-TTCEEE
T ss_pred             ccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCC--CcEEEEECC-CeEEEEECCCCh-hcCEEE
Confidence            345666432   3557888999999999999999999999999998863  344443322 345599999998 999999


Q ss_pred             EEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          85 ECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        85 ~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      .|.+.|..|.. ...+.|.|...|+
T Consensus        95 ~C~a~N~~G~~-~~~~~l~V~~~P~  118 (118)
T 2e7c_A           95 ELSVQIENMKD-TATIRIRVVEKAG  118 (118)
T ss_dssp             EEEEECSSCEE-CCEEEEEEECCCC
T ss_pred             EEEEEeCCCeE-EEEEEEEEEcCCC
Confidence            99999999874 7888888887763

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.74  E-value=2.9e-16  Score=77.37  Aligned_cols=93  Identities=28%  Similarity=0.554  Sum_probs=74.2

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++...... ....|.+.++.. .|.|.|.|.+
T Consensus         5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~~~~~-~~~~L~i~~~~~-~d~G~Y~C~a   81 (99)
T 3puc_A            5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQG-GKYKLSEDK-GGFFLEIHKTDT-SDSGLYTCTV   81 (99)
T ss_dssp             EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSS-SSEEEEEET-TEEEEEECSCCG-GGCEEEEEEE
T ss_pred             CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCC-CCEEEEEeC-CEEEEEECCCCc-ccCEEEEEEE
Confidence            4567777777788999999999999999999999999999988644 555554322 334599999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEe
Q psy2442          89 ENGVGDAVSAEASLTVY  105 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~  105 (111)
                      .|..|.. ...+.|.|.
T Consensus        82 ~n~~g~~-~~~~~l~V~   97 (99)
T 3puc_A           82 KNSAGSV-SSSCKLTIK   97 (99)
T ss_dssp             EETTEEE-EEEEEEEEE
T ss_pred             EeCCCcE-eEEEEEEEE
Confidence            9998874 667776664

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.72  E-value=2e-16  Score=77.31  Aligned_cols=89  Identities=18%  Similarity=0.248  Sum_probs=69.1

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--eeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      +|.+...+..+.+..|+.+.|.|.+.|.|.|.+.|++++  ..+... ......  . ....|.|.++.. .|+|.|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~-~~~~~~--~-~~~~L~i~~~~~-~D~G~Y~C~   76 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE-LLVDAK--S-STTSIFFPSAKR-ADSGNYKLK   76 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTT-SEEEEE--T-TEEEEECTTBCG-GGCEEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCc-EEEEec--C-CEEEEEECCCCh-hcCEEEEEE
Confidence            566665666778899999999999999999999999998  766532 222221  1 345689999998 999999999


Q ss_pred             eeeCCCceEeeEEEEEE
Q psy2442          88 AENGVGDAVSAEASLTV  104 (111)
Q Consensus        88 ~~~~~~~~~~~~~~l~~  104 (111)
                      +.|..|.. ...+.|.|
T Consensus        77 a~N~~G~~-~~~~~l~V   92 (93)
T 1wit_A           77 VKNELGED-EAIFEVIV   92 (93)
T ss_dssp             EEETTEEE-EEEEEEEE
T ss_pred             EEcCCCeE-EEEEEEEE
Confidence            99999864 66666654

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1.3e-16  Score=81.15  Aligned_cols=94  Identities=36%  Similarity=0.580  Sum_probs=75.6

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....++....    ...|.|.++.. .|.|.|.|.+
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~----~~~L~i~~v~~-~D~G~Y~C~a   81 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE----NGVLQIRYAKL-GDTGRYTCIA   81 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEE----TTEEEEESCCG-GGCCCEEEEE
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEcc----CCEEEEccCCc-CCCEEEEEEE
Confidence            466776677778899999999999999999999999999988865445555543    23599999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEecCC
Q psy2442          89 ENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .|..|.. ...+.|.|...+
T Consensus        82 ~n~~g~~-~~~~~l~V~~~~  100 (118)
T 2eo9_A           82 STPSGEA-TWSAYIEVQEFG  100 (118)
T ss_dssp             ECSSCEE-EEECCEEEECCS
T ss_pred             EcCCCcE-EEEEEEEEEeCC
Confidence            9998874 667777776554

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=1.8e-16  Score=78.21  Aligned_cols=93  Identities=29%  Similarity=0.469  Sum_probs=72.8

Q ss_pred             EEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEE
Q psy2442           5 VRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus         5 l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y   84 (111)
                      +.+..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....  .....   ....|.|.++.. .|.|.|
T Consensus         6 ~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~--~~~~~---~~~~L~i~~v~~-~D~G~Y   79 (99)
T 2yr3_A            6 SGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYAR--STCEA---GVAELHIQDALP-EDHGTY   79 (99)
T ss_dssp             SCCCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCC--CEEET---TEEEEEECSCCT-TCCBCE
T ss_pred             CCcccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccc--eEeeC---CeEEEEECCCCh-hhCEEE
Confidence            345667888877888889999999999999999999999999988875431  12221   345599999998 999999


Q ss_pred             EEEeeeCCCceEeeEEEEEE
Q psy2442          85 ECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        85 ~c~~~~~~~~~~~~~~~l~~  104 (111)
                      .|.+.|..|.. ...+.|.|
T Consensus        80 ~C~a~N~~g~~-~~~~~l~V   98 (99)
T 2yr3_A           80 TCLAENALGQV-SCSAWVTV   98 (99)
T ss_dssp             EEEEECSSCEE-EEECCEEE
T ss_pred             EEEEEECCCeE-EEEEEEEE
Confidence            99999998864 65655544

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.69  E-value=3.6e-16  Score=78.23  Aligned_cols=93  Identities=30%  Similarity=0.512  Sum_probs=75.1

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+... .++...... ....|.|.++.. .|.|.|.|.+
T Consensus        13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~-~~~~~~~~~-~~~~L~I~~v~~-~D~G~Y~C~a   89 (106)
T 1nct_A           13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTS-ARHQVTTTK-YKSTFEISSVQA-SDEGNYSVVV   89 (106)
T ss_dssp             CCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTC-SSEEEEECS-SEEEEEECCCCS-SCCSEEEECC
T ss_pred             CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCC-CCEEEEECC-CEEEEEECcCCc-hhCEEEEEEE
Confidence            4677788888889999999999999999999999999998877543 455554322 345699999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEe
Q psy2442          89 ENGVGDAVSAEASLTVY  105 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~  105 (111)
                      .|..|.. ...+.|.|.
T Consensus        90 ~N~~G~~-~~~~~l~V~  105 (106)
T 1nct_A           90 ENSEGKQ-EAEFTLTIQ  105 (106)
T ss_dssp             BCSSCBC-CEEEEEEEC
T ss_pred             EeCCCeE-EEEEEEEEE
Confidence            9998874 677776653

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=1.3e-15  Score=75.41  Aligned_cols=93  Identities=22%  Similarity=0.210  Sum_probs=72.8

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      ++.+...+..+.+..|+.+.|.|.+  .|.+.+.|+++|..+... .++.+.... ....|.|.++.. .|+|.|.|.+.
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~-~r~~i~~~~-~~~~L~I~~v~~-~D~G~Y~C~a~   81 (100)
T 2yuz_A            7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQES-DRLKVVQKG-RIHKLVIANALT-EDEGDYVFAPD   81 (100)
T ss_dssp             CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCC-SSEEEEECS-SEEEEEESSCCG-GGCSEEEEEES
T ss_pred             CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCC-CcEEEEEeC-CEEEEEECCCCh-hhCEEEEEEEc
Confidence            5666667777889999999999999  678899999999998654 566655421 334599999998 99999999999


Q ss_pred             eCCCceEeeEEEEEEecCCCC
Q psy2442          90 NGVGDAVSAEASLTVYEGEEK  110 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~~~~~~~  110 (111)
                      |.  . ......|.|.++|..
T Consensus        82 N~--~-~~~~a~L~V~~~P~s   99 (100)
T 2yuz_A           82 AY--N-VTLPAKVHVISGPSS   99 (100)
T ss_dssp             SS--C-CCEEEEEEEECCSCC
T ss_pred             CC--C-eeEEEEEEEeCCCCC
Confidence            97  2 256677788887753

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.68  E-value=2.5e-15  Score=73.10  Aligned_cols=84  Identities=24%  Similarity=0.383  Sum_probs=67.0

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      ++.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+...           ....|.+.++.. .|+|.|.|.+.
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-----------~~~~L~i~~v~~-~d~G~Y~C~a~   70 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----------TKKLYMVPYVDL-EHQGTYWCHVY   70 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC-----------CSSEEEESSCCG-GGCEEEEEEEE
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC-----------CCCeEEECCCCH-HhCEEEEEEEE
Confidence            455666677778899999999999999999999999998887543           223488899998 99999999999


Q ss_pred             eCCCceEeeEEEEEEe
Q psy2442          90 NGVGDAVSAEASLTVY  105 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~~  105 (111)
                      |..|...+..+.+.|.
T Consensus        71 n~~g~~~s~~~~l~V~   86 (91)
T 3bfo_A           71 NDRDSQDSKKVEIIID   86 (91)
T ss_dssp             CSSCEEECCCEEEEEC
T ss_pred             cCCCCEEeeeEEEEEe
Confidence            9988643455666654

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.68  E-value=8.9e-15  Score=71.86  Aligned_cols=89  Identities=19%  Similarity=0.343  Sum_probs=69.7

Q ss_pred             EEcCcceeeecCCcEEEEEEEecc-CCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ...+..+.+..|+.+.|.|.+.+. |.+.+.|++++..+... .++...... ....|.|.++.. .|.|.|.|.+.|..
T Consensus         5 ~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~-~~~~~~~~~-~~~~L~i~~v~~-~D~G~Y~C~a~n~~   81 (97)
T 2bk8_A            5 SGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENS-EKYEITYED-GVAILYVKDITK-LDDGTYRCKVVNDY   81 (97)
T ss_dssp             ECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSS-SSEEEEEET-TEEEEEECSCCG-GGCEEEEEEEECSS
T ss_pred             eccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCC-CCEEEEEcC-CeEEEEEecCCh-hhCeEEEEEEECCC
Confidence            345566788999999999999996 88899999999988643 455543322 334699999998 99999999999999


Q ss_pred             CceEeeEEEEEEec
Q psy2442          93 GDAVSAEASLTVYE  106 (111)
Q Consensus        93 ~~~~~~~~~l~~~~  106 (111)
                      |.. .....|.|.+
T Consensus        82 g~~-~~~~~l~V~~   94 (97)
T 2bk8_A           82 GED-SSYAELFVKG   94 (97)
T ss_dssp             CEE-EEEEEEEETT
T ss_pred             CeE-eEEEEEEEEe
Confidence            874 6677776654

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.67  E-value=2.8e-15  Score=74.60  Aligned_cols=97  Identities=18%  Similarity=0.233  Sum_probs=69.9

Q ss_pred             ecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCce--EEEeCC--CCCeEEEEccCCCCCCCe
Q psy2442           7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRY--MVQEFP--PGGSLLRIEPVRHARDDA   82 (111)
Q Consensus         7 v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~--~~~~~~--~~~~~l~~~~~~~~~d~g   82 (111)
                      |..+|.+....   ....++.+.+.|.+.|.|.|.+.|+++|..+... .+.  ......  .....|.|.++.. .|+|
T Consensus         1 V~~pP~i~~~~---~~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G   75 (103)
T 1wwb_X            1 VHFAPTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNES-KYICTKIHVTNHTEYHGCLQLDNPTH-MNNG   75 (103)
T ss_dssp             CCCCCCCCCCC---CCCCCCEEEEEEEEECSSCCEEEEEETTEEECCC-SSEEEEEEEECSSEEEEEEEEESCCG-GGCE
T ss_pred             CCCCCEEEecc---CceECcEEEEEEEEEEeCCCEEEEEECCEECCCC-CcEeEEEEecCCcEEEEEEEECCCCc-ccCE
Confidence            34566653221   1245778999999999999999999999988654 332  111111  0123389999998 9999


Q ss_pred             EEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          83 VYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      .|.|.+.|..|.. ...+.|.+...|.
T Consensus        76 ~Y~C~A~N~~G~~-~~~~~l~V~~~P~  101 (103)
T 1wwb_X           76 DYTLIAKNEYGKD-EKQISAHFMGWPG  101 (103)
T ss_dssp             EEEEEEECSSCEE-EEEEEECCSCCCC
T ss_pred             EEEEEEEeCCCcE-eEEEEEEECCCCC
Confidence            9999999999985 7888888877765

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=7.8e-16  Score=77.97  Aligned_cols=101  Identities=18%  Similarity=0.212  Sum_probs=75.0

Q ss_pred             ceeEEecCCC-eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           2 YRKVRFLDPP-EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         2 ~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .++|.|..+| .+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+... .++.+...++....|.|.++.. .|
T Consensus         4 ~a~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~-~~~~~~~~~~~~~~L~I~~v~~-~D   81 (115)
T 2cr6_A            4 GSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHAN-ELNEIDAQPGGYHVLTLRQLAL-KD   81 (115)
T ss_dssp             CCCCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCS-SSCCBCCBTTTBCCBEECSCCT-TT
T ss_pred             cEEEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCC-CcEEEEEcCCCEEEEEEcCCCh-hh
Confidence            4677888766 6777778888999999999999999998899999999887643 3333321112334599999998 99


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          81 DAVYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      +|.|.|.+    |.. .....|.|..+|.
T Consensus        82 ~G~Y~C~~----g~~-~~~~~L~V~~~p~  105 (115)
T 2cr6_A           82 SGTIYFEA----GDQ-RASAALRVTEKPS  105 (115)
T ss_dssp             CEEEEEEE----TTE-ECCEEEEEECCSS
T ss_pred             CEEEEEEE----CCe-eEEEEEEEECCCc
Confidence            99999994    332 5556677766553

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=4.6e-15  Score=73.66  Aligned_cols=94  Identities=24%  Similarity=0.323  Sum_probs=72.5

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+..+.+..|+.+.|.|.+.+ +.+.+.|++++..+... .++.+.... ....|.|.++.. .|+|.|.|.+
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~-~~~~~~~~~-~~~~L~I~~v~~-~D~G~Y~C~a   82 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKS-QKYDVVCEG-TMAMLVIRGASL-KDAGEYTCEV   82 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCS-SSEEEEEET-TEEEEEESSCCT-TTCSEEEEEC
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCC-CCEEEEECC-CEEEEEECCCCc-ccCEEEEEEE
Confidence            4567777777788999999999999987 77789999999887643 455544322 334599999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEecCCCCC
Q psy2442          89 ENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      .|    . ...+.|.|..+|..|
T Consensus        83 ~n----~-~~~~~l~V~~~p~~~  100 (103)
T 2edf_A           83 EA----S-KSTASLHVEEKASGP  100 (103)
T ss_dssp             SS----C-EEEEEEEECCCSSSS
T ss_pred             cc----C-CcEEEEEEeCCCCCC
Confidence            88    2 556777787777654

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=3.7e-15  Score=74.13  Aligned_cols=93  Identities=18%  Similarity=0.277  Sum_probs=69.4

Q ss_pred             CCeeEEcCcc---eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEE
Q psy2442          10 PPEITLRPRN---QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYEC   86 (111)
Q Consensus        10 ~p~~~~~~~~---~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c   86 (111)
                      +|.+...+..   +.+..|+.+.|.|.+.+.+.+ +.|++++..+... .++.+.... ....|.|.++.. .|+|.|.|
T Consensus         7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~-~~~~~~~~~-~~~~L~I~~~~~-~D~G~Y~C   82 (104)
T 2e6p_A            7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEES-ELLVVKMDG-RKHRLILPEAKV-QDSGEFEC   82 (104)
T ss_dssp             SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCB-TTBEEEEET-TEEEEEESSCCT-TTCEEEEE
T ss_pred             CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCC-CCEEEEeCC-CEEEEEECCCCh-hhCEEEEE
Confidence            4555555555   678899999999999998888 9999999988643 455444311 335699999998 99999999


Q ss_pred             EeeeCCCceEeeEEEEEEecCCCCC
Q psy2442          87 VAENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        87 ~~~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      .+.|..+     .+.|.|.++|.+|
T Consensus        83 ~a~n~~~-----~~~l~V~~~P~pp  102 (104)
T 2e6p_A           83 RTEGVSA-----FFGVTVQDPSGPS  102 (104)
T ss_dssp             ECSSCCC-----CEEEEEECCCCSS
T ss_pred             EECCceE-----EEEEEEcCCCCCc
Confidence            9988643     3556677777654

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.66  E-value=8.7e-15  Score=73.03  Aligned_cols=99  Identities=16%  Similarity=0.175  Sum_probs=70.8

Q ss_pred             ecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCe-ecc------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442           7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK-RVS------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus         7 v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~-~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      |..+|.+...+..+.+..|++++|.|...+.+.+.+.|++.+. .+.      ....++...........|.|.++.. .
T Consensus         3 v~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~-~   81 (108)
T 3m45_A            3 VKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSL-S   81 (108)
T ss_dssp             -----CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCG-G
T ss_pred             cccCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCCh-h
Confidence            3455666667778899999999999999998888999998765 111      1123555443222345599999998 9


Q ss_pred             CCeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          80 DDAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        80 d~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      |+|.|.|.+.| .+. ......|.|..+|
T Consensus        82 D~G~Y~C~~~n-~~~-~~~~~~L~V~~~P  108 (108)
T 3m45_A           82 DEGQYTCSLFT-MPV-KTSKAYLTVLGVP  108 (108)
T ss_dssp             GCEEEEEEECS-SSC-EEEEEEEEEECCC
T ss_pred             HCeEEEEEEEc-CCC-cEEEEEEEEEcCC
Confidence            99999999999 665 3777888887764

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.65  E-value=2.5e-15  Score=73.69  Aligned_cols=86  Identities=21%  Similarity=0.426  Sum_probs=67.4

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      +|.+...+..+.+..|+.+.|.|.+.+.+ +.+.|++++..+... .++..     ....|.|.++.. .|+|.|.|.+.
T Consensus         9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~-~~~~~-----~~~~L~i~~~~~-~D~G~Y~C~a~   80 (95)
T 2ckn_A            9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVES-NRTRI-----TGEEVEVRDSIP-ADSGLYACVTS   80 (95)
T ss_dssp             SCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCC-SSEEE-----CSSEEEESSCCG-GGSEEEEEEEE
T ss_pred             CCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCC-CCEEE-----eCCEEEECCCCh-HHCEEEEEEec
Confidence            45555556667889999999999999887 799999998877643 45444     234599999998 99999999999


Q ss_pred             eCCCceEeeEEEEEE
Q psy2442          90 NGVGDAVSAEASLTV  104 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~  104 (111)
                      |..|.. ...+.+.|
T Consensus        81 n~~g~~-~~~~~l~V   94 (95)
T 2ckn_A           81 SPSGSD-TTYFSVNV   94 (95)
T ss_dssp             ETTEEE-EEEEEEEE
T ss_pred             cCCCcE-EEEEEEEE
Confidence            988864 66666654

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.65  E-value=1.5e-14  Score=80.20  Aligned_cols=98  Identities=23%  Similarity=0.406  Sum_probs=77.4

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCC-CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ-SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      +|.+ ..+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.... .++.+.... ....|.|.++.. .|.|.|.|.+
T Consensus        19 ~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~-~~~~L~i~~~~~-~d~G~Y~C~a   95 (215)
T 3mtr_A           19 APKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTP-SASYLEVTPDSE-NDFGNYNCTA   95 (215)
T ss_dssp             EEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEET-TEEEEEECCCSG-GGCEEEEEEE
T ss_pred             CCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCC-CeeEEEEecCCh-hhCeEEEEEE
Confidence            4555 45666788899999999999999999999999999886442 344444322 346699999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEecCCCCC
Q psy2442          89 ENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      .|..|.. ...+.+.+..+|..|
T Consensus        96 ~n~~g~~-~~~~~l~v~~~P~~p  117 (215)
T 3mtr_A           96 VNRIGQE-SLEFILVQADTPSSP  117 (215)
T ss_dssp             ECSSCEE-EEEEEEEECCCCCCC
T ss_pred             EECCCce-EEEEEEEECCCCCCC
Confidence            9999875 777888887777665

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.64  E-value=1.6e-14  Score=71.74  Aligned_cols=90  Identities=20%  Similarity=0.279  Sum_probs=67.9

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCC-ceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS-RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENG   91 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~   91 (111)
                      +...+..+.+..|+.+.|.|.+.+ +.+.+.|++++..+..... ++.+.... ....|.|.++.. .|+|.|.|.+.| 
T Consensus        10 ~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~-~~~~L~I~~~~~-~D~G~Y~C~a~n-   85 (103)
T 1x44_A           10 VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEG-KKHILIIEGATK-ADAAEYSVMTTG-   85 (103)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEET-TEEEEEEEEECT-TTCSEEEEEETT-
T ss_pred             eeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcC-CEEEEEECCCCc-ccCEEEEEEECC-
Confidence            555666778899999999999977 6689999999998865421 44554322 335699999998 999999999977 


Q ss_pred             CCceEeeEEEEEEecCCCC
Q psy2442          92 VGDAVSAEASLTVYEGEEK  110 (111)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~  110 (111)
                         . .....|.|..+|.+
T Consensus        86 ---~-~~~~~l~V~~~p~p  100 (103)
T 1x44_A           86 ---G-QSSAKLSVDLKSGP  100 (103)
T ss_dssp             ---E-EEEEEEEEECCCSC
T ss_pred             ---C-cEEEEEEEeCCCCC
Confidence               2 55667777776654

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.63  E-value=3.8e-14  Score=69.29  Aligned_cols=79  Identities=15%  Similarity=0.086  Sum_probs=62.3

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .++.+...+..+.+..|+++.|.|.+.+ +.+.+.|+++|..+... .++.+.... ....|.|.++.. .|+|.|.|.+
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~-~~~~i~~~g-~~~~L~I~~v~~-~D~G~Y~C~a   79 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAAS-PDCEIIEDG-KKHILILHNCQL-GMTGEVSFQA   79 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCB-TTEEEEEET-TEEEEEECSCCG-GGCEEEEEEE
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCC-CCEEEEEEC-CEEEEEECCCCh-hhCEEEEEEE
Confidence            3567777788889999999999999976 44689999999988644 555554311 334699999998 9999999999


Q ss_pred             eeC
Q psy2442          89 ENG   91 (111)
Q Consensus        89 ~~~   91 (111)
                      .|.
T Consensus        80 ~n~   82 (93)
T 1waa_A           80 ANT   82 (93)
T ss_dssp             TTE
T ss_pred             CCC
Confidence            773

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.63  E-value=1.9e-14  Score=79.57  Aligned_cols=101  Identities=33%  Similarity=0.554  Sum_probs=76.1

Q ss_pred             eeEEecCC-------CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccC
Q psy2442           3 RKVRFLDP-------PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPV   75 (111)
Q Consensus         3 ~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   75 (111)
                      +.|.|...       |.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....++...     ...|.|..+
T Consensus        96 ~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~-----~~~L~i~~v  170 (212)
T 2yd1_A           96 ATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK-----DGFLQIENS  170 (212)
T ss_dssp             EEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEE-----TTEEEECSC
T ss_pred             EEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEcc-----CCeEEEccC
Confidence            35566554       667667766778889999999999999999999999999886544455432     235999999


Q ss_pred             CCCCCCeEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          76 RHARDDAVYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      .. .|.|.|.|.+.|..|......+.|.|.+...
T Consensus       171 ~~-~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~  203 (212)
T 2yd1_A          171 RE-EDQGKYECVAENSMGTEHSKATNLYVKVRRV  203 (212)
T ss_dssp             CG-GGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             Ch-hhCEEEEEEeecCCCceeEEEEEEEEEeccc
Confidence            98 9999999999999987533346777766543

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.63  E-value=4.7e-14  Score=71.10  Aligned_cols=97  Identities=19%  Similarity=0.236  Sum_probs=73.3

Q ss_pred             eeEEecCC-CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           3 RKVRFLDP-PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         3 ~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      +.|.|... |.+...+....+..|+.+.|.|.+.+.  +.+.|++++..+... .++.+.... ....|.|.++.. .|+
T Consensus        11 ~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~-~~~~~~~~~-~~~~L~I~~v~~-~D~   85 (113)
T 2edh_A           11 AMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDG-DRHSLRQDG-ARCELQIRGLVA-EDA   85 (113)
T ss_dssp             CCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCS-SSEEEEEET-TEEEEEECSCCS-TTC
T ss_pred             EEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCC-CcEEEEECC-CEEEEEECCCCh-hhC
Confidence            45677744 577777778889999999999999764  689999999887643 566554321 334599999998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      |.|.|.+    +. ......|.|..+|.
T Consensus        86 G~Y~C~a----~~-~~~~~~l~V~~~p~  108 (113)
T 2edh_A           86 GEYLCMC----GK-ERTSAMLTVRAMPS  108 (113)
T ss_dssp             EEEEEEE----TT-EEEEEEEEECCCCC
T ss_pred             EEEEEEe----CC-CCEEEEEEEeCCCC
Confidence            9999998    44 36677788877664

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.62  E-value=4.3e-14  Score=77.12  Aligned_cols=96  Identities=31%  Similarity=0.492  Sum_probs=75.6

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.....++...........|.|.++.. .|.|.|.|.+
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~   81 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTD-DDATVYQVRA   81 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCG-GGCSEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCH-HhCEEEEEEE
Confidence            468888888888899999999999999988899999999998865445555543332334699999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEec
Q psy2442          89 ENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~  106 (111)
                      .|..|.. ...+.|.+..
T Consensus        82 ~n~~g~~-~~~~~l~V~~   98 (197)
T 2j8h_A           82 TNQGGSV-SGTASLEVEV   98 (197)
T ss_dssp             EETTEEE-EEEEEEEEEE
T ss_pred             EECCCce-eEEEEEEEcC
Confidence            9987653 5666666543

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.62  E-value=2.4e-13  Score=73.91  Aligned_cols=100  Identities=29%  Similarity=0.460  Sum_probs=77.8

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEE--CCeeccC--CCCceEEEeCCCCCeEEEEccCC-C
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK--NGKRVSG--TQSRYMVQEFPPGGSLLRIEPVR-H   77 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~--~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~-~   77 (111)
                      +.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++  ++..+..  ...++...... ....|.+.++. .
T Consensus        85 ~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~  163 (190)
T 2wv3_A           85 ATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKE-NYTELNIVNLQIT  163 (190)
T ss_dssp             EEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECS-SEEEEEECSCCTT
T ss_pred             EEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCC-CeeEEEEEecccc
Confidence            56788889998877777788999999999999999999999999  6766532  23455554322 33469999998 8


Q ss_pred             CCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          78 ARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        78 ~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                       .|.|.|.|.+.|..|.. ...+.|.|.
T Consensus       164 -~d~G~Y~C~a~N~~g~~-~~~~~l~V~  189 (190)
T 2wv3_A          164 -EDPGEYECNATNSIGSA-SVSTVLRVR  189 (190)
T ss_dssp             -TSCEEEEEEEECSSCEE-EEEEEEEEE
T ss_pred             -CCCEEEEEEEEecCCcc-eeEEEEEEE
Confidence             99999999999999874 666666553

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=3.6e-14  Score=70.40  Aligned_cols=93  Identities=23%  Similarity=0.337  Sum_probs=69.9

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      +|.+...+..+.+..|+.+.|.|. .+.+.+.+.|++++..+... .++.+.... ....|.|.++.. .|+|.|.|.  
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~-~~~~~~~~~-~~~~L~I~~v~~-~D~G~Y~C~--   81 (103)
T 2dku_A            8 ANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRAS-GKHQPSQEG-LTLRLTISALEK-ADSDTYTCD--   81 (103)
T ss_dssp             CCCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSS-SSEEEEEET-TEEEEEEESCCT-TTCSEEEEE--
T ss_pred             CCEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCC-CeEEEEeCC-CEEEEEECCCCc-ccCEEEEEE--
Confidence            556666667788999999999999 57788899999999887644 455554211 334599999998 999999998  


Q ss_pred             eCCCceEeeEEEEEEecCCCCC
Q psy2442          90 NGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                        .|.. .....|.|.+.|.+|
T Consensus        82 --~g~~-~~~~~l~V~~~p~~p  100 (103)
T 2dku_A           82 --IGQA-QSRAQLLVQGRRSGP  100 (103)
T ss_dssp             --CSSC-BCCEEEEEECSCCCC
T ss_pred             --eCCc-eEEEEEEEeCccCCC
Confidence              3443 556778888777665

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.61  E-value=1.5e-14  Score=78.62  Aligned_cols=100  Identities=30%  Similarity=0.433  Sum_probs=76.9

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      ..|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++...    ....|.+..+.. .|.|
T Consensus        93 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~-~~~~~~----~~~~L~i~~~~~-~d~G  166 (192)
T 2iep_A           93 GALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALREN-SRIAVL----ESGSLRIHNVQK-EDAG  166 (192)
T ss_dssp             EEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCC-SSEEEC----TTSCEEESSCCG-GGCE
T ss_pred             EEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCC-CcEEEe----cCCcEEEecCCh-hhCE
Confidence            3566777777777777778889999999999999999999999999987643 344332    233489999998 9999


Q ss_pred             EEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          83 VYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .|.|.+.|..|......+.|.|..+|
T Consensus       167 ~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          167 QYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            99999999988653456777776654

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.61  E-value=2.4e-14  Score=73.42  Aligned_cols=98  Identities=18%  Similarity=0.191  Sum_probs=69.5

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEecc---CCCeEEEEECCeec-c-CCCCceEEEeC-CC----CCeEEEEccCCCCCCC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGD---PIPVIQWRKNGKRV-S-GTQSRYMVQEF-PP----GGSLLRIEPVRHARDD   81 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~---~~~~~~w~~~~~~~-~-~~~~~~~~~~~-~~----~~~~l~~~~~~~~~d~   81 (111)
                      .+...+..+.+.+|+.++|.|.+.+.   |.|.+.|+++.... . ....++.+... +.    ....|.|.++.. .|+
T Consensus         9 ~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~Da   87 (126)
T 2dav_A            9 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD-NFA   87 (126)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCT-TSC
T ss_pred             EEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCc-ccC
Confidence            35556777889999999999998775   78899999964211 0 01123333210 00    124599999998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEec-CCCCC
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYE-GEEKP  111 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~-~~~~p  111 (111)
                      |.|.|.+.|..+. .++.+.|.|.. ++..|
T Consensus        88 G~Y~Cevsn~~g~-~~~~~~L~V~~~~~~~p  117 (126)
T 2dav_A           88 GNYRCEVTYKDKF-DSCSFDLEVHESTGTTP  117 (126)
T ss_dssp             EEEEEEEECSSCE-EEECCEEEEECCCCSCC
T ss_pred             EEEEEEEEeCCCc-EEEEEEEEEEecCCCCC
Confidence            9999999999876 48888999888 66544

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=1.1e-14  Score=71.84  Aligned_cols=85  Identities=20%  Similarity=0.408  Sum_probs=66.4

Q ss_pred             cCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      .+..+.+..|+.+.|.|.+.+.+ +.+.|++++..+... .++.+     ....|.|..+.. .|.|.|.|.+.|..|..
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~-~~~~~-----~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~~   80 (99)
T 2cr3_A            9 EVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAES-NRTRI-----TGEEVEVQDSVP-ADSGLYACVTSSPSGSD   80 (99)
T ss_dssp             CEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCC-SSEEE-----CSSEEEETTCCT-TTCEEEEEEEEETTEEE
T ss_pred             CCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCC-CcEEE-----ECCEEEEccCCH-HHCEEEEEEEEeCCceE
Confidence            34456788999999999998876 699999999877543 34443     234599999998 99999999999998874


Q ss_pred             EeeEEEEEEecCCC
Q psy2442          96 VSAEASLTVYEGEE  109 (111)
Q Consensus        96 ~~~~~~l~~~~~~~  109 (111)
                       ...+.+.|...+.
T Consensus        81 -~~~~~l~V~~~~~   93 (99)
T 2cr3_A           81 -TTYFSVNVSDALP   93 (99)
T ss_dssp             -EEEEEECBCSCCS
T ss_pred             -EEEEEEEEecCCC
Confidence             7777777766554

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.61  E-value=2.4e-14  Score=72.68  Aligned_cols=99  Identities=17%  Similarity=0.297  Sum_probs=69.2

Q ss_pred             eEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCC---CCCeEEEEccCCCCCC
Q psy2442           4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP---PGGSLLRIEPVRHARD   80 (111)
Q Consensus         4 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~d   80 (111)
                      +|.|..+|.+...... .  ......+.|.+.|.|.+.+.|+++|..+... .+.......   .....|.+.++.. .|
T Consensus         2 ~L~V~~pP~i~~~~~~-~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~~~~~~~~~~~~~~L~i~~~~~-~d   76 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEEP-E--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRES-KIIHVEYYQEGEISEGCLLFNKPTH-YN   76 (118)
T ss_dssp             --CCCCCCCCCCCCCC-C--CCCEEEEEEEEECSSCCEEEEEETTEECCCS-SSEEEEEEECSSEEEEEEEEESCCG-GG
T ss_pred             EEEEecCCceeccCCC-e--eccceEEEEEeeeeCCCeEEEEECCEECCCC-CceeEEEeccCccccEEEEECCCCh-hc
Confidence            5778888887544322 2  2356788899999999999999999988654 322221100   0134588999998 99


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          81 DAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      +|.|.|.+.|..|.. ...+.+.+...|
T Consensus        77 ~G~Y~C~a~N~~G~~-~~~~~l~v~~~P  103 (118)
T 1wwc_A           77 NGNYTLIAKNPLGTA-NQTINGHFLKEP  103 (118)
T ss_dssp             CEEEEEEEEETTEEE-EEEEEECCSCCC
T ss_pred             CEEEEEEEECCCCeE-eeEEEEEEccCC
Confidence            999999999999874 777777665554

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.61  E-value=9.1e-14  Score=76.85  Aligned_cols=96  Identities=31%  Similarity=0.458  Sum_probs=70.9

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCC--CCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGT--QSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      |.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+...  ..++...... ....|.|..+.. .|.|.|.|.+
T Consensus       109 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~-~d~G~Y~C~a  186 (212)
T 2yd6_A          109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSE-SIGALQIEQSEE-SDQGKYECVA  186 (212)
T ss_dssp             CEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEET-TEEEEEECSCCG-GGCEEEEEEE
T ss_pred             ceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecC-CeEEEEEcCCCc-ccCEEEEEEE
Confidence            56666666677888999999999999999999999999988543  2344333211 345699999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEecCC
Q psy2442          89 ENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .|..|...+....+.+...+
T Consensus       187 ~N~~G~~~s~~a~l~~~~~~  206 (212)
T 2yd6_A          187 TNSAGTRYSAPANLYVRGTK  206 (212)
T ss_dssp             EETTEEEECCCEEEEEEC--
T ss_pred             ECCCCccccccccEEEEecc
Confidence            99998765566667666544

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.61  E-value=4.4e-14  Score=67.82  Aligned_cols=80  Identities=24%  Similarity=0.377  Sum_probs=60.8

Q ss_pred             cceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442          18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS   97 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~   97 (111)
                      ..+.+.+|+.+.|.|.+.+ |.+.+.|+++|..+... .++.+.... ....|.|.++.. .|+|.|.|.+.|.     .
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~-~~~~~~~~~-~~~~L~I~~~~~-~D~G~Y~C~a~n~-----~   74 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQ-GRVQLEQAG-ARQVLRVQGARS-GDAGEYLCDAPQD-----S   74 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCC-SSEEEEECS-SCEEEEESSCSS-TTCEEEEEECTTT-----C
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEcccc-ccEEEeecC-CeEEEEecCCCC-cccEEEEEEECCE-----E
Confidence            3467889999999999866 77889999999998754 566555422 445699999998 9999999988553     3


Q ss_pred             eEEEEEEec
Q psy2442          98 AEASLTVYE  106 (111)
Q Consensus        98 ~~~~l~~~~  106 (111)
                      ....|.|.+
T Consensus        75 ~~a~l~V~e   83 (84)
T 2lu7_A           75 RIFLVSVEE   83 (84)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEEEC
Confidence            445566544

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.60  E-value=5.1e-13  Score=73.79  Aligned_cols=99  Identities=73%  Similarity=1.199  Sum_probs=76.9

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....++...........|.|.++....|.|.|.|.+
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~   84 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA   84 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence            57888888888889999999999999999989999999999886444566554332233568888887216899999999


Q ss_pred             eeCCCceEeeEEEEEEecC
Q psy2442          89 ENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~~  107 (111)
                      .|..|......+.|.|...
T Consensus        85 ~n~~g~~~~~~~~l~V~~~  103 (212)
T 2yd1_A           85 ENGVGDAVSADATLTIYEG  103 (212)
T ss_dssp             ECSSSCEEEEEEEEEEECT
T ss_pred             EeCCCCeEEeeEEEEEecc
Confidence            9988763366777777654

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.60  E-value=4.8e-14  Score=70.60  Aligned_cols=94  Identities=19%  Similarity=0.238  Sum_probs=66.9

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCC---CeEEEEECCeeccC--CCCceEEEe---CCC--CCeEEEEccCCCCC
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPI---PVIQWRKNGKRVSG--TQSRYMVQE---FPP--GGSLLRIEPVRHAR   79 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~---~~~~w~~~~~~~~~--~~~~~~~~~---~~~--~~~~l~~~~~~~~~   79 (111)
                      .|.+...+..+.+..|+.++|.|.+.+.|.   +.+.|++++.....  ...++....   ...  ....|.|.++.. .
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~   82 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP-A   82 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCG-G
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCC-c
Confidence            355566677788999999999999999887   89999997632211  112333221   000  124599999998 9


Q ss_pred             CCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          80 DDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        80 d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      |+|.|.|.+.|..|.. ...+.|.|.
T Consensus        83 D~G~Y~C~a~N~~G~~-~~~~~L~V~  107 (108)
T 3cx2_A           83 FTGSYRCEVSTKDKFD-CSNFNLTVH  107 (108)
T ss_dssp             GCEEEEEEEECSSCEE-EEEEEEEEE
T ss_pred             cCEEEEEEEecCCCce-EEEEEEEEe
Confidence            9999999999999874 777777764

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.60  E-value=1.2e-13  Score=68.25  Aligned_cols=92  Identities=24%  Similarity=0.374  Sum_probs=69.6

Q ss_pred             CCCeeEEcCcc-eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442           9 DPPEITLRPRN-QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus         9 ~~p~~~~~~~~-~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      .+|.+...+.. ..+..|+.+.|.|.+. .|.+.+.|++++..+... .++.+.... ....|.|.++.. .|+|.|.|.
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~-~~~~~~~~~-~~~~L~I~~~~~-~D~G~Y~C~   81 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPS-TKYIFEHKG-CQRILFINNCQM-TDDSEYYVT   81 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCB-TTEEEEEET-TEEEEEEEEECT-TTCCEEEEE
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCC-CCEEEEecC-CEEEEEEcCCCc-CcCEEEEEE
Confidence            36777766665 5778999999999998 688899999999887643 455554322 334599999998 999999999


Q ss_pred             eeeCCCceEeeEEEEEEecCCC
Q psy2442          88 AENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        88 ~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      +    |.. .....|.|.++|.
T Consensus        82 a----g~~-~~~~~l~V~~~P~   98 (100)
T 2yuv_A           82 A----GDE-KCSTELFVRSGPS   98 (100)
T ss_dssp             E----TTE-EEEEEEEECCSCC
T ss_pred             E----CCc-eEEEEEEEecCCC
Confidence            8    443 6677788877764

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.60  E-value=6e-14  Score=80.39  Aligned_cols=99  Identities=21%  Similarity=0.376  Sum_probs=78.0

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      +.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++...... ....|.+.++.. .|.|
T Consensus       185 ~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~-~~~~~~~~~-~~~~L~i~~v~~-~d~G  261 (284)
T 2rik_A          185 TSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG-KKYKIMSEN-FLTSIHILNVDS-ADIG  261 (284)
T ss_dssp             EEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBT-TTEEEEEET-TEEEEEECSCCG-GGCE
T ss_pred             EEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCC-CCEEEEEcC-CEEEEEEcCCCc-ccCE
Confidence            4677888888876676677889999999999999999999999999988654 444443322 334588999998 9999


Q ss_pred             EEEEEeeeCCCceEeeEEEEEEe
Q psy2442          83 VYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      .|.|.+.|..|.. ...+.|.|.
T Consensus       262 ~Y~C~a~N~~G~~-~~~~~l~V~  283 (284)
T 2rik_A          262 EYQCKASNDVGSY-TCVGSITLK  283 (284)
T ss_dssp             EEEEEEEETTEEE-EEEEEEEEC
T ss_pred             EEEEEEEeCCCce-eEEEEEEEc
Confidence            9999999999874 666666653

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.60  E-value=1.8e-13  Score=73.99  Aligned_cols=100  Identities=22%  Similarity=0.428  Sum_probs=76.3

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccC-CCeEEEEE---CCe-eccCC-CCceEEEeCCCCCeEEEEccCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRK---NGK-RVSGT-QSRYMVQEFPPGGSLLRIEPVR   76 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~---~~~-~~~~~-~~~~~~~~~~~~~~~l~~~~~~   76 (111)
                      +.|.|..+|.+...+....+..|+.+.|.|.+.+.| .+.+.|++   ++. .+... ..++...... ....|.|..+.
T Consensus        76 ~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~v~  154 (184)
T 3b5h_A           76 ANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ-GRSELHIENLN  154 (184)
T ss_dssp             EEEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEET-TEEEEEECSCC
T ss_pred             EEEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecC-CeeEEEEeecc
Confidence            567888889888777777788999999999999998 78999999   443 33322 2455554322 33569999998


Q ss_pred             -CCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          77 -HARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        77 -~~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                       . .|.|.|.|.+.|..|.. ...+.|.|.
T Consensus       155 ~~-~d~G~Y~C~a~N~~g~~-~~~~~l~V~  182 (184)
T 3b5h_A          155 ME-ADPGQYRCNGTSSKGSD-QAIITLRVR  182 (184)
T ss_dssp             TT-TSSEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             cc-ccCceEEEEEEeCCCcc-eEEEEEEEe
Confidence             8 99999999999999874 666777664

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.60  E-value=5.4e-14  Score=87.69  Aligned_cols=102  Identities=21%  Similarity=0.364  Sum_probs=81.4

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      +.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++.+.... ....|.|.++.. .|+|
T Consensus       377 ~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~-~~~~~~~~~-~~~~L~i~~v~~-~D~G  453 (570)
T 3b43_A          377 TSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG-KKYKIMSEN-FLTSIHILNVDS-ADIG  453 (570)
T ss_dssp             EEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSS-SSEEEEEET-TEEEEEECSCCG-GGCE
T ss_pred             EEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCC-CCEEEEEcC-CEEEEEECCCCh-hhCE
Confidence            5677888898877777777889999999999999999999999999988643 455444322 334588999998 9999


Q ss_pred             EEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          83 VYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .|.|.+.|..|.. .....|.+..+|
T Consensus       454 ~Y~C~A~N~~G~~-~~~~~l~v~~~P  478 (570)
T 3b43_A          454 EYQCKASNDVGSD-TCVGSITLKAPP  478 (570)
T ss_dssp             EEEEEEECSSCEE-EEEEEEEECCCC
T ss_pred             EEEEEEEECCCeE-EEEEEEEeccCC
Confidence            9999999999874 666777776554

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.59  E-value=2.8e-14  Score=72.34  Aligned_cols=97  Identities=37%  Similarity=0.544  Sum_probs=68.4

Q ss_pred             ecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCC--Cc-eEEEeCCCCCeEEEEc-----cCCCC
Q psy2442           7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ--SR-YMVQEFPPGGSLLRIE-----PVRHA   78 (111)
Q Consensus         7 v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~--~~-~~~~~~~~~~~~l~~~-----~~~~~   78 (111)
                      +..+|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+....  .+ ......  ... +.+.     ++.. 
T Consensus         6 ~~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~i~~~~v~~-   81 (117)
T 2v9t_A            6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP--SGS-LFFLRIVHGRKSR-   81 (117)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECT--TSC-EEESSCCCBTTBC-
T ss_pred             ccCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEec--CCc-EEEEEEEeCCCCc-
Confidence            3457788777888889999999999999999999999999998875331  11 111111  122 3333     4467 


Q ss_pred             CCCeEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          79 RDDAVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        79 ~d~g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      .|.|.|.|.+.|..|......+.+.+...
T Consensus        82 ~D~G~Y~C~a~N~~G~~~s~~~~l~~~~~  110 (117)
T 2v9t_A           82 PDEGVYVCVARNYLGEAVSHDASLEVAAA  110 (117)
T ss_dssp             SSCEEEEEEEEETTEEEECCCEEEEEC--
T ss_pred             CcCEEEEEEEEeCccceEeeeEEEEhhhh
Confidence            89999999999999876555666666543

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.59  E-value=3.1e-16  Score=80.20  Aligned_cols=102  Identities=24%  Similarity=0.363  Sum_probs=78.1

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCe-EEEEECCeeccCC-CCceEEEeC-CCC--CeEEEEccCCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGT-QSRYMVQEF-PPG--GSLLRIEPVRH   77 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~-~~~~~~~~~-~~~--~~~l~~~~~~~   77 (111)
                      ++|.|..+|.+.. +....+..|+.+.|.|.+.+.|.|. +.|++++..+... ..++..... ...  ...|.|.++..
T Consensus         7 ~~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   85 (122)
T 2cry_A            7 GTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR   85 (122)
T ss_dssp             CCCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCH
T ss_pred             EEEEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCCh
Confidence            5678889999887 6777888999999999999999986 9999998877542 245544211 001  33589999998


Q ss_pred             CCCC-eEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          78 ARDD-AVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        78 ~~d~-g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                       .|. |.|.|.+.|..|.. ...+.|.+.++
T Consensus        86 -~D~~G~Y~C~a~N~~G~~-~~~~~l~V~~~  114 (122)
T 2cry_A           86 -ADFQTIYNCTAWNSFGSD-TEIIRLKEQGS  114 (122)
T ss_dssp             -HHHHSCEEEEEECSSCEE-EEEECCCCSCS
T ss_pred             -hhCCceEEEEEECCCCeE-EEEEEEEECCC
Confidence             898 99999999999975 67777666543

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=9.7e-15  Score=71.66  Aligned_cols=85  Identities=25%  Similarity=0.498  Sum_probs=64.9

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      ++.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+...           ....|.|.++.. .|+|.|.|.+.
T Consensus        10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~-----------~~~~L~i~~v~~-~d~G~Y~C~a~   77 (96)
T 2ens_A           10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP-----------PSPVLILPEIGP-QDQGTYSCVAT   77 (96)
T ss_dssp             SCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSC-----------CCSEEEEESCCT-TTCEEEECEEC
T ss_pred             CCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCC-----------CCCEEEECCCCc-ccCEEEEEEEE
Confidence            456666676778899999999999999888899999988876532           223488899998 99999999999


Q ss_pred             eCCC-ceEeeEEEEEEec
Q psy2442          90 NGVG-DAVSAEASLTVYE  106 (111)
Q Consensus        90 ~~~~-~~~~~~~~l~~~~  106 (111)
                      |..+ ...+..+.|.|.+
T Consensus        78 n~~~~~~~s~~~~v~V~~   95 (96)
T 2ens_A           78 HSSHGPQESRAVSISIIE   95 (96)
T ss_dssp             CSSCCCEECCCEEEEECC
T ss_pred             eCCCCcEEEEEEEEEEeC
Confidence            9644 3234455665543

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.58  E-value=7.8e-15  Score=72.40  Aligned_cols=82  Identities=35%  Similarity=0.573  Sum_probs=62.7

Q ss_pred             cceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCC--ceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442          18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS--RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      ..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.....  .+....   ....|.|.++.. .|+|.|.|.+.|..|..
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~~   91 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN---QHWSLIMESVVP-SDKGNYTCVVENEYGSI   91 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEG---GGTEEEECSCCG-GGCEEEEEEEEETTEEE
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEec---CeEEEEEccCCc-CCCEEEEEEEEeCCCEE
Confidence            346678899999999999999999999999988753211  122221   234599999998 99999999999998864


Q ss_pred             EeeEEEEEE
Q psy2442          96 VSAEASLTV  104 (111)
Q Consensus        96 ~~~~~~l~~  104 (111)
                       ...+.|.|
T Consensus        92 -~~~~~l~V   99 (100)
T 3caf_A           92 -NHTYHLDV   99 (100)
T ss_dssp             -EEEEEEEE
T ss_pred             -EEEEEEEE
Confidence             66666654

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1.4e-14  Score=72.18  Aligned_cols=92  Identities=23%  Similarity=0.286  Sum_probs=69.1

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      +.+...+....+..|+++.|.|.+.+.+.+ .+.|+++|..+... .++.+.... ....|.|.++.. .|+|.|.|.+.
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~-~r~~~~~~~-~~~~L~I~~v~~-~D~G~Y~C~a~   85 (104)
T 2eny_A            9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSS-SRFQATRQG-RKYILVVREAAP-SDAGEVVFSVR   85 (104)
T ss_dssp             CCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBC-SSCEEEEET-TEEEEEECSCCT-TTCSCEEEEET
T ss_pred             CEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCC-CCEEEEEcC-CEEEEEECCCCH-HHCEEEEEEEC
Confidence            455666777889999999999999887644 79999999888644 455554321 334699999998 99999999875


Q ss_pred             eCCCceEeeEEEEEEecCCCC
Q psy2442          90 NGVGDAVSAEASLTVYEGEEK  110 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~~~~~~~  110 (111)
                      |    . .....|.|.++|..
T Consensus        86 ~----~-~~~a~L~V~~~p~~  101 (104)
T 2eny_A           86 G----L-TSKASLIVRERSGP  101 (104)
T ss_dssp             T----E-EEEECEEEECCCSS
T ss_pred             C----e-eEEEEEEEeCCCcC
Confidence            4    2 55667777777654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.58  E-value=3.3e-14  Score=84.94  Aligned_cols=99  Identities=34%  Similarity=0.563  Sum_probs=79.6

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      +.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++...    ....|.+..+.. .|.|
T Consensus       305 ~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~~----~~~~L~i~~v~~-~d~G  378 (403)
T 3laf_A          305 AELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPS-DYFQIV----GGSNLRILGVVK-SDEG  378 (403)
T ss_dssp             EEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCS-SSEEEE----TTTEEEESSCCG-GGCE
T ss_pred             EEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCC-CcEEEe----cCccEEEecccc-ccCE
Confidence            4567777888877777778889999999999999999999999999987543 344433    345599999998 9999


Q ss_pred             EEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          83 VYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .|.|.+.|..|.. ...+.|.|.++|
T Consensus       379 ~Y~C~a~N~~G~~-~~~~~l~V~~P~  403 (403)
T 3laf_A          379 FYQCVAENEAGNA-QSSAQLIVPKPA  403 (403)
T ss_dssp             EEEEEEEETTEEE-EEEEEEECCCC-
T ss_pred             EEEEEEEcCCceE-EEEEEEEEeCCC
Confidence            9999999999875 777777776653

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.58  E-value=3.9e-14  Score=84.57  Aligned_cols=95  Identities=28%  Similarity=0.439  Sum_probs=77.6

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      ++|.|..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|+++|..+... .++...     ...|.|..+.. .|+|
T Consensus       288 ~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~~~-----~~~L~i~~v~~-~D~G  360 (384)
T 3kld_A          288 GQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTR-DRIQIE-----QGTLNITIVNL-SDAG  360 (384)
T ss_dssp             EEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCB-TTEEEE-----TTEEEESSCCG-GGCE
T ss_pred             EEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCC-ccEEEe-----CCEEEEeecCh-hhCE
Confidence            4677888888877777788889999999999999999999999999988543 455442     23599999998 9999


Q ss_pred             EEEEEeeeCCCceEeeEEEEEEe
Q psy2442          83 VYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      .|.|.+.|..|.. .....|.|.
T Consensus       361 ~Y~C~A~N~~G~~-~~~a~L~V~  382 (384)
T 3kld_A          361 MYQCVAENKHGVI-FSSAELSVI  382 (384)
T ss_dssp             EEEEEEEETTEEE-EEEEEEEEC
T ss_pred             EEEEEEEeCCceE-EeceEEEEe
Confidence            9999999999874 666666654

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.58  E-value=6.8e-14  Score=71.71  Aligned_cols=83  Identities=22%  Similarity=0.244  Sum_probs=64.1

Q ss_pred             cCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEE-eC---C--CCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442          24 AGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ-EF---P--PGGSLLRIEPVRHARDDAVYECVAENGVGDAVS   97 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~---~--~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~   97 (111)
                      .+..+.|.|.+.|.|.|.+.|+++|..+... .+.... ..   .  .....|.|..+.. .|+|.|.|.+.|..|.. .
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~YtC~A~N~~G~~-~   90 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNET-SFIFTEFLEPAANETVRHGCLRLNQPTH-VNNGNYTLLAANPFGQA-S   90 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCC-SSEEEEEECCCSSCCCEEEEEEEESCCG-GGCEEEEEEEEETTEEE-E
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCC-CceeEEEeeccccccccceEEEECcCCC-CCCEEEEEEEEECCCeE-E
Confidence            5678999999999999999999999998754 332221 11   0  0124589999998 99999999999999975 7


Q ss_pred             eEEEEEEecCCC
Q psy2442          98 AEASLTVYEGEE  109 (111)
Q Consensus        98 ~~~~l~~~~~~~  109 (111)
                      ..+.+.+...|.
T Consensus        91 ~t~~l~v~~~P~  102 (126)
T 1he7_A           91 ASIMAAFMDNPF  102 (126)
T ss_dssp             EEEEECCCSCTT
T ss_pred             EEEEEEEEcCCC
Confidence            777787776654

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=3e-13  Score=68.08  Aligned_cols=95  Identities=21%  Similarity=0.261  Sum_probs=68.7

Q ss_pred             EecCCCeeEEcCcc---eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442           6 RFLDPPEITLRPRN---QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus         6 ~v~~~p~~~~~~~~---~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      .|..+|.+...+..   +.+..|+.+.|.|.+. .+.+.+.|++++..+... .++...... ....|.|.++.. .|.|
T Consensus         6 ~v~~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~-~~~~~~~~~-~~~~L~I~~v~~-~D~G   81 (113)
T 2cpc_A            6 SGTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVES-PALLLQKED-TVRRLVLPAVQL-EDSG   81 (113)
T ss_dssp             CCCSCSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCB-TTBEEEECS-SEEEEEESSCCT-TTCE
T ss_pred             ccccCCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccC-CCEEEEECC-CEEEEEECCCCc-ccCE
Confidence            34556655544443   5677899999999985 677899999999988643 455544311 235699999998 9999


Q ss_pred             EEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          83 VYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      .|.|.+.|    . ...+.|.|.++|.
T Consensus        82 ~Y~C~a~n----~-~~~~~l~V~~~p~  103 (113)
T 2cpc_A           82 EYLCEIDD----E-SASFTVTVTEPPV  103 (113)
T ss_dssp             EEEEESSS----C-EEEEEEEEECCCC
T ss_pred             EEEEEEec----C-cEEEEEEEecCCc
Confidence            99999988    2 4566677776653

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.58  E-value=1.3e-13  Score=82.05  Aligned_cols=106  Identities=18%  Similarity=0.281  Sum_probs=80.3

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCC-CceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ-SRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      +.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.... .++...... ....|.+.++.. .|.
T Consensus        93 ~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~-~~~~L~i~~~~~-~d~  170 (389)
T 2jll_A           93 MYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTG-RKMILEIAPTSD-NDF  170 (389)
T ss_dssp             EEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECS-SCEEEEECCCST-TSS
T ss_pred             EEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccC-CEEEEEECCCCh-hhC
Confidence            56777777877655544467889999999999999999999999999886432 244443322 445699999998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEecCCCCC
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      |.|.|.+.|..|.. ...+.+.+...|..|
T Consensus       171 G~Y~C~a~N~~G~~-~~~~~l~v~~~P~~P  199 (389)
T 2jll_A          171 GRYNCTATNHIGTR-FQEYILALADVPSSP  199 (389)
T ss_dssp             EEEEEEEEETTEEE-EEEEEEEECCCCCCC
T ss_pred             EEEEEEEEcCCCcE-EEEEEEEecCCCCCC
Confidence            99999999998874 666666666666554

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.58  E-value=1.2e-13  Score=86.09  Aligned_cols=100  Identities=14%  Similarity=0.242  Sum_probs=79.9

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      +.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....++.+.... ....|.|..+.. .|+|
T Consensus       470 ~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~-~d~G  547 (570)
T 3b43_A          470 GSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSE-NIATLQFSRAEP-ANAG  547 (570)
T ss_dssp             EEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEECCCS-SEEEEEESSCCT-TCCE
T ss_pred             EEEEeccCCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEEECC-CEEEEEECcCCH-HHCE
Confidence            56788899999888877888899999999999999999999999987664433454443211 335699999998 9999


Q ss_pred             EEEEEeeeCCCceEeeEEEEEEe
Q psy2442          83 VYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      .|.|.+.|..|.. .....|.|.
T Consensus       548 ~Y~C~a~N~~G~~-~~~a~L~V~  569 (570)
T 3b43_A          548 KYTCQIKNEAGTQ-ECFATLSVL  569 (570)
T ss_dssp             EEEEEEECSSCEE-EEEEEECCB
T ss_pred             EEEEEEEECCcEE-EEEEEEEEe
Confidence            9999999999975 777766553

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.58  E-value=5e-14  Score=68.94  Aligned_cols=84  Identities=25%  Similarity=0.485  Sum_probs=64.9

Q ss_pred             cCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      .+....+..|+.+.|.|.+.+  .+.+.|++++..+... .++...     ...|.|.++.. .|+|.|.|.+.|..|..
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~-~~~~~~-----~~~L~i~~~~~-~D~G~Y~C~a~n~~g~~   77 (95)
T 4hwu_A            7 QPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPN-NRTVLI-----GEYLQIKGATP-RDSGLYACTAARTVDSE   77 (95)
T ss_dssp             -CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCC-SSEEEE-----TTEEEECSCCG-GGCEEEEEEEECSSCEE
T ss_pred             CCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCC-ceEEEe-----CCEEEECcCCc-ccCEEEEEEEccCCCcE
Confidence            455567889999999999876  4699999999888643 454442     23599999998 99999999999998864


Q ss_pred             EeeEEEEEEecCCC
Q psy2442          96 VSAEASLTVYEGEE  109 (111)
Q Consensus        96 ~~~~~~l~~~~~~~  109 (111)
                       ...+.+.|.+++.
T Consensus        78 -~~~~~l~V~~~~~   90 (95)
T 4hwu_A           78 -TWIFMVNVTDAAE   90 (95)
T ss_dssp             -EEEEEEEECCC--
T ss_pred             -EEEEEEEEeCCcc
Confidence             7788888776653

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.58  E-value=1.3e-13  Score=79.74  Aligned_cols=96  Identities=31%  Similarity=0.492  Sum_probs=76.0

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.....++......+....|.|.++.. .|.|.|.|.+
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a   81 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTD-DDATVYQVRA   81 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCG-GGCSEEEEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCCh-hhCeEEEEEE
Confidence            478888888888999999999999999999999999999998865444555443232334699999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEec
Q psy2442          89 ENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~  106 (111)
                      .|..|.. .....|.|..
T Consensus        82 ~n~~g~~-~~~~~l~V~~   98 (305)
T 2nzi_A           82 TNQGGSV-SGTASLEVEV   98 (305)
T ss_dssp             EETTEEE-EEEEEEEECE
T ss_pred             EcCCCCc-cceEEEEEec
Confidence            9987763 6666666643

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.58  E-value=2.5e-13  Score=74.82  Aligned_cols=89  Identities=22%  Similarity=0.385  Sum_probs=70.9

Q ss_pred             cCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      .+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++.....++....|.+.++.. .|.|.|.|.+.|..|..
T Consensus       123 ~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~g~~  200 (212)
T 2r15_A          123 LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQT-DHCNLKFEAGRTAYFTINGVST-ADSGKYGLVVKNKYGSE  200 (212)
T ss_dssp             CCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCC-SSEEEEEETTTEEEEEESSCCG-GGCEEEEEEEEETTEEE
T ss_pred             CCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccC-CCEEEEEcCCCEEEEEEcCcch-HHCeEEEEEEEcCCCcE
Confidence            344567889999999999999999999999999988654 4555544322345699999998 99999999999999874


Q ss_pred             EeeEEEEEEecC
Q psy2442          96 VSAEASLTVYEG  107 (111)
Q Consensus        96 ~~~~~~l~~~~~  107 (111)
                       ...+.|.|..+
T Consensus       201 -~~~~~l~V~~P  211 (212)
T 2r15_A          201 -TSDFTVSVFIP  211 (212)
T ss_dssp             -EEEEEEEEECC
T ss_pred             -EEEEEEEEEcc
Confidence             77777877654

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.57  E-value=6.4e-14  Score=69.87  Aligned_cols=80  Identities=24%  Similarity=0.321  Sum_probs=64.1

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+..+.+..|+.+.|.|.+.+.+.+ +.|++++..+... .++.+.... ....|.|.++.. .|+|.|.|.+
T Consensus         7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~-~~~~~~~~~-~~~~L~I~~v~~-~D~G~Y~C~a   82 (106)
T 2dlt_A            7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPS-KRITISHVG-RFHKLVIDDVRP-EDEGDYTFVP   82 (106)
T ss_dssp             CCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCC-SSCEEEEET-TEEEEEESSCCT-TTCSCEEEEE
T ss_pred             CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCC-CCEEEEEeC-CEEEEEECCCCc-CCCEEEEEEE
Confidence            46777777888899999999999999988776 9999999887644 455554311 335699999998 9999999999


Q ss_pred             eeCC
Q psy2442          89 ENGV   92 (111)
Q Consensus        89 ~~~~   92 (111)
                      .|..
T Consensus        83 ~n~~   86 (106)
T 2dlt_A           83 DGYA   86 (106)
T ss_dssp             ETSC
T ss_pred             ccCC
Confidence            9973

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.57  E-value=3.7e-14  Score=72.65  Aligned_cols=91  Identities=15%  Similarity=0.273  Sum_probs=66.2

Q ss_pred             cCcceeeecCCcEEEEEEEeccCCCeEEEEECCeecc-------CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS-------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+..+.+..|++++|.|...+.+.+.+.|++.+..+.       ....++...........|.|.++.. .|+|.|.|.+
T Consensus         7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~a   85 (124)
T 3rbg_A            7 HTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTL-QDEGVYKCLH   85 (124)
T ss_dssp             SEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCG-GGCEEEEEEE
T ss_pred             CCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCCh-HHCEEEEEEE
Confidence            3455788899999999999998889999997654321       1224444432111335699999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEecCCC
Q psy2442          89 ENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      .|. +. ......|.|..+|.
T Consensus        86 ~n~-g~-~~~~~~l~V~~~P~  104 (124)
T 3rbg_A           86 YSD-SV-STKEVKVIVLATMK  104 (124)
T ss_dssp             ESS-SE-EEEEEEEEEECC--
T ss_pred             EcC-CC-CcEEEEEEEEeCCC
Confidence            998 65 47788888887764

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.57  E-value=2.3e-13  Score=75.21  Aligned_cols=96  Identities=45%  Similarity=0.779  Sum_probs=72.8

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccC-CCCCCCeEEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPV-RHARDDAVYEC   86 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~d~g~y~c   86 (111)
                      ..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+...... ...........|.|.++ .. .|.|.|.|
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~-~d~G~Y~C   81 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFE-VIEFDDGSGSVLRIQPLRTP-RDEAIYEC   81 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEE-EEEEGGGTEEEEEECSCCTT-TTCEEEEE
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCcee-EEEEcCCCceEEEEeccCCC-CCCeEEEE
Confidence            45678888888888999999999999999999999999999988643211 22111113455899998 47 99999999


Q ss_pred             EeeeCCCceEeeEEEEEEec
Q psy2442          87 VAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        87 ~~~~~~~~~~~~~~~l~~~~  106 (111)
                      .+.|..|.. ...+.|.|..
T Consensus        82 ~a~n~~g~~-~~~~~l~V~~  100 (212)
T 2yd6_A           82 VASNNVGEI-SVSTRLTVLR  100 (212)
T ss_dssp             EEEETTEEE-EEEEEEEEEC
T ss_pred             EEEcCCCcE-EEEEEEEEec
Confidence            999988763 6666776654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.56  E-value=5.2e-13  Score=76.52  Aligned_cols=97  Identities=26%  Similarity=0.433  Sum_probs=76.6

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      ..+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+... .++...... ....|.|.++.. .|.|.|.|.
T Consensus         3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~-~~~~~~~~~-~~~~L~i~~v~~-~d~G~Y~C~   79 (284)
T 2rik_A            3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG-GNYKMTLVE-NTATLTVLKVTK-GDAGQYTCY   79 (284)
T ss_dssp             CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSS-SSEEEEEET-TEEEEEESSCCG-GGCEEEEEE
T ss_pred             cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCC-CcEEEEEcC-CEEEEEEecCCc-ccCEEEEEE
Confidence            46788888888888999999999999999888899999999988643 344333211 345699999998 999999999


Q ss_pred             eeeCCCceEeeEEEEEEecCC
Q psy2442          88 AENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        88 ~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      +.|..|.. .....|.+..+|
T Consensus        80 ~~n~~g~~-~~~~~l~V~~~p   99 (284)
T 2rik_A           80 ASNVAGKD-SCSAQLGVQEPP   99 (284)
T ss_dssp             EEETTEEE-EEEEEEEEECCC
T ss_pred             EEECCceE-EEEEEEEccCCC
Confidence            99987763 667777776554

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.56  E-value=5.2e-14  Score=81.82  Aligned_cols=95  Identities=24%  Similarity=0.392  Sum_probs=71.5

Q ss_pred             eEEecCCCeeEEc-CcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           4 KVRFLDPPEITLR-PRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         4 ~l~v~~~p~~~~~-~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      .|.|..+|.+... .....+..|+.+.|.|.+.+.|.| .+.|++++..+...   ...     ....|.|.++.. .|+
T Consensus       210 ~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~---~~~-----~~~~L~i~~v~~-~d~  280 (313)
T 4fqp_A          210 NLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF---AVA-----QGAQLLIRPVDK-PIN  280 (313)
T ss_dssp             ECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT---EEE-----ETTEEEECCCSS-CCE
T ss_pred             ecccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCc---eEE-----eCCEEEECcCCh-hhC
Confidence            4455566766433 333455678899999999999988 69999999877532   111     234589999998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      |.|.|.+.|..|.. ...+.|.|.++|
T Consensus       281 G~Y~C~a~N~~G~~-~~~~~l~V~~~P  306 (313)
T 4fqp_A          281 TTLICNVTNALGAR-QAELTVQVKEGP  306 (313)
T ss_dssp             EEEEEEEECSSCEE-EEEEEEEEECCC
T ss_pred             EEEEEEEEeCCCcE-EEEEEEEEEeCC
Confidence            99999999999975 788888887654

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=1.4e-14  Score=71.66  Aligned_cols=91  Identities=24%  Similarity=0.340  Sum_probs=67.3

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCC---ceEEEeCCCCCeEEEEccCCCCCCCeEEEE
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS---RYMVQEFPPGGSLLRIEPVRHARDDAVYEC   86 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c   86 (111)
                      +|.+...+....+..|+.+.|.|.+.+.+ +.+.|++++..+.....   ++.+.... ....|.|.++.. .|+|.|.|
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~-~~~~L~I~~~~~-~D~G~Y~C   84 (101)
T 2edk_A            8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDG-KRHILIFSDVVQ-EDRGRYQV   84 (101)
T ss_dssp             CCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECS-SEEEEECSSCCG-GGCSBEEE
T ss_pred             CCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECC-CEEEEEECCCCh-hhCEEEEE
Confidence            56666777778899999999999999888 89999999988764321   45554321 334589999998 99999999


Q ss_pred             EeeeCCCceEeeEEEEEEecCC
Q psy2442          87 VAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        87 ~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .+.|.     .....|.|.++|
T Consensus        85 ~a~n~-----~~~~~l~V~~~P  101 (101)
T 2edk_A           85 ITNGG-----QCEAELIVEEKQ  101 (101)
T ss_dssp             ECSSC-----EECCBEEEECCC
T ss_pred             EEcCC-----cEEEEEEEeCCC
Confidence            99872     233445555543

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.56  E-value=1e-13  Score=72.74  Aligned_cols=93  Identities=20%  Similarity=0.310  Sum_probs=68.5

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEE---------CCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEE
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK---------NGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y   84 (111)
                      ...+..+.+..|++++|.|...+.+.+.+.|++         ++..+.  ..++...........|.|.++.. .|+|.|
T Consensus        42 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~--~~r~~~~~~~~~~~~L~I~~v~~-~DsG~Y  118 (145)
T 1z9m_A           42 QPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALR--DNRIQLVTSTPHELSISISNVAL-ADEGEY  118 (145)
T ss_dssp             CCBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSC--CTTEEEEEECSSEEEEEECSCCG-GGCEEE
T ss_pred             ecCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecc--cCCEEEecCCCCeEEEEECCCCh-hhCEEE
Confidence            345566788999999999999888888999994         322222  24555432222345699999998 999999


Q ss_pred             EEEeeeCCCceEeeEEEEEEecCCCCC
Q psy2442          85 ECVAENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        85 ~c~~~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      .|.+.|. +. ......|.|..+|.+|
T Consensus       119 ~C~~~n~-~~-~~~~~~L~V~~~P~~P  143 (145)
T 1z9m_A          119 TCSIFTM-PV-RTAKSLVTVLGIPQKP  143 (145)
T ss_dssp             EEEECSS-SC-EEEEEEEEEECCCC--
T ss_pred             EEEEEcC-CC-ceEEEEEEEEeCCCCC
Confidence            9999998 76 4788889998888766

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.56  E-value=4.5e-14  Score=76.74  Aligned_cols=94  Identities=33%  Similarity=0.555  Sum_probs=71.7

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      ..+|.+...+..+.+..|+.+.|.|...+.+.+.+.|++++..+.....++....   ....|.+.++.. .|.|.|.|.
T Consensus         5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~-~d~G~Y~C~   80 (192)
T 2iep_A            5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRE---NGQLLTILSVED-SDDGIYCCT   80 (192)
T ss_dssp             CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEG---GGTEEEESSCCG-GGCEEEEEE
T ss_pred             CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcC---CccEEEEcCCCc-ccCeEEEEE
Confidence            3456666666677889999999999999988889999999998865445665543   334589999998 999999999


Q ss_pred             eeeCCCceEeeEEEEEEe
Q psy2442          88 AENGVGDAVSAEASLTVY  105 (111)
Q Consensus        88 ~~~~~~~~~~~~~~l~~~  105 (111)
                      +.|..|........+.+.
T Consensus        81 ~~~~~~~~~~~~~~l~v~   98 (192)
T 2iep_A           81 ANNGVGGAVESCGALQVK   98 (192)
T ss_dssp             EECSSSCCEEEEEEEEEE
T ss_pred             EEcCCCceeEeEEEEEEE
Confidence            999876533444444443

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.56  E-value=8e-14  Score=83.22  Aligned_cols=98  Identities=26%  Similarity=0.400  Sum_probs=76.7

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      +.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+...........   ....|.+.++.. .|.|
T Consensus       305 ~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~---~~~~L~i~~v~~-~d~G  380 (404)
T 3p3y_A          305 ISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREV---AGDTIIFRDTQI-SSRA  380 (404)
T ss_dssp             EEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEE---ETTEEEESSCCS-SCCC
T ss_pred             EEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEe---cCCEEEEeecCH-HHCE
Confidence            456777788887777778888999999999999999999999999998864321111111   223599999998 9999


Q ss_pred             EEEEEeeeCCCceEeeEEEEEEe
Q psy2442          83 VYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      .|.|.+.|..|.. ...+.|.|.
T Consensus       381 ~Y~C~a~N~~G~~-~~~~~l~V~  402 (404)
T 3p3y_A          381 VYQCNTSNEHGYL-LANAFVSVL  402 (404)
T ss_dssp             EEEEEEEETTEEE-EEEEEEEEC
T ss_pred             EEEEEEEeCCCcE-EEEEEEEEE
Confidence            9999999999874 677777664

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.56  E-value=2.3e-13  Score=73.99  Aligned_cols=97  Identities=23%  Similarity=0.372  Sum_probs=72.8

Q ss_pred             eEEec---CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           4 KVRFL---DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         4 ~l~v~---~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .|.|.   .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++...... ....|.+..+.. .|
T Consensus        94 ~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~-~~~~~~~~~-~~~~L~i~~~~~-~d  170 (194)
T 2a38_A           94 ELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSS-LDFQISQEG-DLYSLLIAEAYP-ED  170 (194)
T ss_dssp             EEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCS-SSEEEEEET-TEEEEEEEEECG-GG
T ss_pred             EEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCC-CcEEEEEcC-CEEEEEECCCCh-hc
Confidence            45555   3555555666677889999999999999999999999999988643 444443211 333588999998 99


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEEE
Q psy2442          81 DAVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      .|.|.|.+.|..|.. ...+.|.|
T Consensus       171 ~G~Y~C~a~n~~g~~-~~~~~l~V  193 (194)
T 2a38_A          171 SGTYSVNATNSVGRA-TSTAELLV  193 (194)
T ss_dssp             CEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             CeEEEEEEEeCCCce-EEEEEEEE
Confidence            999999999998864 66666654

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.56  E-value=3.8e-13  Score=67.22  Aligned_cols=96  Identities=24%  Similarity=0.453  Sum_probs=68.4

Q ss_pred             ecCCCeeEEcCcceeeecCCcEEEEEEEecc--CCCeEEEEECCeeccCCCCceEEEeCCCC-------CeEEEEccCCC
Q psy2442           7 FLDPPEITLRPRNQAVKAGGITSFYCIARGD--PIPVIQWRKNGKRVSGTQSRYMVQEFPPG-------GSLLRIEPVRH   77 (111)
Q Consensus         7 v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~   77 (111)
                      ...+|.+...+....+..|+.++|.|.+.+.  +.+.+.|++++..+..... .........       ...|.|.++..
T Consensus         7 ~~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~I~~v~~   85 (112)
T 3so5_A            7 DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEM-ENYAHLRAQGGELMEYTTILRLRNVEF   85 (112)
T ss_dssp             -CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEE-EEEEETTGGGSSCEEEEEEEEECSCCG
T ss_pred             CCCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccc-cceeeeeccCCCccccceEEEEecccc
Confidence            3467888888888889999999999999854  4568999999988754211 000010001       24599999998


Q ss_pred             CCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442          78 ARDDAVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        78 ~~d~g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                       .|.|.|.|.+.|..|...+....|.|
T Consensus        86 -~D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           86 -TSEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             -GGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             -ccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence             99999999999988763345555554

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.56  E-value=6.9e-14  Score=68.09  Aligned_cols=78  Identities=15%  Similarity=0.260  Sum_probs=57.6

Q ss_pred             CCeeEEcCcce--eeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442          10 PPEITLRPRNQ--AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus        10 ~p~~~~~~~~~--~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      |+.+..+....  .+..|+.+.|.|.+.+ |.+.+.|+++|..+... .++.+.... ....|.|.++.. .|+|.|.|.
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~-~~~~i~~~~-~~~~L~I~~v~~-~D~G~Y~C~   79 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEES-DFVVLENEG-PHRRLVLPATQP-SDGGEFQCV   79 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCC-SSCEEEEET-TEEEEEESSCCG-GGCSEEEEE
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeee-eeeeEEecC-CeEEEEeCCCCh-hhcEEEEEE
Confidence            45554444443  4457999999999866 77789999999988654 555554322 334599999998 999999999


Q ss_pred             eeeC
Q psy2442          88 AENG   91 (111)
Q Consensus        88 ~~~~   91 (111)
                      +.|.
T Consensus        80 a~n~   83 (91)
T 2lvc_A           80 AGDE   83 (91)
T ss_dssp             CSSC
T ss_pred             Ecce
Confidence            8664

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.56  E-value=2.4e-13  Score=74.02  Aligned_cols=95  Identities=24%  Similarity=0.479  Sum_probs=73.2

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      ..+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+... .++...... ....|.|.++.. .|.|.|.|.
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~-~~~~L~i~~~~~-~d~G~Y~C~   81 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQS-RKYKMSSDG-RTHTLTVMTEEQ-EDEGVYTCI   81 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCC-SSEEEEESS-SEEEEEEECCSG-GGCEEEEEE
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCC-ccEEEEeCC-CEEEEEEecCCc-cCCEEEEEE
Confidence            45677777788888999999999999999888899999999887543 455444321 333599999998 999999999


Q ss_pred             eeeCCCceEeeEEEEEEec
Q psy2442          88 AENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        88 ~~~~~~~~~~~~~~l~~~~  106 (111)
                      +.|..+.. .....+.+..
T Consensus        82 ~~n~~~~~-~~~~~l~v~~   99 (197)
T 3lcy_A           82 ATNEVGEV-ETSSKLLLQA   99 (197)
T ss_dssp             EECSSCEE-EEEEEEEEEE
T ss_pred             EECCCCce-eEEEEEEEEc
Confidence            99887763 5555555543

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.55  E-value=4.6e-13  Score=69.61  Aligned_cols=87  Identities=25%  Similarity=0.406  Sum_probs=64.4

Q ss_pred             ecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCC---------CCceEEEe--CCCCCeEEEEccC
Q psy2442           7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGT---------QSRYMVQE--FPPGGSLLRIEPV   75 (111)
Q Consensus         7 v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~---------~~~~~~~~--~~~~~~~l~~~~~   75 (111)
                      ...+|.+...+..+.+..|+++.|.|.+.+.|.+.+.|++++..+...         ..++....  .......|.|.++
T Consensus        18 ~~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v   97 (137)
T 3qr2_A           18 GSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL   97 (137)
T ss_dssp             ---CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSC
T ss_pred             CCCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCC
Confidence            456889988888889999999999999999999999999976654321         11222211  0112345999999


Q ss_pred             CCCCCCeEEEEEeeeCCCc
Q psy2442          76 RHARDDAVYECVAENGVGD   94 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~~~~   94 (111)
                      .. .|.|.|.|.+.|..|.
T Consensus        98 ~~-~D~G~Y~C~a~N~~G~  115 (137)
T 3qr2_A           98 VE-EDTGTYECRASNDPDR  115 (137)
T ss_dssp             CG-GGCEEEEEEEECCTTS
T ss_pred             Cc-ccCEEEEEEEEecCCc
Confidence            98 9999999999998875

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.55  E-value=1.8e-13  Score=75.24  Aligned_cols=98  Identities=23%  Similarity=0.404  Sum_probs=71.6

Q ss_pred             eEEecCC---CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           4 KVRFLDP---PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         4 ~l~v~~~---p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .|.|..+   |.+......  +..|+.+.|.|.+.+.+ +.+.|++++..+... .++....   ....|.+..+.. .|
T Consensus       103 ~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~-~~~~~~~---~~~~L~i~~v~~-~d  174 (208)
T 3r4d_A          103 RFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLT-ERMTLSQ---NNSILRIDPIKR-ED  174 (208)
T ss_dssp             EEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCC-SSEEEET---TTTEEEESSCCG-GG
T ss_pred             EEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCC-CCeEEcC---CCCEEEEeccCH-Hh
Confidence            4556544   444443333  77899999999998865 799999999988643 4554443   335699999998 99


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          81 DAVYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      .|.|.|.+.|..|...+..+.|.+..++.
T Consensus       175 ~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~  203 (208)
T 3r4d_A          175 AGEYQCEISNPVSVRRSNSIKLDIIFDPH  203 (208)
T ss_dssp             CEEEEEEEECTTCCEECCCEEECCC----
T ss_pred             CeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence            99999999999998767788887776654

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.55  E-value=1.3e-13  Score=68.36  Aligned_cols=92  Identities=21%  Similarity=0.381  Sum_probs=67.9

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+..+.+..|+++.|.|.+.+.+.+ +.|++++..+... .++.+.... ....|.|.++.. .|+|.|.|.+
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~-~~~~~~~~~-~~~~L~I~~v~~-~D~G~Y~C~~   82 (103)
T 2e7b_A            7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPG-DKYSLRQEG-AMLELVVRNLRP-QDSGRYSCSF   82 (103)
T ss_dssp             CCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCS-SSEEEEECS-SEEEEEECSCCT-TTCCCEEEEC
T ss_pred             CCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCC-CcEEEEEcC-CEEEEEEccCCc-ccCEEEEEEE
Confidence            35666666777889999999999999998888 9999998887543 455555322 334599999998 9999999983


Q ss_pred             eeCCCceEeeEEEEEEecCCC
Q psy2442          89 ENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~~~~  109 (111)
                          |.. .....|.|..+|.
T Consensus        83 ----g~~-~~~~~l~V~~~p~   98 (103)
T 2e7b_A           83 ----GDQ-TTSATLTVTALPS   98 (103)
T ss_dssp             ----SSC-BCCBCEEEECCCC
T ss_pred             ----CCc-EEEEEEEEEeccc
Confidence                332 4455666666653

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.54  E-value=3.6e-13  Score=73.12  Aligned_cols=87  Identities=21%  Similarity=0.386  Sum_probs=70.0

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCC-CCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGT-QSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      +.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... ..++...    ....|.+..+.. .|.
T Consensus        93 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~-~d~  167 (191)
T 1epf_A           93 VNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL----SNNYLQIRGIKK-TDE  167 (191)
T ss_dssp             EEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC----TTSCEEETTCCG-GGC
T ss_pred             EEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEe----cCCeEEECCCCh-hhC
Confidence            4567788888887777778889999999999999999999999999987532 2344333    233499999998 999


Q ss_pred             eEEEEEeeeCCCc
Q psy2442          82 AVYECVAENGVGD   94 (111)
Q Consensus        82 g~y~c~~~~~~~~   94 (111)
                      |.|.|.+.|..+.
T Consensus       168 G~Y~C~a~n~~~~  180 (191)
T 1epf_A          168 GTYRCEGRILARG  180 (191)
T ss_dssp             EEEEEEEEEGGGT
T ss_pred             EEEEEEEEEecce
Confidence            9999999998754

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.54  E-value=1.8e-13  Score=74.69  Aligned_cols=98  Identities=23%  Similarity=0.299  Sum_probs=71.8

Q ss_pred             eEEecCCCeeEEc-----CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEcc-CCC
Q psy2442           4 KVRFLDPPEITLR-----PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEP-VRH   77 (111)
Q Consensus         4 ~l~v~~~p~~~~~-----~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~   77 (111)
                      .|.|..+|.+...     +....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++...... ....|.+.. +..
T Consensus        93 ~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~-~~~~L~i~~~~~~  170 (197)
T 2j8h_A           93 SLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-GHYQVIVTR-SFTSLVFPNGVER  170 (197)
T ss_dssp             EEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSS-SSCEEEECS-SEEEEECTTCCCG
T ss_pred             EEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecC-CCEEEEEcC-CceEEEEeCCCCc
Confidence            4555555444322     13356778999999999999999999999999887643 455544322 345588888 888


Q ss_pred             CCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          78 ARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        78 ~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                       .|.|.|.|.+.|..|.. ...+.|.|.
T Consensus       171 -~d~G~Y~C~a~N~~g~~-~~~~~l~V~  196 (197)
T 2j8h_A          171 -KDAGFYVVCAKNRFGID-QKTVELDVA  196 (197)
T ss_dssp             -GGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             -ccCEeEEEEEEeCCCcE-eEEEEEEEe
Confidence             99999999999999874 777777664

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.54  E-value=4e-13  Score=65.71  Aligned_cols=86  Identities=21%  Similarity=0.375  Sum_probs=63.4

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      +.+...+..+.+..|+.+.|.|.+ +.+.+.+.|++++..+... .++.+.... ....|.|.++.. .|.|.|.|.+  
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~-~~~~~~~~~-~~~~L~I~~v~~-~D~G~Y~C~a--   82 (95)
T 2k1m_A            9 SAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISAS-NKYGLATEG-TRHTLTVREVGP-ADQGSYAVIA--   82 (95)
T ss_dssp             CCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSS-TTCEEEEET-TEEEEEESSCCT-TCCSEEEEEE--
T ss_pred             CeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCC-CcEEEEEcC-CEEEEEEcCCCc-ccCEEEEEEE--
Confidence            455556677889999999999999 7777899999999887643 455444311 334599999998 9999999998  


Q ss_pred             CCCceEeeEEEEEEe
Q psy2442          91 GVGDAVSAEASLTVY  105 (111)
Q Consensus        91 ~~~~~~~~~~~l~~~  105 (111)
                        |.. .....|.|.
T Consensus        83 --g~~-~~~~~l~V~   94 (95)
T 2k1m_A           83 --GSS-KVKFDLKVI   94 (95)
T ss_dssp             --TTE-EEEEEEEEE
T ss_pred             --CCc-eEEEEEEEe
Confidence              332 445556553

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.54  E-value=2.7e-13  Score=80.57  Aligned_cols=95  Identities=28%  Similarity=0.522  Sum_probs=77.2

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      +.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++...     ...|.|.++.. .|.|
T Consensus       287 ~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~~-----~~~L~i~~v~~-~d~G  359 (382)
T 1cs6_A          287 GRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ-NRIEVS-----GGELRFSKLVL-EDSG  359 (382)
T ss_dssp             EEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCC-SSEEEE-----TTEEEESSCCG-GGCE
T ss_pred             EEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCC-ceEEEE-----CCEEEECcCCc-ccCE
Confidence            4567777888877777778889999999999999999999999999988644 455442     23599999998 9999


Q ss_pred             EEEEEeeeCCCceEeeEEEEEEe
Q psy2442          83 VYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      .|.|.+.|..|.. ...+.|.|.
T Consensus       360 ~Y~C~a~N~~G~~-~~~~~l~V~  381 (382)
T 1cs6_A          360 MYQCVAENKHGTV-YASAELTVQ  381 (382)
T ss_dssp             EEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EEEEEEEeCCCeE-EEEEEEEEe
Confidence            9999999999875 667777664

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.54  E-value=2.4e-13  Score=73.94  Aligned_cols=94  Identities=26%  Similarity=0.408  Sum_probs=71.2

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCC-CceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ-SRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      .+|.+...+....+..|+.+.|.|.+.+.+.+.+.|++++..+.... .++...... ....|.|.++.. .|.|.|.|.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~-~d~G~Y~C~   81 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD-GRAKLTIPAVTK-ANSGRYSLK   81 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEET-TEEEEEESSCCG-GGCEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCC-CEEEEEECCCCc-ccCEEEEEE
Confidence            35677777777889999999999999998988999999988875432 233332222 345699999998 999999999


Q ss_pred             eeeCCCceEeeEEEEEEe
Q psy2442          88 AENGVGDAVSAEASLTVY  105 (111)
Q Consensus        88 ~~~~~~~~~~~~~~l~~~  105 (111)
                      +.|..+.. .....+.+.
T Consensus        82 ~~n~~~~~-~~~~~l~v~   98 (194)
T 2a38_A           82 ATNGSGQA-TSTAELLVK   98 (194)
T ss_dssp             EEETTEEE-EEEEEEEEE
T ss_pred             EEcCCceE-eEEEEEEEc
Confidence            99987653 555555554

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.53  E-value=1.8e-13  Score=78.59  Aligned_cols=99  Identities=28%  Similarity=0.549  Sum_probs=72.8

Q ss_pred             eEEecCCCeeEEcCc--ceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           4 KVRFLDPPEITLRPR--NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         4 ~l~v~~~p~~~~~~~--~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      .+.|..+|.+.....  ...+..|+.+.|.|.+.+.|.+.+.|++++..+... .++....   ....|.|..+.. .|.
T Consensus       186 ~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~~~---~~~~L~i~~~~~-~d~  260 (291)
T 2wim_A          186 IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-EKYILKG---SNTELTVRNIIN-SDG  260 (291)
T ss_dssp             EEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCT-TTEEECS---TTCEEEEESCCS-TTC
T ss_pred             EEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCC-ccEEEcC---CccEEEEeeCCc-ccC
Confidence            455666666654333  345678999999999999999999999999988643 3444332   345699999998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      |.|.|.+.|..|.. ...+.+.+..++
T Consensus       261 G~Y~C~a~N~~G~~-~~~~~l~v~~~~  286 (291)
T 2wim_A          261 GPYVCRATNKAGED-EKQAFLQVFVQH  286 (291)
T ss_dssp             EEEEEEEEETTEEE-EEEEEEEC----
T ss_pred             EEEEEEEEECCCce-eeeEEEEEEEec
Confidence            99999999999875 777777766544

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.53  E-value=2.8e-13  Score=80.59  Aligned_cols=88  Identities=32%  Similarity=0.593  Sum_probs=71.9

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      +.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|+++|..+..            ....|.|..+.. .|.|
T Consensus       300 ~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~------------~~~~L~i~~v~~-~d~G  366 (388)
T 2v5m_A          300 TVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH------------SESVLRIESVKK-EDKG  366 (388)
T ss_dssp             EEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSC------------CSSEEEESSCCG-GGCE
T ss_pred             EEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECcc------------CCCEEEEecCCh-hhCE
Confidence            456777777776667777888999999999999999999999999988753            233488999998 9999


Q ss_pred             EEEEEeeeCCCceEeeEEEEEE
Q psy2442          83 VYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      .|.|.+.|..|.. ...+.|.|
T Consensus       367 ~Y~C~a~N~~G~~-~~~~~l~V  387 (388)
T 2v5m_A          367 MYQCFVRNDRESA-EASAELKL  387 (388)
T ss_dssp             EEEEEEECSSCEE-EEEEEEEE
T ss_pred             EEEEEEEcCCCcE-EEEEEEEe
Confidence            9999999999874 66666654

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.53  E-value=7.2e-13  Score=76.60  Aligned_cols=105  Identities=23%  Similarity=0.305  Sum_probs=77.0

Q ss_pred             eeEEecCCCeeEEc-----CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEcc-CC
Q psy2442           3 RKVRFLDPPEITLR-----PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEP-VR   76 (111)
Q Consensus         3 ~~l~v~~~p~~~~~-----~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~   76 (111)
                      +.|.|..+|.+...     +....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++...... ....|.+.+ +.
T Consensus        92 ~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~  169 (305)
T 2nzi_A           92 ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-GHYQVIVTR-SFTSLVFPNGVE  169 (305)
T ss_dssp             EEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSS-SSCEEEECS-SEEEEEETTCCC
T ss_pred             EEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCC-CcEEEEEcC-CceEEEEecCCc
Confidence            34556555544322     23456778999999999999999999999998877543 444443322 335588888 88


Q ss_pred             CCCCCeEEEEEeeeCCCceEeeEEEEEEecCCCCC
Q psy2442          77 HARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      . .|.|.|.|.+.|..|.. ...+.+.+...|.+|
T Consensus       170 ~-~d~G~Y~C~a~N~~G~~-~~~~~l~v~~~P~~p  202 (305)
T 2nzi_A          170 R-KDAGFYVVCAKNRFGID-QKTVELDVADVPDPP  202 (305)
T ss_dssp             S-TTCEEEEEEEEETTEEE-EEEEEEEEEBCCCCC
T ss_pred             c-CccEEEEEEEEeCCCce-eeEEEEEEecCCCCC
Confidence            8 99999999999999874 777888888777654

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.53  E-value=4.4e-13  Score=76.99  Aligned_cols=98  Identities=30%  Similarity=0.563  Sum_probs=73.5

Q ss_pred             eEEecCCCeeEEcCc--ceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCC---CceEEEeCCCCCeEEEEccCCCC
Q psy2442           4 KVRFLDPPEITLRPR--NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ---SRYMVQEFPPGGSLLRIEPVRHA   78 (111)
Q Consensus         4 ~l~v~~~p~~~~~~~--~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~   78 (111)
                      .|.|..+|.+.....  ...+..|+.+.|.|.+.+.|.+.+.|++++..+....   .++....   ....|.|.++.. 
T Consensus       188 ~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~-  263 (291)
T 1qz1_A          188 QVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD---DSSELTIRNVDK-  263 (291)
T ss_dssp             EEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECT---TSCEEEECSCCG-
T ss_pred             EEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcC---CCcEEEEEecCh-
Confidence            455566666654432  3456789999999999999999999999999886432   2333322   345699999998 


Q ss_pred             CCCeEEEEEeeeCCCceEeeEEEEEEec
Q psy2442          79 RDDAVYECVAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        79 ~d~g~y~c~~~~~~~~~~~~~~~l~~~~  106 (111)
                      .|.|.|.|.+.|..|.. ...+.|.|..
T Consensus       264 ~d~G~Y~C~a~N~~G~~-~~~~~l~V~~  290 (291)
T 1qz1_A          264 NDEAEYVCIAENKAGEQ-DASIHLKVFA  290 (291)
T ss_dssp             GGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             hcCEEEEEEEEeCCCce-EEEEEEEEEc
Confidence            99999999999999874 7777777754

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.53  E-value=4.3e-13  Score=72.60  Aligned_cols=95  Identities=29%  Similarity=0.588  Sum_probs=70.4

Q ss_pred             EEecCCCeeEEcCc--ceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442           5 VRFLDPPEITLRPR--NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus         5 l~v~~~p~~~~~~~--~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      +.|..+|.+.....  ...+..|+.+.|.|.+.+.|.+.+.|++++..+... .++....   ....|.+..+.. .|.|
T Consensus        91 l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~---~~~~L~i~~~~~-~d~G  165 (189)
T 2v5t_A           91 VIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-EKYILKG---SNTELTVRNIIN-SDGG  165 (189)
T ss_dssp             EEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCS-SSEEEET---TTTEEEECSCCG-GGCE
T ss_pred             EEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCC-CcEEEec---CCCEEEEcCCCh-hhCe
Confidence            44555555543333  345667999999999999999999999999987643 3444432   345599999998 9999


Q ss_pred             EEEEEeeeCCCceEeeEEEEEEe
Q psy2442          83 VYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      .|.|.+.|..|.. ...+.|.|.
T Consensus       166 ~Y~C~a~n~~g~~-~~~~~l~V~  187 (189)
T 2v5t_A          166 PYVCRATNKAGED-EKQAFLQVF  187 (189)
T ss_dssp             EEEEEEEETTEEE-EEEEEEEEE
T ss_pred             eEEEEEEeCCCce-eEEEEEEEE
Confidence            9999999998864 666666654

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.52  E-value=6.9e-14  Score=77.28  Aligned_cols=91  Identities=13%  Similarity=0.172  Sum_probs=63.2

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccC---CCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSG---TQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.|.|..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+..   ...++... .++....+.+..+.. .
T Consensus        99 ~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~-~~g~l~il~i~~v~~-~  176 (203)
T 4fa8_A           99 EHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE-KDGSLSVAVDLSLPK-P  176 (203)
T ss_dssp             EEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEEC-TTSCEEEEEEEEECS-S
T ss_pred             EEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEe-CCCCEEEEEECCCCH-H
Confidence            467777777777667777788999999999999999999999887654421   12333332 121223355567887 9


Q ss_pred             CCeEEEEEeeeCCCce
Q psy2442          80 DDAVYECVAENGVGDA   95 (111)
Q Consensus        80 d~g~y~c~~~~~~~~~   95 (111)
                      |+|.|.|.+.|..|..
T Consensus       177 D~G~YtC~A~N~~G~a  192 (203)
T 4fa8_A          177 WHLPVTCVGKNDKEEA  192 (203)
T ss_dssp             CCCCEEEEEESSSCEE
T ss_pred             HCEEEEEEEEcCCCEE
Confidence            9999999999999875

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.52  E-value=8.4e-13  Score=73.33  Aligned_cols=84  Identities=25%  Similarity=0.400  Sum_probs=67.6

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      |.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+...           ....|.|..+.. .|.|.|.|.+.|
T Consensus       119 p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~-----------~~~~L~i~~v~~-~d~G~Y~C~a~n  186 (218)
T 3k0w_A          119 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----------TKKLYMVPYVDL-EHQGTYWCHVYN  186 (218)
T ss_dssp             CEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC-----------CSSEEEESSCCG-GGCEEEEEEEEC
T ss_pred             ceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC-----------CCCEEEEeecCh-hcCEEEEEEEEc
Confidence            56666666778889999999999999999999999999887543           223488899998 999999999999


Q ss_pred             CCCceEeeEEEEEEec
Q psy2442          91 GVGDAVSAEASLTVYE  106 (111)
Q Consensus        91 ~~~~~~~~~~~l~~~~  106 (111)
                      ..|...+..+.|.|.+
T Consensus       187 ~~g~~~s~~~~l~V~~  202 (218)
T 3k0w_A          187 DRDSQDSKKVEIIIDE  202 (218)
T ss_dssp             SSCEEECCCEEEEECC
T ss_pred             CCCCceeeeEEEEEeC
Confidence            8876446666666654

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.52  E-value=1e-12  Score=71.31  Aligned_cols=97  Identities=24%  Similarity=0.395  Sum_probs=72.3

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccC-CCeEEEEE-CCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRK-NGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      +.+...+....+..|+.+.|.|...+.+ .+.+.|++ ++..+.....++...........|.|.++.. .|.|.|.|.+
T Consensus         3 ~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~   81 (191)
T 1epf_A            3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANI-DDAGIYKCVV   81 (191)
T ss_dssp             CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCG-GGCEEEEEEE
T ss_pred             eEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCc-ccCEEEEEEE
Confidence            4455667777899999999999998876 67999999 7777754445555543222446699999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEecCC
Q psy2442          89 ENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .+..+......+.+.+..+|
T Consensus        82 ~~~~~~~~~~~~~l~v~~~p  101 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIFQKL  101 (191)
T ss_dssp             EETTTEEEEEEEEEEEECCS
T ss_pred             EcCCCcceEEEEEEEeecCc
Confidence            99875434666677665543

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.52  E-value=1.8e-13  Score=75.34  Aligned_cols=100  Identities=30%  Similarity=0.505  Sum_probs=71.9

Q ss_pred             eEEecC-CCeeEEcCcceeeecCCcEEEEEEE-eccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           4 KVRFLD-PPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         4 ~l~v~~-~p~~~~~~~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      .|.|.. ++.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+.....++...     ...|.+..+.. .|.
T Consensus       104 ~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~-----~~~L~i~~~~~-~d~  177 (212)
T 2v9r_A          104 SLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR-----GGKLMITYTRK-SDA  177 (212)
T ss_dssp             EEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEE-----TTEEEESSCCG-GGC
T ss_pred             EEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEcc-----CCeEEEeeCCH-hhC
Confidence            444443 2333344455678899999999998 888999999999999886543444432     23589999998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      |.|.|.+.|..|......+.|.|.++|.
T Consensus       178 G~Y~C~a~N~~g~~~s~~~~l~V~~~P~  205 (212)
T 2v9r_A          178 GKYVCVGTNMVGERESEVAELTVLERPS  205 (212)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             eeEEEEEecccCceecceEEEEEEeCch
Confidence            9999999999886433347788877664

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.52  E-value=4.2e-13  Score=79.97  Aligned_cols=93  Identities=32%  Similarity=0.504  Sum_probs=75.6

Q ss_pred             eeEEecCCCeeEEcCcc-eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           3 RKVRFLDPPEITLRPRN-QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~-~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      +.|.|..+|.+...+.. ..+..|+.+.|.|.+.+.|.+.+.|++++..+..  .++...    . ..|.|.++.. .|.
T Consensus       301 ~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~--~~~~~~----~-~~L~i~~~~~-~d~  372 (395)
T 1bih_A          301 LKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG--GRATVT----D-SGLVIKGVKN-GDK  372 (395)
T ss_dssp             EEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCS--SSEEEE----T-TEEEESSCCS-TTC
T ss_pred             EEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCC--CceEEE----C-CEEEEeeCCc-ccC
Confidence            46778888888777766 6788999999999999999999999999998764  355443    2 2599999998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEE
Q psy2442          82 AVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      |.|.|.+.|..|.. ...+.|.|
T Consensus       373 G~Y~C~a~N~~G~~-~~~~~l~V  394 (395)
T 1bih_A          373 GYYGCRATNEHGDK-YFETLVQV  394 (395)
T ss_dssp             EEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEEEEEEccCCCc-eEEEEEEE
Confidence            99999999999874 66666654

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.51  E-value=1.1e-12  Score=71.49  Aligned_cols=98  Identities=19%  Similarity=0.223  Sum_probs=72.1

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEe-ccCCCeEEEEECCeeccCCCC-ceEEEeCCCC------CeEEEEccCCCCCCC
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQS-RYMVQEFPPG------GSLLRIEPVRHARDD   81 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~------~~~l~~~~~~~~~d~   81 (111)
                      +|.+...+....+..|+.+.|.|.+. +.|.+.+.|++++..+..... ++........      ...|.|.++.. .|.
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~   80 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQL-SDT   80 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCS-TTC
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccc-cCC
Confidence            57778888888999999999999998 888889999999998864321 2333221101      24599999998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      |.|.|.+.|..+......+.|.+..+|
T Consensus        81 G~Y~C~~~~~~~~~~~~~~~l~V~~~p  107 (195)
T 2c5d_C           81 GQYQCLVFLGHQTFVSQPGYVGLEGLP  107 (195)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEECCSC
T ss_pred             cEEEEEEEeCCCceecccEEEEEecCC
Confidence            999999999766432334666665544

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=2.6e-13  Score=68.87  Aligned_cols=94  Identities=18%  Similarity=0.166  Sum_probs=67.4

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEecc---CCCeEEEEECCee-cc-CCCCceEEEeC-CC----CCeEEEEccCCCCCCC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGD---PIPVIQWRKNGKR-VS-GTQSRYMVQEF-PP----GGSLLRIEPVRHARDD   81 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~---~~~~~~w~~~~~~-~~-~~~~~~~~~~~-~~----~~~~l~~~~~~~~~d~   81 (111)
                      .+...+..+.+..|+.++|.|.+.+.   |.|.+.|+++... +. ....++.+... +.    ....|.|.++.. .|+
T Consensus        14 ~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~   92 (118)
T 2edn_A           14 VFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVL-GDR   92 (118)
T ss_dssp             SCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCT-TTC
T ss_pred             eEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCCh-hhC
Confidence            34455777889999999999999875   6789999996421 11 11123333210 10    124599999998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      |.|.|.+.|..|. .++.+.|.|.++
T Consensus        93 G~Y~Cevsn~~g~-~s~~~~L~V~~~  117 (118)
T 2edn_A           93 GYYRLEVKAKDTC-DSCGFNIDVEAP  117 (118)
T ss_dssp             SCEEEEEECSSCE-EEEEECCEEECC
T ss_pred             EEEEEEEEEcCCc-EEEEEEEEEEcC
Confidence            9999999999986 488888888764

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.51  E-value=1.9e-13  Score=75.66  Aligned_cols=86  Identities=17%  Similarity=0.241  Sum_probs=65.3

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEecc-CCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      +|.+.... ...+..|+.+.|.|.+.+. |.|.+.|++++..+... .++...   .....|.|.++.. .|.|.|.|.+
T Consensus       117 ~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~-~~~~~~---~~~~~L~I~~v~~-~D~G~Y~C~a  190 (207)
T 3rbs_A          117 GPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD-EKHDFK---DGICTLLITEFSK-KDAGIYEVIL  190 (207)
T ss_dssp             SSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCC-CCCCCS---SEEEEEEETTCCG-GGCEEEEEEE
T ss_pred             CCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCC-CceEcC---CCEEEEEECCCCc-ccCEEEEEEE
Confidence            56665444 3678899999999999998 89999999999988643 232111   1223599999998 9999999999


Q ss_pred             eeCCCceEeeEEEE
Q psy2442          89 ENGVGDAVSAEASL  102 (111)
Q Consensus        89 ~~~~~~~~~~~~~l  102 (111)
                      .|..|.. .....|
T Consensus       191 ~N~~G~~-~~~~~L  203 (207)
T 3rbs_A          191 KDDRGKD-KSRLKL  203 (207)
T ss_dssp             EETTEEE-EEEEEE
T ss_pred             EcCCCEE-EEEEEE
Confidence            9999874 555554

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.51  E-value=3.9e-13  Score=72.52  Aligned_cols=96  Identities=24%  Similarity=0.309  Sum_probs=68.0

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCC-CCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP-PGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      +.+...+..+.+..|+.+.|.|...+.+.+.+.|++++..+... .+....... .....|.+.++.. .|.|.|.|.+.
T Consensus         3 ~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~   80 (182)
T 1rhf_A            3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL-DQLYIPVSEQHWIGFLSLKSVER-SDAGRYWCQVE   80 (182)
T ss_dssp             ----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSS-EEEEEEEETTEEEEEEEESSCCG-GGCEEEEEEES
T ss_pred             CEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCC-CceEEEecCCCceEEEEEeecCc-ccCeEEEEEEE
Confidence            44555666678899999999999999888899999999887643 233222111 0124588999998 99999999999


Q ss_pred             eCCCceEeeEEEEEEecCC
Q psy2442          90 NGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~~~~~  108 (111)
                      |..+......+.|.+..+|
T Consensus        81 ~~~~~~~~~~~~l~V~~~p   99 (182)
T 1rhf_A           81 DGGETEISQPVWLTVEGVP   99 (182)
T ss_dssp             SCTTCEECCCEEEEEECSC
T ss_pred             cCCCcEEEEEEEEEEecCC
Confidence            9866533456667666544

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.51  E-value=5.9e-14  Score=77.26  Aligned_cols=99  Identities=15%  Similarity=0.196  Sum_probs=69.8

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEE-eccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      +.|.|..+|.+........+..|+.+.|.|.+ .+.|.+.+.|++.+........... ..   ....|.+.++.. .|.
T Consensus       114 ~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~-~~---~~~~L~i~~~~~-~d~  188 (214)
T 3jz7_A          114 FLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA-EM---TSPVISVKNASS-EYS  188 (214)
T ss_dssp             EEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGGG-GT---TSSEEEECSCCG-GGC
T ss_pred             EEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCcccee-cc---CCCEEEEecCCH-HHC
Confidence            46777777766544444457789999999999 8889999999995432211101110 00   234599999998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      |.|.|.+.|..|.. ...+.|.|..+
T Consensus       189 G~Y~C~a~N~~g~~-~~~~~l~V~~P  213 (214)
T 3jz7_A          189 GTYSCTVQNRVGSD-QCMLRLDVVPP  213 (214)
T ss_dssp             EEEEEEEECSSCEE-EEEEEECCBCC
T ss_pred             EEEEEEEEcCCCcE-EEEEEEEEeCC
Confidence            99999999999875 77777776644

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.50  E-value=2.9e-13  Score=74.74  Aligned_cols=97  Identities=16%  Similarity=0.175  Sum_probs=68.9

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEecc-CCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      +.|.|..++.+...+. ..+..|+.+.|.|.+.+. +.+.+.|++++..+...       .   ....|.|.++.. .|.
T Consensus        82 ~~l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~-------~---~~~~L~i~~v~~-~D~  149 (204)
T 3sgj_C           82 VQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF-------H---HNSDFYIPKATL-KDS  149 (204)
T ss_dssp             EEEEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-------E---ECCCEEESSCCG-GGC
T ss_pred             EEEEEecCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc-------c---CCceEEECcCCc-ccC
Confidence            4677777777665555 577899999999999665 45689999998875321       0   223488999998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEecCCCCC
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      |.|.|.+.|..+...+..+.|.|.+++..|
T Consensus       150 G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~P  179 (204)
T 3sgj_C          150 GSYFCRGLVGSKNVSSETVQITITQGLAVS  179 (204)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEEC-----
T ss_pred             EEEEEEEEeCCCceecCcEEEEEeCcCCCC
Confidence            999999999544434667788887766543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.50  E-value=2.6e-12  Score=73.82  Aligned_cols=102  Identities=19%  Similarity=0.279  Sum_probs=71.5

Q ss_pred             EEecC--CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeC---CCCCeEEEEccCCCCC
Q psy2442           5 VRFLD--PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEF---PPGGSLLRIEPVRHAR   79 (111)
Q Consensus         5 l~v~~--~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~   79 (111)
                      |.|..  +|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++...............   ......|.|..+.. .
T Consensus       174 l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~  252 (289)
T 3mjg_X          174 VYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAEL-E  252 (289)
T ss_dssp             EEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCS-S
T ss_pred             EEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccCh-h
Confidence            44443  566655555567889999999999999999999999876654321111111100   00224599999998 9


Q ss_pred             CCeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          80 DDAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        80 d~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      |.|.|.|.+.|..|.. .....|.+.+.+
T Consensus       253 D~G~Y~C~a~N~~G~~-~~~~~l~v~~~~  280 (289)
T 3mjg_X          253 DSGTYTCNVTESVNDH-QDEKAINITVVE  280 (289)
T ss_dssp             CCEEEEEEEEETTTTE-EEEEEEEEEEEC
T ss_pred             hCcEEEEEeecCCCCc-eeEEEEEEEEEe
Confidence            9999999999999985 777777776554

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=3.8e-12  Score=64.09  Aligned_cols=92  Identities=21%  Similarity=0.260  Sum_probs=69.0

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCC--C-------ceEEEeCCCCCeEEEEccCCCCCC
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ--S-------RYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~--~-------~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      ++.+...+++..+..|+.+.|.|.+.+  .+.+.|+++|..+....  .       ++.+.. ++....|.|.++.. .|
T Consensus         8 ~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~-~g~~~~L~I~~v~~-~D   83 (112)
T 2e6q_A            8 TARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQ-KGLQHRLILHAVKH-QD   83 (112)
T ss_dssp             CCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECC-BTTEEEEEEESCCS-TT
T ss_pred             CcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEe-CCcEEEEEECCCCH-HH
Confidence            456777888899999999999999987  66899999999997542  1       555542 21234599999998 99


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          81 DAVYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      +|.|.|...+.    ......|.|.++|.
T Consensus        84 ~G~Y~~~~~~~----~~ssA~L~V~~~p~  108 (112)
T 2e6q_A           84 SGALVGFSCPG----VQDSAALTIQESSG  108 (112)
T ss_dssp             CSEEEEEEETT----EEEEEEEEEECSSC
T ss_pred             CccEEEEEECC----eeEEEEEEEeCCCc
Confidence            99998765442    24566777877764

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.49  E-value=1.3e-12  Score=75.77  Aligned_cols=88  Identities=22%  Similarity=0.394  Sum_probs=70.1

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceE
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAV   96 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~   96 (111)
                      +....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++.+...++....|.+.++.. .|.|.|.|.+.|..|.. 
T Consensus       229 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~g~~-  305 (317)
T 2y25_A          229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASD-DHCNLKFEAGRTAYFTINGVST-ADSGKYGLVVKNKYGSE-  305 (317)
T ss_dssp             CSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCC-SSEEECCBTTTEEEEEEBSCCS-TTCEEEEEEEEETTEEE-
T ss_pred             CccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCC-CcEEEEEcCCCEEEEEECCCCH-HHCEEEEEEEEeCCCeE-
Confidence            44567889999999999999999999999999888643 4555543222334699999998 99999999999999875 


Q ss_pred             eeEEEEEEecC
Q psy2442          97 SAEASLTVYEG  107 (111)
Q Consensus        97 ~~~~~l~~~~~  107 (111)
                      ...+.|.|..+
T Consensus       306 ~~~~~l~V~~P  316 (317)
T 2y25_A          306 TSDFTVSVFIP  316 (317)
T ss_dssp             EEEEEEEEECC
T ss_pred             EEEEEEEEEcC
Confidence            77888887654

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.49  E-value=1.1e-12  Score=65.31  Aligned_cols=79  Identities=22%  Similarity=0.365  Sum_probs=58.9

Q ss_pred             CCCeeEEcCcc-eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442           9 DPPEITLRPRN-QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus         9 ~~p~~~~~~~~-~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      .+|.+...... +.+..|+.+.|.|.+ +.+.+.+.|++++..+.....++.+.... ....|.|.++.. .|+|.|.|.
T Consensus        14 ~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~-~~~~L~I~~v~~-~D~G~Y~C~   90 (104)
T 1pd6_A           14 KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIG-AKRTLTISQCSL-ADDAAYQCV   90 (104)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEET-TEEEEEECSCSS-SSCEEEEEE
T ss_pred             CCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecC-CEEEEEECCCCc-ccCEEEEEE
Confidence            34555544444 678899999999999 67778899999999886542455554311 234699999998 999999999


Q ss_pred             eee
Q psy2442          88 AEN   90 (111)
Q Consensus        88 ~~~   90 (111)
                      +.+
T Consensus        91 a~~   93 (104)
T 1pd6_A           91 VGG   93 (104)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            844

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.49  E-value=2.4e-12  Score=73.93  Aligned_cols=98  Identities=23%  Similarity=0.385  Sum_probs=72.4

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccC-CCeEEEEE-CCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRK-NGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      ++.+...+....+..|+.+.|.|.+.+.+ .+.+.|++ +|..+.....++...........|.|.++.. .|.|.|.|.
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~   80 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANI-DDAGIYKCV   80 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCG-GGCEEEEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCC-CCCEEEEEE
Confidence            45566677777899999999999998876 57999998 6766654445554433222345699999998 999999999


Q ss_pred             eeeCCCceEeeEEEEEEecCC
Q psy2442          88 AENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        88 ~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      +.|..|......+.+.+..+|
T Consensus        81 ~~n~~g~~~~~~~~l~v~~~~  101 (291)
T 1qz1_A           81 VTAEDGTQSEATVNVKIFQKL  101 (291)
T ss_dssp             EECTTSCEEEEEEEEEEECCS
T ss_pred             EEcCCCCeeEEEEEEEeeccc
Confidence            999876544566667665443

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.49  E-value=8.6e-13  Score=67.21  Aligned_cols=91  Identities=18%  Similarity=0.208  Sum_probs=62.9

Q ss_pred             cCcceeeecCCcEEEEEEEeccC--CCeEEEEECCeeccC----CCCceEEEeCC--CCCeEEEEccCCCCCCCeEEEEE
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDP--IPVIQWRKNGKRVSG----TQSRYMVQEFP--PGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~~~~~----~~~~~~~~~~~--~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      ++..+.+..|+++.|.|.+.+.+  .+.+.|++++..+..    ...+.......  .....|.|.++.. .|+|.|.|.
T Consensus        14 p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~   92 (122)
T 3s35_X           14 PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR-SDQGLYTCA   92 (122)
T ss_dssp             SCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCG-GGCEEEEEE
T ss_pred             CCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCc-ccCEEEEEE
Confidence            34445788999999999998844  468899998774321    11111111000  0234599999998 999999999


Q ss_pred             eeeCCCceEeeEEEEEEecCC
Q psy2442          88 AENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        88 ~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      +.|..|.. ...+.|.|.++|
T Consensus        93 a~n~~g~~-~~~~~l~V~~~p  112 (122)
T 3s35_X           93 ASSGLMTK-KNSTFVRVHEKP  112 (122)
T ss_dssp             EECSSCEE-EEEEEEEEEEEE
T ss_pred             EccCCCce-EEEEEEEEeccC
Confidence            99998874 677788877655

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.49  E-value=9.2e-13  Score=64.69  Aligned_cols=79  Identities=28%  Similarity=0.429  Sum_probs=59.6

Q ss_pred             CcceeeecCCcEEEEEEEe-ccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442          17 PRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      +..+.+..|+.+.|.|... +.|.+.+.|++++.....  .+...     ....|.|.++.. .|+|.|.|.+.|..|..
T Consensus        17 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~--~~~~~-----~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~~   88 (98)
T 1gl4_B           17 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP--SRAMD-----FNGILTIRNVQP-SDAGTYVCTGSNMFAMD   88 (98)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCC--TTEEE-----ETTEEEECSCCG-GGCEEEEEEEECSSCEE
T ss_pred             CCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCC--ceeec-----CCCEEEEeCCCh-hhCEEEEEEecCCCCcc
Confidence            4556788999999999998 688889999997544322  12111     223599999998 99999999999998874


Q ss_pred             EeeEEEEEE
Q psy2442          96 VSAEASLTV  104 (111)
Q Consensus        96 ~~~~~~l~~  104 (111)
                       ...+.|.|
T Consensus        89 -~~~~~l~V   96 (98)
T 1gl4_B           89 -QGTATLHV   96 (98)
T ss_dssp             -EEEEEEEE
T ss_pred             -ccEEEEEE
Confidence             66666655

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.48  E-value=1.5e-12  Score=65.03  Aligned_cols=90  Identities=19%  Similarity=0.352  Sum_probs=66.1

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+..+.+..|+.+.|.|.+.+.  +.+.|++++..+... .++...... ....|.|.++.. .|+|.|.|.+
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~-~~~~~~~~~-~~~~L~I~~v~~-~D~G~Y~C~a   81 (108)
T 2dm7_A            7 GPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDG-GRYSLKQDG-TRCELQIHDLSV-ADAGEYSCMC   81 (108)
T ss_dssp             CCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSS-SSCEEEEET-TEEEEEESSCCT-TTCSEEEEEE
T ss_pred             CCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCC-CCEEEEecC-CEEEEEECCCCc-ccCEEEEEEE
Confidence            46677666777889999999999998765  689999998877543 555544322 334599999998 9999999998


Q ss_pred             eeCCCceEeeEEEEEEecCC
Q psy2442          89 ENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .|    . .....+.|...|
T Consensus        82 ~n----~-~~~~~l~V~~~p   96 (108)
T 2dm7_A           82 GQ----E-RTSATLTVRALP   96 (108)
T ss_dssp             TT----E-EEEEECEEECCC
T ss_pred             cC----C-EEEEEEEEecCC
Confidence            44    2 455666666544

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.48  E-value=1.3e-12  Score=74.94  Aligned_cols=102  Identities=22%  Similarity=0.325  Sum_probs=73.3

Q ss_pred             eeEEec----CCCeeEEcCcceeeecCCcEEEEEEEec-cCCCeEEEEECCeeccCCCCceEEEeCC-CCCeEEEEccCC
Q psy2442           3 RKVRFL----DPPEITLRPRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFP-PGGSLLRIEPVR   76 (111)
Q Consensus         3 ~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~   76 (111)
                      ..|.|.    .+|.+...+....+..|+.+.|.|.+.+ .|.+.+.|++++..+.... ........ .....|.|.++.
T Consensus       175 ~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~v~  253 (289)
T 3ejj_X          175 IWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPL-NSDFQDNYYKKVRALSLNAVD  253 (289)
T ss_dssp             EEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCE-EEEECSSSEEEEEEEEESSCC
T ss_pred             EEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccC-CcccccceEEeeEEEEEEeec
Confidence            456665    5777777777767788999999999988 6888999999998875421 11100000 023459999999


Q ss_pred             CCCCCeEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          77 HARDDAVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      . .|.|.|.|.+.|..|.. ...+.|.+...
T Consensus       254 ~-~d~G~Y~C~a~N~~G~~-~~s~~L~~~~~  282 (289)
T 3ejj_X          254 F-QDAGIYSCVASNDVGTR-TATMNFQVVES  282 (289)
T ss_dssp             S-SSCEEEEEEEECSSCEE-EEEEEEECC--
T ss_pred             c-cCCEEEEEEEEcCCCCc-cccEEEEEEec
Confidence            8 99999999999999875 77777665443

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.48  E-value=4.6e-12  Score=69.04  Aligned_cols=92  Identities=22%  Similarity=0.364  Sum_probs=72.1

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      +.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+......    .   ....|.+.++   .|+
T Consensus        99 ~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~----~---~~~~L~i~~~---~d~  168 (195)
T 2c5d_C           99 GYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----G---PQRSLHVPGL---NKT  168 (195)
T ss_dssp             EEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS----S---CCEEEEECCC---SSC
T ss_pred             EEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc----C---CCCeEEEccc---ccC
Confidence            57888889988877777788899999999999999999 99999999887543221    1   4455777765   478


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEE
Q psy2442          82 AVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      |.|.|.+.|..|...+..+.|.|
T Consensus       169 G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          169 SSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEE
T ss_pred             ceEEEEEEcCCCceEEEEEEEEE
Confidence            99999999998864235666666

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.48  E-value=1.1e-12  Score=75.50  Aligned_cols=103  Identities=19%  Similarity=0.267  Sum_probs=71.8

Q ss_pred             eeEEec----CCCeeEEcCcceeeecCCcEEEEEEEeccCCCe-EEEEECCeec----cCCCCceEEEeC--CCCCeEEE
Q psy2442           3 RKVRFL----DPPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRV----SGTQSRYMVQEF--PPGGSLLR   71 (111)
Q Consensus         3 ~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~----~~~~~~~~~~~~--~~~~~~l~   71 (111)
                      +.|.|.    .+|.+...+....+..|+.+.|.|.+.+.|.+. +.|++++..+    ... ........  ......|.
T Consensus       177 ~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~  255 (290)
T 2o26_X          177 FTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVK-HNSWHRGDFNYERQETLT  255 (290)
T ss_dssp             EEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEE-CCEEEEETTEEEEEEEEE
T ss_pred             EEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeec-ccccccCceeeEEEEEEE
Confidence            345554    677777666667888999999999999999886 9999988762    211 11111100  00234599


Q ss_pred             EccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          72 IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        72 ~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      |.++.. .|.|.|.|.+.|..|.. ...+.|.|.++|
T Consensus       256 I~~v~~-~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~P  290 (290)
T 2o26_X          256 ISSARV-DDSGVFMCYANNTFGSA-NVTTTLKVVEKG  290 (290)
T ss_dssp             ESSCCS-SSCEEEEEEEECSSCEE-EEEEEECC----
T ss_pred             EcCCCc-ccCeEEEEEEeCCCCcE-EEEEEEEEEeCC
Confidence            999998 99999999999999875 777777766553

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.48  E-value=3.2e-13  Score=81.79  Aligned_cols=101  Identities=14%  Similarity=0.092  Sum_probs=68.4

Q ss_pred             eeEEecCCCeeEEcC--cceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           3 RKVRFLDPPEITLRP--RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      +.|.|..+|.+...+  ..+.+..|+.+.|.|.+.+.|.|.+.|+++|..+.......  .    ....+....... .|
T Consensus       317 ~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~--~----~~~~~~~~~~~~-~D  389 (423)
T 3qs7_E          317 ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL--D----NGYSISKFCNHK-HQ  389 (423)
T ss_dssp             EEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC--S----SSSEEEEECCCT-TC
T ss_pred             EEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccc--c----CCcEEEEEeccc-cc
Confidence            568888888876554  34567789999999999999999999999999885431100  0    111122244555 89


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEEEecCCCCC
Q psy2442          81 DAVYECVAENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      +|.|.|.+.|..|.. ...+.|.+...|..|
T Consensus       390 ~G~YtC~A~N~~G~~-~~s~~L~v~~~p~~~  419 (423)
T 3qs7_E          390 PGEYIFHAENDDAQF-TKMFTLNIRSGTKHH  419 (423)
T ss_dssp             CSCEEEEEEETTEEE-EEEEEEC--------
T ss_pred             CEEEEEEEEcCCceE-EEEEEEEEecCCccc
Confidence            999999999999975 888888888777553

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.47  E-value=2.8e-13  Score=80.72  Aligned_cols=87  Identities=22%  Similarity=0.346  Sum_probs=67.2

Q ss_pred             EEecCCCeeEEcCcceeeecCCcEEEEEEEec-cCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeE
Q psy2442           5 VRFLDPPEITLRPRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAV   83 (111)
Q Consensus         5 l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~   83 (111)
                      |.|..+|.+...+..+.+..|+.+.|.|.+.+ .+.+.+.|+++|..+.....++....   ....|.|.++.. .|.|.
T Consensus         1 l~v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~---~~~~L~i~~~~~-~D~G~   76 (395)
T 1bih_A            1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRK---DEGSLVFLRPQA-SDEGH   76 (395)
T ss_dssp             ----CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECT---TSCCEEESSCCG-GGCEE
T ss_pred             CCcCCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEec---CCceEEEecCCC-CCCcE
Confidence            46788999988888888999999999999988 78889999999988765433333222   334589999998 99999


Q ss_pred             EEEEeeeCCCce
Q psy2442          84 YECVAENGVGDA   95 (111)
Q Consensus        84 y~c~~~~~~~~~   95 (111)
                      |.|.+.|..|..
T Consensus        77 Y~C~a~n~~g~~   88 (395)
T 1bih_A           77 YQCFAETPAGVA   88 (395)
T ss_dssp             EEEEEEETTEEE
T ss_pred             EEEEEEeCCCeE
Confidence            999999987653

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.47  E-value=3.9e-12  Score=75.75  Aligned_cols=95  Identities=27%  Similarity=0.502  Sum_probs=71.4

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--CeeccCC----CCceEEEeCCCCCeEEEEccCCCCCCCeE
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVSGT----QSRYMVQEFPPGGSLLRIEPVRHARDDAV   83 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~d~g~   83 (111)
                      +|.+.. +....+.+|+.+.|.|.+.+.|.+.+.|+++  +..+...    ..++...... ....|.|.++.. .|+|.
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~-~D~G~   77 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH-GSSSLHIKDVKL-SDSGR   77 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECS-SEEEEEEESCCG-GGCEE
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccC-CcceEEEcccCh-hhCEE
Confidence            355655 4446778899999999999999999999999  7776431    2455544322 345699999998 99999


Q ss_pred             EEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          84 YECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        84 y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      |.|.+.|..|.. ...+.|.|..+|
T Consensus        78 Y~C~a~n~~g~~-~~~~~l~V~~~P  101 (389)
T 2jll_A           78 YDCEAASRIGGH-QKSMYLDIEYAP  101 (389)
T ss_dssp             EEEEEECSSCEE-EEEEEEEEEEEE
T ss_pred             EEEEEEeCCCCc-ceEEEEEEEeCC
Confidence            999999998874 677777766543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.47  E-value=3.4e-12  Score=68.70  Aligned_cols=95  Identities=14%  Similarity=0.100  Sum_probs=69.3

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEe-ccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      ..|.|..++.....+. ..+..|+.+.|.|.+. +.+.+.+.|++++..+....          ....|.+.++.. .|.
T Consensus        79 ~~l~V~~~~~~~~~~~-~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~----------~~~~L~i~~v~~-~d~  146 (176)
T 1f2q_A           79 VYLEVFSDWLLLQASA-EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY----------ENHNISITNATV-EDS  146 (176)
T ss_dssp             EEEEEECSSEEEEESC-SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC----------CSSEEEESSCCG-GGC
T ss_pred             EEEEEeCcceeecCCc-ceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec----------CCCeEEECCCCc-ccC
Confidence            3566665555443333 4677999999999994 55566899999998874321          334588999998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      |.|.|.+.|..+...+..+.|.|.++|.
T Consensus       147 G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          147 GTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             EEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            9999999997554345667888887764

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.47  E-value=4e-12  Score=73.58  Aligned_cols=98  Identities=43%  Similarity=0.805  Sum_probs=68.5

Q ss_pred             ecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEe-CCCCCeEEEEccCCCCCCCeEEE
Q psy2442           7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQE-FPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus         7 v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      ...+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..  .++.... .++....|.|.++....|.|.|.
T Consensus         3 ~~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~--~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~   80 (304)
T 2yd9_A            3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS--QRFETIEFDESAGAVLRIQPLRTPRDENVYE   80 (304)
T ss_dssp             -CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------C--TTEEEEEETTTTEEEEEECSCCTTTTCSEEE
T ss_pred             CccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCC--CceEEEEecCCCceEEEEecccccCCCeEEE
Confidence            34688888888888899999999999999999999999999888753  3443332 22122568888887217999999


Q ss_pred             EEeeeCCCceEeeEEEEEEecC
Q psy2442          86 CVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        86 c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      |.+.|..|.. ...+.|.|...
T Consensus        81 C~a~n~~g~~-~~~~~l~V~~~  101 (304)
T 2yd9_A           81 CVAQNSVGEI-TVHAKLTVLRE  101 (304)
T ss_dssp             EEEECSSCEE-CCEEEEEEECG
T ss_pred             EEEECCCCeE-EEEEEEEEecc
Confidence            9999988763 66777777654

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.47  E-value=3.5e-12  Score=69.38  Aligned_cols=99  Identities=14%  Similarity=0.247  Sum_probs=71.2

Q ss_pred             eEEecCCCeeEEc---CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCC-CCC
Q psy2442           4 KVRFLDPPEITLR---PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVR-HAR   79 (111)
Q Consensus         4 ~l~v~~~p~~~~~---~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~   79 (111)
                      .|.|..+|.+...   .....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++...... ....|.+..+. . .
T Consensus        94 ~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~-~~~~~~~~~-~~~~L~i~~~~~~-~  170 (197)
T 3lcy_A           94 KLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNS-ENITIENTE-HYTHLVMKNVQRK-T  170 (197)
T ss_dssp             EEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC-SSEEEEECS-SEEEEEESSCCHH-H
T ss_pred             EEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCC-CceEEEEcC-CEEEEEEccccch-h
Confidence            3455544444321   23346678999999999999999999999999988643 454444322 33558888887 4 6


Q ss_pred             CCeEEEEEeeeCCCceEeeEEEEEEec
Q psy2442          80 DDAVYECVAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        80 d~g~y~c~~~~~~~~~~~~~~~l~~~~  106 (111)
                      |.|.|.|.+.|..|.. ...+.|.|.+
T Consensus       171 d~G~Y~C~a~n~~g~~-~~~~~l~V~~  196 (197)
T 3lcy_A          171 HAGKYKVQLSNVFGTV-DAILDVEIQD  196 (197)
T ss_dssp             HCEEEEEEEECSSCEE-EEEEEEEEEC
T ss_pred             hCceEEEEEEcCcCce-EEEEEEEEec
Confidence            9999999999999875 7777777654

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.46  E-value=7e-12  Score=67.58  Aligned_cols=90  Identities=26%  Similarity=0.423  Sum_probs=69.5

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      +.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+.... .        ....|.+.++   .|+
T Consensus        91 ~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~-~--------~~~~L~i~~~---~d~  158 (182)
T 1rhf_A           91 VWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-P--------SPSVLNVTGV---TQS  158 (182)
T ss_dssp             EEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE-E--------SSEEEEECCC---SSC
T ss_pred             EEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCC-C--------CceEEEEecc---ccC
Confidence            56788889998887777788899999999999999998 999999998875321 1        3344777765   578


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEE
Q psy2442          82 AVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      |.|.|.+.|..|......+.|.|
T Consensus       159 G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          159 TMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEE
T ss_pred             eEEEEEEECCCCCcccceEEEEe
Confidence            99999999998864233555544

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.45  E-value=1.5e-12  Score=71.56  Aligned_cols=100  Identities=25%  Similarity=0.410  Sum_probs=71.1

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEE-EeccCCCeEEEEECCe-eccCCCC--------ceEEEeCCCCCeEEEE
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCI-ARGDPIPVIQWRKNGK-RVSGTQS--------RYMVQEFPPGGSLLRI   72 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~-~~~~~~~--------~~~~~~~~~~~~~l~~   72 (111)
                      ..|.|..+|.+...+....+..|+.+.|.|. ..+.|.+.+.|++++. .+.....        ++....   ....|.+
T Consensus        97 ~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~L~i  173 (212)
T 1f97_A           97 IHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDP---KSGDLIF  173 (212)
T ss_dssp             EEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECT---TTCCEEE
T ss_pred             EEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecC---CCceEEE
Confidence            4566776766554444456789999999999 7888999999999998 7653211        122211   3445899


Q ss_pred             ccCCCCCCCeEEEEEeeeCCCce-EeeEEEEEEec
Q psy2442          73 EPVRHARDDAVYECVAENGVGDA-VSAEASLTVYE  106 (111)
Q Consensus        73 ~~~~~~~d~g~y~c~~~~~~~~~-~~~~~~l~~~~  106 (111)
                      .++.. .|.|.|.|.+.|..|.. .+..+.|.|.+
T Consensus       174 ~~~~~-~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          174 DPVTA-FDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             SSCCG-GGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             EecCh-hhCcEEEEEEccccCCccccceEEEEEEE
Confidence            99998 99999999999998864 34566666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.45  E-value=6.6e-13  Score=78.40  Aligned_cols=85  Identities=21%  Similarity=0.269  Sum_probs=64.1

Q ss_pred             eeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCC------CCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          21 AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFP------PGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      ....|+.+.+.|.+.+.|.|.+.|+++|..+... .........      .....|.+..+.. .|+|.|.|.+.|..|.
T Consensus       257 ~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~N~~G~  334 (347)
T 2ifg_A          257 TAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNET-SFIFTEFLEPAANETVRHGCLRLNQPTH-VNNGNYTLLAANPFGQ  334 (347)
T ss_dssp             CCEESSSEEEEEEEEEESCCEEEEEETTEECCCC-SSEEEEECCCCTTCCCEEEEEEESSCCG-GGCEEEEEEEEETTEE
T ss_pred             cCccCceEEEEEEeeecCCCcEEEEeCCEECCCC-cceeeEEEeecCCCcccceEEEECCCCc-ccCceEEEEEecCCCc
Confidence            3457899999999999999999999999988643 222211000      0134589999998 9999999999999987


Q ss_pred             eEeeEEEEEEecCC
Q psy2442          95 AVSAEASLTVYEGE  108 (111)
Q Consensus        95 ~~~~~~~l~~~~~~  108 (111)
                      . ...+.+.|.++|
T Consensus       335 ~-~~~~~l~V~~~P  347 (347)
T 2ifg_A          335 A-SASIMAAFMDNP  347 (347)
T ss_dssp             E-EEEEEECSCCCC
T ss_pred             e-eeEEEEEecCCC
Confidence            4 777777776654

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.44  E-value=4.8e-12  Score=70.28  Aligned_cols=87  Identities=29%  Similarity=0.418  Sum_probs=68.1

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      ..+.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+...           ....|.|.++.. .|.|.|.|.+
T Consensus        17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~-----------~~~~L~i~~v~~-~d~G~Y~C~~   84 (218)
T 3k0w_A           17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-----------NTSELIFNAVHV-KDAGFYVCRV   84 (218)
T ss_dssp             --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC-----------CSSEEEETTCCG-GGCEEEEEEE
T ss_pred             CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC-----------CCCEEEEccCCh-hhCeEeEEEE
Confidence            3466777788888999999999999999888899999999887542           234488999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEecC
Q psy2442          89 ENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~~  107 (111)
                      .|..+...+..+.+.+...
T Consensus        85 ~n~~~~~~s~~~~l~V~~~  103 (218)
T 3k0w_A           85 NNNFTFEFSQWSQLDVCDI  103 (218)
T ss_dssp             ECTTCCEECCCEEEEEECC
T ss_pred             EcCCCCceeeEEEEEEEcc
Confidence            9987654344566666543

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.44  E-value=4.1e-12  Score=69.30  Aligned_cols=88  Identities=30%  Similarity=0.550  Sum_probs=66.8

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      +|.+........+..|+.+.|.|.+.+.|.+.+.|++++..+...   .....   ....|.+.++.. .|.|.|.|.+.
T Consensus       113 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~---~~~~~---~~~~L~i~~v~~-~d~G~Y~C~a~  185 (201)
T 3s97_C          113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST---AEIST---SGAVLKIFNIQL-EDEGIYECEAE  185 (201)
T ss_dssp             EEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTT---CEEET---TTTEEEECSCCG-GGCEEEEEEEE
T ss_pred             CCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCc---eeecC---CCCEEEEccCCh-hhCEEEEEEEE
Confidence            344444444667889999999999999999999999998876532   22222   344599999998 99999999999


Q ss_pred             eCCCceEeeEEEEEEe
Q psy2442          90 NGVGDAVSAEASLTVY  105 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~~  105 (111)
                      |..|.. ...+.|.|.
T Consensus       186 n~~g~~-~~~~~l~V~  200 (201)
T 3s97_C          186 NIRGKD-KHQARIYVQ  200 (201)
T ss_dssp             ETTEEE-EEEEEEEEE
T ss_pred             ecCCce-eeeEEEEEe
Confidence            998874 666666654

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.43  E-value=4.6e-12  Score=73.35  Aligned_cols=96  Identities=25%  Similarity=0.503  Sum_probs=66.0

Q ss_pred             eeEEec---CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442           3 RKVRFL---DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus         3 ~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.|.|.   .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.... .+..     ....|.+.  .. .
T Consensus       195 ~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~-~~~~-----~~~~L~i~--~~-~  265 (304)
T 2yd9_A          195 ANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPED-DMPV-----GRNVLELT--DV-K  265 (304)
T ss_dssp             EEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSS-SCCB-----SEEEEEEC--SC-C
T ss_pred             EEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcc-cccC-----CcEEEEEc--cc-c
Confidence            345553   35666666666678899999999999999999999999998875431 1110     22224444  44 7


Q ss_pred             CCeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          80 DDAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        80 d~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      |+|.|.|.+.|..|.. ...+.|.|.+.+
T Consensus       266 d~G~Y~C~a~N~~G~~-~~~~~l~V~~~~  293 (304)
T 2yd9_A          266 DSANYTCVAMSSLGVI-EAVAQITVKSLP  293 (304)
T ss_dssp             SCEEEEEEEEETTEEE-EEEEEEC-----
T ss_pred             cCEEEEEEEEeCCCcE-EEEEEEEEecCc
Confidence            8999999999999874 777777776544

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.43  E-value=1.9e-12  Score=79.85  Aligned_cols=104  Identities=16%  Similarity=0.164  Sum_probs=77.8

Q ss_pred             eeEEecCCCeeEEcCc---ceeeecCCcEEEEEEEeccCCCe-EEEEECCeeccCCCCceEEEeCCC---CCeEEEEccC
Q psy2442           3 RKVRFLDPPEITLRPR---NQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPP---GGSLLRIEPV   75 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~---~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~   75 (111)
                      +.|.|..+|.+...+.   ...+..|+.+.|.|.+.+.|.+. +.|++++..+.....++......+   ....|.|.++
T Consensus       303 ~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v  382 (524)
T 2ec8_A          303 TTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRL  382 (524)
T ss_dssp             EEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSC
T ss_pred             EEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeec
Confidence            4677888888765443   46788999999999999999998 999999988765432332221110   1245999999


Q ss_pred             CCCCCCeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          76 RHARDDAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .. .|.|.|.|.+.|..|.. ...+.|.|..+|
T Consensus       383 ~~-~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~P  413 (524)
T 2ec8_A          383 KG-TEGGTYTFLVSNSDVNA-AIAFNVYVNTKP  413 (524)
T ss_dssp             CG-GGCEEEEEEEECSSCEE-EEEEEEEECEEE
T ss_pred             Cc-ccCeEEEEEEEecCceE-EEEEEEEEecCC
Confidence            98 99999999999999874 777777776544

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.43  E-value=1.4e-12  Score=81.00  Aligned_cols=98  Identities=13%  Similarity=0.060  Sum_probs=72.2

Q ss_pred             eeEEecCCCeeEEcC--cceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           3 RKVRFLDPPEITLRP--RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      +.|.|..+|.+...+  ....+..|+.+.|.|.+.+.|.|.+.|++++..+.... ++..     ....|.|..+.. .|
T Consensus       317 ~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~-~~~~-----~~~~L~I~~v~~-~D  389 (527)
T 3qs9_E          317 ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ-KGLD-----NGYSISKFCNHK-HQ  389 (527)
T ss_dssp             EEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBC-CBCS-----SSSEEEEECCCT-TC
T ss_pred             EEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCc-cccc-----CCcEEEEecCCc-cc
Confidence            567788888766444  23567789999999999999999999999999885431 2111     334588999998 99


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          81 DAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      +|.|.|.+.|..|.. ...+.|.|..+|
T Consensus       390 ~G~YtC~A~N~~g~~-~~~~~L~V~~~P  416 (527)
T 3qs9_E          390 PGEYIFHAENDDAQF-TKMFTLNIRRKP  416 (527)
T ss_dssp             CSCEEEEEEETTEEE-EEEEEEC--CCC
T ss_pred             CEEEEEEEEeCCCcE-EEEEEEEEecCC
Confidence            999999999998874 667777776655

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.43  E-value=7.9e-12  Score=68.42  Aligned_cols=100  Identities=16%  Similarity=0.197  Sum_probs=61.1

Q ss_pred             eeEEecC---CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442           3 RKVRFLD---PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus         3 ~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.|.|..   +|.+...+. ..+..|+.++|.|.+.+. .+.+.|++++..+.....++...........|.|.++.. .
T Consensus        91 ~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~  167 (198)
T 1ugn_A           91 LELVVTGAYIKPTLSAQPS-PVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSP-S  167 (198)
T ss_dssp             EEEEEECSSCCCEEEEESC-SEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEEEECCCCT-T
T ss_pred             EEEEEcccccCCccccCCc-cccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEEEecccCc-c
Confidence            4566665   455544333 567899999999999887 679999999887642211111111001235599999998 9


Q ss_pred             CCeEEEEEeeeCCCce----EeeEEEEEEe
Q psy2442          80 DDAVYECVAENGVGDA----VSAEASLTVY  105 (111)
Q Consensus        80 d~g~y~c~~~~~~~~~----~~~~~~l~~~  105 (111)
                      |.|.|.|.+.|..+..    .+..+.|.|.
T Consensus       168 D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          168 RRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             SCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             cCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            9999999999975421    1445555553

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.43  E-value=1.2e-11  Score=67.18  Aligned_cols=89  Identities=20%  Similarity=0.278  Sum_probs=66.0

Q ss_pred             CCCeeEEcCcceeeec-CCcEEEEEEEeccCC--CeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442           9 DPPEITLRPRNQAVKA-GGITSFYCIARGDPI--PVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~-g~~~~l~c~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      .+|.+...+. ..+.. |+.+.|.|.+.+.+.  +.+.|++++..+.......       ....|.|.++.. .|.|.|.
T Consensus         2 ~~P~i~~~~~-~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-------~~~~L~i~~~~~-~d~G~Y~   72 (190)
T 2wv3_A            2 NEPRIVTSEE-VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-------SNMEYRINKPRA-EDSGEYH   72 (190)
T ss_dssp             -CCEEEECCC-EECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-------SEEEEEESSCCG-GGCEEEE
T ss_pred             CCCcccccce-EEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-------ccEEEEEecCCc-ccCEEEE
Confidence            4667665443 45556 999999999988876  6899999998876431111       234589999998 9999999


Q ss_pred             EEeeeCCCceEeeEEEEEEecCC
Q psy2442          86 CVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        86 c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      |.+.|. +. ....+.|.+..+|
T Consensus        73 C~~~n~-~~-~~~~~~l~V~~~p   93 (190)
T 2wv3_A           73 CVYHFV-SA-PKANATIEVKAAP   93 (190)
T ss_dssp             EEEEET-TE-EEEEEEEEEECCC
T ss_pred             EEEEeC-Cc-ccccEEEEEecCC
Confidence            999998 65 3677777776654

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.42  E-value=1.1e-12  Score=71.81  Aligned_cols=93  Identities=15%  Similarity=0.195  Sum_probs=65.2

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+.. .+..|+.++|.|.+.+ +.+.+.|++++..+...  .. ..........|.|.++.. .|+|.|.|.+
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~--~~-~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a   77 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWD--RQ-NPLEPKNKARFSIPSMTE-DYAGRYRCYY   77 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSE--EE-CCCSSSSEEEEEESSCCG-GGCEEEEEEE
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccc--cc-ccccCCceEEEEeccCCc-ccCceEEEEE
Confidence            35677666666 7889999999999888 66799999998766421  10 000001345599999998 9999999999


Q ss_pred             eeCCC-ceEeeEEEEEEecC
Q psy2442          89 ENGVG-DAVSAEASLTVYEG  107 (111)
Q Consensus        89 ~~~~~-~~~~~~~~l~~~~~  107 (111)
                      .|..| ...+..+.|.+.+.
T Consensus        78 ~n~~g~~~~s~~~~l~V~~~   97 (196)
T 3p2t_A           78 RSPVGWSQPSDPLELVMTGA   97 (196)
T ss_dssp             EETTEEBCCCCCEEEEEECS
T ss_pred             eCCCcccCCCccEEEEecCC
Confidence            99876 22244566666543

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.42  E-value=3.1e-12  Score=70.75  Aligned_cols=87  Identities=26%  Similarity=0.491  Sum_probs=64.8

Q ss_pred             eEEecC-CCeeEEcCcceeeecCCcEEEEEEE-eccCCCeEEEEECCeeccCC-------CCceEEEeCCCCCeEEEEcc
Q psy2442           4 KVRFLD-PPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGT-------QSRYMVQEFPPGGSLLRIEP   74 (111)
Q Consensus         4 ~l~v~~-~p~~~~~~~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~   74 (111)
                      .|.|.. ++.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+...       ..++...    ....|.|.+
T Consensus       101 ~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~  176 (217)
T 2vr9_A          101 SLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV----DGGNLLISN  176 (217)
T ss_dssp             EEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEE----TTTEEEESS
T ss_pred             eEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEec----CCCcEEEee
Confidence            444443 3444445556678899999999998 88899999999999887621       2233332    234599999


Q ss_pred             CCCCCCCeEEEEEeeeCCCce
Q psy2442          75 VRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      +.. .|.|.|.|.+.|..|..
T Consensus       177 ~~~-~d~G~Y~C~a~N~~G~~  196 (217)
T 2vr9_A          177 VEP-IDEGNYKCIAQNLVGTR  196 (217)
T ss_dssp             CCS-TTCEEEEEEEEETTEEE
T ss_pred             CCH-HHCeEEEEEEEccccee
Confidence            998 99999999999998864

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.42  E-value=4.2e-12  Score=68.68  Aligned_cols=79  Identities=13%  Similarity=0.211  Sum_probs=62.7

Q ss_pred             ceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEee
Q psy2442          19 NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSA   98 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~   98 (111)
                      ...+..|+.+.|.|.+.+.|.+.+.|++++..+.       .     ....|.+.++.. .|.|.|.|.+.|..+.. ..
T Consensus       106 ~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~-------~-----~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~~-~~  171 (184)
T 2ny1_B          106 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------Q-----GGKTLSVSQLEL-QDSGTWTCTVLQNQKKV-EF  171 (184)
T ss_dssp             CSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE-------E-----ESSEEEESSCCG-GGCEEEEEEEEETTEEE-EE
T ss_pred             CceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc-------c-----CceEEEEecCCc-CCCeEEEEEEEECCceE-EE
Confidence            3467899999999999888888999998765431       1     234488999998 99999999999987764 77


Q ss_pred             EEEEEEecCCCCC
Q psy2442          99 EASLTVYEGEEKP  111 (111)
Q Consensus        99 ~~~l~~~~~~~~p  111 (111)
                      .+.|.|.+.|..|
T Consensus       172 ~~~l~V~~~p~~~  184 (184)
T 2ny1_B          172 KIDIVVLAFQKAS  184 (184)
T ss_dssp             EEEEEEECCCC--
T ss_pred             EEEEEEEecCCCC
Confidence            8888888887654

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.42  E-value=5.8e-12  Score=70.61  Aligned_cols=93  Identities=31%  Similarity=0.429  Sum_probs=63.5

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCeEEEEE----CCeeccCCCCceEEE-e-----CCCCCeEEEEccCCCCCCCeEEEE
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPVIQWRK----NGKRVSGTQSRYMVQ-E-----FPPGGSLLRIEPVRHARDDAVYEC   86 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~----~~~~~~~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~d~g~y~c   86 (111)
                      +....+..|+.+.|.|.+.+.|.+.+.|++    ++..+......+... .     .......|.+..+.. .|.|.|.|
T Consensus       121 ~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C  199 (241)
T 3grw_A          121 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSE-RDGGEYLC  199 (241)
T ss_dssp             TCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCG-GGCEEEEE
T ss_pred             CccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCc-ccCcEEEE
Confidence            445667789999999999999999999999    676664332221110 0     000224488999998 99999999


Q ss_pred             EeeeCCCceEeeEEEEEEecCCCCC
Q psy2442          87 VAENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        87 ~~~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      .+.|..|.. ...+.|.|.++|..|
T Consensus       200 ~a~N~~g~~-~~~~~l~V~~~p~~~  223 (241)
T 3grw_A          200 RATNFIGVA-EKAFWLSVHGPRAAE  223 (241)
T ss_dssp             EEECSSCEE-EEEEEEEC-------
T ss_pred             EEecCcceE-EEEEEEEecCCCCCC
Confidence            999999875 778888887776543

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.42  E-value=4.1e-12  Score=68.34  Aligned_cols=92  Identities=15%  Similarity=0.146  Sum_probs=66.9

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      ..|.|..++.....+ ...+..|+.+.|.|.+.+.+++ .+.|++++..+...     .     ....|.|.++.. .|.
T Consensus        82 ~~l~V~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~-----~-----~~~~L~i~~v~~-~d~  149 (175)
T 1fnl_A           82 VQLEVHIGWLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-----H-----HNSDFHIPKATL-KDS  149 (175)
T ss_dssp             EEEEEECSSEEEECS-CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-----E-----ECCCEEESSCCG-GGC
T ss_pred             EEEEEeCCCceeeCC-CceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC-----C-----CCCEEEEcccCh-hhC
Confidence            456666555544443 3567899999999999877665 89999998876321     0     223488999998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEec
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~  106 (111)
                      |.|.|.+.|..+...+..+.|.|.+
T Consensus       150 G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          150 GSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             eEEEEEEEcCCCCccCccEEEEEeC
Confidence            9999999997654445666777654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.42  E-value=2.4e-12  Score=78.26  Aligned_cols=95  Identities=24%  Similarity=0.421  Sum_probs=68.2

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeec-cCC--CCceEEEeCCCCCeEEEEccCCCCCCCeEEEE
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV-SGT--QSRYMVQEFPPGGSLLRIEPVRHARDDAVYEC   86 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~-~~~--~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c   86 (111)
                      +|.+...+....+.+|+++++.|.+ +.|.+.+.|++.+... ...  ..++...    ....|.|.+++. .|+|.|.|
T Consensus       341 ~P~i~~~~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~-~D~G~Y~C  414 (440)
T 3zyj_A          341 APVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVL----SDGTLNFTNVTV-QDTGMYTC  414 (440)
T ss_dssp             CCCEEECCCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEEC----TTCCEEESSCCS-TTCEEEEE
T ss_pred             CCcccccccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEEc----cCCeEEEccCCh-hhCEEEEE
Confidence            5677777777889999999999999 5678899999854433 211  1233332    233499999998 99999999


Q ss_pred             EeeeCCCceEeeEEEEEEecCCCCC
Q psy2442          87 VAENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        87 ~~~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      .+.|..|.. .....+.|.+.+.+|
T Consensus       415 ~a~N~~G~~-~~~~~~~v~~~~~~~  438 (440)
T 3zyj_A          415 MVSNSVGNT-TASATLNVTGTHHHH  438 (440)
T ss_dssp             EEECSSCEE-EEEEEEEEC------
T ss_pred             EEEcCCCcE-EEEEEEEEecccccc
Confidence            999999975 788888887776543

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.41  E-value=2.5e-11  Score=66.84  Aligned_cols=84  Identities=18%  Similarity=0.319  Sum_probs=60.9

Q ss_pred             eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeE
Q psy2442          20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAE   99 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~   99 (111)
                      +.+..|+.+.|.|.+.|.|.+.+.|++......  ........   ....|.|.++.. .|.|.|.|.+.|..+. .+..
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~--~~~~~~~~---~~~~L~I~~v~~-~D~G~Y~C~a~n~~~~-~~~~   83 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL--NGKVTNEG---TTSTLTMNPVSF-GNEHSYLCTATCESRK-LEKG   83 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCC--SSEEEEET---TEEEEEESSCCG-GGCSEEEEEEEETTEE-EEEE
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc--cceEEEcC---CccEEEECcCCH-HHCEEEEEEEEECCce-EeeE
Confidence            345589999999999999989999998432111  12222111   334599999998 9999999999998775 3677


Q ss_pred             EEEEEecCCCC
Q psy2442         100 ASLTVYEGEEK  110 (111)
Q Consensus       100 ~~l~~~~~~~~  110 (111)
                      +.|.|..+|..
T Consensus        84 ~~l~V~~~p~~   94 (202)
T 1vca_A           84 IQVEIYSFPKD   94 (202)
T ss_dssp             EEEEEEBCCSC
T ss_pred             EEEEEEeCCCC
Confidence            78888776643

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.40  E-value=2.4e-13  Score=78.81  Aligned_cols=96  Identities=16%  Similarity=0.283  Sum_probs=69.3

Q ss_pred             EEecCCCeeEEcC-cceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442           5 VRFLDPPEITLRP-RNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus         5 l~v~~~p~~~~~~-~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      |.|..+|.+...+ ....+..|+.+.|.|.+.+.|.| .+.|++++..+... ..  . .   ....+.+..+.. .|+|
T Consensus       206 l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~-~~--~-~---~~~~l~i~~v~~-~d~G  277 (308)
T 4fom_A          206 LDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDG-LL--A-S---DNTLHFVHPLTF-NYSG  277 (308)
T ss_dssp             CCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSS-CB--C-S---TTEEECCSCCCS-CCCS
T ss_pred             EEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCc-EE--E-c---CCeEEEECCCCh-hhCE
Confidence            4455556554333 33455678899999999999888 68999988776432 11  1 0   334466778888 9999


Q ss_pred             EEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          83 VYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      .|.|.+.|..|.. +..+.|.|.++|+
T Consensus       278 ~Y~C~A~N~~G~~-~~~~~l~V~~~P~  303 (308)
T 4fom_A          278 VYICKVTNSLGQR-SDQKVIYISDPPH  303 (308)
T ss_dssp             EEEEEEEETTEEE-EEEEECCEECCC-
T ss_pred             EEEEEEEeCCCcE-EEEEEEEEEcCCC
Confidence            9999999999975 8888898988885

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.40  E-value=1.4e-11  Score=76.80  Aligned_cols=105  Identities=15%  Similarity=0.159  Sum_probs=72.9

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEe----ccCCCeEEEEECCeeccCCCC-----ceEEEeCCCCCeEEEEc
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIAR----GDPIPVIQWRKNGKRVSGTQS-----RYMVQEFPPGGSLLRIE   73 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~----~~~~~~~~w~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~   73 (111)
                      +.|.|...+.....+....+..|+.+.|.|.+.    +.|.+.+.|+++|..+.....     .+......+....|.|.
T Consensus       435 ~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  514 (585)
T 2ocw_A          435 VEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLN  514 (585)
T ss_pred             EEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEEC
Confidence            456666543333345667888999999999986    566778999999887642211     12221111123469999


Q ss_pred             cCCCCCCCeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          74 PVRHARDDAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      ++.. .|+|.|.|.+.|..|......+.|.|.++|
T Consensus       515 ~v~~-~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          515 LVTR-ADEGWYWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             CCCc-ccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence            9998 999999999999988654455788887765

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.40  E-value=1.8e-11  Score=76.73  Aligned_cols=91  Identities=25%  Similarity=0.457  Sum_probs=74.8

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      .|.+...+....+..|+++.+.|.+.|.|.|.+.|++++..+... .++.+...+ ....|.+..+.+ .|+|.|.|.+.
T Consensus       482 ~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s-~~~~i~~~~-~~~~L~I~~~~~-~D~G~Yt~~A~  558 (573)
T 3uto_A          482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS-VKYMKRYNG-NDYGLTINRVKG-DDKGEYTVRAK  558 (573)
T ss_dssp             SCEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSS-SSEEEEEET-TEEEEEECSCCG-GGCEEEEEEEE
T ss_pred             CCccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccC-CcEEEEEcC-CEEEEEEcCCCc-ccCcEEEEEEE
Confidence            466666677778899999999999999999999999999998654 566665433 445699999998 99999999999


Q ss_pred             eCCCceEeeEEEEEE
Q psy2442          90 NGVGDAVSAEASLTV  104 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~  104 (111)
                      |..|.. +..+.|.|
T Consensus       559 N~~G~~-~~~v~l~V  572 (573)
T 3uto_A          559 NSYGTK-EEIVFLNV  572 (573)
T ss_dssp             ETTEEE-EEEEEEEE
T ss_pred             eCCCcE-EEEEEEEE
Confidence            999874 77776655

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.40  E-value=1.1e-11  Score=67.85  Aligned_cols=92  Identities=20%  Similarity=0.162  Sum_probs=63.9

Q ss_pred             cCcceeeecCCcEEEEEEEeccCC-----CeEEEEECCeeccCCCCceEEEeCC--CCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDPI-----PVIQWRKNGKRVSGTQSRYMVQEFP--PGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      ++..+.+..|+.+.|.|...+.+.     +.+.|++.+........++.+....  .....|.|.++.. .|+|.|.|.+
T Consensus         8 p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~~   86 (202)
T 3bp6_B            8 PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQV-RDSGQYRCLV   86 (202)
T ss_dssp             SCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCG-GGCEEEEEEE
T ss_pred             CCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCH-HHCcEEEEEE
Confidence            334567889999999999988775     7899999444433222444443210  0224599999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEecCCC
Q psy2442          89 ENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      .|..+.. ...+.|.|..++.
T Consensus        87 ~~~~~~~-~~~~~l~V~~~~~  106 (202)
T 3bp6_B           87 ICGAAWD-YKYLTVKVKASYM  106 (202)
T ss_dssp             EETTEEE-EEEEEEEEEBCCC
T ss_pred             EeCCCcc-eEEEEEEecCCCC
Confidence            9987753 6677777776544

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.40  E-value=1.2e-11  Score=68.71  Aligned_cols=93  Identities=31%  Similarity=0.512  Sum_probs=67.1

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCeEEEEE----CCeeccCCCCceE-EEeC----CCCCeEEEEccCCCCCCCeEEEEE
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPVIQWRK----NGKRVSGTQSRYM-VQEF----PPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~----~~~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      +....+..|+.+.|.|.+.+.|.+.+.|++    ++..+........ ....    ......|.+..+.. .|.|.|.|.
T Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~  203 (231)
T 3ojm_B          125 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTE-ADAGEYICK  203 (231)
T ss_dssp             SCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCG-GGCEEEEEE
T ss_pred             CCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCH-HHCeEEEEE
Confidence            344678889999999999999999999999    6666543222111 1110    01234589999998 999999999


Q ss_pred             eeeCCCceEeeEEEEEEecCCCCC
Q psy2442          88 AENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        88 ~~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      +.|..|.. ...+.|.|..+|.+|
T Consensus       204 a~n~~g~~-~~~~~l~V~~~p~~p  226 (231)
T 3ojm_B          204 VSNYIGQA-NQSAWLTVLPKQQAP  226 (231)
T ss_dssp             EEETTEEE-EEEEEEEEECCC---
T ss_pred             EEeccceE-eeEEEEEEecCCCCC
Confidence            99999875 888888888887765

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.40  E-value=1.9e-11  Score=72.99  Aligned_cols=99  Identities=30%  Similarity=0.465  Sum_probs=73.1

Q ss_pred             eeEEecCCCe------eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCC
Q psy2442           3 RKVRFLDPPE------ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVR   76 (111)
Q Consensus         3 ~~l~v~~~p~------~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   76 (111)
                      ..|.|...|.      +...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....++...    ....|.+.++.
T Consensus       208 ~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~----~~~~L~i~~~~  283 (403)
T 3laf_A          208 AEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL----GGSNLLISNVT  283 (403)
T ss_dssp             EEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEE----TTTEEEECSCC
T ss_pred             eeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEEC----CccEEEEeCCC
Confidence            3455555442      2334555677899999999999999999999999998876543444433    34459999999


Q ss_pred             CCCCCeEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          77 HARDDAVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      . .|.|.|.|.+.|..|.. .....+.+..+
T Consensus       284 ~-~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~  312 (403)
T 3laf_A          284 D-DDSGTYTCVVTYKNENI-SASAELTVLVP  312 (403)
T ss_dssp             G-GGCEEEEEEEEETTEEE-EEEEEEEEEEE
T ss_pred             H-HHCEEEEEEEEcCCCce-EEEEEEEEECC
Confidence            8 99999999999988763 66666666543

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.40  E-value=3.1e-11  Score=68.07  Aligned_cols=92  Identities=18%  Similarity=0.287  Sum_probs=62.2

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEE--CCeecc-----------CCCCceEEEeCCCCCeEEEEccCCCC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK--NGKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHA   78 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~--~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (111)
                      .+...+..+.+..|++++|.|.+.+.+.+.+.|++  .+..+.           ....++.... ......|.|.++.. 
T Consensus       137 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~-  214 (247)
T 2ghw_B          137 TLTQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSG-SGTDFTLTISRLEP-  214 (247)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEC-SSSEEEEEECSCCG-
T ss_pred             EEEccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEec-CCCeEEEEECcCCH-
Confidence            34555666678899999999999998888999998  444321           1123454432 11334599999998 


Q ss_pred             CCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          79 RDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        79 ~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      .|+|.|.|.+.|..+........|.|.
T Consensus       215 ~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          215 EDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             HHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            999999999988543322334455554

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.39  E-value=1.1e-11  Score=67.10  Aligned_cols=80  Identities=18%  Similarity=0.356  Sum_probs=59.5

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCC-CCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGT-QSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      +|.+...+....+..|+.+.|.|...+.+.+.+.|++++..+... ..++...    ....|.+.++.. .|.|.|.|.+
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~-~d~G~Y~C~~   76 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML----ANNNLQILNINK-SDEGIYRCEG   76 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEEC----TTSCEEETTCCG-GGCEEEEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEe----cCCCEEEeeCCH-hHCcEEEEEE
Confidence            567777777888999999999999999888899999988776532 2444433    233489999998 9999999999


Q ss_pred             eeCCCc
Q psy2442          89 ENGVGD   94 (111)
Q Consensus        89 ~~~~~~   94 (111)
                      .+..+.
T Consensus        77 ~~~~~~   82 (189)
T 2v5t_A           77 RVEARG   82 (189)
T ss_dssp             EETTTT
T ss_pred             EEcCCC
Confidence            987643

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.39  E-value=1e-11  Score=68.71  Aligned_cols=104  Identities=17%  Similarity=0.185  Sum_probs=66.9

Q ss_pred             eEEecC--CCeeEEc-CcceeeecCCcEEEEEEEeccC--CCeEEEEECCeeccCCCCceEEEeC------CCCCeEEEE
Q psy2442           4 KVRFLD--PPEITLR-PRNQAVKAGGITSFYCIARGDP--IPVIQWRKNGKRVSGTQSRYMVQEF------PPGGSLLRI   72 (111)
Q Consensus         4 ~l~v~~--~p~~~~~-~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~------~~~~~~l~~   72 (111)
                      .|.|..  +|.+... +..+.+..|++++|.|.+.+.+  .+.+.|++++..+............      ......|.|
T Consensus        96 ~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I  175 (213)
T 2x1w_L           96 IVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI  175 (213)
T ss_dssp             EEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEE
T ss_pred             EEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEE
Confidence            444533  2333333 3334788999999999998754  3479999987764321000000000      001234999


Q ss_pred             ccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          73 EPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        73 ~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      .++.. .|+|.|.|.+.|..|.. ...+.|.|.+.|.
T Consensus       176 ~~v~~-~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~  210 (213)
T 2x1w_L          176 DGVTR-SDQGLYTCAASSGLMTK-KNSTFVRVHEDPI  210 (213)
T ss_dssp             SSCCG-GGCEEEEEEEECSSCEE-EEEEEEEEEC---
T ss_pred             CCCCc-ccCEEEEEEEecCCCcE-EEEEEEEEecccc
Confidence            99998 99999999999999875 7888888887653

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.38  E-value=2.7e-12  Score=71.38  Aligned_cols=93  Identities=34%  Similarity=0.519  Sum_probs=68.0

Q ss_pred             CCeeEEcC----cceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCC--ceEEEeCCCCCeEEEEccCCCCCCCeE
Q psy2442          10 PPEITLRP----RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS--RYMVQEFPPGGSLLRIEPVRHARDDAV   83 (111)
Q Consensus        10 ~p~~~~~~----~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~d~g~   83 (111)
                      +|.+...+    ....+..|+.+.|.|.+.+.+.+.+.|++++..+.....  ......   ....|.|.++.. .|.|.
T Consensus        15 ~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~-~d~G~   90 (231)
T 3ojm_B           15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN---QHWSLIMESVVP-SDKGN   90 (231)
T ss_dssp             EEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEG---GGTEEEECSCCG-GGCEE
T ss_pred             CCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeec---CcceEEEecCCc-ccCEE
Confidence            45554333    556788999999999999999889999999988753211  112221   334589999998 99999


Q ss_pred             EEEEeeeCCCceEeeEEEEEEecC
Q psy2442          84 YECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        84 y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      |.|.+.|..+.. ...+.+.+...
T Consensus        91 Y~C~~~n~~~~~-~~~~~l~V~~~  113 (231)
T 3ojm_B           91 YTCVVENEYGSI-NHTYHLDVVER  113 (231)
T ss_dssp             EEEEEEETTEEE-EEEEEEEEECC
T ss_pred             EEEEEecccCcc-cccEEEEEEcC
Confidence            999999987764 66667776653

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=9.2e-12  Score=61.49  Aligned_cols=81  Identities=20%  Similarity=0.325  Sum_probs=60.7

Q ss_pred             ceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEee
Q psy2442          19 NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSA   98 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~   98 (111)
                      .+.+..|+.+.|.|.+. .+.+.+.|++++..+... .++.+.... ....|.|.++.. .|.|.|.|.+.+.     ..
T Consensus        20 ~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~-~~~~~~~~~-~~~~L~I~~~~~-~D~G~Y~C~a~~~-----~~   90 (102)
T 2eo1_A           20 EVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSS-SKVRVEAVG-CTRRLVVQQAGQ-AEAGEYSCEAGGQ-----QL   90 (102)
T ss_dssp             EEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCC-SSEEEEEET-TEEEEEETTCCT-TTCSCEEEEETTE-----EC
T ss_pred             cEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCC-CCEEEEEcC-CEEEEEECCCCc-ccCEEEEEEcCCC-----cE
Confidence            35788999999999987 777899999999988654 455544311 335699999998 9999999998542     44


Q ss_pred             EEEEEEecCC
Q psy2442          99 EASLTVYEGE  108 (111)
Q Consensus        99 ~~~l~~~~~~  108 (111)
                      .+.|.|.+++
T Consensus        91 ~~~l~V~~p~  100 (102)
T 2eo1_A           91 SFRLQVAGQC  100 (102)
T ss_dssp             CEEEEEESCC
T ss_pred             EEEEEEeCCC
Confidence            5667776654

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.38  E-value=3e-11  Score=66.63  Aligned_cols=92  Identities=17%  Similarity=0.241  Sum_probs=62.0

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCe--ec-----------cCCCCceEEEeCCCCCeEEEEccCCC
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK--RV-----------SGTQSRYMVQEFPPGGSLLRIEPVRH   77 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~   77 (111)
                      +.+...+..+.+..|+.+.|.|.+.+.+.+.+.|++...  ..           .....++...... ....|.|.++..
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~   80 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSG-RDSSFTISSLES   80 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCG
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccC-CEEEEEECCCCc
Confidence            344555667788999999999999998888999998321  10           0112455444211 334599999998


Q ss_pred             CCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442          78 ARDDAVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        78 ~~d~g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                       .|+|.|.|.+.|..+........+.|
T Consensus        81 -~D~G~Y~C~~~~~~~~~~~~~~~l~V  106 (213)
T 3r06_A           81 -EDIGSYYCQQYYNYPWTFGPGTKLEI  106 (213)
T ss_dssp             -GGCSEEEEEECSSSSCEECCCEEEEE
T ss_pred             -ccCEEEEEecccCCceEEcCCceEEE
Confidence             99999999998865432233344544

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.38  E-value=2.6e-11  Score=68.96  Aligned_cols=101  Identities=21%  Similarity=0.291  Sum_probs=68.3

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCC-----eEEEEE--CCeecc-----------CCCCceEEEeCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIP-----VIQWRK--NGKRVS-----------GTQSRYMVQEFP   64 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-----~~~w~~--~~~~~~-----------~~~~~~~~~~~~   64 (111)
                      ..|.|..++.+...+..+.+..|++++|.|.+.+.+.+     .+.|++  .+..+.           ....++......
T Consensus       114 ~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~  193 (256)
T 1nqb_A          114 TTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSG  193 (256)
T ss_dssp             EEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET
T ss_pred             eeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccC
Confidence            35777777777667777788999999999999887765     899999  444321           112344433211


Q ss_pred             CCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          65 PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        65 ~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                       ....|.|.++.. .|+|.|.|.+.+...........|.|.
T Consensus       194 -~~~~L~I~~v~~-~DsG~Y~C~a~~~~~~~fg~gt~l~V~  232 (256)
T 1nqb_A          194 -TDFTLKISRVEA-EDLGVYYCFQGSHVPYTFGGGTKLEIK  232 (256)
T ss_dssp             -TEEEEEESSCCG-GGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             -CEEEEEECCCCh-HHCEEEEEEEccCCceEECCCEEEEEE
Confidence             334599999998 999999999987543222233445554

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.37  E-value=4.6e-14  Score=90.13  Aligned_cols=97  Identities=31%  Similarity=0.478  Sum_probs=0.0

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      ..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++....   ....|.|.++.. .|+|.|.|.
T Consensus       664 ~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~-~~~~~~~---~~~~L~I~~v~~-~D~G~Y~C~  738 (772)
T 3v2a_R          664 RVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED-SGIVLKD---GNRNLTIRRVRK-EDEGLYTCQ  738 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCC-CCeEEcC---CCcEEEECcCCH-HHCEEEEEE
Confidence            56777776666677889999999999999999999999999887543 2333322   345589999998 999999999


Q ss_pred             eeeCCCceEeeEEEEEEecCCCC
Q psy2442          88 AENGVGDAVSAEASLTVYEGEEK  110 (111)
Q Consensus        88 ~~~~~~~~~~~~~~l~~~~~~~~  110 (111)
                      +.|..|.. ...+.|.|.++|..
T Consensus       739 a~N~~G~~-~~~~~l~V~~~p~~  760 (772)
T 3v2a_R          739 ACSVLGCA-KVEAFFIIEGAQEK  760 (772)
T ss_dssp             -----------------------
T ss_pred             EEeCCcce-eEEEEEEEECCCCc
Confidence            99999975 77888888877754

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.37  E-value=2.3e-11  Score=67.24  Aligned_cols=96  Identities=33%  Similarity=0.523  Sum_probs=66.8

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCC-CceEEEeCCCCCeE--EEEccCCCCCCCeEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ-SRYMVQEFPPGGSL--LRIEPVRHARDDAVY   84 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~--l~~~~~~~~~d~g~y   84 (111)
                      ..+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.... ........+ ....  +.+.++.. .|.|.|
T Consensus         7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~-~~~~~~l~i~~v~~-~d~G~Y   84 (217)
T 2vr9_A            7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKD-GALFFYRTMQGKKE-QDGGEY   84 (217)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTT-SCEEESSCCBSSSC-BCCEEE
T ss_pred             cCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecC-CceEEEEEeccCCc-ccCceE
Confidence            457888888888889999999999999998888999999998875431 112222111 1111  24667787 999999


Q ss_pred             EEEeeeCCCceEeeEEEEEEe
Q psy2442          85 ECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        85 ~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      .|.+.|..|........+.+.
T Consensus        85 ~C~~~n~~g~~~~~~~~l~v~  105 (217)
T 2vr9_A           85 WCVAKNRVGQAVSRHASLQIA  105 (217)
T ss_dssp             EEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEecCCCccccccceEEEE
Confidence            999999876432333444443

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.37  E-value=2.2e-12  Score=75.34  Aligned_cols=95  Identities=17%  Similarity=0.257  Sum_probs=70.1

Q ss_pred             eEEecCCCeeEEc-CcceeeecCCcEEEEEEEeccCCCe-EEEEECCeeccCCCCceEEEeCCCCCeEEEEc-cCCCCCC
Q psy2442           4 KVRFLDPPEITLR-PRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIE-PVRHARD   80 (111)
Q Consensus         4 ~l~v~~~p~~~~~-~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~d   80 (111)
                      .|.|..+|.+... .....+..|+.+.|.|.+.+.|.+. +.|++++..+...   ...     ....|.|. .+.. .|
T Consensus       225 ~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~---~~~-----~~~~L~i~~~v~~-~d  295 (331)
T 3u83_A          225 TLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG---VEA-----QNRTLFFKGPINY-SL  295 (331)
T ss_dssp             ECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT---EEE-----ETTEEEECSCCCG-GG
T ss_pred             EEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccccc---cee-----cCcEEEEeCCCcc-cc
Confidence            4556566665533 3334577899999999999999997 9999998876532   222     22348888 8888 99


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          81 DAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .|.|.|.+.|..|.. ...+.|.|...+
T Consensus       296 ~G~Y~C~a~N~~G~~-~~~~~l~V~~~~  322 (331)
T 3u83_A          296 AGTYICEATNPIGTR-SGQVEVNITEAA  322 (331)
T ss_dssp             CEEEEEEEEETTEEE-EEEEEECCBC--
T ss_pred             CeEEEEEEEeccccc-eEEEEEEEeccc
Confidence            999999999999875 777777776554

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.36  E-value=3.8e-12  Score=69.64  Aligned_cols=93  Identities=15%  Similarity=0.162  Sum_probs=64.1

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      ..+|.+...+.. .+..|++++|.|.+.+.+. .+.|++++..+...   ............|.|.++.. .|+|.|.|.
T Consensus         3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~---~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~   76 (196)
T 2d3v_A            3 LSKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWD---TQNPLEPKNKARFSIPSMTE-HHAGRYRCY   76 (196)
T ss_dssp             CCBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSE---EECCCSSTTEEEEEESSCCG-GGCEEEEEE
T ss_pred             CCCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcc---cccccCCccccEEEeccCCh-hHCeEEEEE
Confidence            346777766664 7889999999999887655 89999998766321   00000011345599999998 999999999


Q ss_pred             eeeCCCce-EeeEEEEEEec
Q psy2442          88 AENGVGDA-VSAEASLTVYE  106 (111)
Q Consensus        88 ~~~~~~~~-~~~~~~l~~~~  106 (111)
                      +.|..+.. .+..+.|.|.+
T Consensus        77 a~n~~g~~~~s~~~~l~V~~   96 (196)
T 2d3v_A           77 YYSPAGWSEPSDPLELVVTG   96 (196)
T ss_dssp             EEETTEECBCCCCEEEEEEC
T ss_pred             EeCCCCcCCcCccEEEEecC
Confidence            99876521 13445566655

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.36  E-value=1.4e-11  Score=66.81  Aligned_cols=86  Identities=17%  Similarity=0.181  Sum_probs=62.8

Q ss_pred             EecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442           6 RFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus         6 ~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      .+..+|.+...+.. .+..|++++|.|.+.+ +.+.+.|++++...        ..    ....|.|.++.. .|+|.|.
T Consensus         4 ~~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~--------~~----~~~~L~i~~v~~-~D~G~Y~   68 (184)
T 2gi7_A            4 GPLPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR--------YQ----DQAVLFIPAMKR-SLAGRYR   68 (184)
T ss_dssp             CCBCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC--------EE----SSSEEEESSCCG-GGCEEEE
T ss_pred             CCCCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc--------cC----cccEEEECcCCh-hhCceEE
Confidence            34567777766664 7889999999999877 67799999987641        11    344589999998 9999999


Q ss_pred             EEeeeCCCc-eEeeEEEEEEec
Q psy2442          86 CVAENGVGD-AVSAEASLTVYE  106 (111)
Q Consensus        86 c~~~~~~~~-~~~~~~~l~~~~  106 (111)
                      |.+.|..|. ..+..+.|.+.+
T Consensus        69 C~a~n~~g~~~~s~~~~l~V~~   90 (184)
T 2gi7_A           69 CSYQNGSLWSLPSDQLELVATG   90 (184)
T ss_dssp             EEEEETTEEBCCCCCEEEEEES
T ss_pred             EEEEcCCCccCCCCCEEEEecC
Confidence            999997642 113345555543

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.36  E-value=1.6e-11  Score=69.69  Aligned_cols=96  Identities=17%  Similarity=0.249  Sum_probs=64.5

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCC
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVR   76 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~   76 (111)
                      ++.+...+..+.+..|++++|.|.+.+.+.+.+.|++.  +..+.           ....++...... ....|.|.++.
T Consensus       138 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~  216 (256)
T 3umt_A          138 DIQLTQSPSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSG-SDYSLTISSLE  216 (256)
T ss_dssp             CCCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEET-TEEEEEECSCC
T ss_pred             ccEEEcCCCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCC-CEEEEEECCCC
Confidence            56666667777889999999999999988889999984  22111           012344433211 33459999999


Q ss_pred             CCCCCeEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          77 HARDDAVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      . .|+|.|.|.+.+..+........|.|.+.
T Consensus       217 ~-~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~  246 (256)
T 3umt_A          217 S-EDFVDYYCLQYASSPPTFGGGTKLEIKRA  246 (256)
T ss_dssp             G-GGCSEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             h-hHCEEEEEEEeeCCCcEECCCEEEEEECC
Confidence            8 99999999998864433233455666543

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.36  E-value=1.5e-11  Score=68.18  Aligned_cols=94  Identities=20%  Similarity=0.372  Sum_probs=59.9

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEE-eccCCCeEEEEEC-CeeccCCCCceEEE-eCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKN-GKRVSGTQSRYMVQ-EFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~-~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      |.+...+. ..+..|+.+.|.|.+ .+.|.+.+.|+++ +..+... ...... ..++....+.+..+.. .|.|.|.|.
T Consensus       112 p~i~~~~~-~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~v~~-~d~G~Y~C~  188 (222)
T 4i0k_A          112 PSMTLEPN-KDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGN-VTTSQMANERGLFDVHSVLRVVL-GANGTYSCL  188 (222)
T ss_dssp             CEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSE-EEEEEEECTTSCEEEEEEEEEEC-CTTCEEEEE
T ss_pred             CcEEeCCC-ceecCCceEEEEEecccccCCCeEEEEcCCCccCCCC-cceeEEcCCCCeEEEEEEEEEEe-CCCCEEEEE
Confidence            44443332 356789999999998 7888899999984 4443321 111111 1111223367888888 999999999


Q ss_pred             eeeCCCceEeeEEEEEEecCC
Q psy2442          88 AENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        88 ~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      +.|..|.. .....+.|.++|
T Consensus       189 a~n~~g~~-~~~~~l~V~~~p  208 (222)
T 4i0k_A          189 VRNPVLQQ-DAHGSVTITGQP  208 (222)
T ss_dssp             EEETTTTE-EEEEEEECCC--
T ss_pred             EECCCCCC-ceEEEEEEeCCc
Confidence            99999874 777777776655

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.35  E-value=4.3e-11  Score=59.74  Aligned_cols=78  Identities=21%  Similarity=0.295  Sum_probs=56.1

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCe--e---cc--------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK--R---VS--------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~---~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.+..+.+..|++++|.|...+.+.+.+.|++...  .   +.        ....++...... ....|.|.++.. +
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~-~   81 (108)
T 1jhl_L            4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSG-TDFTLTISSLEP-E   81 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESS-SEEEEEECSCCT-T
T ss_pred             eeccCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecC-CEEEEEECCCCH-H
Confidence            3455666788999999999999988888999998531  1   10        112455544311 334599999998 9


Q ss_pred             CCeEEEEEeeeCC
Q psy2442          80 DDAVYECVAENGV   92 (111)
Q Consensus        80 d~g~y~c~~~~~~   92 (111)
                      |+|.|.|.+.|..
T Consensus        82 DsG~Y~C~~~n~~   94 (108)
T 1jhl_L           82 DFAMYICQQHNEY   94 (108)
T ss_dssp             CCSEEEEEECSSS
T ss_pred             HCEEEEEEEccCC
Confidence            9999999998863

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.35  E-value=7.5e-13  Score=72.63  Aligned_cols=97  Identities=23%  Similarity=0.411  Sum_probs=67.5

Q ss_pred             eEEecCCCeeEEcCcceeeecCCcEEEEEEE-eccCCCeEEEEECCeeccCCCC--------ceEEEeCCCCCeEEEEcc
Q psy2442           4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQS--------RYMVQEFPPGGSLLRIEP   74 (111)
Q Consensus         4 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~   74 (111)
                      .|.|..+|.+........+..|+.+.|.|.+ .+.|.+.+.|++++..+.....        ++....   ....|.+.+
T Consensus       101 ~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~  177 (209)
T 1nbq_A          101 KLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNP---TTGELVFDP  177 (209)
T ss_dssp             ECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCT---TTCCEEESS
T ss_pred             EEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcC---CcceEEEEe
Confidence            4556666665444444567889999999996 8889999999999887753211        111110   234589999


Q ss_pred             CCCCCCCeEEEEEeeeCCCce-EeeEEEEEE
Q psy2442          75 VRHARDDAVYECVAENGVGDA-VSAEASLTV  104 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~~~~~-~~~~~~l~~  104 (111)
                      +.. .|.|.|.|.+.|..|.. .+..+.|.|
T Consensus       178 ~~~-~d~G~Y~C~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          178 LSA-SDTGEYSCEARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             CCG-GGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             ccc-cCCeEEEEEEeCCcCcccccccEEEEE
Confidence            998 99999999999998864 233444443

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.35  E-value=2.1e-11  Score=65.09  Aligned_cols=90  Identities=18%  Similarity=0.244  Sum_probs=64.7

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEe-ccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      ..|.|..++.+...+ ...+..|+.+.|.|.+. +.+.+.+.|++++..+...       .   ....|.+..+.. .|.
T Consensus        79 ~~l~v~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-------~---~~~~L~i~~v~~-~d~  146 (170)
T 3ry4_A           79 VHLTVLFEWLVLQTP-HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS-------H---LDPTFSIPQANH-SHS  146 (170)
T ss_dssp             EEEEEECCSEEEECS-CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE-------S---SCCEEEESSCCG-GGC
T ss_pred             EEEEEECCceEecCC-CceeecCCeEEEEEECCCCCCCceEEEEECCeEcccc-------C---CCCeEEEEeccc-cCC
Confidence            456677666554444 35677899999999994 4555789999988875321       0   234488999998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEE
Q psy2442          82 AVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      |.|.|.+.|..|...+..+.|.|
T Consensus       147 G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          147 GDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEEEEeCcCccccccEEEEE
Confidence            99999999988753355555544

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.35  E-value=2e-11  Score=67.06  Aligned_cols=93  Identities=17%  Similarity=0.263  Sum_probs=67.1

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeec-----------cCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV-----------SGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .+...+..+.+..|+.+.|.|...+.+.+.+.|++++..+           .....++...    . ..|.|.++.. .|
T Consensus         3 ~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~-~~L~i~~v~~-~D   76 (212)
T 1f97_A            3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS----S-SGITFSSVTR-KD   76 (212)
T ss_dssp             EEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE----T-TEEEESCCCG-GG
T ss_pred             eEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee----c-eeEEEcccCc-cc
Confidence            3445566678899999999999998888899999876542           1112344332    2 4589999998 99


Q ss_pred             CeEEEEEeeeCCCc-eEeeEEEEEEecCCCC
Q psy2442          81 DAVYECVAENGVGD-AVSAEASLTVYEGEEK  110 (111)
Q Consensus        81 ~g~y~c~~~~~~~~-~~~~~~~l~~~~~~~~  110 (111)
                      .|.|.|.+.+..|. .....+.|.+..+|..
T Consensus        77 ~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~  107 (212)
T 1f97_A           77 NGEYTCMVSEEGGQNYGEVSIHLTVLVPPSK  107 (212)
T ss_dssp             CEEEEEEEEETTSSSEEEEEEEEEEEBCCCC
T ss_pred             CeEEEEEEEccCCCcccEEEEEEEEEcCCCC
Confidence            99999999997652 1255677777776643

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.35  E-value=3.5e-11  Score=62.35  Aligned_cols=94  Identities=18%  Similarity=0.312  Sum_probs=62.1

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Cee---ccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKR---VSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      ..+.+.+..+.+..|++++|.|...+.  +.+.|++.  +..   +.....++...... ....|.|.+++. +|+|.|.
T Consensus        18 ~~v~q~p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~-~~~~L~I~~~~~-~DsG~Y~   93 (133)
T 3khq_A           18 SQIWQHPRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQNG-SVYTLTIQNIQY-EDNGIYF   93 (133)
T ss_dssp             CSEEEECSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEEET-TEEEEEECSCCG-GGCEEEE
T ss_pred             CceEEcCceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEcCC-CEEEEEECCCCh-HHCEEEE
Confidence            355666777889999999999999876  78999986  222   11123566654322 334599999998 9999999


Q ss_pred             EEeeeCCCc---eEeeEEEEEEecCC
Q psy2442          86 CVAENGVGD---AVSAEASLTVYEGE  108 (111)
Q Consensus        86 c~~~~~~~~---~~~~~~~l~~~~~~  108 (111)
                      |.+.|..|.   .......|.|.+.|
T Consensus        94 C~a~n~~g~~~~~~g~gt~L~V~~~p  119 (133)
T 3khq_A           94 CKQKCDSANHNVTDSCGTELLVLGFS  119 (133)
T ss_dssp             EEESSCC-------CCCEEEEEC---
T ss_pred             EEEEeCCCCcceeECCCEEEEEEecc
Confidence            999887541   01233455555443

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.35  E-value=3.8e-11  Score=75.71  Aligned_cols=88  Identities=18%  Similarity=0.353  Sum_probs=68.3

Q ss_pred             eeEEecCCC-eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           3 RKVRFLDPP-EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         3 ~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      +.|.|..+| .+...+....+..|+.+.|.|.+.+.|.+.+.|+++|..+..             ...|.+.++.. .|.
T Consensus       551 ~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~-------------~~~L~i~~~~~-~d~  616 (642)
T 1e07_A          551 VTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQH-------------TQVLFIAKITP-NNN  616 (642)
T ss_pred             EEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECcc-------------CceEEECcccc-cCC
Confidence            467776544 344556667888999999999999999999999999887642             12378888888 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      |.|.|.+.|..|.. .....+.|.
T Consensus       617 G~Y~C~a~N~~G~~-~~s~~l~V~  639 (642)
T 1e07_A          617 GTYACFVSNLATGR-NNSIVKSIT  639 (642)
T ss_pred             eEEEEEEEecccCc-ceeEEEEEE
Confidence            99999999999874 555555543

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.34  E-value=7.8e-11  Score=67.62  Aligned_cols=96  Identities=26%  Similarity=0.431  Sum_probs=71.2

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEE-CCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK-NGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      .+|.+...+....+..|+.+.|.|.+.+.|. .+.|++ ++..+... .++...... ....|.|.++.. .|.|.|.|.
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~-~~~~~~~~~-~~~~L~i~~~~~-~D~G~Y~C~   78 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIIST-QRVVVQKEG-VRSRLTIYNANI-EDAGIYRCQ   78 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCB-TTEEEEEET-TEEEEEECSCCG-GGCEEEEEE
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCC-CcEEEecCC-CEEEEEEccCCc-ccCEEEEEE
Confidence            4677777888888999999999999998764 899998 55555432 455443211 335699999998 999999999


Q ss_pred             eeeCCCceEeeEEEEEEecCC
Q psy2442          88 AENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        88 ~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      +.|..|......+.+.+..++
T Consensus        79 ~~n~~g~~~~~~~~l~v~~~~   99 (291)
T 2wim_A           79 ATDAKGQTQEATVVLEIYQKL   99 (291)
T ss_dssp             EECSSSCEEEEEEEEEEECCC
T ss_pred             EecccCceEEEEEEEEecCCc
Confidence            999887654556666666554

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.34  E-value=1.9e-11  Score=67.72  Aligned_cols=103  Identities=13%  Similarity=0.109  Sum_probs=60.9

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC-CeeccCCCCceEEEeC-CCCCeEEEEccCCCCCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN-GKRVSGTQSRYMVQEF-PPGGSLLRIEPVRHARD   80 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~d   80 (111)
                      ++|.|..++..........+..|+.+.|.|.+.+.|.+.+.|+++ +..+... ........ ++.........+.. .|
T Consensus       109 ~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~v~~-~d  186 (222)
T 3sbw_C          109 ITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGK-TTTTNSKREEKLFNVTSTLRINT-TT  186 (222)
T ss_dssp             EEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCE-EEEEECC----CEEEEEEEEEEC-CT
T ss_pred             EEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCc-cceEEEcCCCCCEEEEEEEEEec-cC
Confidence            345565444322111112456799999999999999999999998 5444321 11111110 00111122224455 88


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          81 DAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .|.|.|.+.|..|.. .....+.+.+.|
T Consensus       187 ~g~Y~C~a~n~~g~~-~~~~~l~v~~~p  213 (222)
T 3sbw_C          187 NEIFYCTFRRLDPEE-NHTAELVIPELP  213 (222)
T ss_dssp             TCEEEEEEEETTTTE-EEEEEEECCCC-
T ss_pred             CcEEEEEEEeCccce-eeEEEEEecCCc
Confidence            999999999999874 777777766444

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.34  E-value=6.9e-11  Score=68.64  Aligned_cols=94  Identities=22%  Similarity=0.341  Sum_probs=67.9

Q ss_pred             CCCeeEEcCcc-eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCC----ceEEEeCCC------CCeEEEEccCCC
Q psy2442           9 DPPEITLRPRN-QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS----RYMVQEFPP------GGSLLRIEPVRH   77 (111)
Q Consensus         9 ~~p~~~~~~~~-~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~----~~~~~~~~~------~~~~l~~~~~~~   77 (111)
                      .+|.+...+.. +.+..|+.+.|.|.+.+.|.+.+.|+++|..+.....    .+.......      ....|.|.++..
T Consensus       207 ~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~  286 (315)
T 1itb_B          207 TRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIES  286 (315)
T ss_dssp             CCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCG
T ss_pred             CCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCH
Confidence            56666544432 4678999999999999999999999999998865421    111111000      123599999998


Q ss_pred             CCC-CeEEEEEeeeCCCceEeeEEEEEE
Q psy2442          78 ARD-DAVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        78 ~~d-~g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                       .| .|.|.|.+.|..|.. ...+.|.+
T Consensus       287 -~d~~G~Y~C~a~N~~G~~-~~~~~l~v  312 (315)
T 1itb_B          287 -RFYKHPFTCFAKNTHGID-AAYIQLIY  312 (315)
T ss_dssp             -GGGTSCEEEEEECTTCCE-EEEEEEEC
T ss_pred             -HHcCCceEEEEecCCCce-eEEEEEEe
Confidence             99 999999999999975 66766655

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.34  E-value=1.1e-11  Score=71.27  Aligned_cols=103  Identities=19%  Similarity=0.283  Sum_probs=70.5

Q ss_pred             eeEEecC----CCeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCC-CCCeEEEEccCC
Q psy2442           3 RKVRFLD----PPEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFP-PGGSLLRIEPVR   76 (111)
Q Consensus         3 ~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~   76 (111)
                      ..|.|..    +|.+...+....+..|+.+.|.|.+.+.+.+ .+.|++++..+... ......... .....|.|.++.
T Consensus       175 ~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~  253 (292)
T 4dkd_C          175 IRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIP-QQSDFHNNRYQKVLTLNLDQVD  253 (292)
T ss_dssp             EEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCC-BEEEEETTEEEEEEEEEESSCC
T ss_pred             EEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccC-ccceeccceeeeEEEEEECccC
Confidence            4567765    7888777777677899999999999886654 67788887765422 111111000 012358999999


Q ss_pred             CCCCCeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          77 HARDDAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      . .|.|.|.|.+.|..|.. ...+.|.|.+..
T Consensus       254 ~-~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~~  283 (292)
T 4dkd_C          254 F-QHAGNYSCVASNVQGKH-STSMFFRVVESA  283 (292)
T ss_dssp             T-TSCEEEEEEEECSSCEE-EEEEEECC----
T ss_pred             h-hcCeEEEEEEecCCCCc-eeEEEEEEeeCC
Confidence            8 99999999999999874 777777766543

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.33  E-value=7.1e-12  Score=69.86  Aligned_cols=86  Identities=17%  Similarity=0.171  Sum_probs=52.7

Q ss_pred             ceeeecCCcEEEEEEEec-cCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442          19 NQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS   97 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~   97 (111)
                      ...+..|+.+.+.|.+.+ .|.|.+.|++++...............++....+.+..+.. .|.|.|.|.+.|..|.. .
T Consensus       127 ~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~-~d~G~YtC~a~N~~g~~-~  204 (226)
T 4f80_A          127 DVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRG-SSGEGVSCTIRSSLLGL-E  204 (226)
T ss_dssp             EEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC-----CEEEEEEETTTTE-E
T ss_pred             eeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEech-hcCcEEEEEEEeCCCCe-E
Confidence            346778999999999887 58889999986544322211111221111112234445666 89999999999999874 6


Q ss_pred             eEEEEEEec
Q psy2442          98 AEASLTVYE  106 (111)
Q Consensus        98 ~~~~l~~~~  106 (111)
                      ....|.+.+
T Consensus       205 ~~~~v~v~e  213 (226)
T 4f80_A          205 KTASISIAD  213 (226)
T ss_dssp             EEEEECCCT
T ss_pred             EEEEEEECC
Confidence            777776654

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.33  E-value=1.5e-11  Score=71.23  Aligned_cols=78  Identities=18%  Similarity=0.274  Sum_probs=61.0

Q ss_pred             eeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEee
Q psy2442          20 QAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSA   98 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~   98 (111)
                      ..+..|+.+.|.|.+.+.|.+ .+.|++++..+... .++....   ....|.|.++.. .|.|.|.|.+.|..|.. ..
T Consensus       231 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~-~~~~~~~---~~~~L~I~~v~~-~d~G~Y~C~a~N~~G~~-~~  304 (312)
T 2y23_A          231 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD-EKHDFKD---GICTLLITEFSK-KDAGIYEVILKDDRGKD-KS  304 (312)
T ss_dssp             EEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEE-CCC-------CEEEEEECSCSG-GGCEEEEEEEESTTCCE-EE
T ss_pred             EEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCC-CcEEEEC---CEEEEEECcCCH-HHCEEEEEEEEcCCCce-ee
Confidence            577899999999999999888 99999999887632 3333322   335699999998 99999999999999874 66


Q ss_pred             EEEEE
Q psy2442          99 EASLT  103 (111)
Q Consensus        99 ~~~l~  103 (111)
                      .+.|.
T Consensus       305 ~~~l~  309 (312)
T 2y23_A          305 RLKLV  309 (312)
T ss_dssp             EEEEC
T ss_pred             eeEEE
Confidence            66554

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.33  E-value=5.9e-11  Score=65.84  Aligned_cols=80  Identities=20%  Similarity=0.263  Sum_probs=62.3

Q ss_pred             eeeecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442          20 QAVKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS   97 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~   97 (111)
                      +.+..|+++.|.|.+ +.+.|  .+.|.+.+..+    .+.....   ....|.|.+++. .|.|.|.|.+.|..+. ..
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l----~~~~~~~---~~~~L~I~~v~~-~d~G~Y~C~a~n~~~~-~~   86 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL----GAVQSDT---GRSVLTVRNASL-SAAGTRVCVGSCGGRT-FQ   86 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT----CCEEEES---SEEEEEECSCCG-GGCEEEEEEEEETTEE-EE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc----CcEEecC---CccEEEECccCc-ccCceEEEEEEeCCCc-eE
Confidence            588899999999999 87777  99999854433    2222221   456699999998 9999999999998765 36


Q ss_pred             eEEEEEEecCCC
Q psy2442          98 AEASLTVYEGEE  109 (111)
Q Consensus        98 ~~~~l~~~~~~~  109 (111)
                      ..+.|.|..+|.
T Consensus        87 ~~~~ltV~~~P~   98 (210)
T 1gsm_A           87 HTVQLLVYAFPN   98 (210)
T ss_dssp             EEEEEEEEBCCS
T ss_pred             EEEEEEEEecCC
Confidence            788888888775

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.32  E-value=1.1e-11  Score=75.98  Aligned_cols=83  Identities=30%  Similarity=0.501  Sum_probs=63.3

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccC--CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSG--TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      +....+..|+++.+.|.+.|.|.|.+.|++++..+..  ...++...    ....+.+..+.. .|+|.|.|.+.|..|.
T Consensus       392 ~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~-~d~G~Y~C~a~N~~g~  466 (477)
T 2id5_A          392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVF----PDGTLEVRYAQV-QDNGTYLCIAANAGGN  466 (477)
T ss_dssp             CEEEEEETTCCEEECCCEEEESCCEEEEECTTSCBC-------CEEC----TTSCEEESSCCS-TTCEEEEEEEEETTEE
T ss_pred             cccEEEeCCCeEEEEEeccccCCCEEEEEECCccccccCCCceEEeC----CCCEEEEeeCCh-HHCEEEEEEEEeCCCc
Confidence            3556788999999999999999999999998877642  12333332    223499999998 9999999999999887


Q ss_pred             eEeeEEEEEEe
Q psy2442          95 AVSAEASLTVY  105 (111)
Q Consensus        95 ~~~~~~~l~~~  105 (111)
                      . ...+.+.|.
T Consensus       467 ~-~~~~~l~V~  476 (477)
T 2id5_A          467 D-SMPAHLHVR  476 (477)
T ss_dssp             E-EEEEEEEEE
T ss_pred             E-EEEEEEEEe
Confidence            4 777777664

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.32  E-value=5.8e-11  Score=65.47  Aligned_cols=92  Identities=22%  Similarity=0.282  Sum_probs=61.8

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--eec-----------cCCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KRV-----------SGTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.+..+.+..|+.+.|.|.+.+.+.+.+.|++.+  ..+           .....++...... ....|.|.++.. .
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~-~   81 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG-TDFTLSINSVET-E   81 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEESSCCG-G
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCC-CEEEEEECCCCh-h
Confidence            344566678899999999999999888899999743  111           0111355444311 334699999998 9


Q ss_pred             CCeEEEEEeeeCCCceEeeEEEEEEec
Q psy2442          80 DDAVYECVAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        80 d~g~y~c~~~~~~~~~~~~~~~l~~~~  106 (111)
                      |.|.|.|.+.|..+........+.+..
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~  108 (213)
T 3d9a_L           82 DFGMYFCQQSNSWPYTFGGGTKLEIKR  108 (213)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             hCEEEEEeeecCCcceeCCCEEEEEec
Confidence            999999999987654222233455543

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.32  E-value=1.5e-10  Score=64.71  Aligned_cols=93  Identities=19%  Similarity=0.275  Sum_probs=62.2

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--e-----------eccCCCCceEEEeCCCCCeEEEEccCCC
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--K-----------RVSGTQSRYMVQEFPPGGSLLRIEPVRH   77 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~   77 (111)
                      +.+...+..+.+..|+++.|.|...+.+.+.+.|++..  .           .......++...... ....|.|.+++.
T Consensus        25 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~  103 (237)
T 3sob_L           25 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSG-TDFTLTISSLQP  103 (237)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCG
T ss_pred             ceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCC-CEEEEEECCCCh
Confidence            34555566778999999999999988888899999832  1           111112455444211 345599999998


Q ss_pred             CCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          78 ARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        78 ~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                       .|+|.|.|.+.+..+........+.|.
T Consensus       104 -~D~G~Y~C~~~~~~~~~~~~~~~l~V~  130 (237)
T 3sob_L          104 -EDFATYYCQQSYTTPPTFGQGTKVEIK  130 (237)
T ss_dssp             -GGCEEEEEEECSSSSCEECCCEEEEEE
T ss_pred             -hhCeEEEEeeccCCceEEcCcEEEEEe
Confidence             999999999987654222233344443

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.32  E-value=1.9e-11  Score=68.54  Aligned_cols=84  Identities=33%  Similarity=0.533  Sum_probs=63.6

Q ss_pred             cceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCC--ceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442          18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS--RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      ..+.+..|+.+.|.|.+.+.+.+.+.|++++..+.....  ......   ....|.|.++.. .|.|.|.|.+.|..+..
T Consensus        23 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~-~d~G~Y~C~~~~~~~~~   98 (241)
T 3grw_A           23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH---QQWSLVMESVVP-SDRGNYTCVVENKFGSI   98 (241)
T ss_dssp             CEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEG---GGTEEEECSCCG-GGCEEEEEEEEETTEEE
T ss_pred             cceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeec---cceEEEEEeCCc-ccCEEEEEEEeecCCce
Confidence            346788999999999999988889999999988753211  112221   334589999998 99999999999987753


Q ss_pred             EeeEEEEEEec
Q psy2442          96 VSAEASLTVYE  106 (111)
Q Consensus        96 ~~~~~~l~~~~  106 (111)
                       ...+.+.+..
T Consensus        99 -~~~~~l~V~~  108 (241)
T 3grw_A           99 -RQTYTLDVLE  108 (241)
T ss_dssp             -EEEEEEEEEC
T ss_pred             -EEEEEEEEec
Confidence             5666666654

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=99.32  E-value=3.4e-11  Score=61.29  Aligned_cols=77  Identities=21%  Similarity=0.313  Sum_probs=55.1

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--eec----c-------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KRV----S-------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~----~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.+..+.+..|++++|.|...+.+.+.+.|++..  ..+    .       ....|+...... ....|.|.+++. +
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~-~~~~L~I~~v~~-~   81 (120)
T 1mqk_L            4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSG-TQFSLKINSLLP-E   81 (120)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCG-G
T ss_pred             eEecCCeEEEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccC-CEEEEEECCCCH-H
Confidence            345566678899999999999988777789999843  211    0       112455543211 334599999998 9


Q ss_pred             CCeEEEEEeeeC
Q psy2442          80 DDAVYECVAENG   91 (111)
Q Consensus        80 d~g~y~c~~~~~   91 (111)
                      |+|.|.|.+.+.
T Consensus        82 DsG~Y~C~~~~~   93 (120)
T 1mqk_L           82 DFGSYYCQHHYG   93 (120)
T ss_dssp             GCEEEEEEECSS
T ss_pred             HCEEEEEEEEeC
Confidence            999999999874

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.32  E-value=1.1e-11  Score=69.15  Aligned_cols=94  Identities=15%  Similarity=0.089  Sum_probs=63.0

Q ss_pred             ecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCe--EEEEccCCCCCCCeEE
Q psy2442           7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS--LLRIEPVRHARDDAVY   84 (111)
Q Consensus         7 v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~d~g~y   84 (111)
                      +..+|.+...+. ..+..|++++|.|.+.+ +.+.+.|+++|..+...........   ...  .|.|.++.. .|+|.|
T Consensus         6 ~~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~---~~~~~~L~I~~v~~-~D~G~Y   79 (218)
T 1uct_A            6 DFPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFW---NETDPEFVIDHMDA-NKAGRY   79 (218)
T ss_dssp             GSCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC-------CCCEEEECSCCG-GGCEEE
T ss_pred             CCCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCC---cceeeEEEEccccc-ccCEEE
Confidence            345677776666 47889999999999877 5678999998765432111100000   223  699999998 999999


Q ss_pred             EEEeeeCCCce-EeeEEEEEEec
Q psy2442          85 ECVAENGVGDA-VSAEASLTVYE  106 (111)
Q Consensus        85 ~c~~~~~~~~~-~~~~~~l~~~~  106 (111)
                      .|.+.|..+.. .+..+.|.|.+
T Consensus        80 ~C~a~n~~~~~~~s~~~~l~V~~  102 (218)
T 1uct_A           80 QCQYRIGHYRFRYSDTLELVVTG  102 (218)
T ss_dssp             EEEEEETTTEEEECCCEEEEEEC
T ss_pred             EEEEEcCCCceeecCCEEEEEcC
Confidence            99999976521 23445666654

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.31  E-value=4.1e-11  Score=70.21  Aligned_cols=96  Identities=21%  Similarity=0.240  Sum_probs=66.9

Q ss_pred             ecCCCeeEEcCcceeeecCCcEEEEEEEeccC-CCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442           7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus         7 v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      +..+|.+........+..|+.+.|.|.+.+.| .+.+.|++++..+.....++...     ...|.|.++.. .|.|.|.
T Consensus       125 ~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~-----~~~L~I~~v~~-~D~G~Y~  198 (329)
T 3oq3_B          125 IRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS-----GQNLIIHNPEL-EDSGRYD  198 (329)
T ss_dssp             ECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE-----TTEEEECSCCG-GGCEEEE
T ss_pred             EcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC-----CCEEEEeecCh-hhCEEEE
Confidence            33444443333334466799999999999988 88999999999885443454433     24489999998 9999999


Q ss_pred             EEeeeC--CCce---EeeEEEEEEecCC
Q psy2442          86 CVAENG--VGDA---VSAEASLTVYEGE  108 (111)
Q Consensus        86 c~~~~~--~~~~---~~~~~~l~~~~~~  108 (111)
                      |.+.|.  .|..   ....+.+.|..++
T Consensus       199 C~a~n~~~~g~~~~~~s~~~~l~V~~~~  226 (329)
T 3oq3_B          199 CYVHYDDVRIKNDIVVSRCKILTVIPSQ  226 (329)
T ss_dssp             EEEEECCTTSSSCEEEEEEEEEEEECCC
T ss_pred             EEEEecccCCCceeEEEeeEEEEEECCC
Confidence            999986  5432   1223556666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.31  E-value=5.6e-12  Score=76.84  Aligned_cols=93  Identities=26%  Similarity=0.439  Sum_probs=65.4

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeec-cCC--CCceEEEeCCCCCeEEEEccCCCCCCCeEEEE
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV-SGT--QSRYMVQEFPPGGSLLRIEPVRHARDDAVYEC   86 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~-~~~--~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c   86 (111)
                      +|.+...+....+..|+.+++.|.+.  |.|.+.|++.+... ...  ..++...    ....|.+.+++. .|+|.|.|
T Consensus       352 ~P~i~~~~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~~~~----~~g~L~i~~v~~-~D~G~Y~C  424 (452)
T 3zyi_A          352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVL----NDGTLNFSHVLL-SDTGVYTC  424 (452)
T ss_dssp             CCCCSBCCCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSCEEC----TTSCEECSSCCT-TCCEEEEE
T ss_pred             CcccccccccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCEEEC----CCCeEEEeecCH-HHCEEEEE
Confidence            45555566667888999999999987  88899999854433 211  1243332    223499999998 99999999


Q ss_pred             EeeeCCCceEeeEEEEEEecCCCC
Q psy2442          87 VAENGVGDAVSAEASLTVYEGEEK  110 (111)
Q Consensus        87 ~~~~~~~~~~~~~~~l~~~~~~~~  110 (111)
                      .+.|..|.. ...+.+.|.+.+.+
T Consensus       425 ~a~N~~G~~-~~~~~l~v~~~~~~  447 (452)
T 3zyi_A          425 MVTNVAGNS-NASAYLNVSTAGTH  447 (452)
T ss_dssp             EEECSSCEE-EEEEEEEC------
T ss_pred             EEEcCCCcE-EEEEEEEEEccccc
Confidence            999999975 77888887766543

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.31  E-value=5e-11  Score=67.54  Aligned_cols=96  Identities=23%  Similarity=0.307  Sum_probs=63.5

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCC----eEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEE
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIP----VIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRI   72 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~----~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~   72 (111)
                      ++.+...+....+..|++++|.|.+.+.+.+    .+.|++.  +..+.           ....++...... ....|.|
T Consensus       133 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I  211 (253)
T 3uzq_A          133 ELVMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSR-TDFTLTI  211 (253)
T ss_dssp             -CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEE
T ss_pred             cceEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCC-CEEEEEE
Confidence            4566666777788999999999999887766    8999984  22111           011344332211 3345999


Q ss_pred             ccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          73 EPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        73 ~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      .++.. .|+|.|.|.+.|..+........|.|...
T Consensus       212 ~~v~~-~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~  245 (253)
T 3uzq_A          212 NPVEA-DDVATYFCQRSNEVPWTFGGGTKLEIKRP  245 (253)
T ss_dssp             SSCCG-GGCEEEEEEECSSSSCCBCCCEEEEECCC
T ss_pred             CCCCH-HHCEEEEEEEccCCCcEECCCEEEEEcCC
Confidence            99998 99999999998855432233455666543

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.31  E-value=1.6e-11  Score=73.34  Aligned_cols=100  Identities=24%  Similarity=0.436  Sum_probs=69.9

Q ss_pred             EecCCCeeEE-cCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCC-CCceEEEeCCCCCeEEEEc----cCCCCC
Q psy2442           6 RFLDPPEITL-RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGT-QSRYMVQEFPPGGSLLRIE----PVRHAR   79 (111)
Q Consensus         6 ~v~~~p~~~~-~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~----~~~~~~   79 (111)
                      .+..+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++++..+... ..++....   ....+.+.    ++.. .
T Consensus        12 ~~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~---~~~~l~i~~~~~~~~~-~   87 (404)
T 3p3y_A           12 ELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRR---RSGTLVIDFRSGGRPE-E   87 (404)
T ss_dssp             -CCCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCS---SSCCCBCCCTTTCCTT-S
T ss_pred             hccCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEec---CCceEEEEeccCCCCc-c
Confidence            4567787764 456678889999999999999999999999999876422 12222211   12223332    6666 8


Q ss_pred             CCeEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          80 DDAVYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        80 d~g~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      |.|.|.|.+.|..|...+..+.+.+...|.
T Consensus        88 D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~  117 (404)
T 3p3y_A           88 YEGEYQCFARNKFGTALSNRIRLQVSKSPL  117 (404)
T ss_dssp             SCEEEEEEEECSSCEEEEEEEEEEECCCCC
T ss_pred             CCEEEEEEEEcCCCeEeeeeEEEEEeccCc
Confidence            999999999998876544667777766553

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.31  E-value=2.7e-11  Score=70.86  Aligned_cols=91  Identities=31%  Similarity=0.437  Sum_probs=65.5

Q ss_pred             cceeeecCCcEEEEEEEeccCCCeEEEEE----CCeeccCCCC-ceEEEeC------CCCCeEEEEccCCCCCCCeEEEE
Q psy2442          18 RNQAVKAGGITSFYCIARGDPIPVIQWRK----NGKRVSGTQS-RYMVQEF------PPGGSLLRIEPVRHARDDAVYEC   86 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~----~~~~~~~~~~-~~~~~~~------~~~~~~l~~~~~~~~~d~g~y~c   86 (111)
                      ....+..|+.+.|.|.+.+.|.+.+.|++    ++..+..... .+.....      +.....|.|.++.. .|.|.|.|
T Consensus       230 ~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C  308 (334)
T 1ry7_B          230 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTF-EDAGEYTC  308 (334)
T ss_dssp             CCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCT-TSCSEEEE
T ss_pred             CceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCH-HHCEEEEE
Confidence            45678889999999999999999999999    5555432211 1111100      00113599999998 99999999


Q ss_pred             EeeeCCCceEeeEEEEEEecCCCC
Q psy2442          87 VAENGVGDAVSAEASLTVYEGEEK  110 (111)
Q Consensus        87 ~~~~~~~~~~~~~~~l~~~~~~~~  110 (111)
                      .+.|..|.. ...+.|.|...+.+
T Consensus       309 ~a~N~~G~~-~~~~~l~V~~~~~~  331 (334)
T 1ry7_B          309 LAGNSIGFS-HHSAWLVVLPAEEE  331 (334)
T ss_dssp             EEEESSCCE-EEEEEEEEECSCCC
T ss_pred             EEeCCCCeE-EEEEEEEEEECCCC
Confidence            999999985 77888888766543

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.30  E-value=5.4e-11  Score=60.32  Aligned_cols=89  Identities=17%  Similarity=0.289  Sum_probs=60.7

Q ss_pred             cCcceeeecCCcEEEEEEEecc--CCCeEEEEECCeeccC------------CCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442          16 RPRNQAVKAGGITSFYCIARGD--PIPVIQWRKNGKRVSG------------TQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      .+..+.+..|++++|.|...+.  ....+.|++.+..+..            -..|+.+.    ....|.|.+++. .|+
T Consensus         9 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~----~~~sL~I~~v~~-~D~   83 (117)
T 3q0h_A            9 TTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPG----PGLGLTLQSLTV-NDT   83 (117)
T ss_dssp             ESCCEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEEC----STTCEEECSCCG-GGC
T ss_pred             ccCCEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeC----CceEEEEeeCCh-hhC
Confidence            4555788999999999998763  2336899997643210            01344432    223499999998 999


Q ss_pred             eEEEEEeee-CCCceEeeEEEEEEecCCCC
Q psy2442          82 AVYECVAEN-GVGDAVSAEASLTVYEGEEK  110 (111)
Q Consensus        82 g~y~c~~~~-~~~~~~~~~~~l~~~~~~~~  110 (111)
                      |.|.|.+.+ ..|. ....+.|.|..+|.+
T Consensus        84 G~Y~C~v~~~~~g~-~~~~~~L~V~~pp~~  112 (117)
T 3q0h_A           84 GEYFCIYHTYPDGT-YTGRIFLEVLESSVA  112 (117)
T ss_dssp             EEEEEEEEEETTCC-EEEEEEEEEECC---
T ss_pred             EEEEEEEEECCCCC-eEEEEEEEEEccCcc
Confidence            999999765 4555 477788888888754

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.30  E-value=1.5e-10  Score=67.84  Aligned_cols=99  Identities=14%  Similarity=0.169  Sum_probs=69.3

Q ss_pred             eeEEecCCC----eeEEcCcceeeecCCcEEEEEEEeccC---CC-eEEEEECCeeccCCCCceEEE---eCCCCCeEEE
Q psy2442           3 RKVRFLDPP----EITLRPRNQAVKAGGITSFYCIARGDP---IP-VIQWRKNGKRVSGTQSRYMVQ---EFPPGGSLLR   71 (111)
Q Consensus         3 ~~l~v~~~p----~~~~~~~~~~~~~g~~~~l~c~~~~~~---~~-~~~w~~~~~~~~~~~~~~~~~---~~~~~~~~l~   71 (111)
                      +.|.|..++    .+. .+....+..|+.+.|.|.+.+.|   .+ .+.|++++..+.....+....   ........|.
T Consensus       218 ~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~  296 (329)
T 3oq3_B          218 KILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLY  296 (329)
T ss_dssp             EEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEE
T ss_pred             EEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEE
Confidence            456777666    333 55557888999999999999987   67 889999988743222222111   1000234599


Q ss_pred             EccCCCCCCCe-EEEEEeeeCCCceEeeEEEEEE
Q psy2442          72 IEPVRHARDDA-VYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        72 ~~~~~~~~d~g-~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      |.++.. .|.| .|.|.+.|..|.. ...+.|.+
T Consensus       297 I~~v~~-~D~G~~Y~C~a~N~~G~~-~~~~~l~v  328 (329)
T 3oq3_B          297 FENVTE-EYIGNTYTCRGHNYYFDK-TLTTTVVL  328 (329)
T ss_dssp             ESSCCG-GGTTCEEEEEEECSSCEE-EEEEEEEE
T ss_pred             EEeccH-HHCCCcEEEEEEecCCce-EEEEEEEe
Confidence            999998 9999 9999999999874 55665544

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.30  E-value=1.3e-10  Score=64.11  Aligned_cols=90  Identities=19%  Similarity=0.282  Sum_probs=62.0

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +..++ .+.+..|+.++|.|.+.+.+.+.+.|++.  +....           ....++...... ....|.|.++.. .
T Consensus         4 v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~-~   80 (213)
T 3mj8_L            4 LTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSG-NMATLTISKAQA-G   80 (213)
T ss_dssp             BBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-TEEEEEESSCCG-G
T ss_pred             EEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecC-CEEEEEECCCCh-h
Confidence            33445 67889999999999999888889999982  21110           012355443311 345599999998 9


Q ss_pred             CCeEEEEEeeeCCC--ceEeeEEEEEEe
Q psy2442          80 DDAVYECVAENGVG--DAVSAEASLTVY  105 (111)
Q Consensus        80 d~g~y~c~~~~~~~--~~~~~~~~l~~~  105 (111)
                      |+|.|.|.+.+..+  ........|.|.
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~  108 (213)
T 3mj8_L           81 DEADYYCQSWDGTNSAWVFGSGTKVTVL  108 (213)
T ss_dssp             GCEEEEEEEEETTTTEEEEBCCEEEEEE
T ss_pred             hCEEEEEEeccCCcceeEEcCceEEEEe
Confidence            99999999999876  222444556665

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.30  E-value=3.7e-11  Score=67.61  Aligned_cols=87  Identities=14%  Similarity=0.211  Sum_probs=60.7

Q ss_pred             eeEEecCC---CeeEE-cCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCC-----------------------
Q psy2442           3 RKVRFLDP---PEITL-RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ-----------------------   55 (111)
Q Consensus         3 ~~l~v~~~---p~~~~-~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-----------------------   55 (111)
                      +.|.|..+   +.+.. .+..+.+..|+.+.|.|.+.+.|.|.+.|++++..+....                       
T Consensus       125 ~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (250)
T 2fbo_J          125 VVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIA  204 (250)
T ss_dssp             EEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTT
T ss_pred             EEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEe
Confidence            45666654   33332 2334566779999999999998888999999987664321                       


Q ss_pred             CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          56 SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        56 ~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      .+....    ....|.|.++.. .|+|.|.|.+.|..|.
T Consensus       205 ~~~~~~----~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~  238 (250)
T 2fbo_J          205 GRASFS----GARNLVIRAAKI-TDAGRVWCELATGQGE  238 (250)
T ss_dssp             TSEEEE----TTTEEEECSCCG-GGCEEEEEEEESSSSG
T ss_pred             cccccC----CccEEEEecCCc-ccCEEEEEEecCCccc
Confidence            011000    224599999998 9999999999996653

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.30  E-value=5.3e-11  Score=65.64  Aligned_cols=82  Identities=21%  Similarity=0.237  Sum_probs=62.0

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCe-EEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      ..|.+...+....+..|+.+.|.|.+.+.+.+. +.|++++..+...            ...|.|.++.. .|+|.|.|.
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~------------~~~L~i~~v~~-~D~G~Y~C~   72 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ------------ASSYFIDAATV-DDSGEYRCQ   72 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC------------SSEEEESSCCG-GGCEEEEEE
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC------------ccEEEEecccc-cCCEEEEEE
Confidence            346666667667889999999999999887775 9999998877532            24488999998 999999999


Q ss_pred             eeeCCCceEeeEEEEEEec
Q psy2442          88 AENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        88 ~~~~~~~~~~~~~~l~~~~  106 (111)
                      +.|...   +..+.|.+..
T Consensus        73 a~n~~~---s~~~~l~V~~   88 (204)
T 3sgj_C           73 TQLSTL---SDPVQLEVHI   88 (204)
T ss_dssp             ETTSBC---CCCEEEEEEC
T ss_pred             eCCCcc---cccEEEEEec
Confidence            987432   3344555543

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.29  E-value=1.3e-10  Score=71.81  Aligned_cols=104  Identities=16%  Similarity=0.266  Sum_probs=74.1

Q ss_pred             eeEEec----CCCeeEEcCcceeeecCCcEEEEEEEeccCCCe-EEEEECCeeccCC-CCceEEEeC--CCCCeEEEEcc
Q psy2442           3 RKVRFL----DPPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGT-QSRYMVQEF--PPGGSLLRIEP   74 (111)
Q Consensus         3 ~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~-~~~~~~~~~--~~~~~~l~~~~   74 (111)
                      +.|.|.    .+|.+...+....+..|+.+.|.|.+.+.|.+. +.|++++..+... ..+......  ......|.|.+
T Consensus       200 ~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~  279 (524)
T 2ec8_A          200 FILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISS  279 (524)
T ss_dssp             EECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESS
T ss_pred             EEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECC
Confidence            445554    677877777777888999999999999988886 9999998873111 011111100  00235599999


Q ss_pred             CCCCCCCeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          75 VRHARDDAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      +.. .|.|.|.|.+.|..|.. ...+.|.|..+|
T Consensus       280 ~~~-~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~p  311 (524)
T 2ec8_A          280 ARV-NDSGVFMCYANNTFGSA-NVTTTLEVVDKG  311 (524)
T ss_dssp             CCT-TTCEEEEEEEECSSCEE-EEEEEEEEESSC
T ss_pred             CCH-HHCEEEEEEEEecCCce-EEEEEEEEeccC
Confidence            998 99999999999988874 667777776554

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.29  E-value=7.9e-11  Score=66.82  Aligned_cols=95  Identities=17%  Similarity=0.240  Sum_probs=62.0

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCC
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVR   76 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~   76 (111)
                      +.+...+....+..|++++|.|.+.+.+.+ .+.|++.  +..+.           ....++...... ....|.|.++.
T Consensus       142 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~  220 (257)
T 3gkz_A          142 IVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSG-TSYSLTISSME  220 (257)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCC
T ss_pred             eEEEcCCceEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCC-CEEEEEECCCC
Confidence            455566666788899999999999887777 8999983  22211           001344332211 33459999999


Q ss_pred             CCCCCeEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          77 HARDDAVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      . .|+|.|.|.+.+...........|.|...
T Consensus       221 ~-~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~  250 (257)
T 3gkz_A          221 A-EDAASYFCHQWSSFPFTFGSGTKLEIKRA  250 (257)
T ss_dssp             G-GGCEEEEEEECSSSSCEECCCEEEEECCC
T ss_pred             h-HHCEEEEEEEccCCceEEcCCEEEEEEeC
Confidence            8 99999999998754332233445555433

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.28  E-value=2.1e-10  Score=72.36  Aligned_cols=99  Identities=22%  Similarity=0.369  Sum_probs=70.3

Q ss_pred             eEEecC---CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           4 KVRFLD---PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         4 ~l~v~~---~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      +|.|..   +|.+.. .....+..|+.+.|.|.+.+ |.+.+.|++++..+... .++....   ....|.|.++.. .|
T Consensus       103 ~l~V~~~~~~p~i~~-~~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~-~~~~~~~---~~~~L~i~~~~~-~d  175 (642)
T 1e07_A          103 QFRVYPELPKPSISS-NNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVS-PRLQLSN---GNRTLTLFNVTR-ND  175 (642)
T ss_pred             EEEecccCCCCcEEc-cCceeEecCCcEEEEEECCC-CCeeEEEEECCeECCCC-CceEEcC---CCCEEEEeCCCc-cc
Confidence            455554   344432 22345778999999999988 78899999999887643 4444432   345689999998 99


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          81 DAVYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      .|.|.|.+.|..+...+..+.|.+...|.
T Consensus       176 ~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  204 (642)
T 1e07_A          176 TASYKCETQNPVSARRSDSVILNVLYGPD  204 (642)
T ss_pred             CeeEEEEEecCCCCcccceEEEEEEeCCC
Confidence            99999999998775434566777765543

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.28  E-value=6.7e-10  Score=57.69  Aligned_cols=91  Identities=19%  Similarity=0.197  Sum_probs=61.2

Q ss_pred             cCcceeeecCCcEEEEEEEeccCC---CeEEEEECCee--c---c-----------CCCCceEEEeC--CCCCeEEEEcc
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDPI---PVIQWRKNGKR--V---S-----------GTQSRYMVQEF--PPGGSLLRIEP   74 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~~---~~~~w~~~~~~--~---~-----------~~~~~~~~~~~--~~~~~~l~~~~   74 (111)
                      ++..+.+..|++++|.|...+.+.   +.+.|++.+..  +   .           ....|+.+...  ......|.|.+
T Consensus        12 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~   91 (139)
T 1pko_A           12 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN   91 (139)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEcc
Confidence            444578889999999999876542   58999987641  1   0           00234444321  01234599999


Q ss_pred             CCCCCCCeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          75 VRHARDDAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      ++. .|+|.|.|.+.+..+. ....+.|.|..++
T Consensus        92 v~~-~D~G~Y~C~v~~~~~~-~~~~~~L~V~~P~  123 (139)
T 1pko_A           92 VRF-SDEGGYTCFFRDHSYQ-EEAAVELKVEDPF  123 (139)
T ss_dssp             CCG-GGCEEEEEEEEETTEE-EEEEEEEEEECTT
T ss_pred             CCH-HHCEEEEEEEEcCCCc-eEEEEEEEEecCc
Confidence            998 9999999999998765 3667778777543

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.28  E-value=8.5e-11  Score=71.30  Aligned_cols=87  Identities=6%  Similarity=0.050  Sum_probs=60.3

Q ss_pred             EcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      ..+..+.+.+|+++.|.|.+.+.|.+.+.|++++..+... ..+..  .......|.|.++.. .|+|.|.|.+.|..|.
T Consensus        53 ~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~-~~~~~--~~~~~~sL~I~~v~~-~D~G~Y~C~a~N~~g~  128 (423)
T 3qs7_E           53 YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQ-PHFDL--QNRGVVSMVILKMTE-TQAGEYLLFIQSEATN  128 (423)
T ss_dssp             ---CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCC-CBC-------CEEEEEESSCCS-SSCSEEEEEEEC--CE
T ss_pred             eccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCcc-ceecc--ccceEEEEEEeecCc-ccCEEEEEEEEcCCCc
Confidence            3444678899999999999999999999999998776432 11110  000223488999998 9999999999999886


Q ss_pred             eEeeEEEEEEec
Q psy2442          95 AVSAEASLTVYE  106 (111)
Q Consensus        95 ~~~~~~~l~~~~  106 (111)
                      . ...+.|.|..
T Consensus       129 ~-~~~~~l~V~~  139 (423)
T 3qs7_E          129 Y-TILFTVSIRN  139 (423)
T ss_dssp             E-EEEEEEEEC-
T ss_pred             E-EEEEEEEEec
Confidence            4 6666666653

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.28  E-value=3.8e-11  Score=68.22  Aligned_cols=76  Identities=20%  Similarity=0.274  Sum_probs=54.5

Q ss_pred             EcCcceeeecCCcEEEEEEEeccCCCeEEEEE--CCeecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRK--NGKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~--~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      ..+..+.+..|++++|.|.+.+.+.+.+.|++  .+..+.           ....++...... ....|.|.++.. .|+
T Consensus       144 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~-~D~  221 (257)
T 1f3r_B          144 QSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSG-TDYTLTISSLQP-EDV  221 (257)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEB-TEEEEEECSCCG-GGC
T ss_pred             ccCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCC-CEEEEEECCCCh-hhC
Confidence            44555678899999999999888888999999  444321           012344433211 334599999998 999


Q ss_pred             eEEEEEeeeCC
Q psy2442          82 AVYECVAENGV   92 (111)
Q Consensus        82 g~y~c~~~~~~   92 (111)
                      |.|.|.+.|..
T Consensus       222 G~Y~C~a~n~~  232 (257)
T 1f3r_B          222 ATYFCYQYNNG  232 (257)
T ss_dssp             SEEEEEEESSS
T ss_pred             EEEEEEEeCCC
Confidence            99999999864

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.27  E-value=1.1e-11  Score=67.71  Aligned_cols=88  Identities=13%  Similarity=0.118  Sum_probs=49.0

Q ss_pred             eeEEecC---CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442           3 RKVRFLD---PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus         3 ~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.|.|..   +|.+...+. ..+..|+.++|.|.+.+.+ +.+.|++++..+..................|.|.++.. .
T Consensus        90 ~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~  166 (196)
T 2d3v_A           90 LELVVTGFYNKPTLSALPS-PVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTP-S  166 (196)
T ss_dssp             EEEEEECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBT-T
T ss_pred             EEEEecCCCCCCeEEccCC-ccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEEeeecCc-c
Confidence            3466655   455543332 4677899999999999887 89999999887632100101110000125589999998 9


Q ss_pred             CCeEEEEEeeeCCC
Q psy2442          80 DDAVYECVAENGVG   93 (111)
Q Consensus        80 d~g~y~c~~~~~~~   93 (111)
                      |.|.|.|.+.|..+
T Consensus       167 D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          167 HRWMLRCYGSRRHI  180 (196)
T ss_dssp             BCEEEEEEEEETTE
T ss_pred             cCeeEEEEEEccCC
Confidence            99999999998653

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.27  E-value=6.8e-11  Score=70.62  Aligned_cols=82  Identities=30%  Similarity=0.625  Sum_probs=60.6

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCeEEEEECCe-eccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK-RVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      +....+..|+.+.|.|.+.+.|.|.+.|++.+. .+..   ......   ....|.|.++.. .|+|.|.|.+.|..|..
T Consensus       212 ~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~---~~~~~~---~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~  284 (384)
T 3kld_A          212 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIAR---KARRHK---SNGILEIPNFQQ-EDAGSYECVAENSRGKN  284 (384)
T ss_dssp             CSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCT---TCEECT---TSCEEEECSCCG-GGCEEEEEEEEETTEEE
T ss_pred             CCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccc---cceecC---CCcEEEECCCCh-hhCEEEEEEEEcCCCeE
Confidence            445567889999999999999999999999544 3322   111111   345599999998 99999999999998864


Q ss_pred             EeeEEEEEEec
Q psy2442          96 VSAEASLTVYE  106 (111)
Q Consensus        96 ~~~~~~l~~~~  106 (111)
                       .....+.+..
T Consensus       285 -~~~~~l~v~~  294 (384)
T 3kld_A          285 -VAKGQLTFYA  294 (384)
T ss_dssp             -EEEEEEEEEE
T ss_pred             -EEEEEEEEec
Confidence             5555555544

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.27  E-value=6.4e-11  Score=70.48  Aligned_cols=94  Identities=24%  Similarity=0.445  Sum_probs=66.1

Q ss_pred             CCeeEEcCcc-eeeecCCcEEEEEEEeccCCCeEEEEE-CCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC------C
Q psy2442          10 PPEITLRPRN-QAVKAGGITSFYCIARGDPIPVIQWRK-NGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD------D   81 (111)
Q Consensus        10 ~p~~~~~~~~-~~~~~g~~~~l~c~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d------~   81 (111)
                      +|.+...+.. +.+..|+.+.|.|.+.+.|.+.+.|++ +|..+....... ...   ....|.|.++.. .|      .
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~-~~~---~~~~L~i~~~~~-~d~~~~~d~   77 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLR-QIS---SDGKLVFPPFRA-EDYRQEVHA   77 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTB-EEC---STTEEEECCCCG-GGCCHHHHE
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCce-EEc---CCceEEecccCh-hhccccccC
Confidence            5666666554 457789999999999999999999999 676664321222 222   234588998887 76      9


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      |.|.|.+.|..|...+..+.+.+..+|
T Consensus        78 G~Y~C~a~n~~g~~~s~~~~v~v~~~p  104 (388)
T 2v5m_A           78 QVYACLARNQFGSIISRDVHVRAVVAQ  104 (388)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEECCC
T ss_pred             ceEEEEEEccCCeEEecceEEEEcccc
Confidence            999999999887533445556555443

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.27  E-value=2.1e-10  Score=63.43  Aligned_cols=79  Identities=18%  Similarity=0.358  Sum_probs=55.5

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEecc-CCCeEEEEECC--eec---------------cCCCCceEEEeCCCCCeEEEEc
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNG--KRV---------------SGTQSRYMVQEFPPGGSLLRIE   73 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~--~~~---------------~~~~~~~~~~~~~~~~~~l~~~   73 (111)
                      .+.+.+ .+.+..|+++.|.|...+. +.+.+.|++..  ...               .....++...... ....|.|.
T Consensus         3 ~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~   80 (218)
T 3s96_B            3 VLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSG-ADRYLSIS   80 (218)
T ss_dssp             SEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEET-TEEEEEES
T ss_pred             eEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCC-ceEEEEEc
Confidence            344455 6788999999999999998 88899999832  100               0111344443211 33459999


Q ss_pred             cCCCCCCCeEEEEEeeeCCC
Q psy2442          74 PVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~   93 (111)
                      ++.. .|+|.|.|.+.+..|
T Consensus        81 ~v~~-~D~G~Y~C~~~~~~~   99 (218)
T 3s96_B           81 NIQP-EDEAIYICGVGDTIK   99 (218)
T ss_dssp             SCCG-GGCEEEEEEEEEEET
T ss_pred             cCCc-ccCEEEEEEEecCCC
Confidence            9998 999999999988664

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.27  E-value=2.4e-10  Score=62.96  Aligned_cols=88  Identities=22%  Similarity=0.315  Sum_probs=59.4

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCeEEEEECC--eec-----------cCCCCceEEEeCCCCCeEEEEccCCCCCCCeE
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KRV-----------SGTQSRYMVQEFPPGGSLLRIEPVRHARDDAV   83 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~   83 (111)
                      +..+.+..|+.+.|.|.+.+.+.+.+.|++..  ..+           .....++...... ....|.|.++.. .|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~-~D~G~   84 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSG-TDFTLTIDPVEA-DDTAI   84 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCG-GGCEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecC-CEEEEEECCCCH-HHCeE
Confidence            56678899999999999998888899999842  211           0112455443211 334699999998 99999


Q ss_pred             EEEEeeeCCCceEeeEEEEEEec
Q psy2442          84 YECVAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        84 y~c~~~~~~~~~~~~~~~l~~~~  106 (111)
                      |.|.+.|..+........+.+..
T Consensus        85 Y~C~~~~~~~~~~~~~~~l~V~~  107 (210)
T 1lk3_L           85 YFCQQSWNGPLTFGAGTKLELKR  107 (210)
T ss_dssp             EEEEECSSSSCEECCCEEEEECC
T ss_pred             EEEEEEcCCCceeCCCEEEEEcC
Confidence            99999987653222233444443

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.27  E-value=4.9e-11  Score=65.18  Aligned_cols=97  Identities=16%  Similarity=0.240  Sum_probs=62.3

Q ss_pred             eEEec---CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           4 KVRFL---DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         4 ~l~v~---~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .|.|.   .+|.+...+.. .+..|+.++|.|.+.+. ++.+.|++++..+............. ....|.|.++.. .|
T Consensus        91 ~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~-~~~~L~i~~v~~-~d  166 (196)
T 3p2t_A           91 ELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGAQQ-HQAEFPMSPVTS-VH  166 (196)
T ss_dssp             EEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEEEE-EEEEEEECSCCG-GG
T ss_pred             EEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeecccccccC-cceEEEeCCCcc-cC
Confidence            45553   24555544443 67899999999998874 45889999987664321111110000 335599999998 99


Q ss_pred             CeEEEEEeeeCCC----ceEeeEEEEEE
Q psy2442          81 DAVYECVAENGVG----DAVSAEASLTV  104 (111)
Q Consensus        81 ~g~y~c~~~~~~~----~~~~~~~~l~~  104 (111)
                      .|.|.|.+.|..+    ...+..+.|.|
T Consensus       167 ~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  194 (196)
T 3p2t_A          167 GGTYRCFSSHGFSHYLLSHPSDPLELIV  194 (196)
T ss_dssp             CEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred             CCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence            9999999999764    22244555554

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.27  E-value=3.9e-11  Score=65.74  Aligned_cols=95  Identities=14%  Similarity=0.256  Sum_probs=67.8

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeec-----------cCCCCceEEEeCCCCCeEEEEccCCCC
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV-----------SGTQSRYMVQEFPPGGSLLRIEPVRHA   78 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (111)
                      +..+...+..+.+..|+.+.|.|...+.+.+.+.|++++..+           .....++...    . ..|.|.++.. 
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~-~~L~i~~~~~-   77 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL----P-TGITFKSVTR-   77 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE----T-TEEECSCCCT-
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee----c-cEEEEeeCCH-
Confidence            455556677778899999999999998888899999876542           1112344332    2 4488999998 


Q ss_pred             CCCeEEEEEeeeCCCc-eEeeEEEEEEecCCCC
Q psy2442          79 RDDAVYECVAENGVGD-AVSAEASLTVYEGEEK  110 (111)
Q Consensus        79 ~d~g~y~c~~~~~~~~-~~~~~~~l~~~~~~~~  110 (111)
                      .|.|.|.|.+.+..|. .....+.+.+..+|..
T Consensus        78 ~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~  110 (209)
T 1nbq_A           78 EDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSK  110 (209)
T ss_dssp             TSCSEEEEEEEETTSSCEECCEEECCEEBCCCC
T ss_pred             HHCcEEEEEEecCCCCccceEEEEEEEecCCcC
Confidence            9999999999987542 1245666667666543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.27  E-value=8.4e-11  Score=68.18  Aligned_cols=87  Identities=16%  Similarity=0.244  Sum_probs=64.1

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEecc-CCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYEC   86 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c   86 (111)
                      ..+|.+.... ...+..|+.+.|.|.+.+. |.+.+.|++++..+... .++....   ....|.|.++.. .|.|.|.|
T Consensus         5 ~~~P~~~~~~-~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~---~~~~L~i~~~~~-~d~G~Y~C   78 (317)
T 2y25_A            5 FTGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD-EKHDFKD---GICTLLITEFSK-KDAGIYEV   78 (317)
T ss_dssp             SSCCEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCS-CC--------CCEEEEETTCCS-TTCSCEEE
T ss_pred             cCCCcEeeee-eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCC-CcEEEEC---CeEEEEEccCCc-ccCeEEEE
Confidence            4567776444 4788899999999998887 67899999999888643 3433322   445699999998 99999999


Q ss_pred             EeeeCCCceEeeEEE
Q psy2442          87 VAENGVGDAVSAEAS  101 (111)
Q Consensus        87 ~~~~~~~~~~~~~~~  101 (111)
                      .+.|..|.. ...+.
T Consensus        79 ~~~n~~g~~-~~~~~   92 (317)
T 2y25_A           79 ILKDDRGKD-KSRLK   92 (317)
T ss_dssp             EEESSSCEE-EEEEC
T ss_pred             EEECCCCcE-EEEEE
Confidence            999987753 44433

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.26  E-value=7.3e-11  Score=65.01  Aligned_cols=106  Identities=15%  Similarity=0.112  Sum_probs=64.9

Q ss_pred             eeEEecCCCee-EEcCcceeeecCCcEEEEEEEeccCC---CeEEEEECCeeccCCCCceEEEeC--CCCCeEEEEccCC
Q psy2442           3 RKVRFLDPPEI-TLRPRNQAVKAGGITSFYCIARGDPI---PVIQWRKNGKRVSGTQSRYMVQEF--PPGGSLLRIEPVR   76 (111)
Q Consensus         3 ~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~c~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~   76 (111)
                      ++|.|..+|.. ...+. ..+..|+.++|.|.+.+.++   +.+.|++++..+............  ......|.+....
T Consensus        84 ~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~  162 (202)
T 1vca_A           84 IQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVI  162 (202)
T ss_dssp             EEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCG
T ss_pred             EEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeee
Confidence            46677765543 22222 46789999999999987543   368999999876421000000000  0011225666666


Q ss_pred             CCCCCeEEEEEeeeCCCc------eEeeEEEEEEecCCCC
Q psy2442          77 HARDDAVYECVAENGVGD------AVSAEASLTVYEGEEK  110 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~~------~~~~~~~l~~~~~~~~  110 (111)
                      . .|.|.|.|.+.|..+.      .....+.|.|.++|..
T Consensus       163 ~-d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~~  201 (202)
T 1vca_A          163 E-DIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKN  201 (202)
T ss_dssp             G-GTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC--
T ss_pred             c-cCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCCC
Confidence            5 6788999999998764      1355778888888764

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.26  E-value=2.4e-10  Score=65.83  Aligned_cols=91  Identities=19%  Similarity=0.281  Sum_probs=60.7

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEE--CCeecc-----------CCCCceEEEeCCCCCeEEEEccCCCC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRK--NGKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHA   78 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~--~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (111)
                      .+...+..+.+..|++++|.|.+.+.+ +.+.|++  .+..+.           ....++...... ....|.|.++.. 
T Consensus       164 ~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~-  240 (282)
T 1qok_A          164 VLTQSPAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSG-TSYSLTISRMEA-  240 (282)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCG-
T ss_pred             EEecCCCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCC-CEEEEEEccCCh-
Confidence            344556667788999999999999888 8999999  444331           112445433211 334599999998 


Q ss_pred             CCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          79 RDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        79 ~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      .|+|.|.|.+.+..+........|.|.
T Consensus       241 ~DsG~Y~C~a~~~~~~~fg~gt~l~V~  267 (282)
T 1qok_A          241 EDAATYYCQQRSSYPLTFGAGTKLELK  267 (282)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             hHCEEEEEEEeeCCCceEeCCEEEEEe
Confidence            999999999987533222333445544

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.26  E-value=1.7e-11  Score=67.72  Aligned_cols=86  Identities=14%  Similarity=0.180  Sum_probs=59.5

Q ss_pred             ceeeecCCcEEEEEE---EeccCCCeEEEEECCeeccC----------------CCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          19 NQAVKAGGITSFYCI---ARGDPIPVIQWRKNGKRVSG----------------TQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~---~~~~~~~~~~w~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      .+.+..|+.++|.|.   +.+.|.+.+.|++.|.....                ...++...... ....|.|.++.. .
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~v~~-~   79 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA-NTFFLVVTAANI-S   79 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEET-TEEEEEESSCCG-G
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcC-CEEEEEEccCCH-H
Confidence            467889999999996   45678889999987542210                01122222211 345599999998 9


Q ss_pred             CCeEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          80 DDAVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        80 d~g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      |+|.|.|.+.|..|.. ...+.|.|..+
T Consensus        80 D~G~Y~C~a~n~~g~~-~~~~~l~V~~p  106 (203)
T 4fa8_A           80 HDGNYLCRMKLGETEV-TKQEHLSVVKP  106 (203)
T ss_dssp             GCEEEEEEEEETTEEE-EEEEEEEEEEE
T ss_pred             HCeEEEEEEEcCCCcE-EEEEEEEecCC
Confidence            9999999999988764 66666666543

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.26  E-value=1.8e-10  Score=65.19  Aligned_cols=83  Identities=20%  Similarity=0.274  Sum_probs=58.8

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccC-----CCeEEEEECC--eec-----------cCCCCceEEEeCCCCCeEE
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDP-----IPVIQWRKNG--KRV-----------SGTQSRYMVQEFPPGGSLL   70 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~-----~~~~~w~~~~--~~~-----------~~~~~~~~~~~~~~~~~~l   70 (111)
                      .++.+...+..+.+..|+.++|.|.+.+.+     .+.+.|++..  ..+           .....++...... ....|
T Consensus        37 ~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L  115 (254)
T 2c1o_A           37 RELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSG-TDFTL  115 (254)
T ss_dssp             -CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEE
T ss_pred             eceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCC-CEEEE
Confidence            356666667778899999999999998877     3789999742  211           1112455443311 33459


Q ss_pred             EEccCCCCCCCeEEEEEeeeCCC
Q psy2442          71 RIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        71 ~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      .|.++.. .|.|.|.|.+.|..+
T Consensus       116 ~I~~v~~-~D~G~Y~C~a~n~~~  137 (254)
T 2c1o_A          116 KISRVEA-EDLGIYYCVQGSHFP  137 (254)
T ss_dssp             EESSCCG-GGCSEEEEEECSSSS
T ss_pred             EECcCCc-ccCEEEEEEEEcCcc
Confidence            9999998 999999999988754

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.26  E-value=2.6e-10  Score=64.66  Aligned_cols=82  Identities=20%  Similarity=0.290  Sum_probs=57.3

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCC-CeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccC
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPI-PVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPV   75 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~   75 (111)
                      ++.+...+..+.+..|++++|.|.+.+.+. +.+.|++.  +..+.           ....++...... ....|.|.++
T Consensus       149 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v  227 (256)
T 3juy_B          149 EIVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSG-TDFTLTITRV  227 (256)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSC
T ss_pred             eeEEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccC-CEEEEEECCC
Confidence            345566677778899999999999988775 79999983  22211           012344433211 3345999999


Q ss_pred             CCCCCCeEEEEEeeeCCC
Q psy2442          76 RHARDDAVYECVAENGVG   93 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~~~   93 (111)
                      .. .|+|.|.|.+.|...
T Consensus       228 ~~-~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          228 EP-EDFALYYCQVYGASS  244 (256)
T ss_dssp             CG-GGCSEEEEEECCSSC
T ss_pred             CH-hHCEEEEEEEeeCCC
Confidence            98 999999999988543

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.26  E-value=1.2e-11  Score=67.71  Aligned_cols=92  Identities=13%  Similarity=0.169  Sum_probs=63.2

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+.. .+..|++++|.|.+.+.+. .+.|++++..+...........   ....|.|.++.. .|+|.|.|.+
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~---~~~~L~i~~v~~-~D~G~Y~C~a   77 (198)
T 1ugn_A            4 PKPTLWAEPGS-VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELV---KKGQFPIPSITW-EHTGRYRCYY   77 (198)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHH---TTTEEEESSCCG-GGCEEEEEEE
T ss_pred             CCCeEeccCCC-cccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCC---cccEEEECCCCH-HHCeEEEEEE
Confidence            46777666654 7889999999999988765 7999999876631100000000   334589999998 9999999999


Q ss_pred             eeCC-Cc-eEeeEEEEEEec
Q psy2442          89 ENGV-GD-AVSAEASLTVYE  106 (111)
Q Consensus        89 ~~~~-~~-~~~~~~~l~~~~  106 (111)
                      .|.. |. ..+..+.|.|.+
T Consensus        78 ~n~~~g~~~~s~~~~l~V~~   97 (198)
T 1ugn_A           78 GSDTAGRSESSDPLELVVTG   97 (198)
T ss_dssp             EETTTEECCCCCCEEEEEEC
T ss_pred             ECCCCCcccCCccEEEEEcc
Confidence            9976 41 124456666665

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=99.26  E-value=1.6e-10  Score=58.78  Aligned_cols=78  Identities=23%  Similarity=0.374  Sum_probs=55.6

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--ee---c-c-------CCCCceEEEeCCCCCeEEEEccCCCC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KR---V-S-------GTQSRYMVQEFPPGGSLLRIEPVRHA   78 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~---~-~-------~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (111)
                      .+.+.+..+.+.+|++++|.|...+.+.+.+.|++..  ..   + .       ....++...... ....|.|.+++. 
T Consensus         5 ~v~q~p~~v~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~-~~~~L~I~~v~~-   82 (119)
T 2e27_L            5 QMTQSPSSLSASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSG-RDYSFSISNLEP-   82 (119)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEECSCCG-
T ss_pred             eeEecCCeEEEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccC-CEEEEEECCCCh-
Confidence            3455666778999999999999988777789999852  11   1 0       112455543211 334599999998 


Q ss_pred             CCCeEEEEEeeeC
Q psy2442          79 RDDAVYECVAENG   91 (111)
Q Consensus        79 ~d~g~y~c~~~~~   91 (111)
                      +|+|.|.|.+.+.
T Consensus        83 ~DsG~Y~C~~~~~   95 (119)
T 2e27_L           83 EDAATYYCLQYDN   95 (119)
T ss_dssp             GGCEEEEEEECGG
T ss_pred             HHCEEEEEEEccC
Confidence            9999999998874

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.26  E-value=5.9e-11  Score=64.05  Aligned_cols=86  Identities=15%  Similarity=0.195  Sum_probs=60.0

Q ss_pred             eeeecCCcEEEEEEEec--cCCCeEEEEECCeecc---------CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          20 QAVKAGGITSFYCIARG--DPIPVIQWRKNGKRVS---------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~--~~~~~~~w~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      +.+..|+.+.|.|...+  .+.+.+.|++++..+.         ....++.+.    ....|.|.++.. .|+|.|.|.+
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~----~~gsL~I~~v~~-~D~G~Y~C~~   80 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL----ANGDLKIKNLTR-DDSGTYNVTV   80 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC----TTSCEEESSCCG-GGCEEEEEEE
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEEC----CCCcEEEccccc-ccCEEEEEEE
Confidence            56778999999995333  4455899999986432         112455442    222399999998 9999999999


Q ss_pred             eeCCCce-EeeEEEEEEecCCCC
Q psy2442          89 ENGVGDA-VSAEASLTVYEGEEK  110 (111)
Q Consensus        89 ~~~~~~~-~~~~~~l~~~~~~~~  110 (111)
                      .|..|.. ....+.|.|..++..
T Consensus        81 ~n~~g~~~~~~~~~l~V~~~~~~  103 (176)
T 1hng_A           81 YSTNGTRILNKALDLRILEMVSK  103 (176)
T ss_dssp             EETTCCEEEEEEEEEEEECCCCC
T ss_pred             EeCCCCEEEEEEEEEEEeCCCCC
Confidence            9988763 255667777665543

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.25  E-value=6.1e-10  Score=71.99  Aligned_cols=97  Identities=33%  Similarity=0.605  Sum_probs=72.6

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEe---CC-CCCeEEEEccCCCCCCCeEE
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQE---FP-PGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---~~-~~~~~l~~~~~~~~~d~g~y   84 (111)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++....   .+ .....|.+..+.. .|.|.|
T Consensus       428 ~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y  505 (816)
T 3dmk_A          428 DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANN-DRYQVGQYVTVNGDVVSYLNITSVHA-NDGGLY  505 (816)
T ss_dssp             CCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSC-TTEEEEEEECTTSCEEEEEEESSCCT-TTCEEE
T ss_pred             CCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCC-CCcccccEEecCCCcEEEEEEeeccc-cCCEEE
Confidence            5677766666667889999999999999999999999999988643 3333211   11 0123488999998 999999


Q ss_pred             EEEeeeCCCceEeeEEEEEEecCC
Q psy2442          85 ECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        85 ~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .|.+.|..|.. .....+.+..+|
T Consensus       506 ~C~a~n~~g~~-~~~~~l~V~~~p  528 (816)
T 3dmk_A          506 KCIAKSKVGVA-EHSAKLNVYGLP  528 (816)
T ss_dssp             EEEEEETTEEE-EEEEEEEECSSC
T ss_pred             EEEEEECCCeE-EEEEEEEEecCC
Confidence            99999998864 667777776554

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.25  E-value=2.9e-10  Score=64.38  Aligned_cols=82  Identities=23%  Similarity=0.271  Sum_probs=57.5

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccC-----CCeEEEEECCe--ec-----------cCCCCceEEEeCCCCCeEEE
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDP-----IPVIQWRKNGK--RV-----------SGTQSRYMVQEFPPGGSLLR   71 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~-----~~~~~w~~~~~--~~-----------~~~~~~~~~~~~~~~~~~l~   71 (111)
                      .+.+...+..+.+..|++++|.|...+.+     .+.+.|++.+.  .+           .....++...... ....|.
T Consensus        34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~  112 (252)
T 3bkj_L           34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSG-TDFTLR  112 (252)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEE
T ss_pred             ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccC-CEEEEE
Confidence            34455556777889999999999998876     57899998541  11           0112455443211 334599


Q ss_pred             EccCCCCCCCeEEEEEeeeCCC
Q psy2442          72 IEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        72 ~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      |.++.. .|+|.|.|.+.|..+
T Consensus       113 I~~v~~-~D~G~Y~C~~~~~~~  133 (252)
T 3bkj_L          113 ISRVEA-EDLGVYYCFQASLVP  133 (252)
T ss_dssp             ESSCCG-GGCEEEEEEECSBSS
T ss_pred             ECCCCc-ccCEEEEEEEEcCCc
Confidence            999998 999999999988654

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=99.25  E-value=1.5e-10  Score=57.83  Aligned_cols=78  Identities=21%  Similarity=0.332  Sum_probs=55.6

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--ee---cc--------CCCCceEEEeCCCCCeEEEEccCCCC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KR---VS--------GTQSRYMVQEFPPGGSLLRIEPVRHA   78 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~---~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (111)
                      .+.+.+..+.+.+|++++|.|...+.+.+.+.|++..  ..   +.        ....|+...... ....|.|.+++. 
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~-~~~~L~I~~v~~-   82 (109)
T 2q20_A            5 QMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSG-TDFTFTISSLQP-   82 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCG-
T ss_pred             cEEeeCCEEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccC-CEEEEEECCCCh-
Confidence            4455566678999999999999988777789999853  11   10        112455543211 334599999998 


Q ss_pred             CCCeEEEEEeeeC
Q psy2442          79 RDDAVYECVAENG   91 (111)
Q Consensus        79 ~d~g~y~c~~~~~   91 (111)
                      +|+|.|.|.+.+.
T Consensus        83 ~DsG~Y~C~~~~~   95 (109)
T 2q20_A           83 EDIATYYCQQYDN   95 (109)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             hhCEEEEEEEeeC
Confidence            9999999998874

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.25  E-value=6.2e-11  Score=64.45  Aligned_cols=91  Identities=18%  Similarity=0.095  Sum_probs=60.4

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      +|.+...+.. .+..|++++|.|.+.+. .+.+.|++++..+........   .......|.|.++.. .|+|.|.|.+.
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~---~~~~~~~L~I~~v~~-~D~G~Y~C~~~   77 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRPKPP---ERINKVKFYIPDMNS-RMAGQYSCIYR   77 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECCSSC---TTCCEEEEEESSCCG-GGCEEEEEEEE
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEecCCC-CCEEEEEECCCcccccccccC---CCcceeEEEeCcCCc-ccCeEEEEEec
Confidence            5666666665 78899999999998653 458899999876531100000   001335589999998 99999999998


Q ss_pred             eCCCce-EeeEEEEEEec
Q psy2442          90 NGVGDA-VSAEASLTVYE  106 (111)
Q Consensus        90 ~~~~~~-~~~~~~l~~~~  106 (111)
                      |..+.. .+..+.|.|.+
T Consensus        78 ~~~~~~~~s~~~~l~V~~   95 (188)
T 1oll_A           78 VGELWSEPSNLLDLVVTE   95 (188)
T ss_dssp             ETTEECCCCCCEEEEEES
T ss_pred             CCCCCCCCCCceEEEecc
Confidence            764321 13445555553

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.25  E-value=4.5e-11  Score=65.67  Aligned_cols=94  Identities=37%  Similarity=0.580  Sum_probs=63.8

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCC---ceEEEeCCCCCeE----EEEccCCCCCCC
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS---RYMVQEFPPGGSL----LRIEPVRHARDD   81 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~~~----l~~~~~~~~~d~   81 (111)
                      .+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.....   .......  ....    +.+.++.. .|.
T Consensus         8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~-~d~   84 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP--SGSLFFLRIVHGRKSR-PDE   84 (212)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECT--TSCEEESSCCCCSSCC-CSC
T ss_pred             CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEec--CCcEEEEEEEecCCCc-ccC
Confidence            366777778888899999999999999988899999999988753211   1111111  1111    22345577 899


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      |.|.|.+.|..|........+.+.
T Consensus        85 G~Y~C~~~n~~g~~~~~~~~l~V~  108 (212)
T 2v9r_A           85 GVYVCVARNYLGEAVSHDASLEVA  108 (212)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEC
T ss_pred             eEEEEEEECCCCceeecceEEEEE
Confidence            999999999876432334455543

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.25  E-value=1.1e-10  Score=64.98  Aligned_cols=96  Identities=15%  Similarity=0.174  Sum_probs=64.7

Q ss_pred             eEEecC---CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           4 KVRFLD---PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         4 ~l~v~~---~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .|.|..   +|.+...+ ...+..|+.++|.|...+.+.+.+.|+++|..+...  . ...  . ....|.|.++.. .|
T Consensus        97 ~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~--~-~~~--~-~~~~L~I~~v~~-~D  168 (218)
T 1uct_A           97 ELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--H-QSG--E-HPANFSLGPVDL-NV  168 (218)
T ss_dssp             EEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--E-EEC--S-SSEEEECCSCCG-GG
T ss_pred             EEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc--c-cCC--C-ccCEEEEccCCc-cc
Confidence            455543   45555445 346789999999997667677789999998866431  1 111  1 445699999998 99


Q ss_pred             CeEEEEEeeeCCC----ceEeeEEEEEEecC
Q psy2442          81 DAVYECVAENGVG----DAVSAEASLTVYEG  107 (111)
Q Consensus        81 ~g~y~c~~~~~~~----~~~~~~~~l~~~~~  107 (111)
                      +|.|.|.+.|...    ...+..+.|.|.+.
T Consensus       169 ~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~  199 (218)
T 1uct_A          169 SGIYRCYGWYNRSPYLWSFPSNALELVVTDS  199 (218)
T ss_dssp             CEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred             CEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence            9999999987531    12345666766654

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.24  E-value=2.6e-10  Score=62.55  Aligned_cols=87  Identities=11%  Similarity=0.092  Sum_probs=61.0

Q ss_pred             ceeeecCCcEEEEEEEeccCCCeEEEEECCeeccC------------------CCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442          19 NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSG------------------TQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      ...+..|+.+.|.|...+.+.+.+.|++++.....                  ...++...    ....|.|.++.. .|
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~----~~~~L~i~~v~~-~D   82 (208)
T 3r4d_A            8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY----SNGSLLFQMITM-KD   82 (208)
T ss_dssp             SSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC----TTSCEEECSCCG-GG
T ss_pred             cceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe----cCCeEEEccccc-cC
Confidence            35788999999999987878889999987542211                  11233222    123489999998 99


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEEEecCCCC
Q psy2442          81 DAVYECVAENGVGDAVSAEASLTVYEGEEK  110 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~~~~~~~~  110 (111)
                      +|.|.|.+.+..+......+.+.|..++..
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~  112 (208)
T 3r4d_A           83 MGVYTLDMTDENYRRTQATVRFHVHQPVTQ  112 (208)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEEECCCCC
T ss_pred             CeEEEEEEEcccCceeEEEEEEEeccCCCC
Confidence            999999999975433466677777666543

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.24  E-value=1e-10  Score=75.50  Aligned_cols=88  Identities=32%  Similarity=0.593  Sum_probs=68.4

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      +.|.|..++.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..            ....|.|.++.. .|.|
T Consensus       336 ~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~------------~~~~L~i~~v~~-~d~G  402 (816)
T 3dmk_A          336 TVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH------------SESVLRIESVKK-EDKG  402 (816)
T ss_dssp             EEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSC------------CSSEEEESSCCG-GGCE
T ss_pred             EEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCC------------CCCEEEEcCCCH-HHCE
Confidence            346666666666666667888999999999999999999999999988753            223488899998 9999


Q ss_pred             EEEEEeeeCCCceEeeEEEEEE
Q psy2442          83 VYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      .|.|.+.|..+.. .....+.+
T Consensus       403 ~Y~C~a~n~~g~~-~~~~~l~v  423 (816)
T 3dmk_A          403 MYQCFVRNDRESA-EASAELKL  423 (816)
T ss_dssp             EEEEEEECSSCEE-EECCEEEC
T ss_pred             EEEEEEECCCCcE-EEEEEEEE
Confidence            9999999987753 44444444

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.24  E-value=1.1e-11  Score=75.27  Aligned_cols=87  Identities=24%  Similarity=0.383  Sum_probs=65.4

Q ss_pred             eeEEecCCCeeEEcC--cceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           3 RKVRFLDPPEITLRP--RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      +.|.|..+|.+....  ....+..|+.+.|.|.+.|.|.|.+.|++++..+..            ....+   .+.. .|
T Consensus       361 ~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~------------~g~~~---~v~~-~d  424 (450)
T 1z7z_I          361 RELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP------------IGESV---TVTR-DL  424 (450)
T ss_dssp             EECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECC------------TTSCE---ECCG-GG
T ss_pred             EEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCC------------CCCeE---eEeh-hh
Confidence            355666677665443  456788999999999999999999999999874322            11112   4666 89


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEEEec
Q psy2442          81 DAVYECVAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~~~~  106 (111)
                      +|.|.|.+.|..|.. ...+.|.|..
T Consensus       425 ~G~Y~C~a~N~~G~~-~~~~~l~V~~  449 (450)
T 1z7z_I          425 EGTYLCRARSTQGEV-TREVTVNVLS  449 (450)
T ss_dssp             CEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             CeEEEEEEEeCCCce-eEEEEEEEEc
Confidence            999999999999875 7788887764

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.24  E-value=1.5e-10  Score=62.26  Aligned_cols=73  Identities=21%  Similarity=0.265  Sum_probs=58.4

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCCCe-EEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYEC   86 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c   86 (111)
                      ..+|.+...+....+..|+.+.|.|...+.+.+. +.|++++..+..            ....|.|.++.. .|.|.|.|
T Consensus         5 ~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~------------~~~~L~i~~~~~-~d~G~Y~C   71 (175)
T 1fnl_A            5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------------QASSYFIDAATV-NDSGEYRC   71 (175)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES------------SCSEEEESSCCG-GGCEEEEE
T ss_pred             CCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC------------CceEEEEeCCCc-ccCEEEEE
Confidence            3467777777777889999999999998887665 789999887643            233488999998 99999999


Q ss_pred             EeeeCCC
Q psy2442          87 VAENGVG   93 (111)
Q Consensus        87 ~~~~~~~   93 (111)
                      .+.|..+
T Consensus        72 ~~~n~~~   78 (175)
T 1fnl_A           72 QTNLSTL   78 (175)
T ss_dssp             ECSSSCC
T ss_pred             EeeCCcc
Confidence            9988544

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.24  E-value=6.2e-12  Score=71.60  Aligned_cols=86  Identities=24%  Similarity=0.387  Sum_probs=63.1

Q ss_pred             eEEecCCCeeEEc--CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           4 KVRFLDPPEITLR--PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         4 ~l~v~~~p~~~~~--~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      .|.|..+|.+...  +....+..|+.+.|.|.+.+.|.+.+.|++++.....            ... +  ..+.. .|+
T Consensus       177 ~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~------------~g~-~--~~v~~-~d~  240 (265)
T 2oz4_A          177 ELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP------------IGE-S--VTVTR-DLE  240 (265)
T ss_dssp             EEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECC------------TTS-C--EECCG-GGC
T ss_pred             EEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCC------------CCc-E--EEeeh-hhC
Confidence            4666666665433  3355788899999999999999999999998873211            111 1  13666 899


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEec
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~  106 (111)
                      |.|.|.+.|..|.. ...+.|.|.+
T Consensus       241 G~Y~C~a~N~~G~~-~~~~~l~V~~  264 (265)
T 2oz4_A          241 GTYLCRARSTQGEV-TREVTVNVLS  264 (265)
T ss_dssp             EEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             eEEEEEEECCCCcE-EEEEEEEEec
Confidence            99999999998874 7777777764

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=99.23  E-value=1.9e-10  Score=58.98  Aligned_cols=94  Identities=22%  Similarity=0.309  Sum_probs=60.7

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccC----CCeEEEEECC--eecc-----------CCCCceEEEeCCCCCeEEEEcc
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDP----IPVIQWRKNG--KRVS-----------GTQSRYMVQEFPPGGSLLRIEP   74 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~--~~~~-----------~~~~~~~~~~~~~~~~~l~~~~   74 (111)
                      .+.+.+..+.+.+|++++|.|...+.+    ...+.|++..  ..+.           ....++...... ....|.|.+
T Consensus         3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-~~~sL~I~~   81 (126)
T 4ffy_L            3 VLTQSPASLAVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSE-TDFTLTIDS   81 (126)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEESS
T ss_pred             cEEeCCCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCC-CEEEEEECC
Confidence            345566678899999999999988765    4578999842  1110           112355443211 334599999


Q ss_pred             CCCCCCCeEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          75 VRHARDDAVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      ++. +|+|.|.|.+.+...........|.|...
T Consensus        82 v~~-~DsG~Y~C~~~~~~~~~fg~gT~L~V~~~  113 (126)
T 4ffy_L           82 VET-DDAATYYCQQNNEDPYTFGGGTKLEIKGG  113 (126)
T ss_dssp             CCG-GGCEEEEEEECSSSSCEECCCEEEEEEC-
T ss_pred             CCH-HHCEEEEEEEecCCCcEECCCEEEEEecC
Confidence            998 99999999998754322233445555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.22  E-value=2.5e-10  Score=67.95  Aligned_cols=82  Identities=17%  Similarity=0.220  Sum_probs=62.7

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCC---CCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGT---QSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      +..+.+..|+++.+.|.+.+ |.+.+.|++.+......   ..++.. .   . ..|.|.++.. .|+|.|.|.+.|..|
T Consensus       253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~---~-~~L~I~~v~~-~D~G~Y~C~a~N~~g  325 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-R---N-GDLFFKKVQV-EDGGVYTCYAMGETF  325 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-E---T-TEEEESSCCT-TSCEEEEEEEECSSC
T ss_pred             ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-e---c-CeEEEeecCc-ccCEEEEEEEecCCC
Confidence            34567889999999999998 88899999976654321   124444 2   2 3499999998 999999999999988


Q ss_pred             ceEeeEEEEEEec
Q psy2442          94 DAVSAEASLTVYE  106 (111)
Q Consensus        94 ~~~~~~~~l~~~~  106 (111)
                      .. +..+.+.|..
T Consensus       326 ~~-~~~~~l~V~~  337 (361)
T 2xot_A          326 NE-TLSVELKVYN  337 (361)
T ss_dssp             EE-EEEEEEEEES
T ss_pred             cc-EEEEEEEEEe
Confidence            64 7777777754

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.22  E-value=2.9e-10  Score=70.98  Aligned_cols=103  Identities=15%  Similarity=0.093  Sum_probs=73.7

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccC-CCeEEEEECCeeccC------------CCCceEEEeCC--CCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRKNGKRVSG------------TQSRYMVQEFP--PGG   67 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~------------~~~~~~~~~~~--~~~   67 (111)
                      ++|.|..+|.+...+....+..|+.+.|.|.+.+.+ .+.+.|++++.....            ...++.+....  ...
T Consensus       105 ~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  184 (585)
T 2ocw_A          105 VSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLL  184 (585)
T ss_pred             EEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcE
Confidence            567888888887777778899999999999998654 457999998754210            01333333211  011


Q ss_pred             eEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          68 SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        68 ~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      ..|.|.++.. .|.|.|.|.+.|..+.. ...+.|.|..+
T Consensus       185 ~~L~I~~v~~-~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~  222 (585)
T 2ocw_A          185 FSVVINQLRL-SDAGQYLCQAGDDSNSN-KKNADLQVLKP  222 (585)
T ss_pred             EEEEEccCCh-hHCeEEEEEeccCCccc-cceEEEEEccC
Confidence            2589999998 99999999999988764 66777777653

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.22  E-value=3.9e-10  Score=64.68  Aligned_cols=97  Identities=16%  Similarity=0.226  Sum_probs=67.5

Q ss_pred             eeEEecCCCe-eEEcCcceeeecCCcEEEEEEEeccCCCe-EEEEE-CCeeccCCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442           3 RKVRFLDPPE-ITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRK-NGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus         3 ~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      ..|.|..++. +...+....+..|+.+.|.|.+.+.+.+. +.|++ ++..+.. ..++...    ....|.+.++.. .
T Consensus        81 ~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~----~~~~L~i~~v~~-~  154 (289)
T 3ejj_X           81 IHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLR-KTVYFFS----PWRGFIIRKAKV-L  154 (289)
T ss_dssp             EEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCT-TCCEEEE----TTTEEEESSCCG-G
T ss_pred             EEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCC-CccEEEC----CCCCEEEeeccc-c
Confidence            4566776665 45556667888999999999998877664 99986 4554432 2444443    334589999998 9


Q ss_pred             CCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          80 DDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        80 d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      |.|.|.|.+.+.........+.+.|.
T Consensus       155 d~G~Y~C~a~~~~~~~~~~~~~l~V~  180 (289)
T 3ejj_X          155 DSNTYVCKTMVNGRESTSTGIWLKVN  180 (289)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             cCEEEEEEEEeCCCccccccEEEEEE
Confidence            99999999985432223556666665

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.22  E-value=5.7e-10  Score=62.95  Aligned_cols=80  Identities=19%  Similarity=0.241  Sum_probs=56.9

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCe-----e--------ccCCCCceEEEeCCCCCeEEEEccCCCC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK-----R--------VSGTQSRYMVQEFPPGGSLLRIEPVRHA   78 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~-----~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (111)
                      .+...+..+.+.+|+.++|.|...+.+.+.+.|++...     .        ......++...... ....|.|.++.. 
T Consensus         6 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~-   83 (250)
T 3esu_F            6 VLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSG-TDYSLTISNLEQ-   83 (250)
T ss_dssp             CEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCG-
T ss_pred             eEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCC-CEEEEEEccCCh-
Confidence            34455666788899999999999999888999998431     0        01112444333211 334599999998 


Q ss_pred             CCCeEEEEEeeeCCC
Q psy2442          79 RDDAVYECVAENGVG   93 (111)
Q Consensus        79 ~d~g~y~c~~~~~~~   93 (111)
                      .|+|.|.|.+.|..+
T Consensus        84 ~D~G~Y~C~~~n~~~   98 (250)
T 3esu_F           84 EDIGTYFCQQGNTLP   98 (250)
T ss_dssp             GGCEEEEEEECSSSS
T ss_pred             hhCEEEEEEEeeCCC
Confidence            999999999988654

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.22  E-value=3.4e-11  Score=70.59  Aligned_cols=93  Identities=18%  Similarity=0.254  Sum_probs=71.1

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEe-------ccCCCeEEEEECCeec--cCC-CCceEEEeCCCCCeEEEEccCCCC
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIAR-------GDPIPVIQWRKNGKRV--SGT-QSRYMVQEFPPGGSLLRIEPVRHA   78 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~-------~~~~~~~~w~~~~~~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~~   78 (111)
                      ..|.+...+....+.+|+.+.|.|.+.       +.+.+.+.|++++..+  ... ..++..     ....|.|.++.. 
T Consensus        17 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~-   90 (339)
T 3o4o_C           17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA-----QDGALWLLPALQ-   90 (339)
T ss_dssp             -CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEE-----ETTEEEESSBCT-
T ss_pred             hhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEe-----eCCeEEECCCCc-
Confidence            456777778888999999999999987       8888899999998874  222 223332     233599999998 


Q ss_pred             CCCeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          79 RDDAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        79 ~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .|.|.|.|.+.|..|.. ...+.|.|...+
T Consensus        91 ~D~G~Y~C~~~n~~g~~-~~~~~l~V~~~~  119 (339)
T 3o4o_C           91 EDSGTYVCTTRNASYCD-KMSIELRVFENT  119 (339)
T ss_dssp             TCCEEEECCEEETTEEE-EEEEEEEEECSC
T ss_pred             ccCEEEEEEEECCcceE-EEEEEEEEEcCC
Confidence            99999999999987753 667777776554

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.22  E-value=6.9e-11  Score=63.55  Aligned_cols=74  Identities=19%  Similarity=0.293  Sum_probs=56.4

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYEC   86 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c   86 (111)
                      ..+|.+...+....+..|+.+.|.|...+.+.+ .+.|++++..+..            ....|.|.++.. .|.|.|.|
T Consensus         2 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~------------~~~~L~i~~v~~-~d~G~Y~C   68 (176)
T 1f2q_A            2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------------TNSSLNIVNAKF-EDSGEYKC   68 (176)
T ss_dssp             --CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC------------CSSEEEECSCCG-GGCEEEEE
T ss_pred             CCCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC------------CceEEEEeccce-ecCEEEEE
Confidence            346777777777789999999999999887775 6899999887653            234488899998 99999999


Q ss_pred             EeeeCCCc
Q psy2442          87 VAENGVGD   94 (111)
Q Consensus        87 ~~~~~~~~   94 (111)
                      .+.|..+.
T Consensus        69 ~~~~~~~s   76 (176)
T 1f2q_A           69 QHQQVNES   76 (176)
T ss_dssp             ECTTSSCC
T ss_pred             EcCCcccc
Confidence            99886543

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.22  E-value=2.9e-10  Score=57.22  Aligned_cols=90  Identities=19%  Similarity=0.276  Sum_probs=57.8

Q ss_pred             CcceeeecCCcEEEEEEEe-ccCCC----eEEEEECCeecc------------CCCCceEEEeCC--CC--CeEEEEccC
Q psy2442          17 PRNQAVKAGGITSFYCIAR-GDPIP----VIQWRKNGKRVS------------GTQSRYMVQEFP--PG--GSLLRIEPV   75 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~-~~~~~----~~~w~~~~~~~~------------~~~~~~~~~~~~--~~--~~~l~~~~~   75 (111)
                      +..+.+..|++++|.|... +.+.+    .+.|++.+....            ....++.+....  ..  ...|.|.++
T Consensus         7 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v   86 (118)
T 3udw_C            7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSC
T ss_pred             CCeEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeec
Confidence            3336788999999999984 44433    389999743210            002333332211  00  345999999


Q ss_pred             CCCCCCeEEEEEeee-CCCceEeeEEEEEEecCC
Q psy2442          76 RHARDDAVYECVAEN-GVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~-~~~~~~~~~~~l~~~~~~  108 (111)
                      .. .|+|.|.|.+.+ ..+. ......|.|..+|
T Consensus        87 ~~-~D~G~Y~C~v~~~~~~~-~~~~~~L~V~~~P  118 (118)
T 3udw_C           87 RV-EDEGNYTCLFVTFPQGS-RSVDIWLRVLAKP  118 (118)
T ss_dssp             CG-GGCEEEEEEEEEETTEE-EEEEEEEEEEC--
T ss_pred             Ch-HHCeEEEEEEEECCCCC-ccceEEEEEEeCC
Confidence            98 999999999988 5554 3667778777654

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.22  E-value=8.8e-11  Score=69.83  Aligned_cols=90  Identities=31%  Similarity=0.472  Sum_probs=64.3

Q ss_pred             CCeeEEcCcceee---ecCCcEEEEEEEeccCCCeEEEEECCeeccCC-CCceEEEeCCCCCeEEEEccCC-CCCCCeEE
Q psy2442          10 PPEITLRPRNQAV---KAGGITSFYCIARGDPIPVIQWRKNGKRVSGT-QSRYMVQEFPPGGSLLRIEPVR-HARDDAVY   84 (111)
Q Consensus        10 ~p~~~~~~~~~~~---~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~-~~~d~g~y   84 (111)
                      +|.+...+....+   ..|+.+.|.|.+.+.|.+.+.|+++|..+... ..++...    . ..|.+.++. . .|+|.|
T Consensus         4 ~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~----~-~~L~i~~~~~~-~D~G~Y   77 (382)
T 1cs6_A            4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV----A-GDLVISNPVKA-KDAGSY   77 (382)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE----T-TEEEEESCCHH-HHCEEE
T ss_pred             CCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEee----C-CeEEEeccccc-ccCEEE
Confidence            5677777766555   68999999999999998999999999987543 2344432    2 247777765 3 799999


Q ss_pred             EEEeeeCCCceEeeEEEEEEe
Q psy2442          85 ECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        85 ~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      .|.+.|..|...+....+.+.
T Consensus        78 ~C~a~n~~g~~~s~~~~l~v~   98 (382)
T 1cs6_A           78 QCVATNARGTVVSREASLRFG   98 (382)
T ss_dssp             EEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEEcCCcEEEecceEEEee
Confidence            999999876532333444443

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.21  E-value=2e-10  Score=65.01  Aligned_cols=98  Identities=17%  Similarity=0.245  Sum_probs=63.9

Q ss_pred             eEEecC---CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           4 KVRFLD---PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         4 ~l~v~~---~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .|.|..   +|.+...+. ..+..|++++|.|.+.+. .+.+.|+++|..+..   ....  .. ....|.|.++.. .|
T Consensus        93 ~L~V~~~~~~P~i~~~p~-~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~---~~~~--~~-~~~~l~I~~v~~-~d  163 (242)
T 1p6f_A           93 DLVVTEMYDTPTLSVHPG-PEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV---QRGY--GK-VQAEFPLGPVTT-AH  163 (242)
T ss_dssp             EEEEECCSCCCEEEEESC-SEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE---EEEE--CS-SEEEEEEEECCG-GG
T ss_pred             EEEeecccCCCceEccCC-CccCCCCcEEEEEecCCC-CCEEEEEECCCccCc---cccC--CC-ceEEEEeCCCcc-cc
Confidence            455543   566654443 467899999999998764 458999999876532   1111  11 345599999998 99


Q ss_pred             CeEEEEEeeeCC--CceEeeEEEEEEecCCCC
Q psy2442          81 DAVYECVAENGV--GDAVSAEASLTVYEGEEK  110 (111)
Q Consensus        81 ~g~y~c~~~~~~--~~~~~~~~~l~~~~~~~~  110 (111)
                      +|.|.|.+.|..  ....+..+.|.|.+.+..
T Consensus       164 ~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~  195 (242)
T 1p6f_A          164 RGTYRCFGSYNNHAWSFPSEPVKLLVTGDIEN  195 (242)
T ss_dssp             CEEEEEEEEEETTEECCCCCCEEEEEEC----
T ss_pred             CEEEEEEEECCCCcccCCCCCEEEEEeccCCC
Confidence            999999998753  122356677777765443

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.21  E-value=5.2e-10  Score=56.20  Aligned_cols=82  Identities=15%  Similarity=0.115  Sum_probs=56.3

Q ss_pred             eeeecCCcEEEEEEEeccCCCeEEEEECCeecc------------------CCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVS------------------GTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      ..+..|+++.|.|.........+.|+++.....                  ....|..+.    ....|.|.++.. +|.
T Consensus        10 ~~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~----~ngSL~I~nvt~-~D~   84 (111)
T 2qsq_A           10 FNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIY----PNASLLIQNIIQ-NDA   84 (111)
T ss_dssp             SEEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEEC----TTSCEEECSCCG-GGC
T ss_pred             ceeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEe----cCCcEEEccCcc-cCC
Confidence            467899999999985444444689998753210                  112454443    233499999998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEec
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~  106 (111)
                      |.|.|.+.+..+......+.|.|..
T Consensus        85 G~Ytc~v~~~~~~~~~~~~~L~V~~  109 (111)
T 2qsq_A           85 GFYTLHVIKSDLVNEEATGQFRVYP  109 (111)
T ss_dssp             EEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred             eEEEEEEEeCCCcEEEEEEEEEEec
Confidence            9999999987553235666776654

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.21  E-value=1e-10  Score=59.41  Aligned_cols=90  Identities=16%  Similarity=0.218  Sum_probs=59.4

Q ss_pred             EcCcceeeecCCcEEEEEEEeccCC----CeEEEEECCe-------ec-------------cCCCCceEEEeC--CCCCe
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDPI----PVIQWRKNGK-------RV-------------SGTQSRYMVQEF--PPGGS   68 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~~----~~~~w~~~~~-------~~-------------~~~~~~~~~~~~--~~~~~   68 (111)
                      ..+..+.+..|++++|.|...+.+.    +.+.|++.+.       .+             .....++.....  .....
T Consensus        10 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   89 (126)
T 1eaj_A           10 TPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDA   89 (126)
T ss_dssp             SSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBC
T ss_pred             CCCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeE
Confidence            3444567889999999999876554    3489987642       11             011234443321  00124


Q ss_pred             EEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEec
Q psy2442          69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        69 ~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~  106 (111)
                      .|.|.+++. .|+|.|.|.+.+..+.. ...+.|.|..
T Consensus        90 sL~I~~v~~-~D~G~Y~C~v~~~~~~~-~~~~~L~V~~  125 (126)
T 1eaj_A           90 SINVTNLQL-SDIGTYQCKVKKAPGVA-NKKIHLVVLV  125 (126)
T ss_dssp             CEEECSCCG-GGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             EEEECcCCh-HHCeEEEEEEEcCCccC-CcEEEEEEEc
Confidence            499999998 99999999999976653 6677777654

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=99.21  E-value=2.1e-10  Score=57.23  Aligned_cols=77  Identities=19%  Similarity=0.330  Sum_probs=53.9

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCe-----ec-c-------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK-----RV-S-------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~-----~~-~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.+..+.+.+|++++|.|...+.+.+.+.|++...     .+ .       ....|+.... ......|.|.++.. +
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~-~   81 (108)
T 1qfw_M            4 LTQSPKSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSG-SATDFTLTISSVQA-E   81 (108)
T ss_dssp             EEEECSCEECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCB-CSSEEEEEESSCCT-T
T ss_pred             EEEeCCeEEEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEc-CCCEEEEEECCCCh-h
Confidence            3455666788999999999999877767899998531     11 0       0123444322 11234599999998 9


Q ss_pred             CCeEEEEEeeeC
Q psy2442          80 DDAVYECVAENG   91 (111)
Q Consensus        80 d~g~y~c~~~~~   91 (111)
                      |+|.|.|.+.+.
T Consensus        82 DsG~Y~C~~~~~   93 (108)
T 1qfw_M           82 DFADYHCGQTYN   93 (108)
T ss_dssp             CCSEEEEEECSS
T ss_pred             hCEEEEEEEccC
Confidence            999999999874

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.21  E-value=2.4e-10  Score=62.14  Aligned_cols=93  Identities=17%  Similarity=0.278  Sum_probs=61.9

Q ss_pred             eEEecC---CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           4 KVRFLD---PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         4 ~l~v~~---~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .|.|..   +|.+...+. ..+..|+.++|.|.+.+. .+.+.|++++..+..   .....   .....|.|.++.. .|
T Consensus        90 ~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~---~~~~~---~~~~~L~I~~v~~-~d  160 (188)
T 1oll_A           90 DLVVTEMYDTPTLSVHPG-PEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV---QRGYG---KVQAEFPLGPVTT-AH  160 (188)
T ss_dssp             EEEEESCSCCCEEEEESC-SEEETTCEEEEEEECSSS-CSEEEEEEESSSCEE---EEEEC---SSEEEEEEEECCG-GG
T ss_pred             EEEecccCCCCeEEECCC-CccccCCEEEEEEEcCCC-CCEEEEEECCccccc---cccCC---CceeEEEECCCCc-CC
Confidence            455543   566654443 467899999999997664 468999998765532   11111   1345699999998 99


Q ss_pred             CeEEEEEeeeCCC--ceEeeEEEEEEe
Q psy2442          81 DAVYECVAENGVG--DAVSAEASLTVY  105 (111)
Q Consensus        81 ~g~y~c~~~~~~~--~~~~~~~~l~~~  105 (111)
                      +|.|.|.+.|...  ...+..+.|.|.
T Consensus       161 ~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          161 RGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             CEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             CcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            9999999987531  223456666654

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.21  E-value=4.7e-10  Score=63.44  Aligned_cols=72  Identities=22%  Similarity=0.258  Sum_probs=59.0

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .|.+...+....+..|+.+.|.|.+.+.+.+ .+.|++++..+...            ...|.|.++.. .|.|.|.|.+
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~------------~~~l~i~~~~~-~d~G~Y~C~~   67 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS------------TPSYRITSASV-NDSGEYRCQR   67 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC------------SSEEEESSCCG-GGCEEEEEEE
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc------------CCeEEEecCCc-ccCeEEEEEE
Confidence            3667777777789999999999999888877 89999998887532            23378889988 9999999999


Q ss_pred             eeCCCc
Q psy2442          89 ENGVGD   94 (111)
Q Consensus        89 ~~~~~~   94 (111)
                      .|..+.
T Consensus        68 ~~~~~s   73 (262)
T 3rjd_A           68 GLSGRS   73 (262)
T ss_dssp             SSSCCC
T ss_pred             ecCCcc
Confidence            886543

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.21  E-value=1.9e-11  Score=60.83  Aligned_cols=89  Identities=16%  Similarity=0.220  Sum_probs=59.5

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+.. .+..|++++|.|...+. ...+.|++++.....  .++   ........|.|.++.. .|+|.|.|.+
T Consensus         4 ~kP~i~~~p~~-~v~~G~~VtL~C~~~~~-~~~~~w~k~g~~~~~--~~~---~~~~~~~~l~I~~v~~-~dsG~Y~C~~   75 (105)
T 2vsd_A            4 PQPSLSLHPSQ-GVSLGDTVTLRCHLPRM-AAWVQLWLNGTLRFD--KEK---DKEQDAAEFSFAVTNL-EDAGTYQCRY   75 (105)
T ss_dssp             CCCEEEEESCS-SCCTTCEEEEEEECCSS-CEEEEEEETTEEEEE--EEE---CTTCSEEEEEEECCSG-GGCEEEEEEE
T ss_pred             CCCEEEeCCCC-CcCcCCCEEEEEEcCCC-CcEEEEEECCcccee--eec---cCCCCEEEEEECCCCH-HHCeEEEEEE
Confidence            35666666655 68899999999998764 347789998875431  111   0111335589999998 9999999999


Q ss_pred             eeCC---CceEeeEEEEEEe
Q psy2442          89 ENGV---GDAVSAEASLTVY  105 (111)
Q Consensus        89 ~~~~---~~~~~~~~~l~~~  105 (111)
                      .|..   ....+..+.|.|.
T Consensus        76 ~n~~~~~~s~~Sdpl~L~V~   95 (105)
T 2vsd_A           76 QVSEPLWTSNQSDPVELVLT   95 (105)
T ss_dssp             EEETTEEECCCCCCEEECCC
T ss_pred             EcCCCCcccCCCCCEEEEEE
Confidence            8843   1222455665554

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=99.20  E-value=2.7e-10  Score=56.77  Aligned_cols=77  Identities=21%  Similarity=0.344  Sum_probs=54.6

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--ee---c-c-------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KR---V-S-------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~---~-~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.+..+.+.+|++++|.|...+.+.+.+.|++..  ..   + .       ....|+...... ....|.|.+++. +
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~-~   81 (107)
T 1i8k_A            4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTG-TDFVFTIENTLS-E   81 (107)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEESSCCG-G
T ss_pred             eEeCCCeEEecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccC-CEEEEEECCCCH-H
Confidence            345566678899999999999988777789999853  11   1 0       112455543211 334599999998 9


Q ss_pred             CCeEEEEEeeeC
Q psy2442          80 DDAVYECVAENG   91 (111)
Q Consensus        80 d~g~y~c~~~~~   91 (111)
                      |+|.|.|.+.+.
T Consensus        82 DsG~Y~C~~~~~   93 (107)
T 1i8k_A           82 DVGDYYCLQSFN   93 (107)
T ss_dssp             GCEEEEEEECSS
T ss_pred             HCEEEEEEEeeC
Confidence            999999998774

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.20  E-value=1.6e-10  Score=67.75  Aligned_cols=83  Identities=18%  Similarity=0.316  Sum_probs=63.2

Q ss_pred             eeeecCCcEEEEEE-----EeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          20 QAVKAGGITSFYCI-----ARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        20 ~~~~~g~~~~l~c~-----~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      ..+..|+.+.|.|.     ..+.|.+.+.|++++..+.....++....   ....|.|..+.. .|.|.|.|.+.|..|.
T Consensus       130 ~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~---~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~  205 (339)
T 3o4o_C          130 QILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVR---GTTHLLVHDVAL-EDAGYYRCVLTFAHEG  205 (339)
T ss_dssp             EEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECT---TSSEEEESSCCG-GGCEEEEEEEECCBTT
T ss_pred             eEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcC---CcceEEEcccCH-hhCeEEEEEEEECCCC
Confidence            35778999999999     77888889999999988865445554432   334699999998 9999999999997763


Q ss_pred             ---eEeeEEEEEEec
Q psy2442          95 ---AVSAEASLTVYE  106 (111)
Q Consensus        95 ---~~~~~~~l~~~~  106 (111)
                         .....+.|.|..
T Consensus       206 ~~~~~~~~~~l~V~~  220 (339)
T 3o4o_C          206 QQYNITRSIELRIKK  220 (339)
T ss_dssp             BCCEEEEEEEEEEEC
T ss_pred             eEEEEEEEEEEEEEc
Confidence               124556666654

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.20  E-value=1.6e-10  Score=63.40  Aligned_cols=84  Identities=15%  Similarity=0.215  Sum_probs=57.2

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceE
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAV   96 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~   96 (111)
                      .....+..+..+.+.|.+.+.|.|.+.|++++..+... ..............|.|..+.. .|.|.|.|.+.|..|.. 
T Consensus       125 ~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~s~L~i~~~~~-~d~g~YtC~a~N~~g~~-  201 (218)
T 4frw_A          125 GPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSS-RSFKHSRSAAVTSEFHLVPSRS-MNGQPLTCVVSHPGLLQ-  201 (218)
T ss_dssp             CSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEE-EEEECSSSEEEEEEEEECCCGG-GTTCEEEEEEECTTCSS-
T ss_pred             eeeeeeeeccccceeeeccCCcCceEEEEECCcccccC-ceEecCCcEEEEEEEEEeeCCH-HhCeEEEEEEEeCCCCe-
Confidence            33445667889999999999999999999987765421 1111000000123488888888 99999999999998753 


Q ss_pred             eeEEEEE
Q psy2442          97 SAEASLT  103 (111)
Q Consensus        97 ~~~~~l~  103 (111)
                      ...+.+.
T Consensus       202 ~~~~t~~  208 (218)
T 4frw_A          202 DQRITHI  208 (218)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEEE
Confidence            4444443

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.19  E-value=3.8e-10  Score=63.80  Aligned_cols=92  Identities=18%  Similarity=0.147  Sum_probs=66.5

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEE-eccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      +.|.|..++... .+....+..|+.+.|.|.. .+.+.+.+.|++++..+...     .     ....|.+..+.. .|.
T Consensus        76 ~~l~v~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~-----~-----~~~~l~i~~~~~-~d~  143 (262)
T 3rjd_A           76 IQLEIHRGWLLL-QVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-----H-----WNSNLTILKTNI-SHN  143 (262)
T ss_dssp             EEEEEECSSEEE-EESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----E-----ECCCEEESSCCG-GGC
T ss_pred             EEEEEeccceEe-cCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc-----C-----CCCeEEEEECCh-hhC
Confidence            456666655443 3344567899999999999 66777799999988876321     0     123388999998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      |.|.|.+.|..+. ....+.+.+...
T Consensus       144 G~Y~C~~~n~~~~-~~~~~~l~V~~~  168 (262)
T 3rjd_A          144 GTYHCSGMGKHRY-TSAGISVTVKEL  168 (262)
T ss_dssp             EEEEEEEESSSEE-EEECEEEEEECS
T ss_pred             EEEEEEEeCCCCc-cccceEEEeccC
Confidence            9999999998754 366667777654

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.19  E-value=7.6e-10  Score=61.21  Aligned_cols=70  Identities=14%  Similarity=0.199  Sum_probs=54.5

Q ss_pred             ceeeecCCcEEEEEEEec-cCCCeEEEEECCeeccCCCCceEEEeCC-CCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          19 NQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFP-PGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      ...+.+|+.+.|.|.+.+ .|.|.+.|+++|..+... .++.+.... .....|.|.++.. .|+|.|.|.+.|
T Consensus        11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~-~~~~~~~~~~~g~~~L~I~~v~~-~D~G~Y~C~a~N   82 (207)
T 3rbs_A           11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG-PKYKMHIDRNTGIIEMFMEKLQD-EDEGTYTFQLQD   82 (207)
T ss_dssp             EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSS-SSCEEEECTTTCEEEEEESCCCG-GGCEEEEEEEEE
T ss_pred             ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccC-CCEEEEEeCCCCEEEEEECCCCh-hhCEEEEEEEEC
Confidence            467889999999999864 688899999999998644 444443321 1223489999998 999999999998

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.19  E-value=3.1e-10  Score=63.94  Aligned_cols=92  Identities=20%  Similarity=0.215  Sum_probs=61.1

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--eec---c--------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KRV---S--------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~---~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.+..+.+..|++++|.|...+.+.+.+.|++..  ..+   .        ....++...... ....|.|.++.. .
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~-~   81 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG-TDFTLSINSVET-E   81 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEESSCCG-G
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCC-CEEEEEECCCCh-H
Confidence            445666678999999999999998888899999842  111   0        012455543211 334599999998 9


Q ss_pred             CCeEEEEEeeeCCCceEeeEEEEEEec
Q psy2442          80 DDAVYECVAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        80 d~g~y~c~~~~~~~~~~~~~~~l~~~~  106 (111)
                      |+|.|.|.+.|..+........|.|..
T Consensus        82 D~G~Y~C~~~n~~~~~~~~~~~L~V~~  108 (242)
T 2znx_A           82 DFGMYFCQQSNSXPYTFGGGTKLEITG  108 (242)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             HCEEEEEeEecCCceEECCCEEEEEcC
Confidence            999999999886432112233444444

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.19  E-value=1.9e-11  Score=58.07  Aligned_cols=60  Identities=18%  Similarity=0.375  Sum_probs=46.8

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccC-CCCCCCeEEEEEeee
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPV-RHARDDAVYECVAEN   90 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~d~g~y~c~~~~   90 (111)
                      ++...+..|++++|.|.+.+.|.  +.|+++|..+...           ....|.|.++ .. .|+|.|.|.+..
T Consensus         6 p~~~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~~-----------~~~~L~I~~v~~~-~DsG~Y~C~A~t   66 (82)
T 3r08_E            6 IEYKVSISGTSVELTCPLDSDEN--LKWEKNGQELPQK-----------HDKHLVLQDFSEV-EDSGYYVCYTPA   66 (82)
T ss_dssp             CCCEEEEETTEEEEECSSCCCSS--CEEEETTEECTTC-----------CSSCCBCCSCCTT-TTCSCEEEECSS
T ss_pred             CceeEEEcCCeEEEEEECCCCCc--EEEEECCEECcCC-----------CCCEEEECccCcc-CcCEEEEEEEcc
Confidence            44456778999999999998873  9999999987532           1223778885 76 999999999864

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.19  E-value=4.3e-10  Score=65.73  Aligned_cols=98  Identities=17%  Similarity=0.219  Sum_probs=65.1

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEecc-CCCeEEEEECCeecc----C----CCCceEEEeCC----CCCeEEEEccCCCC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVS----G----TQSRYMVQEFP----PGGSLLRIEPVRHA   78 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~----~----~~~~~~~~~~~----~~~~~l~~~~~~~~   78 (111)
                      .+...+..+.+..|+.+.|.|.+.+. |.+.+.|++++....    .    ...++......    .....|.|.++.. 
T Consensus         5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~-   83 (327)
T 2wng_A            5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP-   83 (327)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG-
T ss_pred             EEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc-
Confidence            44555667889999999999999887 778999999865321    0    11233322100    1334599999998 


Q ss_pred             CCCeEEEEEeeeCCCceE----eeEEEEEEecCCCC
Q psy2442          79 RDDAVYECVAENGVGDAV----SAEASLTVYEGEEK  110 (111)
Q Consensus        79 ~d~g~y~c~~~~~~~~~~----~~~~~l~~~~~~~~  110 (111)
                      .|+|.|.|.+.|..+...    .....|.|...|..
T Consensus        84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~  119 (327)
T 2wng_A           84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSA  119 (327)
T ss_dssp             GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCC
T ss_pred             ccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCC
Confidence            999999999999755311    12346666665544

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.19  E-value=2.4e-10  Score=62.71  Aligned_cols=97  Identities=11%  Similarity=0.064  Sum_probs=60.6

Q ss_pred             ecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEE
Q psy2442           7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYEC   86 (111)
Q Consensus         7 v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c   86 (111)
                      +..+|.+...+. ..+..|++++|.|.+.+ +.+.+.|++++..+... ..............|.|.++.. .|+|.|.|
T Consensus         5 ~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~-~~~~~~~~~~~~~~l~I~~v~~-~D~G~Y~C   80 (201)
T 1nkr_A            5 VHRKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTL-RLIGEHHDGVSKANFSISRMTQ-DLAGTYRC   80 (201)
T ss_dssp             --CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEE-EEECEEETTEEEEEEEESSCCG-GGCEEEEE
T ss_pred             cCCCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcc-eeeeecCCCCceEEEEeccCCc-ccCeEEEE
Confidence            345677766665 57889999999999864 56789999987754311 0000000000234589999998 99999999


Q ss_pred             EeeeCC----CceEeeEEEEEEecC
Q psy2442          87 VAENGV----GDAVSAEASLTVYEG  107 (111)
Q Consensus        87 ~~~~~~----~~~~~~~~~l~~~~~  107 (111)
                      .+.+..    ....+..+.|.|.+.
T Consensus        81 ~a~~~~~~~~~~~~s~~~~l~V~~~  105 (201)
T 1nkr_A           81 YGSVTHSPYQVSAPSDPLDIVIIGL  105 (201)
T ss_dssp             EEEBTTBTTCCCCCCCCEEEEEECS
T ss_pred             eEecCCCCccccCCCCCEEEEeecc
Confidence            997642    111134455555543

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.19  E-value=9.7e-10  Score=61.88  Aligned_cols=79  Identities=14%  Similarity=0.268  Sum_probs=56.2

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC----------------CeeccCC--CCceEEEeCCCCCeEEEEc
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN----------------GKRVSGT--QSRYMVQEFPPGGSLLRIE   73 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~----------------~~~~~~~--~~~~~~~~~~~~~~~l~~~   73 (111)
                      .+.+.+..+.+..|++++|.|...+.+.+.+.|++.                +......  ..++...........|.|.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~   82 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVT   82 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEEC
T ss_pred             ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEEC
Confidence            345566677899999999999999888889999982                2211111  1355444211133459999


Q ss_pred             cCCCCCCCeEEEEEeeeC
Q psy2442          74 PVRHARDDAVYECVAENG   91 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~   91 (111)
                      ++.. .|+|.|.|.+.+.
T Consensus        83 ~v~~-~D~G~Y~C~~~~~   99 (246)
T 4dzb_B           83 SAHP-EDSSFYICSARTS   99 (246)
T ss_dssp             SCCG-GGCEEEEEEECCS
T ss_pred             CCCH-HHCEEEEEEEecC
Confidence            9998 9999999999864

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.18  E-value=8.5e-11  Score=68.47  Aligned_cols=80  Identities=16%  Similarity=0.183  Sum_probs=54.8

Q ss_pred             ceeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442           2 YRKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus         2 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      +++..+..+|.+...+. ..+..|+.++|.|.+.+. .+.+.|++++..+... ..  ..   .....|.|.++.. .|+
T Consensus        16 ~~~~~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~-~~--~~---~~~~~L~I~~v~~-~D~   86 (316)
T 3vh8_G           16 GSHMGGQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPI-FH--GR---IFQESFNMSPVTT-AHA   86 (316)
T ss_dssp             --------CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCH-HH--HC---CBSSCEEECSCCG-GGC
T ss_pred             ccccCCCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCcccee-ec--CC---cceEEEEECCCCc-ccC
Confidence            45566777888887776 467899999999999887 6789999998765321 00  00   0234488999998 999


Q ss_pred             eEEEEEeee
Q psy2442          82 AVYECVAEN   90 (111)
Q Consensus        82 g~y~c~~~~   90 (111)
                      |.|.|.+.|
T Consensus        87 G~Y~C~a~~   95 (316)
T 3vh8_G           87 GNYTCRGSH   95 (316)
T ss_dssp             EEEEEEEBC
T ss_pred             eEEEEEEEc
Confidence            999999875

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=99.18  E-value=1.5e-09  Score=57.07  Aligned_cols=79  Identities=20%  Similarity=0.278  Sum_probs=56.1

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCe-----ec-c-------CCCCceEEEeCCCCCeEEEEccCCC
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK-----RV-S-------GTQSRYMVQEFPPGGSLLRIEPVRH   77 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~-----~~-~-------~~~~~~~~~~~~~~~~~l~~~~~~~   77 (111)
                      +.+.+.+..+.+.+|++++|.|...+.+.+.+.|++...     .+ .       ....|+...... ....|.|.+++.
T Consensus        17 ~~v~q~p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~-~~~sL~I~~v~~   95 (146)
T 2yc1_B           17 IVLTQSPATLSVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSG-TDFTLTISSLEP   95 (146)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCG
T ss_pred             ceEEEeCCEEEEecCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCC-CEEEEEECCCCH
Confidence            445566777889999999999998877667899998531     11 1       012455544322 334599999998


Q ss_pred             CCCCeEEEEEeeeC
Q psy2442          78 ARDDAVYECVAENG   91 (111)
Q Consensus        78 ~~d~g~y~c~~~~~   91 (111)
                       +|+|.|.|.+.+.
T Consensus        96 -~DsG~Y~C~~~~~  108 (146)
T 2yc1_B           96 -EDFAIYYCQQYRY  108 (146)
T ss_dssp             -GGCSEEEEEECSS
T ss_pred             -HHCEEEEEEEecC
Confidence             9999999998875

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=99.18  E-value=1.7e-09  Score=54.24  Aligned_cols=91  Identities=13%  Similarity=0.145  Sum_probs=61.1

Q ss_pred             cCcceeeecCCcEEEEEEEeccCCC-eEEEEECCee-----c-c--C-----CCCceEEEeC-CCCCeEEEEccCCCCCC
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKR-----V-S--G-----TQSRYMVQEF-PPGGSLLRIEPVRHARD   80 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~-----~-~--~-----~~~~~~~~~~-~~~~~~l~~~~~~~~~d   80 (111)
                      .+..+.+..|++++|.|........ .+.|++....     + .  .     ...|+..... ......|.|.+++. +|
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~-~D   85 (113)
T 1zox_A            7 GPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRM-SD   85 (113)
T ss_dssp             CCSEEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCG-GG
T ss_pred             CCCEEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCH-HH
Confidence            4455788999999999998765433 6999986421     1 0  0     1134544321 21234599999998 99


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          81 DAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      +|.|.|.+.+.... ....+.|.|...|
T Consensus        86 sG~Y~C~v~~~~~~-~~~~v~L~V~~~p  112 (113)
T 1zox_A           86 AGIYWCGITKGGLD-PMFKVTVNIGPVP  112 (113)
T ss_dssp             CEEEEEEECCSSSC-CEEEEEEEEECC-
T ss_pred             CEEEEEeeEcCCCC-ccEEEEEEEEcCC
Confidence            99999999886433 3667778777654

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.18  E-value=3.7e-11  Score=66.30  Aligned_cols=74  Identities=16%  Similarity=0.311  Sum_probs=54.8

Q ss_pred             cCCcEEEEEEEeccCCCeEEEEECCeeccCCC-CceEEEeCCCCCeEEEEccC-CCCCCCeEEEEEeeeCCCceEeeEEE
Q psy2442          24 AGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ-SRYMVQEFPPGGSLLRIEPV-RHARDDAVYECVAENGVGDAVSAEAS  101 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~~~~d~g~y~c~~~~~~~~~~~~~~~  101 (111)
                      .|+.++|.|.  +.|.+.+.|++++..+.... .+....    ....|.|.++ .. .|+|.|.|.+.|..|...+..+.
T Consensus       127 ~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~----~~~~L~I~~v~~~-~D~G~Y~C~A~N~~g~~~s~~l~  199 (204)
T 1sy6_A          127 SGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGS----DEDHLSLKEFSEL-EQSGYYVCYPRGSKPEDANFYLY  199 (204)
T ss_dssp             ETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEE----ETTEEEETTCCHH-HHCEEEEEEETTSCGGGSSCEEE
T ss_pred             cCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEec----CCCEEEEeeCCcc-ccCEEEEEEeccCCCCceeEEEE
Confidence            8999999998  67788999999998875321 122111    2345999999 88 99999999999988753345555


Q ss_pred             EEE
Q psy2442         102 LTV  104 (111)
Q Consensus       102 l~~  104 (111)
                      |.+
T Consensus       200 l~~  202 (204)
T 1sy6_A          200 LRA  202 (204)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=99.17  E-value=1.3e-09  Score=54.58  Aligned_cols=78  Identities=21%  Similarity=0.242  Sum_probs=55.3

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCe-----ecc--------CCCCceEEEeCCCCCeEEEEccCCCC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK-----RVS--------GTQSRYMVQEFPPGGSLLRIEPVRHA   78 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~-----~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (111)
                      .+.+.+..+.+.+|++++|.|...+.+.+.+.|++...     .+.        ....++...... ....|.|.+++. 
T Consensus         6 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~-~~~~L~I~~v~~-   83 (111)
T 1i3g_L            6 VLTQSHKFMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSG-TDFTLTISNVQS-   83 (111)
T ss_dssp             CEEESCSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCG-
T ss_pred             eEEEeCCEEEEcCCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCC-CEEEEEECCCCH-
Confidence            34556666788999999999998877667899997532     110        112455543211 334599999998 


Q ss_pred             CCCeEEEEEeeeC
Q psy2442          79 RDDAVYECVAENG   91 (111)
Q Consensus        79 ~d~g~y~c~~~~~   91 (111)
                      +|+|.|.|.+.+.
T Consensus        84 ~DsG~Y~C~~~~~   96 (111)
T 1i3g_L           84 EDLADYFCQQYSS   96 (111)
T ss_dssp             GGCSEEEEEECSS
T ss_pred             HHCEEEEEEEecC
Confidence            9999999998764

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=99.17  E-value=8.2e-10  Score=55.38  Aligned_cols=77  Identities=21%  Similarity=0.405  Sum_probs=54.4

Q ss_pred             eEEcCcceeeecCCcEEEEEEEecc--CCCeEEEEEC--Cee---ccCCCCceEEEe-CCCCCeEEEEccCCCCCCCeEE
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGD--PIPVIQWRKN--GKR---VSGTQSRYMVQE-FPPGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~--~~~---~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~d~g~y   84 (111)
                      +.+.+..+.+.+|++++|.|...+.  +.+.+.|++.  +..   +.....++.... .......|.|.+++. +|+|.|
T Consensus         3 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y   81 (111)
T 2ywz_A            3 VDQTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRV-EDSGTY   81 (111)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCSBTTEEEEEETTTTEEEEEECSCCG-GGCEEE
T ss_pred             eEECCCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEEeCCCCEEEEEECCCCh-hcCEEE
Confidence            4456677789999999999998775  4568999985  221   111224554432 111345599999998 999999


Q ss_pred             EEEeee
Q psy2442          85 ECVAEN   90 (111)
Q Consensus        85 ~c~~~~   90 (111)
                      .|.+.+
T Consensus        82 ~C~~~~   87 (111)
T 2ywz_A           82 KCQADY   87 (111)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999988

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.17  E-value=7e-11  Score=69.12  Aligned_cols=84  Identities=35%  Similarity=0.519  Sum_probs=62.5

Q ss_pred             eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeE
Q psy2442          20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAE   99 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~   99 (111)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+.... ++...........|.|.++.. .|.|.|.|.+.|..|.. ...
T Consensus       133 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~-~~~  209 (334)
T 1ry7_B          133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH-RIGGIKLRHQQWSLVMESVVP-SDRGNYTCVVENKFGSI-RQT  209 (334)
T ss_dssp             EEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTS-STTCCCCCTTTTEEEECSCCG-GGCCCEEEEEEETTEEE-EEE
T ss_pred             EEecCCCcEEEEEEccCCCCCeEEEEECCEECcccc-cccceecccceEEEEECCCCc-ccCEEEEEEEEeCCCCE-EEE
Confidence            467789999999999999989999999988775431 110000111334589999998 99999999999988764 667


Q ss_pred             EEEEEec
Q psy2442         100 ASLTVYE  106 (111)
Q Consensus       100 ~~l~~~~  106 (111)
                      +.+.+..
T Consensus       210 ~~l~V~~  216 (334)
T 1ry7_B          210 YTLDVLE  216 (334)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            7777765

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.17  E-value=5.9e-10  Score=64.49  Aligned_cols=79  Identities=22%  Similarity=0.305  Sum_probs=54.7

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccCCC------eEEEEECC--eecc-----------CCCCceEEEeCCCCCeEEEE
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDPIP------VIQWRKNG--KRVS-----------GTQSRYMVQEFPPGGSLLRI   72 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~------~~~w~~~~--~~~~-----------~~~~~~~~~~~~~~~~~l~~   72 (111)
                      .+...+..+.+.+|++++|.|.+.+.+.+      .+.|++..  ..+.           ....++...... ....|.|
T Consensus       161 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~-~~~~L~I  239 (291)
T 2gki_A          161 VMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSG-TDFTLTI  239 (291)
T ss_dssp             CEECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEE
T ss_pred             eEEcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecC-CEEEEEE
Confidence            34445556778899999999999887665      89999852  2110           002344433211 3345999


Q ss_pred             ccCCCCCCCeEEEEEeeeCC
Q psy2442          73 EPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        73 ~~~~~~~d~g~y~c~~~~~~   92 (111)
                      .++.. .|+|.|.|.+.|..
T Consensus       240 ~~v~~-~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          240 SSVQA-EDLAVYYCKQSYYH  258 (291)
T ss_dssp             SSCCG-GGCEEEEEEEEETT
T ss_pred             CCCCH-HHCEEEEEEEccCC
Confidence            99998 99999999998853

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.17  E-value=4.9e-10  Score=65.95  Aligned_cols=97  Identities=14%  Similarity=0.213  Sum_probs=66.3

Q ss_pred             eeEEecCCCeeEEc----CcceeeecCCcEEEEEEE-----eccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEc
Q psy2442           3 RKVRFLDPPEITLR----PRNQAVKAGGITSFYCIA-----RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIE   73 (111)
Q Consensus         3 ~~l~v~~~p~~~~~----~~~~~~~~g~~~~l~c~~-----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   73 (111)
                      +.|.|..++.+...    +....+..|+.+.|.|..     .+.|.+.+.|++++..+... .++..     ....|.|.
T Consensus       109 ~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~-~~~~~-----~~~~L~i~  182 (349)
T 4dep_C          109 FPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNF-NNVIP-----EGMNLSFL  182 (349)
T ss_dssp             EEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSC-SSEEE-----ETTEEEEE
T ss_pred             EEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCc-cceee-----cCCEEEEe
Confidence            34666654432211    223466789999999985     67788899999999987542 23322     23458999


Q ss_pred             cCCCCCCCeEEEEEeeeCC-Cce--EeeEEEEEEec
Q psy2442          74 PVRHARDDAVYECVAENGV-GDA--VSAEASLTVYE  106 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~-~~~--~~~~~~l~~~~  106 (111)
                      ++.. .|.|.|.|.+.|.. |..  ....+.+.+..
T Consensus       183 ~v~~-~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~  217 (349)
T 4dep_C          183 IALI-SNNGNYTCVVTYPENGRTFHLTRTLTVKVVG  217 (349)
T ss_dssp             SCCG-GGCEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             eeee-cCCcEEEEEEEEeeCCEEEEEEEEEEEEEEc
Confidence            9998 99999999999976 332  24566666654

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.16  E-value=4.5e-10  Score=69.87  Aligned_cols=98  Identities=15%  Similarity=0.163  Sum_probs=66.5

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEe-ccCCCeEEEEECCeeccCCCCceEEEe--CC---CCCeEEEEccCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQE--FP---PGGSLLRIEPVR   76 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~--~~---~~~~~l~~~~~~   76 (111)
                      ..|.|..+|.+  .+....+..|+.+.|.|.+. +.|.+.+.|++++..+... ..+....  ..   .....|.|.++.
T Consensus       222 ~~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~-~~~~~~~~~~~~~~~~~~~L~I~~v~  298 (527)
T 3qs9_E          222 FTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEG-NYFEMSTYSTNRTMIRILFAFVSSVA  298 (527)
T ss_dssp             EEEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGG-GEEEEEEEETTTEEEEEEEEEESSCC
T ss_pred             EEEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCC-ceeeeeeeccCcceeeEEEEEEccCC
Confidence            34666666655  45567788999999999996 8888999999998876432 1111100  00   012348999999


Q ss_pred             CCCCCeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          77 HARDDAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      . .|+|.|.|.+.|.    ....+.|.|..+|
T Consensus       299 ~-~DsG~Y~C~a~N~----~~~~~~L~V~~~p  325 (527)
T 3qs9_E          299 R-NDTGYYTCSSSKH----PSQSALVTIVEKG  325 (527)
T ss_dssp             G-GGCEEEEEEETTE----EEEEEEEEEC--C
T ss_pred             c-ccCeEEEEEEEeC----CCceEEEEEEccC
Confidence            8 9999999999887    2555666665443

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.16  E-value=1.1e-09  Score=63.84  Aligned_cols=99  Identities=14%  Similarity=0.114  Sum_probs=62.2

Q ss_pred             eEEecC---CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           4 KVRFLD---PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         4 ~l~v~~---~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .|.|..   +|.+...+.. .+..|+.++|.|.+.+ +.+.+.|++++..+.......... .......|.|.++.. .|
T Consensus       110 ~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~-~~~~~~~L~i~~v~~-~D  185 (316)
T 3vh8_G          110 VIMVTGNHRKPSLLAHPGP-LVKSGERVILQCWSDI-MFEHFFLHKEGISKDPSRLVGQIH-DGVSKANFSIGPMML-AL  185 (316)
T ss_dssp             EEEEECSSCCCEEEEESCS-EEETTCCEEEEEEESS-CCSEEEEEETTCCSCCEEEECEEE-TTEEEEEEEECSCCG-GG
T ss_pred             EEEEecCCCCCeEEecCCC-ccCCCCeEEEEEcCCC-CCcEEEEEECCCccccceeeeeec-CCCceEEEEECCCCh-hh
Confidence            455532   4555544444 3789999999999854 556889999887663211111111 000234589999998 99


Q ss_pred             CeEEEEEeeeCCCce----EeeEEEEEEec
Q psy2442          81 DAVYECVAENGVGDA----VSAEASLTVYE  106 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~----~~~~~~l~~~~  106 (111)
                      +|.|.|.+.|..+..    .+..+.+.|.+
T Consensus       186 ~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~  215 (316)
T 3vh8_G          186 AGTYRCYGSVTHTPYQLSAPSDPLDIVVTG  215 (316)
T ss_dssp             CEEEEEEEECTTCTTBCCCCCCCEEEEEEC
T ss_pred             CceEEEEEecCCCCccccCCCCCEEEEecC
Confidence            999999999976531    13345555544

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.16  E-value=1.8e-09  Score=59.05  Aligned_cols=76  Identities=14%  Similarity=0.278  Sum_probs=49.9

Q ss_pred             ecCCcEEEEEEEe-ccCCCeEEEEECCeeccCCCCceEEEeCCCCC-eEEEEccCCCCCCCeEEEEEeeeCCCceEeeEE
Q psy2442          23 KAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG-SLLRIEPVRHARDDAVYECVAENGVGDAVSAEA  100 (111)
Q Consensus        23 ~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~  100 (111)
                      ..|+.+.|.|.+. +.|.|.+.|+++|..+.....++ ....+... .......+.. .|.|.|.|.+.|..+.. +..+
T Consensus       119 ~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~-~~~~~~~~~~~~~~~~v~~-~d~g~Y~C~a~n~~~~~-s~~~  195 (201)
T 1dr9_A          119 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTV-SQDPETELYAVSSKLDFNM-TTNHSFMCLIKYGHLRV-NQTF  195 (201)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEE-EECTTTCCEEEEEEEEEET-TSCEEEEEEEEETTCCE-EEEE
T ss_pred             CCCCeEEEEEecCCccCCCEEEEEECCEECccccceE-EecCCCcEEEEEEEEEEEe-cCCCEEEEEEecCccee-eeEE
Confidence            3588899999995 88999999999988876431221 11111011 1112334555 79999999999998864 5554


Q ss_pred             E
Q psy2442         101 S  101 (111)
Q Consensus       101 ~  101 (111)
                      .
T Consensus       196 ~  196 (201)
T 1dr9_A          196 N  196 (201)
T ss_dssp             E
T ss_pred             e
Confidence            4

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.16  E-value=2.4e-10  Score=57.10  Aligned_cols=86  Identities=17%  Similarity=0.251  Sum_probs=57.1

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCC-----eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeE
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIP-----VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAV   83 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~   83 (111)
                      .+|.+...+.. .+.+|+.++|.|.....+..     .+.|++++..+..       ..   ....|.|..+.. .|+|.
T Consensus         7 ~kP~l~~~p~~-~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~-------~~---~~~~l~i~~v~~-~dsG~   74 (108)
T 4hwn_A            7 PAPILRAVPSA-EPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS-------RG---LSSEFQIPTASE-DHSGS   74 (108)
T ss_dssp             CCCEEEEESCS-SCBTTCCEEEEEEC---------CCEEEEEETTEEEEE-------EE---SCCEEEESSCCG-GGCEE
T ss_pred             CCCEEEecCCC-cCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC-------CC---cccEEEeCccCc-ccCeE
Confidence            45666655553 57789999999998754433     3889999886531       11   334589999998 99999


Q ss_pred             EEEEeeeCCCc--eEeeEEEEEEec
Q psy2442          84 YECVAENGVGD--AVSAEASLTVYE  106 (111)
Q Consensus        84 y~c~~~~~~~~--~~~~~~~l~~~~  106 (111)
                      |.|.+.+..+.  ..+..+.|.|.+
T Consensus        75 Y~C~~~~~~~~~~~~S~~l~L~V~g   99 (108)
T 4hwn_A           75 YWCEAATEDNQVWKQSPQLEIRVQG   99 (108)
T ss_dssp             EEEEEECTTSSSEEECCCEEECCBC
T ss_pred             EEEEEEeCCCceeccCCCEEEEEEe
Confidence            99999986542  234455665544

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.16  E-value=6.2e-10  Score=62.34  Aligned_cols=80  Identities=16%  Similarity=0.232  Sum_probs=56.6

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCe--ecc-----------CCCCceEEEe-CCCCCeEEEEccCCC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK--RVS-----------GTQSRYMVQE-FPPGGSLLRIEPVRH   77 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~~-----------~~~~~~~~~~-~~~~~~~l~~~~~~~   77 (111)
                      .+...+..+.+..|+++.|.|.+.+.+.+.+.|++.+.  .+.           ....++.... .......|.|.++..
T Consensus       129 ~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  208 (238)
T 2p1y_A          129 QVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQP  208 (238)
T ss_dssp             CCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCG
T ss_pred             eEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCH
Confidence            44555666778899999999999998888999998531  100           0113444331 111235699999998


Q ss_pred             CCCCeEEEEEeeeCC
Q psy2442          78 ARDDAVYECVAENGV   92 (111)
Q Consensus        78 ~~d~g~y~c~~~~~~   92 (111)
                       .|+|.|.|.+.|..
T Consensus       209 -~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          209 -GDSATYFCAAIDTN  222 (238)
T ss_dssp             -GGCEEEEEEEEETT
T ss_pred             -HHCEEEEEEEeeCC
Confidence             99999999999973

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.15  E-value=9.7e-11  Score=64.58  Aligned_cols=91  Identities=16%  Similarity=0.300  Sum_probs=59.4

Q ss_pred             eeEEec----CCCeeEEcCcceeeecCCcEEEEEEEeccC-C-CeEEEEECCeeccCCCCceEEEeCCC---CCeEEEEc
Q psy2442           3 RKVRFL----DPPEITLRPRNQAVKAGGITSFYCIARGDP-I-PVIQWRKNGKRVSGTQSRYMVQEFPP---GGSLLRIE   73 (111)
Q Consensus         3 ~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~-~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~   73 (111)
                      ++|.|.    .+|.+...+....+..|+.++|.|.+.+.+ + +.+.|+++|..+............++   ....|.+.
T Consensus       103 ~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~  182 (213)
T 3mj8_L          103 TKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMT  182 (213)
T ss_dssp             EEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEE
T ss_pred             eEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEe
Confidence            456666    566666555444455899999999998853 3 38999999998753210000000000   11337788


Q ss_pred             cCCCCCCCeEEEEEeeeCCCc
Q psy2442          74 PVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      .+.. .|.|.|.|.+.|..+.
T Consensus       183 ~~~~-~d~G~Y~C~a~n~~~~  202 (213)
T 3mj8_L          183 ADAW-KSRNTFICKVTHGGNT  202 (213)
T ss_dssp             SHHH-HSCSCEEEEEEETTEE
T ss_pred             HHHc-CCCCEEEEEEEECCcc
Confidence            8877 8999999999998754

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.15  E-value=2.4e-09  Score=53.05  Aligned_cols=86  Identities=16%  Similarity=0.220  Sum_probs=57.6

Q ss_pred             eeeecCCcEEEEEEEec-cCCCeEEEEECCe----eccCCCC-ceEEEeC-CCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          20 QAVKAGGITSFYCIARG-DPIPVIQWRKNGK----RVSGTQS-RYMVQEF-PPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~----~~~~~~~-~~~~~~~-~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ..+..|+.+.|.|.+.+ .+.|.+.|.+.+.    .+..... +...... +-....|.|.++.. +|+|.|.|.+.+..
T Consensus        24 ~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~-sDsG~YrCsAn~~~  102 (122)
T 1xau_A           24 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHL-SDNGSYSCSTNFNS  102 (122)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCG-GGCEEEEEEEEETT
T ss_pred             EEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEE-cCCccEEEEeeCCC
Confidence            46788999999999955 6788999998653    2211111 1112111 11223588999998 99999999999988


Q ss_pred             CceEeeEEEEEEec
Q psy2442          93 GDAVSAEASLTVYE  106 (111)
Q Consensus        93 ~~~~~~~~~l~~~~  106 (111)
                      |...+....|.|-+
T Consensus       103 g~ieSHs~ti~V~~  116 (122)
T 1xau_A          103 QVINSHSVTIHVRE  116 (122)
T ss_dssp             EEEECCCEEEEEC-
T ss_pred             CceeeeEEEEEEEe
Confidence            76556666665543

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=99.15  E-value=2.1e-09  Score=55.18  Aligned_cols=80  Identities=21%  Similarity=0.355  Sum_probs=55.9

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEecc--CCCeEEEEEC--Cee---ccCCCCceEEEeCC-CCCeEEEEccCCCCCCCeE
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGD--PIPVIQWRKN--GKR---VSGTQSRYMVQEFP-PGGSLLRIEPVRHARDDAV   83 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~--~~~---~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~d~g~   83 (111)
                      .+.+.+..+.+.+|++++|.|...+.  +...+.|++.  +..   +.....|+...... .....|.|.+++. +|+|.
T Consensus         2 ~V~Q~p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~R~~~~~~~~~~~~sL~I~~v~~-~DsG~   80 (126)
T 3moq_A            2 WVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRV-EDSGT   80 (126)
T ss_dssp             EEEEECSEEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCG-GGCEE
T ss_pred             ceEECCceEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceEEEEeCCcEEEEEeCCCCEEEEEECcCCh-HhCEE
Confidence            34566777889999999999998765  4567999984  222   11122455543221 2345599999998 99999


Q ss_pred             EEEEeeeCC
Q psy2442          84 YECVAENGV   92 (111)
Q Consensus        84 y~c~~~~~~   92 (111)
                      |.|.+.+..
T Consensus        81 Y~C~~~~~~   89 (126)
T 3moq_A           81 YKCQAFYVF   89 (126)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEcC
Confidence            999987743

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=99.15  E-value=5.1e-09  Score=54.27  Aligned_cols=95  Identities=18%  Similarity=0.202  Sum_probs=62.6

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC---Ceecc---CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN---GKRVS---GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~---~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      .+.+.+..+.+.+|++++|.|...+. ...+.|++.   +..+.   ....++...... ....|.|.+++. +|+|.|.
T Consensus        20 ~v~Q~p~~~~v~~G~svtL~C~~s~~-~~~v~Wyrq~~~g~~~~~l~~~~~rf~~~~~~-~~~~L~I~~~~~-~Dsg~Y~   96 (134)
T 3kg5_A           20 RIWQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQLKLEKGRMEESQNE-SLATLTIQGIRF-EDNGIYF   96 (134)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCCT-TCCCEEEEESSSSSCCEECCCCTTTEEEEECS-SEEEEEECSCCT-TTCEEEE
T ss_pred             EEEEeCCEEEEeCCCCEEEEEEECCC-CceEEEEEECCCCCCcEEEEEECCeEEEEccC-CEEEEEECCCCc-CcCEEEE
Confidence            44566777889999999999998765 467899986   33221   123566554322 445599999998 9999999


Q ss_pred             EEeeeCCC-c-eEeeEEEEEEecCCC
Q psy2442          86 CVAENGVG-D-AVSAEASLTVYEGEE  109 (111)
Q Consensus        86 c~~~~~~~-~-~~~~~~~l~~~~~~~  109 (111)
                      |.+.+..+ . .......|.|.+.|.
T Consensus        97 C~~~~~~~~~~~fg~GT~L~V~~~p~  122 (134)
T 3kg5_A           97 CQQKCNNTSEVYQGCGTELRVMGFST  122 (134)
T ss_dssp             EEEECTTTCCEEECCCEEEEEECC--
T ss_pred             EEEEcCCCCceEECCCEEEEEecCCC
Confidence            99887521 1 112234566665543

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.15  E-value=6.2e-10  Score=61.92  Aligned_cols=88  Identities=20%  Similarity=0.387  Sum_probs=57.9

Q ss_pred             eeEEecCC---CeeEEcCcceeeecCCcE-EEEEEE-eccCCCeEEEEECCeeccCCC---CceEEEeC---CCCC----
Q psy2442           3 RKVRFLDP---PEITLRPRNQAVKAGGIT-SFYCIA-RGDPIPVIQWRKNGKRVSGTQ---SRYMVQEF---PPGG----   67 (111)
Q Consensus         3 ~~l~v~~~---p~~~~~~~~~~~~~g~~~-~l~c~~-~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~---~~~~----   67 (111)
                      +.|.|..+   |.+...+....+..|+.+ .|.|.+ .+.|.+.+.|++++..+....   .++.+...   ....    
T Consensus       108 ~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (231)
T 2pet_A          108 ARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSL  187 (231)
T ss_dssp             EEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEE
T ss_pred             EEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEE
Confidence            35666655   344444555566788887 999999 889999999999999886543   23332210   0011    


Q ss_pred             -eEEEEccCCCCCCCeEEEEEeeeC
Q psy2442          68 -SLLRIEPVRHARDDAVYECVAENG   91 (111)
Q Consensus        68 -~~l~~~~~~~~~d~g~y~c~~~~~   91 (111)
                       ..|.+..... .|.|.|.|.+.|.
T Consensus       188 ~~~L~i~~~~~-dd~g~Y~C~a~n~  211 (231)
T 2pet_A          188 TSTLYLRLRKD-DRDASFHCAAHYS  211 (231)
T ss_dssp             EEEEEEECCGG-GGGCEEEEEEEEE
T ss_pred             EEEEEEecchh-hCCceEEEEEEcC
Confidence             3366654443 4599999999994

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=99.14  E-value=9e-10  Score=57.70  Aligned_cols=77  Identities=19%  Similarity=0.315  Sum_probs=54.5

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--ee---c-c-------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KR---V-S-------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~---~-~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.+..+.+.+|++++|.|.........+.|++..  ..   + .       ....|+...... ....|.|.+++. +
T Consensus         3 v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~-~~~sL~I~~l~~-~   80 (143)
T 3u6r_L            3 LTQSPATLSLSPGERATLSCRASQSVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSG-TDFTLTISNLEP-E   80 (143)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEECSCCG-G
T ss_pred             EEECCCEEEEeCCCCEEEEEEECCCCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEccC-CEEEEEEccCcc-c
Confidence            455666778999999999999877666689999842  11   1 0       112455544222 344599999998 9


Q ss_pred             CCeEEEEEeeeC
Q psy2442          80 DDAVYECVAENG   91 (111)
Q Consensus        80 d~g~y~c~~~~~   91 (111)
                      |+|.|.|.+.+.
T Consensus        81 DsG~Y~C~~~~~   92 (143)
T 3u6r_L           81 DFAVYYCQQRSD   92 (143)
T ss_dssp             GCEEEEEEECSS
T ss_pred             CCEEEEEEEecC
Confidence            999999998764

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=99.14  E-value=9.2e-10  Score=56.67  Aligned_cols=93  Identities=22%  Similarity=0.317  Sum_probs=60.1

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccC-CCeEEEEEC--Cee---c-c--C------CCCceEEEeC-CCCCeEEEEccCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRKN--GKR---V-S--G------TQSRYMVQEF-PPGGSLLRIEPVRH   77 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~--~~~---~-~--~------~~~~~~~~~~-~~~~~~l~~~~~~~   77 (111)
                      .+.+..+.+..|++++|.|...+.. ...+.|++.  +..   + .  .      ...|+..... ......|.|.+++.
T Consensus         5 ~Q~P~~~~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~   84 (129)
T 3rrq_A            5 TFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARR   84 (129)
T ss_dssp             EEECSEEEEETTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCG
T ss_pred             EECCCEEEEeCCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCCh
Confidence            4566778899999999999987654 347899873  211   1 0  0      1235555432 22334599999998


Q ss_pred             CCCCeEEEEEeeeCCCce---EeeEEEEEEecC
Q psy2442          78 ARDDAVYECVAENGVGDA---VSAEASLTVYEG  107 (111)
Q Consensus        78 ~~d~g~y~c~~~~~~~~~---~~~~~~l~~~~~  107 (111)
                       +|+|.|.|.+.+..+..   ......|.|.+.
T Consensus        85 -~Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~  116 (129)
T 3rrq_A           85 -NDSGTYLCGAISLAPKLQIKESLRAELRVTER  116 (129)
T ss_dssp             -GGCEEEEEEEEECGGGCEEEECCCEEEEEECC
T ss_pred             -hHCEEEEEEEEecCCCceeeEeceEEEEEecC
Confidence             99999999998865431   123456666543

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.14  E-value=6.5e-10  Score=63.90  Aligned_cols=96  Identities=17%  Similarity=0.111  Sum_probs=67.3

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEeccCC-CeEEEE-ECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDPI-PVIQWR-KNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      +.|.|..+|.....+....+..|+.+.|.|.+.+ |. +.+.|+ +++..+... .++...    ....|.+.++.. .|
T Consensus        84 ~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~-~~~~~~----~~~~L~i~~v~~-~d  156 (290)
T 2o26_X           84 IYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTD-LTFVPN----PKAGITIKNVKR-AY  156 (290)
T ss_dssp             EEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTT-CEEEEE----TTTEEEEESCCG-GG
T ss_pred             EEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCC-CceeeC----CCCCEEEecccH-HH
Confidence            4677777666555555677889999999999886 66 789995 566655432 344333    234589999998 99


Q ss_pred             Ce-EEEEEeeeCCCceEeeEEEEEEe
Q psy2442          81 DA-VYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        81 ~g-~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      .| .|.|.+.|..+...+..+.+.+.
T Consensus       157 ~G~~Y~C~a~n~~~~~~s~~~~l~V~  182 (290)
T 2o26_X          157 HRLCVRCAAQRDGTWLHSDKFTLKVR  182 (290)
T ss_dssp             TTCEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCCEEEEEEEECCceEEeEEEEEEEE
Confidence            99 99999999854422334556554

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.14  E-value=4.6e-10  Score=68.13  Aligned_cols=85  Identities=15%  Similarity=0.167  Sum_probs=63.5

Q ss_pred             eeEEecCCCeeE-EcCcceeeecCCcEEEEEEEeccCCC---eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCC
Q psy2442           3 RKVRFLDPPEIT-LRPRNQAVKAGGITSFYCIARGDPIP---VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHA   78 (111)
Q Consensus         3 ~~l~v~~~p~~~-~~~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (111)
                      +.|.|..+|.+. ..+....+..|+.+.|.|.+.+.+++   .+.|++++..+.... ..    .......|.|..+.. 
T Consensus        78 ~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~-~~----~~~~~~~L~i~~~~~-  151 (450)
T 1z7z_I           78 TFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP-AV----GEPAEVTTTVLVRRD-  151 (450)
T ss_dssp             CEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE-CC----TTTEEEEEEEECCSS-
T ss_pred             EEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccc-cc----ccccceEEEEEeecc-
Confidence            467777777665 45565678899999999999998887   899999988774321 00    011224588888887 


Q ss_pred             CCCeEEEEEeeeCCC
Q psy2442          79 RDDAVYECVAENGVG   93 (111)
Q Consensus        79 ~d~g~y~c~~~~~~~   93 (111)
                      .|.|.|.|.+.|..|
T Consensus       152 ~d~G~Y~C~a~n~~g  166 (450)
T 1z7z_I          152 HHGANFSCRTELDLR  166 (450)
T ss_dssp             CSSCEEEEEEEEECG
T ss_pred             ccCceEEEEEEcccC
Confidence            899999999998765

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.14  E-value=4.1e-10  Score=61.80  Aligned_cols=92  Identities=17%  Similarity=0.227  Sum_probs=63.3

Q ss_pred             CcceeeecCCcEEEEEEEeccC----CCeEEEEEC----------------CeeccC----CCCceEEEeC--CCCCeEE
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP----IPVIQWRKN----------------GKRVSG----TQSRYMVQEF--PPGGSLL   70 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~----------------~~~~~~----~~~~~~~~~~--~~~~~~l   70 (111)
                      +..+.+..|+.+.|.|...+.+    .+.+.|++.                +.....    ...++.....  ......|
T Consensus         7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L   86 (214)
T 3jz7_A            7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI   86 (214)
T ss_dssp             EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred             CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence            3456788999999999988766    458999873                332221    0133333210  0123448


Q ss_pred             EEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEecCCCC
Q psy2442          71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEK  110 (111)
Q Consensus        71 ~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~~~  110 (111)
                      .|.++.. .|+|.|.|.+.|..+.. ...+.|.|..+|..
T Consensus        87 ~i~~v~~-~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~  124 (214)
T 3jz7_A           87 NVTNLQL-SDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSG  124 (214)
T ss_dssp             EECSCCG-GGCEEEEEEEEETTEEE-EEEEEEEEECCCBS
T ss_pred             EEccCCh-hhCeEEEEEEEeCCCcc-ccEEEEEEEcCCCC
Confidence            9999998 99999999999987764 77778888776643

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.14  E-value=4.8e-10  Score=63.04  Aligned_cols=89  Identities=22%  Similarity=0.261  Sum_probs=60.2

Q ss_pred             cCcceeeecCCcEEEEEEEec---cCCCeEEEEECCeec-----------------------------cCCCCceEEEeC
Q psy2442          16 RPRNQAVKAGGITSFYCIARG---DPIPVIQWRKNGKRV-----------------------------SGTQSRYMVQEF   63 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~---~~~~~~~w~~~~~~~-----------------------------~~~~~~~~~~~~   63 (111)
                      ++..+.+..|+.+.|.|.+.+   .+.+.+.|++++...                             .....+..+.. 
T Consensus         8 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-   86 (250)
T 2fbo_J            8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN-   86 (250)
T ss_dssp             SCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC-
T ss_pred             CCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc-
Confidence            344568889999999999987   777899999876432                             00112222211 


Q ss_pred             CCCCeEEEEccCCCCCCCeEEEEEeeeCCCce----EeeEEEEEEecC
Q psy2442          64 PPGGSLLRIEPVRHARDDAVYECVAENGVGDA----VSAEASLTVYEG  107 (111)
Q Consensus        64 ~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~----~~~~~~l~~~~~  107 (111)
                      + ....|.|.++.. .|+|.|.|.+.+..+..    ....+.|.|..+
T Consensus        87 ~-~~~~L~I~~v~~-~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~  132 (250)
T 2fbo_J           87 L-AAPTLRLTHVHP-QDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH  132 (250)
T ss_dssp             T-TSCCEEECSCCG-GGCEEEEEEEECTTCCSGGGEEEEEEEEEETTT
T ss_pred             C-CcceEEEeeCCh-hhCeEEEEEeccCccCCcccccceeEEEEEecc
Confidence            0 123599999998 99999999999876532    133666776654

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.14  E-value=2.4e-10  Score=65.64  Aligned_cols=99  Identities=14%  Similarity=0.137  Sum_probs=66.9

Q ss_pred             eeEEecCCCee-EEcCcceeeecCCcEEEEEEEeccCC-CeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           3 RKVRFLDPPEI-TLRPRNQAVKAGGITSFYCIARGDPI-PVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         3 ~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      +.|.|..++.. ...+....+..|+.+.|.|.+.+... +.+.|++.+........++...    ....|.|.++.. .|
T Consensus        81 ~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~-~d  155 (292)
T 4dkd_C           81 IHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFS----PWHGFTIHRAKF-IQ  155 (292)
T ss_dssp             ECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSCCEECC----SSSCCEETTCCG-GG
T ss_pred             EEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCCccccc----CCceEEECCCCH-HH
Confidence            35666666653 44556677889999999999987332 6899998743332222333322    222388999998 99


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEEEec
Q psy2442          81 DAVYECVAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~~~~  106 (111)
                      .|.|.|.+.|..+......+.|.|..
T Consensus       156 ~G~Y~C~a~n~~~~~~s~~~~l~V~~  181 (292)
T 4dkd_C          156 SQDYQCSALMGGRKVMSISIRLKVQK  181 (292)
T ss_dssp             CSEEEEEECSTTSCEECCCEEEEEEC
T ss_pred             CeEEEEEEEeCCCceeEEEEEEEEeC
Confidence            99999999987765434466676664

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.14  E-value=2.7e-10  Score=61.26  Aligned_cols=84  Identities=21%  Similarity=0.244  Sum_probs=58.9

Q ss_pred             eeeecCCcEEEEEEEeccCCCeEEEEECCeeccC-----------CCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSG-----------TQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      +.+..|+.++|.|.... +.+.+.|++.+..+..           ...|+.+..   ....|.|.++.. .|+|.|.|.+
T Consensus         5 v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~---~~~sL~I~~v~~-~DsG~Y~C~~   79 (171)
T 1ccz_A            5 IYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDT---VSGSLTIYNLTS-SDEDEYEMES   79 (171)
T ss_dssp             EEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECT---TTCCEEECSCCG-GGCEEEEEEC
T ss_pred             EEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeC---CCCeEEECCCCh-hhCceEEEEE
Confidence            56788999999998844 7779999998764321           012333221   234499999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEecCCCCC
Q psy2442          89 ENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      .|..+   ...+.|.|..++..|
T Consensus        80 ~n~~~---~~~~~L~V~~~~~~p   99 (171)
T 1ccz_A           80 PNITD---TMKFFLYVLEMVSKP   99 (171)
T ss_dssp             TTCCS---CEEEEEEEECCCCCC
T ss_pred             eCCCC---cEEEEEEEECcCCCC
Confidence            88765   455667777665443

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.13  E-value=1.1e-09  Score=62.88  Aligned_cols=82  Identities=20%  Similarity=0.279  Sum_probs=59.1

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCe-----ecc--------CCCCceEEEeCCCCCeEEEEccCC
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK-----RVS--------GTQSRYMVQEFPPGGSLLRIEPVR   76 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~-----~~~--------~~~~~~~~~~~~~~~~~l~~~~~~   76 (111)
                      .+.+...+..+.+..|++++|.|...+.+.+.+.|++.+.     .+.        ....++...... ....|.|.++.
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~   90 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSG-TDFTLTISSLQ   90 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCC
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccC-CeEEEEEccCC
Confidence            3455666777889999999999999988888999998532     110        112455544211 33459999999


Q ss_pred             CCCCCeEEEEEeeeCCC
Q psy2442          77 HARDDAVYECVAENGVG   93 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~   93 (111)
                      . .|+|.|.|.+.|..+
T Consensus        91 ~-~DsG~Y~C~~~n~~~  106 (276)
T 3auv_A           91 P-EDFATYYCQQHYTTP  106 (276)
T ss_dssp             G-GGCEEEEEEECSSSS
T ss_pred             h-hhCEEEEEEEecCCc
Confidence            8 999999999988643

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.13  E-value=2.9e-10  Score=61.81  Aligned_cols=67  Identities=15%  Similarity=0.265  Sum_probs=51.4

Q ss_pred             eeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEcc-CCCCCCCeEEEEEeeeCCCceEeeE
Q psy2442          21 AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEP-VRHARDDAVYECVAENGVGDAVSAE   99 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~d~g~y~c~~~~~~~~~~~~~   99 (111)
                      ....|+.+.|.|.+.+ +. .+.|+++|..+...           ....|.|.+ +.. .|+|.|.|.+.|..|.. ...
T Consensus        10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~-----------~~~~L~I~~~~~~-~D~G~Y~C~a~n~~g~~-~~~   74 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK-----------HDKHLVLQDFSEV-EDSGYYVCYTPASNKNT-YLY   74 (186)
T ss_dssp             EEEETTEEEEECSSCC-CT-TCEEEETTEEECSC-----------CCSEEEEESCCTT-TSCEEEEEECSSCCCCC-CEE
T ss_pred             EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC-----------CCCEEEECCCCcc-ccCEEEEEEEEeCCCcE-EEE
Confidence            4467999999999877 43 59999999987642           123488899 888 99999999999987752 444


Q ss_pred             EEE
Q psy2442         100 ASL  102 (111)
Q Consensus       100 ~~l  102 (111)
                      +.+
T Consensus        75 ~~~   77 (186)
T 1jbj_A           75 LKA   77 (186)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            444

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.13  E-value=9.7e-10  Score=65.13  Aligned_cols=86  Identities=13%  Similarity=0.019  Sum_probs=61.7

Q ss_pred             cceeeecCCcEEEEEEEec-----cCCCeEEEEECCeeccCC-------CCceEEEeC---------CCCCeEEEEccCC
Q psy2442          18 RNQAVKAGGITSFYCIARG-----DPIPVIQWRKNGKRVSGT-------QSRYMVQEF---------PPGGSLLRIEPVR   76 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~-----~~~~~~~w~~~~~~~~~~-------~~~~~~~~~---------~~~~~~l~~~~~~   76 (111)
                      ....+..|+.+.|.|.+.+     .|.+.+.|++++..+...       ..++.....         ......|.|.++.
T Consensus       184 ~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  263 (363)
T 1wio_A          184 SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQAL  263 (363)
T ss_dssp             EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBC
T ss_pred             CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCC
Confidence            3456778999999998877     667799999998876542       233333210         1123369999999


Q ss_pred             CCCCCeEEEEEeeeC--CCceEeeEEEEEEe
Q psy2442          77 HARDDAVYECVAENG--VGDAVSAEASLTVY  105 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~--~~~~~~~~~~l~~~  105 (111)
                      . .|+|.|.|.+.|.  .|.. ...+.|.|.
T Consensus       264 ~-~d~G~Y~C~a~n~~~~g~~-~~~~~l~V~  292 (363)
T 1wio_A          264 P-QYAGSGNLTLALEAKTGKL-HQEVNLVVM  292 (363)
T ss_dssp             G-GGCEEEEEEECBTTTTCCE-EEEEEEEEE
T ss_pred             c-CcCcEEEEEEEEhhhcCeE-EEEEeEEEE
Confidence            8 9999999999999  8864 666666554

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.13  E-value=1.3e-09  Score=60.03  Aligned_cols=75  Identities=15%  Similarity=0.268  Sum_probs=53.7

Q ss_pred             CcceeeecCCcEEEEEEEeccC---CCeEEEEECC--eec-----------cCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP---IPVIQWRKNG--KRV-----------SGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~--~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      +..+.+..|+.+.|.|.+.+.+   .+.+.|++.+  ..+           .....++...... ....|.|.++.. .|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~-~D   84 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIG-DKAALTITGAQT-ED   84 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCG-GG
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeC-CEEEEEECCCCc-cC
Confidence            6667889999999999998876   3689999852  221           0112455443211 334599999998 99


Q ss_pred             CeEEEEEeeeCCC
Q psy2442          81 DAVYECVAENGVG   93 (111)
Q Consensus        81 ~g~y~c~~~~~~~   93 (111)
                      +|.|.|.+.|..+
T Consensus        85 ~G~Y~C~~~~~~~   97 (212)
T 1q0x_L           85 EAIYFCALWSNNK   97 (212)
T ss_dssp             CEEEEEEEECSSC
T ss_pred             CEEEEEEEecCch
Confidence            9999999998765

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.12  E-value=2.3e-09  Score=60.88  Aligned_cols=82  Identities=16%  Similarity=0.362  Sum_probs=56.6

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCe--ecc--------------CCCCceEEEeCCCCCeEEEEc
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK--RVS--------------GTQSRYMVQEFPPGGSLLRIE   73 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~~--------------~~~~~~~~~~~~~~~~~l~~~   73 (111)
                      ++.+...+..+.+..|++++|.|.+.+. .+.+.|++...  .+.              ....++...........|.|.
T Consensus       137 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~  215 (256)
T 3tf7_C          137 EAAVTQSPRNKVTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLE  215 (256)
T ss_dssp             -CCEEESCSEEEEETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEES
T ss_pred             ccEEEecCCEEEEeCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEEC
Confidence            5566677777788899999999999876 66899998321  110              001233333212233459999


Q ss_pred             cCCCCCCCeEEEEEeeeCCC
Q psy2442          74 PVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~   93 (111)
                      ++.. .|+|.|.|.+.|..|
T Consensus       216 ~v~~-~DsG~Y~C~a~n~~g  234 (256)
T 3tf7_C          216 SASP-SQTSLYFCASSDAPG  234 (256)
T ss_dssp             SCCG-GGCEEEEEEEEEETT
T ss_pred             CCCH-HHCEEEEEEecCCCC
Confidence            9998 999999999988755

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.12  E-value=1.2e-09  Score=61.63  Aligned_cols=100  Identities=17%  Similarity=0.296  Sum_probs=55.5

Q ss_pred             eeEEecCCCeeEEcCcceeeecCCcEEEEEEEec-cCCC-eEEEEECCeeccCC----CC--ceEEEeCCCC----CeEE
Q psy2442           3 RKVRFLDPPEITLRPRNQAVKAGGITSFYCIARG-DPIP-VIQWRKNGKRVSGT----QS--RYMVQEFPPG----GSLL   70 (111)
Q Consensus         3 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~----~~--~~~~~~~~~~----~~~l   70 (111)
                      ..|.|..+|.+...+.. ....|+.+.|.|.+.+ .|.+ .+.|++++..+...    ..  ..........    ...|
T Consensus       112 ~~L~V~~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L  190 (248)
T 3pv7_A          112 VQLEVVASPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCL  190 (248)
T ss_dssp             EEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEE
T ss_pred             EEEEEecCCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEE
Confidence            45777778887655543 3456777889999988 7888 89999988643211    00  0011111101    1236


Q ss_pred             EEccCCCCCCCeEEEEEeeeCCCc-eEeeEEEEEE
Q psy2442          71 RIEPVRHARDDAVYECVAENGVGD-AVSAEASLTV  104 (111)
Q Consensus        71 ~~~~~~~~~d~g~y~c~~~~~~~~-~~~~~~~l~~  104 (111)
                      .+..... .|.|.|.|.+.|..+. .....+.|.|
T Consensus       191 ~i~~~~~-~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          191 KLNSSQE-DPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             ECC--CC-CTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             EEcCccc-cCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            6666666 7889999999998764 2344555555

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.12  E-value=4.7e-09  Score=59.03  Aligned_cols=78  Identities=23%  Similarity=0.404  Sum_probs=54.8

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--------------CeeccCC--C-CceEEEeCCCCCeEEEEc
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--------------GKRVSGT--Q-SRYMVQEFPPGGSLLRIE   73 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--------------~~~~~~~--~-~~~~~~~~~~~~~~l~~~   73 (111)
                      +.+...+..+.+..|++++|.| ..+.+.+.+.|++.              +......  . .++...........|.|.
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~   81 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ   81 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence            3455667777899999999999 66677789999981              2111111  1 455554322234469999


Q ss_pred             cCCCCCCCeEEEEEeee
Q psy2442          74 PVRHARDDAVYECVAEN   90 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~   90 (111)
                      ++.. .|+|.|.|.+.+
T Consensus        82 ~v~~-~D~G~Y~C~~~~   97 (245)
T 4ei6_B           82 PTAL-EDSAVYFCASSF   97 (245)
T ss_dssp             SCCG-GGCEEEEEEEEC
T ss_pred             CCCH-hHCEEEEEEEcc
Confidence            9998 999999999985

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.12  E-value=6.1e-10  Score=63.01  Aligned_cols=93  Identities=18%  Similarity=0.094  Sum_probs=61.6

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      ..+|.+...+.. .+..|++++|.|...+ +...+.|++++..+........   .......|.|.++.. .|+|.|.|.
T Consensus         5 ~~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~---~~~~~~~L~I~~v~~-~DsG~Y~C~   78 (242)
T 1p6f_A            5 LPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPP---ERINKVKFYIPDMNS-RMAGQYSCI   78 (242)
T ss_dssp             CCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSC---TTCCEEEEEECSCCG-GGCEEEEEE
T ss_pred             CCCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCcccccccccc---CCcceeEEEecCCCc-ccCeEEEEE
Confidence            456777766665 7889999999999865 3458899999876531100000   001334589999998 999999999


Q ss_pred             eeeCCCc-eEeeEEEEEEec
Q psy2442          88 AENGVGD-AVSAEASLTVYE  106 (111)
Q Consensus        88 ~~~~~~~-~~~~~~~l~~~~  106 (111)
                      +.+..+. ..+..+.|.|.+
T Consensus        79 ~~~~~~~s~~S~~~~L~V~~   98 (242)
T 1p6f_A           79 YRVGELWSEPSNLLDLVVTE   98 (242)
T ss_dssp             EEETTEECCCCCCEEEEEEC
T ss_pred             EecCCccccCCcceEEEeec
Confidence            9875431 123455555554

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.12  E-value=1.5e-09  Score=60.85  Aligned_cols=92  Identities=23%  Similarity=0.317  Sum_probs=61.2

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccC----CCeEEEEECC--eec-----------cCCCCceEEEeCCCCCeEEEEccC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDP----IPVIQWRKNG--KRV-----------SGTQSRYMVQEFPPGGSLLRIEPV   75 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~--~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~   75 (111)
                      +...+..+.+..|++++|.|.+.+.+    .+.+.|++..  ..+           .....++...... ....|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v   82 (240)
T 1moe_A            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSR-TDFTLIIDPV   82 (240)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSC
T ss_pred             eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecC-CeEEEEEcCC
Confidence            34556667889999999999998887    6689999852  111           0112455543311 3335999999


Q ss_pred             CCCCCCeEEEEEeeeCCCceEeeEEEEEEec
Q psy2442          76 RHARDDAVYECVAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~  106 (111)
                      .. .|+|.|.|.+.|..+........|.|..
T Consensus        83 ~~-~D~G~Y~C~~~n~~~~~~~~~~~l~V~~  112 (240)
T 1moe_A           83 EA-DDVATYYCQQTNEDPYTFGGGTKLEIKG  112 (240)
T ss_dssp             CG-GGCEEEEEEECSSSSCCBCCCEEEEECC
T ss_pred             Ch-hhCEEEEEEEccCCceeecCCEEEEEec
Confidence            98 9999999999987543112334455544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.12  E-value=3.1e-11  Score=71.29  Aligned_cols=91  Identities=21%  Similarity=0.235  Sum_probs=67.0

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe-EEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA-VYEC   86 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g-~y~c   86 (111)
                      ..+|.+...+....+..|+.+.+.|.+.+.|.+.+.|++++..+.......    .......|.+..+.. .|.| .|.|
T Consensus       156 c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~-~D~G~~Y~C  230 (347)
T 2ifg_A          156 CGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS----GGLPSLGLTLANVTS-DLNRKNVTC  230 (347)
T ss_dssp             CCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC----CCSSEEEEEEESCCS-TTTTCCEEE
T ss_pred             CCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccc----eecccceEEEeeCCh-HHCCCeEEE
Confidence            357888777777889999999999999999999999999886543211111    011345589999998 9999 9999


Q ss_pred             EeeeCCCceEeeEEEEEE
Q psy2442          87 VAENGVGDAVSAEASLTV  104 (111)
Q Consensus        87 ~~~~~~~~~~~~~~~l~~  104 (111)
                      .+.|..|.. ...+.+.|
T Consensus       231 ~a~n~~g~~-~~~~~l~V  247 (347)
T 2ifg_A          231 WAENDVGRA-EVSVQVNV  247 (347)
T ss_dssp             CCEETTEEC-CEEECCCC
T ss_pred             EEEcCCCCE-EEEEEEEE
Confidence            999987653 44444433

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.12  E-value=8.1e-09  Score=57.44  Aligned_cols=86  Identities=20%  Similarity=0.196  Sum_probs=56.2

Q ss_pred             cceeeecCCcEEEEEEEeccCCC---eEEEEECCeec-----------c-----CCCCceEEEeCC--CCCeEEEEccCC
Q psy2442          18 RNQAVKAGGITSFYCIARGDPIP---VIQWRKNGKRV-----------S-----GTQSRYMVQEFP--PGGSLLRIEPVR   76 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~-----------~-----~~~~~~~~~~~~--~~~~~l~~~~~~   76 (111)
                      ..+.+..|++++|.|.+.+.+.+   .+.|++++...           .     ....+.......  .....|.|.++.
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            44678899999999998766544   68999865321           1     001222222111  123459999999


Q ss_pred             CCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          77 HARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      . .|+|.|.|.+.|..+.. ...+.+.+.
T Consensus        92 ~-~D~G~Y~C~a~n~~~~~-~~~v~~~~~  118 (226)
T 4f80_A           92 A-SDSGKYLCYFQDGDFYE-KALVELKVA  118 (226)
T ss_dssp             G-GGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             h-HHCeeEEEEEECCCcEE-EEEEEEeec
Confidence            8 99999999999977653 555544443

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.12  E-value=6.1e-10  Score=60.34  Aligned_cols=80  Identities=18%  Similarity=0.222  Sum_probs=55.7

Q ss_pred             eEEec---CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           4 KVRFL---DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         4 ~l~v~---~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .|.|.   .+|.+...+ ...+..|+.+.|.|.+.+.+ +.+.|++++..+... .....     ....|.|.++.. .|
T Consensus        85 ~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~-~~~~~-----~~~~L~i~~v~~-~D  155 (184)
T 2gi7_A           85 ELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYK-NPERW-----YRASFPIITVTA-AH  155 (184)
T ss_dssp             EEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSC-CCCEE-----EEESSSEEEETT-CC
T ss_pred             EEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcce-ecCCC-----ceEEEEEccCCc-cC
Confidence            45553   355565545 34677899999999976654 589999998876532 11111     223377888888 99


Q ss_pred             CeEEEEEeeeCC
Q psy2442          81 DAVYECVAENGV   92 (111)
Q Consensus        81 ~g~y~c~~~~~~   92 (111)
                      .|.|.|.+.|..
T Consensus       156 ~G~Y~C~a~n~~  167 (184)
T 2gi7_A          156 SGTYRCYSFSSR  167 (184)
T ss_dssp             SEEEEEEEECTT
T ss_pred             CeEEEEEEEeCC
Confidence            999999999964

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=99.11  E-value=1.3e-09  Score=54.90  Aligned_cols=77  Identities=21%  Similarity=0.336  Sum_probs=53.5

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCC------CeEEEEECC--ee---c-c-------CCCCceEEEeCCCCCeEEEEc
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPI------PVIQWRKNG--KR---V-S-------GTQSRYMVQEFPPGGSLLRIE   73 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~------~~~~w~~~~--~~---~-~-------~~~~~~~~~~~~~~~~~l~~~   73 (111)
                      +.+.+..+.+.+|++++|.|...+.+.      +.+.|++..  ..   + .       ....|+...... ....|.|.
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~   82 (114)
T 1eeq_A            4 LTQSPDSLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSG-TDFTLTIS   82 (114)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEES
T ss_pred             eEecCCeEEEcCCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecC-CEEEEEEC
Confidence            345566678999999999999877652      579999853  11   1 0       112455543211 33459999


Q ss_pred             cCCCCCCCeEEEEEeeeC
Q psy2442          74 PVRHARDDAVYECVAENG   91 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~   91 (111)
                      +++. +|+|.|.|.+.+.
T Consensus        83 ~v~~-~DsG~Y~C~~~~~   99 (114)
T 1eeq_A           83 SLQA-EDVAVYYCQQYYS   99 (114)
T ss_dssp             SCCG-GGCEEEEEEECSS
T ss_pred             CCCc-ccCEEEEEEEeeC
Confidence            9998 9999999998874

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.11  E-value=3.4e-10  Score=62.40  Aligned_cols=90  Identities=17%  Similarity=0.321  Sum_probs=57.8

Q ss_pred             eEEecC---CCeeEEcCcceeeecCCcEEEEEEEec-cCCC-eEEEEECCeeccCC-CCceEEEeCCCC----CeEEEEc
Q psy2442           4 KVRFLD---PPEITLRPRNQAVKAGGITSFYCIARG-DPIP-VIQWRKNGKRVSGT-QSRYMVQEFPPG----GSLLRIE   73 (111)
Q Consensus         4 ~l~v~~---~p~~~~~~~~~~~~~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~-~~~~~~~~~~~~----~~~l~~~   73 (111)
                      .|.|..   +|.+...........|+.+.|.|.+.+ .|.+ .+.|+++|..+... ..........+.    ...|.|.
T Consensus       103 ~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~  182 (213)
T 3d9a_L          103 KLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT  182 (213)
T ss_dssp             EEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEE
T ss_pred             EEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEe
Confidence            566654   566554333333447889999999987 5554 79999999887532 000000000001    1258888


Q ss_pred             cCCCCCCCeEEEEEeeeCCCc
Q psy2442          74 PVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      .+.. .|.|.|.|.+.|....
T Consensus       183 ~~~~-~d~G~Y~C~a~n~~~~  202 (213)
T 3d9a_L          183 KDEY-ERHNSYTCEATHKTST  202 (213)
T ss_dssp             HHHH-HHCCEEEEEEECTTCS
T ss_pred             cccc-CCCCEEEEEEEEccCC
Confidence            8887 8999999999997643

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.10  E-value=2.7e-10  Score=66.57  Aligned_cols=91  Identities=25%  Similarity=0.341  Sum_probs=53.9

Q ss_pred             ecCCCeeEEcCcceeeecCCcEEEEEEEeccCC-C-eEEEEECCeeccCCC-CceEEEeCCCCC----eEEEEccCCCCC
Q psy2442           7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDPI-P-VIQWRKNGKRVSGTQ-SRYMVQEFPPGG----SLLRIEPVRHAR   79 (111)
Q Consensus         7 v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~-~-~~~w~~~~~~~~~~~-~~~~~~~~~~~~----~~l~~~~~~~~~   79 (111)
                      +..+|.+...+..  +..|+.+.|.|.+.+.++ + .+.|+++|..+.... .... ...+ ..    ..|.+..+.. .
T Consensus       219 v~~~P~i~~~~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~-~~~~-g~~~~~~~L~i~~~~~-~  293 (327)
T 2wng_A          219 IRVPPTLEVTQQP--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVT-ENKD-GTYNWMSWLLVNVSAH-R  293 (327)
T ss_dssp             BCBCCEEEEEEEC--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCE-ECTT-SCEEEEEEEEC-------
T ss_pred             cCCCCEEEEecCC--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceE-ECCC-CcEEEEEEEEEccccc-c
Confidence            3456666544433  668999999999998544 4 799999998874210 1111 1111 11    3366777777 8


Q ss_pred             CCeEEEEEeeeCCCceEeeEEEE
Q psy2442          80 DDAVYECVAENGVGDAVSAEASL  102 (111)
Q Consensus        80 d~g~y~c~~~~~~~~~~~~~~~l  102 (111)
                      |.|.|.|.+.|..+......+.+
T Consensus       294 d~G~Y~C~a~N~~~~~~s~~~~~  316 (327)
T 2wng_A          294 DDVKLTCQVEHDGQPAVSKSHDL  316 (327)
T ss_dssp             -CCEEEEEEEETTCCCEEEEEEC
T ss_pred             CCCEEEEEEEeCCCCCchhheEE
Confidence            99999999999988654555443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.10  E-value=3.9e-10  Score=61.61  Aligned_cols=86  Identities=12%  Similarity=0.139  Sum_probs=60.2

Q ss_pred             CcceeeecCCcEEEEEEEec-cCCCeEEEEECCeecc---C-C---------C----CceEEEeCCCCCeEEEEccCCCC
Q psy2442          17 PRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVS---G-T---------Q----SRYMVQEFPPGGSLLRIEPVRHA   78 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~---~-~---------~----~~~~~~~~~~~~~~l~~~~~~~~   78 (111)
                      +..+.+..|++++|.|...+ .+.+.+.|++++..+.   . .         .    .|+.+.    ....|.|.++.. 
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~----~~~sL~I~~v~~-   79 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT----QSYSLQLSNLKM-   79 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC----TTCCEEECSCCG-
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC----CCeEEEECCCCc-
Confidence            44567889999999999865 4446899999875431   1 0         0    122222    234499999998 


Q ss_pred             CCCeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          79 RDDAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        79 ~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .|+|.|.|.+.+..+.. ...+.|.|..++
T Consensus        80 ~D~G~Y~C~~~~~~~~~-~~~~~L~V~~~~  108 (193)
T 2if7_A           80 EDTGSYRAQISTKTSAK-LSSYTLRILRQL  108 (193)
T ss_dssp             GGCEEEEEEEECSSCEE-EEEEEEEEECCC
T ss_pred             ccCceEEEEEEecCCCe-EEEEEEEEEccC
Confidence            99999999999887653 456677776544

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.10  E-value=1.3e-09  Score=59.94  Aligned_cols=83  Identities=20%  Similarity=0.330  Sum_probs=56.8

Q ss_pred             ceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442          19 NQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      .+.+..|++++|.|.+.  +.+.+.|++.  +..+.           ....++...... ....|.|.++.. .|+|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~-~D~G~Y~   84 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSG-NTASLTVSGLQT-DDEAVYY   84 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-TEEEEEEESCCG-GGCEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccC-CEEEEEECCCCh-hHCEEEE
Confidence            56888999999999988  7779999983  22110           012355443311 344599999998 9999999


Q ss_pred             EEeeeCCC-ceEeeEEEEEEe
Q psy2442          86 CVAENGVG-DAVSAEASLTVY  105 (111)
Q Consensus        86 c~~~~~~~-~~~~~~~~l~~~  105 (111)
                      |.+.|..+ ........+.|.
T Consensus        85 C~~~~~~~~~~~~~~~~l~V~  105 (211)
T 3tv3_L           85 CGSLVGNWDVIFGGGTKLTVL  105 (211)
T ss_dssp             EEEEETTTEEEECCCEEEEEC
T ss_pred             EEEecCCCceeECCCceEEEe
Confidence            99999776 222344555555

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.10  E-value=1.5e-09  Score=55.56  Aligned_cols=88  Identities=24%  Similarity=0.283  Sum_probs=56.8

Q ss_pred             EcCcceeeecCCcEEEEEEEeccCC---CeEEEEECCeec-----------cC-----CCCceEEEeCC--CCCeEEEEc
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDPI---PVIQWRKNGKRV-----------SG-----TQSRYMVQEFP--PGGSLLRIE   73 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~~---~~~~w~~~~~~~-----------~~-----~~~~~~~~~~~--~~~~~l~~~   73 (111)
                      .++..+....|++++|.|.......   ..+.|++.+...           ..     ...|..+....  .....|.|.
T Consensus        10 ~~~~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~   89 (125)
T 4gos_A           10 VTTVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLK   89 (125)
T ss_dssp             EEEECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEES
T ss_pred             ccCceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEEC
Confidence            3444567778999999999764333   268999864311           00     01233332111  012349999


Q ss_pred             cCCCCCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442          74 PVRHARDDAVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      +++. +|+|.|.|.+.+..+.. ...+.|.|
T Consensus        90 ~v~~-~D~G~Y~C~v~~~~g~~-~~~v~LkV  118 (125)
T 4gos_A           90 NVQL-TDAGTYKCYIITSKGKG-NANLEYKT  118 (125)
T ss_dssp             SCCG-GGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             CCCh-HHCEEEEEEEEeCCCeE-EEEEEEEE
Confidence            9998 99999999999987764 66666655

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=99.10  E-value=2.9e-10  Score=57.93  Aligned_cols=89  Identities=16%  Similarity=0.212  Sum_probs=59.9

Q ss_pred             ceeeecCCcEEEEEEE-eccCCCeEEEEECCe-ecc------------CCCCceEEEeCCCCCeEEEEccCCCCCCCeEE
Q psy2442          19 NQAVKAGGITSFYCIA-RGDPIPVIQWRKNGK-RVS------------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~-~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y   84 (111)
                      .+.+..|++++|.|.. .......+.|++... .+.            .-..|+.+..   ....|.|.+++. .|+|.|
T Consensus        13 pv~~~~G~~VtL~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~---~~~sL~I~nv~~-~DsG~Y   88 (121)
T 2edo_A           13 HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDP---QSGALYISKVQK-EDNSTY   88 (121)
T ss_dssp             CCEEETTSCEEECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECT---TTCCEEESSCCG-GGCSEE
T ss_pred             EEEEEeCCCEEEeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeC---CCceEEEeCCCH-HHCeEE
Confidence            3678899999999976 333344789998653 111            0112333321   223499999998 999999


Q ss_pred             EEEeeeCCCceEeeEEEEEEecCCCCC
Q psy2442          85 ECVAENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        85 ~c~~~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      .|.+.+..+......+.|.|..++..|
T Consensus        89 ~c~v~~~~~~~~~~~~~L~V~~~~~~P  115 (121)
T 2edo_A           89 IMRVLKKTGNEQEWKIKLQVLDPVPKP  115 (121)
T ss_dssp             EEEEEETTTEEEECCEECEEECCSCCC
T ss_pred             EEEEEcCCCcEEEEEEEEEEECCCCCC
Confidence            999987654334667788888777665

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=99.10  E-value=9.9e-10  Score=55.19  Aligned_cols=79  Identities=19%  Similarity=0.276  Sum_probs=53.9

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--eecc---------CCCCceEEEeC--CCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KRVS---------GTQSRYMVQEF--PPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~~---------~~~~~~~~~~~--~~~~~~l~~~~~~~~~   79 (111)
                      +.+.+..+.+..|++++|.|...+.+ +.+.|++..  ..+.         ....++.....  ......|.|.+++. +
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~-~   81 (113)
T 1h5b_A            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQL-E   81 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCG-G
T ss_pred             eEECCCEEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCCh-h
Confidence            34556667889999999999987754 589999753  1110         01234444321  11233599999998 9


Q ss_pred             CCeEEEEEeeeCCC
Q psy2442          80 DDAVYECVAENGVG   93 (111)
Q Consensus        80 d~g~y~c~~~~~~~   93 (111)
                      |+|.|.|.+.|..+
T Consensus        82 DsG~Y~C~~~n~~~   95 (113)
T 1h5b_A           82 DSGTYFCAAEASSG   95 (113)
T ss_dssp             GCEEEEEEEECSSS
T ss_pred             hCEEEEEEEecCCC
Confidence            99999999998653

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.10  E-value=2.5e-09  Score=59.17  Aligned_cols=91  Identities=19%  Similarity=0.264  Sum_probs=59.7

Q ss_pred             CcceeeecCCcEEEEEEEeccC-----CCeEEEEECCeecc---------C-----CCCceEEEeC--CCCCeEEEEccC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP-----IPVIQWRKNGKRVS---------G-----TQSRYMVQEF--PPGGSLLRIEPV   75 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~-----~~~~~w~~~~~~~~---------~-----~~~~~~~~~~--~~~~~~l~~~~~   75 (111)
                      +..+.+..|+.+.|.|...+.+     ...+.|++.+..+.         .     ...+..+...  ......|.|.++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            3446788999999999987655     33799999753221         0     0123332210  012235999999


Q ss_pred             CCCCCCeEEEEEeeeCCCceEeeEEEEEEecCCCC
Q psy2442          76 RHARDDAVYECVAENGVGDAVSAEASLTVYEGEEK  110 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~~~  110 (111)
                      .. .|+|.|.|.+.+ .+. ....+.|.|..++..
T Consensus        88 ~~-~D~G~Y~C~~~~-~~~-~~~~~~l~V~~~~~~  119 (222)
T 3sbw_C           88 KL-QDAGVYRCMISY-GGA-DYKRITVKVNAPYNK  119 (222)
T ss_dssp             CG-GGCEEEEEEEES-SSE-EEEEEEEEEEBCCCC
T ss_pred             cc-ccCeEEEEEEEe-CCC-ceeEEEEEEECCCCC
Confidence            98 999999999998 443 356677777766543

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.10  E-value=2.5e-09  Score=66.13  Aligned_cols=90  Identities=17%  Similarity=0.297  Sum_probs=61.1

Q ss_pred             eeEEe----cCCCeeEEcCcceeeecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceE-E-EeCCCC---CeEEE
Q psy2442           3 RKVRF----LDPPEITLRPRNQAVKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYM-V-QEFPPG---GSLLR   71 (111)
Q Consensus         3 ~~l~v----~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~-~-~~~~~~---~~~l~   71 (111)
                      ++|.|    ..+|.+...+....+..|+.+.|.|.+.+.+++  .+.|+++|..+... .++. . ...++.   ...|.
T Consensus       103 ~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~-~~~~~~~~~~~~~~~~~s~L~  181 (523)
T 2rcj_C          103 TKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAG-VETTKPSKQSNNKYAASSYLS  181 (523)
T ss_pred             eEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCc-eEeccccccCCCCEEEEEEEE
Confidence            35666    345666555555566679999999999987764  89999998877532 1111 0 000100   13488


Q ss_pred             EccCCCCCCCeEEEEEeeeCCCc
Q psy2442          72 IEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        72 ~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      |..+.. .|.|.|.|.+.|..+.
T Consensus       182 i~~~~~-~d~G~Y~C~a~n~~~~  203 (523)
T 2rcj_C          182 LTPEQW-KSHRSYSCQVTHEGST  203 (523)
T ss_pred             Eechhc-CCCceEEEEEEecCcc
Confidence            889988 9999999999997764

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.10  E-value=1.5e-09  Score=57.78  Aligned_cols=80  Identities=20%  Similarity=0.249  Sum_probs=57.1

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccC-CCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      |.+...+....+..|+.+.|.|...+.+ .+.+.|++++..+....            ..+.+.++.. .|.|.|.|.+.
T Consensus         5 p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~------------~~~~~~~~~~-~d~G~Y~C~~~   71 (170)
T 3ry4_A            5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT------------QPSYRFKANN-NDSGEYTCQTG   71 (170)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCC------------SSEEEEECCG-GGCEEEEEEET
T ss_pred             CEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCc------------cceEEEeccc-ccCeEEEEEEe
Confidence            4455566666788999999999998876 56899999998875431            1144567777 99999999998


Q ss_pred             eCCCceEeeEEEEEEec
Q psy2442          90 NGVGDAVSAEASLTVYE  106 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~~~  106 (111)
                      +....   ..+.+.+..
T Consensus        72 ~~~~s---~~~~l~v~~   85 (170)
T 3ry4_A           72 QTSLS---DPVHLTVLF   85 (170)
T ss_dssp             TSBCC---CCEEEEEEC
T ss_pred             CCCce---EeEEEEEEC
Confidence            75432   334444443

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=6.1e-09  Score=53.90  Aligned_cols=99  Identities=17%  Similarity=0.254  Sum_probs=61.7

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEecc-CCCeEEEEECCee----ccCC-C---CceEEEe----CCCCCeEEEEccCCCC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKR----VSGT-Q---SRYMVQE----FPPGGSLLRIEPVRHA   78 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~----~~~~-~---~~~~~~~----~~~~~~~l~~~~~~~~   78 (111)
                      .+.+.+..+.+..|++++|.|...+. +.+.+.|++.+..    +... .   .++....    .......|.|.+++. 
T Consensus        10 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~-   88 (136)
T 2d9c_A           10 QVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITP-   88 (136)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCT-
T ss_pred             EEEecCcEEEEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCH-
Confidence            34445566789999999999998765 4568999997521    1100 0   1221110    000134599999998 


Q ss_pred             CCCeEEEEEeeeCCCc--e---EeeEEEEEEecCCCCC
Q psy2442          79 RDDAVYECVAENGVGD--A---VSAEASLTVYEGEEKP  111 (111)
Q Consensus        79 ~d~g~y~c~~~~~~~~--~---~~~~~~l~~~~~~~~p  111 (111)
                      +|+|.|.|.+.+..+.  .   ......|.|...|..|
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~g~~t~L~V~~~~s~P  126 (136)
T 2d9c_A           89 ADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPSAP  126 (136)
T ss_dssp             TTCEEEEEEEEECCSSSCEEEEECCCEEEEEECCCCCC
T ss_pred             HHCEEEEEEEEeCCCCcccceeeCCCeEEEEEeCCCCC
Confidence            9999999998875321  1   0134577777666554

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.09  E-value=2.2e-11  Score=71.66  Aligned_cols=95  Identities=19%  Similarity=0.269  Sum_probs=38.2

Q ss_pred             CCeeEEcCcce--eeecCCcEEEEEEEe----ccCCCeEEEEECCeeccCCCCceEE----EeCC-CC---CeEEEEccC
Q psy2442          10 PPEITLRPRNQ--AVKAGGITSFYCIAR----GDPIPVIQWRKNGKRVSGTQSRYMV----QEFP-PG---GSLLRIEPV   75 (111)
Q Consensus        10 ~p~~~~~~~~~--~~~~g~~~~l~c~~~----~~~~~~~~w~~~~~~~~~~~~~~~~----~~~~-~~---~~~l~~~~~   75 (111)
                      +|.+.......  .+..|+.+.|.|.+.    +.|.+.+.|++++..+.....++..    .... ..   ...|.|.++
T Consensus       224 ~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v  303 (349)
T 4dep_C          224 PPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKV  303 (349)
T ss_dssp             SCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-----
T ss_pred             CCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeec
Confidence            56554444322  677899999999998    5678899999998876541111111    0000 01   123888889


Q ss_pred             CCCCCC-eEEEEEeeeCCCceEeeEEEEEEec
Q psy2442          76 RHARDD-AVYECVAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        76 ~~~~d~-g~y~c~~~~~~~~~~~~~~~l~~~~  106 (111)
                      .. .|. |.|.|.+.|..|.. ...+.|.+..
T Consensus       304 ~~-~d~~G~Y~C~a~N~~G~~-~~~~~l~v~~  333 (349)
T 4dep_C          304 TS-EDLKRSYVCHARSAKGEV-AKAAKVKQKV  333 (349)
T ss_dssp             ---------CEEEEECSSCEE-EEECC-----
T ss_pred             cH-HHcCCcEEEEEEcCCCcE-EEEEEEeeec
Confidence            88 999 99999999999874 6666666644

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.09  E-value=1.6e-09  Score=61.87  Aligned_cols=95  Identities=20%  Similarity=0.289  Sum_probs=62.7

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccC------CCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEE
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDP------IPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLR   71 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~------~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~   71 (111)
                      +.+.+.+..+.+.+|++++|.|...+.+      .+.+.|++.  +..+.           ....++...... ....|.
T Consensus         6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~-~~~~L~   84 (264)
T 2gjj_A            6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSG-TDFTLT   84 (264)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEE
T ss_pred             cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCC-CEEEEE
Confidence            4555667778899999999999998876      568999984  22110           012455544311 334599


Q ss_pred             EccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          72 IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        72 ~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      |.++.. .|+|.|.|.+.+..+........|.|..+
T Consensus        85 I~~v~~-~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~  119 (264)
T 2gjj_A           85 IGSVKA-EDLAVYYCQQYSNYPWTFGGGTRLEIKRG  119 (264)
T ss_dssp             ESSCCG-GGCEEEEEEECSSSSCEECCCEEEEEECC
T ss_pred             ECCCCH-HHCEEEEEEEecCCccEecCCEEEEEEcC
Confidence            999998 99999999998864321122334555543

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=99.09  E-value=8.5e-10  Score=55.25  Aligned_cols=77  Identities=25%  Similarity=0.384  Sum_probs=53.3

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccC----CCeEEEEECC--ee---c-c-------CCCCceEEEeCCCCCeEEEEccC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDP----IPVIQWRKNG--KR---V-S-------GTQSRYMVQEFPPGGSLLRIEPV   75 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~--~~---~-~-------~~~~~~~~~~~~~~~~~l~~~~~   75 (111)
                      +.+.+..+.+.+|++++|.|...+.+    .+.+.|++..  ..   + .       ....|+...... ....|.|.++
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~-~~~~L~I~~v   82 (111)
T 1j05_L            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSR-TDFTLIIDPV   82 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEET-TEEEEEESSC
T ss_pred             EEEeCCEEEEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccC-CEEEEEECCC
Confidence            34556667889999999999987765    3579999852  11   1 0       112455543211 3345999999


Q ss_pred             CCCCCCeEEEEEeeeC
Q psy2442          76 RHARDDAVYECVAENG   91 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~   91 (111)
                      +. +|+|.|.|.+.+.
T Consensus        83 ~~-~DsG~Y~C~~~~~   97 (111)
T 1j05_L           83 EA-DDVATYYCQQTNE   97 (111)
T ss_dssp             CG-GGCEEEEEEECSS
T ss_pred             Cc-ccCEEEEEEEecC
Confidence            98 9999999998874

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=99.09  E-value=2.1e-09  Score=53.61  Aligned_cols=77  Identities=19%  Similarity=0.369  Sum_probs=53.6

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccC--CCeEEEEECC--ee---ccCCCCceEEEeC-CCCCeEEEEccCCCCCCCeEE
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KR---VSGTQSRYMVQEF-PPGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~---~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~d~g~y   84 (111)
                      +.+.+..+.+.+|++++|.|...+..  .+.+.|++..  ..   +.....++..... ......|.|.+++. +|+|.|
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~-~DsG~Y   81 (108)
T 2coq_A            3 VDQTPRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDLRV-EDSGTY   81 (108)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEECCCBTTEEEEEETTTTEEEEEECSCCG-GGCEEE
T ss_pred             eEeCCceEEEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEEEeCCceEEEEcCCCCEEEEEECCCCc-ccCEEE
Confidence            34556677889999999999987653  4579999852  21   1112245554321 11345599999998 999999


Q ss_pred             EEEeee
Q psy2442          85 ECVAEN   90 (111)
Q Consensus        85 ~c~~~~   90 (111)
                      .|.+.+
T Consensus        82 ~C~~~~   87 (108)
T 2coq_A           82 KCKAYR   87 (108)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999887

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.09  E-value=1.8e-09  Score=59.46  Aligned_cols=63  Identities=17%  Similarity=0.288  Sum_probs=46.6

Q ss_pred             eecCCcEEEEEEEecc----CCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          22 VKAGGITSFYCIARGD----PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        22 ~~~g~~~~l~c~~~~~----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      +..|+.++|.|.+.+.    |.+.+.|++++.....  ...      .....|.+..+.. .|.|.|.|.+.|..+
T Consensus       135 ~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~--~~~------~~~~~L~i~~~~~-~~~g~Y~C~a~n~~~  201 (214)
T 2zg1_A          135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLD--PET------TRSSELTLTPRPE-DHGTNLTCQMKRQGA  201 (214)
T ss_dssp             CCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSC--SSC------CCSSEEEECCCTT-CCSCEEEEEEECC--
T ss_pred             ccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCC--CCc------eeEEEEEEecccH-HcCcEEEEEEEeCCC
Confidence            5689999999998764    7789999998765321  111      1345588888887 888999999999754

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.09  E-value=1.4e-09  Score=61.35  Aligned_cols=79  Identities=19%  Similarity=0.267  Sum_probs=55.6

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccC-----CCeEEEEECC--eec----c-------CCCCceEEEeCCCCCeEEEEcc
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDP-----IPVIQWRKNG--KRV----S-------GTQSRYMVQEFPPGGSLLRIEP   74 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~-----~~~~~w~~~~--~~~----~-------~~~~~~~~~~~~~~~~~l~~~~   74 (111)
                      +.+.+..+.+..|++++|.|...+.+     .+.+.|++..  ..+    .       ....++...... ....|.|.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~   82 (247)
T 1svz_A            4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSG-TDFTLKISR   82 (247)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-TEEEEEESS
T ss_pred             EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCC-CEEEEEECC
Confidence            34556667889999999999998877     5789999842  111    0       012455443211 334599999


Q ss_pred             CCCCCCCeEEEEEeeeCCC
Q psy2442          75 VRHARDDAVYECVAENGVG   93 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~~~   93 (111)
                      +.. .|+|.|.|.+.|..+
T Consensus        83 v~~-~D~G~Y~C~~~n~~~  100 (247)
T 1svz_A           83 VEA-EDLGIYYCFQGSHFP  100 (247)
T ss_dssp             CCG-GGCEEEEEEECSSSS
T ss_pred             CCH-HHCEEEEEEEccCCc
Confidence            998 999999999988644

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.08  E-value=2.8e-09  Score=61.13  Aligned_cols=75  Identities=23%  Similarity=0.376  Sum_probs=52.5

Q ss_pred             cCcceeeecCCcEEEEEEEeccC--CCeEEEEECC--eec----------------cCCCCceEEEeCC-CCCeEEEEcc
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KRV----------------SGTQSRYMVQEFP-PGGSLLRIEP   74 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~----------------~~~~~~~~~~~~~-~~~~~l~~~~   74 (111)
                      .+....+..|++++|.|.+.+.+  .+.+.|++.+  ..+                .....++...... .....|.|.+
T Consensus       140 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  219 (276)
T 3auv_A          140 ESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNS  219 (276)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECC
Confidence            34556788999999999998766  4789999853  111                0112455444211 1223599999


Q ss_pred             CCCCCCCeEEEEEeeeC
Q psy2442          75 VRHARDDAVYECVAENG   91 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~   91 (111)
                      +.. .|+|.|.|.+.|.
T Consensus       220 v~~-~DsG~Y~C~a~n~  235 (276)
T 3auv_A          220 LRA-EDTAVYYCARFVF  235 (276)
T ss_dssp             CCG-GGCEEEEEEEECS
T ss_pred             CCh-hHCEEEEEEEEcC
Confidence            998 9999999999997

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.08  E-value=8.6e-10  Score=62.65  Aligned_cols=82  Identities=13%  Similarity=0.172  Sum_probs=46.3

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----C-----------CCCceEEE-eCCCCCeEEE
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----G-----------TQSRYMVQ-EFPPGGSLLR   71 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----~-----------~~~~~~~~-~~~~~~~~l~   71 (111)
                      |.+.+.+..+.+..|++++|.|...+.+.+.+.|++.  +....     .           ...++... ........|.
T Consensus         3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (259)
T 3omz_A            3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMI   82 (259)
T ss_dssp             --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEE
T ss_pred             cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEE
Confidence            4455666778899999999999998888889999983  11110     0           00111111 1111334599


Q ss_pred             EccCCCCCCCeEEEEEeeeCCC
Q psy2442          72 IEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        72 ~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      |.++.. .|+|.|.|.+.+..+
T Consensus        83 I~~v~~-~DsG~Y~C~~~~~~~  103 (259)
T 3omz_A           83 LRNLIE-NDSGVYYCATWDQNY  103 (259)
T ss_dssp             ESSCCG-GGCEEEEEEEECTTS
T ss_pred             ECCCCc-ccCEEEEEEEeeCCc
Confidence            999998 999999999988654

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=99.08  E-value=7.8e-09  Score=51.89  Aligned_cols=77  Identities=21%  Similarity=0.302  Sum_probs=53.1

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccC-----CCeEEEEECC--ee---c-c-------CCCCceEEEeCCCCCeEEEEcc
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDP-----IPVIQWRKNG--KR---V-S-------GTQSRYMVQEFPPGGSLLRIEP   74 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~-----~~~~~w~~~~--~~---~-~-------~~~~~~~~~~~~~~~~~l~~~~   74 (111)
                      +.+.+..+.+.+|++++|.|...+.+     ...+.|++..  ..   + .       ....|+...... ....|.|.+
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~-~~~~L~I~~   82 (113)
T 1dlf_L            4 MTQTPLSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSG-TDFTLKISR   82 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEECS
T ss_pred             EEEeCCEEEEcCCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEccC-CEEEEEECC
Confidence            34556667899999999999987655     3579998743  11   1 0       112455443211 334599999


Q ss_pred             CCCCCCCeEEEEEeeeC
Q psy2442          75 VRHARDDAVYECVAENG   91 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~   91 (111)
                      ++. +|+|.|.|.+.+.
T Consensus        83 v~~-~DsG~Y~C~~~~~   98 (113)
T 1dlf_L           83 VEA-EDLGVYFCSQSTH   98 (113)
T ss_dssp             CCG-GGCEEEEEEECSS
T ss_pred             CCh-HHCEEEEEEEecC
Confidence            998 9999999998764

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.08  E-value=1.1e-09  Score=63.13  Aligned_cols=80  Identities=18%  Similarity=0.312  Sum_probs=54.1

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEec-cC-CCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEcc
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARG-DP-IPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEP   74 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~-~~-~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~   74 (111)
                      ++.+...+. +.+.+|++++|.|...+ .+ .+.+.|++.  +..+.           ....++...... ....|.|.+
T Consensus       140 ~~~v~~~p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~  217 (280)
T 3fku_X          140 QPGLTQPPS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSG-NTASLTITG  217 (280)
T ss_dssp             CCSBBCCSE-EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEET-TEEEEEECS
T ss_pred             eeEEEeCCc-EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccC-CEEEEEECC
Confidence            445555555 78889999999999887 33 368999873  22111           012344443321 334599999


Q ss_pred             CCCCCCCeEEEEEeeeCC
Q psy2442          75 VRHARDDAVYECVAENGV   92 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~~   92 (111)
                      +.. .|+|.|.|.+.+..
T Consensus       218 v~~-~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          218 LQP-EDEADYYCSTWDSS  234 (280)
T ss_dssp             CCG-GGCSEEEEEEEETT
T ss_pred             CCH-HHCEEEEEEEecCC
Confidence            998 99999999998865

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.07  E-value=1.3e-09  Score=60.07  Aligned_cols=89  Identities=17%  Similarity=0.318  Sum_probs=56.1

Q ss_pred             eEEecC---CCeeEEcCcceeeecCCcEEEEEEEecc-CCC-eEEEEECCeeccCC-CCceEEEeCCCC----CeEEEEc
Q psy2442           4 KVRFLD---PPEITLRPRNQAVKAGGITSFYCIARGD-PIP-VIQWRKNGKRVSGT-QSRYMVQEFPPG----GSLLRIE   73 (111)
Q Consensus         4 ~l~v~~---~p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~-~~~~~~~~~~~~----~~~l~~~   73 (111)
                      +|.|..   +|.+...+.......|+.+.|.|.+.+. |.+ .+.|+++|..+... ............    ...|.|.
T Consensus       102 ~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~  181 (210)
T 1lk3_L          102 KLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLT  181 (210)
T ss_dssp             EEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEE
T ss_pred             EEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEC
Confidence            566654   4555543332234478999999999874 443 79999999887532 000000000001    1247888


Q ss_pred             cCCCCCCCeEEEEEeeeCCC
Q psy2442          74 PVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~   93 (111)
                      .+.. .|.|.|.|.+.|...
T Consensus       182 ~~~~-~d~G~Y~C~a~n~~~  200 (210)
T 1lk3_L          182 KADY-ESHNLYTCEVVHKTS  200 (210)
T ss_dssp             HHHH-HTCCEEEEEEECTTC
T ss_pred             hHHh-ccCCcEEEEEEecCC
Confidence            8887 899999999999764

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.07  E-value=1.4e-08  Score=57.03  Aligned_cols=76  Identities=22%  Similarity=0.380  Sum_probs=53.5

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--------------eecc--CCCCceEEEeCCCCCeEEEEccC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--------------KRVS--GTQSRYMVQEFPPGGSLLRIEPV   75 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--------------~~~~--~~~~~~~~~~~~~~~~~l~~~~~   75 (111)
                      .+...+..+.+..|+++.|.|...+ +.+.+.|++..              ....  ....++...........|.|.++
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v   82 (240)
T 3q5y_A            4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL   82 (240)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSC
T ss_pred             ccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcC
Confidence            3445666678999999999999876 66799999821              1110  11245555442223456999999


Q ss_pred             CCCCCCeEEEEEee
Q psy2442          76 RHARDDAVYECVAE   89 (111)
Q Consensus        76 ~~~~d~g~y~c~~~   89 (111)
                      +. .|+|.|.|.+.
T Consensus        83 ~~-~D~G~Y~C~~~   95 (240)
T 3q5y_A           83 EL-EDSAMYFCASS   95 (240)
T ss_dssp             CG-GGCEEEEEEEE
T ss_pred             Ch-hHCEEEEEEEc
Confidence            98 99999999997

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.07  E-value=6.4e-10  Score=62.69  Aligned_cols=90  Identities=13%  Similarity=0.134  Sum_probs=58.2

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCe-----EEEEECCeeccC----------------CCCceEEEeCCCCCeEEEEccC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPV-----IQWRKNGKRVSG----------------TQSRYMVQEFPPGGSLLRIEPV   75 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~-----~~w~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~   75 (111)
                      +..+.+..|+.+.|.|...+.+.+.     +.|++.+.....                ...++...........|.|.++
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   89 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI   89 (248)
T ss_dssp             TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred             CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence            3445788999999999998877665     999986332110                0000000000001233899999


Q ss_pred             CCCCCCeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          76 RHARDDAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .. .|+|.|.|.+.+..+.. ...+.|.|..+|
T Consensus        90 ~~-~D~G~Y~C~~~~~~~~~-~~~~~L~V~~~P  120 (248)
T 3pv7_A           90 QL-EEAGEYRCEVVVTPLKA-QGTVQLEVVASP  120 (248)
T ss_dssp             CG-GGCEEEEEEEEETTEEE-EEEEEEEEEBCC
T ss_pred             CH-HHCeEEEEEEEeCCccc-eeEEEEEEecCC
Confidence            98 99999999999876653 556677776654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.06  E-value=4.3e-09  Score=58.91  Aligned_cols=79  Identities=19%  Similarity=0.336  Sum_probs=54.1

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceec--------------cCCCCceEEEeCCCCCeEEEEccCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRV--------------SGTQSRYMVQEFPPGGSLLRIEPVR   76 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~--------------~~~~~~~~~~~~~~~~~~l~~~~~~   76 (111)
                      +.+.+..+.+..|++++|.|. .+.+.+.+.|++.  +...              .....++...........|.|.++.
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~   81 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT   81 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence            345566778999999999999 7778889999985  2111              0112455544312133459999999


Q ss_pred             CCCCCeEEEEEeeeCCC
Q psy2442          77 HARDDAVYECVAENGVG   93 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~   93 (111)
                      . .|+|.|.|.+.|..+
T Consensus        82 ~-~DsG~Y~C~~~~~~g   97 (238)
T 2p1y_A           82 P-SQTSVYFCASGDLGQ   97 (238)
T ss_dssp             G-GGCEEEEEEEEC---
T ss_pred             c-ccCeeEEEEEEeCCC
Confidence            8 999999999998643

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=99.06  E-value=3.5e-09  Score=53.24  Aligned_cols=77  Identities=18%  Similarity=0.325  Sum_probs=54.0

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccC--CCeEEEEECC--eec---cCCCCceEEEeC-CCCCeEEEEccCCCCCCCeEE
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KRV---SGTQSRYMVQEF-PPGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~---~~~~~~~~~~~~-~~~~~~l~~~~~~~~~d~g~y   84 (111)
                      +.+.+..+.+.+|++++|.|...+.+  .+.+.|++..  ...   .....|+..... ......|.|.+++. +|+|.|
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~-~DsG~Y   81 (113)
T 1sq2_N            3 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTV-EDGGTY   81 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCG-GGCEEE
T ss_pred             eEeCCccEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEeEEeCCCEEEEEeCCCCEEEEEECCCCh-hhCEEE
Confidence            34556677889999999999987655  4589999852  221   112245554321 11334599999998 999999


Q ss_pred             EEEeee
Q psy2442          85 ECVAEN   90 (111)
Q Consensus        85 ~c~~~~   90 (111)
                      .|.+.+
T Consensus        82 ~C~~~~   87 (113)
T 1sq2_N           82 RCGLGV   87 (113)
T ss_dssp             EEEECB
T ss_pred             EEEEEe
Confidence            999887

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.06  E-value=6.2e-10  Score=69.61  Aligned_cols=88  Identities=23%  Similarity=0.359  Sum_probs=63.9

Q ss_pred             ceeeecCCcEEEEEEE-eccCCCeEEEEECCeeccCC-----------CCceEEEeCCCCCeEEEEccCCCCCCCeEEEE
Q psy2442          19 NQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGT-----------QSRYMVQEFPPGGSLLRIEPVRHARDDAVYEC   86 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c   86 (111)
                      .+.+..|++++|.|.. .+.+.+.+.|++++......           ..+....    ....|.|.+++. .|+|.|.|
T Consensus       375 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~~L~i~~v~~-~D~G~Y~C  449 (581)
T 3o3u_N          375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVL----PNGSLFLPAVGI-QDEGIFRC  449 (581)
T ss_dssp             EEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEEC----TTSCEEESSCCG-GGCEEEEE
T ss_pred             ccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEc----CCceEEEecccc-ccCeEEEE
Confidence            3567899999999998 77888899999976522100           1233332    223499999998 99999999


Q ss_pred             EeeeCCCceEeeEEEEEEecCCCCC
Q psy2442          87 VAENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        87 ~~~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      .+.|..+......+.|.|..+|..|
T Consensus       450 ~~~n~~~~~~~~~~~l~V~~~~~~p  474 (581)
T 3o3u_N          450 QAMNRNGKETKSNYRVRVYQIPGKP  474 (581)
T ss_dssp             EEECTTSCEEEEEEEEEEEBCCCCC
T ss_pred             EEEcCCCceeEEEEEEEEEcCCCCC
Confidence            9999887643667788887766544

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.06  E-value=5.1e-10  Score=62.24  Aligned_cols=89  Identities=21%  Similarity=0.327  Sum_probs=62.1

Q ss_pred             cCcceeeecCCcEEEEEEEeccCC-CeEEEEECCeecc---------CC---CCceE----------EEeCCCCCeEEEE
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDPI-PVIQWRKNGKRVS---------GT---QSRYM----------VQEFPPGGSLLRI   72 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~~~---------~~---~~~~~----------~~~~~~~~~~l~~   72 (111)
                      .+..+.+..|+.+.|.|...+.+. +.+.|++.+....         ..   ..++.          ..    ....|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~----~~~~L~i   81 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLD----SQGRLVL   81 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEEC----TTCCEEE
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccC----CCceEEE
Confidence            345567889999999999988875 7899997543311         00   01111          11    2223999


Q ss_pred             ccCCCCCCCeEEEEEeeeCC-CceEeeEEEEEEecCCCC
Q psy2442          73 EPVRHARDDAVYECVAENGV-GDAVSAEASLTVYEGEEK  110 (111)
Q Consensus        73 ~~~~~~~d~g~y~c~~~~~~-~~~~~~~~~l~~~~~~~~  110 (111)
                      .++.. .|.|.|.|.+.+.. +. ....+.|.|..+|..
T Consensus        82 ~~v~~-~D~G~Y~C~~~~~~~~~-~~~~~~l~V~~~p~~  118 (231)
T 2pet_A           82 AEAQV-GDERDYVCVVRAGAAGT-AEATARLNVFAKPEA  118 (231)
T ss_dssp             SSCCG-GGCEEEEEEEECGGGCE-EEEEEEEEEEBCCCC
T ss_pred             cccCc-ccCceEEEEEEecCCCc-eEEEEEEEEEecCCC
Confidence            99998 99999999999876 54 467778888777654

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.06  E-value=4.1e-10  Score=62.02  Aligned_cols=91  Identities=15%  Similarity=0.300  Sum_probs=58.0

Q ss_pred             eeEEec----CCCeeEEcCcceeeecCCcEEEEEEEeccC--CCeEEEEECCeeccCCCCceEEEeCCCC----CeEEEE
Q psy2442           3 RKVRFL----DPPEITLRPRNQAVKAGGITSFYCIARGDP--IPVIQWRKNGKRVSGTQSRYMVQEFPPG----GSLLRI   72 (111)
Q Consensus         3 ~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~----~~~l~~   72 (111)
                      +.|.|.    .+|.+...+.......|+.+.|.|.+.+.+  .+.+.|+++|..+.............+.    ...|.+
T Consensus       100 ~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i  179 (211)
T 3tv3_L          100 TKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSL  179 (211)
T ss_dssp             EEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEE
T ss_pred             ceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEE
Confidence            356666    466665554444445799999999998853  4689999999887531000000000001    133777


Q ss_pred             ccCCCCCCCeEEEEEeeeCCCc
Q psy2442          73 EPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        73 ~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      ..... .|.|.|.|.+.|..+.
T Consensus       180 ~~~~~-~d~g~Y~C~v~~~~~~  200 (211)
T 3tv3_L          180 TPEQW-KSHRSYSCQVTHEGST  200 (211)
T ss_dssp             CHHHH-HHSSCEEEEEEETTEE
T ss_pred             cHHHh-CCCCeEEEEEEECCCC
Confidence            77766 7899999999998754

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.05  E-value=2.3e-09  Score=64.76  Aligned_cols=91  Identities=25%  Similarity=0.342  Sum_probs=60.4

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCC----CeEEEEECC--eec-----------cCCCCceEEEeCCCCCeEEEEccC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPI----PVIQWRKNG--KRV-----------SGTQSRYMVQEFPPGGSLLRIEPV   75 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~----~~~~w~~~~--~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~   75 (111)
                      +...+..+.+..|+.+.|.|.+.+.+.    +.+.|++++  ..+           .....++...... ....|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v   82 (438)
T 1qgc_4            4 LTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSR-TDFTLTIDPV   82 (438)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEET-TEEEEEESSC
T ss_pred             eEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccC-CcEEEEeCCC
Confidence            345566678899999999999888775    379999853  211           0112455443311 3345999999


Q ss_pred             CCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          76 RHARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      .. .|+|.|.|.+.|..+........+.+.
T Consensus        83 ~~-~D~G~Y~C~a~n~~~~~~~~~~~l~V~  111 (438)
T 1qgc_4           83 EA-DDVATYYCQQSNEVPLTFGAGTKLDLK  111 (438)
T ss_dssp             CG-GGCEEEEEEECSSTTCCBCCCEEEEEC
T ss_pred             cC-cCCeeEEEEEecCCCccccCceeEEec
Confidence            98 999999999998765322233444443

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=99.05  E-value=5.3e-09  Score=52.16  Aligned_cols=74  Identities=19%  Similarity=0.379  Sum_probs=51.3

Q ss_pred             CcceeeecCCcEEEEEE-EeccC-CCeEEEEECCeecc-----------CCCCceEEEe-CCCCCeEEEEccCCCCCCCe
Q psy2442          17 PRNQAVKAGGITSFYCI-ARGDP-IPVIQWRKNGKRVS-----------GTQSRYMVQE-FPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~-~~~~~-~~~~~w~~~~~~~~-----------~~~~~~~~~~-~~~~~~~l~~~~~~~~~d~g   82 (111)
                      +..+.+.+|++++|.|. ..+.+ ...+.|++....+.           ....|+.... .......|.|.+++. +|+|
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~-~DsG   85 (109)
T 1pew_A            7 PHSVSESPGKTVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKT-EDEA   85 (109)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCG-GGCE
T ss_pred             CCCEEEcCCCCEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCCh-hhCE
Confidence            55678899999999999 76554 46899998762210           0124555442 222334599999998 9999


Q ss_pred             EEEEEeeeC
Q psy2442          83 VYECVAENG   91 (111)
Q Consensus        83 ~y~c~~~~~   91 (111)
                      .|.|.+.+.
T Consensus        86 ~Y~C~~~~~   94 (109)
T 1pew_A           86 DYYCQSYDA   94 (109)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEEEeC
Confidence            999998874

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.05  E-value=5.6e-09  Score=60.39  Aligned_cols=72  Identities=15%  Similarity=0.201  Sum_probs=56.2

Q ss_pred             ceeeecCCcEEEEEEEe-ccCCCeEEEEECCeeccCCCCceEEEeC-CCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          19 NQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEF-PPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ...+..|+.+.|.|.+. +.|.+.+.|++++..+... .++.+... ......|.+.++.. .|.|.|.|.+.+..
T Consensus       116 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~-~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~~~~  189 (312)
T 2y23_A          116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG-PKYKMHIDRNTGIIEMFMEKLQD-EDEGTYTFQLQDGK  189 (312)
T ss_dssp             EEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSS-SSCEEEEETTTTEEEEEESCCCG-GGCEEEEEEEESSS
T ss_pred             ceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeC-CcEEEEEccCCCEEEEEEccCCc-ccCEeEEEEEEeCC
Confidence            56788999999999998 7888999999999988654 44444322 12334489999998 99999999987644

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.05  E-value=1.4e-09  Score=59.08  Aligned_cols=88  Identities=19%  Similarity=0.268  Sum_probs=60.3

Q ss_pred             cceeeecCCcEEEEEEEec--cCCCeEEEEE--CCeecc---------CCCCceEEEeCCCCCeEEEEccCCCCCCCeEE
Q psy2442          18 RNQAVKAGGITSFYCIARG--DPIPVIQWRK--NGKRVS---------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~--~~~~~~~w~~--~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y   84 (111)
                      ..+....|+++.|.|....  .+.+.+.|++  ++..+.         ....|+.+.    ....|.|.++.. .|+|.|
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~----~ngsL~I~~v~~-~DsG~Y   81 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF----KNGTLKIKHLKT-DDQDIY   81 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC----TTSCEEECSCCG-GGCEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC----CCCCEEECCCCh-hhCEEE
Confidence            3456778999999995432  3456899999  776551         122455544    223599999998 999999


Q ss_pred             EEEeeeCCCceE-eeEEEEEEecCCCC
Q psy2442          85 ECVAENGVGDAV-SAEASLTVYEGEEK  110 (111)
Q Consensus        85 ~c~~~~~~~~~~-~~~~~l~~~~~~~~  110 (111)
                      .|.+.|..|... ...+.|.|.++...
T Consensus        82 ~c~~~n~~g~~~~~~~~~L~V~~~~~~  108 (182)
T 1hnf_A           82 KVSIYDTKGKNVLEKIFDLKIQERVSK  108 (182)
T ss_dssp             EEEEEETTSCEEEEEEEEEEEECCCCC
T ss_pred             EEEEEeCCCceeEEEEEEEEEcCcCCC
Confidence            999999877532 24566777665433

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.05  E-value=6.1e-09  Score=57.34  Aligned_cols=94  Identities=20%  Similarity=0.181  Sum_probs=60.9

Q ss_pred             EcCcceeeecCCcEEEEEEEecc-------CCCeEEEEECCeec----------------cCCCCceEEEeCC-CCCeEE
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGD-------PIPVIQWRKNGKRV----------------SGTQSRYMVQEFP-PGGSLL   70 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~-------~~~~~~w~~~~~~~----------------~~~~~~~~~~~~~-~~~~~l   70 (111)
                      ..+..+.+..|+.++|.|...+.       +.+.+.|++.+...                .....++...... .....|
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL   84 (214)
T 2zg1_A            5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSL   84 (214)
T ss_dssp             ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCE
T ss_pred             eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEE
Confidence            34556788899999999998754       45689999976521                0112344443210 022349


Q ss_pred             EEccCCCCCCCeEEEEEeeeCCCceE---eeEEEEEEecCCC
Q psy2442          71 RIEPVRHARDDAVYECVAENGVGDAV---SAEASLTVYEGEE  109 (111)
Q Consensus        71 ~~~~~~~~~d~g~y~c~~~~~~~~~~---~~~~~l~~~~~~~  109 (111)
                      .|.++.. .|+|.|.|.+.+..+...   ...+.|.|...+.
T Consensus        85 ~I~~v~~-~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~  125 (214)
T 2zg1_A           85 SIGDARM-EDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIE  125 (214)
T ss_dssp             EECSCCG-GGCEEEEEEEEETTTEEEECCSSCEEEEEECCCC
T ss_pred             EEccCCH-hhCceEEEEEEcCCCceeeecCCceEEEEecCCC
Confidence            9999998 999999999988653211   1355666665543

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.05  E-value=4.4e-10  Score=61.06  Aligned_cols=60  Identities=15%  Similarity=0.311  Sum_probs=48.2

Q ss_pred             eecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          22 VKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        22 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      +..|+++.|.|.+   |.|.+.|+++|..+.....         ....|.|..+.. .|+|.|.|.+.|..|.
T Consensus       119 ~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~---------~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~  178 (186)
T 1jbj_A          119 SRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA---------TKNTWNLGNNAK-DPRGTYQCQGAKETSN  178 (186)
T ss_dssp             CSSSCEEEEECSS---SCSCEEEEETTEECCCSSC---------CSSCCEEEETTS-CCEEEEEEEESSCEEE
T ss_pred             cCCCCeEEEEeeC---CCCeEEEEECCEECcccCC---------CcceEEECCCCc-CcCEEEEEEEEcCcCC
Confidence            3489999999988   7789999999998753211         233488899998 9999999999998764

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.04  E-value=1.9e-09  Score=61.56  Aligned_cols=83  Identities=20%  Similarity=0.261  Sum_probs=58.3

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccC-----CCeEEEEECC--eec---c--------CCCCceEEEeCCCCCeEE
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDP-----IPVIQWRKNG--KRV---S--------GTQSRYMVQEFPPGGSLL   70 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~-----~~~~~w~~~~--~~~---~--------~~~~~~~~~~~~~~~~~l   70 (111)
                      ..+.+.+.+..+.+.+|++++|.|...+.+     .+.+.|++..  ..+   .        ....++...... ....|
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~-~~~~L   92 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSG-TDFTL   92 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEE
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCC-CEEEE
Confidence            345566667777889999999999988776     4689999752  211   0        012455544211 33459


Q ss_pred             EEccCCCCCCCeEEEEEeeeCCC
Q psy2442          71 RIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        71 ~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      .|.++.. .|+|.|.|.+.|..+
T Consensus        93 ~I~~v~~-~DsG~Y~C~~~~~~~  114 (268)
T 1x9q_A           93 KINRVEA-EDLGVYFCSQSTHVP  114 (268)
T ss_dssp             EESSCCG-GGCEEEEEEECSSSS
T ss_pred             EECCCCh-hHCEEEEEEEecCCC
Confidence            9999998 999999999988643

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.04  E-value=3.3e-09  Score=58.25  Aligned_cols=75  Identities=15%  Similarity=0.136  Sum_probs=55.0

Q ss_pred             cCCcEEEEEEEecc-CCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEE
Q psy2442          24 AGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL  102 (111)
Q Consensus        24 ~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l  102 (111)
                      .++.+.|.|.+.+. |.+.+.|++++..+... .++...... ....|.|.++.. .|.|.|.|.+.|..+.. ...+.+
T Consensus        16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~-~~~~~~~~~-~~~~L~i~~v~~-~D~G~Y~C~~~n~~~~~-~~~~~l   91 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS-DRVKTGVTG-EQIWLQINEPTP-NDKGKYVMELFDGKTGH-QKTVDL   91 (212)
T ss_dssp             CSSEEEEEEEBSSCCSSCEEEEEETTEECCCC-SSEEEEEET-TEEEEEEESCCG-GGCEEEEEEEECSSCEE-EEEEEE
T ss_pred             cCceEEEEEEEeccCCCceEEEEECCEEccCC-CeEEEEEeC-CEEEEEECCCCc-ccCEEEEEEEecCCcce-EEEEEE
Confidence            56778888988774 47799999999988654 455444322 334589999998 99999999999977653 444444

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=99.04  E-value=2.5e-09  Score=53.43  Aligned_cols=74  Identities=18%  Similarity=0.246  Sum_probs=50.5

Q ss_pred             cceeeecCCcEEEEEEEeccC-CCeEEEEECCee--cc------C----CCCceEEEeC-CCCCeEEEEccCCCCCCCeE
Q psy2442          18 RNQAVKAGGITSFYCIARGDP-IPVIQWRKNGKR--VS------G----TQSRYMVQEF-PPGGSLLRIEPVRHARDDAV   83 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~--~~------~----~~~~~~~~~~-~~~~~~l~~~~~~~~~d~g~   83 (111)
                      ..+.+.+|++++|.|...... ...+.|++....  ..      .    ...|+..... ......|.|.++.. +|+|.
T Consensus         4 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~-~DsG~   82 (110)
T 2q87_A            4 RTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTE-EDAGT   82 (110)
T ss_dssp             EEEEECTTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCG-GGCEE
T ss_pred             cEEEEeCCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCH-HHCEE
Confidence            446788999999999986644 358999986421  10      0    1134444321 11234599999998 99999


Q ss_pred             EEEEeeeCC
Q psy2442          84 YECVAENGV   92 (111)
Q Consensus        84 y~c~~~~~~   92 (111)
                      |.|.+.+..
T Consensus        83 Y~C~~~~~~   91 (110)
T 2q87_A           83 YWCGVDTPW   91 (110)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEecCc
Confidence            999998875

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.04  E-value=1.8e-09  Score=69.33  Aligned_cols=98  Identities=22%  Similarity=0.286  Sum_probs=67.8

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEE-EE--ECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQ-WR--KNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~-w~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      .+|.+. .+..+.+..|+.+.|.|.+.+.|.+.+. |+  +++..+...  .............|.|.++.. .|.|.|.
T Consensus       164 ~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~--~~~~~~~~~~~~~l~I~~~~~-~d~g~Y~  239 (731)
T 2v5y_A          164 RTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK--EIKVTSSRRFIASFNVVNTTK-RDAGKYR  239 (731)
T ss_dssp             SSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEE--EEEECCSSEEEEEEEECSCCT-TTCEEEE
T ss_pred             cccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCcccccc--ceEEeccccceEEEEEccccc-ccCeEEE
Confidence            456655 4556788899999999999999998877 77  455554321  111111000124599999998 9999999


Q ss_pred             EEeeeCCCceEeeEEEEEEecCCCC
Q psy2442          86 CVAENGVGDAVSAEASLTVYEGEEK  110 (111)
Q Consensus        86 c~~~~~~~~~~~~~~~l~~~~~~~~  110 (111)
                      |.+.|..|...+....+.+..+|.+
T Consensus       240 c~A~n~~G~~~s~~~~l~V~~~P~~  264 (731)
T 2v5y_A          240 CMIRTEGGVGISNYAELVVKEPPVP  264 (731)
T ss_dssp             EEEEETTEEEECCCEEEEEECCCCB
T ss_pred             EEEECCCCCcceeeEEEEEecCCCC
Confidence            9999998863355666777766654

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=99.04  E-value=5.7e-09  Score=53.77  Aligned_cols=89  Identities=22%  Similarity=0.242  Sum_probs=57.0

Q ss_pred             EcCcceeeecCCcEEEEEEEec---cCCCeEEEEECCeec-----cC----------------------C--CCceEEEe
Q psy2442          15 LRPRNQAVKAGGITSFYCIARG---DPIPVIQWRKNGKRV-----SG----------------------T--QSRYMVQE   62 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~---~~~~~~~w~~~~~~~-----~~----------------------~--~~~~~~~~   62 (111)
                      ..+..+.+..|++++|.|....   .+.+.+.|++.+...     ..                      .  ..|+.+..
T Consensus         9 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~   88 (135)
T 1xt5_A            9 TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN   88 (135)
T ss_dssp             CSCSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESC
T ss_pred             CCCceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEec
Confidence            3445567889999999999753   456689999864321     00                      0  02333221


Q ss_pred             CCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc----eEeeEEEEEEec
Q psy2442          63 FPPGGSLLRIEPVRHARDDAVYECVAENGVGD----AVSAEASLTVYE  106 (111)
Q Consensus        63 ~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~----~~~~~~~l~~~~  106 (111)
                       . ....|.|.++.. .|+|.|.|.+.+....    .....+.|.|.+
T Consensus        89 -~-~~~sL~I~~v~~-~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V~g  133 (135)
T 1xt5_A           89 -L-AAPTLRLTHVHP-QDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG  133 (135)
T ss_dssp             -T-TSCCEEECSCCG-GGCEEEEEEEECSSCCSGGGEEEEEEEEEEET
T ss_pred             -C-CCCeEEECCCCh-hhCcEEEEEEEcCCccccccccceeEEEEEec
Confidence             1 224499999998 9999999999885321    123556666654

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.04  E-value=7.5e-10  Score=65.61  Aligned_cols=75  Identities=15%  Similarity=0.221  Sum_probs=56.4

Q ss_pred             eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeE
Q psy2442          20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAE   99 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~   99 (111)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++....       .     ....|.|.++.. .|.|.|.|.+.|..+. ....
T Consensus       106 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~-------~-----~~~~L~i~~v~~-~d~G~Y~C~a~~~~~~-~~~~  171 (363)
T 1wio_A          106 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------Q-----GGKTLSVSQLEL-QDSGTWTCTVLQNQKK-VEFK  171 (363)
T ss_dssp             SSEESBSCEEEEEECCTTCCCCEEEECSSSCEE-------E-----ESSEEEECSBCG-GGCEECEEEEEETTEE-EEEC
T ss_pred             eEEecCCCEEEEEEcCCCCCCeEEEEcCCCccc-------c-----cceEEEEeeCCh-hcCCEEEEEEecCCCe-EEEE
Confidence            367899999999999888888999998764321       1     234488999998 9999999999987544 2445


Q ss_pred             EEEEEecCC
Q psy2442         100 ASLTVYEGE  108 (111)
Q Consensus       100 ~~l~~~~~~  108 (111)
                      +.+.+...|
T Consensus       172 ~~l~v~~~p  180 (363)
T 1wio_A          172 IDIVVLAFQ  180 (363)
T ss_dssp             CEECEECCS
T ss_pred             EEEEEecCC
Confidence            555555444

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.04  E-value=4.6e-09  Score=58.03  Aligned_cols=75  Identities=17%  Similarity=0.258  Sum_probs=51.5

Q ss_pred             CcceeeecCCcEEEEEEE-eccC-CCeEEEEECCe--ec-----------cCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442          17 PRNQAVKAGGITSFYCIA-RGDP-IPVIQWRKNGK--RV-----------SGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~-~~~~-~~~~~w~~~~~--~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      +..+.+..|+.++|.|.+ .+.+ .+.+.|++.+.  .+           .....++...... ....|.|.++.. .|+
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~-~D~   84 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSG-TSATLGITGLQT-GDE   84 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET-TEEEEEECSCCG-GGC
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccC-CEEEEEECCCCc-ccC
Confidence            455678899999999995 4432 46899998431  11           0112355443211 334599999998 999


Q ss_pred             eEEEEEeeeCCC
Q psy2442          82 AVYECVAENGVG   93 (111)
Q Consensus        82 g~y~c~~~~~~~   93 (111)
                      |.|.|.+.|..+
T Consensus        85 G~Y~C~~~~~~~   96 (216)
T 2xzc_L           85 ADYYCGTWDSSL   96 (216)
T ss_dssp             EEEEEEEECTTS
T ss_pred             EEEEEEEEeCCC
Confidence            999999998765

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=99.03  E-value=1.1e-08  Score=52.13  Aligned_cols=90  Identities=21%  Similarity=0.313  Sum_probs=56.4

Q ss_pred             EcCcceeeecCCcEEEEEEEeccCCC---eEEEEECCeeccC--------C---------CCceEEEeCC--CCCeEEEE
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDPIP---VIQWRKNGKRVSG--------T---------QSRYMVQEFP--PGGSLLRI   72 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~~--------~---------~~~~~~~~~~--~~~~~l~~   72 (111)
                      ..+..+.+..|++++|.|...+.+..   .+.|++.......        .         ..|+.+....  .....|.|
T Consensus         5 ~~p~~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   84 (123)
T 4gjt_B            5 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL   84 (123)
T ss_dssp             ECCSEEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEE
T ss_pred             EcCCEEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEE
Confidence            34555788899999999998765543   4789985432110        0         1222222111  12234999


Q ss_pred             ccCCCCCCCeEEEEEeee-CCCceEeeEEEEEEec
Q psy2442          73 EPVRHARDDAVYECVAEN-GVGDAVSAEASLTVYE  106 (111)
Q Consensus        73 ~~~~~~~d~g~y~c~~~~-~~~~~~~~~~~l~~~~  106 (111)
                      .+++. .|+|.|.|.+.+ ..|. ....+.|.|.+
T Consensus        85 ~~v~~-~DsG~Y~C~v~t~~~g~-~~~~~~L~VlE  117 (123)
T 4gjt_B           85 RNAVQ-ADEGEYECRVSTFPAGS-FQARLRLRVLE  117 (123)
T ss_dssp             ESCCS-SSCSEEEEEEEESSSCE-EEEEEEEEC--
T ss_pred             CCCCh-HHCEEEEEEEEECCCCe-EEeEEEEEEEE
Confidence            99998 999999999876 4454 46677777765

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.03  E-value=1.1e-08  Score=55.92  Aligned_cols=64  Identities=19%  Similarity=0.280  Sum_probs=43.7

Q ss_pred             ecCC-cEEEEEEEecc-CCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeEE
Q psy2442          23 KAGG-ITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEA  100 (111)
Q Consensus        23 ~~g~-~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~  100 (111)
                      ..|. .++|.|.+.+. +.+.+.|++++..+..             ...|.+.......|.|.|.|.+.|..|.. +..+
T Consensus       121 ~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~-------------~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~-s~~~  186 (193)
T 2if7_A          121 QNMTCELHLTCSVEDADDNVSFRWEALGNTLSS-------------QPNLTVSWDPRISSEQDYTCIAENAVSNL-SFSV  186 (193)
T ss_dssp             -CSSEEEEEEEEEESCCTTCEEEEEETTEEEES-------------SSEEEEEECTTTCSCCEEEEEEEETTEEE-EEEE
T ss_pred             cCCCceEEEEEEEecCCCceEEEEEeCCEEcCC-------------CCeEEEEeccCcCCCCcEEEEEECCCCcc-cccc
Confidence            3455 89999999885 4779999998876532             11244433332138999999999998764 4443

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.03  E-value=1.6e-10  Score=64.53  Aligned_cols=82  Identities=20%  Similarity=0.321  Sum_probs=43.6

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCe--ec-----------cCCCCceEEEeCCCCCeEEEEccCC
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK--RV-----------SGTQSRYMVQEFPPGGSLLRIEPVR   76 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~   76 (111)
                      .+.+...+..+.+..|++++|.|...+.+.+.+.|++.+.  .+           .....++.... ......|.|.++.
T Consensus        23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~  101 (233)
T 3bqu_C           23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG-YGTDFVFTIENML  101 (233)
T ss_dssp             CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE-EEEEEEEC-----
T ss_pred             ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec-cCCEEEEEECCCC
Confidence            3445555677788999999999999888777899987431  11           00012222111 0012258889999


Q ss_pred             CCCCCeEEEEEeeeCCC
Q psy2442          77 HARDDAVYECVAENGVG   93 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~   93 (111)
                      . .|+|.|.|.+.|..+
T Consensus       102 ~-~D~G~Y~C~~~~~~~  117 (233)
T 3bqu_C          102 S-EDVADYYCLQSDNLP  117 (233)
T ss_dssp             C-CCCSEEEEEECSSSS
T ss_pred             H-HHCEEEEEEEecCCc
Confidence            8 999999999987653

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=99.02  E-value=6.9e-09  Score=53.15  Aligned_cols=77  Identities=17%  Similarity=0.238  Sum_probs=51.1

Q ss_pred             EEcCcceeeecCCcEEEEEEEecc-CCCeEEEEECCee----ccCC----CCceEEEe----CCCCCeEEEEccCCCCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKR----VSGT----QSRYMVQE----FPPGGSLLRIEPVRHARD   80 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~----~~~~----~~~~~~~~----~~~~~~~l~~~~~~~~~d   80 (111)
                      .+.+..+.+..|++++|.|...+. +.+.+.|++.+..    +...    ..++....    .......|.|.+++. +|
T Consensus         7 ~q~p~~~~v~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~-~D   85 (127)
T 2jju_A            7 IQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITP-AD   85 (127)
T ss_dssp             ECCCSEEEEETTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCG-GG
T ss_pred             EeeCCeEEEeCCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCH-HH
Confidence            344556788999999999998765 4568999987521    1100    01332210    001234599999998 99


Q ss_pred             CeEEEEEeeeC
Q psy2442          81 DAVYECVAENG   91 (111)
Q Consensus        81 ~g~y~c~~~~~   91 (111)
                      +|.|.|.+.+.
T Consensus        86 sG~Y~C~~~~~   96 (127)
T 2jju_A           86 AGTYYCVKFRK   96 (127)
T ss_dssp             CEEEEEEEEEC
T ss_pred             CEEEEEEEEcC
Confidence            99999998875

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=99.02  E-value=6.7e-09  Score=52.69  Aligned_cols=90  Identities=17%  Similarity=0.244  Sum_probs=56.9

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccC---CCeEEEEECC--ee---cc--------CCCCceEEEeCCCCCeEEEEccCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDP---IPVIQWRKNG--KR---VS--------GTQSRYMVQEFPPGGSLLRIEPVRH   77 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~--~~---~~--------~~~~~~~~~~~~~~~~~l~~~~~~~   77 (111)
                      .+++. +.+.+|++++|.|...+.+   ...+.|++..  ..   +.        ....|+...... ....|.|.+++.
T Consensus         5 ~q~~~-~~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~-~~~~L~I~~~~~   82 (120)
T 1oaq_L            5 TQESA-LTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIG-NKAALTITGAQT   82 (120)
T ss_dssp             EECSE-EEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEET-TEEEEEEESCCG
T ss_pred             EcCCc-EEEcCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecCC-CeEEEEECCCCh
Confidence            34443 7889999999999987764   4579998742  11   10        012455544322 334599999998


Q ss_pred             CCCCeEEEEEeeeCCCceEeeEEEEEEec
Q psy2442          78 ARDDAVYECVAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        78 ~~d~g~y~c~~~~~~~~~~~~~~~l~~~~  106 (111)
                       +|+|.|.|.+.+...........|.|..
T Consensus        83 -~DsG~Y~C~~~~~~~~~fg~gt~L~V~~  110 (120)
T 1oaq_L           83 -EDEAIYFCALWYSNHLVFGGGTKLTVLG  110 (120)
T ss_dssp             -GGCEEEEEEEEETTEEEECCCEEEEECC
T ss_pred             -hhCeEEEEEEccCCCcEECCCEEEEEcC
Confidence             9999999998875321112233555544

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=99.02  E-value=7.4e-09  Score=52.55  Aligned_cols=93  Identities=14%  Similarity=0.154  Sum_probs=56.1

Q ss_pred             cCcceeeecCCcEEEEEEEecc----CCCeEEEEECCee------cc-------------CCCCceEEEeC-CCCCeEEE
Q psy2442          16 RPRNQAVKAGGITSFYCIARGD----PIPVIQWRKNGKR------VS-------------GTQSRYMVQEF-PPGGSLLR   71 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~----~~~~~~w~~~~~~------~~-------------~~~~~~~~~~~-~~~~~~l~   71 (111)
                      .+..+.+..|++++|.|.....    ....+.|++.+..      +.             ....|+.+... ......|.
T Consensus         5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (124)
T 1neu_A            5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV   84 (124)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred             cCCeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEE
Confidence            3455678899999999997543    3558999875320      00             00134333211 01223499


Q ss_pred             EccCCCCCCCeEEEEEeeeCCCc-eEeeEEEEEEecCCC
Q psy2442          72 IEPVRHARDDAVYECVAENGVGD-AVSAEASLTVYEGEE  109 (111)
Q Consensus        72 ~~~~~~~~d~g~y~c~~~~~~~~-~~~~~~~l~~~~~~~  109 (111)
                      |.+++. .|+|.|.|.+.+..+. .....+.|.|...|.
T Consensus        85 I~~v~~-~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~p~  122 (124)
T 1neu_A           85 IHNLDY-SDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVP  122 (124)
T ss_dssp             ECSCCG-GGCEEEEEEEEC----CCEEEEEEEEEEC---
T ss_pred             EccCCh-hhCEEEEEEEEcCCCCcCcEeeEEEEEecCCC
Confidence            999998 9999999999986553 135567777776553

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=99.02  E-value=5e-09  Score=53.94  Aligned_cols=97  Identities=20%  Similarity=0.195  Sum_probs=59.7

Q ss_pred             EEcCcceeeecCCcEEEEEEEec-------cCCCeEEEEECCee------ccC----------CCCceEEEeCC-CCCeE
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARG-------DPIPVIQWRKNGKR------VSG----------TQSRYMVQEFP-PGGSL   69 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~-------~~~~~~~w~~~~~~------~~~----------~~~~~~~~~~~-~~~~~   69 (111)
                      ...+..+.+..|++++|.|....       .....+.|++....      +..          ...|+.+.... .....
T Consensus        10 ~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   89 (132)
T 1nko_A           10 LTMQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCT   89 (132)
T ss_dssp             EEECSEEEEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGGGTBCC
T ss_pred             EeCCCEEEEcCCCeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCCCCceE
Confidence            34566678999999999999863       34568999986432      110          01355543211 12235


Q ss_pred             EEEccCCCCCCCeEEEEEeeeCCCc-eE-eeEEEEEEecCCCCC
Q psy2442          70 LRIEPVRHARDDAVYECVAENGVGD-AV-SAEASLTVYEGEEKP  111 (111)
Q Consensus        70 l~~~~~~~~~d~g~y~c~~~~~~~~-~~-~~~~~l~~~~~~~~p  111 (111)
                      |.|.+++. +|+|.|.|.+.+.... .. ...+.|.|...+..|
T Consensus        90 L~I~~v~~-~DsG~Y~C~v~~~~~~~~~~~~~~~l~V~~~~~~p  132 (132)
T 1nko_A           90 LSIRDARM-SDAGRYFFRMEKGNIKWNYKYDQLSVNVTALTHRP  132 (132)
T ss_dssp             EEECSCCG-GGCEEEEEEEEETTEEEECTTSCEEEEEECCC---
T ss_pred             EEEcccCc-ccCeeEEEEEEcCCCcccccCCceEEEecccCCCc
Confidence            99999998 9999999998874311 00 235677777777665

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.02  E-value=9.6e-09  Score=59.96  Aligned_cols=96  Identities=18%  Similarity=0.263  Sum_probs=63.9

Q ss_pred             eeEEecCCCeeEE--cCcceeeecC---CcEEEEEE-EeccCCCeEEEEECCeecc------CCCCceEEEeCCCCCeEE
Q psy2442           3 RKVRFLDPPEITL--RPRNQAVKAG---GITSFYCI-ARGDPIPVIQWRKNGKRVS------GTQSRYMVQEFPPGGSLL   70 (111)
Q Consensus         3 ~~l~v~~~p~~~~--~~~~~~~~~g---~~~~l~c~-~~~~~~~~~~w~~~~~~~~------~~~~~~~~~~~~~~~~~l   70 (111)
                      +.|.|..+|.+..  ....+.+..|   +.+.|.|. ..+.|.+.+.|++++....      .....+.      ....|
T Consensus       123 ~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~------~~~~L  196 (331)
T 3u83_A          123 LNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVT------VISRY  196 (331)
T ss_dssp             EEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSCEE------EEEEE
T ss_pred             EEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCcEE------EEEEE
Confidence            4677777777642  4455667777   77999998 7888999999998522111      0111111      11347


Q ss_pred             EEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEec
Q psy2442          71 RIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        71 ~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~  106 (111)
                      .+..+.. .|.|.|.|.+.|..+.. ...+.|.|..
T Consensus       197 ~i~~~~~-~d~G~Y~C~a~n~~~~~-~~~~~l~V~~  230 (331)
T 3u83_A          197 RLVPSRE-AHQQSLACIVNYHMDRF-KESLTLNVQY  230 (331)
T ss_dssp             EECCCGG-GTTCEEEEEEEETTEEE-EEEEECCEEE
T ss_pred             EEEeccc-cCCCEEEEEEecCCCcc-eeeEEEEEec
Confidence            7777787 99999999999987653 5555555543

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.01  E-value=8.1e-09  Score=58.94  Aligned_cols=96  Identities=14%  Similarity=0.101  Sum_probs=59.7

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      ..+|.+...+. ..+..|++++|.|...+ +.+.+.|++++..+... ..............|.|.++.. .|+|.|.|.
T Consensus         5 ~~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~-~~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~   80 (257)
T 1b6u_A            5 HRKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTL-HLIGEHHDGVSKANFSIGPMMQ-DLAGTYRCY   80 (257)
T ss_dssp             CCCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEE-EEECBCCTTCEEEEEEECSCCT-TTCEEEEEE
T ss_pred             CCCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcc-eeeeeccCCCceEEEEeecCCc-ccCEEEEEe
Confidence            44566665555 56889999999999864 45689999987644210 0000000000234589999998 999999999


Q ss_pred             eeeCC----CceEeeEEEEEEecC
Q psy2442          88 AENGV----GDAVSAEASLTVYEG  107 (111)
Q Consensus        88 ~~~~~----~~~~~~~~~l~~~~~  107 (111)
                      +.+..    ....+..+.|.|.+.
T Consensus        81 a~~~~~~~~~s~~S~~~~L~V~~~  104 (257)
T 1b6u_A           81 GSVTHSPYQLSAPSDPLDIVITGL  104 (257)
T ss_dssp             EECSSCTTSCCCCCCCEEEEEECS
T ss_pred             EeccCCCccccccCCCEEEecccC
Confidence            87532    111244556666543

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.01  E-value=2.3e-09  Score=60.89  Aligned_cols=88  Identities=17%  Similarity=0.356  Sum_probs=58.6

Q ss_pred             CcceeeecCCcEEEEEEE---eccCCCeEEEEECCeeccCC---------------------CCceEEEeC-CCCCeEEE
Q psy2442          17 PRNQAVKAGGITSFYCIA---RGDPIPVIQWRKNGKRVSGT---------------------QSRYMVQEF-PPGGSLLR   71 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~---~~~~~~~~~w~~~~~~~~~~---------------------~~~~~~~~~-~~~~~~l~   71 (111)
                      +....+..|+.+.|.|.+   .+.|.+.+.|++.+......                     ..+...... ......|.
T Consensus       125 p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~  204 (268)
T 3mj6_A          125 PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIK  204 (268)
T ss_dssp             CSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEE
T ss_pred             CCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEE
Confidence            344678899999999998   56688899999843211000                     011111100 01234599


Q ss_pred             EccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEec
Q psy2442          72 IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        72 ~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~  106 (111)
                      |.++.. .|.|.|.|.+.|..|.. ...+.|.|..
T Consensus       205 i~~v~~-~D~G~Y~C~a~n~~g~~-~~~~~l~V~~  237 (268)
T 3mj6_A          205 LQTVKE-SDQGIYTCSIYVGKLES-RKTIVLHVVQ  237 (268)
T ss_dssp             ECSCCG-GGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             ECcCCh-hhCeEEEEEEEcCCceE-EEEEEEEEEc
Confidence            999998 99999999999987763 6777777743

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.00  E-value=1.5e-08  Score=57.79  Aligned_cols=78  Identities=19%  Similarity=0.355  Sum_probs=53.9

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceec------------cC--CC-CceEEEeCCCCCeEEEEcc
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRV------------SG--TQ-SRYMVQEFPPGGSLLRIEP   74 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~------------~~--~~-~~~~~~~~~~~~~~l~~~~   74 (111)
                      .+...+..+.+..|++++|.|... .+.+.+.|++.  +...            ..  .. .|+...........|.|.+
T Consensus        28 ~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~  106 (268)
T 3pl6_D           28 GVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQR  106 (268)
T ss_dssp             SCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECS
T ss_pred             eeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECC
Confidence            344556667889999999999876 46678999982  2111            00  01 4555543222345699999


Q ss_pred             CCCCCCCeEEEEEeeeC
Q psy2442          75 VRHARDDAVYECVAENG   91 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~   91 (111)
                      ++. .|+|.|.|.+.+.
T Consensus       107 v~~-~D~G~Y~C~~~~~  122 (268)
T 3pl6_D          107 TER-GDSAVYLCATSAL  122 (268)
T ss_dssp             CCG-GGCEEEEEEEESS
T ss_pred             CCc-ccCEEEEEEEecC
Confidence            998 9999999999873

>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}

Probab=99.00  E-value=4.8e-08  Score=49.95  Aligned_cols=79  Identities=20%  Similarity=0.386  Sum_probs=54.0

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceec----c--C--------CCCceEEEeCCCCCeEEEEccC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRV----S--G--------TQSRYMVQEFPPGGSLLRIEPV   75 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~----~--~--------~~~~~~~~~~~~~~~~l~~~~~   75 (111)
                      .+.+.+..+.+.+|++++|.|.........+.|++.  +..+    .  .        ...|+...........|.|.++
T Consensus         7 ~V~Q~p~~~~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~Rf~~~~~~~~~~sL~I~~~   86 (125)
T 3r8b_B            7 AVTQSPRNKVAVTGEKVTLSCKQTNSYFNNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGYKASRPSQENFSLILELA   86 (125)
T ss_dssp             EEEEECSEEEEETTCCEEEEEEEESCCCSEEEEEEECTTSCEEEEEEESSTTCCEECSSCTTCEEEEEETTEEEEEETTC
T ss_pred             cEEecCCeEEEcCCCcEEEEEEECCCCCCeEEEEEECCCCCcEEEEEEcCCccccCCCCCCceEEEecCCCEEEEEECCC
Confidence            445667778899999999999987655558999974  2111    0  0        1234444322123455999999


Q ss_pred             CCCCCCeEEEEEeeeC
Q psy2442          76 RHARDDAVYECVAENG   91 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~   91 (111)
                      +. +|+|.|.|.+...
T Consensus        87 ~~-~Dsg~Y~C~~~~~  101 (125)
T 3r8b_B           87 TP-SQTSVYFCASGGG  101 (125)
T ss_dssp             CG-GGCEEEEEEEEET
T ss_pred             Ch-hhCEEEEEEEcCC
Confidence            98 9999999998763

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.00  E-value=4.3e-09  Score=58.17  Aligned_cols=90  Identities=20%  Similarity=0.330  Sum_probs=54.8

Q ss_pred             eEEec---CCCeeEEcCcceeeecCCcEEEEEEEec-cCCC-eEEEEECCeeccCC-CCceEEEeCCCC----CeEEEEc
Q psy2442           4 KVRFL---DPPEITLRPRNQAVKAGGITSFYCIARG-DPIP-VIQWRKNGKRVSGT-QSRYMVQEFPPG----GSLLRIE   73 (111)
Q Consensus         4 ~l~v~---~~p~~~~~~~~~~~~~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~-~~~~~~~~~~~~----~~~l~~~   73 (111)
                      .|.|.   .+|.+...+.......|+.+.|.|.+.+ .|.+ .+.|+++|..+... ..........+.    ...|.+.
T Consensus       105 ~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~  184 (216)
T 2xzc_L          105 KLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLS  184 (216)
T ss_dssp             EEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEE
T ss_pred             EEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEEC
Confidence            45554   3455543222222336889999999988 4444 89999999887532 000000000001    1247788


Q ss_pred             cCCCCCCCeEEEEEeeeCCCc
Q psy2442          74 PVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      .... .|.|.|.|.+.|....
T Consensus       185 ~~~~-~d~g~Y~C~a~n~~~~  204 (216)
T 2xzc_L          185 KADY-EKHKVYACEVTHQGLS  204 (216)
T ss_dssp             HHHH-TTCCEEEEEEECTTCS
T ss_pred             HHHh-CCCCcEEEEEEcCCCC
Confidence            8877 8999999999997643

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.00  E-value=1.9e-09  Score=61.89  Aligned_cols=71  Identities=11%  Similarity=0.197  Sum_probs=48.7

Q ss_pred             cCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      ....+.+..|+++.|.|.+.+.    +.|++++..+.   .+............|.|.++.. .|.|.|.|.+.|..|.
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~---~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~n~~g~   76 (289)
T 3mjg_X            6 PGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPP---QEMAKAQDGTFSSVLTLTNLTG-LDTGEYFCTHNDSRGL   76 (289)
T ss_dssp             SCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCS---EEEEECTTSCEEEEEEECSCCG-GGCEEEEEECCC----
T ss_pred             CCCeEEEeCCCcEEEEEeccce----EEEECCCCCcc---cceeccCCCceeEEEEEccCCh-hhCEEEEEEEcccCCC
Confidence            3444678899999999998764    89999988763   2222211000124589999998 9999999999987754

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.99  E-value=1.9e-09  Score=63.22  Aligned_cols=87  Identities=18%  Similarity=0.282  Sum_probs=60.3

Q ss_pred             EcCcceeeecCCcEEEEEEEeccC-CCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDP-IPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      .++..+.+..|++++|.|.+.+.+ .+.+.|++++..+.....++..     ....|.|.++.. .|+|.|.|..   .|
T Consensus        11 ~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~-~d~G~Y~C~~---~g   81 (325)
T 1n26_A           11 VARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG-----MGRRLLLRSVQL-HDSGNYSCYR---AG   81 (325)
T ss_dssp             CCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEE-----ESSEEEECSCCG-GGCEEEEEES---SS
T ss_pred             cCCCcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCcccccccc-----ccceEEecccch-hhCeEeEEEe---CC
Confidence            334434456899999999987654 6799999877665322122222     234589999998 9999999993   44


Q ss_pred             ceEeeEEEEEEecCCCCC
Q psy2442          94 DAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        94 ~~~~~~~~l~~~~~~~~p  111 (111)
                      .. .....|.|..+|..|
T Consensus        82 ~~-~~~~~L~V~~pP~~P   98 (325)
T 1n26_A           82 RP-AGTVHLLVDVPPEEP   98 (325)
T ss_dssp             SC-SCEEEEEECCCCCCC
T ss_pred             EE-eeeEEEEeccCCCCC
Confidence            43 566778888777665

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.99  E-value=1.7e-09  Score=59.71  Aligned_cols=91  Identities=16%  Similarity=0.329  Sum_probs=54.0

Q ss_pred             eeEEec----CCCeeEEcCcceeeecCCcEEEEEEEec-cCCC-eEEEEECCeeccCCCCceEEEeCCCC---CeEEEEc
Q psy2442           3 RKVRFL----DPPEITLRPRNQAVKAGGITSFYCIARG-DPIP-VIQWRKNGKRVSGTQSRYMVQEFPPG---GSLLRIE   73 (111)
Q Consensus         3 ~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~   73 (111)
                      ++|.|.    .+|.+...+.......|+.++|.|.+.+ .|.+ .+.|+++|..+............++.   ...|.+.
T Consensus       110 ~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~  189 (218)
T 3s96_B          110 TKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLT  189 (218)
T ss_dssp             EEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC--------------CEEEEEEEEEE
T ss_pred             EEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEe
Confidence            356666    4455554333334456789999999988 4556 89999999887532111111100101   1226666


Q ss_pred             cCCCCCCCeEEEEEeeeCCCc
Q psy2442          74 PVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      .... .|.|.|.|.+.|..+.
T Consensus       190 ~~~~-~d~g~Y~C~a~n~~~~  209 (218)
T 3s96_B          190 SDQW-RSHNSFTCQVTHEGDT  209 (218)
T ss_dssp             HHHH-HTCSCEEEEEEETTEE
T ss_pred             HHHc-cCCCeEEEEEEeCCCc
Confidence            6665 6799999999998754

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=98.99  E-value=4.1e-08  Score=50.16  Aligned_cols=94  Identities=15%  Similarity=0.214  Sum_probs=60.2

Q ss_pred             cCcceeeecCCcEEEEEEEeccCC-CeEEEEECCee-----c-c--C-----CCCceEEEeCC-CCCeEEEEccCCCCCC
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDPI-PVIQWRKNGKR-----V-S--G-----TQSRYMVQEFP-PGGSLLRIEPVRHARD   80 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~-----~-~--~-----~~~~~~~~~~~-~~~~~l~~~~~~~~~d   80 (111)
                      .+..+.+.+|++++|.|....... ..+.|++....     + .  .     ...|+.+.... .....|.|.+++. +|
T Consensus         8 ~p~~v~~~~G~svtL~C~~s~~~~~~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~-~D   86 (124)
T 2nms_A            8 GPTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMK-TD   86 (124)
T ss_dssp             CCSEEEEETTCCEEEEEEECTTCTTSEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCG-GG
T ss_pred             cccEEEEeCCCCEEEEeEEeCCcccccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcCcCCEEEEEEeCCCH-HH
Confidence            445578889999999999865433 36899986421     1 1  0     01344443221 1234589999998 99


Q ss_pred             CeEEEEEeeeCCCceEeeEEEEEEecCCCCC
Q psy2442          81 DAVYECVAENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      +|.|.|.+...... ....+.|.|...|.+|
T Consensus        87 sg~Y~C~~~~~~~~-~~~~v~L~V~~~~~~~  116 (124)
T 2nms_A           87 ADTYWCGIEKTGND-LGVTVQVTIDPAPVTQ  116 (124)
T ss_dssp             CEEEEEEEEETTEE-EEEEEEEEEECCC---
T ss_pred             CEEEEEEEEcCCCC-ccEEEEEEEeCCCcCC
Confidence            99999998875432 3556777787766543

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.99  E-value=4e-09  Score=59.92  Aligned_cols=93  Identities=16%  Similarity=0.274  Sum_probs=56.6

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEe---ccCCCeEEEEECCeeccCC-----------------CCceEEEeC-CCCCeE
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIAR---GDPIPVIQWRKNGKRVSGT-----------------QSRYMVQEF-PPGGSL   69 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~---~~~~~~~~w~~~~~~~~~~-----------------~~~~~~~~~-~~~~~~   69 (111)
                      +.+...+..+.+..|+.+.|.|...   +.+.+.+.|++.+......                 ..++.+... ......
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            3444556667889999999999987   5566689999865432111                 123322110 012245


Q ss_pred             EEEccCCCCCCCeEEEEEeeeCCCce-EeeEEEEEE
Q psy2442          70 LRIEPVRHARDDAVYECVAENGVGDA-VSAEASLTV  104 (111)
Q Consensus        70 l~~~~~~~~~d~g~y~c~~~~~~~~~-~~~~~~l~~  104 (111)
                      |.|.++.. .|+|.|.|.+.+..+.. ....+.|.+
T Consensus        86 L~I~~v~~-~D~G~Y~C~~~~~~~~~~~~~~~~l~V  120 (268)
T 3mj6_A           86 LLLQDVQK-ADEGIYTCEIRLKNESMVMKKPVELWV  120 (268)
T ss_dssp             EEECSCCG-GGCEEEEEEEEETTCCCEEEEEEEEEE
T ss_pred             EEECCCCH-hHCEEEEEEEEecCCcceEEEEEEEEE
Confidence            99999998 99999999999865432 234445544

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.98  E-value=2e-08  Score=56.54  Aligned_cols=79  Identities=19%  Similarity=0.370  Sum_probs=55.1

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEecc--CCCeEEEEECC--eec------c---------C-CCCceEEEeCCC-CCeEE
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGD--PIPVIQWRKNG--KRV------S---------G-TQSRYMVQEFPP-GGSLL   70 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~--~~~------~---------~-~~~~~~~~~~~~-~~~~l   70 (111)
                      .+.+.+..+.+..|++++|.|...+.  +.+.+.|++..  ..+      .         . ...|+....... ....|
T Consensus         3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   82 (242)
T 1hxm_B            3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL   82 (242)
T ss_dssp             EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred             ccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence            34455667789999999999998875  55689999842  111      0         0 224555543221 23459


Q ss_pred             EEccCCCCCCCeEEEEEeeeC
Q psy2442          71 RIEPVRHARDDAVYECVAENG   91 (111)
Q Consensus        71 ~~~~~~~~~d~g~y~c~~~~~   91 (111)
                      .|.+++. .|+|.|.|.+.+.
T Consensus        83 ~I~~v~~-~D~G~Y~C~~~~~  102 (242)
T 1hxm_B           83 TIHNVEK-QDIATYYCALWEA  102 (242)
T ss_dssp             EECSCCG-GGCEEEEEEEEEE
T ss_pred             EECCCCc-ccCEEEEEeeecC
Confidence            9999998 9999999999875

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=98.98  E-value=8.6e-09  Score=51.42  Aligned_cols=83  Identities=17%  Similarity=0.250  Sum_probs=56.1

Q ss_pred             cceeeecCCcEEEEEEE-eccCCCeEEEEECCee-cc-------------CCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442          18 RNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKR-VS-------------GTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~-~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      ..+.+..|++++|.|.. .+.+.+.+.|++.... +.             .-..|+....   ....|.|.+++. +|+|
T Consensus        11 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~---~~~sL~I~~v~~-~DsG   86 (110)
T 2ptt_A           11 PDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEE---NNGALHISNVRK-EDKG   86 (110)
T ss_dssp             CSEEEETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECT---TTCCEEESSCCG-GGCE
T ss_pred             CCEEEecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeC---CCccEEECCCCc-ccCe
Confidence            34678899999999997 5666678999984221 10             0012444321   234499999998 9999


Q ss_pred             EEEEEeeeCCCceEeeEEEEEEec
Q psy2442          83 VYECVAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~~~  106 (111)
                      .|.|.+.+...  ....+.|.|..
T Consensus        87 ~Y~C~v~~~~~--~~~~~~L~V~d  108 (110)
T 2ptt_A           87 TYYMRVLRETE--NELKITLEVFD  108 (110)
T ss_dssp             EEEEEEESSSB--CCEEEEEEEEC
T ss_pred             EEEEEEEcCCC--cEEEEEEEEEc
Confidence            99999987552  24466676654

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.98  E-value=2.1e-08  Score=56.84  Aligned_cols=81  Identities=19%  Similarity=0.319  Sum_probs=55.8

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEecc--CCCeEEEEECC--eec----------------cCCCCceEEEeCC-CCCe
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGD--PIPVIQWRKNG--KRV----------------SGTQSRYMVQEFP-PGGS   68 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~--~~~----------------~~~~~~~~~~~~~-~~~~   68 (111)
                      ++.+...+..+.+.+|++++|.|...+.  +.+.+.|++..  ..+                .....|+...... ....
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   85 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA   85 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred             ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence            3455566777889999999999998873  56689999732  110                0112355544211 1234


Q ss_pred             EEEEccCCCCCCCeEEEEEeeeC
Q psy2442          69 LLRIEPVRHARDDAVYECVAENG   91 (111)
Q Consensus        69 ~l~~~~~~~~~d~g~y~c~~~~~   91 (111)
                      .|.|.++.. .|+|.|.|.+.+.
T Consensus        86 ~L~I~~v~~-~DsG~Y~C~~~~~  107 (256)
T 3juy_B           86 YMELRSLRS-ADTAVYYCARVGE  107 (256)
T ss_dssp             EEEECSCCG-GGCEEEEEEECCC
T ss_pred             EEEECCCCc-ccCEEEEEeEEec
Confidence            599999998 9999999999886

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.98  E-value=6.6e-10  Score=59.95  Aligned_cols=57  Identities=11%  Similarity=0.104  Sum_probs=44.0

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      +..+.|.|.+.+.|.+.+.|++++..+... .+            +.+..+.. .|.|.|.|.+.|..|..
T Consensus       110 ~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~-~~------------~~i~~~~~-~d~G~Y~C~a~N~~g~~  166 (176)
T 1hng_A          110 CSNATLTCEVLEGTDVELKLYQGKEHLRSL-RQ------------KTMSYQWT-NLRAPFKCKAVNRVSQE  166 (176)
T ss_dssp             TTTTEEEEECSSCSSCEEEEEETTEEEEEE-SS------------SEEEEECS-CCSSCEEEEEEETTEEE
T ss_pred             CCcEEEEEEecCCCCcEEEEEECCEECCCC-Cc------------EEEEEEEc-cCCeEEEEEEEecCCCc
Confidence            456899999999999999999998876432 11            22335556 89999999999998764

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.98  E-value=3.6e-09  Score=58.47  Aligned_cols=81  Identities=10%  Similarity=-0.033  Sum_probs=52.9

Q ss_pred             CcceeeecC--CcEEEEEEEeccCCCeEEEEEC---CeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeC
Q psy2442          17 PRNQAVKAG--GITSFYCIARGDPIPVIQWRKN---GKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENG   91 (111)
Q Consensus        17 ~~~~~~~~g--~~~~l~c~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~   91 (111)
                      +..+.+.+|  +.+.|.|.+.+ |.+.+.|++.   +..+... .++...    ....|.|.++.. .|+|.|.|.+.|.
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~-~~~~~~----~~~~l~I~~v~~-~D~G~Y~C~a~n~   86 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDG-NRISWD----SKKGFTIPSYMI-SYAGMVFCEAKIN   86 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCS-SSCEEE----TTTEEEEEGGGT-TTCSEEEEEEC--
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCC-Cccccc----CCccEEEccCCh-hcCceEEEEEEEC
Confidence            355778889  99999999876 6678999874   5444322 333322    334489999998 9999999999885


Q ss_pred             CCceEeeEEEEEE
Q psy2442          92 VGDAVSAEASLTV  104 (111)
Q Consensus        92 ~~~~~~~~~~l~~  104 (111)
                      .+...+..+.+.+
T Consensus        87 ~~~~~s~~~~l~v   99 (213)
T 2x1w_L           87 DESYQSIMYIVVV   99 (213)
T ss_dssp             --CEECCCEEEEE
T ss_pred             CeeEEEEEEEEEE
Confidence            4432222244444

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=98.98  E-value=3.7e-08  Score=50.98  Aligned_cols=79  Identities=18%  Similarity=0.310  Sum_probs=54.2

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccC-CCeEEEEEC--Ceec------------cCCCCceEEEeC-CCCCeEEEEccCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRKN--GKRV------------SGTQSRYMVQEF-PPGGSLLRIEPVR   76 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~--~~~~------------~~~~~~~~~~~~-~~~~~~l~~~~~~   76 (111)
                      +.+.+..+.+.+|++++|.|...... ...+.|++.  +..+            .....|+..... ......|.|.+++
T Consensus        12 v~Q~p~~v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~   91 (134)
T 3bik_B           12 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   91 (134)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEECSCC
T ss_pred             EEECCCeEEEeCCCCEEEEEEeCCCCCCcEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecCCCCEEEEEECCCC
Confidence            34556678899999999999987643 458999974  2211            011356655422 2233459999999


Q ss_pred             CCCCCeEEEEEeeeCC
Q psy2442          77 HARDDAVYECVAENGV   92 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~   92 (111)
                      . +|+|.|.|.+.+..
T Consensus        92 ~-~Dsg~Y~C~~~~~~  106 (134)
T 3bik_B           92 R-NDSGIYLCGAISLH  106 (134)
T ss_dssp             G-GGCEEEEEEEEECS
T ss_pred             h-HHCEEEEEEEEeCC
Confidence            8 99999999987643

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.98  E-value=8.8e-09  Score=59.17  Aligned_cols=80  Identities=14%  Similarity=0.251  Sum_probs=57.6

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--eec--------------c--CCCCceEEEeCCCCCeEEEE
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KRV--------------S--GTQSRYMVQEFPPGGSLLRI   72 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~--------------~--~~~~~~~~~~~~~~~~~l~~   72 (111)
                      +.+...+..+.+..|++++|.|...+.+.+.+.|++..  ...              .  ....|+...........|.|
T Consensus        25 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I  104 (279)
T 2wbj_D           25 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV  104 (279)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEE
T ss_pred             ceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEE
Confidence            45566677788999999999999987777789999853  110              0  01245555432223346999


Q ss_pred             ccCCCCCCCeEEEEEeeeC
Q psy2442          73 EPVRHARDDAVYECVAENG   91 (111)
Q Consensus        73 ~~~~~~~d~g~y~c~~~~~   91 (111)
                      .+++. .|+|.|.|.+.+.
T Consensus       105 ~~v~~-~D~G~Y~C~~~~~  122 (279)
T 2wbj_D          105 TSAHP-EDSSFYICSARDL  122 (279)
T ss_dssp             SSCCG-GGCEEEEEEEEET
T ss_pred             ccCCc-cCCEEEEEEEccc
Confidence            99998 9999999999983

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.98  E-value=3.7e-09  Score=57.79  Aligned_cols=87  Identities=23%  Similarity=0.296  Sum_probs=59.2

Q ss_pred             eeeecCCcEEEEEEEe----ccCCCeEEEEECCeeccCC-----------CCceEEEeCCCCCeEEEEccCCCCCCCeEE
Q psy2442          20 QAVKAGGITSFYCIAR----GDPIPVIQWRKNGKRVSGT-----------QSRYMVQEFPPGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~----~~~~~~~~w~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y   84 (111)
                      +.+..|+++.|.|...    +.+.+.+.|++++..+...           ..+..+. .. ....|.|.++.. .|+|.|
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~-~~-~~~~L~I~~v~~-~D~G~Y   80 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-IT-NNLSIVILALRP-SDEGTY   80 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-ST-TTTEEEECSCCG-GGCEEE
T ss_pred             EEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc-cC-CCcEEEEecccc-hhCeEE
Confidence            5678999999999985    3456789999988765200           1122221 11 334599999998 999999


Q ss_pred             EEEeeeCCCceE----eeEEEEEEecCCC
Q psy2442          85 ECVAENGVGDAV----SAEASLTVYEGEE  109 (111)
Q Consensus        85 ~c~~~~~~~~~~----~~~~~l~~~~~~~  109 (111)
                      .|.+.|..|...    ...+.|.|..++.
T Consensus        81 ~C~~~~~~g~~~~~~~~~~~~l~V~~~~~  109 (201)
T 1dr9_A           81 ECVVLKYEKDAFKREHLAEVTLSVKADFP  109 (201)
T ss_dssp             EEEEEECCTTSCEEEEEEEEEEEEECCCC
T ss_pred             EEEEEcCCCCccccccccEEEEEEcCCCC
Confidence            999999765432    2456666665543

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.98  E-value=1.2e-08  Score=56.12  Aligned_cols=86  Identities=15%  Similarity=0.183  Sum_probs=54.1

Q ss_pred             ceeeecCCcEEEEEEEeccCCCe---EEEEECCeecc---------------CCCCceEEEeC------CCCCeEEEEcc
Q psy2442          19 NQAVKAGGITSFYCIARGDPIPV---IQWRKNGKRVS---------------GTQSRYMVQEF------PPGGSLLRIEP   74 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~~~---~~w~~~~~~~~---------------~~~~~~~~~~~------~~~~~~l~~~~   74 (111)
                      .+.+..|++++|.|.+.+.+.+.   +.|++++....               ....+......      ......|.|.+
T Consensus        10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   89 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG   89 (225)
T ss_dssp             EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred             EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence            35678899999999998877663   78998754321               00011111100      00223499999


Q ss_pred             CCCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          75 VRHARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      +.. .|+|.|.|.+.+..+........+.+.
T Consensus        90 v~~-~D~G~Y~C~~~~~~~~~~~~~~~~~~~  119 (225)
T 4fmk_A           90 LRV-EDEGNYTCEFATFPNGTRRGVTWLRVI  119 (225)
T ss_dssp             CCG-GGCEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCH-HHCcceEEEEEeCCCcceeeeeeeeee
Confidence            998 999999999988766433333334333

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.97  E-value=7.5e-09  Score=58.74  Aligned_cols=81  Identities=17%  Similarity=0.215  Sum_probs=56.5

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--eecc------------CCCCceEEE-eCCCCCeEEEEccCC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KRVS------------GTQSRYMVQ-EFPPGGSLLRIEPVR   76 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~~------------~~~~~~~~~-~~~~~~~~l~~~~~~   76 (111)
                      .+.+.+..+.+.+|++++|.|...+.+.+.+.|++..  ....            ....++... ........|.|.++.
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   84 (256)
T 3tf7_C            5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH   84 (256)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred             EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence            3445666678999999999999998888899999832  1100            011344432 111133459999999


Q ss_pred             CCCCCeEEEEEeeeCCC
Q psy2442          77 HARDDAVYECVAENGVG   93 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~   93 (111)
                      . .|+|.|.|.+.|..+
T Consensus        85 ~-~DsG~Y~C~~~~~~~  100 (256)
T 3tf7_C           85 R-SDSAVYFCAVSAKGT  100 (256)
T ss_dssp             G-GGCSEEEEEEECTTC
T ss_pred             c-ccCEEEEEEEecCCC
Confidence            8 999999999988643

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.96  E-value=6e-09  Score=52.36  Aligned_cols=89  Identities=20%  Similarity=0.196  Sum_probs=55.7

Q ss_pred             CcceeeecCCcEEEEEEEec-cCCCeEEEEECCee--------c--c------CCCCceEEEeC-CCCCeEEEEccCCCC
Q psy2442          17 PRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKR--------V--S------GTQSRYMVQEF-PPGGSLLRIEPVRHA   78 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~--------~--~------~~~~~~~~~~~-~~~~~~l~~~~~~~~   78 (111)
                      +..+.+..|++++|.|.... .....+.|++....        +  .      ....++.+... ......|.|.+++. 
T Consensus         4 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~-   82 (116)
T 2or8_A            4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVE-   82 (116)
T ss_dssp             CEEEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCG-
T ss_pred             cceEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCc-
Confidence            34467889999999999765 33457999987521        0  0      01133332110 11223499999998 


Q ss_pred             CCCeEEEEEeeeCCCce-EeeEEEEEEec
Q psy2442          79 RDDAVYECVAENGVGDA-VSAEASLTVYE  106 (111)
Q Consensus        79 ~d~g~y~c~~~~~~~~~-~~~~~~l~~~~  106 (111)
                      .|+|.|.|.+.+..+.. ....+.|.|..
T Consensus        83 ~DsG~Y~C~v~~~~~~~~~~~~~~l~V~p  111 (116)
T 2or8_A           83 SDSGLYCCRVEIPGWFNDQKVTFSLQVKP  111 (116)
T ss_dssp             GGCEEEEEEECCSSTTCCEEEEEEEEEEC
T ss_pred             ccCEEEEEEEEcCCcccccEEEEEEEECC
Confidence            99999999998864331 24455555543

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.96  E-value=1.3e-08  Score=62.99  Aligned_cols=76  Identities=16%  Similarity=0.308  Sum_probs=54.7

Q ss_pred             cCcceeeecCCcEEEEEEEeccCCCeEEEEECCe--ecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK--RVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      .+..+.+..|+.+.|.|.+.+.+.+.+.|++++.  .+.           ....++.... ......|.|.++.. .|+|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~-~D~G   83 (523)
T 2rcj_C            6 QPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSK-SGTSASLAISGLEA-EDES   83 (523)
T ss_pred             cCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEec-CCCEEEEEECCCCh-hhCE
Confidence            3556788999999999999888888999998642  111           0113444221 11334599999998 9999


Q ss_pred             EEEEEeeeCCC
Q psy2442          83 VYECVAENGVG   93 (111)
Q Consensus        83 ~y~c~~~~~~~   93 (111)
                      .|.|.+.|..|
T Consensus        84 ~Y~C~a~n~~g   94 (523)
T 2rcj_C           84 DYYCASWNSSD   94 (523)
T ss_pred             EEEEEEccCCC
Confidence            99999998754

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.96  E-value=1.5e-08  Score=57.10  Aligned_cols=71  Identities=23%  Similarity=0.326  Sum_probs=49.4

Q ss_pred             eeeecCCcEEEEEEEeccC--CCeEEEEECC--eecc---------------CCCCceEEEeC-CCCCeEEEEccCCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDP--IPVIQWRKNG--KRVS---------------GTQSRYMVQEF-PPGGSLLRIEPVRHAR   79 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~---------------~~~~~~~~~~~-~~~~~~l~~~~~~~~~   79 (111)
                      ..+..|++++|.|.+.+.+  .+.+.|++..  ..+.               ....++..... ......|.|.++.. .
T Consensus       132 ~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~  210 (242)
T 2znx_A          132 SLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTT-E  210 (242)
T ss_dssp             SEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCG-G
T ss_pred             ceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCc-C
Confidence            4688999999999998765  4689999842  2210               01234444321 11234699999998 9


Q ss_pred             CCeEEEEEeeeC
Q psy2442          80 DDAVYECVAENG   91 (111)
Q Consensus        80 d~g~y~c~~~~~   91 (111)
                      |+|.|.|.+.|.
T Consensus       211 D~G~Y~C~a~~~  222 (242)
T 2znx_A          211 DTATYYCANXDG  222 (242)
T ss_dssp             GCEEEEEEETTS
T ss_pred             cCEEEEEeccCC
Confidence            999999999884

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.96  E-value=2.5e-09  Score=58.18  Aligned_cols=75  Identities=23%  Similarity=0.211  Sum_probs=56.2

Q ss_pred             cCcceeeecCCcEEEEEE-EeccCC-CeEEEEECCeeccCC-CCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          16 RPRNQAVKAGGITSFYCI-ARGDPI-PVIQWRKNGKRVSGT-QSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~-~~~~~~-~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      .+..+.+..|+.+.|.|. ..+.|. +.+.|++++..+... ..+.....   ....|.|.++.. .|.|.|.|.+.+..
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~-~d~G~Y~C~~~~~~   89 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQ---TNGNLYIANVEA-SDKGNYSCFVSSPS   89 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECT---TTCCEEESSCCG-GGCEEEEEEEEEGG
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEc---CCCeEEECcCCc-ccCeEEEEEEEecC
Confidence            345578899999999999 888888 899999998776422 12222222   334499999998 99999999999865


Q ss_pred             Cc
Q psy2442          93 GD   94 (111)
Q Consensus        93 ~~   94 (111)
                      +.
T Consensus        90 ~~   91 (201)
T 3s97_C           90 IT   91 (201)
T ss_dssp             GT
T ss_pred             CC
Confidence            43

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.96  E-value=1.1e-08  Score=52.25  Aligned_cols=85  Identities=14%  Similarity=0.200  Sum_probs=53.7

Q ss_pred             cCcceeeecCCcEEEEEEEeccCCC----eEEEEECC----------------eeccC---CCCceEEEeCC--------
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDPIP----VIQWRKNG----------------KRVSG---TQSRYMVQEFP--------   64 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~~~----~~~w~~~~----------------~~~~~---~~~~~~~~~~~--------   64 (111)
                      .+..+.+..|++++|.|.....+.+    .+.|++..                .....   -..|+.+....        
T Consensus         8 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~   87 (128)
T 3r0n_A            8 VLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTE   87 (128)
T ss_dssp             CCSEEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCC
T ss_pred             cCCeEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccc
Confidence            3445678899999999998876554    78899862                11111   11344333211        


Q ss_pred             --CCCeEEEEccCCCCCCCeEEEEEeee-CCCceEeeEEEE
Q psy2442          65 --PGGSLLRIEPVRHARDDAVYECVAEN-GVGDAVSAEASL  102 (111)
Q Consensus        65 --~~~~~l~~~~~~~~~d~g~y~c~~~~-~~~~~~~~~~~l  102 (111)
                        .....|.|.++.. .|+|.|.|.+.+ ..|. ......|
T Consensus        88 ~~~~~~sL~I~~v~~-~D~G~Y~C~v~~~~~g~-~~~~~~L  126 (128)
T 3r0n_A           88 AELQDATLALHGLTV-EDEGNYTCEFATFPKGS-VRGMTWL  126 (128)
T ss_dssp             CBCSBCCEEECSCCG-GGCEEEEEEEEEETTEE-EEEEEEE
T ss_pred             cCCCCeEEEEccCCc-hhCeEEEEEEEeCCCCC-cccEEEE
Confidence              0123599999998 999999998765 4343 2444444

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=98.95  E-value=8.6e-09  Score=59.82  Aligned_cols=69  Identities=20%  Similarity=0.335  Sum_probs=54.9

Q ss_pred             eeeecCCcEEEEEEE------eccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee-eCC
Q psy2442          20 QAVKAGGITSFYCIA------RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE-NGV   92 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~------~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~-~~~   92 (111)
                      ..+..|+.+.|.|.+      .+.|.+.+.|++++..+.....++..     ....|.|.++.. .|.|.|.|.+. |..
T Consensus       113 ~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~-----~~~~L~i~~v~~-~d~G~Y~C~a~~n~~  186 (315)
T 1itb_B          113 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG-----VKDRLIVMNVAE-KHRGNYTCHASYTYL  186 (315)
T ss_dssp             EEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEE-----ETTEEEESSCCG-GGCEEEEEEEEEEET
T ss_pred             eEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEee-----cCceEEEEecee-hhCcEEEEEEEcCCC
Confidence            356789999999998      78888899999999988644334332     233599999998 99999999999 676


Q ss_pred             Cc
Q psy2442          93 GD   94 (111)
Q Consensus        93 ~~   94 (111)
                      |.
T Consensus       187 g~  188 (315)
T 1itb_B          187 GK  188 (315)
T ss_dssp             TE
T ss_pred             Cc
Confidence            65

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.95  E-value=7.8e-09  Score=56.92  Aligned_cols=84  Identities=14%  Similarity=0.247  Sum_probs=52.4

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeC-CC---CCeEEEEccCCCCCCCe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEF-PP---GGSLLRIEPVRHARDDA   82 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~d~g   82 (111)
                      .+|.+...+.......|+.++|.|.+.+.+++  .+.|+++|..+............ ++   ....|.+..... .|.|
T Consensus       114 ~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g  192 (212)
T 1q0x_L          114 SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAW-ERHS  192 (212)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHH-TTCC
T ss_pred             CCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHc-cCCC
Confidence            35555443332234468899999999885443  89999999887532100000111 10   112377777776 8999


Q ss_pred             EEEEEeeeCCC
Q psy2442          83 VYECVAENGVG   93 (111)
Q Consensus        83 ~y~c~~~~~~~   93 (111)
                      .|.|.+.|...
T Consensus       193 ~Y~C~a~n~~~  203 (212)
T 1q0x_L          193 SYSCQVTHEGH  203 (212)
T ss_dssp             EEEEEEEETTE
T ss_pred             cEEEEEEeCCc
Confidence            99999999753

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=98.95  E-value=4.1e-09  Score=61.47  Aligned_cols=89  Identities=17%  Similarity=0.215  Sum_probs=61.1

Q ss_pred             cceeeecCCcEEEEEEEecc-----CCCeEEEEECCeeccCCCCceEEEeCCCC-CeEEEEccCCCCCCCeEEEEEeeeC
Q psy2442          18 RNQAVKAGGITSFYCIARGD-----PIPVIQWRKNGKRVSGTQSRYMVQEFPPG-GSLLRIEPVRHARDDAVYECVAENG   91 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~d~g~y~c~~~~~   91 (111)
                      ....+..|+.++|.|.+.+.     +.+.+.|.+++..+..  .++... .++. ...|.|.++.. .|.|.|.|.+.+.
T Consensus         8 ~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~--~~~~~~-~~~~~~~~L~i~~~~~-~d~g~y~c~~~~~   83 (313)
T 2d9q_B            8 SAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPG--GRQQRL-SDGTQESIITLPHLNH-TQAFLSCSLNWGN   83 (313)
T ss_dssp             SCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTT--CEECCC-SSSCCCEEEEESCCCS-SEEEEEEEEESSS
T ss_pred             CCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCc--cceEEE-ecCeEEEEEEEeccCC-CccceEEeeecCC
Confidence            34578899999999999886     5678999999887743  222111 1111 15599999998 9999999987654


Q ss_pred             CCceEeeEEEEEEecCCCCC
Q psy2442          92 VGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        92 ~~~~~~~~~~l~~~~~~~~p  111 (111)
                      .+. ......|.+..+|..|
T Consensus        84 ~~~-~~~~~~l~v~~~P~~P  102 (313)
T 2d9q_B           84 SLQ-ILDQVELRAGYPPAIP  102 (313)
T ss_dssp             SEE-EEEEEEEEECCCCCCC
T ss_pred             Cce-eEEEEEEccCCCCCCC
Confidence            332 2445666666677655

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=98.94  E-value=3.2e-08  Score=49.74  Aligned_cols=75  Identities=19%  Similarity=0.349  Sum_probs=52.2

Q ss_pred             EcCcceeeecCCcEEEEEEEecc-CCCeEEEEECCe-----e---c---cC----------CCCceEEEeC-CCCCeEEE
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGK-----R---V---SG----------TQSRYMVQEF-PPGGSLLR   71 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~-----~---~---~~----------~~~~~~~~~~-~~~~~~l~   71 (111)
                      +.+..+.+.+|++++|.|...+. ....+.|++...     .   +   ..          ...|+..... ......|.
T Consensus         3 Q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (115)
T 2atp_B            3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS   82 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred             cCCCCEEEcCCCcEEEEEEecCCCCcccEEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEeCCCCEEEEE
Confidence            44566788999999999998764 455899987532     1   1   00          1246655542 22334599


Q ss_pred             EccCCCCCCCeEEEEEeee
Q psy2442          72 IEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        72 ~~~~~~~~d~g~y~c~~~~   90 (111)
                      |.+++. +|+|.|.|.+..
T Consensus        83 I~~~~~-~DsG~Y~C~~~~  100 (115)
T 2atp_B           83 IMNVKP-EDSDFYFCATVG  100 (115)
T ss_dssp             ECSCCG-GGCEEEEEEEEC
T ss_pred             ECCCCH-HHCEEEEEeEcc
Confidence            999998 999999999875

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.94  E-value=1.5e-08  Score=56.62  Aligned_cols=74  Identities=22%  Similarity=0.372  Sum_probs=52.0

Q ss_pred             CcceeeecCCcEEEEEEEeccC--CCeEEEEECC--eec------cC----------CCCceEEEeCC-CCCeEEEEccC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KRV------SG----------TQSRYMVQEFP-PGGSLLRIEPV   75 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~------~~----------~~~~~~~~~~~-~~~~~l~~~~~   75 (111)
                      +..+.+..|++++|.|...+.+  .+.+.|++..  ..+      ..          ...|+...... .....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (227)
T 1mju_H            7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (227)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence            4456788999999999998765  5689999853  211      00          02455544321 13345999999


Q ss_pred             CCCCCCeEEEEEeeeC
Q psy2442          76 RHARDDAVYECVAENG   91 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~   91 (111)
                      +. .|+|.|.|.+.+.
T Consensus        87 ~~-~D~G~Y~C~~~~~  101 (227)
T 1mju_H           87 TS-DDSAVYYCANKLG  101 (227)
T ss_dssp             CG-GGCEEEEEEEEET
T ss_pred             Cc-ccCEEEEEEECCC
Confidence            98 9999999999875

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.94  E-value=1.7e-08  Score=54.59  Aligned_cols=88  Identities=17%  Similarity=0.249  Sum_probs=59.4

Q ss_pred             cceeeecCCcEEEEEEEec-cCCCeEEEEEC-Ceecc---C--------C--CCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442          18 RNQAVKAGGITSFYCIARG-DPIPVIQWRKN-GKRVS---G--------T--QSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~-~~~~~---~--------~--~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      ..+.+..|++++|.|.... .+.+.+.|++. +..+.   .        .  ..|+.+..   ....|.|.+++. .|+|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~---~~~sL~I~~v~~-~D~G   82 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDK---TNGALRIYNVSK-EDRG   82 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECT---TTCCEEECSCCG-GGCE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeC---CCccEEEcCCCH-HHCe
Confidence            3467889999999998744 33568999984 22111   0        1  13444411   334499999998 9999


Q ss_pred             EEEEEeeeCCCceEeeEEEEEEecCCCCC
Q psy2442          83 VYECVAENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      .|.|.+.+.. . ....+.|.|..++..|
T Consensus        83 ~Y~C~v~~~~-~-~~~~~~L~V~~~~~~P  109 (180)
T 2dru_A           83 DYYMRMLHET-E-DQWKITMEVYEMVSKP  109 (180)
T ss_dssp             EEEEEEESSS-E-EEEEEEEEEECCCCCC
T ss_pred             EEEEEEEcCC-e-EEEEEEEEEECCCCCC
Confidence            9999987754 3 3667788887765544

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.94  E-value=5e-08  Score=56.61  Aligned_cols=90  Identities=13%  Similarity=0.153  Sum_probs=61.6

Q ss_pred             cCcceeeecCCcEEEEEEEecc-------CCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          16 RPRNQAVKAGGITSFYCIARGD-------PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~-------~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+....+..|+.++|.|.+.+.       +.+.+.|.++|..+..  .++.....  ....|.+.++.. . .|.|.|.+
T Consensus        10 ~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~--~~~~~~~~--~~~~L~i~~~~~-~-~g~Y~C~a   83 (303)
T 1i1r_A           10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPK--EQYTIINR--TASSVTFTDIAS-L-NIQLTCNI   83 (303)
T ss_dssp             ESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCG--GGCEEEET--TEEEEEECSCCC-S-EEEEEEEE
T ss_pred             ccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECCh--hheeeeCC--cEEEEEEcCcCC-C-ceEEEEec
Confidence            4455678999999999999863       6679999999998753  24433321  234589999987 6 59999999


Q ss_pred             eeCCCceE-eeEEEEEEecCCCCC
Q psy2442          89 ENGVGDAV-SAEASLTVYEGEEKP  111 (111)
Q Consensus        89 ~~~~~~~~-~~~~~l~~~~~~~~p  111 (111)
                      .+..+... .....+.+..+|..|
T Consensus        84 ~~~g~~~~~~~~~~l~v~~~P~~P  107 (303)
T 1i1r_A           84 LTFGQLEQNVYGITIISGLPPEKP  107 (303)
T ss_dssp             EETTTEEEEEEEEEEEEECCCCCC
T ss_pred             ccCCCcceEEEEEEEeccCCCCCC
Confidence            87422211 223455566677665

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.94  E-value=5.3e-10  Score=61.61  Aligned_cols=85  Identities=13%  Similarity=0.261  Sum_probs=53.8

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEecc-CC-CeEEEEECCeeccCCCCceEEEeCCC---CCeEEEEccCCCCCCCeE
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGD-PI-PVIQWRKNGKRVSGTQSRYMVQEFPP---GGSLLRIEPVRHARDDAV   83 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~d~g~   83 (111)
                      .+|.+...+....+..|+.+.|.|.+.+. |. +.+.|+++|..+.............+   ....|.|..+.. .|.|.
T Consensus       112 ~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~  190 (212)
T 1nfd_E          112 SSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQW-KSHNR  190 (212)
T ss_dssp             BCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHH-HTCSC
T ss_pred             CCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhc-CCCCe
Confidence            34555433333344578999999999886 44 68999999988753211100000000   012367778877 89999


Q ss_pred             EEEEeeeCCCc
Q psy2442          84 YECVAENGVGD   94 (111)
Q Consensus        84 y~c~~~~~~~~   94 (111)
                      |.|.+.|..+.
T Consensus       191 Y~C~a~n~~~~  201 (212)
T 1nfd_E          191 VSCQVTHEGET  201 (212)
T ss_dssp             EEEEEECTTTT
T ss_pred             EEEEEEeCCce
Confidence            99999997654

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.94  E-value=8e-09  Score=58.98  Aligned_cols=99  Identities=14%  Similarity=0.204  Sum_probs=61.6

Q ss_pred             eEEecC---CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           4 KVRFLD---PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         4 ~l~v~~---~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .|.|..   +|.+...+. ..+..|++++|.|.+.+. .+.+.|+++|..+........... ......|.|.++.   |
T Consensus        98 ~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~-~~~~~~l~I~~v~---D  171 (257)
T 1b6u_A           98 DIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPKVN-GTFQADFPLGPAT---H  171 (257)
T ss_dssp             EEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCCSS-SCCBEEEEEEECC---S
T ss_pred             EEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCcccccccccC-CceeEEEEecccc---c
Confidence            455543   355554444 367899999999998775 458999999876542211111000 0024558888774   9


Q ss_pred             CeEEEEEeeeCCC----ceEeeEEEEEEecCC
Q psy2442          81 DAVYECVAENGVG----DAVSAEASLTVYEGE  108 (111)
Q Consensus        81 ~g~y~c~~~~~~~----~~~~~~~~l~~~~~~  108 (111)
                      .|.|.|.+.+...    ...+..+.|.|.++|
T Consensus       172 ~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p  203 (257)
T 1b6u_A          172 GGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNP  203 (257)
T ss_dssp             CEEEEEEEECSSCTTBBCCCCCCEEECCBCCC
T ss_pred             CEEEEEEEEcCCCCcccccCCCCEEEEEeccC
Confidence            9999999986421    123556777776664

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.94  E-value=4e-09  Score=58.08  Aligned_cols=72  Identities=21%  Similarity=0.381  Sum_probs=52.0

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCCCeE
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAV   83 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~   83 (111)
                      +..+.+..|+.++|.|...+.+.+.+.|++.  +..+.           ....++...... ....|.|.++.. .|+|.
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~-~D~G~   83 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSG-TTATLTISGAQP-EDEAA   83 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEET-TEEEEEETTCCG-GGCSE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeC-CEEEEEECcCCc-ccCEE
Confidence            5567888999999999988877778999874  22220           012455444311 334599999998 99999


Q ss_pred             EEEEeee
Q psy2442          84 YECVAEN   90 (111)
Q Consensus        84 y~c~~~~   90 (111)
                      |.|.+.|
T Consensus        84 Y~C~~~n   90 (212)
T 1nfd_E           84 YYCLSSY   90 (212)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            9999996

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=98.94  E-value=6.9e-09  Score=52.33  Aligned_cols=76  Identities=20%  Similarity=0.258  Sum_probs=52.2

Q ss_pred             EEcCcceeeecCCcEEEEEEEecc-CCCeEEEEECC--ee---c---c-C-----CCCceEEEe-CCCCCeEEEEccCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNG--KR---V---S-G-----TQSRYMVQE-FPPGGSLLRIEPVRH   77 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~--~~---~---~-~-----~~~~~~~~~-~~~~~~~l~~~~~~~   77 (111)
                      .+.+..+.+.+|++++|.|...+. +...+.|++..  ..   +   . .     ...|+.... .......|.|.+++.
T Consensus         4 ~q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~   83 (116)
T 1fo0_A            4 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   83 (116)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CcCCCcEEEecCCcEEEEeEecCCCCCeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence            345666789999999999998776 55589998742  11   1   0 0     023555431 121334599999998


Q ss_pred             CCCCeEEEEEeee
Q psy2442          78 ARDDAVYECVAEN   90 (111)
Q Consensus        78 ~~d~g~y~c~~~~   90 (111)
                       +|+|.|.|.+.+
T Consensus        84 -~DsG~Y~C~~~~   95 (116)
T 1fo0_A           84 -EDSAVYFCAMRG   95 (116)
T ss_dssp             -GGCEEEEEEEEC
T ss_pred             -hhCEEEEEEEEc
Confidence             999999999886

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=98.93  E-value=2.6e-08  Score=51.64  Aligned_cols=76  Identities=16%  Similarity=0.284  Sum_probs=51.8

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccC---CCeEEEEECCe--e---cc--------CCCCceEEEeCCCCCeEEEEccCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDP---IPVIQWRKNGK--R---VS--------GTQSRYMVQEFPPGGSLLRIEPVR   76 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~--~---~~--------~~~~~~~~~~~~~~~~~l~~~~~~   76 (111)
                      +.+++ .+.+.+|++++|.|......   ...+.|++...  .   +.        ....|+...... ....|.|.+++
T Consensus         9 v~q~~-~v~v~~G~~vtL~C~~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~-~~~sL~I~~v~   86 (135)
T 1p4b_L            9 VTQES-ALTTSPGETVTLTCRSSTGAVTTSNYASWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIG-DKAALTITGAQ   86 (135)
T ss_dssp             EECCS-EEEECTTCEEEEEEEETTSSCCGGGCCEEEEEEGGGEEEEEEETTTEECTTCCTTEEEEEET-TEEEEEEESCC
T ss_pred             EEECC-cEEEcCCCCEEEEEEecCCCcCCCCEEEEEEECCCCCCEEEEEeCCccCCCCCCCEEEEcCC-CEEEEEECCCC
Confidence            33444 37889999999999987654   45789987421  1   10        112455554322 33459999999


Q ss_pred             CCCCCeEEEEEeeeC
Q psy2442          77 HARDDAVYECVAENG   91 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~   91 (111)
                      . +|+|.|.|.+.+.
T Consensus        87 ~-~DsG~Y~C~~~~~  100 (135)
T 1p4b_L           87 T-EDEAIYFCALWYS  100 (135)
T ss_dssp             G-GGCEEEEEEEECS
T ss_pred             h-hHCEEEEEEEecC
Confidence            8 9999999998764

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.93  E-value=1.7e-08  Score=55.33  Aligned_cols=82  Identities=13%  Similarity=0.258  Sum_probs=52.7

Q ss_pred             eEEecC---CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442           4 KVRFLD---PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus         4 ~l~v~~---~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .|.|..   +|.+...+. ..+..|+.++|.|.+.+ +.+.+.|++++..+........... ......|.|.++.   |
T Consensus        99 ~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~-~~~~~~L~i~~v~---d  172 (201)
T 1nkr_A           99 DIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVN-GTFQADFPLGPAT---H  172 (201)
T ss_dssp             EEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEET-TEEEEEEEEEECC---S
T ss_pred             EEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccC-CceEEEEEeCCcC---C
Confidence            455543   356655454 36789999999999876 4568999999876542111111110 0013447887774   9


Q ss_pred             CeEEEEEeeeC
Q psy2442          81 DAVYECVAENG   91 (111)
Q Consensus        81 ~g~y~c~~~~~   91 (111)
                      +|.|.|.+.+.
T Consensus       173 ~G~Y~C~a~~~  183 (201)
T 1nkr_A          173 GGTYRCFGSFH  183 (201)
T ss_dssp             CEEEEEEEEET
T ss_pred             CeeEEEEEEcC
Confidence            99999998864

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.93  E-value=1.4e-08  Score=56.71  Aligned_cols=85  Identities=19%  Similarity=0.318  Sum_probs=52.8

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEecc-C-CCeEEEEECCeeccCCC-CceEEEeCCCC----CeEEEEccCCCCCCC
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGD-P-IPVIQWRKNGKRVSGTQ-SRYMVQEFPPG----GSLLRIEPVRHARDD   81 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~-~-~~~~~w~~~~~~~~~~~-~~~~~~~~~~~----~~~l~~~~~~~~~d~   81 (111)
                      .+|.+...+.......|+.++|.|.+.+. | .+.+.|++++..+.... ...........    ...|.+..... .|.
T Consensus       134 ~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~  212 (237)
T 3sob_L          134 AAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY-EKH  212 (237)
T ss_dssp             BCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHH-TTC
T ss_pred             CCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHc-cCC
Confidence            34555443333334468889999999884 4 47999999998875320 00000000001    13366777776 889


Q ss_pred             eEEEEEeeeCCCc
Q psy2442          82 AVYECVAENGVGD   94 (111)
Q Consensus        82 g~y~c~~~~~~~~   94 (111)
                      |.|.|.+.|....
T Consensus       213 g~Y~C~a~n~~~~  225 (237)
T 3sob_L          213 KVYACEVTHQGLS  225 (237)
T ss_dssp             CEEEEEEECTTCS
T ss_pred             CcEEEEEeeCCCC
Confidence            9999999997643

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.93  E-value=9.1e-09  Score=58.15  Aligned_cols=90  Identities=16%  Similarity=0.256  Sum_probs=55.5

Q ss_pred             eEEecC---CCeeEEcCcceeeecCCcEEEEEEEeccCC--CeEEEEECCeeccCC-CCceEEEeCCC----CCeEEEEc
Q psy2442           4 KVRFLD---PPEITLRPRNQAVKAGGITSFYCIARGDPI--PVIQWRKNGKRVSGT-QSRYMVQEFPP----GGSLLRIE   73 (111)
Q Consensus         4 ~l~v~~---~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~~~~~~~-~~~~~~~~~~~----~~~~l~~~   73 (111)
                      +|.|..   +|.+...+.......|+.+.|.|.+.+.++  +.+.|+++|..+... ..+........    ....|.|.
T Consensus       145 ~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~  224 (254)
T 2c1o_A          145 KLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT  224 (254)
T ss_dssp             EEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEE
T ss_pred             EEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEec
Confidence            455543   455554333223346789999999988443  359999998876532 00000000000    12348888


Q ss_pred             cCCCCCCCeEEEEEeeeCCCc
Q psy2442          74 PVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      .+.. .|.|.|.|.+.|....
T Consensus       225 ~~~~-~d~G~Y~C~a~n~~~~  244 (254)
T 2c1o_A          225 KDEY-ERHNSYTCEATHKTST  244 (254)
T ss_dssp             HHHH-HTCCEEEEEEECTTCS
T ss_pred             cccc-cCCCeEEEEEEcCCCC
Confidence            8887 8999999999997643

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=98.92  E-value=2.9e-08  Score=49.76  Aligned_cols=76  Identities=17%  Similarity=0.412  Sum_probs=52.3

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--ee---c-c--CC---------CCceEEEeCCCCCeEEEEccC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KR---V-S--GT---------QSRYMVQEFPPGGSLLRIEPV   75 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~---~-~--~~---------~~~~~~~~~~~~~~~l~~~~~   75 (111)
                      +.+.+..+.+.+|++++|.|.........+.|++..  ..   + .  ..         ..|+...... .. .|.|.++
T Consensus         4 v~q~p~~~~v~~G~~vtL~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~-~~-~L~I~~~   81 (112)
T 1fo0_B            4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVT-DT-ELRLQVA   81 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEE-TT-EEEEEEE
T ss_pred             EEeCCCeEEEecCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcCC-CC-eEEEcCC
Confidence            345566678899999999999866566789999742  11   1 0  10         0344333222 22 6999999


Q ss_pred             CCCCCCeEEEEEeeeC
Q psy2442          76 RHARDDAVYECVAENG   91 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~   91 (111)
                      +. +|+|.|.|.+.+.
T Consensus        82 ~~-~Dsg~Y~C~~~~~   96 (112)
T 1fo0_B           82 NM-SQGRTLYCTCSAD   96 (112)
T ss_dssp             SC-CSCEEEEEEEESS
T ss_pred             CH-hHCEEEEEEEEcC
Confidence            98 9999999998764

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=98.92  E-value=1.4e-08  Score=50.90  Aligned_cols=75  Identities=16%  Similarity=0.215  Sum_probs=51.9

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCe--e---c-c--C-----CCCceEEEe-CCCCCeEEEEccCCCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK--R---V-S--G-----TQSRYMVQE-FPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~---~-~--~-----~~~~~~~~~-~~~~~~~l~~~~~~~~~   79 (111)
                      .+.+..+.+.+|++++|.|...+.+...+.|++...  .   + .  .     ...|+.... .......|.|.+++. +
T Consensus         4 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~-~   82 (112)
T 2z35_A            4 TQTGGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQE-S   82 (112)
T ss_dssp             ECSCSEEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCS-T
T ss_pred             EeCCCcEEEcCCCCEEEEEEECCCCCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCCCEEEEEECCCCh-h
Confidence            345666788999999999998776667899997531  1   1 0  0     013444431 122234599999998 9


Q ss_pred             CCeEEEEEee
Q psy2442          80 DDAVYECVAE   89 (111)
Q Consensus        80 d~g~y~c~~~   89 (111)
                      |+|.|.|.+.
T Consensus        83 DsG~Y~C~~~   92 (112)
T 2z35_A           83 DSAVYYCALS   92 (112)
T ss_dssp             TCSEEEEEEE
T ss_pred             hCEEEEEEEE
Confidence            9999999987

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=98.92  E-value=1.2e-07  Score=48.34  Aligned_cols=79  Identities=18%  Similarity=0.322  Sum_probs=53.8

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccC--CCeEEEEECC--ee---c-c-------CCCCceEEEeCCCCCeEEEEccC
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KR---V-S-------GTQSRYMVQEFPPGGSLLRIEPV   75 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~---~-~-------~~~~~~~~~~~~~~~~~l~~~~~   75 (111)
                      |.+.+ +..+.+.+|++++|.|...+..  ...+.|++..  ..   + .       ....|+...... ....|.|.++
T Consensus         2 p~v~Q-p~~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~-~~~sL~I~~l   79 (123)
T 3t0v_A            2 PVLTQ-SPSVSGTPGQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSKSG-TSASLAISGL   79 (123)
T ss_dssp             CSBEE-CCCEEECTTCCEEEEEECCTTTTTTSCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEECSC
T ss_pred             CccCc-cCeEEEcCCCCEEEEEecCCCccCCCeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEEccC-CEEEEEECCC
Confidence            44555 4467899999999999987654  3579999742  11   1 0       012455544311 3455999999


Q ss_pred             CCCCCCeEEEEEeeeCC
Q psy2442          76 RHARDDAVYECVAENGV   92 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~~   92 (111)
                      +. +|+|.|.|.+.+..
T Consensus        80 ~~-~DsG~Y~C~~~~~~   95 (123)
T 3t0v_A           80 RS-EDEADYYCLSWDDS   95 (123)
T ss_dssp             CG-GGCEEEEEEEEETT
T ss_pred             CH-HHCEEEEEEEEcCC
Confidence            98 99999999988753

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.92  E-value=9.3e-09  Score=51.81  Aligned_cols=77  Identities=27%  Similarity=0.373  Sum_probs=52.5

Q ss_pred             EEcCcceeeecCCcEEEEEEEecc-CCCeEEEEECC--ee---cc---C--------CCCceEEEeC-CCCCeEEEEccC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNG--KR---VS---G--------TQSRYMVQEF-PPGGSLLRIEPV   75 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~--~~---~~---~--------~~~~~~~~~~-~~~~~~l~~~~~   75 (111)
                      .+.+..+.+.+|++++|.|..... ....+.|++..  ..   +.   .        ...|+..... ......|.|.++
T Consensus         4 ~q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   83 (116)
T 1tvd_A            4 TQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPV   83 (116)
T ss_dssp             ECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSC
T ss_pred             ecCCCcEEEecCCeEEEEeEeEcCCCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCCEEEEEEccC
Confidence            445666789999999999998654 45579998753  11   10   0        0245554321 113345999999


Q ss_pred             CCCCCCeEEEEEeeeC
Q psy2442          76 RHARDDAVYECVAENG   91 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~   91 (111)
                      +. +|+|.|.|.+.+.
T Consensus        84 ~~-~DsG~Y~C~~~~~   98 (116)
T 1tvd_A           84 RT-EDSATYYCAFTLP   98 (116)
T ss_dssp             CG-GGCEEEEEEEECT
T ss_pred             Ch-HHCEEEEEEEeCC
Confidence            98 9999999999873

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=98.92  E-value=2.2e-08  Score=50.99  Aligned_cols=77  Identities=19%  Similarity=0.389  Sum_probs=52.7

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccC--CCeEEEEECC--ee---ccCCCCceEEEe-CCCCCeEEEEccCCCCCCCeEE
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KR---VSGTQSRYMVQE-FPPGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~---~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~d~g~y   84 (111)
                      +.+.+..+.+.+|++++|.|...+..  ...+.|++..  ..   +.....++.... .......|.|.+++. +|+|.|
T Consensus         3 v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~-~DsG~Y   81 (121)
T 2i24_N            3 VDQTPQRITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGSKSFSLRINDLTV-KDSGTY   81 (121)
T ss_dssp             EEEECSEEEEETTCCEEEEEEECSCCCCEEEEEEEEECTTCSCCEEECSBTTEEEEEETTTTEEEEEECSCCG-GGCEEE
T ss_pred             cEECCcEEEEecCCcEEEEeEccCCCCCCCEEEEEEeCCCCCceeeEecCCCeEEEecCCCCEEEEEECCCCh-hhCEEE
Confidence            34556678899999999999987653  3478999853  21   111124554432 122345599999998 999999


Q ss_pred             EEEeee
Q psy2442          85 ECVAEN   90 (111)
Q Consensus        85 ~c~~~~   90 (111)
                      .|.+..
T Consensus        82 ~C~~~~   87 (121)
T 2i24_N           82 RCKPES   87 (121)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            999864

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.91  E-value=1.8e-08  Score=55.42  Aligned_cols=89  Identities=13%  Similarity=0.269  Sum_probs=55.6

Q ss_pred             eEEe---cCCCeeEEcCcceeeecCCcEEEEEEEeccCCC--eEEEEECCeeccCCC-CceEEEeCCCC----CeEEEEc
Q psy2442           4 KVRF---LDPPEITLRPRNQAVKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQ-SRYMVQEFPPG----GSLLRIE   73 (111)
Q Consensus         4 ~l~v---~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~-~~~~~~~~~~~----~~~l~~~   73 (111)
                      .|.|   ..+|.+...+.......|+.+.|.|.+.+.+++  .+.|+++|..+.... ...........    ...|.+.
T Consensus       103 ~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~  182 (213)
T 3r06_A          103 KLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLT  182 (213)
T ss_dssp             EEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEE
T ss_pred             eEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeC
Confidence            4556   456666554444455578889999999886543  799999998875320 00000000001    1236666


Q ss_pred             cCCCCCCCeEEEEEeeeCCC
Q psy2442          74 PVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~   93 (111)
                      .... .|.|.|.|.+.|...
T Consensus       183 ~~~~-~d~g~YtC~v~n~~~  201 (213)
T 3r06_A          183 KADY-ERHNLYTCEVTHKTS  201 (213)
T ss_dssp             HHHH-HTCCEEEEEEEETTC
T ss_pred             HHHh-ccCCeEEEEEEeccc
Confidence            6665 789999999999753

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.91  E-value=1.4e-08  Score=57.18  Aligned_cols=72  Identities=19%  Similarity=0.349  Sum_probs=49.7

Q ss_pred             ceeeecCCcEEEEEEEeccC--CCeEEEEECC--eec------cC----------CCCceEEEeC-CCCCeEEEEccCCC
Q psy2442          19 NQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KRV------SG----------TQSRYMVQEF-PPGGSLLRIEPVRH   77 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~------~~----------~~~~~~~~~~-~~~~~~l~~~~~~~   77 (111)
                      ...+..|++++|.|.+.+.+  .+.+.|++.+  ..+      ..          ...++..... ......|.|.++..
T Consensus       136 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  215 (247)
T 1svz_A          136 PELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKN  215 (247)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCCh
Confidence            34688999999999998864  4689999853  111      00          0234444321 11234699999998


Q ss_pred             CCCCeEEEEEeeeC
Q psy2442          78 ARDDAVYECVAENG   91 (111)
Q Consensus        78 ~~d~g~y~c~~~~~   91 (111)
                       .|+|.|.|.+.|.
T Consensus       216 -~DsG~Y~C~a~n~  228 (247)
T 1svz_A          216 -EDTATYFCVRDRH  228 (247)
T ss_dssp             -GGCEEEEEEEEEG
T ss_pred             -hHCEEEEEEEecc
Confidence             9999999999884

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=98.91  E-value=8.2e-08  Score=48.80  Aligned_cols=77  Identities=19%  Similarity=0.390  Sum_probs=51.7

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--ee---c---cC--------CCCceEEEeCCCCCeEEEEccCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KR---V---SG--------TQSRYMVQEFPPGGSLLRIEPVR   76 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~---~---~~--------~~~~~~~~~~~~~~~~l~~~~~~   76 (111)
                      +.+.+..+.+..|++++|.|... .....+.|++..  ..   +   ..        ...|+...........|.|.+++
T Consensus         4 v~q~p~~v~v~~G~~vtL~C~~~-~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~   82 (121)
T 2oi9_C            4 VTQSPRNKVAVTGEKVTLSCNQT-NNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENFSLTLESAT   82 (121)
T ss_dssp             EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEESSSSCCEEEEEESSTTCCEECSSCTTEEEECCSSSEEEEEESSCC
T ss_pred             eEeCCCeEEecCCCcEEEEEEec-CCCCeEEEEEECCCCCcEEEEEECCCceeeCCccCCCeEEEcCCCCEEEEEECCCC
Confidence            44566778899999999999953 344589998742  11   1   00        02355544312123459999999


Q ss_pred             CCCCCeEEEEEeeeC
Q psy2442          77 HARDDAVYECVAENG   91 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~   91 (111)
                      . +|+|.|.|.+.+.
T Consensus        83 ~-~DsG~Y~C~~~~~   96 (121)
T 2oi9_C           83 P-SQTSVYFCASGGG   96 (121)
T ss_dssp             G-GGCEEEEEEEESS
T ss_pred             H-HHCEEEEEEEccC
Confidence            8 9999999998764

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.91  E-value=4.9e-09  Score=58.19  Aligned_cols=87  Identities=13%  Similarity=0.255  Sum_probs=54.9

Q ss_pred             eEEecC----CCeeEEcCcceeeecCCcEEEEEEEecc-CCC-eEEEEECCeeccCCCCceEEEeCCC---CCeEEEEcc
Q psy2442           4 KVRFLD----PPEITLRPRNQAVKAGGITSFYCIARGD-PIP-VIQWRKNGKRVSGTQSRYMVQEFPP---GGSLLRIEP   74 (111)
Q Consensus         4 ~l~v~~----~p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~   74 (111)
                      +|.|..    +|.+...+....+..|+.++|.|.+.+. |.+ .+.|++++..+...  .......++   ....|.+..
T Consensus       117 ~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~--~~~~~~~~~~~~~~s~L~i~~  194 (222)
T 1q9r_B          117 LVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH--TFPAVLQSDLYTLSSSVTVPS  194 (222)
T ss_dssp             EEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE--EEEEEEETTEEEEEEEEEEET
T ss_pred             EEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCCeEcceE--eccccccCCcEEEEEEEEECc
Confidence            555653    3444433222235679999999999885 777 99999987754311  111100010   112477878


Q ss_pred             CCCCCCCeEEEEEeeeCCCc
Q psy2442          75 VRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~~~~   94 (111)
                      ... .| |.|.|.+.|..+.
T Consensus       195 ~~~-~d-g~y~C~a~n~~~~  212 (222)
T 1q9r_B          195 STW-PS-ETVTCNVAHPASS  212 (222)
T ss_dssp             TTT-TT-SCCEEEEEEGGGT
T ss_pred             hhc-CC-CeEEEEEEccCCC
Confidence            776 78 9999999998765

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=98.91  E-value=9.5e-08  Score=46.94  Aligned_cols=82  Identities=22%  Similarity=0.279  Sum_probs=57.0

Q ss_pred             eeeecCCcEEEEEEEec-cCCCeEEEEECC----eeccCCCCceEEEeCCCCC--eEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          20 QAVKAGGITSFYCIARG-DPIPVIQWRKNG----KRVSGTQSRYMVQEFPPGG--SLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~----~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ..+..|+.+.|.|.+.+ .+.|.+.|-+-+    ..+.   .+.+.....+..  -.|.+.++.. +|+|.|.|.+....
T Consensus        21 hsv~~G~~f~leCpv~yc~~rP~VtWcKln~~~c~~L~---~~~q~w~E~~N~s~fvLhf~~V~~-sDsGsYRCsAn~~s   96 (120)
T 2aw2_A           21 HSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLE---DRQTSWKEEKNISFFILHFEPVLP-NDNGSYRCSANFQS   96 (120)
T ss_dssp             EEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECC---SSCEEEEECSSCEEEEEEESSCCG-GGCEEEEEEEEETT
T ss_pred             ceEecCCeEEEEccEEeccCCCceEEEecCCceEEECc---cccccceecCCeeEEEEEEeeeeE-cCCcceEEEeeCCC
Confidence            46788999999999987 688899998754    2332   122211111111  1488889998 99999999999988


Q ss_pred             CceEeeEEEEEEe
Q psy2442          93 GDAVSAEASLTVY  105 (111)
Q Consensus        93 ~~~~~~~~~l~~~  105 (111)
                      |...+....+.|.
T Consensus        97 g~ieSHsvtI~Vt  109 (120)
T 2aw2_A           97 NLIESHSTTLYVT  109 (120)
T ss_dssp             EEEECCCEEEEEE
T ss_pred             CcEEeeEEEEEEE
Confidence            8655556666554

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=98.91  E-value=4e-08  Score=48.91  Aligned_cols=71  Identities=13%  Similarity=0.236  Sum_probs=48.7

Q ss_pred             eeeecCCcEEEEEEEeccCCC-----eEEEEECCee-c---cC-----------CCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIP-----VIQWRKNGKR-V---SG-----------TQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~-----~~~w~~~~~~-~---~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+..|++++|.|...+.+.+     .+.|++.+.. +   ..           -..+.....   ....|.|.+++. +
T Consensus         4 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~sL~I~~v~~-~   79 (110)
T 1ncn_A            4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDS---DSWTLRLHNLQI-K   79 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEET---TTTEEEECSCCG-G
T ss_pred             EEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEEC---CCEEEEEcCCCh-H
Confidence            567889999999998754433     3899987531 0   00           012333322   234599999998 9


Q ss_pred             CCeEEEEEeeeCCCc
Q psy2442          80 DDAVYECVAENGVGD   94 (111)
Q Consensus        80 d~g~y~c~~~~~~~~   94 (111)
                      |+|.|.|.+.+..+.
T Consensus        80 D~G~Y~C~v~~~~~~   94 (110)
T 1ncn_A           80 DKGLYQCIIHHKKPT   94 (110)
T ss_dssp             GCEEEEEEEEEECSS
T ss_pred             HCEEEEEEEEcCCCC
Confidence            999999999886554

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.91  E-value=2.9e-08  Score=55.63  Aligned_cols=87  Identities=17%  Similarity=0.273  Sum_probs=57.4

Q ss_pred             eeEEecCCC------eeEEcCcceeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceecc----------------CCCC
Q psy2442           3 RKVRFLDPP------EITLRPRNQAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRVS----------------GTQS   56 (111)
Q Consensus         3 ~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~~----------------~~~~   56 (111)
                      +.|.|..++      .....+....+..|+.++|.|.+.+.+  .+.+.|++.  +..+.                ....
T Consensus       106 ~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~  185 (240)
T 1moe_A          106 TKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQG  185 (240)
T ss_dssp             EEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTT
T ss_pred             EEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccc
Confidence            456666542      233445556788999999999998876  358999985  22110                0113


Q ss_pred             ceEEEeC-CCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          57 RYMVQEF-PPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        57 ~~~~~~~-~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      ++..... ......|.|.++.. .|+|.|.|.+.+
T Consensus       186 r~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~~  219 (240)
T 1moe_A          186 KATITADTSSNTAYLQLTSLTS-EDTAVYYCAPFG  219 (240)
T ss_dssp             TEEEEEETTTTEEEEEECSCCG-GGCEEEEEEECS
T ss_pred             cEEEEEcccCCEEEEEECcCCH-HHCEEEEEEEEe
Confidence            4444321 11335599999998 999999999984

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.90  E-value=3.7e-08  Score=55.75  Aligned_cols=72  Identities=26%  Similarity=0.482  Sum_probs=50.3

Q ss_pred             ceeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceec------cC----------CCCceEEEeCC-CCCeEEEEccCCC
Q psy2442          19 NQAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRV------SG----------TQSRYMVQEFP-PGGSLLRIEPVRH   77 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~------~~----------~~~~~~~~~~~-~~~~~l~~~~~~~   77 (111)
                      ...+..|++++|.|.+.+.+  .+.+.|++.  +..+      ..          ...++...... .....|.|.++..
T Consensus       143 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  222 (256)
T 3ux9_B          143 GGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRA  222 (256)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCCh
Confidence            34588999999999998766  678999985  2211      00          11245444321 1334599999998


Q ss_pred             CCCCeEEEEEeeeC
Q psy2442          78 ARDDAVYECVAENG   91 (111)
Q Consensus        78 ~~d~g~y~c~~~~~   91 (111)
                       .|+|.|.|.+.|.
T Consensus       223 -~DsG~Y~C~~~~~  235 (256)
T 3ux9_B          223 -EDTAVYYCARYID  235 (256)
T ss_dssp             -GGCEEEEEEEEET
T ss_pred             -hhCEEEEEEEEcC
Confidence             9999999999985

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.90  E-value=6.2e-09  Score=58.16  Aligned_cols=103  Identities=12%  Similarity=0.161  Sum_probs=54.6

Q ss_pred             eEEecC----CCeeEEcCcceeeecCCcEEEEEEEecc-CCC-eEEEEECCeeccCC-CCceEEEeCC-CCCeEEEEccC
Q psy2442           4 KVRFLD----PPEITLRPRNQAVKAGGITSFYCIARGD-PIP-VIQWRKNGKRVSGT-QSRYMVQEFP-PGGSLLRIEPV   75 (111)
Q Consensus         4 ~l~v~~----~p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~-~~~~~~~~~~-~~~~~l~~~~~   75 (111)
                      +|.|..    +|.+........+..|+.++|.|.+.+. |.+ .+.|++++..+... ..... .... .....|.+...
T Consensus       111 ~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~-~~g~~~~~s~L~i~~~  189 (227)
T 1mju_H          111 LVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVL-QSDLYTLSSSVTVTSS  189 (227)
T ss_dssp             EEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEE-ETTEEEEEEEEEECTT
T ss_pred             EEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECCcee-cCCeEEEEEEEEEchh
Confidence            566654    3444332222245679999999999885 666 89999987654210 01110 0000 01234778777


Q ss_pred             CCCCCCeEEEEEeeeCCCceEeeEEEEEEecCCCC
Q psy2442          76 RHARDDAVYECVAENGVGDAVSAEASLTVYEGEEK  110 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~~~  110 (111)
                      .. .| |.|.|.+.|..+.. .....+.+.++|..
T Consensus       190 ~~-~~-g~Y~C~a~n~~~~~-~~~~~~~~~~~p~~  221 (227)
T 1mju_H          190 TW-PS-QSITCNVAHPASST-KVDKKIEPRGPTIK  221 (227)
T ss_dssp             TT-TT-SCCEEEEEEGGGTE-EEEEECCCCCC---
T ss_pred             hc-CC-CeEEEEEEECCCCc-ceEEEeCCCCCCCC
Confidence            76 66 99999999976542 44445555555543

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=98.43  E-value=1.5e-10  Score=58.00  Aligned_cols=76  Identities=17%  Similarity=0.243  Sum_probs=52.1

Q ss_pred             EcCcceeeecCCcEEEEEEEeccCCCeEEEEECCe--ecc-----------CCCCceEEEeC-CCCCeEEEEccCCCCCC
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK--RVS-----------GTQSRYMVQEF-PPGGSLLRIEPVRHARD   80 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~~-----------~~~~~~~~~~~-~~~~~~l~~~~~~~~~d   80 (111)
                      +.+..+.+.+|++++|.|...+.+.+.+.|++...  .+.           ....|+..... ......|.|.+++. +|
T Consensus         4 Q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~-~D   82 (110)
T 1u3h_A            4 QSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQP-GD   82 (110)
Confidence            44556788899999999998777667899998632  110           11234443321 11223589999998 99


Q ss_pred             CeEEEEEeeeC
Q psy2442          81 DAVYECVAENG   91 (111)
Q Consensus        81 ~g~y~c~~~~~   91 (111)
                      +|.|.|.+.+.
T Consensus        83 sG~Y~C~~~~~   93 (110)
T 1u3h_A           83 SATYFCAASAN   93 (110)
Confidence            99999998764

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.90  E-value=2e-08  Score=57.03  Aligned_cols=79  Identities=18%  Similarity=0.236  Sum_probs=53.4

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEecc-CCCeEEEEECCe--ecc-----------CCCCceEEEeC-CCCCeEEEEccC
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGK--RVS-----------GTQSRYMVQEF-PPGGSLLRIEPV   75 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~--~~~-----------~~~~~~~~~~~-~~~~~~l~~~~~   75 (111)
                      +.+...+..+.+..|++++|.|...+. +.+.+.|++...  .+.           ....++..... ......|.|.++
T Consensus       137 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v  216 (259)
T 3omz_A          137 QKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISAL  216 (259)
T ss_dssp             CEEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSC
T ss_pred             eeeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCC
Confidence            456666777788999999999988764 677999998431  110           00123333210 112234999999


Q ss_pred             CCCCCCeEEEEEeee
Q psy2442          76 RHARDDAVYECVAEN   90 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~   90 (111)
                      .. .|+|.|.|.+.+
T Consensus       217 ~~-~DsG~Y~C~~~~  230 (259)
T 3omz_A          217 QL-EDSAKYFCALGE  230 (259)
T ss_dssp             CG-GGCSEEEEEEES
T ss_pred             Ch-hHCEEEEEEEeC
Confidence            98 999999999974

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.90  E-value=5e-08  Score=56.15  Aligned_cols=79  Identities=19%  Similarity=0.356  Sum_probs=55.1

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccC--CCeEEEEECC--eecc----------------CCCCceEEEeC-CCCCeEEEE
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KRVS----------------GTQSRYMVQEF-PPGGSLLRI   72 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~----------------~~~~~~~~~~~-~~~~~~l~~   72 (111)
                      ...+..+.+..|++++|.|...+.+  .+.+.|++.+  ..+.                ....|+..... ......|.|
T Consensus        30 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I  109 (282)
T 1qok_A           30 LQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQL  109 (282)
T ss_dssp             EEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEE
Confidence            3455567889999999999988764  5689999853  1110                01245554432 112355999


Q ss_pred             ccCCCCCCCeEEEEEeeeCCC
Q psy2442          73 EPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        73 ~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      .++.. .|+|.|.|.+.|..|
T Consensus       110 ~~v~~-~DsG~Y~C~~~n~~g  129 (282)
T 1qok_A          110 SSLTS-EDTAVYYCNEGTPTG  129 (282)
T ss_dssp             CSCCG-GGCEEEEEEEECSSS
T ss_pred             CcCCh-hhCEEEEEEeccCCC
Confidence            99998 999999999998764

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.90  E-value=1e-08  Score=57.21  Aligned_cols=75  Identities=19%  Similarity=0.279  Sum_probs=52.7

Q ss_pred             CcceeeecCCcEEEEEEEeccC-CC-eEEEEECC--eec-----------cCCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP-IP-VIQWRKNG--KRV-----------SGTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~-~~-~~~w~~~~--~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      +..+.+..|++++|.|.+.+.+ .+ .+.|++..  ..+           .....++...... ....|.|.+++. .|+
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~-~D~  103 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSG-TSASLAISGLRS-EDE  103 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEET-TEEEEEEESCCS-TTC
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecC-CeEEEEECCCCH-HHC
Confidence            5667888999999999988754 34 69999853  211           0112355443211 334599999998 999


Q ss_pred             eEEEEEeeeCCC
Q psy2442          82 AVYECVAENGVG   93 (111)
Q Consensus        82 g~y~c~~~~~~~   93 (111)
                      |.|.|.+.|..+
T Consensus       104 G~Y~C~~~~~~~  115 (234)
T 2j6e_L          104 ADYYCATWDDSL  115 (234)
T ss_dssp             SEEEEEEEETTT
T ss_pred             EEEEEEEEcCCc
Confidence            999999998765

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.90  E-value=3.5e-08  Score=55.85  Aligned_cols=74  Identities=15%  Similarity=0.251  Sum_probs=51.9

Q ss_pred             cceeeecCCcEEEEEEEecc--CCCeEEEEECC--eecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442          18 RNQAVKAGGITSFYCIARGD--PIPVIQWRKNG--KRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~--~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      ..+.+.+|++++|.|...+.  +.+.+.|++..  ..+.           ....++...... ....|.|.++.. .|+|
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~-~DsG   87 (256)
T 3ux9_B           10 PSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSG-TSASLAITGLQS-EDEA   87 (256)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET-TEEEEEECSCCG-GGCE
T ss_pred             CcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccC-CEEEEEECCCCh-hhCE
Confidence            34678899999999999876  67789999842  1110           012355443221 334599999998 9999


Q ss_pred             EEEEEeeeCCC
Q psy2442          83 VYECVAENGVG   93 (111)
Q Consensus        83 ~y~c~~~~~~~   93 (111)
                      .|.|.+.+..+
T Consensus        88 ~Y~C~~~~~~~   98 (256)
T 3ux9_B           88 DYYCQVRDNNE   98 (256)
T ss_dssp             EEEEEEEETTT
T ss_pred             EEEEEEEECCC
Confidence            99999988543

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.90  E-value=2.9e-08  Score=58.53  Aligned_cols=87  Identities=22%  Similarity=0.352  Sum_probs=57.3

Q ss_pred             CcceeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceecc----------------CCCCceEEEeCC-CCCeEEEEccC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRVS----------------GTQSRYMVQEFP-PGGSLLRIEPV   75 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~~----------------~~~~~~~~~~~~-~~~~~l~~~~~   75 (111)
                      +..+.+..|+.+.|.|.+.+.+  .+.+.|+++  +..+.                ....|+.+.... .....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (344)
T 1za6_B            7 SGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSL   86 (344)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCC
Confidence            3446788999999999998763  568999986  32210                112455554321 13346999999


Q ss_pred             CCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          76 RHARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      .. .|+|.|.|.+.|..+. ......|.|.
T Consensus        87 ~~-~D~G~Y~C~~~n~~~~-~~~~~~l~V~  114 (344)
T 1za6_B           87 RS-EDTAVYFCTRSLNMAY-WGQGTLVTVS  114 (344)
T ss_dssp             CG-GGCEEEEEEETTTTCE-ECCCEEEEEC
T ss_pred             Cc-ccCEEEEEEEecCcce-ecCcEEEEEe
Confidence            98 9999999999885432 1333445554

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.90  E-value=3.1e-08  Score=55.04  Aligned_cols=90  Identities=13%  Similarity=0.166  Sum_probs=55.9

Q ss_pred             eEEecC----CCeeEEcCcceeeecCCcEEEEEEEecc-CC--CeEEEEECCeeccCCCCceEEEeCCC---CCeEEEEc
Q psy2442           4 KVRFLD----PPEITLRPRNQAVKAGGITSFYCIARGD-PI--PVIQWRKNGKRVSGTQSRYMVQEFPP---GGSLLRIE   73 (111)
Q Consensus         4 ~l~v~~----~p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~--~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~   73 (111)
                      +|.|..    +|.+...+ ...+..|+.++|.|.+.+. |.  +.+.|++++..+......... ..++   ....|.+.
T Consensus       113 ~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~~~-~~~g~~~~~s~L~i~  190 (220)
T 2fbj_H          113 LVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPAL-ASGGRYTMSNQLTLP  190 (220)
T ss_dssp             EEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEE-CSSSCEEEEEEEEEC
T ss_pred             EEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEecCceE-CCCCCEEEEEEEEEC
Confidence            566653    34444333 2345689999999999886 55  589999987654210000000 0010   01237777


Q ss_pred             cCCCCCCCeEEEEEeeeCCCceE
Q psy2442          74 PVRHARDDAVYECVAENGVGDAV   96 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~~~~   96 (111)
                      .... .|.|.|.|.+.|..+...
T Consensus       191 ~~~~-~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          191 AVEC-PEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             GGGS-CTTCEEEEEEEETTSCCE
T ss_pred             HHHc-CCCCeEEEEEEcCCCceE
Confidence            7776 789999999999887643

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=98.89  E-value=8.4e-09  Score=51.63  Aligned_cols=74  Identities=20%  Similarity=0.243  Sum_probs=51.9

Q ss_pred             cCcceeeecCCcEEEEEEEe-ccCCCeEEEEECC--ee---c---c--C--------C-CCceEEEeCCCCCeEEEEccC
Q psy2442          16 RPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNG--KR---V---S--G--------T-QSRYMVQEFPPGGSLLRIEPV   75 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~--~~---~---~--~--------~-~~~~~~~~~~~~~~~l~~~~~   75 (111)
                      .+..+.+.+|++++|.|... +.+...+.|++..  ..   +   .  .        . ..|+...... ....|.|.++
T Consensus         5 ~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~L~I~~~   83 (111)
T 2qhl_A            5 ELHVKTVKRGENVTMECSMSKVKDKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVND-QKFDLNIIGT   83 (111)
T ss_dssp             BCEEEECCTTCCEEECCBCTTCSCGGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESS-SBEEEEESSC
T ss_pred             CCceEEEeCCCCEEEEEEccCCcccceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEEcC-CeEEEEECCC
Confidence            34556788999999999987 6556689998742  11   1   0  0        0 3455554322 3446999999


Q ss_pred             CCCCCCeEEEEEeeeC
Q psy2442          76 RHARDDAVYECVAENG   91 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~   91 (111)
                      +. +|+|.|.|.+.+.
T Consensus        84 ~~-~DsG~Y~C~~~~~   98 (111)
T 2qhl_A           84 RE-DDGGEYFCGEVEG   98 (111)
T ss_dssp             CG-GGCEEEEEEEEET
T ss_pred             Ch-hHCEEEEEEEccC
Confidence            98 9999999998874

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.89  E-value=4.4e-08  Score=53.65  Aligned_cols=88  Identities=18%  Similarity=0.244  Sum_probs=56.0

Q ss_pred             cCcceeeecCCcEEEEEEEeccCCC---eEEEEECCeeccCC-----------------CCceEEEeC--CCCCeEEEEc
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDPIP---VIQWRKNGKRVSGT-----------------QSRYMVQEF--PPGGSLLRIE   73 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~~~-----------------~~~~~~~~~--~~~~~~l~~~   73 (111)
                      .+..+.+..|+++.|.|.+.+.+.+   .+.|++.+......                 ..++.....  ......|.|.
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            4556788999999999999887765   37899876543210                 011111110  0012348999


Q ss_pred             cCCCCCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442          74 PVRHARDDAVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      ++.. .|+|.|.|.+.+..+........+.+
T Consensus        85 ~v~~-~D~G~Y~C~~~~~~~~~~~~~~~~~~  114 (218)
T 4frw_A           85 NAVQ-ADEGEYECRVSTFPAGSFQARLRLRV  114 (218)
T ss_dssp             SCCG-GGCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eccH-HHCCceeEEEEeccCceeeeEEEEEE
Confidence            9998 99999999988765543233333333

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.89  E-value=1.4e-08  Score=57.32  Aligned_cols=75  Identities=17%  Similarity=0.329  Sum_probs=51.7

Q ss_pred             EcCcceeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceecc----------------CCCCceEEEeCC-CCCeEEEEc
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRVS----------------GTQSRYMVQEFP-PGGSLLRIE   73 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~~----------------~~~~~~~~~~~~-~~~~~l~~~   73 (111)
                      ..+....+..|++++|.|.+.+.+  .+.+.|+++  +..+.                ....++...... .....|.|.
T Consensus       136 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~  215 (250)
T 3esu_F          136 QQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLS  215 (250)
T ss_dssp             EECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             ecCCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEEC
Confidence            344556788999999999998766  678999986  33221                001344443211 123359999


Q ss_pred             cCCCCCCCeEEEEEeee
Q psy2442          74 PVRHARDDAVYECVAEN   90 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~   90 (111)
                      ++.. .|+|.|.|.+.+
T Consensus       216 ~v~~-~DsG~Y~C~~~~  231 (250)
T 3esu_F          216 SLTS-VDSAVYFCARSG  231 (250)
T ss_dssp             SCCG-GGCEEEEEEEEC
T ss_pred             CCCc-ccCEEEEEEEec
Confidence            9998 999999999986

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.89  E-value=5.1e-08  Score=55.42  Aligned_cols=78  Identities=13%  Similarity=0.246  Sum_probs=54.9

Q ss_pred             eeecCCcEEEEEEEec-cCCC--eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccC---CCCCCCeE--EEEEeeeCC
Q psy2442          21 AVKAGGITSFYCIARG-DPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPV---RHARDDAV--YECVAENGV   92 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~-~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~d~g~--y~c~~~~~~   92 (111)
                      .+..|+.+.|.|.+.+ .|.+  .+.|++++..+..   ..  ..   ....+.+..+   .. .|.|.  |.|.+.|..
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~---~~--~~---~~~~~~~~~~~~~~~-~d~g~g~Y~C~a~n~~   84 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP---TV--TY---GNDSFSAKASVSVTA-EDEGTQRLTCAVILGN   84 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC---EE--EE---CSSEEEEEEEEEECG-GGCEEEEEEEEEEETT
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc---eE--ee---CCCeEEEEeeccccc-ccCCcceEEEEEecCC
Confidence            5789999999999988 6666  8999999988753   11  11   1222444333   55 77775  999999988


Q ss_pred             CceEeeEEEEEEecCC
Q psy2442          93 GDAVSAEASLTVYEGE  108 (111)
Q Consensus        93 ~~~~~~~~~l~~~~~~  108 (111)
                      +.. .....|.+...|
T Consensus        85 ~~~-~~~~~l~V~~~p   99 (265)
T 2oz4_A           85 QSQ-ETLQTVTIYSFP   99 (265)
T ss_dssp             EEE-EEEEEEEEECCC
T ss_pred             CCc-EEEEEEEEeCCC
Confidence            763 667777776543

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.89  E-value=4.5e-08  Score=54.15  Aligned_cols=75  Identities=21%  Similarity=0.333  Sum_probs=52.4

Q ss_pred             CcceeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceecc----------------CCCCceEEEeCC-CCCeEEEEccC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRVS----------------GTQSRYMVQEFP-PGGSLLRIEPV   75 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~~----------------~~~~~~~~~~~~-~~~~~l~~~~~   75 (111)
                      +..+.+..|+++.|.|.+.+.+  .+.+.|++.  +..+.                ....|+...... .....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL   86 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence            4456788999999999998764  568999986  32210                012355443211 12345999999


Q ss_pred             CCCCCCeEEEEEeeeCC
Q psy2442          76 RHARDDAVYECVAENGV   92 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~~   92 (111)
                      .. .|+|.|.|.+.+..
T Consensus        87 ~~-~D~G~Y~C~~~~~~  102 (219)
T 1c1e_H           87 KN-EDMATYFCARGTTI  102 (219)
T ss_dssp             CG-GGCEEEEEEEEETT
T ss_pred             Cc-ccCEEEEEEEeccC
Confidence            98 99999999999875

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.89  E-value=8.9e-09  Score=51.06  Aligned_cols=84  Identities=19%  Similarity=0.139  Sum_probs=53.3

Q ss_pred             eeeecCCcEEEEEEEeccCCC---eEEEEECCeec----------cC------CCCceEEEeC-CCCCeEEEEccCCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIP---VIQWRKNGKRV----------SG------TQSRYMVQEF-PPGGSLLRIEPVRHAR   79 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~----------~~------~~~~~~~~~~-~~~~~~l~~~~~~~~~   79 (111)
                      +.+..|++++|.|...+.+..   .+.|++.....          ..      ...++.+... ......|.|.+++. .
T Consensus         4 v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~-~   82 (109)
T 2oyp_A            4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTL-D   82 (109)
T ss_dssp             EEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCG-G
T ss_pred             EEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCC-h
Confidence            567889999999998765432   48999864320          00      1133333211 01223599999998 9


Q ss_pred             CCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          80 DDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        80 d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      |+|.|.|.+.+..+.. ...+.|.|.
T Consensus        83 D~G~Y~C~v~~~~~~~-~~~~~l~V~  107 (109)
T 2oyp_A           83 DHGTYCCRIQFPGLMN-DKKLELKLD  107 (109)
T ss_dssp             GCEEEEEEECCSSTTC-CEEEEEEEE
T ss_pred             hCeEEEEEEEcCCccc-ceEEEEEEE
Confidence            9999999999876542 445555443

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.89  E-value=3.4e-08  Score=55.59  Aligned_cols=73  Identities=21%  Similarity=0.430  Sum_probs=51.9

Q ss_pred             cceeeecCCcEEEEEEEeccC--CCeEEEEECC--eec----------------cCCCCceEEEeC-CCCCeEEEEccCC
Q psy2442          18 RNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KRV----------------SGTQSRYMVQEF-PPGGSLLRIEPVR   76 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~----------------~~~~~~~~~~~~-~~~~~~l~~~~~~   76 (111)
                      ..+.+..|++++|.|.+.+.+  .+.+.|++..  ..+                .....++..... ......|.|.++.
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   89 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCC
Confidence            346888999999999998876  5689999842  110                011245555432 1123459999999


Q ss_pred             CCCCCeEEEEEeeeC
Q psy2442          77 HARDDAVYECVAENG   91 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~   91 (111)
                      . .|+|.|.|.+.|.
T Consensus        90 ~-~D~G~Y~C~~~n~  103 (247)
T 2ghw_B           90 A-EDTAVYYCARDRS  103 (247)
T ss_dssp             G-GGCEEEEEEEEET
T ss_pred             H-HHCEEEEEeeecc
Confidence            8 9999999999987

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=98.88  E-value=7e-08  Score=48.53  Aligned_cols=72  Identities=17%  Similarity=0.323  Sum_probs=48.3

Q ss_pred             ceeeecCCcEEEEEEEecc---CCCeEEEEECC--ee---c-c-----------CCCCceEEEeCCC-CCeEEEEccCCC
Q psy2442          19 NQAVKAGGITSFYCIARGD---PIPVIQWRKNG--KR---V-S-----------GTQSRYMVQEFPP-GGSLLRIEPVRH   77 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~---~~~~~~w~~~~--~~---~-~-----------~~~~~~~~~~~~~-~~~~l~~~~~~~   77 (111)
                      .+.+.+|++++|.|.....   ....+.|++..  ..   + .           ....|+....... ....|.|.+++.
T Consensus         7 ~~~~~~G~~v~L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~   86 (116)
T 3bj9_1            7 AMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQP   86 (116)
T ss_dssp             EEEEETTCCEEEEEEECSSSCGGGCCEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             cEEEcCCCcEEEEEEeecCccCCCceEEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEecCCCceEEEEECCCCh
Confidence            4788899999999998653   34579998742  11   1 0           0123454432210 122599999998


Q ss_pred             CCCCeEEEEEeeeC
Q psy2442          78 ARDDAVYECVAENG   91 (111)
Q Consensus        78 ~~d~g~y~c~~~~~   91 (111)
                       +|+|.|.|.+.+.
T Consensus        87 -~DsG~Y~C~~~~~   99 (116)
T 3bj9_1           87 -EDEAMYYCAMGAR   99 (116)
T ss_dssp             -GGCEEEEEEECCS
T ss_pred             -hHCEEEEEEEeCC
Confidence             9999999998764

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=98.88  E-value=2.2e-08  Score=49.78  Aligned_cols=97  Identities=16%  Similarity=0.253  Sum_probs=60.7

Q ss_pred             ecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEE
Q psy2442           7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYEC   86 (111)
Q Consensus         7 v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c   86 (111)
                      ...+|.+...+.. .+..|+.++|.|..... ...+.|+++|.....................|.|..+.. .|+|.|.|
T Consensus         6 ~~pkPsL~a~P~~-vv~~G~~VtL~C~~~~~-~~~f~l~k~g~~~~~~~~~~~~~~~~~~~~~f~i~~vt~-~~aG~Y~C   82 (106)
T 3kgr_A            6 DLPRPSISAEPGT-VIPLGSHVTFVCRGPVG-VQTFRLERESRSTYNDTEDVSQASPSESEARFRIDSVSE-GNAGPYRC   82 (106)
T ss_dssp             CCCCCEEEEESCS-EEETTCCEEEEEEECTT-CCEEEEEEGGGTEEEEECCCEEEETTEEEEEEEESSCCG-GGCEEEEE
T ss_pred             CCCCCEEEEeCCC-ccCCCCeEEEEEEccCC-CcEEEEEECCCccccccccccccCCCCcceEEEecCCCc-CCCceEEE
Confidence            3456777666654 77899999999987543 347889998764310000001100000234588999998 99999999


Q ss_pred             EeeeCCC-ceEeeEEEEEEec
Q psy2442          87 VAENGVG-DAVSAEASLTVYE  106 (111)
Q Consensus        87 ~~~~~~~-~~~~~~~~l~~~~  106 (111)
                      ...+..+ ...+..+.|.|.+
T Consensus        83 ~~~~~~~~S~~Sdpl~L~Vtg  103 (106)
T 3kgr_A           83 IYYKPPKWSEQSDYLELLVKE  103 (106)
T ss_dssp             EEEETTEECCCCCCEEEEEEC
T ss_pred             EeeCCCcccCCCCCEEEEEeC
Confidence            9887532 2235667777654

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.88  E-value=1.2e-07  Score=52.75  Aligned_cols=75  Identities=20%  Similarity=0.314  Sum_probs=52.6

Q ss_pred             cceeeecCCcEEEEEEEeccC--CCeEEEEECC--eecc----------------CCCCceEEEeCC-CCCeEEEEccCC
Q psy2442          18 RNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KRVS----------------GTQSRYMVQEFP-PGGSLLRIEPVR   76 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~----------------~~~~~~~~~~~~-~~~~~l~~~~~~   76 (111)
                      ..+.+..|++++|.|...+.+  .+.+.|++..  ..+.                ....|+...... .....|.|.++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (225)
T 1op3_H            8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (225)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCC
Confidence            346788999999999998765  5689999742  2110                112455554321 123459999999


Q ss_pred             CCCCCeEEEEEeeeCCC
Q psy2442          77 HARDDAVYECVAENGVG   93 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~   93 (111)
                      . .|+|.|.|.+.+..+
T Consensus        88 ~-~D~G~Y~C~~~~~~~  103 (225)
T 1op3_H           88 V-EDTAIYYCARKGSDR  103 (225)
T ss_dssp             G-GGCEEEEEEEECCSS
T ss_pred             h-hhCEEEEEEEecCCC
Confidence            8 999999999998653

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.88  E-value=9.8e-08  Score=53.60  Aligned_cols=76  Identities=20%  Similarity=0.358  Sum_probs=52.9

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--eecc--------------CCCCceEEEeCCCCCeEEEEccCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KRVS--------------GTQSRYMVQEFPPGGSLLRIEPVRH   77 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~   77 (111)
                      .+.+..+.+..|++++|.|... .+.+.+.|++..  ..+.              ....|+...........|.|.+++.
T Consensus         3 ~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~   81 (238)
T 1bec_A            3 TQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATP   81 (238)
T ss_dssp             EEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCG
T ss_pred             ccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCc
Confidence            4456667899999999999984 356789999853  1110              0124554442111334699999998


Q ss_pred             CCCCeEEEEEeeeC
Q psy2442          78 ARDDAVYECVAENG   91 (111)
Q Consensus        78 ~~d~g~y~c~~~~~   91 (111)
                       .|+|.|.|.+.+.
T Consensus        82 -~D~G~Y~C~~~~~   94 (238)
T 1bec_A           82 -SQTSVYFCASGGG   94 (238)
T ss_dssp             -GGCEEEEEEEESC
T ss_pred             -ccCEEEEEEEecC
Confidence             9999999999886

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R

Probab=98.88  E-value=3.9e-08  Score=50.54  Aligned_cols=80  Identities=14%  Similarity=0.334  Sum_probs=55.6

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Cee------c---cC---------C---CCceEE-EeCC
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKR------V---SG---------T---QSRYMV-QEFP   64 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~------~---~~---------~---~~~~~~-~~~~   64 (111)
                      .++.+.+.+..+.+.+|++++|.|...+.....+.|++.  +..      +   ..         .   ..++.. ....
T Consensus         3 ~~~~v~Q~p~~~~v~~G~~vtL~C~~s~~~~~~v~WyrQ~~g~~l~~p~~l~~~~~~~~~~~~~~~~~~~~rfs~~~~~~   82 (128)
T 1nez_G            3 QAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTN   82 (128)
T ss_dssp             -CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETT
T ss_pred             cCCeeEECCCeEEEcCCCCEEEEEEeCccCCCcEEEEEeCCCCCCCCcEEEEEEecccCCceeeccccCCCcEEEEeCCC
Confidence            356677778888899999999999987655567999873  221      1   01         0   134544 3322


Q ss_pred             CCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          65 PGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        65 ~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                       ....|.|..++. +|+|.|.|.+..
T Consensus        83 -~~~~L~I~~~~~-~Dsg~YyCa~~~  106 (128)
T 1nez_G           83 -NKYVLTLNKFSK-ENEGYYFCSVIS  106 (128)
T ss_dssp             -TEEEEEESSCCG-GGCEEEEEEEEE
T ss_pred             -CEEEEEECCCCH-HHCEEEEEEEcC
Confidence             334599999998 999999999865

>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A

Probab=98.88  E-value=5.3e-08  Score=49.17  Aligned_cols=78  Identities=18%  Similarity=0.302  Sum_probs=53.8

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccC-CCeEEEEEC--Ceec------------cCCCCceEEEeC-CCCCeEEEEccCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRKN--GKRV------------SGTQSRYMVQEF-PPGGSLLRIEPVRH   77 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~--~~~~------------~~~~~~~~~~~~-~~~~~~l~~~~~~~   77 (111)
                      .+.+..+.+.+|++++|.|...... ...+.|++.  +..+            .....|+..... ......|.|.+++.
T Consensus         3 ~q~p~~~~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~   82 (117)
T 3bp6_A            3 TFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRR   82 (117)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCG
T ss_pred             eecCCcEEEeCCCCEEEEeEeecCCCCCEEEEEEeCCCCCceEEEEECCCCccccccCcEEEEEcCCCCEEEEEECcCCH
Confidence            4556667899999999999987643 458999974  2211            011346655432 22334599999998


Q ss_pred             CCCCeEEEEEeeeCC
Q psy2442          78 ARDDAVYECVAENGV   92 (111)
Q Consensus        78 ~~d~g~y~c~~~~~~   92 (111)
                       +|+|.|.|.+.+..
T Consensus        83 -~Dsg~Y~C~~~~~~   96 (117)
T 3bp6_A           83 -NDSGIYLCGAISLH   96 (117)
T ss_dssp             -GGCEEEEEEEEECS
T ss_pred             -HHCEEEEEEEEecC
Confidence             99999999988743

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.87  E-value=4.2e-08  Score=52.79  Aligned_cols=75  Identities=12%  Similarity=0.146  Sum_probs=51.1

Q ss_pred             eeeecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442          20 QAVKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS   97 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~   97 (111)
                      ..+.+|+.+.|.|.+.+.+.+  .+.|++++..+.... ...      ....|.+.  .. .|.|.|.|.+.|..    .
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~-~~~------~~~~l~i~--~~-~d~G~Y~C~~~n~~----~   73 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA-LPG------QKTEFKVD--SD-DQWGEYSCVFLPEP----M   73 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTT-CCC------SEEEEEEC--GG-GCCEEEEEEEESTT----S
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccc-ccC------CcEEEEEe--ch-hhCeEEEEEEECCc----C
Confidence            356789999999999887776  899999988775431 100      12235444  45 89999999999832    2


Q ss_pred             eEEEEEEecCC
Q psy2442          98 AEASLTVYEGE  108 (111)
Q Consensus        98 ~~~~l~~~~~~  108 (111)
                      ....+.|..+|
T Consensus        74 ~~~~l~V~~~P   84 (184)
T 3b5h_A           74 GTANIQLHGPP   84 (184)
T ss_dssp             CEEEEEECCSC
T ss_pred             cEEEEEEecCC
Confidence            34455555544

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.87  E-value=1e-07  Score=54.38  Aligned_cols=79  Identities=19%  Similarity=0.344  Sum_probs=53.8

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----CC---------CC-ceEEEeCCCCCeEEEEc
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----GT---------QS-RYMVQEFPPGGSLLRIE   73 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----~~---------~~-~~~~~~~~~~~~~l~~~   73 (111)
                      ..+...+..+.+..|++++|.|...+ +.+.+.|++.  +....     ..         .. ++...........|.|.
T Consensus        28 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~  106 (270)
T 3qib_D           28 MKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQ  106 (270)
T ss_dssp             CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEES
T ss_pred             eeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEEC
Confidence            34556677788999999999999765 6678999982  11100     00         00 44444322234569999


Q ss_pred             cCCCCCCCeEEEEEeeeC
Q psy2442          74 PVRHARDDAVYECVAENG   91 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~   91 (111)
                      +++. .|+|.|.|.+.+.
T Consensus       107 ~v~~-~D~G~Y~C~~~~~  123 (270)
T 3qib_D          107 SSEA-GDSALYLCASSLN  123 (270)
T ss_dssp             SCCG-GGCEEEEEEEESC
T ss_pred             CCCH-hHCeEEEEEEecC
Confidence            9998 9999999999863

>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=98.87  E-value=7e-08  Score=50.90  Aligned_cols=80  Identities=18%  Similarity=0.331  Sum_probs=54.3

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEecc-CCCeEEEEEC-----Ceecc--------------C--CCCceEEEe-CCCCC
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKN-----GKRVS--------------G--TQSRYMVQE-FPPGG   67 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~-----~~~~~--------------~--~~~~~~~~~-~~~~~   67 (111)
                      +.+.+.+..+.+.+|++++|.|...+. ....+.|++.     +..+.              .  ...|+.+.. .....
T Consensus         2 ~~v~Q~p~~~~v~~G~svtL~C~~s~~~~~~~v~Wyrq~~g~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~   81 (150)
T 3dmm_D            2 SALIQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRR   81 (150)
T ss_dssp             --CEEECSEEEEETTSCEEEEEECCCSSCCCEEEEEEEECCSSCCEEEEEEEEETTTEEEECTTTTTTCCEEEESTTSSS
T ss_pred             CccEECCCeEEEeCCCcEEEEEEecCCCCCceEEEEEeCCCCCCCccEEEEEEecCCceEeCCCCccCcEEEEEcCCCCE
Confidence            345566777889999999999998764 4558999975     21110              0  124555542 22234


Q ss_pred             eEEEEccCCCCCCCeEEEEEeeeC
Q psy2442          68 SLLRIEPVRHARDDAVYECVAENG   91 (111)
Q Consensus        68 ~~l~~~~~~~~~d~g~y~c~~~~~   91 (111)
                      ..|.|.+++. +|+|.|.|.+...
T Consensus        82 ~sL~I~~l~~-~Dsg~Y~C~~~~~  104 (150)
T 3dmm_D           82 PFLSIMNVKP-EDSDFYFCATVGS  104 (150)
T ss_dssp             CEEEESSCCG-GGCEEEEEEEECS
T ss_pred             EEEEECCCCh-hhCEEEEEEEecC
Confidence            5599999998 9999999998753

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=98.87  E-value=8e-08  Score=48.30  Aligned_cols=74  Identities=18%  Similarity=0.349  Sum_probs=51.2

Q ss_pred             CcceeeecCCcEEEEEEEecc-CCCeEEEEEC--Cee---c---cC---------CCCceEEEeCCCCCeEEEEccCCCC
Q psy2442          17 PRNQAVKAGGITSFYCIARGD-PIPVIQWRKN--GKR---V---SG---------TQSRYMVQEFPPGGSLLRIEPVRHA   78 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~--~~~---~---~~---------~~~~~~~~~~~~~~~~l~~~~~~~~   78 (111)
                      +..+.+.+|++++|.|...+. +...+.|++.  +..   +   ..         -..|+...... ....|.|.+++. 
T Consensus         8 p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~L~I~~~~~-   85 (115)
T 2otu_A            8 SSSASFSLGASAKLTCTLSSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSG-ADRYLSISNIQP-   85 (115)
T ss_dssp             CCCEECCTTCCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEEET-TEEEEEESSCCG-
T ss_pred             CCCEEECCCCCEEEEEEecCCCCCeEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEccC-CEEEEEECCCCh-
Confidence            556788999999999998765 4568999873  211   1   10         02355444321 334599999998 


Q ss_pred             CCCeEEEEEeeeCC
Q psy2442          79 RDDAVYECVAENGV   92 (111)
Q Consensus        79 ~d~g~y~c~~~~~~   92 (111)
                      +|+|.|.|.+.+..
T Consensus        86 ~Dsg~Y~C~~~~~~   99 (115)
T 2otu_A           86 EDEAIYICGVGDTI   99 (115)
T ss_dssp             GGCEEEEEEEEECC
T ss_pred             hHCEEEEEEEecCC
Confidence            99999999987753

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.87  E-value=3.1e-08  Score=56.22  Aligned_cols=75  Identities=19%  Similarity=0.333  Sum_probs=52.7

Q ss_pred             cceeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceecc---------------CCCCceEEEeC-CCCCeEEEEccCCC
Q psy2442          18 RNQAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRVS---------------GTQSRYMVQEF-PPGGSLLRIEPVRH   77 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~~---------------~~~~~~~~~~~-~~~~~~l~~~~~~~   77 (111)
                      ..+.+..|++++|.|.+.+.+  .+.+.|++.  +..+.               ....|+..... ......|.|.++..
T Consensus         8 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (257)
T 1f3r_B            8 GPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQT   87 (257)
T ss_dssp             CCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCT
T ss_pred             CCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCc
Confidence            345788999999999998875  578999985  21110               01245555432 11334699999998


Q ss_pred             CCCCeEEEEEeeeCCC
Q psy2442          78 ARDDAVYECVAENGVG   93 (111)
Q Consensus        78 ~~d~g~y~c~~~~~~~   93 (111)
                       .|+|.|.|.+.|..|
T Consensus        88 -~DsG~Y~C~a~n~~g  102 (257)
T 1f3r_B           88 -DDTGTYYCTRDLYGG  102 (257)
T ss_dssp             -TCCEEEEEEEESSSS
T ss_pred             -ccCEEEEEEEccccc
Confidence             999999999998743

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.87  E-value=4.9e-08  Score=55.75  Aligned_cols=71  Identities=21%  Similarity=0.400  Sum_probs=49.5

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEECC--eecc------C----------CCCceEEEe-CCCCCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKNG--KRVS------G----------TQSRYMVQE-FPPGGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~~~~------~----------~~~~~~~~~-~~~~~~~l~~~~~~~~   78 (111)
                      ..+..|++++|.|.+.+.+.  +.+.|++..  ..+.      .          ...++.+.. .......|.|.++.. 
T Consensus       148 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-  226 (264)
T 2gjj_A          148 EVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTS-  226 (264)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             EEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCc-
Confidence            46889999999999987763  689999863  2110      0          013444332 111335699999998 


Q ss_pred             CCCeEEEEEeeeC
Q psy2442          79 RDDAVYECVAENG   91 (111)
Q Consensus        79 ~d~g~y~c~~~~~   91 (111)
                      .|+|.|.|.+.|.
T Consensus       227 ~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          227 EDSADYYCVRSGN  239 (264)
T ss_dssp             GGCEEEEEEEECS
T ss_pred             ccCEEEEEEEecC
Confidence            9999999999984

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.86  E-value=1.5e-07  Score=52.25  Aligned_cols=75  Identities=21%  Similarity=0.411  Sum_probs=52.3

Q ss_pred             cceeeecCCcEEEEEEEeccC--CCeEEEEECC--ee---cc-------------CCCCceEEEeCC-CCCeEEEEccCC
Q psy2442          18 RNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KR---VS-------------GTQSRYMVQEFP-PGGSLLRIEPVR   76 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~---~~-------------~~~~~~~~~~~~-~~~~~l~~~~~~   76 (111)
                      ..+.+..|++++|.|...+.+  .+.+.|++..  ..   +.             ....|+...... .....|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (220)
T 2fbj_H            8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence            346888999999999998754  5689998742  11   10             012466555321 123469999999


Q ss_pred             CCCCCeEEEEEeeeCCC
Q psy2442          77 HARDDAVYECVAENGVG   93 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~   93 (111)
                      . .|+|.|.|.+.+..+
T Consensus        88 ~-~DsG~Y~C~~~~~~~  103 (220)
T 2fbj_H           88 S-EDTALYYCARLHYYG  103 (220)
T ss_dssp             G-GGCEEEEEEEEETTT
T ss_pred             h-hhCEEEEEEEecccc
Confidence            8 999999999988643

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.86  E-value=8.9e-09  Score=56.99  Aligned_cols=89  Identities=12%  Similarity=0.236  Sum_probs=52.9

Q ss_pred             eEEecCC----CeeEEcCcceeeecCCcEEEEEEEec-cCCC-eEEEEECCeeccCCCCceEEEeCC-CCCeEEEEccCC
Q psy2442           4 KVRFLDP----PEITLRPRNQAVKAGGITSFYCIARG-DPIP-VIQWRKNGKRVSGTQSRYMVQEFP-PGGSLLRIEPVR   76 (111)
Q Consensus         4 ~l~v~~~----p~~~~~~~~~~~~~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~   76 (111)
                      +|.|...    |.+...+....+..|+.+.|.|.+.+ .|.| .+.|++++..+............. .....|.+.. .
T Consensus       114 ~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~-~  192 (219)
T 1c1e_H          114 SLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPS-S  192 (219)
T ss_dssp             EEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEES-S
T ss_pred             EEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEec-c
Confidence            5566543    44443332234568999999999998 7888 999999887542100000000000 0112367743 3


Q ss_pred             CCCCCeEEEEEeeeCCCc
Q psy2442          77 HARDDAVYECVAENGVGD   94 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~~   94 (111)
                      . .|.|.|.|.+.|..+.
T Consensus       193 ~-~d~g~Y~C~a~n~~~~  209 (219)
T 1c1e_H          193 P-RPSETVTCNVAHPASS  209 (219)
T ss_dssp             S-TTTSCCEEEEEEGGGT
T ss_pred             c-CCCCEEEEEEEeCCCC
Confidence            3 4669999999997764

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.86  E-value=7.1e-08  Score=54.81  Aligned_cols=77  Identities=22%  Similarity=0.405  Sum_probs=53.8

Q ss_pred             cCcceeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceecc----------------CCCCceEEEeC-CCCCeEEEEcc
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRVS----------------GTQSRYMVQEF-PPGGSLLRIEP   74 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~~----------------~~~~~~~~~~~-~~~~~~l~~~~   74 (111)
                      .+..+.+..|++++|.|.+.+.+  .+.+.|++.  +..+.                ....|+..... ......|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (256)
T 1nqb_A            6 QSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSS   85 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECc
Confidence            34456888999999999998764  568999984  22110                01245554432 11334699999


Q ss_pred             CCCCCCCeEEEEEeeeCCC
Q psy2442          75 VRHARDDAVYECVAENGVG   93 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~~~   93 (111)
                      +.. .|+|.|.|.+.|..|
T Consensus        86 v~~-~DsG~Y~C~~~n~~g  103 (256)
T 1nqb_A           86 LTS-EDSAVYYCARYDYYG  103 (256)
T ss_dssp             CCG-GGCEEEEEEECCTTS
T ss_pred             CCh-hhCEEEEEEEeeccC
Confidence            998 999999999998754

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.86  E-value=4.7e-08  Score=56.82  Aligned_cols=94  Identities=17%  Similarity=0.221  Sum_probs=58.7

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCC-----eEEEEECCeecc------------CCCCceEEEeCC----CCCeEEEE
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIP-----VIQWRKNGKRVS------------GTQSRYMVQEFP----PGGSLLRI   72 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~-----~~~w~~~~~~~~------------~~~~~~~~~~~~----~~~~~l~~   72 (111)
                      ...|..+.+..|++++|.|.+.+.+.+     .+.|++++....            ....++......    .....|.|
T Consensus         4 v~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I   83 (313)
T 4fqp_A            4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRM   83 (313)
T ss_dssp             EECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEE
T ss_pred             EcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEE
Confidence            345566778899999999999876655     388999865321            111222221110    01234999


Q ss_pred             ccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          73 EPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        73 ~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .++.. .|+|.|.|.+.+..+......+.|.+...|
T Consensus        84 ~~v~~-~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P  118 (313)
T 4fqp_A           84 FGLRV-EDEGNYTCLFVTFPQGSRSVDIWLRVLAKP  118 (313)
T ss_dssp             CSCCG-GGCEEEEEEEECSSSCEEEEEEEECCBBCC
T ss_pred             CcCCh-hhCEEEEEEEeeccCcceeeeeeeeeccCC
Confidence            99998 999999998865433223555555554443

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=98.85  E-value=2e-07  Score=47.45  Aligned_cols=77  Identities=18%  Similarity=0.224  Sum_probs=51.9

Q ss_pred             EcCcceeeecCCcEEEEEEEeccC--CCeEEEEECCe-----e-cc-------CCCCceEEEe-CCCCCeEEEEccCCCC
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDP--IPVIQWRKNGK-----R-VS-------GTQSRYMVQE-FPPGGSLLRIEPVRHA   78 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~-----~-~~-------~~~~~~~~~~-~~~~~~~l~~~~~~~~   78 (111)
                      ..+..+.+.+|++++|.|......  ...+.|++...     . +.       ....|+.+.. .......|.|.+++. 
T Consensus        15 ~~~~~v~~~~G~svtL~C~~s~~~~~~~~v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~-   93 (122)
T 1hkf_A           15 SKAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLRE-   93 (122)
T ss_dssp             CCCEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             cCCceEEEecCCCEEEEeEccCCCCcccEEEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEEcCcCCEEEEEEeCCCH-
Confidence            445557888999999999976532  24789987531     1 11       1124665532 222334599999998 


Q ss_pred             CCCeEEEEEeeeCC
Q psy2442          79 RDDAVYECVAENGV   92 (111)
Q Consensus        79 ~d~g~y~c~~~~~~   92 (111)
                      +|+|.|.|.+....
T Consensus        94 ~Dsg~Y~C~v~~~~  107 (122)
T 1hkf_A           94 EDSGHYWCRIYRPS  107 (122)
T ss_dssp             GGCEEEEEEEECTT
T ss_pred             HHCEEEEEEEEcCC
Confidence            99999999988754

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.85  E-value=2.7e-08  Score=57.59  Aligned_cols=88  Identities=18%  Similarity=0.274  Sum_probs=54.6

Q ss_pred             ceeeecCCcEEEEEEEeccC-CCeEEEEECCeecc----------------CCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442          19 NQAVKAGGITSFYCIARGDP-IPVIQWRKNGKRVS----------------GTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      .+.+..|++++|.|.+.+.+ .+.+.|++.+....                ....++...........|.|.++.. .|+
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-~D~   86 (308)
T 4fom_A            8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGF-SDS   86 (308)
T ss_dssp             SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCG-GGC
T ss_pred             EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCH-HHC
Confidence            46788999999999876543 34689998543211                0012222221111224499999998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      |.|.|.+.|..+........+.+...
T Consensus        87 G~Y~C~a~n~~~~~~~~~~~~~v~~~  112 (308)
T 4fom_A           87 GKYICKAVTFPLGNAQSSTTVTVLVE  112 (308)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEBC
T ss_pred             EEEEEEEeeCCCcceeeeeEEEeeec
Confidence            99999998864332355555555443

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.85  E-value=6.5e-08  Score=54.72  Aligned_cols=90  Identities=19%  Similarity=0.219  Sum_probs=57.2

Q ss_pred             EcCcceeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceec----------------cCCCCceEEEeCC-CCCeEEEEc
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRV----------------SGTQSRYMVQEFP-PGGSLLRIE   73 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~----------------~~~~~~~~~~~~~-~~~~~l~~~   73 (111)
                      ..+..+.+..|++++|.|.+.+.+  .+.+.|++.  +..+                .....++...... .....|.|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   85 (253)
T 3uzq_A            6 EQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLS   85 (253)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeC
Confidence            445567888999999999988743  668999982  1111                0011345444221 123449999


Q ss_pred             cCCCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          74 PVRHARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      ++.. .|+|.|.|.+.|..+........+.|.
T Consensus        86 ~v~~-~DsG~Y~C~~~~~~~~~~~~~~~l~V~  116 (253)
T 3uzq_A           86 SLTS-GDTAVYYCSRGWEGFAYWGQGTLVTVS  116 (253)
T ss_dssp             SCCG-GGCEEEEEEECSSSCCEECCCEEEEEC
T ss_pred             CCCc-ccCEEEEEEEeeCCccEECCCcEEEEe
Confidence            9998 999999999988544322233444444

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.84  E-value=2.8e-08  Score=50.28  Aligned_cols=80  Identities=23%  Similarity=0.293  Sum_probs=52.0

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEecc-CCCeEEEEECCee----ccC-C---CCceEEE----eCCCCCeEEEEccCCCC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKR----VSG-T---QSRYMVQ----EFPPGGSLLRIEPVRHA   78 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~----~~~-~---~~~~~~~----~~~~~~~~l~~~~~~~~   78 (111)
                      .+.+.+..+.+..|++++|.|...+. +.+.+.|++.+..    +.. .   ..++...    ........|.|.+++. 
T Consensus         9 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~-   87 (120)
T 2yz1_A            9 KVTQPEKSVSVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTP-   87 (120)
T ss_dssp             CEECCSSEEEECTTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCG-
T ss_pred             EEECCCceEEEeCCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCH-
Confidence            34455666788999999999998765 4568999997521    100 0   0111111    0011224599999998 


Q ss_pred             CCCeEEEEEeeeCC
Q psy2442          79 RDDAVYECVAENGV   92 (111)
Q Consensus        79 ~d~g~y~c~~~~~~   92 (111)
                      +|+|.|.|.+.+..
T Consensus        88 ~DsG~Y~C~~~~~~  101 (120)
T 2yz1_A           88 EDAGTYYCVKFQKG  101 (120)
T ss_dssp             GGCEEEEEEEEECC
T ss_pred             HHCEEEEEEEEcCC
Confidence            99999999988753

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.83  E-value=7.9e-08  Score=54.87  Aligned_cols=74  Identities=18%  Similarity=0.424  Sum_probs=50.3

Q ss_pred             CcceeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------------------cCCCCceEEEeCC-CCCeEEEEc
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------------------SGTQSRYMVQEFP-PGGSLLRIE   73 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------------------~~~~~~~~~~~~~-~~~~~l~~~   73 (111)
                      +....+..|++++|.|...+.+.  +.+.|++.  +..+                  .....++...... .....|.|.
T Consensus       158 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~  237 (268)
T 1x9q_A          158 TGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMN  237 (268)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             CCceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEEC
Confidence            34457889999999999987653  68999874  2211                  0112355443211 123459999


Q ss_pred             cCCCCCCCeEEEEEeeeC
Q psy2442          74 PVRHARDDAVYECVAENG   91 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~   91 (111)
                      ++.. .|+|.|.|.+.+.
T Consensus       238 ~v~~-~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          238 NLRV-EDTGIYYCTGASY  254 (268)
T ss_dssp             SCCG-GGCEEEEEEEEET
T ss_pred             CCCH-HHCEEEEEEEccC
Confidence            9998 9999999999874

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.83  E-value=6.9e-08  Score=58.38  Aligned_cols=75  Identities=24%  Similarity=0.445  Sum_probs=52.9

Q ss_pred             cCcceeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceecc----------------CCCCceEEEeCC-CCCeEEEEcc
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRVS----------------GTQSRYMVQEFP-PGGSLLRIEP   74 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~~----------------~~~~~~~~~~~~-~~~~~l~~~~   74 (111)
                      .+....+..|+.+.|.|.+.+.|  .+.+.|+++  +..+.                ....++...... .....|.|.+
T Consensus       224 ~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  303 (438)
T 1qgc_4          224 ESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSS  303 (438)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECC
Confidence            34456788999999999999877  568999985  33221                012455444321 1234599999


Q ss_pred             CCCCCCCeEEEEEeeeC
Q psy2442          75 VRHARDDAVYECVAENG   91 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~   91 (111)
                      +.. .|.|.|.|.+.|.
T Consensus       304 v~~-~D~G~Y~C~a~n~  319 (438)
T 1qgc_4          304 LRS-ADTAMYYCVRRED  319 (438)
T ss_dssp             CCG-GGCCEEEEEECCS
T ss_pred             CCh-hhCEEEEEEEEcc
Confidence            998 9999999999983

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.83  E-value=1.2e-07  Score=52.50  Aligned_cols=74  Identities=19%  Similarity=0.374  Sum_probs=51.3

Q ss_pred             cceeeecCCcEEEEEEEeccC--CCeEEEEECC--eecc------------------CCCCceEEEeCC-CCCeEEEEcc
Q psy2442          18 RNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KRVS------------------GTQSRYMVQEFP-PGGSLLRIEP   74 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~------------------~~~~~~~~~~~~-~~~~~l~~~~   74 (111)
                      ..+.+..|++++|.|...+.+  .+.+.|++..  ..+.                  ....|+...... .....|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (222)
T 1q9r_B            8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT   87 (222)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECc
Confidence            346788999999999998754  5689999742  1100                  012455544321 1234699999


Q ss_pred             CCCCCCCeEEEEEeeeCC
Q psy2442          75 VRHARDDAVYECVAENGV   92 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~~   92 (111)
                      +.. .|+|.|.|.+.+..
T Consensus        88 v~~-~D~G~Y~C~~~~~~  104 (222)
T 1q9r_B           88 LRA-EDSATYYCARDHDG  104 (222)
T ss_dssp             CCG-GGCEEEEEEECCCS
T ss_pred             CCc-ccCeEEEEEEeccC
Confidence            998 99999999998854

>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=98.83  E-value=1.3e-07  Score=50.71  Aligned_cols=82  Identities=12%  Similarity=0.279  Sum_probs=56.2

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ce---ec------cC------------CCCceEEEeCCC
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GK---RV------SG------------TQSRYMVQEFPP   65 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~---~~------~~------------~~~~~~~~~~~~   65 (111)
                      ....+.+.+..+.+..|++++|.|.........+.|++.  +.   .+      ..            ...++.......
T Consensus         8 gs~~v~Q~P~~v~v~~G~sVtL~C~~s~~~~~~v~WyrQ~pg~~~~~p~~Li~~~~~~~~~~y~~~~~~~~Rfs~s~~~~   87 (166)
T 3dmm_C            8 QAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTN   87 (166)
T ss_dssp             -CCEEEEECSCBCCCTTCCEEEEEEEESSSCCEEEEEEEETTCSCCSCEEEEEEESSSCCEEECGGGSSCCSEEEECSTT
T ss_pred             CCccEEEeCCeEEEcCCCCEEEEEEEeCCCCceEEEEEECCCCCCCCcEEEEEEeCCCCceeeccccccccceEEEcCCC
Confidence            345667777778899999999999987545568999863  22   11      00            123455443332


Q ss_pred             CCeEEEEccCCCCCCCeEEEEEeeeC
Q psy2442          66 GGSLLRIEPVRHARDDAVYECVAENG   91 (111)
Q Consensus        66 ~~~~l~~~~~~~~~d~g~y~c~~~~~   91 (111)
                      ....|.|.+++. +|+|.|.|.+...
T Consensus        88 ~~~sL~I~~vq~-eDsG~YyCa~~~~  112 (166)
T 3dmm_C           88 NKYVLTLNKFSK-ENEGYYFCSVISN  112 (166)
T ss_dssp             TEEEEEESSCCT-TTCEEEEEEEESS
T ss_pred             CEEEEEECCCCh-hhCEEEEEEECCC
Confidence            225599999998 9999999998753

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=98.82  E-value=2.9e-08  Score=50.86  Aligned_cols=77  Identities=17%  Similarity=0.334  Sum_probs=51.3

Q ss_pred             CcceeeecCCcEEEEEEEecc---CCCeEEEEECC--e---ec-c---C--------CCCceEEEeC-CCCCeEEEEccC
Q psy2442          17 PRNQAVKAGGITSFYCIARGD---PIPVIQWRKNG--K---RV-S---G--------TQSRYMVQEF-PPGGSLLRIEPV   75 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~---~~~~~~w~~~~--~---~~-~---~--------~~~~~~~~~~-~~~~~~l~~~~~   75 (111)
                      +..+.+..|++++|.|.....   ....+.|++..  .   .+ .   .        ...|+..... ......|.|.++
T Consensus         7 p~~v~v~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~   86 (126)
T 2h32_A            7 PPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISEL   86 (126)
T ss_dssp             CSEEEEETTCCEEEEEEECTTSCGGGCEEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEECCCCCEEEEEEecCCCccccceEEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEEeCCCCeEEEEECCC
Confidence            345688999999999998764   24579998742  1   11 0   0        0235554421 112345999999


Q ss_pred             CCCCCCeEEEEEeeeCCCc
Q psy2442          76 RHARDDAVYECVAENGVGD   94 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~~~~   94 (111)
                      +. +|+|.|.|.+.+..+.
T Consensus        87 ~~-~DsG~Y~C~~~~~~~~  104 (126)
T 2h32_A           87 QP-EDEAMYYCAMGARSSE  104 (126)
T ss_dssp             CG-GGCEEEEEEEECSCCC
T ss_pred             Ch-hHCEEEEEEEEcCCCC
Confidence            98 9999999998876543

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.82  E-value=2.8e-08  Score=49.96  Aligned_cols=89  Identities=22%  Similarity=0.192  Sum_probs=55.7

Q ss_pred             CcceeeecCCcEEEEEEEecc--CCCeEEEEECCe-------ec-c--------CCCCceEEEeC-CCCCeEEEEccCCC
Q psy2442          17 PRNQAVKAGGITSFYCIARGD--PIPVIQWRKNGK-------RV-S--------GTQSRYMVQEF-PPGGSLLRIEPVRH   77 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~-------~~-~--------~~~~~~~~~~~-~~~~~~l~~~~~~~   77 (111)
                      +..+.+..|++++|.|.....  ....+.|++...       .+ .        ....++.+... ......|.|.+++.
T Consensus         4 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~   83 (115)
T 2or7_A            4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVV   83 (115)
T ss_dssp             --CEEEETTSCEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCG
T ss_pred             ccEEEEEcCCCEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCCH
Confidence            445678899999999997653  245799998741       11 0        01234433211 01223499999998


Q ss_pred             CCCCeEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          78 ARDDAVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        78 ~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                       +|+|.|.|.+.+..... ...+.|.|...
T Consensus        84 -~DsG~Y~C~v~~~~~~~-~~~v~L~V~~~  111 (115)
T 2or7_A           84 -GDGGPYCCVVEIPGAFH-FVDYMLEVKPE  111 (115)
T ss_dssp             -GGCEEEEEEECCTTSCE-EEEEEEEEESC
T ss_pred             -HHCEEEEEEEECCCcee-EEEEEEEEcCC
Confidence             99999999998754432 55666666543

>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, domain swapping, collagen receptor, structural genomics; 1.76A {Mus musculus}

Probab=98.82  E-value=1.5e-07  Score=46.53  Aligned_cols=87  Identities=17%  Similarity=0.250  Sum_probs=55.4

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCC----CeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPI----PVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      +|.+...+. ..+..|+.++|.| ... ..    ..+.|++++.....     ...........|.|..+.. .|+|.|.
T Consensus         9 kPsL~a~p~-~~v~~G~~VTL~C-~~~-~~~~~~~~f~l~k~g~~~~~-----~~~~~~~~~a~f~i~~vt~-~~aG~Y~   79 (102)
T 4esk_A            9 DITIFPNSS-LMISQGTFVTVVC-SYS-DKHDLYNMVRLEKDGSTFME-----KSTEPYKTEDEFEIGPVNE-TITGHYS   79 (102)
T ss_dssp             EEEEECCSE-EEEETTCCEEEEE-ECT-TTGGGCCEEEEEETTEEEEE-----EECCSSCSEEEEEECSCCG-GGCEEEE
T ss_pred             CCEEEEeCC-CcccCCCcEEEEE-CCC-cCCCcccEEEEEECCccccc-----cccCCCCcceEEEeCcCCc-ccCeeEE
Confidence            344444444 3677899999999 643 33    47788888865321     0100011334588999998 9999999


Q ss_pred             EEeeeCCC-ceEeeEEEEEEe
Q psy2442          86 CVAENGVG-DAVSAEASLTVY  105 (111)
Q Consensus        86 c~~~~~~~-~~~~~~~~l~~~  105 (111)
                      |...+..+ ...+..+.|.|.
T Consensus        80 C~~~~~~~~S~~Sdpl~L~Vt  100 (102)
T 4esk_A           80 CIYSKGITWSERSKTLELKVI  100 (102)
T ss_dssp             EEEEETTTEEEECCCEEEEEE
T ss_pred             EEEeCCCccccCcCCEEEEEE
Confidence            99887654 223556666654

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.82  E-value=3.4e-09  Score=59.16  Aligned_cols=71  Identities=13%  Similarity=0.255  Sum_probs=47.4

Q ss_pred             ecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEe-CCC---CCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          23 KAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQE-FPP---GGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        23 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~-~~~---~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      ..|+.++|.|.+.+.+++  .+.|+++|..+........... .++   ....|.+..... .|.|.|.|.+.|..+.
T Consensus       148 ~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~~~  224 (234)
T 2j6e_L          148 LQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQW-KSHRSYSCQVTHEGST  224 (234)
T ss_dssp             HTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGT-TTSCCEEEEEEBTTBC
T ss_pred             hcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHc-CCCCeEEEEEEeCCCc
Confidence            458899999999885443  8999999988753210000000 000   123477788887 8999999999997654

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=98.81  E-value=2.2e-08  Score=50.79  Aligned_cols=75  Identities=21%  Similarity=0.313  Sum_probs=51.1

Q ss_pred             cCcceeeecCCcEEEEEEEeccC----CCeEEEEECC----eeccC----CCCceEEEeC----CCCCeEEEEccCCCCC
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDP----IPVIQWRKNG----KRVSG----TQSRYMVQEF----PPGGSLLRIEPVRHAR   79 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~----~~~~~----~~~~~~~~~~----~~~~~~l~~~~~~~~~   79 (111)
                      .+..+.+..|++++|.|.....+    ...+.|++..    ..+..    ...++.....    ......|.|.+++. +
T Consensus        13 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~~~~~~~~~~R~~~~~~~~~~~~~~~sL~I~~v~~-~   91 (120)
T 3noi_A           13 QPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRG-H   91 (120)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTSCCCEEEEEEESSCSTTCBCCTTCTTTTTCEECCCHHHHHTTCBCCEEESSCCG-G
T ss_pred             CCCEEEEEcCCCEEEEeeecCCCCCCceeEEEEEeccCCCCceecccccccCCcEEeecccccccCCcEEEEEecCCh-h
Confidence            45567889999999999987654    3478999875    32221    1234433210    11234599999998 9


Q ss_pred             CCeEEEEEeeeC
Q psy2442          80 DDAVYECVAENG   91 (111)
Q Consensus        80 d~g~y~c~~~~~   91 (111)
                      |+|.|.|.+...
T Consensus        92 DsG~Y~C~v~~~  103 (120)
T 3noi_A           92 DASIYVCRVEVL  103 (120)
T ss_dssp             GCEEEEEEEEET
T ss_pred             hCEEEEEEEEEC
Confidence            999999998753

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=98.80  E-value=7.9e-08  Score=48.34  Aligned_cols=77  Identities=14%  Similarity=0.283  Sum_probs=52.3

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccC-CCeEEEEEC--Ce----e-c-c--CC---------CCceEEEeCCCCCeEEEE
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRKN--GK----R-V-S--GT---------QSRYMVQEFPPGGSLLRI   72 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~--~~----~-~-~--~~---------~~~~~~~~~~~~~~~l~~   72 (111)
                      +.+.+..+.+.+|++++|.|...... ...+.|++.  +.    . + .  ..         ..++...... ....|.|
T Consensus         3 ~~q~p~~v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~rf~~~~~~-~~~~L~I   81 (114)
T 2hp4_A            3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGASWLFQPRGAAASPTFLLYLNQNKPKAAEGLDTQRFSGKRLG-DTFVLTL   81 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEEESSSSCCCEEEEEESSSSCEECTTCCTTTEEEEEET-TEEEEEE
T ss_pred             cEeCCCEEEEcCCCCEEEEEEeecCCCCceEEEEEECCCCCCCcEEEEEEcCCCccccCCCCcccEEEEecC-CEEEEEE
Confidence            34566677889999999999987543 457999873  32    1 1 0  00         2355443222 2345999


Q ss_pred             ccCCCCCCCeEEEEEeeeC
Q psy2442          73 EPVRHARDDAVYECVAENG   91 (111)
Q Consensus        73 ~~~~~~~d~g~y~c~~~~~   91 (111)
                      .+++. +|+|.|.|.+.+.
T Consensus        82 ~~~~~-~Dsg~Y~C~~~~~   99 (114)
T 2hp4_A           82 SDFRR-ENEGYYFCSALSN   99 (114)
T ss_dssp             SSCCG-GGCEEEEEEEEET
T ss_pred             CCCCH-HHCEEEEEEEecC
Confidence            99998 9999999998764

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.80  E-value=2e-08  Score=56.83  Aligned_cols=90  Identities=17%  Similarity=0.318  Sum_probs=54.8

Q ss_pred             eEEecC---CCeeEEcCcceeeecCCcEEEEEEEecc-CCC-eEEEEECCeeccCC-CCceEEEeCCCC----CeEEEEc
Q psy2442           4 KVRFLD---PPEITLRPRNQAVKAGGITSFYCIARGD-PIP-VIQWRKNGKRVSGT-QSRYMVQEFPPG----GSLLRIE   73 (111)
Q Consensus         4 ~l~v~~---~p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~-~~~~~~~~~~~~----~~~l~~~   73 (111)
                      +|.|..   +|.+...+....+..|+.++|.|.+.+. |.+ .+.|++++..+... ..........+.    ...|.+.
T Consensus       141 ~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~  220 (252)
T 3bkj_L          141 KLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT  220 (252)
T ss_dssp             EEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEE
T ss_pred             EEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEc
Confidence            455653   4555443322234468899999999884 443 69999999876432 000000000001    1237788


Q ss_pred             cCCCCCCCeEEEEEeeeCCCc
Q psy2442          74 PVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      .+.. .|.|.|.|.+.|....
T Consensus       221 ~~~~-~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          221 KDEY-ERHNSYTCEATHKTST  240 (252)
T ss_dssp             HHHH-HHCCEEEEEEECTTCS
T ss_pred             chhc-cCCCeEEEEEEeCCCC
Confidence            8877 8999999999997543

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.80  E-value=1.9e-07  Score=52.25  Aligned_cols=77  Identities=16%  Similarity=0.262  Sum_probs=53.2

Q ss_pred             EEcCcceeeecCCcEEEEEEEecc--CCCeEEEEECC--eec----c---C--------CCCceEEEeCCC-CCeEEEEc
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGD--PIPVIQWRKNG--KRV----S---G--------TQSRYMVQEFPP-GGSLLRIE   73 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~--~~~----~---~--------~~~~~~~~~~~~-~~~~l~~~   73 (111)
                      .+.+..+.+..|++++|.|...+.  +...+.|++..  ..+    .   .        ...|+....... ....|.|.
T Consensus         5 ~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (230)
T 1ypz_F            5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (230)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             cccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEEC
Confidence            445666788999999999998764  45689999742  111    0   0        124555543221 23459999


Q ss_pred             cCCCCCCCeEEEEEeeeC
Q psy2442          74 PVRHARDDAVYECVAENG   91 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~   91 (111)
                      +++. .|+|.|.|.+.+.
T Consensus        85 ~v~~-~D~G~Y~C~~~~~  101 (230)
T 1ypz_F           85 SLEE-EDEAIYYCSYGEG  101 (230)
T ss_dssp             SCCG-GGCSEEEEEECCT
T ss_pred             cCCh-hhCEEEEEEEECC
Confidence            9998 9999999999874

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A

Probab=98.80  E-value=1.8e-07  Score=51.61  Aligned_cols=77  Identities=17%  Similarity=0.245  Sum_probs=52.7

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc------C-----CCCceEEEeC-CCCCeEEEEccCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS------G-----TQSRYMVQEF-PPGGSLLRIEPVRHA   78 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~------~-----~~~~~~~~~~-~~~~~~l~~~~~~~~   78 (111)
                      +.+.+..+.+.+|++++|.|...+.....+.|++.  +..+.      .     ...|+..... ......|.|.+++. 
T Consensus         3 VtQ~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~-   81 (200)
T 3rgv_A            3 VTQMQGQVTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQE-   81 (200)
T ss_dssp             EECCCSEEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCS-
T ss_pred             cEECCCEEEEeCCCCEEEEEEecCCCCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECCCCCEEEEEEcCCcC-
Confidence            34556667899999999999987755568999974  22110      0     0235544421 11234499999998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|+|.|.|.+..
T Consensus        82 ~DsG~Y~Ca~~~   93 (200)
T 3rgv_A           82 IDSAVYYCAANS   93 (200)
T ss_dssp             TTCEEEEEEEES
T ss_pred             ccCCCEEEEecc
Confidence            999999999864

>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1

Probab=98.80  E-value=4.5e-08  Score=51.16  Aligned_cols=75  Identities=17%  Similarity=0.235  Sum_probs=50.2

Q ss_pred             EcCcceeeecCCcEEEEEEEeccC-CCeEEEEECC--ee---c---c-CC-----CCceEEEe-CCCCCeEEEEccCCCC
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDP-IPVIQWRKNG--KR---V---S-GT-----QSRYMVQE-FPPGGSLLRIEPVRHA   78 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~--~~---~---~-~~-----~~~~~~~~-~~~~~~~l~~~~~~~~   78 (111)
                      +.+..+.+.+|++++|.|...... ...+.|++..  ..   +   . ..     ..|+.... .......|.|.+++. 
T Consensus         5 Q~p~~v~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~-   83 (142)
T 2ol3_A            5 QTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI-   83 (142)
T ss_dssp             CCCSEEEEETTCCEEECCBCCCCCSSCEEEEEEECTTCCEEEEEEEETTCSSCCEETTEEECCBGGGTBCCEEECSCCT-
T ss_pred             ecCCeEEEecCCCEEEEEEecCCcCCceEEEEEeCCCCCcEEEEEECCCCcccccCCCEEEEecCCCCEEEEEECCCCh-
Confidence            445667889999999999976654 3479998742  11   1   0 00     13454421 111234499999998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|+|.|.|.+.+
T Consensus        84 ~Dsg~Y~C~~~~   95 (142)
T 2ol3_A           84 EDSAVYFCAMRG   95 (142)
T ss_dssp             TTCEEEEEEEEC
T ss_pred             hhCEEEEEEEEc
Confidence            999999999876

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.79  E-value=1.1e-07  Score=52.62  Aligned_cols=75  Identities=21%  Similarity=0.414  Sum_probs=51.7

Q ss_pred             CcceeeecCCcEEEEEEEeccC--CCeEEEEECC--eecc---------------CCCCceEEEeCC-CCCeEEEEccCC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KRVS---------------GTQSRYMVQEFP-PGGSLLRIEPVR   76 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~---------------~~~~~~~~~~~~-~~~~~l~~~~~~   76 (111)
                      +..+.+..|++++|.|...+.+  .+.+.|++..  ..+.               ....|+...... .....|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ   86 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred             CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence            4456788999999999998754  4689999752  2110               012455544321 123469999999


Q ss_pred             CCCCCeEEEEEeeeCC
Q psy2442          77 HARDDAVYECVAENGV   92 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~   92 (111)
                      . .|+|.|.|.+.+..
T Consensus        87 ~-~D~G~Y~C~~~~~~  101 (215)
T 1c5d_H           87 T-EDTAIYFCTREDGW  101 (215)
T ss_dssp             G-GGCEEEEEEECCSS
T ss_pred             c-ccCEEEEEEEecCC
Confidence            8 99999999998853

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.79  E-value=1.9e-07  Score=60.06  Aligned_cols=88  Identities=19%  Similarity=0.247  Sum_probs=57.7

Q ss_pred             cceeeecCCcEEEEEEEecc--CCCeEEEEECCeeccCCCCceEEE-------eCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          18 RNQAVKAGGITSFYCIARGD--PIPVIQWRKNGKRVSGTQSRYMVQ-------EFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      ....+..|+.+.|.|.+.+.  +.+.+.|++++..+.... .....       ........|.|.++.. .|.|.|.|.+
T Consensus       232 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~~  309 (772)
T 3v2a_R          232 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKK-LVNRDLKTQSGSEMKKFLSTLTIDGVTR-SDQGLYTCAA  309 (772)
T ss_dssp             SCEEEETTCCEEEEEEEEECTTCCCEEEEECC---------CEEEEC-----CCCEEEEEEEEESSCCS-TTCSEEEEEE
T ss_pred             CceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCce-eeeccccccccccceEEEEEEEECcCCc-CCCeEEEEEE
Confidence            33578899999999999874  455899999887653211 11000       0000224589999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEecCC
Q psy2442          89 ENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~~~~  108 (111)
                      .|..+.. ...+.+.|..+|
T Consensus       310 ~~~~~~~-~~~~~l~V~~~p  328 (772)
T 3v2a_R          310 SSGLMTK-KNSTFVRVHEKP  328 (772)
T ss_dssp             ECSSCEE-EEEEEEEEECCC
T ss_pred             EcCCcce-eEEEEEEEeCCC
Confidence            9987763 677777777665

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.79  E-value=2.4e-08  Score=55.30  Aligned_cols=89  Identities=13%  Similarity=0.237  Sum_probs=55.8

Q ss_pred             eeEEecC----CCeeEEcCcceeeecCCcEEEEEEEecc-CCC-eEEEEECCeecc---CC----CCceEEEeCCCCCeE
Q psy2442           3 RKVRFLD----PPEITLRPRNQAVKAGGITSFYCIARGD-PIP-VIQWRKNGKRVS---GT----QSRYMVQEFPPGGSL   69 (111)
Q Consensus         3 ~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~---~~----~~~~~~~~~~~~~~~   69 (111)
                      ++|.|..    +|.+...+....+..|+.+.|.|.+.+. |.| .+.|++++....   ..    ...+.      ....
T Consensus       114 ~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~------~~s~  187 (220)
T 1pz5_B          114 TSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYS------LSSL  187 (220)
T ss_dssp             EEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEE------EEEE
T ss_pred             EEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcCCcccCCeEE------EEEE
Confidence            3555652    3444433322345679999999999987 878 999998776310   00    01111      1234


Q ss_pred             EEEccCCCCCCCeEEEEEeeeCCCceEeeEE
Q psy2442          70 LRIEPVRHARDDAVYECVAENGVGDAVSAEA  100 (111)
Q Consensus        70 l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~  100 (111)
                      |.+..... .+ |.|.|.+.|..+.. ...+
T Consensus       188 L~i~~~~~-~~-g~Y~C~a~n~~~~~-~~~~  215 (220)
T 1pz5_B          188 VTVPSSTW-PS-QTVICNVAHPASKV-DLIK  215 (220)
T ss_dssp             EEECGGGT-TT-SCCEEEEEEGGGTE-EEEE
T ss_pred             EEEcchhc-CC-ceEEEEEEECCccE-eeee
Confidence            77777765 55 99999999988753 4443

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.78  E-value=7.5e-09  Score=57.50  Aligned_cols=84  Identities=17%  Similarity=0.129  Sum_probs=54.1

Q ss_pred             CCCeeEEcCccee--eecCCcEEEEEEEeccC---C-CeEEEEECCeeccCCCCceEEEeCCC----CCeEEEEccCCCC
Q psy2442           9 DPPEITLRPRNQA--VKAGGITSFYCIARGDP---I-PVIQWRKNGKRVSGTQSRYMVQEFPP----GGSLLRIEPVRHA   78 (111)
Q Consensus         9 ~~p~~~~~~~~~~--~~~g~~~~l~c~~~~~~---~-~~~~w~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~   78 (111)
                      .+|.+...+....  +..|+++.|.|.+.+.+   . +.+.|++++..+... ..........    ....|.|.++.. 
T Consensus         8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~-   85 (218)
T 2rgs_A            8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTA-QTQTHREDYNSTIRVVSTLPIQHQDW-   85 (218)
T ss_dssp             -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCC-EEEEEEETTTTEEEEEEEEECCHHHH-
T ss_pred             CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCc-ccccccccCCCeEEEEEEEEEcHHHc-
Confidence            3455543343333  77899999999998863   3 689999998776422 1100110000    123488888887 


Q ss_pred             CCCeEEEEEeeeCCCc
Q psy2442          79 RDDAVYECVAENGVGD   94 (111)
Q Consensus        79 ~d~g~y~c~~~~~~~~   94 (111)
                      .|.|.|.|.+.|..+.
T Consensus        86 ~D~g~Y~C~~~~~~~~  101 (218)
T 2rgs_A           86 MSGKEFKCKVNNKDLP  101 (218)
T ss_dssp             HTTCCEEEEEEETTCS
T ss_pred             CCCCeEEEEEECCcCC
Confidence            8999999999997653

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.78  E-value=8e-09  Score=57.64  Aligned_cols=83  Identities=16%  Similarity=0.281  Sum_probs=45.9

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCC--eEEEEECCeeccCC-CCceEEEeCCCC----CeEEEEccCCCCCCCe
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGT-QSRYMVQEFPPG----GSLLRIEPVRHARDDA   82 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~-~~~~~~~~~~~~----~~~l~~~~~~~~~d~g   82 (111)
                      +|.+...+.......|+.++|.|.+.+.+++  .+.|+++|..+... ..........+.    ...|.+..... .|.|
T Consensus       134 ~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~g  212 (233)
T 3bqu_C          134 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY-ERHN  212 (233)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHH-HTCC
T ss_pred             CCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHh-CCCC
Confidence            4555443322233468999999999885443  69999998876432 000000000001    12367777776 7899


Q ss_pred             EEEEEeeeCCC
Q psy2442          83 VYECVAENGVG   93 (111)
Q Consensus        83 ~y~c~~~~~~~   93 (111)
                      .|.|.+.|...
T Consensus       213 ~Y~C~a~n~~~  223 (233)
T 3bqu_C          213 SYTCEATHKTS  223 (233)
T ss_dssp             CEEEEEEEC--
T ss_pred             CEEEEEEeCCC
Confidence            99999998643

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.77  E-value=3.8e-09  Score=58.45  Aligned_cols=72  Identities=17%  Similarity=0.256  Sum_probs=48.8

Q ss_pred             ceeeecCCcEEEEEEEeccCC-----CeEEEEECCeecc------------CCCCceEEEeCC--CCCeEEEEccCCCCC
Q psy2442          19 NQAVKAGGITSFYCIARGDPI-----PVIQWRKNGKRVS------------GTQSRYMVQEFP--PGGSLLRIEPVRHAR   79 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~-----~~~~w~~~~~~~~------------~~~~~~~~~~~~--~~~~~l~~~~~~~~~   79 (111)
                      .+.+..|+.+.|.|...+.+.     +.+.|++.+....            ....++.+....  .....|.|.++.. .
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~-~   82 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRV-T   82 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCG-G
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccc-c
Confidence            456789999999999877653     5789998764320            111233222100  0134499999998 9


Q ss_pred             CCeEEEEEeeeC
Q psy2442          80 DDAVYECVAENG   91 (111)
Q Consensus        80 d~g~y~c~~~~~   91 (111)
                      |.|.|.|.+.+.
T Consensus        83 D~G~Y~C~~~~~   94 (222)
T 4i0k_A           83 DEGSYTCFVSIQ   94 (222)
T ss_dssp             GCSCEEEEEEEC
T ss_pred             cCEEEEEEEEeC
Confidence            999999999875

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.77  E-value=2.1e-07  Score=52.70  Aligned_cols=76  Identities=20%  Similarity=0.281  Sum_probs=51.6

Q ss_pred             EcCcceeeecCCcEEEEEEEecc--CCCeEEEEECC--ee--cc-------------CCCCceEEEeCC-CCCeEEEEcc
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGD--PIPVIQWRKNG--KR--VS-------------GTQSRYMVQEFP-PGGSLLRIEP   74 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~--~~--~~-------------~~~~~~~~~~~~-~~~~~l~~~~   74 (111)
                      ..+..+.+.+|++++|.|.+.+.  +.+.+.|++..  ..  ..             ....++...... .....|.|.+
T Consensus        13 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   92 (257)
T 3gkz_A           13 QESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKS   92 (257)
T ss_dssp             EEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             ECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECC
Confidence            34455678899999999999884  46789999832  11  00             112344443211 1223599999


Q ss_pred             CCCCCCCeEEEEEeeeC
Q psy2442          75 VRHARDDAVYECVAENG   91 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~   91 (111)
                      +.. .|+|.|.|.+.|.
T Consensus        93 v~~-~DsG~Y~C~~~n~  108 (257)
T 3gkz_A           93 VSS-EDTATYYCSYFDS  108 (257)
T ss_dssp             CCG-GGCEEEEEEEECT
T ss_pred             CCh-hhCEEEEEEEecC
Confidence            998 9999999999986

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.77  E-value=1.1e-07  Score=53.04  Aligned_cols=76  Identities=21%  Similarity=0.312  Sum_probs=52.9

Q ss_pred             CcceeeecCCcEEEEEEEeccCC----CeEEEEECC--eec----c-----------CCCCceEEEeCC-CCCeEEEEcc
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPI----PVIQWRKNG--KRV----S-----------GTQSRYMVQEFP-PGGSLLRIEP   74 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~----~~~~w~~~~--~~~----~-----------~~~~~~~~~~~~-~~~~~l~~~~   74 (111)
                      +..+.+..|++++|.|...+.+.    +.+.|++..  ..+    .           ....|+...... .....|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS   86 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence            44567889999999999987664    789998742  211    0           012455554321 1235699999


Q ss_pred             CCCCCCCeEEEEEeeeCCC
Q psy2442          75 VRHARDDAVYECVAENGVG   93 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~~~   93 (111)
                      ++. .|+|.|.|.+.+..|
T Consensus        87 v~~-~D~G~Y~C~~~~~~g  104 (228)
T 3bae_H           87 VDT-ADTATYYCARRGFYG  104 (228)
T ss_dssp             CCG-GGCEEEEEEEEEEST
T ss_pred             CCc-ccCEEEEEEEecCCC
Confidence            998 999999999988643

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.76  E-value=2.3e-07  Score=52.55  Aligned_cols=76  Identities=17%  Similarity=0.395  Sum_probs=52.1

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceec------cCC--------CC-ceEEEeCCCCCeEEEEccCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRV------SGT--------QS-RYMVQEFPPGGSLLRIEPVR   76 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~------~~~--------~~-~~~~~~~~~~~~~l~~~~~~   76 (111)
                      .+.+..+.+..|++++|.|...+.+.+.+.|++.  +...      ...        .. |+...... ... |.|.+++
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~-L~I~~v~   82 (253)
T 3to4_D            5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVT-DTE-LRLQVAN   82 (253)
T ss_dssp             EEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCS-SSC-CEEEEES
T ss_pred             EeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCC-CCe-EEEccCC
Confidence            3456667889999999999988888889999872  1110      000        01 44443222 222 8999999


Q ss_pred             CCCCCeEEEEEeeeCC
Q psy2442          77 HARDDAVYECVAENGV   92 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~   92 (111)
                      . .|+|.|.|.+.+..
T Consensus        83 ~-~DsG~Y~C~~~~~~   97 (253)
T 3to4_D           83 M-SQGRTLYCTSSADH   97 (253)
T ss_dssp             C-SSCEEEEEEEECSC
T ss_pred             h-hhCeEEEEEEecCC
Confidence            8 99999999997643

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.75  E-value=3e-07  Score=51.15  Aligned_cols=74  Identities=22%  Similarity=0.338  Sum_probs=51.5

Q ss_pred             cceeeecCCcEEEEEEEeccC--CCeEEEEECC--ee---c-c------------CCCCceEEEeCC-CCCeEEEEccCC
Q psy2442          18 RNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KR---V-S------------GTQSRYMVQEFP-PGGSLLRIEPVR   76 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~---~-~------------~~~~~~~~~~~~-~~~~~l~~~~~~   76 (111)
                      ..+.+..|++++|.|...+.+  .+.+.|++..  ..   + .            ....|+...... .....|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   87 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence            456888999999999988754  3689999742  11   1 0            012455554321 123459999999


Q ss_pred             CCCCCeEEEEEeeeCC
Q psy2442          77 HARDDAVYECVAENGV   92 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~   92 (111)
                      . .|+|.|.|.+.+..
T Consensus        88 ~-~D~G~Y~C~~~~~~  102 (223)
T 1dee_B           88 A-EDTAVYYCAKVKFY  102 (223)
T ss_dssp             G-GGCEEEEEEEESSS
T ss_pred             H-HHCEEEEEEEeccc
Confidence            8 99999999998864

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.75  E-value=3.6e-08  Score=54.27  Aligned_cols=88  Identities=14%  Similarity=0.251  Sum_probs=54.2

Q ss_pred             eEEecC----CCeeEEcCcceeeecCCcEEEEEEEecc-CCC-eEEEEECCeeccCC-CCceEEEeCC-CCCeEEEEccC
Q psy2442           4 KVRFLD----PPEITLRPRNQAVKAGGITSFYCIARGD-PIP-VIQWRKNGKRVSGT-QSRYMVQEFP-PGGSLLRIEPV   75 (111)
Q Consensus         4 ~l~v~~----~p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~-~~~~~~~~~~-~~~~~l~~~~~   75 (111)
                      .|.|..    +|.+...+....+..|+.+.|.|.+.+. |.+ .+.|++++..+... ..... .... .....|.+...
T Consensus       108 ~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~  186 (210)
T 3d9a_H          108 LVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVL-QSDLYTLSSSVTVPSS  186 (210)
T ss_dssp             EEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEE-ETTEEEEEEEEEEEGG
T ss_pred             EEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCcc-CCCcEEEEEEEEEcHH
Confidence            456653    3444433322345689999999999886 777 99999987753210 01110 0000 01233777777


Q ss_pred             CCCCCCeEEEEEeeeCCCc
Q psy2442          76 RHARDDAVYECVAENGVGD   94 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~~~~   94 (111)
                      .. .| |.|.|.+.|..+.
T Consensus       187 ~~-~~-g~Y~C~a~n~~~~  203 (210)
T 3d9a_H          187 TW-PS-ETVTCNVAHPASS  203 (210)
T ss_dssp             GT-TT-SCCEEEEEEGGGT
T ss_pred             Hc-CC-CcEEEEEEeCCCC
Confidence            75 56 9999999998765

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.75  E-value=2.1e-07  Score=52.18  Aligned_cols=73  Identities=21%  Similarity=0.252  Sum_probs=50.2

Q ss_pred             CcceeeecCCcEEEEEEEeccC--CCeEEEEECC--eecc---------------CCCCceEEEeCC-CCCeEEEEccCC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KRVS---------------GTQSRYMVQEFP-PGGSLLRIEPVR   76 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~---------------~~~~~~~~~~~~-~~~~~l~~~~~~   76 (111)
                      +..+.+..|++++|.|...+.+  .+.+.|++..  ..+.               ....|+...... .....|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (232)
T 1dn0_B            7 WGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT   86 (232)
T ss_dssp             ECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCC
Confidence            3446788999999999988754  4689999742  1110               012455554321 123469999999


Q ss_pred             CCCCCeEEEEEeee
Q psy2442          77 HARDDAVYECVAEN   90 (111)
Q Consensus        77 ~~~d~g~y~c~~~~   90 (111)
                      . .|+|.|.|.+.+
T Consensus        87 ~-~D~G~Y~C~~~~   99 (232)
T 1dn0_B           87 A-ADTAVYYCARPP   99 (232)
T ss_dssp             G-GGCEEEEEEECS
T ss_pred             c-ccCEEEEEEEec
Confidence            8 999999999973

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.75  E-value=8.7e-08  Score=52.70  Aligned_cols=75  Identities=24%  Similarity=0.389  Sum_probs=51.5

Q ss_pred             CcceeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceecc---------------CCCCceEEEeCC-CCCeEEEEccCC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRVS---------------GTQSRYMVQEFP-PGGSLLRIEPVR   76 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~~---------------~~~~~~~~~~~~-~~~~~l~~~~~~   76 (111)
                      +..+.+..|+++.|.|.+.+.+  .+.+.|++.  +....               ....|+.+.... .....|.|.++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   86 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT   86 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence            4456788999999999998764  368999874  22110               012455544211 122369999999


Q ss_pred             CCCCCeEEEEEeeeCC
Q psy2442          77 HARDDAVYECVAENGV   92 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~   92 (111)
                      . .|+|.|.|.+.|..
T Consensus        87 ~-~D~G~Y~C~~~~~~  101 (210)
T 3d9a_H           87 T-EDTATYYCANWDGD  101 (210)
T ss_dssp             G-GGCEEEEEEETTSS
T ss_pred             c-ccCEEEEEEEecCc
Confidence            8 99999999998853

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.74  E-value=4.1e-08  Score=55.66  Aligned_cols=83  Identities=14%  Similarity=0.328  Sum_probs=50.6

Q ss_pred             eEEec----CCCeeEEcCcceeeecCCcEEEEEEEec-cCCC-eEEEEECCeeccCC-------CCceEEEeCCCCCeEE
Q psy2442           4 KVRFL----DPPEITLRPRNQAVKAGGITSFYCIARG-DPIP-VIQWRKNGKRVSGT-------QSRYMVQEFPPGGSLL   70 (111)
Q Consensus         4 ~l~v~----~~p~~~~~~~~~~~~~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~-------~~~~~~~~~~~~~~~l   70 (111)
                      .|.|.    .+|.+........+..|+.++|.|.+.+ .|.+ .+.|++++......       ...+..      ...|
T Consensus       114 ~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~------~s~L  187 (253)
T 3liz_H          114 LVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL------SSSV  187 (253)
T ss_dssp             EEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEE------EEEE
T ss_pred             EEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCccccCCeEEE------EEEE
Confidence            55664    3455543333334567999999999988 5655 79999887632100       012221      1347


Q ss_pred             EEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          71 RIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        71 ~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      .+..... .| |.|.|.+.|..+.
T Consensus       188 ~i~~~~~-~d-g~ytC~v~~~~~~  209 (253)
T 3liz_H          188 TVPSSTW-PS-ETVTCNVAHPASS  209 (253)
T ss_dssp             EEETTST-TT-SCCEEEEEEGGGT
T ss_pred             EEcHHHC-CC-ceEEEEEEECCCC
Confidence            7888876 78 9999999998764

>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, extra celluar domain, domain swappin nysgrc, structural genomics; 1.90A {Mus musculus}

Probab=98.74  E-value=2.7e-07  Score=46.76  Aligned_cols=88  Identities=17%  Similarity=0.252  Sum_probs=53.9

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCC----CeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPI----PVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      +|.+...+. -.+..|+.++|.| ... ..    ..+.|+++|.....     ...........|.|..+.. .|+|.|.
T Consensus         9 kPsL~a~P~-~vV~~G~~VTL~C-~~~-~~~~~~~~f~L~k~g~~~~~-----~~~~~~~~~a~f~i~~vt~-~daG~Y~   79 (118)
T 4ety_A            9 DITIFPNSS-LMISQGTFVTVVC-SYS-DKHDLYNMVRLEKDGSTFME-----KSTEPYKTEDEFEIGPVNE-TITGHYS   79 (118)
T ss_dssp             EEEEECCSE-EEEETTCCEEEEE-ECT-TTGGGCCEEEEEETTEEEEE-----EECCSSSSEEEEEECSCCG-GGCEEEE
T ss_pred             CCEEEEeCC-CcccCCCcEEEEE-CCC-CCCcccCEEEEEECCcCccc-----cccCCCCcceEEEeCccCc-cCCeEEE
Confidence            344444444 3677899999999 543 33    46788888875421     0000011334589999998 9999999


Q ss_pred             EEeeeCCC-ceEeeEEEEEEec
Q psy2442          86 CVAENGVG-DAVSAEASLTVYE  106 (111)
Q Consensus        86 c~~~~~~~-~~~~~~~~l~~~~  106 (111)
                      |...+..+ ...+..+.|.|.+
T Consensus        80 C~y~~~~~wS~~Sdpl~L~Vtg  101 (118)
T 4ety_A           80 CIYSKGITWSERSKTLELKVIK  101 (118)
T ss_dssp             EEEEC----CEECCCEEEEEEC
T ss_pred             EEeeCCCccccccCCEEEEEEE
Confidence            99877544 2235566666654

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=98.74  E-value=8.1e-07  Score=49.30  Aligned_cols=77  Identities=21%  Similarity=0.367  Sum_probs=53.8

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--ee---c-c--C-----CCCceEEEe-CCCCCeEEEEccCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KR---V-S--G-----TQSRYMVQE-FPPGGSLLRIEPVRHA   78 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~---~-~--~-----~~~~~~~~~-~~~~~~~l~~~~~~~~   78 (111)
                      +.+.+..+.+.+|++++|.|...+.....+.|++..  ..   + .  .     ...|+.... .......|.|.+++. 
T Consensus         6 v~Q~p~~~~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~-   84 (210)
T 2eys_A            6 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL-   84 (210)
T ss_dssp             EEEECSEEEEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG-
T ss_pred             EEEeCCEEEEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCc-
Confidence            445566788999999999999877666689999742  11   1 1  1     023454432 111334599999998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|+|.|.|.+.+
T Consensus        85 ~Dsg~Y~C~~~~   96 (210)
T 2eys_A           85 SDSASYICVVSD   96 (210)
T ss_dssp             GGCEEEEEEEES
T ss_pred             ccCceEEEEEEc
Confidence            999999999876

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.74  E-value=6.1e-08  Score=54.53  Aligned_cols=82  Identities=20%  Similarity=0.286  Sum_probs=50.3

Q ss_pred             CCeeE-EcCcceeeecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEE--EeC----CCCC----eEEEEccCC
Q psy2442          10 PPEIT-LRPRNQAVKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMV--QEF----PPGG----SLLRIEPVR   76 (111)
Q Consensus        10 ~p~~~-~~~~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~--~~~----~~~~----~~l~~~~~~   76 (111)
                      +|.+. ..+....+..|+.++|.|.+.+.+++  .+.|+++|..+.... +...  ...    .+..    ..|.+....
T Consensus       124 ~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~  202 (246)
T 4dzb_B          124 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGV-CTDPQPLKEQPALNDSRYALSSRLRVSATF  202 (246)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTE-EECSSCEESSTTSTTCCEEEEEEEEEEHHH
T ss_pred             CCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEECCCCc-ccccccccccccCCCCCEEEEEEEEECHHH
Confidence            44443 23333345569999999999886654  899999998875321 0000  000    0011    226666665


Q ss_pred             CCCC-CeEEEEEeeeCCC
Q psy2442          77 HARD-DAVYECVAENGVG   93 (111)
Q Consensus        77 ~~~d-~g~y~c~~~~~~~   93 (111)
                      . .| .|.|.|.+.|...
T Consensus       203 ~-~d~~g~YtC~v~~~~~  219 (246)
T 4dzb_B          203 W-QNPRNHFRCQVQFYGL  219 (246)
T ss_dssp             H-TCTTCEEEEEEEECCB
T ss_pred             h-ccCCCeEEEEEEecCC
Confidence            5 66 8999999998653

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.74  E-value=5.9e-09  Score=56.24  Aligned_cols=72  Identities=18%  Similarity=0.282  Sum_probs=50.5

Q ss_pred             eeeecCCcEEEEEEEeccCCCeEEEEECCee--cc-----------CCCCceEEEeC--CCCCeEEEEccCCCCCCCeEE
Q psy2442          20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKR--VS-----------GTQSRYMVQEF--PPGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~--~~-----------~~~~~~~~~~~--~~~~~~l~~~~~~~~~d~g~y   84 (111)
                      +.+..|+.+.|.|...+.+.+.+.|++++..  +.           ....++.....  ......|.|.++.. .|+|.|
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y   83 (184)
T 2ny1_B            5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKI-EDSDTY   83 (184)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCG-GGCEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCH-HHCEEE
Confidence            5678999999999998888889999998752  11           00122222110  00233499999998 999999


Q ss_pred             EEEeeeCC
Q psy2442          85 ECVAENGV   92 (111)
Q Consensus        85 ~c~~~~~~   92 (111)
                      .|.+.|..
T Consensus        84 ~C~~~~~~   91 (184)
T 2ny1_B           84 ICEVEDQK   91 (184)
T ss_dssp             EEEETTEE
T ss_pred             EEEEEcCC
Confidence            99988754

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.73  E-value=3.4e-07  Score=50.65  Aligned_cols=75  Identities=21%  Similarity=0.429  Sum_probs=51.8

Q ss_pred             CcceeeecCCcEEEEEEEeccC--CCeEEEEECC--ee---c---cC------------CCCceEEEeCC-CCCeEEEEc
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KR---V---SG------------TQSRYMVQEFP-PGGSLLRIE   73 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~---~---~~------------~~~~~~~~~~~-~~~~~l~~~   73 (111)
                      +..+.+..|++++|.|...+.+  .+.+.|++.+  ..   +   ..            ...|+...... .....|.|.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (220)
T 1pz5_B            7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence            4456788999999999998765  5789999853  11   1   00            02455543211 122359999


Q ss_pred             cCCCCCCCeEEEEEeeeCC
Q psy2442          74 PVRHARDDAVYECVAENGV   92 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~   92 (111)
                      ++.. .|+|.|.|.+.+..
T Consensus        87 ~v~~-~D~G~Y~C~~~~~~  104 (220)
T 1pz5_B           87 NLRA-EDTGIYYCTRGGAV  104 (220)
T ss_dssp             SCCG-GGCEEEEEEEECTT
T ss_pred             cCCH-HHCEEEEEEEecCC
Confidence            9998 99999999999864

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=98.73  E-value=2.2e-07  Score=50.91  Aligned_cols=77  Identities=13%  Similarity=0.189  Sum_probs=53.1

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--ee---c-c-------CCCCceEEEeC-CCCCeEEEEccCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KR---V-S-------GTQSRYMVQEF-PPGGSLLRIEPVRHA   78 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~---~-~-------~~~~~~~~~~~-~~~~~~l~~~~~~~~   78 (111)
                      +.+.+..+.+.+|++++|.|...+.....+.|++..  ..   + .       ....|+..... ......|.|.+++. 
T Consensus         4 v~Q~p~~v~v~~G~~v~L~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~-   82 (194)
T 1lp9_E            4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQL-   82 (194)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCG-
T ss_pred             cEecCCEEEEecCCCEEEEEEeCCCCCceEEEEEeCCCCCeEEEEEEcCCCCcccCCCeEEEecCCCCEEEEEEcccCc-
Confidence            445567788999999999999877666689998753  21   1 0       01245544311 11223499999998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|+|.|.|.+.+
T Consensus        83 ~Dsg~Y~C~~~~   94 (194)
T 1lp9_E           83 SDSALYYCALFL   94 (194)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccCeeEEEEEec
Confidence            999999999876

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.73  E-value=1.6e-07  Score=53.57  Aligned_cols=75  Identities=23%  Similarity=0.378  Sum_probs=51.8

Q ss_pred             cceeeecCCcEEEEEEEeccC--CCeEEEEECC--eecc----------------CCCCceEEEeCC-CCCeEEEEccCC
Q psy2442          18 RNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KRVS----------------GTQSRYMVQEFP-PGGSLLRIEPVR   76 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~----------------~~~~~~~~~~~~-~~~~~l~~~~~~   76 (111)
                      ..+.+..|++++|.|...+.+  .+.+.|++..  ..+.                ....|+...... .....|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (257)
T 3bn9_D            8 GGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLR   87 (257)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCC
Confidence            346788999999999998754  5689999753  1110                012455544321 133459999999


Q ss_pred             CCCCCeEEEEEeeeCCC
Q psy2442          77 HARDDAVYECVAENGVG   93 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~~   93 (111)
                      . .|+|.|.|.+.+..+
T Consensus        88 ~-~DsG~Y~C~~~~~~g  103 (257)
T 3bn9_D           88 A-EDTAVYYCARPYLTY  103 (257)
T ss_dssp             G-GGCEEEEEEEECCSS
T ss_pred             h-hhCEEEEEEEecCCC
Confidence            8 999999999988653

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.72  E-value=4.6e-08  Score=53.86  Aligned_cols=85  Identities=13%  Similarity=0.174  Sum_probs=49.8

Q ss_pred             ecCCCeeEEcCcceeeecCCcEEEEEEEeccC-C-CeEEEEECCeeccCCCCceE-EEeCCCCC---eEEEEccCCCCCC
Q psy2442           7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDP-I-PVIQWRKNGKRVSGTQSRYM-VQEFPPGG---SLLRIEPVRHARD   80 (111)
Q Consensus         7 v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~-~~~~w~~~~~~~~~~~~~~~-~~~~~~~~---~~l~~~~~~~~~d   80 (111)
                      +..+|.+...+.......|+.+.|.|.+.+.+ . ..+.|+++|..+... .... ....++..   ..|.+..... .|
T Consensus       106 ~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~-~~~~~~~~~~g~~~~~s~l~i~~~~~-~~  183 (207)
T 2vol_A          106 RPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENY-KNTQPIMDTDGSYFVYSKLNVQKSNW-EA  183 (207)
T ss_dssp             CCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCE-EECCCEECTTSCEEEEEEEEEEHHHH-SS
T ss_pred             CCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCc-ccCCceECCCCCEEEEEEEEECHHHc-CC
Confidence            34566665433332233589999999998854 4 389999999876431 1110 11111110   1244444443 57


Q ss_pred             CeEEEEEeeeCCC
Q psy2442          81 DAVYECVAENGVG   93 (111)
Q Consensus        81 ~g~y~c~~~~~~~   93 (111)
                      .|.|.|.+.|...
T Consensus       184 ~g~ytC~a~n~~l  196 (207)
T 2vol_A          184 GNTFTCSVLHEGL  196 (207)
T ss_dssp             CCEEEEEEECTTS
T ss_pred             CCEEEEEEECCCC
Confidence            8999999999754

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.72  E-value=1.5e-07  Score=51.91  Aligned_cols=77  Identities=17%  Similarity=0.235  Sum_probs=53.7

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--eecc---------CCCCceEEEeC-C-CCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KRVS---------GTQSRYMVQEF-P-PGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~~---------~~~~~~~~~~~-~-~~~~~l~~~~~~~~~   79 (111)
                      +.+.+..+.+..|++++|.|...+.. +.+.|++..  ..+.         ....|+..... . .....|.|.+++. .
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~-~   81 (207)
T 1ypz_E            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQL-E   81 (207)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCG-G
T ss_pred             cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCH-H
Confidence            34566677899999999999987654 489999743  1110         01245555432 1 1334599999998 9


Q ss_pred             CCeEEEEEeeeC
Q psy2442          80 DDAVYECVAENG   91 (111)
Q Consensus        80 d~g~y~c~~~~~   91 (111)
                      |+|.|.|.+.+.
T Consensus        82 D~G~Y~C~~~~~   93 (207)
T 1ypz_E           82 DSGTYFCAADTW   93 (207)
T ss_dssp             GCEEEEEEEECB
T ss_pred             HCEEEEEEEecC
Confidence            999999999875

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.72  E-value=4.3e-07  Score=50.34  Aligned_cols=74  Identities=19%  Similarity=0.414  Sum_probs=49.7

Q ss_pred             CcceeeecCCcEEEEEEEeccC--CCeEEEEECCe--ecc------------------CCCCceEEEeCC-CCCeEEEEc
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP--IPVIQWRKNGK--RVS------------------GTQSRYMVQEFP-PGGSLLRIE   73 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~~~------------------~~~~~~~~~~~~-~~~~~l~~~   73 (111)
                      +..+.+..|++++|.|...+.+  .+.+.|++...  ...                  ....|+.+.... .....|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   86 (221)
T 3m8o_H            7 SGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMN   86 (221)
T ss_dssp             ESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEEC
T ss_pred             cCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEEC
Confidence            3346788999999999988643  56899987321  100                  012455443211 123359999


Q ss_pred             cCCCCCCCeEEEEEeeeC
Q psy2442          74 PVRHARDDAVYECVAENG   91 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~   91 (111)
                      ++.. .|+|.|.|.+.+.
T Consensus        87 ~v~~-~DsG~Y~C~~~~~  103 (221)
T 3m8o_H           87 SLKS-DDTAMYYCVIRGD  103 (221)
T ss_dssp             SCCG-GGCEEEEEEEESC
T ss_pred             CCCH-HHCEEEEEEEECC
Confidence            9998 9999999999875

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.71  E-value=5.2e-07  Score=50.66  Aligned_cols=78  Identities=17%  Similarity=0.333  Sum_probs=53.6

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccC--CCeEEEEECC--ee---c-c-------CCCCceEEEeC-CCCCeEEEEccCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KR---V-S-------GTQSRYMVQEF-PPGGSLLRIEPVR   76 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~---~-~-------~~~~~~~~~~~-~~~~~~l~~~~~~   76 (111)
                      +.+.+..+.+..|++++|.|...+.+  ...+.|++..  ..   + .       ....|+..... ......|.|.+++
T Consensus         4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   83 (229)
T 1hxm_A            4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (229)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             cEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCC
Confidence            34566777899999999999987543  3579998742  11   1 0       11246655432 1133459999999


Q ss_pred             CCCCCeEEEEEeeeC
Q psy2442          77 HARDDAVYECVAENG   91 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~   91 (111)
                      . .|+|.|.|.+.+.
T Consensus        84 ~-~Dsg~Y~C~~~~~   97 (229)
T 1hxm_A           84 E-RDEGSYYCACDTL   97 (229)
T ss_dssp             G-GGCEEEEEEEECC
T ss_pred             H-hHCeEEEEEEecC
Confidence            8 9999999998875

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.71  E-value=2e-07  Score=53.21  Aligned_cols=76  Identities=20%  Similarity=0.325  Sum_probs=52.6

Q ss_pred             cCcceeeecCCcEEEEEEEeccC--CCeEEEEECC--eec------cC----------CCCceEEEeCC-CCCeEEEEcc
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KRV------SG----------TQSRYMVQEFP-PGGSLLRIEP   74 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~------~~----------~~~~~~~~~~~-~~~~~l~~~~   74 (111)
                      .+..+.+..|++++|.|...+.+  .+.+.|++..  ..+      ..          ...|+.+.... .....|.|.+
T Consensus        12 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   91 (261)
T 2xqy_G           12 QPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS   91 (261)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence            34556788999999999998765  5689999752  211      00          12455544211 1234599999


Q ss_pred             CCCCCCCeEEEEEeeeCC
Q psy2442          75 VRHARDDAVYECVAENGV   92 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~~   92 (111)
                      ++. .|+|.|.|.+.+..
T Consensus        92 v~~-~DsG~Y~C~~~~~~  108 (261)
T 2xqy_G           92 LTS-EDSAVYYCGRLGYV  108 (261)
T ss_dssp             CCG-GGCEEEEEEEECTT
T ss_pred             CCc-ccCeEEEEEEecCC
Confidence            998 99999999998853

>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ...

Probab=98.71  E-value=2.8e-07  Score=51.84  Aligned_cols=77  Identities=23%  Similarity=0.359  Sum_probs=52.7

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--eec------cC-----CCCceEEEe-CCCCCeEEEEccCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KRV------SG-----TQSRYMVQE-FPPGGSLLRIEPVRHA   78 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~------~~-----~~~~~~~~~-~~~~~~~l~~~~~~~~   78 (111)
                      +.+.+..+.+..|++++|.|...+.....+.|++..  ..+      ..     ...|+.... .......|.|.+++. 
T Consensus         4 v~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~-   82 (229)
T 2q86_A            4 VEQSPQSLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHSTLHITATLL-   82 (229)
T ss_dssp             EEEECSEEEEETTCCEEEEEEECCSCCSCEEEEEECTTCCEEEEEEECSSEEEEEETTEEEEEETTTTEEEEEECSCCG-
T ss_pred             eEECCCEEEEecCCCEEEEEEECCCCCcEEEEEEECCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEcccCc-
Confidence            345566678999999999999876655689999742  211      00     023454432 111234599999998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      .|+|.|.|.+.+
T Consensus        83 ~Dsg~Y~C~~~~   94 (229)
T 2q86_A           83 DDTATYFCVVGD   94 (229)
T ss_dssp             GGCEEEEEEESC
T ss_pred             ccCccEEEEEEe
Confidence            999999999865

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.70  E-value=2.2e-08  Score=55.19  Aligned_cols=79  Identities=13%  Similarity=0.175  Sum_probs=51.1

Q ss_pred             EcCccee-eecCCcEEEEEEEeccC---C-CeEEEEECCeeccCCCCceEEEeCCC---CCeEEEEccCCCCCCCeEEEE
Q psy2442          15 LRPRNQA-VKAGGITSFYCIARGDP---I-PVIQWRKNGKRVSGTQSRYMVQEFPP---GGSLLRIEPVRHARDDAVYEC   86 (111)
Q Consensus        15 ~~~~~~~-~~~g~~~~l~c~~~~~~---~-~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~d~g~y~c   86 (111)
                      ..+.... +..|+++.|.|.+.+.+   . ..+.|++++..+.............+   ....|.|.++.. .|.|.|.|
T Consensus         7 ~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C   85 (207)
T 2vol_A            7 FPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDW-LNGKEFKC   85 (207)
T ss_dssp             ECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHH-HTTCCEEE
T ss_pred             eCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHc-CCCCEEEE
Confidence            3444333 77899999999998874   2 38999999876532100000000000   113478888887 89999999


Q ss_pred             EeeeCCCc
Q psy2442          87 VAENGVGD   94 (111)
Q Consensus        87 ~~~~~~~~   94 (111)
                      .+.|..+.
T Consensus        86 ~a~~~~~~   93 (207)
T 2vol_A           86 RVNSAAFP   93 (207)
T ss_dssp             EEECTTCS
T ss_pred             EEEccCCC
Confidence            99997664

>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1

Probab=98.70  E-value=1.1e-07  Score=47.68  Aligned_cols=78  Identities=12%  Similarity=0.174  Sum_probs=51.4

Q ss_pred             EcCcceeeecCCcEEEEEEEeccC--CCeEEEEECC--eec----c--C-C-------CCceEEEeC-CCCCeEEEEccC
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KRV----S--G-T-------QSRYMVQEF-PPGGSLLRIEPV   75 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~----~--~-~-------~~~~~~~~~-~~~~~~l~~~~~   75 (111)
                      +.+..+.+.+|++++|.|...+..  ...+.|++..  ..+    .  . .       ..|+..... ......|.|.++
T Consensus         4 q~p~~v~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   83 (114)
T 1u9k_A            4 LEEERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDL   83 (114)
T ss_dssp             -CCEEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSC
T ss_pred             cCCccEEEeCCCcEEEEeEecCcccCCceEEEEEeCCCCCCEEEEEEcCCCCccccccCCcEEEEecCcCCEEEEEECCC
Confidence            345567889999999999986532  4579999852  211    0  0 0       134444321 112345999999


Q ss_pred             CCCCCCeEEEEEeeeCCC
Q psy2442          76 RHARDDAVYECVAENGVG   93 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~~~   93 (111)
                      +. +|+|.|.|.+.+..+
T Consensus        84 ~~-~Dsg~Y~C~~~~~~~  100 (114)
T 1u9k_A           84 QV-TDSGLYRCVIYHPPN  100 (114)
T ss_dssp             CG-GGCEEEEEEEECTTS
T ss_pred             Ch-HHCEEEEEEEecCCC
Confidence            98 999999999987653

>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}

Probab=98.70  E-value=1e-06  Score=49.53  Aligned_cols=76  Identities=20%  Similarity=0.305  Sum_probs=52.9

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--CeeccC---------CCCceEEEe-CCCCCeEEEEccCCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVSG---------TQSRYMVQE-FPPGGSLLRIEPVRHARD   80 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~~---------~~~~~~~~~-~~~~~~~l~~~~~~~~~d   80 (111)
                      +.+.+..+.+.+|++++|.|...+. ...+.|++.  +..+..         ...|+.... .......|.|.+++. +|
T Consensus         4 V~Q~p~~v~v~~G~sVtL~C~~s~~-~~~v~Wyrq~pg~~~~~l~~~~~~~~~~~Rfs~~~~~~~~~~sLtI~~lq~-~D   81 (229)
T 3mbe_C            4 VEQNPPALSLYEGADSGLRCNFSTT-MKSVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNSKERYSTLHIKDAQL-ED   81 (229)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSC-CSCEEEEEECSSSCBCCCEEESSEEEEETTEEEEEETTTTEEEEEECSCCS-TT
T ss_pred             EEEcCCEEEEEcCCCEEEEEEEeCC-CcEEEEEEECCCCCcEEEEEeCCCCccCCCEEEEECCCCCEEEEEEECCcc-cC
Confidence            3456667889999999999998776 568999974  222110         123454432 122335599999998 99


Q ss_pred             CeEEEEEeee
Q psy2442          81 DAVYECVAEN   90 (111)
Q Consensus        81 ~g~y~c~~~~   90 (111)
                      +|.|.|.+..
T Consensus        82 SG~Y~Ca~~~   91 (229)
T 3mbe_C           82 SGTYFCAAED   91 (229)
T ss_dssp             CBEEEEEEEC
T ss_pred             CCCEEEEEEe
Confidence            9999999875

>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}

Probab=98.70  E-value=8.1e-08  Score=49.86  Aligned_cols=88  Identities=18%  Similarity=0.193  Sum_probs=56.3

Q ss_pred             cCcceeeecCCcEEEEEEEe-ccCCCeEEEEECC--ee---c---c--C--------C-CCceEEEeCCCCCeEEEEccC
Q psy2442          16 RPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNG--KR---V---S--G--------T-QSRYMVQEFPPGGSLLRIEPV   75 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~--~~---~---~--~--------~-~~~~~~~~~~~~~~~l~~~~~   75 (111)
                      .+..+.+.+|++++|.|... +.....+.|++..  ..   +   .  .        . ..|+...... ....|.|.++
T Consensus         5 ~p~~v~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~Rf~~~~~~-~~~~L~I~~~   83 (137)
T 3bdb_A            5 ELHVKTVKRGENVTMECSMSKVTNKNNLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVND-QKFDLNIIGA   83 (137)
T ss_dssp             BCEECCCCTTCEECCCCBCTTCCCGGGBEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESS-SBEEEEEESC
T ss_pred             CCCeEEEcCCCCEEEEeecCCCcCcceEEEEEECCCCCCEEEEEEEcCCCcceecCcccCCcEEEEecC-CEEEEEECCC
Confidence            34556788999999999986 5555579998742  11   1   0  0        0 2455554322 3446999999


Q ss_pred             CCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          76 RHARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      +. +|+|.|.|.+.+...........|.|.
T Consensus        84 ~~-~Dsg~Y~C~~~~~~~~~fg~GT~L~V~  112 (137)
T 3bdb_A           84 RE-DDGGEYFCGEVEGIIIKFTSGTRLQFE  112 (137)
T ss_dssp             CS-TTCEEEEEEEECSSCEEEEEEEEECCC
T ss_pred             CH-HHCEEEEEEEccCCeEEECCCEEEEEE
Confidence            98 999999999887532212233445444

>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 4e41_D 4e42_A 3rug_E* 3axl_A

Probab=98.69  E-value=3.6e-07  Score=50.59  Aligned_cols=76  Identities=18%  Similarity=0.289  Sum_probs=52.4

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--eecc---------CCCCceEEEe-CCCCCeEEEEccCCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KRVS---------GTQSRYMVQE-FPPGGSLLRIEPVRHARD   80 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~~---------~~~~~~~~~~-~~~~~~~l~~~~~~~~~d   80 (111)
                      +.+.+..+.+.+|++++|.|...+. ...+.|++..  ..+.         ....|+.... .......|.|.+++. +|
T Consensus         6 V~Q~p~~v~v~~G~svtL~C~~s~~-~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~-~D   83 (205)
T 3qjh_A            6 VEQSPSALSLHEGTGSALRCNFTTT-MRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDSKERYSTLHIRDAQL-ED   83 (205)
T ss_dssp             BEEECSEEEEETTCCEEEEEECSSC-EEEEEEEEEC-CCCEEEEEEESSEEEEETTEEEEEETTTTEEEEEECSCCG-GG
T ss_pred             EEEeCCEEEEeCCCCEEEEEEEECC-cceEEEEEECCCCCcEEEEEECCCCccCCCEEEEEcCCCCEEEEEEecccc-cc
Confidence            4456667889999999999998766 4578999853  1110         0124554432 122345599999998 99


Q ss_pred             CeEEEEEeee
Q psy2442          81 DAVYECVAEN   90 (111)
Q Consensus        81 ~g~y~c~~~~   90 (111)
                      +|.|.|.+..
T Consensus        84 sG~Y~Cav~~   93 (205)
T 3qjh_A           84 SGTYFCAAEA   93 (205)
T ss_dssp             CEEEEEEEEE
T ss_pred             CeEEEEEEEc
Confidence            9999999873

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.69  E-value=9.3e-07  Score=49.17  Aligned_cols=85  Identities=15%  Similarity=0.259  Sum_probs=51.5

Q ss_pred             eEEecC----CCeeEEcCcceeeecCCcEEEEEEEecc-CCC-eEEEEE-CCeeccCC--------CCceEEEeCCCCCe
Q psy2442           4 KVRFLD----PPEITLRPRNQAVKAGGITSFYCIARGD-PIP-VIQWRK-NGKRVSGT--------QSRYMVQEFPPGGS   68 (111)
Q Consensus         4 ~l~v~~----~p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~-~~~w~~-~~~~~~~~--------~~~~~~~~~~~~~~   68 (111)
                      +|.|..    +|.+........+..|+.++|.|.+.+. |.+ .+.|++ +|..+...        ...+..      ..
T Consensus       116 ~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~------~s  189 (223)
T 1dee_B          116 LVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAA------TS  189 (223)
T ss_dssp             EEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEE------EE
T ss_pred             EEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeEEE------EE
Confidence            566653    3444322111234689999999999886 666 899999 77765420        011111      12


Q ss_pred             EEEEccCCC-CCCCeEEEEEeeeCCCc
Q psy2442          69 LLRIEPVRH-ARDDAVYECVAENGVGD   94 (111)
Q Consensus        69 ~l~~~~~~~-~~d~g~y~c~~~~~~~~   94 (111)
                      .|.+..... ..|.|.|.|.+.|..+.
T Consensus       190 ~L~i~~~~~~~~d~g~y~C~v~n~~~~  216 (223)
T 1dee_B          190 QVLLPSKDVAQGTNEHVVCKVQHPNGN  216 (223)
T ss_dssp             EEEEECTTTTSTTCCEEEEEEECTTCC
T ss_pred             EEEEcHHHhccCCCCEEEEEEEeCCCC
Confidence            255554431 03579999999998765

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}

Probab=98.68  E-value=1.5e-07  Score=51.86  Aligned_cols=76  Identities=22%  Similarity=0.333  Sum_probs=51.0

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc------C-----CCCceEEEe-CCCCCeEEEEccCCCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS------G-----TQSRYMVQE-FPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~------~-----~~~~~~~~~-~~~~~~~l~~~~~~~~~   79 (111)
                      .+.+..+.+.+|++++|.|...+.....+.|++.  +..+.      .     ...|+.... .......|.|.+++. +
T Consensus         4 ~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~-~   82 (199)
T 3gsn_A            4 EQSPQSLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLYIKGSQP-E   82 (199)
T ss_dssp             EEECSEEEEETTCCCEEEEECCCTTCCCEEEEEECTTSCCEEEEEECSTTCCCEETTEECCCBTTTTEEEEEBSSCCG-G
T ss_pred             EECCCEEEEeCCCCEEEEEEEcCCCCCEEEEEEECCCCCcEEEEEECCCCCccccCceEEEECCCCCEEEEEEccCcc-c
Confidence            4556667899999999999987755568999974  22110      0     013443321 111234588999998 9


Q ss_pred             CCeEEEEEeee
Q psy2442          80 DDAVYECVAEN   90 (111)
Q Consensus        80 d~g~y~c~~~~   90 (111)
                      |+|.|.|.+..
T Consensus        83 DsG~Y~Ca~~~   93 (199)
T 3gsn_A           83 DSATYLCARNT   93 (199)
T ss_dssp             GCEEEEEEEES
T ss_pred             CCccEEEEEcc
Confidence            99999999864

>1jtp_A Single-domain antibody; immunoglobulin, heavy chain antibody, VHH, interface, binding, antibody, hydrolase; 1.90A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1jto_A 1mel_A 2x89_A

Probab=98.67  E-value=2.5e-06  Score=44.85  Aligned_cols=73  Identities=22%  Similarity=0.407  Sum_probs=49.6

Q ss_pred             cceeeecCCcEEEEEEEecc--CCCeEEEEECC--eec------cC----------CCCceEEEeCC-CCCeEEEEccCC
Q psy2442          18 RNQAVKAGGITSFYCIARGD--PIPVIQWRKNG--KRV------SG----------TQSRYMVQEFP-PGGSLLRIEPVR   76 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~--~~~------~~----------~~~~~~~~~~~-~~~~~l~~~~~~   76 (111)
                      ..+.+.+|++++|.|...+.  ....+.|++..  ..+      ..          ...|+...... .....|.|.+++
T Consensus         8 ~~~~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~   87 (148)
T 1jtp_A            8 GGGSVQAGGSLRLSCAASGYTIGPYCMGWFRQAPGKEREGVAAINMGGGITYYADSVKGRFTISQDNAKNTVYLLMNSLE   87 (148)
T ss_dssp             CCEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEECCTTSEEEEEECSCC
T ss_pred             CCEEEecCCCEEEEEEEeCccCCCCEEEEEEECCCCCcEEEEEEECCCCceeeCCccCCcEEEEEcCCCCEEEEEECcCC
Confidence            34678899999999998753  24579998742  111      00          12456555322 133459999999


Q ss_pred             CCCCCeEEEEEeeeC
Q psy2442          77 HARDDAVYECVAENG   91 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~   91 (111)
                      . +|+|.|.|.+.+.
T Consensus        88 ~-~Dsg~Y~C~~~~~  101 (148)
T 1jtp_A           88 P-EDTAIYYCAADST  101 (148)
T ss_dssp             G-GGCEEEEEEEECC
T ss_pred             h-hHCEEEEEEEEcC
Confidence            8 9999999998763

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.67  E-value=6.5e-07  Score=49.16  Aligned_cols=99  Identities=16%  Similarity=0.193  Sum_probs=57.2

Q ss_pred             EEecCCCeeEEcCcceeeecCCcEEEEEEE-eccCCCeEEEEECCeeccCCCCceEEEeCCC---CCeEEEEccCCCCCC
Q psy2442           5 VRFLDPPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP---GGSLLRIEPVRHARD   80 (111)
Q Consensus         5 l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~d   80 (111)
                      +.+..++.....+.......+....+.|.. .+.|++.+.|++++......  .......++   ..+.|.|..+.. .|
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~~s~L~i~~~~~-~d  192 (225)
T 4fmk_A          116 LRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKD--TQEPGIQAGTVTIISRYSLVPVGR-AD  192 (225)
T ss_dssp             EEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEE--EEEECSSTTCEEEEEEEEECCCGG-GT
T ss_pred             eeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCC--cceEEecCCCEEEEEEEEEeeCCH-HH
Confidence            334445554444444445566677776665 55677789998876543211  000100010   113488888888 99


Q ss_pred             CeEEEEEeeeCCCce-EeeEEEEEEec
Q psy2442          81 DAVYECVAENGVGDA-VSAEASLTVYE  106 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~-~~~~~~l~~~~  106 (111)
                      .|.|.|.+.|..+.. ....+.|.|.+
T Consensus       193 ~g~YtC~a~N~~~~~~~~~~v~l~V~Y  219 (225)
T 4fmk_A          193 GVKVTCRVEHESFEEPILLPVTLSVRY  219 (225)
T ss_dssp             TCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred             CCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence            999999999987643 23444554443

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=98.67  E-value=1.7e-07  Score=53.03  Aligned_cols=77  Identities=18%  Similarity=0.297  Sum_probs=53.0

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--e--e-cc-----------CCCCceEEEeCCCCCeEEEEccCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--K--R-VS-----------GTQSRYMVQEFPPGGSLLRIEPVR   76 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~-~~-----------~~~~~~~~~~~~~~~~~l~~~~~~   76 (111)
                      +.+.+..+.+..|+++.|.|... .+.+.+.|++..  .  . +.           ....|+...........|.|.++.
T Consensus         6 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~   84 (252)
T 1oga_E            6 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   84 (252)
T ss_dssp             EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             ceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCC
Confidence            44556667899999999999985 346789999852  1  1 10           012455543211123459999999


Q ss_pred             CCCCCeEEEEEeeeC
Q psy2442          77 HARDDAVYECVAENG   91 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~   91 (111)
                      . .|+|.|.|.+.+.
T Consensus        85 ~-~D~G~Y~C~~~~~   98 (252)
T 1oga_E           85 K-NPTAFYLCASSSR   98 (252)
T ss_dssp             S-CCCEEEEEEEESS
T ss_pred             h-hhCEEEEEEEecC
Confidence            8 9999999999875

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.67  E-value=1.1e-07  Score=57.77  Aligned_cols=84  Identities=15%  Similarity=0.194  Sum_probs=55.3

Q ss_pred             CCee-EEcCccee-eecCCcEEEEEEEeccC----CCeEEEEECCeeccCCCCceEEEeCCC---CCeEEEEccCCCCCC
Q psy2442          10 PPEI-TLRPRNQA-VKAGGITSFYCIARGDP----IPVIQWRKNGKRVSGTQSRYMVQEFPP---GGSLLRIEPVRHARD   80 (111)
Q Consensus        10 ~p~~-~~~~~~~~-~~~g~~~~l~c~~~~~~----~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~d   80 (111)
                      +|.+ ...+.... +..|+.+.|.|.+.+.+    .+.+.|++++..+............++   ....|.|.++.. .|
T Consensus       238 ~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~d  316 (444)
T 1igt_B          238 GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDW-MS  316 (444)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHH-HT
T ss_pred             CceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHh-cc
Confidence            4554 33333322 47899999999998874    358999999988753211111111010   123488888887 99


Q ss_pred             CeEEEEEeeeCCCc
Q psy2442          81 DAVYECVAENGVGD   94 (111)
Q Consensus        81 ~g~y~c~~~~~~~~   94 (111)
                      .|.|.|.+.|..+.
T Consensus       317 ~G~Y~C~a~n~~~~  330 (444)
T 1igt_B          317 GKEFKCKVNNKDLP  330 (444)
T ss_dssp             TCEEEEEEECTTCS
T ss_pred             CCcEEEEEEcCCCC
Confidence            99999999998764

>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C

Probab=98.65  E-value=5.7e-07  Score=45.23  Aligned_cols=74  Identities=20%  Similarity=0.363  Sum_probs=49.9

Q ss_pred             CcceeeecCCcEEEEEEEeccC--CCeEEEEECC--eec------cC----------CCCceEEEeCC-CCCeEEEEccC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KRV------SG----------TQSRYMVQEFP-PGGSLLRIEPV   75 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~------~~----------~~~~~~~~~~~-~~~~~l~~~~~   75 (111)
                      +..+.+.+|++++|.|...+..  ...+.|++..  ..+      ..          ...|+...... .....|.|.++
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   86 (117)
T 2yc1_A            7 SGGGLVQPGGSLRLSCTGSGFTFDNYAMHWLRQVPGEGLEWVSGISRSSGDIDYADSVKGRFTISRDDAKKTLSLQMNSL   86 (117)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEcCCCeEEEEEEecCcccCCCeEEEEEECCCCCcEEEEEEccCCCceeeCcccCCeEEEEEeCCCCEEEEEECCC
Confidence            3346788999999999987532  4579998742  111      00          12355554321 23345999999


Q ss_pred             CCCCCCeEEEEEeeeC
Q psy2442          76 RHARDDAVYECVAENG   91 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~   91 (111)
                      +. +|+|.|.|.+.+.
T Consensus        87 ~~-~Dsg~Y~C~~~~~  101 (117)
T 2yc1_A           87 RA-EDTAVYYCARGGV  101 (117)
T ss_dssp             CG-GGCEEEEEEEEET
T ss_pred             CH-HHCEEEEEEEEeC
Confidence            98 9999999998764

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...

Probab=98.65  E-value=4.9e-07  Score=50.14  Aligned_cols=77  Identities=19%  Similarity=0.383  Sum_probs=52.2

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--eecc------C----CCCceEEEeC-CCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KRVS------G----TQSRYMVQEF-PPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~~------~----~~~~~~~~~~-~~~~~~l~~~~~~~~~   79 (111)
                      +.+.+..+.+.+|++++|.|...+.....+.|++..  ..+.      .    ...|+..... ......|.|.+++. +
T Consensus         5 V~Q~p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~-~   83 (208)
T 4ei6_A            5 VQQSPESLSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASLHVSLHIRDSQP-S   83 (208)
T ss_dssp             EEEECSEEEEETTCCEECEEEECCTTEEEEEEEEECTTSCCEEEEECCSSEEEEETTEEEEEBTTTTBC-CEECSCCG-G
T ss_pred             EEEeCCEEEEECCCCEEEEEEEcCCCCceEEEEEeCCCCCcEEEEEECCCCcccCCcEEEEEcCCCCEEEEEEEeCcc-c
Confidence            456667788999999999999877544578999742  1110      0    1245544321 22334589999998 9


Q ss_pred             CCeEEEEEeee
Q psy2442          80 DDAVYECVAEN   90 (111)
Q Consensus        80 d~g~y~c~~~~   90 (111)
                      |+|.|.|.+..
T Consensus        84 DsG~Y~Ca~~~   94 (208)
T 4ei6_A           84 DSALYFCAASE   94 (208)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCCcEEEEEec
Confidence            99999999864

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=98.65  E-value=3.7e-07  Score=50.35  Aligned_cols=77  Identities=25%  Similarity=0.321  Sum_probs=52.8

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--ee---c---cC-----CCCceEEEeC-CCCCeEEEEccCCCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KR---V---SG-----TQSRYMVQEF-PPGGSLLRIEPVRHAR   79 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~---~---~~-----~~~~~~~~~~-~~~~~~l~~~~~~~~~   79 (111)
                      .+.+..+.+..|++++|.|...+.....+.|++..  ..   +   ..     ...|+..... ......|.|.+++. +
T Consensus         4 ~q~p~~v~v~~G~~v~L~C~~s~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~-~   82 (203)
T 2bnu_A            4 TQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP-G   82 (203)
T ss_dssp             EEECSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG-G
T ss_pred             EEcCCEEEEeCCCCEEEEEEECCCCcceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCc-c
Confidence            45566778999999999999876554579998742  11   1   00     1245554321 11334599999998 9


Q ss_pred             CCeEEEEEeeeC
Q psy2442          80 DDAVYECVAENG   91 (111)
Q Consensus        80 d~g~y~c~~~~~   91 (111)
                      |+|.|.|.+.+.
T Consensus        83 Dsg~Y~C~~~~~   94 (203)
T 2bnu_A           83 DSATYLCAVRPT   94 (203)
T ss_dssp             GCEEEEEEEEEC
T ss_pred             cCeEEEEEEEcC
Confidence            999999998763

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=98.65  E-value=6.4e-07  Score=45.27  Aligned_cols=74  Identities=20%  Similarity=0.350  Sum_probs=49.6

Q ss_pred             CcceeeecCCcEEEEEEEeccC--CCeEEEEECCe--e---c---c----------CCCCceEEEeCC-CCCeEEEEccC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP--IPVIQWRKNGK--R---V---S----------GTQSRYMVQEFP-PGGSLLRIEPV   75 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~---~---~----------~~~~~~~~~~~~-~~~~~l~~~~~   75 (111)
                      +..+.+..|++++|.|...+..  ...+.|++...  .   +   .          ....|+...... .....|.|.++
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   86 (120)
T 1n4x_H            7 SGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNL   86 (120)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEcCCCeEEEEEEecCcccCCcEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            3346888999999999987532  45799987431  1   1   0          012455554221 13345999999


Q ss_pred             CCCCCCeEEEEEeeeC
Q psy2442          76 RHARDDAVYECVAENG   91 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~   91 (111)
                      +. +|+|.|.|.+.+.
T Consensus        87 ~~-~DsG~Y~C~~~~~  101 (120)
T 1n4x_H           87 KN-EDTATYFCVRDRH  101 (120)
T ss_dssp             CG-GGCEEEEEEEESS
T ss_pred             CH-HHCEEEEEEEEcc
Confidence            98 9999999998764

>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A

Probab=98.65  E-value=6.6e-07  Score=49.30  Aligned_cols=73  Identities=18%  Similarity=0.360  Sum_probs=49.9

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCeEEEEECC--ee---c-cCC------CCceEEEeC-CCCCeEEEEccCCCCCCCeE
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KR---V-SGT------QSRYMVQEF-PPGGSLLRIEPVRHARDDAV   83 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~---~-~~~------~~~~~~~~~-~~~~~~l~~~~~~~~~d~g~   83 (111)
                      +..+.+.+|++++|.|...+.....+.|++..  ..   + ...      ..|+..... ......|.|.+++. +|+|.
T Consensus         6 p~~~~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~-~Dsg~   84 (200)
T 2nw2_A            6 PTEMTATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLLKELQM-KDSAS   84 (200)
T ss_dssp             CSEEEEETTCCEEEEEECCCSSCCCEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCG-GGCEE
T ss_pred             CCeEEEccCCCEEEEEEECCCCCceEEEEEeCCCCCcEEEEEEcCCCcccCCceEEEecCCCCEEEEEECccCc-ccCCc
Confidence            55678899999999999876655689998743  11   1 000      245544321 21334599999998 99999


Q ss_pred             EEEEeee
Q psy2442          84 YECVAEN   90 (111)
Q Consensus        84 y~c~~~~   90 (111)
                      |.|.+.+
T Consensus        85 Y~C~~~~   91 (200)
T 2nw2_A           85 YLCAVQA   91 (200)
T ss_dssp             EEEEEC-
T ss_pred             EEEEEEc
Confidence            9999865

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.64  E-value=1.2e-06  Score=53.79  Aligned_cols=78  Identities=19%  Similarity=0.328  Sum_probs=53.6

Q ss_pred             EcCcceeeecCCcEEEEEEEeccC--CCeEEEEECC--eecc----------------CCCCceEEEeCC-CCCeEEEEc
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KRVS----------------GTQSRYMVQEFP-PGGSLLRIE   73 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~----------------~~~~~~~~~~~~-~~~~~l~~~   73 (111)
                      ..+..+.+..|++++|.|...+.+  .+.+.|++..  ..+.                ....|+...... .....|.|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   85 (475)
T 1iga_A            6 EQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLS   85 (475)
T ss_pred             ccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEEC
Confidence            345567889999999999987754  4589999852  1110                012355444321 123459999


Q ss_pred             cCCCCCCCeEEEEEeeeCCC
Q psy2442          74 PVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~   93 (111)
                      ++.. .|+|.|.|.+.+..+
T Consensus        86 ~v~~-~D~G~Y~C~~~~~~~  104 (475)
T 1iga_A           86 SLRP-EDTAVYYCARDPYGG  104 (475)
T ss_pred             CCCh-hhCEEEEEEEeccCC
Confidence            9998 999999999988654

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.64  E-value=4e-08  Score=54.14  Aligned_cols=57  Identities=19%  Similarity=0.335  Sum_probs=43.6

Q ss_pred             eecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeC
Q psy2442          22 VKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENG   91 (111)
Q Consensus        22 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~   91 (111)
                      +..|++++|.|.+   +.+.+.|+++|..+...      ..   ....|.|..+.. .|+|.|.|.+.+.
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~------~~---~~~~L~i~~v~~-~DsG~Y~C~~~~~   71 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL------TE---DKKKWNLGSNAK-DPRGMYQCKGSQN   71 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE------ES---SCCCEEEEEGGG-CCEEEEEEESSSS
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC------CC---CCCeEEeCCCCc-CCCEEEEEEecCC
Confidence            3579999999988   67799999998876421      00   223488889998 9999999997553

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.64  E-value=1.4e-07  Score=53.80  Aligned_cols=76  Identities=25%  Similarity=0.473  Sum_probs=48.5

Q ss_pred             CCeeE-EcCcceeeecCCcEEEEEEEeccCCC--eEEEEECCeeccCC---------------CCceEEEeCCCCCeEEE
Q psy2442          10 PPEIT-LRPRNQAVKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGT---------------QSRYMVQEFPPGGSLLR   71 (111)
Q Consensus        10 ~p~~~-~~~~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~   71 (111)
                      +|.+. ..+....+..|+.++|.|.+.+.+++  .+.|+++|..+...               ...+..      ...|.
T Consensus       145 ~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~------~s~l~  218 (268)
T 3pl6_D          145 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSL------SSRLR  218 (268)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECTTEEECSSCEESSTTCTTCCEEE------EEEEE
T ss_pred             CCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCCCeEeccccccccccCCCCcEEE------EEEEE
Confidence            45443 23333345569999999999886654  89999998877432               011111      12255


Q ss_pred             EccCCCCCC-CeEEEEEeeeCC
Q psy2442          72 IEPVRHARD-DAVYECVAENGV   92 (111)
Q Consensus        72 ~~~~~~~~d-~g~y~c~~~~~~   92 (111)
                      +..... .| .|.|.|.+.|..
T Consensus       219 i~~~~~-~d~~g~YtC~v~~~~  239 (268)
T 3pl6_D          219 VSATFW-QNPRNHFRCQVQFYG  239 (268)
T ss_dssp             EEHHHH-SCTTCEEEEEEEECC
T ss_pred             EcHHHh-ccCCCEEEEEEEcCC
Confidence            665554 55 899999999864

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.64  E-value=2.1e-07  Score=53.58  Aligned_cols=74  Identities=18%  Similarity=0.316  Sum_probs=50.9

Q ss_pred             CcceeeecCCcEEEEEEEecc--CCCeEEEEECCe--ecc----------------CCCCceEEEeC-CCCCeEEEEccC
Q psy2442          17 PRNQAVKAGGITSFYCIARGD--PIPVIQWRKNGK--RVS----------------GTQSRYMVQEF-PPGGSLLRIEPV   75 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~--~~~----------------~~~~~~~~~~~-~~~~~~l~~~~~   75 (111)
                      +..+.+..|++++|.|...+.  +.+.+.|++...  .+.                ....|+..... ......|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            556788999999999998775  456899987421  110                00134444421 112345999999


Q ss_pred             CCCCCCeEEEEEeeeC
Q psy2442          76 RHARDDAVYECVAENG   91 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~   91 (111)
                      .. .|+|.|.|.+.+.
T Consensus        87 ~~-~DsG~Y~C~~~~~  101 (280)
T 3fku_X           87 RS-EDTAVYYCARSPS  101 (280)
T ss_dssp             CS-TTCEECCEEECSS
T ss_pred             Ch-hhCEEEEEEEecC
Confidence            98 9999999999886

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.64  E-value=4.7e-07  Score=51.32  Aligned_cols=74  Identities=20%  Similarity=0.437  Sum_probs=49.5

Q ss_pred             CcceeeecCCcEEEEEEEecc--CCCeEEEEECCe--e---c---c----------CCCCceEEEeCC-CCCeEEEEccC
Q psy2442          17 PRNQAVKAGGITSFYCIARGD--PIPVIQWRKNGK--R---V---S----------GTQSRYMVQEFP-PGGSLLRIEPV   75 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~--~---~---~----------~~~~~~~~~~~~-~~~~~l~~~~~   75 (111)
                      +..+.+..|++++|.|...+.  ....+.|++...  .   +   .          ....|+.+.... .....|.|.++
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (253)
T 3liz_H            7 SGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSL   86 (253)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            345678899999999998763  345789987421  1   0   0          112355444211 12344999999


Q ss_pred             CCCCCCeEEEEEeeeC
Q psy2442          76 RHARDDAVYECVAENG   91 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~   91 (111)
                      +. .|+|.|.|.+.+.
T Consensus        87 ~~-~DsG~Y~C~~~~~  101 (253)
T 3liz_H           87 KS-EDTAMYYCTRDPA  101 (253)
T ss_dssp             CG-GGCEEEEEEECCB
T ss_pred             Ch-hhCEEEEEEEecC
Confidence            98 9999999999875

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.63  E-value=2e-07  Score=50.41  Aligned_cols=56  Identities=13%  Similarity=0.164  Sum_probs=41.2

Q ss_pred             cCCcEEEEEEE-eccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          24 AGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        24 ~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      .+..+.|.|.+ .+ |.+.+.|++++..+...           ....+.+..  . .|.|.|.|.+.|..+.
T Consensus       114 ~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~~-----------~~~~l~~~~--~-~d~g~Y~C~a~N~~~~  170 (180)
T 2dru_A          114 ECSNATLTCEVLEG-TDVELKLYQGKEHLRSL-----------RQKTMSYQW--T-NLRAPFKCKAVNRVSQ  170 (180)
T ss_dssp             EGGGTEEEEECSSC-TTCEEEEEETTEEEEEE-----------SSSEEEEEC--S-CCSSCEEEEEEETTEE
T ss_pred             cCCCEEEEEEeCCC-CCCEEEEEECCeECcCC-----------CCCEEEEEE--h-hcCccEEEEEecCcCc
Confidence            44678999999 56 88899999998876410           222344432  4 7999999999998865

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.63  E-value=1.1e-07  Score=52.92  Aligned_cols=87  Identities=15%  Similarity=0.281  Sum_probs=52.1

Q ss_pred             eEEecC----CCeeEE-cCcceeeecCCcEEEEEEEecc-CCC-eEEEEECCeeccCCCCceEEEeCCC---CCeEEEEc
Q psy2442           4 KVRFLD----PPEITL-RPRNQAVKAGGITSFYCIARGD-PIP-VIQWRKNGKRVSGTQSRYMVQEFPP---GGSLLRIE   73 (111)
Q Consensus         4 ~l~v~~----~p~~~~-~~~~~~~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~   73 (111)
                      +|.|..    +|.+.. .+.. .+..|+.++|.|.+.+. |.+ .+.|++++..+....... ....++   ....|.|.
T Consensus       118 ~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~-~~~~~g~~~~~s~L~i~  195 (225)
T 1op3_H          118 VVTVSPASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPA-VLQSSGLYSLSSVVTVP  195 (225)
T ss_dssp             EEEEESCSCBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCC-EECTTSCEEEEEEEEEE
T ss_pred             EEecccCCCcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCc-eeCCCCCEEEEEEEEEe
Confidence            556654    344432 2222 34679999999999886 666 899999876532100000 000110   11237787


Q ss_pred             cCCCCCCCeEEEEEeeeCCCc
Q psy2442          74 PVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      .... .| |.|.|.+.|..+.
T Consensus       196 ~~~~-~~-g~Y~C~a~n~~~~  214 (225)
T 1op3_H          196 SSSL-GT-QTYICNVNHKPSN  214 (225)
T ss_dssp             GGGT-TC-CCCCEEEEEGGGT
T ss_pred             chhc-CC-CcEEEEEEcCCCC
Confidence            7776 67 9999999996543

>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution, anisotropic AN refinement, immune system; HET: NAG FUC; 1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B 1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B* 1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L 1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...

Probab=98.63  E-value=1.2e-06  Score=43.02  Aligned_cols=81  Identities=19%  Similarity=0.247  Sum_probs=47.7

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCCC-eEEEEccCCCCCCCeEEE
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGG-SLLRIEPVRHARDDAVYE   85 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~d~g~y~   85 (111)
                      .+|.+...+.. ....|+..+|.|.+.+..++  .+.|+++|..+... .........+.. .......+.. .+.+.|.
T Consensus         3 ~~P~V~v~~~~-~~~~~~~~~L~C~~~gfyP~~i~v~W~k~g~~~~~~-~~~~~~~~~dgty~~~s~l~v~~-~~~~~yt   79 (99)
T 1lk2_B            3 KTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKV-EMSDMSFSKDWSFYILAHTEFTP-TETDTYA   79 (99)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTC-EEEEEEECTTCCEEEEEEEEECC-CSSCCEE
T ss_pred             cCCEEEEEcCC-cccCCCCEEEEEEEEEEECCCcEEEEEECCEECCCc-eeCCeEECCCCcEEEEEEEEEeC-CCCCEEE
Confidence            35555543222 23457789999999997655  78999999887421 111122211111 1122224455 6778899


Q ss_pred             EEeeeCC
Q psy2442          86 CVAENGV   92 (111)
Q Consensus        86 c~~~~~~   92 (111)
                      |.+.+..
T Consensus        80 C~V~H~~   86 (99)
T 1lk2_B           80 CRVKHDS   86 (99)
T ss_dssp             EEEECTT
T ss_pred             EEEEcCC
Confidence            9998864

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.62  E-value=5.3e-07  Score=51.06  Aligned_cols=72  Identities=19%  Similarity=0.372  Sum_probs=49.2

Q ss_pred             ceeeecCCcEEEEEEEeccC--CCeEEEEECC--eecc----------------CCCCceEEEeCC-CCCeEEEEccCCC
Q psy2442          19 NQAVKAGGITSFYCIARGDP--IPVIQWRKNG--KRVS----------------GTQSRYMVQEFP-PGGSLLRIEPVRH   77 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~----------------~~~~~~~~~~~~-~~~~~l~~~~~~~   77 (111)
                      .+.+.+|++++|.|...+.+  .+.+.|++..  ..+.                ....++...... .....|.|.++..
T Consensus        11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   90 (256)
T 3umt_A           11 LELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTS   90 (256)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCc
Confidence            35688999999999988755  5689998732  1110                011344443211 1234499999998


Q ss_pred             CCCCeEEEEEeeeC
Q psy2442          78 ARDDAVYECVAENG   91 (111)
Q Consensus        78 ~~d~g~y~c~~~~~   91 (111)
                       .|+|.|.|.+.+.
T Consensus        91 -~DsG~Y~C~~~~~  103 (256)
T 3umt_A           91 -EDSAVYYCARDDR  103 (256)
T ss_dssp             -GGCEEEEEEECCS
T ss_pred             -ccCEEEEEEEccC
Confidence             9999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	111
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	9e-18
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	4e-16
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	7e-16
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-15
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-15
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	3e-15
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	9e-15
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-14
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	7e-14
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	9e-14
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-13
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	6e-13
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-12
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-12
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	4e-12
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	5e-12
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	6e-12
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	9e-12
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-11
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-11
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	3e-11
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	3e-11
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	3e-11
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	4e-11
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	5e-11
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	6e-11
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	8e-11
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	9e-11
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-10
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	2e-10
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	4e-10
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	7e-10
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	2e-09
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	2e-08
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	3e-08
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	8e-08
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	2e-07
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	2e-07
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	2e-07
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	5e-07
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	2e-06
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-06
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	3e-06
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	4e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	5e-06
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	3e-05
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	4e-05
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	5e-05
d1q0xl2	102	b.1.1.2 (L:108-212) Immunoglobulin light chain lam	7e-05
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	9e-05
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	1e-04
d2fcba1	85	b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3	3e-04
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	5e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	6e-04
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	7e-04
d1fp5a2	105	b.1.1.2 (A:439-543) Immunoglobulin heavy chain eps	0.001
d1cqka_	101	b.1.1.2 (A:) Immunoglobulin heavy chain gamma cons	0.002
d1l6xa2	102	b.1.1.2 (A:342-443) Immunoglobulin heavy chain gam	0.003
d1i1ca2	102	b.1.1.2 (A:342-443) Immunoglobulin heavy chain gam	0.004
d1k5nb_	100	b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapi	0.004

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 9e-18
 Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 6   RFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP 65
            + +  ++    R  AV A     F C A G+P+P ++W KNGK           +    
Sbjct: 3   YWTNTEKM--EKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 66  GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
             SL  I       D   Y CV EN  G   +    L V
Sbjct: 61  HWSL--IMESVVPSDKGNYTCVVENEYGSI-NHTYHLDV 96

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.7 bits (159), Expect = 4e-16
 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 10  PPEITLRPR--NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           PP +  R    N     G   +  C A G P P + W K+G+ +   +       F    
Sbjct: 3   PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 62

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           S L I       D+A Y C+AEN  G+   A   L V+ 
Sbjct: 63  SELTIRN-VDKNDEAEYVCIAENKAGEQ-DASIHLKVFA 99

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 65.3 bits (158), Expect = 7e-16
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 1/88 (1%)

Query: 17  PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVR 76
            ++   KAG +T  YC+   +P+    + KNGK V+G     + +     G  L  +   
Sbjct: 10  SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTL 69

Query: 77  HARDDAVYECVAENGVGDAVSAEASLTV 104
              +  VY C  +NGVG        LTV
Sbjct: 70  PEDEG-VYTCEVDNGVGKPQKHSLKLTV 96

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 2e-15
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
           P+I   P +Q V+AG     +    G       W K  K++  ++   +       GS L
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSEN--GSKL 58

Query: 71  RIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
            I   R       Y  + EN +G    A+ +LTV +  + P
Sbjct: 59  TILAAR-QEHCGCYTLLVENKLGSR-QAQVNLTVVDKPDPP 97

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 2e-15
 Identities = 24/88 (27%), Positives = 30/88 (34%), Gaps = 1/88 (1%)

Query: 17  PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVR 76
           P    V  G      C   G   P IQW K+G  V      Y+          L ++ V 
Sbjct: 3   PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62

Query: 77  HARDDAVYECVAENGVGDAVSAEASLTV 104
              D   Y C  E+G    +S    LTV
Sbjct: 63  -RSDAGRYWCQVEDGGETEISQPVWLTV 89

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (154), Expect = 3e-15
 Identities = 22/96 (22%), Positives = 30/96 (31%), Gaps = 3/96 (3%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ-SRYMVQEFPPGGS 68
            P    R +N  V AG   +F C A G  +   +    G  V         V       +
Sbjct: 2   TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
              +      RD   Y C+     G  +S  A L V
Sbjct: 61  SFNVVNTT-KRDAGKYRCMIRTEGGVGISNYAELVV 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 62.6 bits (151), Expect = 9e-15
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 8   LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           ++ P+I  R ++Q V  G    F     G P P  +W KNG ++  +   Y         
Sbjct: 2   MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVC 61

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
            L+  +      D A     A N  G+  S+ A L V
Sbjct: 62  ELVIRDVTGE--DSASIMVKAINIAGET-SSHAFLLV 95

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 4e-14
 Identities = 27/107 (25%), Positives = 36/107 (33%), Gaps = 14/107 (13%)

Query: 10  PPEITLR-PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGT-----------QSR 57
            P +    P N +   GG   F C    D  P IQW K+ ++                  
Sbjct: 4   RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA 63

Query: 58  YMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
             V        +L I  V    D   Y C+A N +G +    A LTV
Sbjct: 64  AGVNTTDKEIEVLYIRNVTF-EDAGEYTCLAGNSIGIS-FHSAWLTV 108

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.9 bits (144), Expect = 7e-14
 Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 7/96 (7%)

Query: 10  PPEITLRPRNQAVKAGGIT---SFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPG 66
            P    +P +     G      +  C AR +P    +W+ NG  +               
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-- 61

Query: 67  GSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASL 102
             L+   PV  A+D   Y+CVA N  G  VS EASL
Sbjct: 62  -DLVISNPV-KAKDAGSYQCVATNARGTVVSREASL 95

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 59.4 bits (143), Expect = 9e-14
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 10/96 (10%)

Query: 10  PPEITLRPRNQ-AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
            P+   +P     VK G   +  C   G P P + W  N K +  +  R  V +      
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL--SGGRATVTDSG---- 55

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
            L I+ V+   D   Y C A N  GD    E  + V
Sbjct: 56  -LVIKGVK-NGDKGYYGCRATNEHGDK-YFETLVQV 88

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 2e-13
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 13  ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRI 72
           I  +PR+  V  G    F C   G+P+P + W + G+ +S +    +             
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST---FE 58

Query: 73  EPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                A D+  Y  V EN  G    AE +LT+ +
Sbjct: 59  ISSVQASDEGNYSVVVENSEGKQ-EAEFTLTIQK 91

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 6e-13
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 8/101 (7%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVI------QWRKNGKRVSGTQSRYMVQEF 63
           PP +     ++ +  G      C +   P             ++   ++G++SR+ V   
Sbjct: 2   PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
             G S L IE +    D   Y C   +  G    A  +L V
Sbjct: 62  -QGRSELHIENLNMEADPGQYRCNGTSSKGSD-QAIITLRV 100

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 57.2 bits (137), Expect = 1e-12
 Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P  T    +  V  G    F C   G P P + W K+   V      + +     G   
Sbjct: 8   KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVK-ESRHFQIDYDEEGNCS 66

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           L I  V    DDA Y C A N +G+A +  A L V
Sbjct: 67  LTISEVC-GDDDAKYTCKAVNSLGEA-TCTAELLV 99

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.8 bits (136), Expect = 1e-12
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 4/99 (4%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
           P   ++P    V  G   +FYC       PV+ W K+ + +   QS   ++ +      L
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDREL--KQSVKYMKRYNGNDYGL 59

Query: 71  RIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEE 109
            I  V+   D   Y   A+N  G        L V    E
Sbjct: 60  TINRVKG-DDKGEYTVRAKNSYGTK-EEIVFLNVTRHSE 96

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.8 bits (133), Expect = 4e-12
 Identities = 26/105 (24%), Positives = 35/105 (33%), Gaps = 9/105 (8%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQE------ 62
           PP         +V  G      C    G P     W K+G  +    ++           
Sbjct: 2   PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61

Query: 63  FPPGGSLLRIEPVRHARDDAVYECVAENGVGDAV-SAEASLTVYE 106
             P    L  +PV  A D   Y C A+NG G A+ S  A +   E
Sbjct: 62  IDPKSGDLIFDPV-TAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 105

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.2 bits (132), Expect = 5e-12
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 11/97 (11%)

Query: 10  PPEITLR-PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
            P I  + P +     G + +  C A G+P+P I+WRK               ++     
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKL--------DGSQTSKWLSSEP 55

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
           LL I+ V    D+  YEC AEN  G   + +  + ++
Sbjct: 56  LLHIQNV-DFEDEGTYECEAENIKGRD-TYQGRIIIH 90

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 6e-12
 Identities = 19/102 (18%), Positives = 27/102 (26%), Gaps = 5/102 (4%)

Query: 9   DPPEITLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           D      R    ++ AG      C  +     P + W K                     
Sbjct: 2   DVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 61

Query: 68  ---SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
               +L  EPV    D+  Y C A        S   +L V +
Sbjct: 62  ISFFILHFEPVL-PNDNGSYRCSANFQSNLIESHSTTLYVTD 102

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 54.7 bits (130), Expect = 9e-12
 Identities = 20/95 (21%), Positives = 29/95 (30%), Gaps = 3/95 (3%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P +  +P     +    T   CI  G+   V    K   +    Q          G   
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS-- 59

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           L     + + D+  Y+C AE   G A S   S   
Sbjct: 60  LVFLRPQAS-DEGHYQCFAETPAGVASSRVISFRK 93

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.7 bits (128), Expect = 2e-11
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
           P+      +     G    + C+A G P P ++W ++G+ ++      +          L
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE------L 55

Query: 71  RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           R   +    D  +Y+CVAEN  G    A A LTV
Sbjct: 56  RFSKLV-LEDSGMYQCVAENKHGTV-YASAELTV 87

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 2e-11
 Identities = 25/130 (19%), Positives = 40/130 (30%), Gaps = 34/130 (26%)

Query: 9   DPPEITL-----RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ-- 61
           +PP+I L      P    V AG          GDP P + W+K   + +   +R      
Sbjct: 3   EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAP 62

Query: 62  -------------------------EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAV 96
                                    E     S+  +E      D+ VY    +N VG+  
Sbjct: 63  EDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEK-EDEGVYTVTVKNPVGED- 120

Query: 97  SAEASLTVYE 106
               ++ V +
Sbjct: 121 QVNLTVKVID 130

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 3e-11
 Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 13/95 (13%)

Query: 11  PEITLRPRNQAVKAGGITSF-YCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
           P  T+ P++ AV                    I W +   ++ G      V         
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVT----- 56

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
                        ++ C A N  G A S  A++ +
Sbjct: 57  -------GVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 3e-11
 Identities = 21/107 (19%), Positives = 29/107 (27%), Gaps = 7/107 (6%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP---- 65
           PP I+   + Q    G      C  R  P P        + V  + +             
Sbjct: 7   PPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 65

Query: 66  -GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
              S L I  +  A    +Y C A N  G   +    L     E   
Sbjct: 66  GVISTLTISNIVRADFQTIYNCTAWNSFGSD-TEIIRLKEQGSEMSG 111

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 3e-11
 Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 12/107 (11%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPI---PVIQWRKNGKRVSGTQSRYMVQEFP-- 64
                +RP++  V  GG  +F     G  +   PV++W K       ++    +Q     
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 65  -----PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                     L I   + A     Y C           +  +LTV+E
Sbjct: 64  DRASKVYLFELHITDAQPA-FTGGYRCEVSTKDKFD-CSNFNLTVHE 108

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 4e-11
 Identities = 11/106 (10%), Positives = 24/106 (22%), Gaps = 11/106 (10%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARG---DPIPVIQWRKNGKRVSGTQSRYMVQEFPPG 66
           P ++ L  +   V  G   +  C            +   +  + +               
Sbjct: 2   PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEA 61

Query: 67  GSLLRIEPVRHARDDAVYECVAENGVGDA-------VSAEASLTVY 105
            +               + C+A   +           SA   L +Y
Sbjct: 62  TATFNSTAD-REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIY 106

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 5e-11
 Identities = 21/104 (20%), Positives = 28/104 (26%), Gaps = 8/104 (7%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQE-----F 63
           PP         +   G      C    G P     W K+G  +                 
Sbjct: 2   PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAV-SAEASLTVYE 106
            P    L  +P+    D   Y C A NG G  + S    +   E
Sbjct: 62  NPTTGELVFDPLSA-SDTGEYSCEARNGYGTPMTSNAVRMEAVE 104

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.3 bits (124), Expect = 6e-11
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 10  PPEITLR-PRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           P  +T+   R+Q+V+ G   +F C A+   P   + W +       +++           
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN------- 53

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
            +L I  V+ +     Y C   N         A+L V
Sbjct: 54  GILTIRNVQPSDAG-TYVCTGSNMFAMD-QGTATLHV 88

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.9 bits (123), Expect = 8e-11
 Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 4/95 (4%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P+I    R   +KAG   +      G P P   W       +      +  +       
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTS-- 59

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
           +     + A     Y+   +N +G+   A   + V
Sbjct: 60  IFFPSAKRADSG-NYKLKVKNELGED-EAIFEVIV 92

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 9e-11
 Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 5/95 (5%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
            P + ++  N +V  G      C   G  +    W       S T  +            
Sbjct: 2   VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGL--- 58

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
             +  V    +     C AEN VG A      + V
Sbjct: 59  -TLANVTSDLNRKNVTCWAENDVGRA-EVSVQVNV 91

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 1e-10
 Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 10/98 (10%)

Query: 13  ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRI 72
           +T +  +     G      C    +    ++W KNG+ +                 +L I
Sbjct: 3   VTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILII 61

Query: 73  EPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEK 110
           E      D A Y  +   G        A L+V   + K
Sbjct: 62  EGATK-ADAAEYSVMTTGGQS-----SAKLSV---DLK 90

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 19/99 (19%)

Query: 10  PPEITLR--PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
            P +  R  P N         +  C A G+P+P ++  K+G                   
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVT-------- 53

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
                        +  Y C A +  G  V+ E ++ V  
Sbjct: 54  --------VTRDLEGTYLCRARSTQG-EVTREVTVNVLS 83

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.5 bits (119), Expect = 4e-10
 Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 3/97 (3%)

Query: 12  EITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQ-SRYMVQEFPPGGSL 69
           ++ + P    +  G    F C          I W             R  V       S 
Sbjct: 2   QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 61

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L I          +Y+CV     G    A  ++ +++
Sbjct: 62  LTIYNANIDDAG-IYKCVVTAEDGTQSEATVNVKIFQ 97

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.5 bits (117), Expect = 7e-10
 Identities = 15/94 (15%), Positives = 23/94 (24%), Gaps = 5/94 (5%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
                 P  Q  K G      C       P I W+  G+ V   +    +        + 
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61

Query: 71  RIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
            I+      D+  Y C               + V
Sbjct: 62  GIKK----TDEGTYRCEGRILAR-GEINFKDIQV 90

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 2e-09
 Identities = 15/106 (14%), Positives = 25/106 (23%), Gaps = 16/106 (15%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARG---DPIPVIQWRKNGKRVSGTQSRYMVQEFPPG 66
           P  + L P       G   +  C   G        +   +  K +    +     E    
Sbjct: 4   PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAE---- 59

Query: 67  GSLLRIEPVRHARDDAVYECVAENGVGDA-------VSAEASLTVY 105
                +   R     A + C  E  +           SA   L  +
Sbjct: 60  -VTTTVLVRRD-HHGAQFSCRTELDLRPQGLELFENTSAPYQLQTF 103

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 2e-08
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 10/98 (10%)

Query: 17  PRNQAVKAGGITSFYCI---ARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP-----GGS 68
           P +  +        +CI     G P P ++W  NG  ++ T   +     P         
Sbjct: 4   PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
            LR+    H  ++  Y  +A N  G A SA       +
Sbjct: 64  CLRLNQPTH-VNNGNYTLLAANPFGQA-SASIMAAFMD 99

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 3e-08
 Identities = 16/105 (15%), Positives = 27/105 (25%), Gaps = 11/105 (10%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ-------- 61
           P  ++       V  G      C   G    +  W+ NG  +                  
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 62  --EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
                   ++L I  +        + C A+N  G   +A   L  
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGID-AAYIQLIY 105

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 8e-08
 Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 12/108 (11%)

Query: 14  TLRPRNQAVKAGGITSFYCIARGDPI---PVIQWRKNGKRVSGTQSRYMVQ-------EF 63
             +P+   VK G   +F    + + +   P I+W K       +++   +Q         
Sbjct: 4   IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 63

Query: 64  PPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEGEEKP 111
                 ++I   +       Y C          S    L V+E     
Sbjct: 64  RVYTFEMQIIKAKDN-FAGNYRCEVTYKDKFD-SCSFDLEVHESTGTT 109

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-07
 Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 12/96 (12%)

Query: 13  ITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
           + L+   + V  G      C    +  +  + + K+G+ +      +           + 
Sbjct: 3   LLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHN----------IS 52

Query: 72  IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYEG 107
           I       D   Y C  +    D  S   ++TV + 
Sbjct: 53  ITNATV-EDSGTYYCTGKVWQLDYESEPLNITVIKA 87

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-07
 Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 8/96 (8%)

Query: 17  PRNQAVKAGGITSFYCI---ARGDPIPVIQWRKNGKRVSGT---QSRYMVQEFPPGGSLL 70
           P    +++      +CI    +G+P P +QW  NG  ++ +    ++  V         L
Sbjct: 5   PTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCL 64

Query: 71  RIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           +++   H  ++  Y  +A+N  G     + S     
Sbjct: 65  QLDNPTHM-NNGDYTLIAKNEYGKD-EKQISAHFMG 98

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.1 bits (100), Expect = 2e-07
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 6/94 (6%)

Query: 14  TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIE 73
            L+  N  VK     +  C++      +     +       +            S+LRI+
Sbjct: 7   FLQVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLS-----QNNSILRID 61

Query: 74  PVRHARDDAVYECVAENGVGDAVSAEASLTVYEG 107
           P++       Y+C   N V    S    L +   
Sbjct: 62  PIKREDAG-EYQCEISNPVSVRRSNSIKLDIIFD 94

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 5e-07
 Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 16/101 (15%)

Query: 20  QAVKAGGITSFYC------IARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIE 73
           Q +   G     C          + +P +QW K+ K +      +           L + 
Sbjct: 9   QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV-----KDRLIVM 63

Query: 74  PVRHARDDAVYECVAENGVGDA---VSAEASLTVYEGEEKP 111
            V   +    Y C A          ++        E E KP
Sbjct: 64  NVAE-KHRGNYTCHASYTYLGKQYPITRVIEFITLE-ENKP 102

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-06
 Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 12/95 (12%)

Query: 13  ITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
           + L+      K        C +  +  +  + + +NGK                      
Sbjct: 5   LLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDF----------H 54

Query: 72  IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           I      +D   Y C    G  +  S   ++T+ +
Sbjct: 55  IPKATL-KDSGSYFCRGLVGSKNVSSETVNITITQ 88

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 3e-06
 Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 9/98 (9%)

Query: 10  PPEITLRPR-NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGS 68
                 +      V  G           D    ++W KNG+ +  + S+Y+ +      +
Sbjct: 5   STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 63

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           L   +      DDA Y+CV              L V E
Sbjct: 64  LTISQC--SLADDAAYQCVVGG-----EKCSTELFVKE 94

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 3e-06
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 12/95 (12%)

Query: 13  ITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
           + L+  +   + G      C +  D P+  + + +N             ++F        
Sbjct: 3   LVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQN----------GKSKKFSRSDPNFS 52

Query: 72  IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           I    H+     Y C    G     S   ++TV  
Sbjct: 53  IPQANHS-HSGDYHCTGNIGYTLYSSKPVTITVQA 86

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 4e-06
 Identities = 12/100 (12%), Positives = 24/100 (24%), Gaps = 8/100 (8%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRV------SGTQSRYMVQEFP 64
             +     +  V         C   G   P ++W+            +   +        
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 65  PGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
              S +    V    +   Y C+     G     E S+ +
Sbjct: 62  FSSSGITFSSVTRKDNG-EYTCMVSEEGGQN-YGEVSIHL 99

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 5e-06
 Identities = 12/96 (12%), Positives = 19/96 (19%), Gaps = 11/96 (11%)

Query: 10  PPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGS 68
            P   +         G   +  C          + W           +      +   G 
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKP-----AAGSHPSRWAGMGR 60

Query: 69  LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
            L +  V+   D   Y C               L V
Sbjct: 61  RLLLRSVQ-LHDSGNYSCYRAGRPA----GTVHLLV 91

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 3e-05
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 9/95 (9%)

Query: 12  EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLR 71
           E+        V  G    F      +P    QW+  G+ ++ +    ++++      +L 
Sbjct: 3   EVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKK--HILI 59

Query: 72  IEPVRHARDDAVYECVAENGVGDAVSAEASLTVYE 106
           +   +           A N       + A+L V E
Sbjct: 60  LHNCQLGMTG-EVSFQAAN-----AKSAANLKVKE 88

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 4e-05
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 17  PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVR 76
            R    K GG     C  + +   V    +NG   + +    ++         L I  + 
Sbjct: 4   YRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKN-----LLIFNLS 58

Query: 77  HARDDAVYECVAENGVGDAVSAEASLTVY 105
              D  VY+C++E  V +  +    +  +
Sbjct: 59  EG-DSGVYQCLSEERVKNK-TVFQVVAKH 85

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.3 bits (85), Expect = 5e-05
 Identities = 17/103 (16%), Positives = 26/103 (25%), Gaps = 9/103 (8%)

Query: 7   FLDPPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP 65
           FL       R     +  G    F C      P    +W  N                  
Sbjct: 2   FLQEFSAEERD-PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS-QT 59

Query: 66  GGSLLRIEPVRHARDDAVYECVAENGVGDA----VSAEASLTV 104
            G+L   +      D   Y C A + +        S  + L++
Sbjct: 60  TGNLYIAKTEAS--DLGNYSCFATSHIDFITKSVFSKFSQLSL 100

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 7e-05
 Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 7/86 (8%)

Query: 10 PPEITLRPRNQAVKAGGITSFYCIARG--DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           P +TL P +    +    +  C        +  + W+ +G  V+         +     
Sbjct: 5  SPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNK 64

Query: 68 ----SLLRIEPVRHARDDAVYECVAE 89
              S L +      R    Y C   
Sbjct: 65 YMASSYLTLTARAWERHS-SYSCQVT 89

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 9e-05
 Identities = 9/103 (8%), Positives = 26/103 (25%), Gaps = 8/103 (7%)

Query: 8   LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK------RVSGTQSRYMVQ 61
           +    +        +         C   G   P ++W+ +          +   +     
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 62  EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
                 + +  + V        Y C+     G++   E  + +
Sbjct: 62  RVTFLPTGITFKSVTREDTG-TYTCMVSEEGGNS-YGEVKVKL 102

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 1e-04
 Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 15/95 (15%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLL 70
           P+++L P    +  G   +  C                         +         S L
Sbjct: 2   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKW-----------FHNGSLSEETNSSL 50

Query: 71  RIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
            I   +   D   Y+C  +       S    L V+
Sbjct: 51  NIVNAKFE-DSGEYKCQHQQVNE---SEPVYLEVF 81

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 3e-04
 Identities = 16/96 (16%), Positives = 21/96 (21%), Gaps = 17/96 (17%)

Query: 11  PEITLRPRNQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSL 69
             + L P+   V      +  C          IQW  NG  +                  
Sbjct: 5   AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYR--------- 55

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
                  +  D   Y C          S    LTV 
Sbjct: 56  ----FKANNNDSGEYTCQTGQTSL---SDPVHLTVL 84

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 5e-04
 Identities = 13/97 (13%), Positives = 22/97 (22%), Gaps = 15/97 (15%)

Query: 8   LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           L    + L P+  +V      +  C     P        + + +  +Q+           
Sbjct: 3   LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFI------ 56

Query: 68  SLLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTV 104
                       D   Y C          S    L V
Sbjct: 57  ------DAATVNDSGEYRCQTNLSTL---SDPVQLEV 84

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 6e-04
 Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 13/91 (14%)

Query: 22  VKAGGITSFYCIARGDPIPVIQWRKNGK--------RVSGTQSRYMVQEFPPGGSLLRIE 73
               G  +F+  +   P+  + W+K                 S             L I 
Sbjct: 7   GVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIY 65

Query: 74  PVRHARDDAVYECVAENGVGDAVSAEASLTV 104
            +  + D+  YE  + N      + +  L V
Sbjct: 66  NLT-SSDEDEYEMESPNITD---TMKFFLYV 92

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 34.3 bits (77), Expect = 7e-04
 Identities = 18/96 (18%), Positives = 25/96 (26%), Gaps = 8/96 (8%)

Query: 15  LRPRNQAVKAGGITSFYC-IARGDPIPVIQWRKNGKRVSGTQSRYM----VQEFPPGGSL 69
            +   +    G      C +    P P+I W+K                 +   P G   
Sbjct: 7   AKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLY 66

Query: 70  LRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY 105
             I       D   Y C A+N        E  L  Y
Sbjct: 67  FTIVTKEDVSDIYKYVCTAKNAAV---DEEVVLVEY 99

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (75), Expect = 0.001
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 10 PPEITLRPRNQAVKAGGITSFYCIARGD--PIPVIQWRKNGKRV-SGTQSRYMVQEFPPG 66
           PE+      +   +    +  C+ +        +QW  N  ++     S    ++    
Sbjct: 4  APEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGS 63

Query: 67 G----SLLRIEPVRHARDDAVYECVAE 89
          G    S L +      + D  + C A 
Sbjct: 64 GFFVFSRLEVTRAEWEQKD-EFICRAV 89

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.1 bits (75), Expect = 0.002
 Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 10 PPEITLRPRNQAVKAGGITSFYCIARG--DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           P++   P      A  + S  C+          ++W+ NG+     ++   + +     
Sbjct: 3  APQVYTIPPPLEQMAKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSY 62

Query: 68 ---SLLRIEPVRHARDDAVYECVAE 89
             S L ++       +  + C   
Sbjct: 63 FVYSKLNVQKSNWEAGN-TFTCSVL 86

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (73), Expect = 0.003
 Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 10 PPEITLRPRNQAVKAGGITSFYCIARG--DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           P++   P ++        S  C+ +G       ++W  NG+  +  ++   V +    G
Sbjct: 4  EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLD--SDG 61

Query: 68 -----SLLRIEPVRHARDDAVYECVAE 89
               S L ++  R  + + V+ C   
Sbjct: 62 SFFLYSKLTVDKSRWQQGN-VFSCSVM 87

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 32.3 bits (73), Expect = 0.004
 Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 10 PPEITLRPRNQAVKAGGITSFYCIARG--DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           P++      +        S  C+ +G   P    +W+ NG+     ++     +    G
Sbjct: 4  GPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMD--TDG 61

Query: 68 -----SLLRIEPVRHARDDAVYECVAE 89
               S L ++     + +  + C   
Sbjct: 62 SYFLYSKLNVKKETWQQGN-TFTCSVL 87

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.9 bits (72), Expect = 0.004
 Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 4/82 (4%)

Query: 10 PPEITLRPRNQAVKAGGITSFYCIARG--DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG 67
           P+I +  R+   + G      C   G       +   KNG+R+   +   +        
Sbjct: 5  TPKIQVYSRHP-AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFS-KDWS 62

Query: 68 SLLRIEPVRHARDDAVYECVAE 89
            L         +   Y C   
Sbjct: 63 FYLLYYTEFTPTEKDEYACRVN 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	111
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.79
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.79
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.79
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.78
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.76
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.74
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.74
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.73
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.73
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.72
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.72
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.72
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.71
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.7
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.69
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.69
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.69
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.69
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.67
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.66
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.66
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.66
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.65
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.65
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.64
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.62
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.62
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.61
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.61
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.61
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.61
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.6
d2avga1	110	Cardiac myosin binding protein C, different domain	99.6
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.58
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.58
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.57
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.56
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.54
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.52
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.51
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.51
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.5
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.49
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.48
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.48
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.45
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.45
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.44
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.41
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.41
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.39
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.38
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.37
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.3
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.21
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.13
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.12
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	99.01
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.95
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.94
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.93
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.93
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.92
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.88
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.88
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.87
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.87
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.86
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.86
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.83
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.83
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.83
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.83
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.82
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.8
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.79
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.79
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.79
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.79
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.79
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.76
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.75
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.75
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.74
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.74
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.73
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.72
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.71
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.71
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.7
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.7
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.7
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.69
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.69
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.68
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.67
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.64
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.63
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.62
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.62
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.62
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.61
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.61
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.6
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.6
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.59
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.59
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.58
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.57
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.56
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.56
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.54
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.53
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.52
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.52
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.52
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.52
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.5
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.49
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.49
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.48
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.48
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.48
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.47
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.47
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.46
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.45
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.45
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.45
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.43
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.43
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.43
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.43
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.42
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.41
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.4
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.33
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.32
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.32
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.32
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.32
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.31
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.31
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.3
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.29
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.28
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.26
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	98.24
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.21
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.18
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.18
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.17
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.13
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.1
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.1
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.06
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.06
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	98.05
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.04
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.04
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	98.04
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.03
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	98.01
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	98.0
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.0
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	98.0
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.0
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.97
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.96
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.96
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.96
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.94
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.93
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.93
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.93
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.93
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.92
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.9
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.89
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.89
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.89
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.89
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.89
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.89
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.88
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.87
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.86
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.85
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.84
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.84
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.83
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.83
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.83
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.83
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.8
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.8
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.79
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.79
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.79
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.79
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.79
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.78
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.78
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.78
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.76
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.76
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.76
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.76
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.75
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.75
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.75
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.74
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.72
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.72
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.72
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.7
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.69
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.69
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.67
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.67
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.61
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.57
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.56
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.56
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.53
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.52
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.51
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.51
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.5
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.45
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.39
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.33
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.33
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.33
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.31
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.26
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.25
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.23
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.13
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.11
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.04
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.02
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.0
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	96.97
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	96.97
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.69
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	96.64
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.49
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	96.46
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.35
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	96.31
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	96.15
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	96.12
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	95.15
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	95.15
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	94.97
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	94.51
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	94.48
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	92.34
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	90.62
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	89.49
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	84.06
d1xmwa2	66	CD3 epsilon chain ectodomain fragment {Sheep (Ovis	82.56

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9.6e-20  Score=89.39  Aligned_cols=97  Identities=27%  Similarity=0.422  Sum_probs=80.0

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      |.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++.+.... ....|.|..+.. .|+|.|.|.+.|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~-~~~~~~~~~-~~~~L~I~~~~~-~D~G~Y~C~a~N   77 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES-EHMKVENSE-NGSKLTILAARQ-EHCGCYTLLVEN   77 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCS-SSEEEEECS-SEEEEEETTCCT-TTCEEEEEEEEC
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccC-CcEEEEEec-ceeEEEEeeCCc-ccCEEEEEEEEE
Confidence            34555667778999999999999999999999999999988654 556555433 445699999998 999999999999


Q ss_pred             CCCceEeeEEEEEEecCCCCC
Q psy2442          91 GVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        91 ~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      ..|.. +..+.|.|.+.|.+|
T Consensus        78 ~~G~~-~~~~~l~V~~~P~pP   97 (101)
T d2cqva1          78 KLGSR-QAQVNLTVVDKPDPP   97 (101)
T ss_dssp             SSCEE-ECCEEEEEECSCSCC
T ss_pred             CCCEE-EEEEEEEEEecCCCc
Confidence            99985 888899999888776

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.79  E-value=4.3e-18  Score=83.55  Aligned_cols=94  Identities=30%  Similarity=0.439  Sum_probs=76.8

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .+|.+...+..+.+..|+.+.|.|.+.+.|.|.+.|++++..+... .++...........|.|.++.. .|.|.|.|.+
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~-~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a   84 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES-RHFQIDYDEEGNCSLTISEVCG-DDDAKYTCKA   84 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCS-SSEEEEECTTCEEEEEESSCCG-GGCEEEEEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccce-eeEeEEEecCceeeeEecCCCH-HhCEEEEEEE
Confidence            4677777888888999999999999999999999999999998754 5555543332345699999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEe
Q psy2442          89 ENGVGDAVSAEASLTVY  105 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~  105 (111)
                      .|..|.. ...+.|.|.
T Consensus        85 ~N~~G~~-~~~~~L~V~  100 (102)
T d1fhga_          85 VNSLGEA-TCTAELLVE  100 (102)
T ss_dssp             EETTEEE-EEEEEEEEE
T ss_pred             EECCcEE-EEEEEEEEE
Confidence            9999875 777777664

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.79  E-value=1.7e-18  Score=84.31  Aligned_cols=96  Identities=25%  Similarity=0.444  Sum_probs=76.3

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      .|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... .++.... +.....|.|.++.. .|.|.|.|.+.
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~-~~~~~~~-~~~~~~L~I~~~~~-~D~G~Y~C~a~   77 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS-VKYMKRY-NGNDYGLTINRVKG-DDKGEYTVRAK   77 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSB-TTBBCCC-STTEEEEEESCCCS-GGGSCEEEEEE
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeecccee-eEEEEEe-cCCeeEEEeCCCce-ecCEEEEEEEE
Confidence            367777888888999999999999999999999999999988643 3443322 11344599999998 99999999999


Q ss_pred             eCCCceEeeEEEEEEecCCC
Q psy2442          90 NGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~~~~~~  109 (111)
                      |..|.. ...+.|.|...+.
T Consensus        78 N~~G~~-~~~~~l~V~~~~~   96 (97)
T d1koaa1          78 NSYGTK-EEIVFLNVTRHSE   96 (97)
T ss_dssp             ETTEEE-EEEECCEEECSCC
T ss_pred             ECCCEE-EEEEEEEEeecCC
Confidence            999874 7777777765443

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.79  E-value=1.1e-17  Score=81.55  Aligned_cols=94  Identities=29%  Similarity=0.294  Sum_probs=75.5

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      +|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+... .+............|.|.++.. .|.|.|.|.+.
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~-~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~a~   81 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERS-DRIYWYWPEDNVCELVIRDVTG-EDSASIMVKAI   81 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC-SSEEEEEEETTEEEEEECSCCG-GGCEEEEEEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeee-eeeEEEeccceEEEEEeccCcc-ccCEEEEEEEE
Confidence            677887888889999999999999999999999999999998754 3433322221344699999998 99999999999


Q ss_pred             eCCCceEeeEEEEEEec
Q psy2442          90 NGVGDAVSAEASLTVYE  106 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~~~  106 (111)
                      |..|.. .....|.|..
T Consensus        82 N~~G~~-~~~~~L~V~~   97 (98)
T d1g1ca_          82 NIAGET-SSHAFLLVQA   97 (98)
T ss_dssp             ETTEEE-EEEEEEEEEC
T ss_pred             ECCcEE-EEEEEEEEEE
Confidence            999875 7777777653

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.78  E-value=8.3e-18  Score=80.59  Aligned_cols=87  Identities=31%  Similarity=0.566  Sum_probs=72.2

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      |.+...+.+..+..|+.+.|.|.+.|.|.|.+.|+++|..+... .++...     ...|.|..+.. .|.|.|.|.+.|
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~-~~~~~~-----~~~L~i~~v~~-~D~G~Y~C~a~N   74 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ-NRIEVS-----GGELRFSKLVL-EDSGMYQCVAEN   74 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCC-SSEEEE-----TTEEEESSCCG-GGCEEEEEEEEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeecccccc-ceeeee-----eeeEEEEeecc-cCCEEEEEEEEe
Confidence            66777888889999999999999999999999999999988654 455543     23489999998 999999999999


Q ss_pred             CCCceEeeEEEEEEe
Q psy2442          91 GVGDAVSAEASLTVY  105 (111)
Q Consensus        91 ~~~~~~~~~~~l~~~  105 (111)
                      ..|.. .....|.|.
T Consensus        75 ~~G~~-~~~~~l~V~   88 (89)
T d1cs6a4          75 KHGTV-YASAELTVQ   88 (89)
T ss_dssp             TTEEE-EEEEEEEEE
T ss_pred             CCCEE-EEEEEEEEE
Confidence            99874 666666653

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.76  E-value=7e-18  Score=81.48  Aligned_cols=91  Identities=19%  Similarity=0.271  Sum_probs=73.5

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      +|.+...+..+.+..|+.+.|.|...|.|.|.+.|++++..+... .++...... ....|.+.++.. .|+|.|.|.+.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~-~~~~~~~~~-~~~~L~I~~~~~-~D~G~Y~c~a~   78 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALA-PELLVDAKS-STTSIFFPSAKR-ADSGNYKLKVK   78 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCS-TTSEEEEET-TEEEEECTTBCG-GGCEEEEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceee-eeeeecccc-cceeeccccccc-cccEEEEEEEE
Confidence            577776777889999999999999999999999999999887644 444443322 445689999998 99999999999


Q ss_pred             eCCCceEeeEEEEEE
Q psy2442          90 NGVGDAVSAEASLTV  104 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~  104 (111)
                      |..|.. +..+.|.|
T Consensus        79 N~~G~~-~~~~~l~V   92 (93)
T d1wiua_          79 NELGED-EAIFEVIV   92 (93)
T ss_dssp             ETTEEE-EEEEEEEE
T ss_pred             ECCCEE-EEEEEEEE
Confidence            999874 77777665

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.74  E-value=1.5e-16  Score=77.23  Aligned_cols=88  Identities=30%  Similarity=0.526  Sum_probs=67.0

Q ss_pred             cCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      .++.+.+..|+++.|.|.+.+.|.+.+.|++++..+..................|.|.++.. .|+|.|.|.+.|..|..
T Consensus         9 ~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~   87 (97)
T d1biha3           9 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLP-EDEGVYTCEVDNGVGKP   87 (97)
T ss_dssp             ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCG-GGCEEEEEEECCSSSSC
T ss_pred             CCCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccc-cccEEEEEEEEECCCcE
Confidence            34667889999999999999999999999999998864322211111222345699999998 99999999999999875


Q ss_pred             EeeEEEEEE
Q psy2442          96 VSAEASLTV  104 (111)
Q Consensus        96 ~~~~~~l~~  104 (111)
                      ....+.|.|
T Consensus        88 ~s~s~~L~V   96 (97)
T d1biha3          88 QKHSLKLTV   96 (97)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            455666665

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.74  E-value=5.2e-17  Score=77.76  Aligned_cols=86  Identities=34%  Similarity=0.514  Sum_probs=68.4

Q ss_pred             CCeeEEcCc-ceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          10 PPEITLRPR-NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        10 ~p~~~~~~~-~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      +|.+...+. .+.+..|+.+.|.|.+.|.|.|.+.|++++..+..  .++...    . ..|.|.++.. .|.|.|.|.+
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~--~~~~~~----~-~~L~i~~v~~-~d~G~Y~C~a   73 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG--GRATVT----D-SGLVIKGVKN-GDKGYYGCRA   73 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCS--SSEEEE----T-TEEEESSCCS-TTCEEEEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCcc--ccEEEe----e-eeEEECCCCh-hhCEEEEEEE
Confidence            466665554 35678899999999999999999999999998854  444443    2 2389999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEE
Q psy2442          89 ENGVGDAVSAEASLTV  104 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~  104 (111)
                      .|..|.. ...+.|.|
T Consensus        74 ~N~~G~~-~~~~~l~V   88 (89)
T d1biha4          74 TNEHGDK-YFETLVQV   88 (89)
T ss_dssp             EETTEEE-EEEEEEEE
T ss_pred             EECCCEE-EEEEEEEE
Confidence            9999874 66666655

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.6e-17  Score=78.25  Aligned_cols=87  Identities=26%  Similarity=0.378  Sum_probs=66.6

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEE-eCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCce
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ-EFPPGGSLLRIEPVRHARDDAVYECVAENGVGDA   95 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~   95 (111)
                      |..+.+..|+.+.|.|.+.+.|.+.+.|++++..+... .+.... ........|.|.++.. .|.|.|.|.+.|..|..
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~-~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~   80 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL-DQLYIPVSEQHWIGFLSLKSVER-SDAGRYWCQVEDGGETE   80 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSS-EEEEEEEETTEEEEEEEESSCCG-GGCEEEEEEESSCTTCE
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccc-eeeeeeecccCceeeEEECCCCc-ccCEEEEEEEEECCCCE
Confidence            45578889999999999999999999999999988654 332222 2121224588999998 99999999999998865


Q ss_pred             EeeEEEEEEe
Q psy2442          96 VSAEASLTVY  105 (111)
Q Consensus        96 ~~~~~~l~~~  105 (111)
                      .+..+.|.|.
T Consensus        81 ~S~~~~l~V~   90 (91)
T d1rhfa1          81 ISQPVWLTVE   90 (91)
T ss_dssp             ECCCEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            4556777664

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=9.8e-17  Score=76.11  Aligned_cols=82  Identities=24%  Similarity=0.429  Sum_probs=63.0

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      |.+...+....+..|+.+.|.|.+.|.|.| .+.|+++|..+.....         ..  +.+..... .|+|.|.|.+.
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~---------~~--~~l~~~~~-~d~G~Y~C~A~   69 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---------SP--SVLNVTGV-TQSTMFSCEAH   69 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---------SS--EEEEECCC-SSCEEEEEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC---------cc--eEEecCCc-cccEEEEEEEE
Confidence            667778888889999999999999999987 8999999998764311         12  34455555 89999999999


Q ss_pred             eCCCceEeeEEEEEE
Q psy2442          90 NGVGDAVSAEASLTV  104 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~  104 (111)
                      |..|...+....|.+
T Consensus        70 N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          70 NLKGLASSRTATVHL   84 (85)
T ss_dssp             ETTEEEECCCEEEEE
T ss_pred             cCCCcEEEEEEEEEE
Confidence            999854344555544

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.72  E-value=1e-16  Score=76.99  Aligned_cols=86  Identities=29%  Similarity=0.561  Sum_probs=66.3

Q ss_pred             CCeeEEc-CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          10 PPEITLR-PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        10 ~p~~~~~-~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      +|.+... +..+.+..|+.+.|.|.+.|.|.|.+.|++.+........     .   ....|.|.++.. .|+|.|.|.+
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~-----~---~~~~L~I~~v~~-~D~G~Y~C~a   74 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWL-----S---SEPLLHIQNVDF-EDEGTYECEA   74 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCS-----B---SSSEEEECSCCG-GGCEEEEEEE
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEee-----e---eeeEEEeCCCCc-cCCEEEEEEE
Confidence            4565543 5677889999999999999999999999997654432110     1   344599999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEEe
Q psy2442          89 ENGVGDAVSAEASLTVY  105 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~~  105 (111)
                      .|..|.. ...+.|.|.
T Consensus        75 ~N~~G~~-~~~~~l~V~   90 (91)
T d1cs6a3          75 ENIKGRD-TYQGRIIIH   90 (91)
T ss_dssp             EETTEEE-EEEEEEEEE
T ss_pred             EECCCEE-EEEEEEEEE
Confidence            9999874 667776653

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.72  E-value=1.5e-17  Score=79.96  Aligned_cols=88  Identities=31%  Similarity=0.537  Sum_probs=69.5

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      ...|..+.+..|+.+.|.|.+.|.|.|.+.|++++..+... .++...... ....|.+.++.. .|+|.|.|.+.|..|
T Consensus         3 i~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~-~~~~~~~~~-~~~~L~i~~v~~-~D~G~Y~C~a~N~~G   79 (91)
T d1tnna_           3 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTS-ARHQVTTTK-YKSTFEISSVQA-SDEGNYSVVVENSEG   79 (91)
T ss_dssp             SBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSS-SSCEEEECS-SEEEEECSSCCS-CCCEEEEEECBCSSC
T ss_pred             EeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccc-cceeeeeec-ceeEEeecCCCH-HHCEEEEEEEEECCC
Confidence            34566788999999999999999999999999999887643 444443322 445699999998 999999999999998


Q ss_pred             ceEeeEEEEEEe
Q psy2442          94 DAVSAEASLTVY  105 (111)
Q Consensus        94 ~~~~~~~~l~~~  105 (111)
                      .. ...+.|.|.
T Consensus        80 ~~-~~~~~l~V~   90 (91)
T d1tnna_          80 KQ-EAEFTLTIQ   90 (91)
T ss_dssp             BC-CEEEEEECC
T ss_pred             EE-EEEEEEEEE
Confidence            75 667766653

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=9.7e-17  Score=78.36  Aligned_cols=94  Identities=29%  Similarity=0.498  Sum_probs=68.8

Q ss_pred             CCeeEEcCcc--eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCC-ceEEEeCCCCCeEEEEccCCCCCCCeEEEE
Q psy2442          10 PPEITLRPRN--QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS-RYMVQEFPPGGSLLRIEPVRHARDDAVYEC   86 (111)
Q Consensus        10 ~p~~~~~~~~--~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c   86 (111)
                      ||.+...+..  ..+..|+.+.|.|.+.|.|.|.+.|++++..+..... ........ ....|.|.++.. .|.|.|.|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~-~~~~L~I~~v~~-~D~G~Y~C   80 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD-DSSELTIRNVDK-NDEAEYVC   80 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECT-TSCEEEECSCCG-GGCEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeec-CceEEEeCCCCc-ccCEEEEE
Confidence            5666544433  3456799999999999999999999999998854311 11111111 345699999998 99999999


Q ss_pred             EeeeCCCceEeeEEEEEEec
Q psy2442          87 VAENGVGDAVSAEASLTVYE  106 (111)
Q Consensus        87 ~~~~~~~~~~~~~~~l~~~~  106 (111)
                      .+.|..|.. ...+.|.|..
T Consensus        81 ~a~N~~G~~-~~~~~l~V~~   99 (100)
T d1qz1a3          81 IAENKAGEQ-DASIHLKVFA   99 (100)
T ss_dssp             EEEETTEEE-EEEEEEEEEC
T ss_pred             EEEECCCEE-EEEEEEEEEE
Confidence            999999874 7777777754

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=4.9e-16  Score=75.40  Aligned_cols=90  Identities=24%  Similarity=0.414  Sum_probs=66.8

Q ss_pred             EcCcceeeecCCcEEEEEEEeccCC-CeEEEEEC-CeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDPI-PVIQWRKN-GKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ..|....+..|+++.|.|.+.+.|. +.+.|++. +..+.....++...........|.|.++.. .|.|.|.|.+.|..
T Consensus         5 i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~   83 (97)
T d1epfa1           5 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANI-DDAGIYKCVVTAED   83 (97)
T ss_dssp             EESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETT
T ss_pred             EECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCch-hhceEEEEEEEeCC
Confidence            3455678889999999999998875 68999984 444443335555443332456699999998 99999999999998


Q ss_pred             CceEeeEEEEEEe
Q psy2442          93 GDAVSAEASLTVY  105 (111)
Q Consensus        93 ~~~~~~~~~l~~~  105 (111)
                      |...+..+.|.+.
T Consensus        84 G~~~~~tv~l~V~   96 (97)
T d1epfa1          84 GTQSEATVNVKIF   96 (97)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CcEEEEEEEEEEE
Confidence            8643556676664

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=4.2e-16  Score=74.99  Aligned_cols=88  Identities=20%  Similarity=0.359  Sum_probs=67.2

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCC-ceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS-RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      +.+...|....+..|+.+.|.|.+.|.|.|.+.|++++..+..... ++...    ....|.|.++.. .|+|.|.|.+.
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~----~~~~L~I~~~~~-~D~G~Y~C~a~   76 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL----SNNYLQIRGIKK-TDEGTYRCEGR   76 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC----TTSCEEETTCCG-GGCEEEEEEEE
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeee----eeeeEEECCCCH-HhCEEEEEEEE
Confidence            3455667778899999999999999999999999999998864422 23222    233499999998 99999999999


Q ss_pred             eCCCceEeeEEEEEE
Q psy2442          90 NGVGDAVSAEASLTV  104 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~  104 (111)
                      |..+.. .....+.|
T Consensus        77 n~~~~~-~~~~~i~V   90 (92)
T d1epfa2          77 ILARGE-INFKDIQV   90 (92)
T ss_dssp             EGGGTE-EEEEEEEE
T ss_pred             ECcCCE-EEEEEEEE
Confidence            976553 44445544

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.69  E-value=1.4e-16  Score=77.43  Aligned_cols=89  Identities=30%  Similarity=0.522  Sum_probs=66.2

Q ss_pred             CCeeEEcCcceeeecC---CcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEE
Q psy2442          10 PPEITLRPRNQAVKAG---GITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYEC   86 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g---~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c   86 (111)
                      +|.+...+....+..|   +.+.|.|.+.+.|.|.+.|++++..+...........   ....+.+..+.. .|.|.|.|
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~---~~~~l~i~~~~~-~d~G~Y~C   79 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV---AGDLVISNPVKA-KDAGSYQC   79 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE---TTEEEEESCCHH-HHCEEEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEee---eeeEEEEecccc-cCCEEEEE
Confidence            5677777777666554   7899999999999999999999999865433333322   445577777877 89999999


Q ss_pred             EeeeCCCceEeeEEEE
Q psy2442          87 VAENGVGDAVSAEASL  102 (111)
Q Consensus        87 ~~~~~~~~~~~~~~~l  102 (111)
                      .+.|..|...+....|
T Consensus        80 ~a~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          80 VATNARGTVVSREASL   95 (97)
T ss_dssp             EEEETTEEEECCCEEE
T ss_pred             EEEECCCEEEEEEEEE
Confidence            9999998643444444

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.69  E-value=1.5e-16  Score=76.81  Aligned_cols=89  Identities=22%  Similarity=0.355  Sum_probs=68.3

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      .|.+...+..+.+..|+.+.|.|.+.+.|.+ .+.|+++|..+...........   ....|.|.++.. .|.|.|.|.+
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~---~~~~L~i~~v~~-~D~G~Y~C~a   77 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRK---DEGSLVFLRPQA-SDEGHYQCFA   77 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECT---TSCCEEESSCCG-GGCEEEEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecc---cceEEEEeccCh-hcCeEEEEEE
Confidence            4667677777889999999999999998866 7999999998865433433322   334599999998 9999999999


Q ss_pred             eeCCCceEeeEEEE
Q psy2442          89 ENGVGDAVSAEASL  102 (111)
Q Consensus        89 ~~~~~~~~~~~~~l  102 (111)
                      .|..|...+..+.|
T Consensus        78 ~N~~G~~~s~~v~l   91 (94)
T d1biha1          78 ETPAGVASSRVISF   91 (94)
T ss_dssp             EETTEEEECCCEEE
T ss_pred             EeCCCEEEEEEEEE
Confidence            99988643334443

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=4e-16  Score=75.59  Aligned_cols=86  Identities=26%  Similarity=0.401  Sum_probs=68.4

Q ss_pred             cceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442          18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS   97 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~   97 (111)
                      .+..+.+|+.++|.|.+.+ +.+.+.|++++..+... .+.....   ....|.|.++.. .|.|.|.|.+.|..|...+
T Consensus        11 ~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~-~~~~~~~---~~~~L~I~~v~~-~d~G~Y~C~a~N~~g~~~S   84 (96)
T d1l6za2          11 TNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLT-ERMTLSQ---NNSILRIDPIKR-EDAGEYQCEISNPVSVRRS   84 (96)
T ss_dssp             SCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCC-TTEEEET---TTTEEEECSCCG-GGCEEEEEEEESSSCCEEC
T ss_pred             CceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccc-cceeccC---CceEEEEeccch-hhceEEEEEEEeCCCCeEE
Confidence            4457889999999998866 45789999999988654 4444443   445699999998 9999999999999887555


Q ss_pred             eEEEEEEecCCC
Q psy2442          98 AEASLTVYEGEE  109 (111)
Q Consensus        98 ~~~~l~~~~~~~  109 (111)
                      ..+.|.|.++|.
T Consensus        85 ~~~~L~V~~~Ps   96 (96)
T d1l6za2          85 NSIKLDIIFDPS   96 (96)
T ss_dssp             CCCEEEECCSCC
T ss_pred             EeEEEEEEcCCC
Confidence            678888888774

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.69  E-value=7e-17  Score=78.47  Aligned_cols=80  Identities=35%  Similarity=0.580  Sum_probs=63.0

Q ss_pred             eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCC--ceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442          20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQS--RYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS   97 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~   97 (111)
                      ..+..|+++.|.|.+.|.|.|.+.|+++|..+.....  ......   ....|.|.++.. .|.|.|.|.+.|..|.. .
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~---~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~-~   89 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN---QHWSLIMESVVP-SDKGNYTCVVENEYGSI-N   89 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEG---GGTEEEECSCCG-GGCEEEEEEEEETTEEE-E
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcC---CcEEEEECCCCc-ccCEEEEEEEEECCCEE-E
Confidence            4577899999999999999999999999998854321  112221   334599999998 99999999999999874 7


Q ss_pred             eEEEEEE
Q psy2442          98 AEASLTV  104 (111)
Q Consensus        98 ~~~~l~~  104 (111)
                      ..+.|.|
T Consensus        90 ~~~~l~V   96 (97)
T d3dara1          90 HTYHLDV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7777765

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.6e-15  Score=74.52  Aligned_cols=100  Identities=16%  Similarity=0.224  Sum_probs=70.9

Q ss_pred             EecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceE--EEeCC-CCCeEEEEccCCCCCCCe
Q psy2442           6 RFLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYM--VQEFP-PGGSLLRIEPVRHARDDA   82 (111)
Q Consensus         6 ~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~~~-~~~~~l~~~~~~~~~d~g   82 (111)
                      +|+.+|.+....+   ...+....+.|.+.|.|.|.+.|++++..+... .+..  ..... .....|.+.++.. .|.|
T Consensus         1 tV~~PP~i~~~~~---~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~-~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G   75 (105)
T d1wwca_           1 TVYYPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRES-KIIHVEYYQEGEISEGCLLFNKPTH-YNNG   75 (105)
T ss_dssp             CCCCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEECCCS-SSEEEEEEECSSEEEEEEEEESCCG-GGCE
T ss_pred             CEEcCCeeEEeCC---CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCC-cceeeeEEeecccceEEEEEeeccc-ccce
Confidence            3667777643222   123445567889999999999999999988654 2222  22111 1124488999998 9999


Q ss_pred             EEEEEeeeCCCceEeeEEEEEEecCCCCC
Q psy2442          83 VYECVAENGVGDAVSAEASLTVYEGEEKP  111 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~~~~~~~p  111 (111)
                      .|.|.+.|..|.. +..+.+.+.++|.++
T Consensus        76 ~Y~C~a~N~~G~~-~~~~~v~V~~~P~P~  103 (105)
T d1wwca_          76 NYTLIAKNPLGTA-NQTINGHFLKEPFPV  103 (105)
T ss_dssp             EEEEEEEETTEEE-EEEEEECCSCCCCCS
T ss_pred             EEEEEEEcCCCEE-EEEEEEEEEeCCCCC
Confidence            9999999999875 888888888887763

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.6e-15  Score=72.73  Aligned_cols=94  Identities=24%  Similarity=0.423  Sum_probs=68.8

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeecc-----CCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVS-----GTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      +||.+...+....+..|+.+.|.|.+.+.|.+ .+.|++.+....     ....++...... ....|.|.++....|.|
T Consensus         1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~v~~~~D~G   79 (101)
T d3b5ha1           1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ-GRSELHIENLNMEADPG   79 (101)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEET-TEEEEEECSCCTTTSSE
T ss_pred             CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCC-CEEEEEEeccccccCCE
Confidence            47888877777889999999999999998877 799998653321     112344443322 44568898887316899


Q ss_pred             EEEEEeeeCCCceEeeEEEEEE
Q psy2442          83 VYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                      .|.|.+.|..|.. ...+.|.|
T Consensus        80 ~Y~C~A~N~~G~~-~~~~~L~V  100 (101)
T d3b5ha1          80 QYRCNGTSSKGSD-QAIITLRV  100 (101)
T ss_dssp             EEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEEEEEECCCEE-EEEEEEEE
Confidence            9999999999875 66666655

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.1e-16  Score=73.47  Aligned_cols=75  Identities=13%  Similarity=0.209  Sum_probs=61.3

Q ss_pred             eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeE
Q psy2442          20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSAE   99 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~   99 (111)
                      ..+.+|++++|.|.+.+.|.|.+.|++.+.....            ....|.|.++.. .|+|.|.|.+.|..|.. ...
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~------------~~~~l~i~~v~~-~DsG~Y~C~a~N~~g~~-~~~   74 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ------------GGKTLSVSQLEL-QDSGTWTCTVLQNQKKV-EFK   74 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE------------ESSEEEESSCCG-GGCEEEEEEEEETTEEE-EEE
T ss_pred             eEEECCCeEEEEEEeEcCCchheEEEeeccccee------------eeeeeeeeeccc-ccccEEEEEEEeCCCEE-EEE
Confidence            4688999999999999999999999987554321            234488999998 99999999999998874 778


Q ss_pred             EEEEEecCC
Q psy2442         100 ASLTVYEGE  108 (111)
Q Consensus       100 ~~l~~~~~~  108 (111)
                      +.|.|..-|
T Consensus        75 ~~v~V~~~~   83 (84)
T d2nxyb2          75 IDIVVLAFQ   83 (84)
T ss_dssp             EEECEECCC
T ss_pred             EEEEEEecC
Confidence            888777654

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.4e-15  Score=71.04  Aligned_cols=81  Identities=19%  Similarity=0.327  Sum_probs=63.0

Q ss_pred             cceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442          18 RNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS   97 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~   97 (111)
                      ..+.+..|+.+.|.|.+.+.|.|.+.|++.+..+...  ......   ....|.|.++.. .|.|.|.|.+.|..|.. +
T Consensus         9 ~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~---~~~~L~I~~v~~-~d~G~Y~C~a~N~~g~~-~   81 (90)
T d1vcaa2           9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG--KVTNEG---TTSTLTMNPVSF-GNEHSYLCTATCESRKL-E   81 (90)
T ss_dssp             SEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS--EEEEET---TEEEEEESSCCG-GGCSEEEEEEEETTEEE-E
T ss_pred             CcEEEECCCEEEEEEeccCCCCceEEEEecCccceee--eeeeec---CCcEEEEecccc-cccceEEEEEEeCCCEE-E
Confidence            3355678999999999999999999999987765322  222211   456699999998 99999999999999874 7


Q ss_pred             eEEEEEEe
Q psy2442          98 AEASLTVY  105 (111)
Q Consensus        98 ~~~~l~~~  105 (111)
                      ..+.|.|.
T Consensus        82 ~~~~v~V~   89 (90)
T d1vcaa2          82 KGIQVEIY   89 (90)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            77777664

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3e-15  Score=71.51  Aligned_cols=78  Identities=17%  Similarity=0.134  Sum_probs=61.6

Q ss_pred             eeeecCCcEEEEEEEeccCC-CeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEee
Q psy2442          20 QAVKAGGITSFYCIARGDPI-PVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSA   98 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~   98 (111)
                      ..+.+|+.++|.|.+.+.++ ..+.|+++|..+....          ....|.+..+.. .|+|.|.|.+.|..+...+.
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~----------~~~~l~i~~~~~-~dsG~Y~C~a~n~~~~~~S~   78 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY----------ENHNISITNATV-EDSGTYYCTGKVWQLDYESE   78 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC----------CSSEEEESSCCG-GGCEEEEEEEEETTEEEECC
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc----------ccceEEEeeeee-ecCcEEEEEEEeCCCCeEee
Confidence            46789999999999876544 4789999998875321          334488999998 99999999999987765467


Q ss_pred             EEEEEEecCC
Q psy2442          99 EASLTVYEGE  108 (111)
Q Consensus        99 ~~~l~~~~~~  108 (111)
                      .+.|.|.++|
T Consensus        79 ~v~i~V~~~P   88 (89)
T d1f2qa2          79 PLNITVIKAP   88 (89)
T ss_dssp             CEEEEEECSC
T ss_pred             eEEEEEEeCC
Confidence            7888888776

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.8e-17  Score=78.04  Aligned_cols=88  Identities=20%  Similarity=0.236  Sum_probs=67.4

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCe-EEEEEe
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDA-VYECVA   88 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g-~y~c~~   88 (111)
                      .|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+.......    .......|.+.++.. .|.| .|.|.+
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~----~~~~~~~L~i~~~~~-~d~G~~Y~C~a   76 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS----GGLPSLGLTLANVTS-DLNRKNVTCWA   76 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC----CCSSEEEEEEESCCS-TTTTCCEEECC
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeee----eeccceeEEEccccc-cccceEEEEEE
Confidence            5777777778889999999999999999999999999987664211111    111335589999998 9998 799999


Q ss_pred             eeCCCceEeeEEEEE
Q psy2442          89 ENGVGDAVSAEASLT  103 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~  103 (111)
                      .|..|.. ...+.|.
T Consensus        77 ~N~~G~~-~~s~~l~   90 (92)
T d2ifga1          77 ENDVGRA-EVSVQVN   90 (92)
T ss_dssp             EETTEEC-CEEECCC
T ss_pred             EcCCCEE-EEEEEEE
Confidence            9999874 5555543

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.8e-15  Score=76.79  Aligned_cols=86  Identities=24%  Similarity=0.422  Sum_probs=65.0

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCC----------------------------CCceEEEeCCCCCe
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGT----------------------------QSRYMVQEFPPGGS   68 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~----------------------------~~~~~~~~~~~~~~   68 (111)
                      +..+.+..|+.++|.|.+.|.|.|.+.|++++..+...                            ..++...... ...
T Consensus        16 ~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~   94 (130)
T d1gxea_          16 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTK-DRS   94 (130)
T ss_dssp             CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEET-TEE
T ss_pred             CCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECC-CEE
Confidence            45678889999999999999999999999876554211                            1122222211 335


Q ss_pred             EEEEccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          69 LLRIEPVRHARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        69 ~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      .|.|.++.. .|+|.|.|.+.|..|.. ...+.|.|.
T Consensus        95 ~L~I~~v~~-~D~G~Y~C~a~N~~G~~-~~~~~l~V~  129 (130)
T d1gxea_          95 IFTVEGAEK-EDEGVYTVTVKNPVGED-QVNLTVKVI  129 (130)
T ss_dssp             EEECSCCCT-TTCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             EEEECcCCh-hcCEEEEEEEEECCCEE-EEEEEEEEE
Confidence            599999998 99999999999999975 777777764

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7e-16  Score=74.25  Aligned_cols=80  Identities=13%  Similarity=0.170  Sum_probs=62.4

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCC-CeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPI-PVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYEC   86 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c   86 (111)
                      ..+|.+...+..+.+.+|+++.|.|.+.+.++ +.+.|++++..+... .+....    ....|.|.++.. .|+|.|.|
T Consensus         4 ~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~-~~~~~~----~~~~L~I~~v~~-~D~G~Y~C   77 (93)
T d1n26a1           4 RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH-PSRWAG----MGRRLLLRSVQL-HDSGNYSC   77 (93)
T ss_dssp             SCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCC-CEEEEE----ESSEEEECSCCG-GGCEEEEE
T ss_pred             CCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccce-eeEEec----CCCEEEECCCCh-hcCEEEEE
Confidence            34677777777788889999999999988665 489999998887654 333332    334599999998 99999999


Q ss_pred             EeeeCCC
Q psy2442          87 VAENGVG   93 (111)
Q Consensus        87 ~~~~~~~   93 (111)
                      .+.|..+
T Consensus        78 ~a~n~~~   84 (93)
T d1n26a1          78 YRAGRPA   84 (93)
T ss_dssp             ESSSSCS
T ss_pred             EECCccc
Confidence            9988654

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.62  E-value=5.6e-15  Score=70.38  Aligned_cols=77  Identities=19%  Similarity=0.296  Sum_probs=58.6

Q ss_pred             eeeecCCcEEEEEEEecc-CCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEee
Q psy2442          20 QAVKAGGITSFYCIARGD-PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVSA   98 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~   98 (111)
                      ..+.+|++++|.|.+.+. |.+.+.|++++..+...       .   ....|.|..+.. +|+|.|.|.+.|..|...+.
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~-------~---~~~~l~i~~v~~-~dsG~Y~C~a~n~~g~~~S~   78 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS-------R---SDPNFSIPQANH-SHSGDYHCTGNIGYTLYSSK   78 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-------S---SCCEEEETTCCG-GGCEEEEEEEEETTEEEECC
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc-------c---cccccccCccCH-HHCCeEEEEEEeCCCCEEee
Confidence            467899999999998654 55589999998775321       0   234488999998 99999999999988754355


Q ss_pred             EEEEEEecC
Q psy2442          99 EASLTVYEG  107 (111)
Q Consensus        99 ~~~l~~~~~  107 (111)
                      .+.|.|.+|
T Consensus        79 ~v~l~V~~P   87 (88)
T d2fcba2          79 PVTITVQAP   87 (88)
T ss_dssp             CEEEEECCC
T ss_pred             eEEEEEeCC
Confidence            677777654

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=8.1e-15  Score=69.92  Aligned_cols=80  Identities=26%  Similarity=0.422  Sum_probs=62.3

Q ss_pred             cCcceeeecCCcEEEEEEEe-ccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          16 RPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      .+....+..|+++.|.|.+. +.|.+.+.|++++..+...  +...     ....|.|.++.. .|+|.|.|.+.|..|.
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~--~~~~-----~~~~L~i~~v~~-~d~G~Y~C~a~N~~G~   79 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS--RAMD-----FNGILTIRNVQP-SDAGTYVCTGSNMFAM   79 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT--TEEE-----ETTEEEECSCCG-GGCEEEEEEEECSSCE
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecc--ccEe-----eceEEEEecCCc-ccCEEEEEEEEECCCE
Confidence            35556788999999999986 5777899999988776532  2222     234599999998 9999999999999987


Q ss_pred             eEeeEEEEEE
Q psy2442          95 AVSAEASLTV  104 (111)
Q Consensus        95 ~~~~~~~l~~  104 (111)
                      . ...+.|.|
T Consensus        80 ~-~~~~~l~V   88 (89)
T d1gl4b_          80 D-QGTATLHV   88 (89)
T ss_dssp             E-EEEEEEEE
T ss_pred             E-EEEEEEEE
Confidence            4 66666655

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.1e-14  Score=69.55  Aligned_cols=78  Identities=21%  Similarity=0.262  Sum_probs=59.8

Q ss_pred             cceeeecCCcEEEEEEEe-ccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceE
Q psy2442          18 RNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAV   96 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~   96 (111)
                      ..+.+..|+++.|.|.+. +.|.+.+.|.+.+..+.    ......   ....|.|.++.. .|+|.|.|.+.|..|.. 
T Consensus        11 ~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~----~~~~~~---~~~~L~i~~v~~-~D~G~Y~C~Asn~~g~~-   81 (90)
T d1gsma1          11 PVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG----AVQSDT---GRSVLTVRNASL-SAAGTRVCVGSCGGRTF-   81 (90)
T ss_dssp             SEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC----CEEEES---SEEEEEECSCCG-GGCEEEEEEEEETTEEE-
T ss_pred             CeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee----eeeccC---ceeeEEcCccCh-hhCCcEEEEEEeCCCcE-
Confidence            446778999999999875 78888999998766542    112221   456699999998 99999999999988764 


Q ss_pred             eeEEEEEE
Q psy2442          97 SAEASLTV  104 (111)
Q Consensus        97 ~~~~~l~~  104 (111)
                      +..+.|.|
T Consensus        82 ~~s~~l~V   89 (90)
T d1gsma1          82 QHTVQLLV   89 (90)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            77777665

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.61  E-value=1.3e-14  Score=71.55  Aligned_cols=93  Identities=29%  Similarity=0.400  Sum_probs=64.1

Q ss_pred             CCeeEEc-CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccC----C-CCce------EEEeCCCCCeEEEEccCCC
Q psy2442          10 PPEITLR-PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSG----T-QSRY------MVQEFPPGGSLLRIEPVRH   77 (111)
Q Consensus        10 ~p~~~~~-~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~----~-~~~~------~~~~~~~~~~~l~~~~~~~   77 (111)
                      +|.+... +++..+..|+++.|.|.+.+.|.|.+.|++++.....    . ....      ...........|.+.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            4666533 5778899999999999999999999999986543211    0 0000      0111111234589999998


Q ss_pred             CCCCeEEEEEeeeCCCceEeeEEEEEE
Q psy2442          78 ARDDAVYECVAENGVGDAVSAEASLTV  104 (111)
Q Consensus        78 ~~d~g~y~c~~~~~~~~~~~~~~~l~~  104 (111)
                       .|.|.|.|.+.|..|.. .....|.|
T Consensus        84 -~D~G~Y~C~a~N~~G~~-~~~~~L~V  108 (109)
T d2fdbp2          84 -EDAGEYTCLAGNSIGIS-FHSAWLTV  108 (109)
T ss_dssp             -GGCEEEEEEEECSSCEE-EEEEEEEE
T ss_pred             -HHCeEEEEEEEECCCEE-EEEEEEEE
Confidence             99999999999999975 66777665

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.8e-14  Score=70.53  Aligned_cols=97  Identities=18%  Similarity=0.225  Sum_probs=71.1

Q ss_pred             ecCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEE--eCC--CCCeEEEEccCCCCCCCe
Q psy2442           7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQ--EFP--PGGSLLRIEPVRHARDDA   82 (111)
Q Consensus         7 v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~--~~~--~~~~~l~~~~~~~~~d~g   82 (111)
                      |..+|.+....   ....++...+.|.+.|.|.|.+.|++++..+... .+....  ...  .....|.+..+.. .|.|
T Consensus         1 v~~pP~it~~~---~~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G   75 (103)
T d1wwbx_           1 VHFAPTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNES-KYICTKIHVTNHTEYHGCLQLDNPTH-MNNG   75 (103)
T ss_dssp             CCCCCCCCCCC---CCCCCCEEEEEEEEECSSCCEEEEEETTEEECCC-SSEEEEEEEECSSEEEEEEEEESCCG-GGCE
T ss_pred             CccCCeeEEcC---CCccceeEEEEEEEEEeCCCEEEEEECCEEeeee-eeeeeeecccccccceEEEEECCCCH-HhCc
Confidence            45567664322   2235777889999999999999999999998643 332221  111  1123589999998 9999


Q ss_pred             EEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          83 VYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        83 ~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      .|.|.+.|..|.. +..+.|.+...|+
T Consensus        76 ~Y~C~a~N~~G~~-~~~~~v~V~~~P~  101 (103)
T d1wwbx_          76 DYTLIAKNEYGKD-EKQISAHFMGWPG  101 (103)
T ss_dssp             EEEEEEECSSCEE-EEEEEECCSCCCC
T ss_pred             eEEEEEeccCCEE-EEEEEEEEEeCCC
Confidence            9999999999985 8888888877775

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.3e-14  Score=72.06  Aligned_cols=94  Identities=18%  Similarity=0.181  Sum_probs=67.0

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccC---CCeEEEEECCeecc--CCCCceEEEe---CCC--CCeEEEEccCCCCCCCeE
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDP---IPVIQWRKNGKRVS--GTQSRYMVQE---FPP--GGSLLRIEPVRHARDDAV   83 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~~~~--~~~~~~~~~~---~~~--~~~~l~~~~~~~~~d~g~   83 (111)
                      ...++.+.+..|+.++|.|.+.+.|   .|.+.|++++....  ....++....   ...  ....|.|.++.. .|+|.
T Consensus         4 ~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~   82 (113)
T d2dava1           4 IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD-NFAGN   82 (113)
T ss_dssp             CSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCT-TSCEE
T ss_pred             eECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCH-HHCeE
Confidence            3456678899999999999999987   46899999865431  1112222111   010  123488999998 99999


Q ss_pred             EEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          84 YECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        84 y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      |.|.+.|..|.. +..+.|.|..++.
T Consensus        83 Y~C~a~N~~G~~-~~~~~L~V~~~~~  107 (113)
T d2dava1          83 YRCEVTYKDKFD-SCSFDLEVHESTG  107 (113)
T ss_dssp             EEEEEECSSCEE-EECCEEEEECCCC
T ss_pred             EEEEEEeCCCEE-EEEEEEEEEcCCC
Confidence            999999999974 7788888876553

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.7e-14  Score=70.11  Aligned_cols=94  Identities=20%  Similarity=0.240  Sum_probs=68.2

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccC---CCeEEEEECCeeccC--CCCceEEEe---CCC--CCeEEEEccCCCCCCC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDP---IPVIQWRKNGKRVSG--TQSRYMVQE---FPP--GGSLLRIEPVRHARDD   81 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~~~~~--~~~~~~~~~---~~~--~~~~l~~~~~~~~~d~   81 (111)
                      .+...+..+.+..|++++|.|.+.+.|   .|.+.|++++.....  ...++....   ...  ....|.|.+++. .|+
T Consensus         6 ~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~   84 (110)
T d2avga1           6 LFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP-AFT   84 (110)
T ss_dssp             SEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCT-TCC
T ss_pred             EeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCH-HHC
Confidence            456677888999999999999999988   468999987654321  112222211   010  123488999998 999


Q ss_pred             eEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          82 AVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        82 g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      |.|.|.+.|..|.. .+.+.|.|...
T Consensus        85 G~Y~C~a~N~~G~~-~~~~~L~V~~~  109 (110)
T d2avga1          85 GGYRCEVSTKDKFD-CSNFNLTVHEA  109 (110)
T ss_dssp             EEEEEEEEETTEEE-EEEEEEEEESC
T ss_pred             cEEEEEEEECCCeE-EEEEEEEEEec
Confidence            99999999999885 88888887653

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.58  E-value=9.6e-15  Score=69.68  Aligned_cols=77  Identities=17%  Similarity=0.224  Sum_probs=57.3

Q ss_pred             ceeeecCCcEEEEEEEec-cCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceEe
Q psy2442          19 NQAVKAGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAVS   97 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~   97 (111)
                      ...+.+|++++|.|...+ .|.+.+.|+++|..+...       .   ....+.|..+.. .|+|.|.|.+.|..+...+
T Consensus        11 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~-------~---~~~~l~I~~v~~-~dsG~Y~C~a~n~~~~~~S   79 (89)
T d1fnla2          11 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-------H---HNSDFHIPKATL-KDSGSYFCRGLVGSKNVSS   79 (89)
T ss_dssp             CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-------E---ECCCEEESSCCG-GGCEEEEEEEEETTEEEEC
T ss_pred             CCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee-------c---cccccEECccce-eccceEEEEEEeCCCCeEE
Confidence            346789999999999864 455589999998775321       1   223388999998 9999999999998775434


Q ss_pred             eEEEEEEec
Q psy2442          98 AEASLTVYE  106 (111)
Q Consensus        98 ~~~~l~~~~  106 (111)
                      ..+.|.|.+
T Consensus        80 ~~v~itV~E   88 (89)
T d1fnla2          80 ETVNITITQ   88 (89)
T ss_dssp             CCEEEEEEC
T ss_pred             eeEEEEEEe
Confidence            567777654

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.5e-15  Score=71.79  Aligned_cols=90  Identities=21%  Similarity=0.226  Sum_probs=62.7

Q ss_pred             EcCcceeeecCCcEEEEEEEeccC-CCeEEEEECCeeccCC--CCceEEEeCC-CCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDP-IPVIQWRKNGKRVSGT--QSRYMVQEFP-PGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~--~~~~~~~~~~-~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      ..+....+..|+++.|.|.+.+.| .|.+.|++++..+...  .......... .....|.|.++.. .|.|.|.|.+.|
T Consensus         8 ~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N   86 (104)
T d2aw2a1           8 KRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLP-NDNGSYRCSANF   86 (104)
T ss_dssp             CTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCG-GGCEEEEEEEEE
T ss_pred             ecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccH-HHCCeEEEEEEc
Confidence            345556888999999999999988 4799999987655321  1222222211 1123488899998 999999999999


Q ss_pred             CCCceEeeEEEEEEe
Q psy2442          91 GVGDAVSAEASLTVY  105 (111)
Q Consensus        91 ~~~~~~~~~~~l~~~  105 (111)
                      ..|........+.|.
T Consensus        87 ~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          87 QSNLIESHSTTLYVT  101 (104)
T ss_dssp             TTEEEECCCEEEEEE
T ss_pred             CCCeEEEEEEEEEEE
Confidence            988643445666654

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.4e-15  Score=71.83  Aligned_cols=74  Identities=22%  Similarity=0.344  Sum_probs=58.4

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCceE
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGDAV   96 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~   96 (111)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... .              .+..++. .|+|.|.|.+.|..|.. 
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~-~--------------~~~~v~~-~d~G~Y~C~A~N~~G~~-   73 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-G--------------ESVTVTR-DLEGTYLCRARSTQGEV-   73 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT-T--------------SCEECCG-GGCEEEEEEEEETTEEE-
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee-e--------------eeecccc-CCCCEEEEEEEcCCCEE-
Confidence            45578889999999999999999999999987765422 1              1234566 89999999999999874 


Q ss_pred             eeEEEEEEecC
Q psy2442          97 SAEASLTVYEG  107 (111)
Q Consensus        97 ~~~~~l~~~~~  107 (111)
                      +..+.|.|..|
T Consensus        74 ~~~~~l~V~~P   84 (84)
T d2oz4a3          74 TREVTVNVLSP   84 (84)
T ss_dssp             EEEEEEEEECC
T ss_pred             EEEEEEEEECC
Confidence            77788877653

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.2e-14  Score=67.98  Aligned_cols=92  Identities=23%  Similarity=0.274  Sum_probs=61.4

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEE-EE-CCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQW-RK-NGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      +|.+. ..+++.+..|+++.|.|.+.+.|.|.+.| +. .+.... ...+............|.|.++.. .|.|.|.|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~   78 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA-PLKEIKVTSSRRFIASFNVVNTTK-RDAGKYRCM   78 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCC-CEEEEEEEETTEEEEEEEECSCCG-GGCSEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeee-cCCceeEEEeecCceEEEECCCCH-HHCeEEEEE
Confidence            57775 57778999999999999999998775443 32 222221 112222222221234599999998 999999999


Q ss_pred             eeeCCCceEeeEEEEEE
Q psy2442          88 AENGVGDAVSAEASLTV  104 (111)
Q Consensus        88 ~~~~~~~~~~~~~~l~~  104 (111)
                      +.|..|...+....|.|
T Consensus        79 a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          79 IRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEeCCCeEEEEEEEEEE
Confidence            99999864344445544

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1e-13  Score=68.22  Aligned_cols=82  Identities=22%  Similarity=0.278  Sum_probs=59.8

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCC-----CCeEEEEccCCCCCCCeEEEEEeeeCCCceEeeE
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPP-----GGSLLRIEPVRHARDDAVYECVAENGVGDAVSAE   99 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~d~g~y~c~~~~~~~~~~~~~   99 (111)
                      ++...+.|.+.|.|.|.+.|++++..+..............     ....|.+.++.. .|.|.|.|.+.|..|.. ...
T Consensus        15 ~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~A~N~~G~~-~~~   92 (107)
T d1he7a_          15 MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH-VNNGNYTLLAANPFGQA-SAS   92 (107)
T ss_dssp             CCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCG-GGCEEEEEEEEETTEEE-EEE
T ss_pred             EEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccH-HHCcEEEEEEEeCCCEE-EEE
Confidence            33344556899999999999999999865422222211111     113488899998 99999999999999985 888


Q ss_pred             EEEEEecCC
Q psy2442         100 ASLTVYEGE  108 (111)
Q Consensus       100 ~~l~~~~~~  108 (111)
                      +.+.+..+|
T Consensus        93 i~v~v~~~P  101 (107)
T d1he7a_          93 IMAAFMDNP  101 (107)
T ss_dssp             EEECCCSCT
T ss_pred             EEEEEEcCC
Confidence            888887776

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.5e-13  Score=64.80  Aligned_cols=73  Identities=21%  Similarity=0.318  Sum_probs=56.0

Q ss_pred             EcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCC-CceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQ-SRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      .+.++..+..|+++.|.|.+. .|.+.+.|++++..+.... .++...... ....|.|.++.. .|+|.|.|.+.|
T Consensus         5 ~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~-~~~~L~I~~v~~-~D~G~Y~C~a~n   78 (90)
T d1x44a1           5 KQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEG-KKHILIIEGATK-ADAAEYSVMTTG   78 (90)
T ss_dssp             BCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEET-TEEEEEEEEECT-TTCSEEEEEETT
T ss_pred             cCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeC-CccEEEECcccc-ccCEEEEEEEec
Confidence            345677899999999999984 5777899999998875432 334443322 345699999998 999999999866

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=2.2e-13  Score=67.18  Aligned_cols=85  Identities=27%  Similarity=0.435  Sum_probs=58.8

Q ss_pred             eeeecCCcEEEEEEEe-ccCCCeEEEEECCeeccCCCCce-------EEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeC
Q psy2442          20 QAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGTQSRY-------MVQEFPPGGSLLRIEPVRHARDDAVYECVAENG   91 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~   91 (111)
                      ..+..|+.+.|.|.+. +.|.+.+.|++++..+.......       ...... ....|.|.++.. .|.|.|.|.+.|.
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~I~~v~~-~D~G~Y~C~a~N~   89 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDP-KSGDLIFDPVTA-FDSGEYYCQAQNG   89 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECT-TTCCEEESSCCG-GGCEEEEEEEECS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEee-cccceEECCCCc-cCCEEEEEEEEEC
Confidence            3577899999999974 78899999999988774321110       011111 233488999998 9999999999999


Q ss_pred             CCceE-eeEEEEEEec
Q psy2442          92 VGDAV-SAEASLTVYE  106 (111)
Q Consensus        92 ~~~~~-~~~~~l~~~~  106 (111)
                      .|... +..+.+.|.+
T Consensus        90 ~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          90 YGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             SSCCEECCCEEEEEES
T ss_pred             CCcEEEEEEEEEEEEe
Confidence            88642 3355666554

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.4e-13  Score=65.50  Aligned_cols=91  Identities=21%  Similarity=0.279  Sum_probs=64.9

Q ss_pred             CeeEEcCc-ceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceE---EEeCCC-------CCeEEEEccCCCCC
Q psy2442          11 PEITLRPR-NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYM---VQEFPP-------GGSLLRIEPVRHAR   79 (111)
Q Consensus        11 p~~~~~~~-~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~---~~~~~~-------~~~~l~~~~~~~~~   79 (111)
                      |.+..+.. .+.+..|+.+.|.|.+.+.|.+.+.|+++|..+........   ......       ....|.|..+.. .
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~   80 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIES-R   80 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCG-G
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecch-H
Confidence            55554443 35577899999999999999999999999988754322111   111000       124599999998 9


Q ss_pred             CCe-EEEEEeeeCCCceEeeEEEEE
Q psy2442          80 DDA-VYECVAENGVGDAVSAEASLT  103 (111)
Q Consensus        80 d~g-~y~c~~~~~~~~~~~~~~~l~  103 (111)
                      |.| .|.|.+.|..|.. ...+.|.
T Consensus        81 D~g~~Y~C~A~N~~G~~-~~~i~L~  104 (107)
T d1iray3          81 FYKHPFTCFAKNTHGID-AAYIQLI  104 (107)
T ss_dssp             GGSSCEEEEEECSSCEE-EEEEEEE
T ss_pred             HCCcEEEEEEEeCCCeE-EEEEEEE
Confidence            999 5999999999975 6666664

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4e-13  Score=64.57  Aligned_cols=70  Identities=23%  Similarity=0.380  Sum_probs=54.9

Q ss_pred             ceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeC
Q psy2442          19 NQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENG   91 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~   91 (111)
                      ...+..|+.+.|.|.+.+ |.+.+.|++++..+.....++.+.... ....|.|.++.. .|+|.|.|.+.|.
T Consensus        15 ~~~v~~G~~v~l~c~v~~-p~~~v~W~k~g~~i~~~~~~~~~~~~~-~~~~L~I~~~~~-~D~G~Y~c~a~n~   84 (94)
T d1pd6a_          15 AYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIG-AKRTLTISQCSL-ADDAAYQCVVGGE   84 (94)
T ss_dssp             EEEEETTSCEEEEEECSS-SSSCCEEEESSSEECCCSSSSEEEEET-TEEEEEECSCSS-SSCEEEEEEETTE
T ss_pred             CEEECcCCeEEEEEEECC-CCceEEEEEcCccceeeeeeEeeeccC-CeEEeecCCCCc-eecEEEEEEEeeE
Confidence            356889999999999854 778999999999986544455544332 445699999998 9999999998663

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=6.7e-14  Score=67.08  Aligned_cols=69  Identities=22%  Similarity=0.465  Sum_probs=55.3

Q ss_pred             eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      ..+.+|+++.|.|.+.+ +.+.+.|++++..+.....++...    ....|.|.++.. .|+|.|.|.+.|..+.
T Consensus         7 ~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~----~~~~L~I~~v~~-~DsG~Y~C~A~n~~g~   75 (92)
T d1olza1           7 HFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLM----GRKNLLIFNLSE-GDSGVYQCLSEERVKN   75 (92)
T ss_dssp             EEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCT----TTTCEEECSCCG-GGCEEEEEEEEEECSS
T ss_pred             eeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecc----eeeEEEECCCCH-HHCcEEEEEEEEcCCC
Confidence            57889999999999988 667999999998876544444332    223499999998 9999999999997764

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=3.1e-13  Score=65.84  Aligned_cols=86  Identities=16%  Similarity=0.301  Sum_probs=60.9

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccC-----------CCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSG-----------TQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      |.+..++..+.+..|+.+.|.|...+.|.|.+.|++.+.....           ...+...     ....|.|.++.. .
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~tL~I~~v~~-~   75 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF-----SSSGITFSSVTR-K   75 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE-----ETTEEEESCCCG-G
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEe-----cCCEEEEeECCc-c
Confidence            4445556667889999999999999999999999875433210           0111111     123489999998 9


Q ss_pred             CCeEEEEEeeeCCCceEeeEEEEE
Q psy2442          80 DDAVYECVAENGVGDAVSAEASLT  103 (111)
Q Consensus        80 d~g~y~c~~~~~~~~~~~~~~~l~  103 (111)
                      |+|.|.|.+.|..|.. ...+.+.
T Consensus        76 D~G~Y~C~a~n~~g~~-~~~~~v~   98 (102)
T d1f97a1          76 DNGEYTCMVSEEGGQN-YGEVSIH   98 (102)
T ss_dssp             GCEEEEEEEEETTSSS-EEEEEEE
T ss_pred             CCEEEEEEEEECCCCE-EEEEEEE
Confidence            9999999999998864 4444443

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.48  E-value=2.8e-13  Score=63.95  Aligned_cols=78  Identities=22%  Similarity=0.284  Sum_probs=58.7

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCC-eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIP-VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      |.+...+....+.+|+.++|.|.+.+.+.+ .+.|+++|..+...            ...|.|..+.. .|+|.|.|.+.
T Consensus         5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~------------~~~l~i~~v~~-~dsG~Y~C~a~   71 (85)
T d2fcba1           5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH------------TQPSYRFKANN-NDSGEYTCQTG   71 (85)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC------------CSSEEEEECCG-GGCEEEEEECT
T ss_pred             CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc------------ccceEEeeccc-cCCcEEEEECC
Confidence            345566666788999999999999887766 57889998887543            22377888888 99999999998


Q ss_pred             eCCCceEeeEEEEEE
Q psy2442          90 NGVGDAVSAEASLTV  104 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~  104 (111)
                      |..+   +..+.|.|
T Consensus        72 ns~~---S~~v~l~V   83 (85)
T d2fcba1          72 QTSL---SDPVHLTV   83 (85)
T ss_dssp             TSBC---CCCEEEEE
T ss_pred             CCcc---cccEEEEE
Confidence            7653   34455554

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.7e-14  Score=68.12  Aligned_cols=84  Identities=13%  Similarity=0.294  Sum_probs=59.6

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCC-----------CCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGT-----------QSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .+...+..+.+..|+++.|.|...+.|.|.+.|++++..+...           ..+...     ....|.|.++.. .|
T Consensus         6 ~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~-~D   79 (105)
T d1nbqa1           6 TVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF-----LPTGITFKSVTR-ED   79 (105)
T ss_dssp             EEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEE-----ETTEEECSCCCT-TS
T ss_pred             EEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeee-----cCceEEEecccc-cc
Confidence            3344455578889999999999999999999999865433210           011111     123489999998 99


Q ss_pred             CeEEEEEeeeCCCceEeeEEEE
Q psy2442          81 DAVYECVAENGVGDAVSAEASL  102 (111)
Q Consensus        81 ~g~y~c~~~~~~~~~~~~~~~l  102 (111)
                      +|.|.|.+.|..|.. ...+.+
T Consensus        80 ~G~Y~C~a~n~~G~~-~~~~~v  100 (105)
T d1nbqa1          80 TGTYTCMVSEEGGNS-YGEVKV  100 (105)
T ss_dssp             CSEEEEEEEETTSSC-EECCEE
T ss_pred             eeeEEEEEEECCCCE-EEEEEE
Confidence            999999999998875 444333

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.48  E-value=4.8e-13  Score=62.99  Aligned_cols=71  Identities=20%  Similarity=0.257  Sum_probs=55.4

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCe-EEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      +|.+...+....+..|++++|.|.+.+.+.+. +.|++++..+..            ....|.|..+.. .|+|.|.|.+
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~i~~~~~-~d~G~Y~C~a   71 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------------QASSYFIDAATV-NDSGEYRCQT   71 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES------------SCSEEEESSCCG-GGCEEEEEEC
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee------------cceeeEecCCcc-cCCEEEEEEc
Confidence            45666677777899999999999999888774 567787776543            223488999998 9999999998


Q ss_pred             eeCCC
Q psy2442          89 ENGVG   93 (111)
Q Consensus        89 ~~~~~   93 (111)
                      .|...
T Consensus        72 ~~s~~   76 (84)
T d1fnla1          72 NLSTL   76 (84)
T ss_dssp             SSSCC
T ss_pred             cCCCc
Confidence            87543

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.6e-13  Score=63.18  Aligned_cols=78  Identities=22%  Similarity=0.316  Sum_probs=55.9

Q ss_pred             CeeEEcCcceeeecCCcEEEEEEEeccCCCe-EEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          11 PEITLRPRNQAVKAGGITSFYCIARGDPIPV-IQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        11 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      |.+...|....+.+|+.++|.|.+.+.+.+. ..|++++..+..            ....|.|..+.. .|+|.|.|.+.
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~i~~v~~-~d~G~Y~C~a~   68 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------------TNSSLNIVNAKF-EDSGEYKCQHQ   68 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC------------CSSEEEECSCCG-GGCEEEEEECT
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec------------ccceeEECCCCh-hhCCcEEEEec
Confidence            5666667667889999999999998888774 567888777643            223488899998 99999999998


Q ss_pred             eCCCceEeeEEEEEE
Q psy2442          90 NGVGDAVSAEASLTV  104 (111)
Q Consensus        90 ~~~~~~~~~~~~l~~  104 (111)
                      |...   +..+.|.|
T Consensus        69 ~s~~---S~~v~l~V   80 (82)
T d1f2qa1          69 QVNE---SEPVYLEV   80 (82)
T ss_dssp             TSSC---CCCEEEEE
T ss_pred             CCCC---cccEEEEE
Confidence            7654   33445544

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.45  E-value=1.5e-13  Score=67.34  Aligned_cols=75  Identities=19%  Similarity=0.176  Sum_probs=57.3

Q ss_pred             CcceeeecCCcEEEEEEE-eccCCCeEEEEECCeeccCC-CCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          17 PRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGT-QSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      ...+.+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ..+.....   ....|.|.++.. .|.|.|.|.+.|..|.
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~---~~~~L~I~~v~~-~D~G~Y~C~a~N~~g~   86 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ---TTGNLYIAKTEA-SDLGNYSCFATSHIDF   86 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECT---TTCCEEESSCCG-GGCEEEEEEEEEEETT
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeec---CCCEEeeccccc-ccCcEEEEEEEECCCC
Confidence            345688999999999996 68888999999998765422 23333322   334599999998 9999999999998776


Q ss_pred             e
Q psy2442          95 A   95 (111)
Q Consensus        95 ~   95 (111)
                      .
T Consensus        87 ~   87 (105)
T d1cs6a2          87 I   87 (105)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.8e-13  Score=64.80  Aligned_cols=87  Identities=17%  Similarity=0.203  Sum_probs=64.3

Q ss_pred             cCcceeeecCCcEEEEEEEe-ccCCCeEEEEECCeeccCC-CCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          16 RPRNQAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRVSGT-QSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      .+..+....|+.+.|.|.+. +.+.+.+.|++++..+... .....+..   ....|.|.++.. .|+|.|.|.+.|..|
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~-~D~G~Y~C~a~N~~g   83 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ---HKEKLWFVPAKV-EDSGHYYCVVRNSSY   83 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEE---ETTEEEETTCCG-GGCEEEEEEEEETTE
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEec---cCCEEEecccee-cCCEEEEEEEECCCC
Confidence            34446777899999999875 6788899999987654321 12222222   234599999998 999999999999988


Q ss_pred             ceEeeEEEEEEecC
Q psy2442          94 DAVSAEASLTVYEG  107 (111)
Q Consensus        94 ~~~~~~~~l~~~~~  107 (111)
                      .. ...+.|.|...
T Consensus        84 ~~-~~~~~L~V~~~   96 (101)
T d1iray1          84 CL-RIKISAKFVEN   96 (101)
T ss_dssp             EE-EEEEEEEEECC
T ss_pred             eE-EEEEEEEEEeC
Confidence            75 77888888754

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6e-14  Score=68.63  Aligned_cols=85  Identities=22%  Similarity=0.402  Sum_probs=58.3

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEE-eccCCCeEEEEECCeeccCCCCceEEEe-----CCCCCeEEEEccCCCCCCCeE
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGTQSRYMVQE-----FPPGGSLLRIEPVRHARDDAV   83 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~d~g~   83 (111)
                      ||.+........+..|+.+.|.|.+ .+.|.+.+.|++++..+...........     .......|.|.++.. .|.|.
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~-~D~G~   80 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA-SDTGE   80 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCG-GGCCC
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCc-ccCcE
Confidence            4444333334567889999999997 4788999999999888743211100000     000224488999998 99999


Q ss_pred             EEEEeeeCCCce
Q psy2442          84 YECVAENGVGDA   95 (111)
Q Consensus        84 y~c~~~~~~~~~   95 (111)
                      |.|.+.|..|..
T Consensus        81 Y~C~a~N~~G~~   92 (104)
T d1nbqa2          81 YSCEARNGYGTP   92 (104)
T ss_dssp             EEEEEECSSSCC
T ss_pred             EEEEEEECCCce
Confidence            999999998864

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.41  E-value=5.1e-14  Score=67.12  Aligned_cols=75  Identities=15%  Similarity=0.104  Sum_probs=59.4

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ..+..++.+..|+++.|.|.+ +.|.+.+.|+++|..+... .++.+.... ....|.|.++.. .|+|.|.|.+.|..
T Consensus         5 ~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~-~~~~~~~~~-~~~~L~I~~~~~-~D~G~Y~c~a~n~~   79 (89)
T d1tiua_           5 EKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTAS-PDCEIIEDG-KKHILILHNCQL-GMTGEVSFQAANAK   79 (89)
T ss_dssp             SBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSS-SSCEEEECS-SCEEEECCSCCS-CCCSEECCBCSSCB
T ss_pred             EcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccc-eeEEEEeec-eeEEEEEcCCCh-hcCEEEEEEECceE
Confidence            345567889999999999997 4677899999999988654 566555433 445699999998 99999999987754

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.4e-14  Score=71.30  Aligned_cols=101  Identities=23%  Similarity=0.350  Sum_probs=71.6

Q ss_pred             eEEecCCCeeEEcCcceeeecCCcEEEEEEEeccC-CCeEEEEECCeeccCC-CCceEEEeC---CCCCeEEEEccCCCC
Q psy2442           4 KVRFLDPPEITLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRKNGKRVSGT-QSRYMVQEF---PPGGSLLRIEPVRHA   78 (111)
Q Consensus         4 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~-~~~~~~~~~---~~~~~~l~~~~~~~~   78 (111)
                      .|+|..||.+.. +....+..|+.+.|.|.+.+.+ .+.+.|++++..+... ..++.....   +.....|.|.++.. 
T Consensus         1 TL~V~~Pp~i~~-~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-   78 (115)
T d2crya1           1 TLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR-   78 (115)
T ss_dssp             CCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCH-
T ss_pred             CeEEecCCEEec-CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccch-
Confidence            367888887754 4456778999999999998854 4578999988877532 133332211   11123488889888 


Q ss_pred             CC-CeEEEEEeeeCCCceEeeEEEEEEecC
Q psy2442          79 RD-DAVYECVAENGVGDAVSAEASLTVYEG  107 (111)
Q Consensus        79 ~d-~g~y~c~~~~~~~~~~~~~~~l~~~~~  107 (111)
                      .| .|.|.|.+.|..|.. +..+.|.|...
T Consensus        79 ~D~~G~Y~C~A~N~~G~~-~~~~~L~V~~~  107 (115)
T d2crya1          79 ADFQTIYNCTAWNSFGSD-TEIIRLKEQGS  107 (115)
T ss_dssp             HHHHSCEEEEEECSSCEE-EEEECCCCSCS
T ss_pred             hcCCeEEEEEEEECCCeE-EEEEEEEEECC
Confidence            88 589999999999985 77887777543

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.4e-12  Score=61.45  Aligned_cols=68  Identities=18%  Similarity=0.282  Sum_probs=53.7

Q ss_pred             eeecCCcEEEEE------EEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCCCc
Q psy2442          21 AVKAGGITSFYC------IARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGVGD   94 (111)
Q Consensus        21 ~~~~g~~~~l~c------~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~~~   94 (111)
                      .+..|....|.|      ...+.|.|.+.|++++..+.....++...     ...|.|.++.. .|+|.|.|.+.|..+.
T Consensus        10 ~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~-----~~~L~I~~v~~-~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2          10 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV-----KDRLIVMNVAE-KHRGNYTCHASYTYLG   83 (103)
T ss_dssp             EEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEE-----TTEEEESSCCG-GGCEEEEEEEEEEETT
T ss_pred             EEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEec-----CCEEEEccccc-ccCcEEEEEEEECcCC
Confidence            567899999999      45688889999999999987543333332     23499999998 9999999999987653

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.2e-12  Score=63.80  Aligned_cols=90  Identities=16%  Similarity=0.207  Sum_probs=61.4

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEec-cCCC--eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARG-DPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~-~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      .|+.+...+....+..|+.++|.|.+.+ .|.+  .+.|++++..+.....     ........|.+..... .|.|.|.
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~-----~~~~~~s~l~i~~~~~-dd~g~yt   76 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA-----VGEPAEVTTTVLVRRD-HHGAQFS   76 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC-----CTTTEEEEEEEECCSS-CSSCEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc-----ccccceEEEEEeeehh-HCCCEEE
Confidence            4667777776777889999999999986 4544  5789999888742100     0011234477777776 7889999


Q ss_pred             EEeeeCCCceEeeEEEEEEe
Q psy2442          86 CVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        86 c~~~~~~~~~~~~~~~l~~~  105 (111)
                      |.+.|.+|.. .....+.+.
T Consensus        77 C~A~n~~g~~-~~~~~~~~s   95 (103)
T d1iama1          77 CRTELDLRPQ-GLELFENTS   95 (103)
T ss_dssp             EEEEEECGGG-TSCEEEEEC
T ss_pred             EEEEeCCCCc-cCeEeeeEc
Confidence            9999988753 334444443

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9.4e-13  Score=64.56  Aligned_cols=78  Identities=8%  Similarity=0.037  Sum_probs=48.7

Q ss_pred             cCcceeeecCCcEEEEEEEec-c--CCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          16 RPRNQAVKAGGITSFYCIARG-D--PIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~-~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ......+..|+.++|.|.+.+ .  |.+.+.|++++..+..................|.+..... .|.|.|.|.+.|.+
T Consensus         8 ~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~-d~g~~ytC~A~n~~   86 (106)
T d1zxqa1           8 TLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADRE-DGHRNFSCLAVLDL   86 (106)
T ss_dssp             EEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGG-GGGCEEEEEEEEEC
T ss_pred             cCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehh-cCCcEEEEEEEecC
Confidence            344456789999999999986 3  3447899999988742210000000000123355555554 56679999999987


Q ss_pred             Cc
Q psy2442          93 GD   94 (111)
Q Consensus        93 ~~   94 (111)
                      +.
T Consensus        87 ~~   88 (106)
T d1zxqa1          87 MS   88 (106)
T ss_dssp             GG
T ss_pred             CC
Confidence            64

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.21  E-value=4.9e-11  Score=58.77  Aligned_cols=74  Identities=22%  Similarity=0.320  Sum_probs=52.3

Q ss_pred             eeecCCcEEEEEEE-eccCCCeEEEEECCeeccCC------CCceEEEeCCCCCeEEEEccCCCCCCCe---EEEEEeee
Q psy2442          21 AVKAGGITSFYCIA-RGDPIPVIQWRKNGKRVSGT------QSRYMVQEFPPGGSLLRIEPVRHARDDA---VYECVAEN   90 (111)
Q Consensus        21 ~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~d~g---~y~c~~~~   90 (111)
                      .+.+|+.+.|.|.+ .|.|.|.+.|++.+..+...      ..++...    ....|.+.++.. .|+|   .|.|.+.|
T Consensus        13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~-~D~gd~g~Y~C~A~N   87 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG----PDGNLYFTIVTK-EDVSDIYKYVCTAKN   87 (111)
T ss_dssp             CCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC----TTSCEEEEEECG-GGCCSSEEEEEEEEC
T ss_pred             cccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccc----cccccEEeeeEe-eccCCceEEEEEEEe
Confidence            46689999999986 89999999999976654211      1122221    234488888776 6655   79999999


Q ss_pred             CCCceEeeEE
Q psy2442          91 GVGDAVSAEA  100 (111)
Q Consensus        91 ~~~~~~~~~~  100 (111)
                      ..|.. ...+
T Consensus        88 ~~g~~-~~~~   96 (111)
T d1biha2          88 AAVDE-EVVL   96 (111)
T ss_dssp             TTCSS-CEEE
T ss_pred             CCCCc-eEEE
Confidence            98865 4444

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.6e-10  Score=55.11  Aligned_cols=77  Identities=19%  Similarity=0.225  Sum_probs=53.0

Q ss_pred             eeeecCCcEEEEEEEeccCCCeEEEEECCeeccCC-----------CCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGT-----------QSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      +....|++++|.|... .|.+.+.|++++..+...           ..+.....   ....|.|.++.. .|+|.|.|.+
T Consensus         5 v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~sL~I~~l~~-~DsG~Y~c~~   79 (93)
T d1ccza1           5 IYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDT---VSGSLTIYNLTS-SDEDEYEMES   79 (93)
T ss_dssp             EEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECT---TTCCEEECSCCG-GGCEEEEEEC
T ss_pred             EEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcC---CeeEEEEEecCh-hhCEEEEEEE
Confidence            4667899999999764 467789999988765210           11222211   234499999998 9999999999


Q ss_pred             eeCCCceEeeEEEEEE
Q psy2442          89 ENGVGDAVSAEASLTV  104 (111)
Q Consensus        89 ~~~~~~~~~~~~~l~~  104 (111)
                      .|..+..   .+.|.|
T Consensus        80 ~n~~~t~---~~~l~V   92 (93)
T d1ccza1          80 PNITDTM---KFFLYV   92 (93)
T ss_dssp             TTCCSCE---EEEEEE
T ss_pred             ECCCcEE---EEEEEE
Confidence            8876543   344444

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=6.9e-09  Score=51.76  Aligned_cols=90  Identities=18%  Similarity=0.193  Sum_probs=58.3

Q ss_pred             CcceeeecCCcEEEEEEEeccC---CCeEEEEECCeec-----------c-----CCCCceEEEeCC--CCCeEEEEccC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP---IPVIQWRKNGKRV-----------S-----GTQSRYMVQEFP--PGGSLLRIEPV   75 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~~~-----------~-----~~~~~~~~~~~~--~~~~~l~~~~~   75 (111)
                      ...+.+..|++++|.|......   ...+.|++.+...           .     ....+.......  .....|.|.++
T Consensus         9 ~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v   88 (126)
T d1pkoa_           9 GHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNV   88 (126)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSC
T ss_pred             CCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEE
Confidence            3346788999999999875332   2368898754311           0     011233333211  12345999999


Q ss_pred             CCCCCCeEEEEEeeeCCCceEeeEEEEEEecCC
Q psy2442          76 RHARDDAVYECVAENGVGDAVSAEASLTVYEGE  108 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~  108 (111)
                      +. .|+|.|.|.+.+..+.. ...+.|.|.+|.
T Consensus        89 ~~-~D~G~Y~C~v~~~~~~~-~~~v~L~V~~P~  119 (126)
T d1pkoa_          89 RF-SDEGGYTCFFRDHSYQE-EAAVELKVEDPF  119 (126)
T ss_dssp             CG-GGCEEEEEEEEETTEEE-EEEEEEEEECTT
T ss_pred             ch-hHCeEEEEEEEECCCEE-EEEEEEEEeCCC
Confidence            98 99999999999876653 667788887654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=9.7e-09  Score=51.17  Aligned_cols=80  Identities=13%  Similarity=0.297  Sum_probs=55.1

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc---------CC------------CCceEEEeCCCC
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS---------GT------------QSRYMVQEFPPG   66 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~---------~~------------~~~~~~~~~~~~   66 (111)
                      +|.+.+.|..+.+.+|++++|.|...+.....+.|++.  +..+.         ..            ..++........
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            46777888888999999999999987776678999872  22110         00            012222222212


Q ss_pred             CeEEEEccCCCCCCCeEEEEEeee
Q psy2442          67 GSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        67 ~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      ...|.|.+++. +|+|.|.|.+..
T Consensus        81 ~~~L~I~~~~~-~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSK-ENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCG-GGCEEEEEEEEE
T ss_pred             EeEEEEccccc-CCCEEEEeeEeC
Confidence            24599999998 999999998764

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.95  E-value=4.2e-08  Score=47.70  Aligned_cols=76  Identities=22%  Similarity=0.392  Sum_probs=52.2

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.|..+.+.+|++++|.|.........+.||+.  +..+.           ....++...... ....|.|.++.. +
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~l~~-~   81 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSA-TDFTLTISSVQA-D   81 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCG-G
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccC-CeeecEEHhhee-c
Confidence            34667778899999999999977665557999963  22111           112344333222 345599999998 9


Q ss_pred             CCeEEEEEeee
Q psy2442          80 DDAVYECVAEN   90 (111)
Q Consensus        80 d~g~y~c~~~~   90 (111)
                      |++.|.|....
T Consensus        82 DSa~YyCa~~~   92 (107)
T d1kcvl1          82 DDADYYCGQSY   92 (107)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCceEEEEecC
Confidence            99999998654

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.94  E-value=1.8e-08  Score=49.08  Aligned_cols=75  Identities=20%  Similarity=0.281  Sum_probs=52.3

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .+.|..+.+.+|++++|.|.........+.||+.  +..+.           ....++.... ......|.|.++.. +|
T Consensus         5 tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~-~~~~~~L~I~~~~~-~D   82 (107)
T d1ospl1           5 SQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSD-SGKDYTLSITSLQT-ED   82 (107)
T ss_dssp             ECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC-SSSSEEEEESSCCG-GG
T ss_pred             EeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceec-CCCeEEeEEccccc-cc
Confidence            4567778899999999999876655557999973  22111           1124555443 22445699999998 99


Q ss_pred             CeEEEEEeee
Q psy2442          81 DAVYECVAEN   90 (111)
Q Consensus        81 ~g~y~c~~~~   90 (111)
                      ++.|.|.+..
T Consensus        83 sa~YyCa~~~   92 (107)
T d1ospl1          83 VATYFCQQYW   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CCcEEEeecc
Confidence            9999998654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.93  E-value=3.9e-08  Score=47.82  Aligned_cols=75  Identities=24%  Similarity=0.320  Sum_probs=51.9

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .+.|..+.+.+|++++|.|.........+.|++.  |..+.           ....++...... ....|.|.+++. +|
T Consensus         5 tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~-~~~~L~I~~~~~-~D   82 (107)
T d1j1pl_           5 TQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG-TDFTLSINSVET-ED   82 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEESSCCG-GG
T ss_pred             ECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccC-CEEEEEEcccCc-CC
Confidence            4667778899999999999876655557999864  22111           112344443322 345599999998 99


Q ss_pred             CeEEEEEeee
Q psy2442          81 DAVYECVAEN   90 (111)
Q Consensus        81 ~g~y~c~~~~   90 (111)
                      +|.|.|...+
T Consensus        83 sa~YyCa~~~   92 (107)
T d1j1pl_          83 FGMYFCQQAN   92 (107)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEEEEcCC
Confidence            9999997654

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.93  E-value=2.5e-08  Score=48.46  Aligned_cols=76  Identities=21%  Similarity=0.355  Sum_probs=51.9

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.|..+.+.+|++++|.|.........+.||+.  |..+.           ....++...... ....|.|.++.. +
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~-~~~~L~I~~~~~-~   81 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTG-TDFVFTIENTLS-E   81 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEESSCCG-G
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCC-CeeeecccCCcc-c
Confidence            34667778899999999999876555557899863  22211           122344443222 334599999998 9


Q ss_pred             CCeEEEEEeee
Q psy2442          80 DDAVYECVAEN   90 (111)
Q Consensus        80 d~g~y~c~~~~   90 (111)
                      |++.|.|...+
T Consensus        82 Dsa~YyCa~~~   92 (106)
T d1i8ka_          82 DVGDYYCLQSF   92 (106)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCEEEeEecCc
Confidence            99999998654

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.92  E-value=3.8e-08  Score=47.87  Aligned_cols=76  Identities=18%  Similarity=0.308  Sum_probs=51.8

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.|..+.+.+|++++|.|.........+.|++.  |..+.           ....++...... ....|.|.+++. +
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~l~~-~   81 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSG-SDYSLTISSLES-E   81 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEET-TEEEEEESSCCG-G
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccC-CEEEEEEhhhcc-c
Confidence            34667777899999999999877655557999973  32211           112344333221 334599999998 9


Q ss_pred             CCeEEEEEeee
Q psy2442          80 DDAVYECVAEN   90 (111)
Q Consensus        80 d~g~y~c~~~~   90 (111)
                      |++.|.|...+
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d1c5cl1          82 DFADYYCLQYA   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             CCeEEEEecCc
Confidence            99999998654

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.88  E-value=1.7e-07  Score=45.59  Aligned_cols=77  Identities=23%  Similarity=0.349  Sum_probs=51.3

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceec----c-------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRV----S-------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~----~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.|..+.+.+|++++|.|.........+.||+.  +..+    .       ....++.... +.....|.|.++.. +
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~l~~-~   81 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG-SGTDFTLTISSLEP-E   81 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-SSSEEEEEECSCCT-T
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccC-CCCEEEeEeeeeEe-c
Confidence            34667778899999999999987655557999863  2211    0       1112333322 11334599999998 9


Q ss_pred             CCeEEEEEeeeC
Q psy2442          80 DDAVYECVAENG   91 (111)
Q Consensus        80 d~g~y~c~~~~~   91 (111)
                      |++.|.|...+.
T Consensus        82 Dsa~YyCA~~~~   93 (108)
T d1jhll_          82 DFAMYICQQHNE   93 (108)
T ss_dssp             CCSEEEEEECSS
T ss_pred             cceEEEEeeCCC
Confidence            999999986653

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.88  E-value=6.9e-08  Score=46.85  Aligned_cols=75  Identities=23%  Similarity=0.318  Sum_probs=52.0

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .+.|..+.+.+|++++|.|.........+.||+.  +..+.           ....++...... ....|.|.+++. +|
T Consensus         4 tQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~-~~~~L~I~~~~~-~D   81 (106)
T d1op3k1           4 TQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSG-TEFTLTISGLQF-DD   81 (106)
T ss_dssp             EEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEEESCCG-GG
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccC-CEEEEEEccccc-cC
Confidence            4667778899999999999876655567899874  21110           112344443322 334599999998 99


Q ss_pred             CeEEEEEeee
Q psy2442          81 DAVYECVAEN   90 (111)
Q Consensus        81 ~g~y~c~~~~   90 (111)
                      ++.|.|....
T Consensus        82 sa~YyCa~~~   91 (106)
T d1op3k1          82 FATYHCQHYA   91 (106)
T ss_dssp             CSEEEEEEEC
T ss_pred             CCcEeeeeCC
Confidence            9999998654

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=2.3e-08  Score=47.90  Aligned_cols=81  Identities=12%  Similarity=0.187  Sum_probs=53.9

Q ss_pred             eeeecCCcEEEEEEEeccC--CCeEEEEECCeeccC---C------CCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442          20 QAVKAGGITSFYCIARGDP--IPVIQWRKNGKRVSG---T------QSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~~~~~---~------~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      +....|++++|.|......  ...+.|++++..+..   .      ..+....    ....|.|.++.. .|+|.|.|.+
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~----~ngSL~I~nl~~-~DsG~Y~c~v   79 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL----ANGDLKIKNLTR-DDSGTYNVTV   79 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC----TTSCEEESSCCG-GGCEEEEEEE
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEEC----CCccEEEeCCCH-HHCEEEEEEE
Confidence            3456799999999643222  236899998776521   1      1122221    223499999998 9999999999


Q ss_pred             eeCCCce-EeeEEEEEEe
Q psy2442          89 ENGVGDA-VSAEASLTVY  105 (111)
Q Consensus        89 ~~~~~~~-~~~~~~l~~~  105 (111)
                      .+..|.. ....+.|.|.
T Consensus        80 ~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          80 YSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             EETTCCEEEEEEEEEEEE
T ss_pred             EeCCCCEEEEEEEEEEEE
Confidence            9887753 2456667665

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.87  E-value=4e-08  Score=47.79  Aligned_cols=76  Identities=22%  Similarity=0.286  Sum_probs=51.7

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.+..+.+.+|++++|.|.........+.|++.  +..+.           ....++...... ....|.|.+++. +
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~-~~~~L~I~~~~~-~   81 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSG-TDFTLTINNVQS-E   81 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEESSCCG-G
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCC-Ceeeeeechhhe-e
Confidence            34566677899999999999876554557899963  22110           112344443322 335599999998 9


Q ss_pred             CCeEEEEEeee
Q psy2442          80 DDAVYECVAEN   90 (111)
Q Consensus        80 d~g~y~c~~~~   90 (111)
                      |++.|.|....
T Consensus        82 DsA~YyCa~~~   92 (107)
T d1mexl1          82 DLAEYFCQQYN   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             cceeEEEeECC
Confidence            99999998654

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.86  E-value=9.4e-08  Score=46.45  Aligned_cols=76  Identities=22%  Similarity=0.355  Sum_probs=51.8

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceec-----------cCCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRV-----------SGTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.|..+.+.+|++++|.|.........+.|++.  +..+           .....++...... ....|.|.+++. +
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~-~   81 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSG-QDYSLTISSLEY-E   81 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEESSCCG-G
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccC-CEEEccccccCC-c
Confidence            34667777899999999999876655557889864  2211           0112345443322 335699999998 9


Q ss_pred             CCeEEEEEeee
Q psy2442          80 DDAVYECVAEN   90 (111)
Q Consensus        80 d~g~y~c~~~~   90 (111)
                      |++.|.|....
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d1d5il1          82 DMGIYYCLQYD   92 (107)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCEEEEeeecc
Confidence            99999997654

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.86  E-value=8.9e-08  Score=46.53  Aligned_cols=76  Identities=22%  Similarity=0.350  Sum_probs=52.1

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.|..+.+.+|++++|.|.........+.|++.  |..+.           ....++...... ....|.|.+++. +
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~l~~-~   81 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSG-TEFTLTISTLRP-E   81 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEESSCCG-G
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccC-CEEEEEecccee-C
Confidence            45677778899999999999987655568899873  22110           112344433222 334599999998 9


Q ss_pred             CCeEEEEEeee
Q psy2442          80 DDAVYECVAEN   90 (111)
Q Consensus        80 d~g~y~c~~~~   90 (111)
                      |++.|.|...+
T Consensus        82 DsA~YyCa~~~   92 (107)
T d1tjgl1          82 DFATYYCQQLH   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             cCceEEEEECc
Confidence            99999997654

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.83  E-value=1.3e-07  Score=45.84  Aligned_cols=76  Identities=25%  Similarity=0.375  Sum_probs=51.6

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.|..+.+.+|++++|.|.........+.|++.  |..+.           ....++...... ....|.|.++.. +
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~L~I~~~~~-~   80 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSG-RDYSFSISNLEP-E   80 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-TEEEEEECSCCG-G
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCC-CEeeeEehhhcc-c
Confidence            34667778899999999999876655557999974  11110           112344433222 334599999998 9


Q ss_pred             CCeEEEEEeee
Q psy2442          80 DDAVYECVAEN   90 (111)
Q Consensus        80 d~g~y~c~~~~   90 (111)
                      |++.|.|.+..
T Consensus        81 DsA~YyCa~~~   91 (106)
T d1a0ql1          81 DIATYYCLQYY   91 (106)
T ss_dssp             GCSEEEEEECS
T ss_pred             CCEeEEEEEeC
Confidence            99999998654

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.3e-08  Score=48.88  Aligned_cols=91  Identities=15%  Similarity=0.138  Sum_probs=54.4

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      +|.+...+.. .+..|++++|.|.... +...+.|++.+.......... ..........|.|.++.. .|.|.|.|...
T Consensus         7 kPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~-~~~~~~~~a~F~l~~vt~-~~~G~Y~C~y~   82 (99)
T d1ucta1           7 MPFISAKSSP-VIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRR-LKFWNETDPEFVIDHMDA-NKAGRYQCQYR   82 (99)
T ss_dssp             CCCEEESSCS-EEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEE-CC----CCCEEEECSCCG-GGCEEEEEEEE
T ss_pred             CCEEEecCCC-ceeCCCeEEEEEcCCC-CCcEEEEEECCCcCceecccc-ccCCCCceEEEEecCCCH-HHCceEEEEEE
Confidence            4666666654 5789999999997643 344677777543211100000 000001334588999998 99999999988


Q ss_pred             eCCCc-eEeeEEEEEE
Q psy2442          90 NGVGD-AVSAEASLTV  104 (111)
Q Consensus        90 ~~~~~-~~~~~~~l~~  104 (111)
                      +.... ..+..+.|.|
T Consensus        83 ~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          83 IGHYRFRYSDTLELVV   98 (99)
T ss_dssp             ETTTEEEECCCEEEEE
T ss_pred             CCCcccCCCCCEEEEe
Confidence            86542 2344555544

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.83  E-value=2e-07  Score=45.41  Aligned_cols=76  Identities=24%  Similarity=0.382  Sum_probs=51.8

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.|..+.+.+|++++|.|...+.....+.|++.  +..+.           ....++...... ....|.|.++.. +
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~-~~~~L~I~~l~~-~   83 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSG-TDYTFTISSLQP-E   83 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCG-G
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCC-CEeEEEEeecee-C
Confidence            34567778899999999999987655567889873  21110           112344443322 334599999998 9


Q ss_pred             CCeEEEEEeee
Q psy2442          80 DDAVYECVAEN   90 (111)
Q Consensus        80 d~g~y~c~~~~   90 (111)
                      |++.|.|....
T Consensus        84 Dsa~YyCA~~~   94 (109)
T d1bwwa_          84 DIATYYCQQYQ   94 (109)
T ss_dssp             GCEEEEEEECS
T ss_pred             cCceEEEeecC
Confidence            99999998664

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.83  E-value=1.2e-07  Score=46.47  Aligned_cols=77  Identities=22%  Similarity=0.397  Sum_probs=52.1

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceec---cCCCCceEEEeCCCC-CeEEEEccCCCCCCCeEE
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRV---SGTQSRYMVQEFPPG-GSLLRIEPVRHARDDAVY   84 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~---~~~~~~~~~~~~~~~-~~~l~~~~~~~~~d~g~y   84 (111)
                      +.+.|..+.+.+|++++|.|...+..  ...+.|++.  +...   .....++........ ...|.|.+++. +|+|.|
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~Dsa~Y   81 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRV-EDSGTY   81 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCG-GGCEEE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeeccccc-CCcceE
Confidence            45677788899999999999986543  346899863  2221   122244444332222 23589999998 999999


Q ss_pred             EEEeee
Q psy2442          85 ECVAEN   90 (111)
Q Consensus        85 ~c~~~~   90 (111)
                      .|.+..
T Consensus        82 yCa~~~   87 (113)
T d1vesa_          82 KCQAFY   87 (113)
T ss_dssp             EEEEEE
T ss_pred             eeeeec
Confidence            998754

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.82  E-value=9.3e-08  Score=47.25  Aligned_cols=77  Identities=18%  Similarity=0.384  Sum_probs=52.5

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc--------------C--CCCceEEEeCCCCCeEEEEcc
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS--------------G--TQSRYMVQEFPPGGSLLRIEP   74 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~--------------~--~~~~~~~~~~~~~~~~l~~~~   74 (111)
                      +.+.|..+.+.+|++++|.|...+.....+.|++.  +..+.              .  ...++...........|.|..
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~   83 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS   83 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence            45667777889999999999987766668999973  22110              0  113444433222234589999


Q ss_pred             CCCCCCCeEEEEEeee
Q psy2442          75 VRHARDDAVYECVAEN   90 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~   90 (111)
                      +.. +|++.|.|.+..
T Consensus        84 ~~~-~Dsa~YyCa~~~   98 (118)
T d2ij0c1          84 AHP-EDSGFYVCSALA   98 (118)
T ss_dssp             CCG-GGCEEEEEEEEC
T ss_pred             ccc-ccCceEEEEEec
Confidence            998 999999998764

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3e-08  Score=47.23  Aligned_cols=89  Identities=17%  Similarity=0.108  Sum_probs=54.9

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      +|.+...+.. .+..|.+++|.|.... ....+.|++.+..........   ........|.|.++.. .|.|.|.|...
T Consensus         4 KPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~---~~~~~~a~F~i~~v~~-~~~G~Y~C~y~   77 (95)
T d1olla1           4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKP---PERINKVKFYIPDMNS-RMAGQYSCIYR   77 (95)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSS---CTTCCEEEEEESSCCG-GGCEEEEEEEE
T ss_pred             CCEEEeeCCC-cccCCCcEEEEEecCC-CccEEEEEECCCCcceeEEcc---CCCccEEEEEEeeeec-CCCceEEEEeC
Confidence            4566555654 5779999999998643 344677888876432110000   0000234589999998 99999999987


Q ss_pred             eCCC-ceEeeEEEEEE
Q psy2442          90 NGVG-DAVSAEASLTV  104 (111)
Q Consensus        90 ~~~~-~~~~~~~~l~~  104 (111)
                      +... ...+..+.|.|
T Consensus        78 ~~~~~S~~Sd~leL~V   93 (95)
T d1olla1          78 VGELWSEPSNLLDLVV   93 (95)
T ss_dssp             ETTEECCCCCCEEEEE
T ss_pred             CCCCccCCCCCEEEEE
Confidence            6543 22244555554

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=4.1e-07  Score=44.61  Aligned_cols=78  Identities=19%  Similarity=0.355  Sum_probs=52.9

Q ss_pred             eEEcCcceeeecCCcEEEEEEEecc-CCCeEEEEEC--Ceec------------cCCCCceEEEeCCC-CCeEEEEccCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKN--GKRV------------SGTQSRYMVQEFPP-GGSLLRIEPVR   76 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~--~~~~------------~~~~~~~~~~~~~~-~~~~l~~~~~~   76 (111)
                      +.+.|..+.+.+|++++|.|..... ....+.|++.  +..+            .....++....... ....|.|.+++
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            4567777899999999999987543 3347899873  2211            01234565554321 22448999999


Q ss_pred             CCCCCeEEEEEeeeC
Q psy2442          77 HARDDAVYECVAENG   91 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~   91 (111)
                      . +|+|.|.|.+...
T Consensus        82 ~-~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          82 R-NDSGIYLCGAISL   95 (114)
T ss_dssp             G-GGCEEEEEEEECS
T ss_pred             c-CCCeEEEEEEEeC
Confidence            8 9999999987653

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.79  E-value=1.6e-07  Score=46.15  Aligned_cols=79  Identities=13%  Similarity=0.171  Sum_probs=53.0

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCC-CCCeEEEEccCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFP-PGGSLLRIEPVRHA   78 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~-~~~~~l~~~~~~~~   78 (111)
                      +.+++..+.+.+|++++|.|.........+.||+.  +..+.           ....++...... .....|.|..++. 
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-   82 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQL-   82 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCG-
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccccc-
Confidence            45667778899999999999987766778999874  22110           112334333111 1223489999998 


Q ss_pred             CCCeEEEEEeeeCC
Q psy2442          79 RDDAVYECVAENGV   92 (111)
Q Consensus        79 ~d~g~y~c~~~~~~   92 (111)
                      +|+|.|.|.+....
T Consensus        83 ~Dsg~YyCa~~~~~   96 (115)
T d1lp9e1          83 SDSALYYCALFLAS   96 (115)
T ss_dssp             GGCEEEEEEEEECS
T ss_pred             ccCccceEEEEcCC
Confidence            99999999876543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.79  E-value=1.3e-07  Score=46.44  Aligned_cols=78  Identities=21%  Similarity=0.330  Sum_probs=52.4

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCe--ecc------C-----CCCceEEEeCC-CCCeEEEEccCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK--RVS------G-----TQSRYMVQEFP-PGGSLLRIEPVRHA   78 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~~------~-----~~~~~~~~~~~-~~~~~l~~~~~~~~   78 (111)
                      +.+.|..+.+.+|+.++|.|.........+.|++...  ...      .     ...++...... .....|.|..+.. 
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~-   81 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL-   81 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCG-
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccCh-
Confidence            4566777889999999999998766666899996421  110      0     01233332211 1234488999998 


Q ss_pred             CCCeEEEEEeeeC
Q psy2442          79 RDDAVYECVAENG   91 (111)
Q Consensus        79 ~d~g~y~c~~~~~   91 (111)
                      +|+|.|.|.+...
T Consensus        82 ~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          82 SDSASYICVVSDR   94 (114)
T ss_dssp             GGCSEEEEEEECS
T ss_pred             hhCcccceeeecC
Confidence            9999999998764

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.79  E-value=4.7e-08  Score=47.97  Aligned_cols=79  Identities=25%  Similarity=0.354  Sum_probs=52.5

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc------C-----CCCceEEEeC-CCCCeEEEEccCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS------G-----TQSRYMVQEF-PPGGSLLRIEPVRHA   78 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~------~-----~~~~~~~~~~-~~~~~~l~~~~~~~~   78 (111)
                      +.+.|..+.+.+|++++|.|...+.....+.|++.  +..+.      .     ...++..... ......|.|.++.. 
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-   81 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP-   81 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCG-
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCC-
Confidence            34567778899999999999987665557899973  22110      0     0123332222 22335599999998 


Q ss_pred             CCCeEEEEEeeeCC
Q psy2442          79 RDDAVYECVAENGV   92 (111)
Q Consensus        79 ~d~g~y~c~~~~~~   92 (111)
                      +|+|.|.|.+....
T Consensus        82 ~Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          82 GDSATYLCAVRPTS   95 (113)
T ss_dssp             GGCEEEEEEEEESS
T ss_pred             CCCcEEeEeEecCC
Confidence            99999999887543

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=1.4e-08  Score=49.45  Aligned_cols=67  Identities=12%  Similarity=0.126  Sum_probs=45.8

Q ss_pred             eeecCCcEEEEEEEeccCCCeEEEEECCeecc------------------CCCCceEEEeCCCCCeEEEEccCCCCCCCe
Q psy2442          21 AVKAGGITSFYCIARGDPIPVIQWRKNGKRVS------------------GTQSRYMVQEFPPGGSLLRIEPVRHARDDA   82 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g   82 (111)
                      .+.+|+++.|.|.........+.|++......                  .-..|..+.    ....|.|.++.. +|+|
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~----~ngSL~I~~v~~-~D~G   84 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY----SNGSLLFQMITM-KDMG   84 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEEC----TTSCEEECSCCG-GGCE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEc----ccccEEEcCCCc-hhCE
Confidence            45699999999985444455889998543211                  011244433    223499999998 9999


Q ss_pred             EEEEEeeeCC
Q psy2442          83 VYECVAENGV   92 (111)
Q Consensus        83 ~y~c~~~~~~   92 (111)
                      .|.|.+.+.-
T Consensus        85 ~Y~c~v~~~~   94 (107)
T d1l6za1          85 VYTLDMTDEN   94 (107)
T ss_dssp             EEEEEEEETT
T ss_pred             EEEEEEEECC
Confidence            9999987654

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.76  E-value=1.5e-07  Score=46.24  Aligned_cols=76  Identities=20%  Similarity=0.330  Sum_probs=50.1

Q ss_pred             EEcCcceeeecCCcEEEEEEEecc-CCCeEEEEECC-----eec------c----------CCCCceEEEeCC-CCCeEE
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKNG-----KRV------S----------GTQSRYMVQEFP-PGGSLL   70 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~-----~~~------~----------~~~~~~~~~~~~-~~~~~l   70 (111)
                      .+.|..+.+.+|+++.|.|...+. ....+.|++..     ..+      .          ....++...... .....|
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            356677889999999999997763 34478998642     111      0          011233333222 223459


Q ss_pred             EEccCCCCCCCeEEEEEeee
Q psy2442          71 RIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        71 ~~~~~~~~~d~g~y~c~~~~   90 (111)
                      .|.+++. +|+|.|.|....
T Consensus        82 ~I~~~~~-~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          82 SIMNVKP-EDSDFYFCATVG  100 (115)
T ss_dssp             EECSCCG-GGCEEEEEEEEC
T ss_pred             eecccCC-CCCcEEEEeEcC
Confidence            9999998 999999998753

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.75  E-value=3.6e-07  Score=44.25  Aligned_cols=71  Identities=23%  Similarity=0.386  Sum_probs=48.3

Q ss_pred             cceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCCCeEE
Q psy2442          18 RNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y   84 (111)
                      ..+.+.+|++++|.|.........+.|++.  +..+.           ....++...... ....|.|.+++. +|++.|
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~-~~~~L~I~~~~~-~Dsa~Y   85 (106)
T d1lk3l1           8 PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSG-TDFTLTIDPVEA-DDTAIY   85 (106)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCG-GGCEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCC-CEEEeEECCcCh-hhCCCc
Confidence            357889999999999987655557999864  22110           112344443322 334599999998 999999


Q ss_pred             EEEeee
Q psy2442          85 ECVAEN   90 (111)
Q Consensus        85 ~c~~~~   90 (111)
                      .|....
T Consensus        86 yCa~~~   91 (106)
T d1lk3l1          86 FCQQSW   91 (106)
T ss_dssp             EEEECS
T ss_pred             cccccc
Confidence            997543

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.75  E-value=9e-08  Score=46.66  Aligned_cols=76  Identities=21%  Similarity=0.331  Sum_probs=51.4

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.|..+.+.+|++++|.|.........+.||+.  +..+.           ....++...... ....|.|.++.. +
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~-~~~~L~I~~~~~-~   81 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSG-TQFSLKINSLLP-E   81 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCG-G
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccC-CEEEEEEccccc-c
Confidence            34667778889999999999976555557999973  22110           112344433222 345599999998 9


Q ss_pred             CCeEEEEEeee
Q psy2442          80 DDAVYECVAEN   90 (111)
Q Consensus        80 d~g~y~c~~~~   90 (111)
                      |+|.|.|.+..
T Consensus        82 DSa~YyCA~~~   92 (109)
T d1mqkl_          82 DFGSYYCQHHY   92 (109)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCeeEEEeeeC
Confidence            99999998653

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.2e-07  Score=46.60  Aligned_cols=77  Identities=13%  Similarity=0.233  Sum_probs=51.4

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccC-CCeEEEEECCe--ec------c-----------CCCCceEEEeCCCCCeEEEE
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDP-IPVIQWRKNGK--RV------S-----------GTQSRYMVQEFPPGGSLLRI   72 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~--~~------~-----------~~~~~~~~~~~~~~~~~l~~   72 (111)
                      +.+.|..+.+..|++++|.|...... ...+.|++...  .+      .           ....++...... ....|.|
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~-~~~~L~I   81 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLG-DTFVLTL   81 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEET-TEEEEEE
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCC-CChhcEE
Confidence            45677778899999999999876543 34689987321  10      0           011244333322 3345999


Q ss_pred             ccCCCCCCCeEEEEEeeeC
Q psy2442          73 EPVRHARDDAVYECVAENG   91 (111)
Q Consensus        73 ~~~~~~~d~g~y~c~~~~~   91 (111)
                      .++.. +|+|.|.|.+...
T Consensus        82 ~~l~~-~Dsg~YyCa~~~~   99 (114)
T d1akjd_          82 SDFRR-ENEGYYFCSALSN   99 (114)
T ss_dssp             SSCCG-GGCEEEEEEEEET
T ss_pred             ccCCC-CCCEEEeEeEcCC
Confidence            99998 9999999987653

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.74  E-value=5.6e-08  Score=46.93  Aligned_cols=70  Identities=24%  Similarity=0.368  Sum_probs=47.0

Q ss_pred             ceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442          19 NQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      .+.+.+|++++|.|.........+.|++.  |..+.           ....++...... ....|.|.+++. +|++.|.
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~l~~-~Dsa~Yy   84 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSG-TTVTLTISGVQA-EDEADYY   84 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-TEEEEEETTCCG-GGCEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCC-CccCceEcCcch-hHCceEE
Confidence            57888999999999876655557899974  22110           011233332222 345589999998 9999999


Q ss_pred             EEeee
Q psy2442          86 CVAEN   90 (111)
Q Consensus        86 c~~~~   90 (111)
                      |....
T Consensus        85 CA~~~   89 (103)
T d8faba1          85 CQAWD   89 (103)
T ss_dssp             EEEEE
T ss_pred             eeecC
Confidence            98654

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.73  E-value=3.8e-07  Score=44.58  Aligned_cols=78  Identities=19%  Similarity=0.361  Sum_probs=51.3

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccC--CCeEEEEEC--Cee---ccCCCCceEEEeCCC-CCeEEEEccCCCCCCCeEE
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDP--IPVIQWRKN--GKR---VSGTQSRYMVQEFPP-GGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~---~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~d~g~y   84 (111)
                      +.+.|..+.+..|++++|.|...+..  ...+.||+.  |..   +.....++......+ ....|.|.+++. +|+|.|
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~-~Dsa~Y   80 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTV-EDGGTY   80 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCG-GGCEEE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcC-ccCEEE
Confidence            34667778888999999999875533  357899963  221   111223444332221 223589999998 999999


Q ss_pred             EEEeeeC
Q psy2442          85 ECVAENG   91 (111)
Q Consensus        85 ~c~~~~~   91 (111)
                      .|.+...
T Consensus        81 yCA~~~~   87 (112)
T d1sq2n_          81 RCGLGVA   87 (112)
T ss_dssp             EEEECBT
T ss_pred             eEEEecC
Confidence            9987643

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.72  E-value=6.4e-07  Score=43.70  Aligned_cols=77  Identities=25%  Similarity=0.397  Sum_probs=50.2

Q ss_pred             eEEcCcceeeecCCcEEEEEEEecc----CCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGD----PIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPV   75 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~----~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~   75 (111)
                      +.+.|..+.+.+|++++|.|.....    ....+.|++.  +..+.           ....++...... ....|.|.++
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~-~~~~L~I~~~   82 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSG-TDFTLNIHPV   82 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSC
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCC-Cchhcccccc
Confidence            3466777889999999999986532    1224889874  22211           112355443322 3345899999


Q ss_pred             CCCCCCeEEEEEeeeC
Q psy2442          76 RHARDDAVYECVAENG   91 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~~   91 (111)
                      +. +|++.|.|...+.
T Consensus        83 ~~-~DsA~YyCa~~~~   97 (111)
T d2gsia1          83 EE-EDAATYYCSHIRE   97 (111)
T ss_dssp             CG-GGCEEEEEEECSS
T ss_pred             cc-cCCceEEEEECCC
Confidence            98 9999999986543

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.71  E-value=6.9e-08  Score=46.93  Aligned_cols=76  Identities=22%  Similarity=0.308  Sum_probs=50.7

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.|..+.+.+|++++|.|.........+.||+.  |+.+.           ....++...... ....|.|.++.. +
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~-~~~~L~I~~~~~-~   81 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSG-TDYSLTISNLEP-E   81 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEET-TEEEEECSCCCS-C
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccC-CEEEEEEeEeee-c
Confidence            34667778899999999999876655557999964  22110           111233222211 334589999998 9


Q ss_pred             CCeEEEEEeee
Q psy2442          80 DDAVYECVAEN   90 (111)
Q Consensus        80 d~g~y~c~~~~   90 (111)
                      |++.|.|....
T Consensus        82 Dsa~YyCa~~~   92 (107)
T d3cx5k1          82 DIATYFCQHHI   92 (107)
T ss_dssp             CCSEEEEEECS
T ss_pred             CCCcEEeeeCC
Confidence            99999997643

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2e-07  Score=45.79  Aligned_cols=92  Identities=22%  Similarity=0.313  Sum_probs=55.9

Q ss_pred             cCcceeeecCCcEEEEEEEecc---CCCeEEEEECCee--c-----------cCCCCceEEEeC-CCCCeEEEEccCCCC
Q psy2442          16 RPRNQAVKAGGITSFYCIARGD---PIPVIQWRKNGKR--V-----------SGTQSRYMVQEF-PPGGSLLRIEPVRHA   78 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~---~~~~~~w~~~~~~--~-----------~~~~~~~~~~~~-~~~~~~l~~~~~~~~   78 (111)
                      .|+.+.+.+|++++|.|.....   ....+.|++....  +           .....++.+... ......|.|.++.. 
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~-   83 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ-   83 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc-
Confidence            4566788899999999986432   1235778764211  1           011233333322 11234589999998 


Q ss_pred             CCCeEEEEEeeeCCCceEeeEEEEEEecCCC
Q psy2442          79 RDDAVYECVAENGVGDAVSAEASLTVYEGEE  109 (111)
Q Consensus        79 ~d~g~y~c~~~~~~~~~~~~~~~l~~~~~~~  109 (111)
                      .|+|.|.|.+...... ....+.|.|.+...
T Consensus        84 ~DsG~Y~C~v~~~~~~-~~~~v~L~V~~~~~  113 (116)
T d1xeda_          84 DDSGRYKCGLGINSRG-LSFDVSLEVLEHHH  113 (116)
T ss_dssp             GGCEEEEEEESCGGGC-CEEEEEEEEECCCC
T ss_pred             CCCEEEEEEEEcCCCC-ceEeEEEEEECCCc
Confidence            9999999988654322 24567777776543

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.70  E-value=2.4e-07  Score=45.13  Aligned_cols=77  Identities=18%  Similarity=0.336  Sum_probs=50.0

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc--------------CCCCceEEEeCCCCCeEEEEccC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS--------------GTQSRYMVQEFPPGGSLLRIEPV   75 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~   75 (111)
                      .+.+.|..+.+.+|++++|.|.... ....+.||+.  |..+.              ....++...........|.|.++
T Consensus         3 ~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (110)
T d2aq2a1           3 AVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESA   81 (110)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSC
T ss_pred             CEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCC
Confidence            3456777788999999999998654 3457999973  22110              00122222222113344888899


Q ss_pred             CCCCCCeEEEEEeee
Q psy2442          76 RHARDDAVYECVAEN   90 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~   90 (111)
                      .. +|+|.|.|....
T Consensus        82 ~~-~Dsa~YyCa~~~   95 (110)
T d2aq2a1          82 TP-SQTSVYFCASGG   95 (110)
T ss_dssp             CG-GGCEEEEEEEEE
T ss_pred             CH-hhCEEEEEeeCC
Confidence            98 999999998764

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=8.1e-08  Score=47.51  Aligned_cols=85  Identities=15%  Similarity=0.225  Sum_probs=53.1

Q ss_pred             ceeeecCCcEEEEEEEeccCC----CeEEEEECCeec----------------c----CCCCceEEEeCC--CCCeEEEE
Q psy2442          19 NQAVKAGGITSFYCIARGDPI----PVIQWRKNGKRV----------------S----GTQSRYMVQEFP--PGGSLLRI   72 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~----~~~~w~~~~~~~----------------~----~~~~~~~~~~~~--~~~~~l~~   72 (111)
                      .+.+..|+++.|.|.....+.    ..+.|++.....                .    .-..|......+  .....|.|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            367789999999999764332    257897631110                0    001233332111  01234899


Q ss_pred             ccCCCCCCCeEEEEEeeeCCCceEeeEEEEEEe
Q psy2442          73 EPVRHARDDAVYECVAENGVGDAVSAEASLTVY  105 (111)
Q Consensus        73 ~~~~~~~d~g~y~c~~~~~~~~~~~~~~~l~~~  105 (111)
                      .+++. .|+|.|.|.+.+..+. ....+.|.|.
T Consensus        93 ~~v~~-~D~G~Y~C~v~~~~~~-~~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQL-SDIGTYQCKVKKAPGV-ANKKIHLVVL  123 (124)
T ss_dssp             CSCCG-GGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             cccEE-ccCEEEEEEEEECCCe-EEeEEEEEEE
Confidence            99998 9999999999987665 3666666654

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.70  E-value=9.5e-07  Score=43.15  Aligned_cols=75  Identities=19%  Similarity=0.381  Sum_probs=49.9

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc--------------CCCCceEEEeCCCCCeEEEEccCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS--------------GTQSRYMVQEFPPGGSLLRIEPVRH   77 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~   77 (111)
                      .+.|..+.+.+|++++|.|..... ...+.||+.  +..+.              ....++...........|.|.++..
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (113)
T d2ntsp1           3 TQTPRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLEL   81 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCG
T ss_pred             EeCCCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCc
Confidence            456777789999999999986443 357899972  22221              1123333333222334599999998


Q ss_pred             CCCCeEEEEEeee
Q psy2442          78 ARDDAVYECVAEN   90 (111)
Q Consensus        78 ~~d~g~y~c~~~~   90 (111)
                       +|++.|.|.+..
T Consensus        82 -~Dsa~YyCA~~~   93 (113)
T d2ntsp1          82 -GDSALYLCASSL   93 (113)
T ss_dssp             -GGCEEEEEEEES
T ss_pred             -ccceeeeeeeeC
Confidence             999999998764

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.69  E-value=1e-07  Score=46.84  Aligned_cols=77  Identities=18%  Similarity=0.280  Sum_probs=49.8

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc------CC------CCceEEE-eCCCCCeEEEEccCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS------GT------QSRYMVQ-EFPPGGSLLRIEPVRH   77 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~------~~------~~~~~~~-~~~~~~~~l~~~~~~~   77 (111)
                      +.+++..+.+.+|++++|.|.........+.|++.  +..+.      ..      ..+.... ........|.|.++..
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW   82 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence            34556668899999999999987665667889862  22110      00      1112222 1111224499999998


Q ss_pred             CCCCeEEEEEeee
Q psy2442          78 ARDDAVYECVAEN   90 (111)
Q Consensus        78 ~~d~g~y~c~~~~   90 (111)
                       +|+|.|.|.+..
T Consensus        83 -~Dsg~YyCa~~~   94 (115)
T d1i9ea_          83 -SDSAVYFCAVSG   94 (115)
T ss_dssp             -GGCEEEEEEEEE
T ss_pred             -cccceecccccC
Confidence             999999998654

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.69  E-value=1.9e-07  Score=45.41  Aligned_cols=75  Identities=23%  Similarity=0.335  Sum_probs=49.5

Q ss_pred             EEcCcceeeecCCcEEEEEEEecc-CCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      .+.|..+.+.+|++++|.|..... ....+.|++.  +..+.           ....++...... ....|.|.++.. +
T Consensus         5 tQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~-~~~~L~I~~~~~-~   82 (108)
T d2fx7l1           5 TQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSG-TDFTLTISRLEP-E   82 (108)
T ss_dssp             ECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-TEEEEEESSCCG-G
T ss_pred             EeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCC-CEEEEEehHhee-c
Confidence            456777889999999999986543 2336889874  22110           111234333222 334599999998 9


Q ss_pred             CCeEEEEEeee
Q psy2442          80 DDAVYECVAEN   90 (111)
Q Consensus        80 d~g~y~c~~~~   90 (111)
                      |+|.|.|...+
T Consensus        83 Dsa~YyCa~~~   93 (108)
T d2fx7l1          83 DFAVYYCQQYG   93 (108)
T ss_dssp             GCSEEEEEECS
T ss_pred             ccEEEeeecCC
Confidence            99999998754

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=7.8e-07  Score=43.31  Aligned_cols=75  Identities=16%  Similarity=0.329  Sum_probs=49.2

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCC---CeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPI---PVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVR   76 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~---~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~   76 (111)
                      +.+++ .+.+.+|++++|.|...+...   -.+.|++.  |..+.           ....++...... ....|.|.+++
T Consensus         4 ~tQ~~-slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~-~~~~L~I~~~~   81 (110)
T d1oaql_           4 VTQES-ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIG-NKAALTITGAQ   81 (110)
T ss_dssp             EEECS-EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEET-TEEEEEEESCC
T ss_pred             EeeCC-CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccc-cceeeecCCCC
Confidence            34444 578899999999999864332   24889863  22221           112455444322 44559999999


Q ss_pred             CCCCCeEEEEEeee
Q psy2442          77 HARDDAVYECVAEN   90 (111)
Q Consensus        77 ~~~d~g~y~c~~~~   90 (111)
                      . +|+|.|.|....
T Consensus        82 ~-~Dsa~YyCa~~~   94 (110)
T d1oaql_          82 T-EDEAIYFCALWY   94 (110)
T ss_dssp             G-GGCEEEEEEEEE
T ss_pred             c-cccEeEEEEccc
Confidence            8 999999998765

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.67  E-value=9.5e-07  Score=43.21  Aligned_cols=76  Identities=21%  Similarity=0.337  Sum_probs=50.1

Q ss_pred             eEEcCcceeeecCCcEEEEEEEecc-----CCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEcc
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGD-----PIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEP   74 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~-----~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~   74 (111)
                      +.+.|..+.+.+|++++|.|...+.     ....+.||+.  |..+.           ....++...... ....|.|.+
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~-~~~~L~I~~   83 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSG-TDFTLKISR   83 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECS-SEEEEEESS
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccC-CcccCccCC
Confidence            4566777889999999999997542     2246899863  22111           112344433211 334599999


Q ss_pred             CCCCCCCeEEEEEeee
Q psy2442          75 VRHARDDAVYECVAEN   90 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~   90 (111)
                      +.. +|++.|.|...+
T Consensus        84 ~~~-~DsavYyCa~~~   98 (113)
T d1n4xl_          84 VEA-EDLGIYYCFQGS   98 (113)
T ss_dssp             CCG-GGCEEEEEEECS
T ss_pred             CCc-ccCEEEEEEECC
Confidence            998 999999997654

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=5.8e-07  Score=42.72  Aligned_cols=74  Identities=15%  Similarity=0.167  Sum_probs=50.6

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEe
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVA   88 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~   88 (111)
                      -+|.+...+.. .+..|.+++|.|.......-.+.|+++|.....   ....  .. ....|.+..+.. .|.|.|.|..
T Consensus         4 PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~---~~~~--~~-~~a~F~l~~v~~-~~~G~Y~C~y   75 (96)
T d1ucta2           4 GKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLP---QHQS--GE-HPANFSLGPVDL-NVSGIYRCYG   75 (96)
T ss_dssp             CCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCC---SEEE--CS-SSEEEECCSCCG-GGCEEEEEEE
T ss_pred             CCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccce---EEcC--CC-cccEEEEecccc-ccCcEEEEEE
Confidence            35666666654 688999999999854333346778998764322   1111  11 345588999998 9999999987


Q ss_pred             ee
Q psy2442          89 EN   90 (111)
Q Consensus        89 ~~   90 (111)
                      ..
T Consensus        76 ~~   77 (96)
T d1ucta2          76 WY   77 (96)
T ss_dssp             EC
T ss_pred             Ec
Confidence            64

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.63  E-value=1.4e-06  Score=42.52  Aligned_cols=75  Identities=23%  Similarity=0.346  Sum_probs=48.2

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccC-----CCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDP-----IPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPV   75 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~-----~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~   75 (111)
                      .+.|..+.+.+|++++|.|......     ...+.|++.  |..+.           ....++...... ....|.|.++
T Consensus         5 TQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~-~~~~L~I~~~   83 (112)
T d1ncwl1           5 TQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSG-TDFTLKISRV   83 (112)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSC
T ss_pred             eCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCC-CEEEEEECcc
Confidence            4667778899999999999864322     235889863  22210           112344332211 2345999999


Q ss_pred             CCCCCCeEEEEEeee
Q psy2442          76 RHARDDAVYECVAEN   90 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~   90 (111)
                      +. +|++.|.|...+
T Consensus        84 ~~-eDsAvYYC~~~~   97 (112)
T d1ncwl1          84 EA-EDLGVYYCWQGT   97 (112)
T ss_dssp             CG-GGCEEEEEEECS
T ss_pred             cc-CcCEeEEEEcCC
Confidence            98 999999997644

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=3.6e-07  Score=43.79  Aligned_cols=84  Identities=17%  Similarity=0.220  Sum_probs=48.3

Q ss_pred             ecCCCeeEEcCcceeeecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEE
Q psy2442           7 FLDPPEITLRPRNQAVKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus         7 v~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y   84 (111)
                      |..+|.+..-+.. ....|+..+|.|.+.|..+.  .+.|.++|..+............++.........+.. .+.+.|
T Consensus         2 v~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~-~~~~~y   79 (100)
T d1k5nb_           2 IQRTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTP-TEKDEY   79 (100)
T ss_dssp             CCBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECC-CSSCCE
T ss_pred             ccCCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECC-CCCCEE
Confidence            3455665443222 34578899999999997555  6799999988753211111111111111222233444 566689


Q ss_pred             EEEeeeCC
Q psy2442          85 ECVAENGV   92 (111)
Q Consensus        85 ~c~~~~~~   92 (111)
                      .|.+....
T Consensus        80 tC~V~H~s   87 (100)
T d1k5nb_          80 ACRVNHVT   87 (100)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99998754

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=6.2e-07  Score=42.85  Aligned_cols=83  Identities=19%  Similarity=0.237  Sum_probs=47.3

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      +.+|.+...+.. ....|+.++|.|.+.+..+.  .+.|.++|...............++.........+.. .+.+.|.
T Consensus         2 ~~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~-~~~~~yt   79 (99)
T d1lk2b_           2 QKTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTP-TETDTYA   79 (99)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECC-CSSCCEE
T ss_pred             CCCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecC-cCCCEEE
Confidence            345555432222 34568889999999986554  6899999998754311111112121112222233444 5566899


Q ss_pred             EEeeeCC
Q psy2442          86 CVAENGV   92 (111)
Q Consensus        86 c~~~~~~   92 (111)
                      |.+....
T Consensus        80 C~V~H~s   86 (99)
T d1lk2b_          80 CRVKHDS   86 (99)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9987753

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.62  E-value=1.3e-07  Score=46.42  Aligned_cols=78  Identities=14%  Similarity=0.221  Sum_probs=51.4

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceec------cCC------CCceEEEeC-CCCCeEEEEccCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRV------SGT------QSRYMVQEF-PPGGSLLRIEPVRH   77 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~------~~~------~~~~~~~~~-~~~~~~l~~~~~~~   77 (111)
                      +.+.+..+.+.+|++++|.|.........+.|++.  +..+      ...      ..++..... ......|.|.++..
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM   82 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence            44567778899999999999987666668999973  2211      000      112222211 11223499999998


Q ss_pred             CCCCeEEEEEeeeC
Q psy2442          78 ARDDAVYECVAENG   91 (111)
Q Consensus        78 ~~d~g~y~c~~~~~   91 (111)
                       +|+|.|.|.+...
T Consensus        83 -~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          83 -SDAAEYFCAVSES   95 (115)
T ss_dssp             -GGCEEEEEEEESS
T ss_pred             -cCCccceeeecCC
Confidence             9999999988653

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.61  E-value=1.1e-06  Score=42.79  Aligned_cols=76  Identities=26%  Similarity=0.418  Sum_probs=49.3

Q ss_pred             EEcCcceeeecCCcEEEEEEEecc----CCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGD----PIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVR   76 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~----~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~   76 (111)
                      .+.|..+.+.+|++++|.|.....    ....+.|++.  |..+.           ....++.... +.....|.|.++.
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~   83 (111)
T d1j05a_           5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG-SRTDFTLIIDPVE   83 (111)
T ss_dssp             EEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEC-SSSEEEEEESSCC
T ss_pred             EccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEec-CCCEEEEEEcccc
Confidence            456777788999999999986432    2224889873  32221           1123443332 2234559999999


Q ss_pred             CCCCCeEEEEEeeeC
Q psy2442          77 HARDDAVYECVAENG   91 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~   91 (111)
                      . +|++.|.|...+.
T Consensus        84 ~-~Dsa~YyCa~~~~   97 (111)
T d1j05a_          84 A-DDVATYYCQQTNE   97 (111)
T ss_dssp             G-GGCEEEEEEECSS
T ss_pred             c-ccCccEEEeecCC
Confidence            8 9999999986643

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.61  E-value=2.9e-07  Score=45.25  Aligned_cols=79  Identities=25%  Similarity=0.335  Sum_probs=51.4

Q ss_pred             eEEcCcceeeecCCcEEEEEEEecc-CCCeEEEEEC--Ceecc--------------CCCCceEEEeCCCCC-eEEEEcc
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKN--GKRVS--------------GTQSRYMVQEFPPGG-SLLRIEP   74 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~--~~~~~--------------~~~~~~~~~~~~~~~-~~l~~~~   74 (111)
                      +.+.+..+.+.+|++++|.|..... ....+.|++.  +..+.              ....|+......... ..|.|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            3456677889999999999987543 4557899862  22110              012355443222122 3488999


Q ss_pred             CCCCCCCeEEEEEeeeCC
Q psy2442          75 VRHARDDAVYECVAENGV   92 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~~   92 (111)
                      ++. +|+|.|.|......
T Consensus        83 ~~~-~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          83 VRT-EDSATYYCAFTLPP   99 (116)
T ss_dssp             CCG-GGCEEEEEEEECTT
T ss_pred             ccc-cccccceeeEecCC
Confidence            998 99999999876543

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.60  E-value=1.5e-06  Score=42.53  Aligned_cols=71  Identities=18%  Similarity=0.305  Sum_probs=47.6

Q ss_pred             ceeeecCCcEEEEEEEeccC--CCeEEEEECCe--ecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCCCeE
Q psy2442          19 NQAVKAGGITSFYCIARGDP--IPVIQWRKNGK--RVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAV   83 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~   83 (111)
                      .+.+.+|++++|.|...+..  ...+.|++...  .+.           ....++...... ....|.|.+++. +|++.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~v~~-~DsA~   86 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSG-TSASLAISGLES-EDEAD   86 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEET-TEEEEEESSCCG-GGCEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCC-CeeeeEecccCc-ccCce
Confidence            47888999999999976543  34789997421  110           111244433222 345599999998 99999


Q ss_pred             EEEEeeeC
Q psy2442          84 YECVAENG   91 (111)
Q Consensus        84 y~c~~~~~   91 (111)
                      |.|.....
T Consensus        87 YyCA~~~~   94 (114)
T d2rhea_          87 YYCAAWND   94 (114)
T ss_dssp             EEEEEEET
T ss_pred             EEEeecCC
Confidence            99987653

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.60  E-value=1.7e-06  Score=42.21  Aligned_cols=75  Identities=23%  Similarity=0.306  Sum_probs=48.4

Q ss_pred             EEcCcceeeecCCcEEEEEEEecc-----CCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGD-----PIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPV   75 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~-----~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~   75 (111)
                      .+.+..+.+.+|++++|.|...+.     ....+.|++.  |..+.           ....++...... ....|.|.++
T Consensus         5 TQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~-~~~~L~Is~~   83 (112)
T d1mjul1           5 TQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSG-TAFTLRISRV   83 (112)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECS-SEEEEEESSC
T ss_pred             EecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCC-CEEEEEECCc
Confidence            455666788899999999986542     2336889863  22211           112344443322 3345899999


Q ss_pred             CCCCCCeEEEEEeee
Q psy2442          76 RHARDDAVYECVAEN   90 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~   90 (111)
                      .. +|++.|.|....
T Consensus        84 ~~-~DsAvYyCa~~~   97 (112)
T d1mjul1          84 EA-EDVGVYYCLQHL   97 (112)
T ss_dssp             CG-GGCEEEEEEECS
T ss_pred             cc-cCCceEEEEeCC
Confidence            98 999999997543

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.59  E-value=2.2e-07  Score=45.20  Aligned_cols=76  Identities=18%  Similarity=0.308  Sum_probs=48.7

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc------CC-----CCceEEEeCC-CCCeEEEEccCCCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS------GT-----QSRYMVQEFP-PGGSLLRIEPVRHAR   79 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~------~~-----~~~~~~~~~~-~~~~~l~~~~~~~~~   79 (111)
                      .+.|..+.+.+|++++|.|.........+.||+.  +..+.      ..     ..++...... .....|.|.++.. +
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~   81 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQP-G   81 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCT-T
T ss_pred             EecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCC-C
Confidence            3556667889999999999876554457899974  22111      00     1122222111 1223489999998 9


Q ss_pred             CCeEEEEEeee
Q psy2442          80 DDAVYECVAEN   90 (111)
Q Consensus        80 d~g~y~c~~~~   90 (111)
                      |+|.|.|.+..
T Consensus        82 Dsa~YyCa~~~   92 (110)
T d1u3ha1          82 DSATYFCAASA   92 (110)
T ss_dssp             SCSEEEECCEE
T ss_pred             CceeEeeeecC
Confidence            99999998764

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.59  E-value=6.6e-07  Score=43.67  Aligned_cols=75  Identities=21%  Similarity=0.358  Sum_probs=49.7

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc---------------CCCCceEEEeCCCCCeEEEEccCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS---------------GTQSRYMVQEFPPGGSLLRIEPVR   76 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~---------------~~~~~~~~~~~~~~~~~l~~~~~~   76 (111)
                      .+.|..+.+.+|++++|.|.... ....+.|++.  +..+.               ....++...........|.|.++.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (112)
T d1kgce1           3 SQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQ   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCC
T ss_pred             EECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCC
Confidence            45677778899999999998543 3457899873  22110               112344433333233558899999


Q ss_pred             CCCCCeEEEEEeee
Q psy2442          77 HARDDAVYECVAEN   90 (111)
Q Consensus        77 ~~~d~g~y~c~~~~   90 (111)
                      . +|++.|.|.+..
T Consensus        82 ~-~Dsa~YyCa~~~   94 (112)
T d1kgce1          82 Q-EDSAVYLCASSL   94 (112)
T ss_dssp             G-GGCEEEEEEEES
T ss_pred             c-CCCEEEEEeeeC
Confidence            8 999999998754

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.4e-07  Score=44.94  Aligned_cols=70  Identities=19%  Similarity=0.284  Sum_probs=45.4

Q ss_pred             eeeecCCcEEEEEEEeccCCCeEEEEECCeec--c---------C--CCCceEEEeC--CCCCeEEEEccCCCCCCCeEE
Q psy2442          20 QAVKAGGITSFYCIARGDPIPVIQWRKNGKRV--S---------G--TQSRYMVQEF--PPGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~--~---------~--~~~~~~~~~~--~~~~~~l~~~~~~~~~d~g~y   84 (111)
                      +....|++++|.|.........+.|++.....  .         .  ...++.....  ......|.|.+++. +|+|.|
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~-~DsG~Y   82 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKI-EDSDTY   82 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCG-GGCEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCCh-HHCEEE
Confidence            45678999999998777666689998753321  0         0  0112211100  10123499999998 999999


Q ss_pred             EEEeee
Q psy2442          85 ECVAEN   90 (111)
Q Consensus        85 ~c~~~~   90 (111)
                      .|.+.+
T Consensus        83 ~C~v~~   88 (97)
T d2nxyb1          83 ICEVED   88 (97)
T ss_dssp             EEEETT
T ss_pred             EEEEec
Confidence            999865

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.57  E-value=6e-07  Score=43.75  Aligned_cols=77  Identities=22%  Similarity=0.333  Sum_probs=51.1

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc------C-----CCCceEEEe-CCCCCeEEEEccCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS------G-----TQSRYMVQE-FPPGGSLLRIEPVRHA   78 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~------~-----~~~~~~~~~-~~~~~~~l~~~~~~~~   78 (111)
                      +.+.+..+.+.+|++++|.|.........+.|++.  |..+.      .     ...++.... .......|.|..+.. 
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-   81 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQP-   81 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG-
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcc-
Confidence            34566667889999999999877665667889873  22211      0     012333322 222345589999998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|+|.|.|....
T Consensus        82 ~Dsa~YyCa~~~   93 (111)
T d1bd2d1          82 GDSAVYFCAAME   93 (111)
T ss_dssp             GGCEEEEEEEES
T ss_pred             cccEEEEeeccC
Confidence            999999998764

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.56  E-value=5e-07  Score=44.22  Aligned_cols=79  Identities=16%  Similarity=0.202  Sum_probs=49.3

Q ss_pred             eEEcCcceeeecCCcEEEEEEEecc-CCCeEEEEEC--Ceecc------CC------CCceEEE-eCCCCCeEEEEccCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGD-PIPVIQWRKN--GKRVS------GT------QSRYMVQ-EFPPGGSLLRIEPVR   76 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~--~~~~~------~~------~~~~~~~-~~~~~~~~l~~~~~~   76 (111)
                      +.+.+..+.+.+|++++|.|..... ....+.|++.  +..+.      ..      ..++... ........|.|.++.
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   82 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence            3455667789999999999986543 3346889873  22211      00      1122222 112123458999999


Q ss_pred             CCCCCeEEEEEeeeCC
Q psy2442          77 HARDDAVYECVAENGV   92 (111)
Q Consensus        77 ~~~d~g~y~c~~~~~~   92 (111)
                      . +|+|.|.|.+....
T Consensus        83 ~-~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          83 V-VDSAVYFCALSGFY   97 (114)
T ss_dssp             G-GGCEEEEEEEECSB
T ss_pred             c-ccCCCceEeCCCCC
Confidence            8 99999999866543

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.56  E-value=6.3e-07  Score=43.68  Aligned_cols=75  Identities=20%  Similarity=0.421  Sum_probs=49.3

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc---------------CCCCceEEEeCCCCCeEEEEccCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS---------------GTQSRYMVQEFPPGGSLLRIEPVR   76 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~---------------~~~~~~~~~~~~~~~~~l~~~~~~   76 (111)
                      .+.|..+.+.+|++++|.|.... ....+.||+.  |..+.               ....++...........|.|.++.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~   81 (111)
T d2esve1           3 TQFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAE   81 (111)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCC
T ss_pred             EECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcc
Confidence            45677778999999999998544 3447899863  22110               012344433322233459999999


Q ss_pred             CCCCCeEEEEEeee
Q psy2442          77 HARDDAVYECVAEN   90 (111)
Q Consensus        77 ~~~d~g~y~c~~~~   90 (111)
                      . +|++.|.|.+..
T Consensus        82 ~-~Dsa~YyCa~~~   94 (111)
T d2esve1          82 L-EDSGVYFCASSQ   94 (111)
T ss_dssp             G-GGCEEEEEEEES
T ss_pred             c-CCCceEEEeeeC
Confidence            8 999999997653

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=3.7e-07  Score=45.10  Aligned_cols=74  Identities=20%  Similarity=0.311  Sum_probs=48.9

Q ss_pred             EcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      +.|..+.+.+|++++|.|.........+.|++.  +..+.           ....++...... ....|.|.+++. .|+
T Consensus         6 Q~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~-~~~~L~I~~~~~-~Ds   83 (119)
T d1f3rb2           6 QSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSG-TDYTLTISSLQP-EDV   83 (119)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEB-TEEEEEECSCCG-GGC
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCC-CEEEEEcccCcc-CCC
Confidence            556667889999999999876554457899974  11110           112233322211 334599999998 999


Q ss_pred             eEEEEEeee
Q psy2442          82 AVYECVAEN   90 (111)
Q Consensus        82 g~y~c~~~~   90 (111)
                      +.|.|....
T Consensus        84 avYyCa~~~   92 (119)
T d1f3rb2          84 ATYFCYQYN   92 (119)
T ss_dssp             SEEEEEEES
T ss_pred             eEEEeeccC
Confidence            999998654

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.53  E-value=9.1e-07  Score=43.29  Aligned_cols=76  Identities=17%  Similarity=0.268  Sum_probs=48.9

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc------C--------CCCceEEEeCCCCCeEEEEccCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS------G--------TQSRYMVQEFPPGGSLLRIEPVRH   77 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~------~--------~~~~~~~~~~~~~~~~l~~~~~~~   77 (111)
                      .+.|..+.+.+|++++|.|... .....+.||+.  +..+.      .        ...++...........|.|.++..
T Consensus         3 tQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (114)
T d1ogae1           3 TQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK   81 (114)
T ss_dssp             ECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS
T ss_pred             EEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCc
Confidence            4566778899999999999865 34458999963  21110      0        011222222221233499999998


Q ss_pred             CCCCeEEEEEeeeC
Q psy2442          78 ARDDAVYECVAENG   91 (111)
Q Consensus        78 ~~d~g~y~c~~~~~   91 (111)
                       +|++.|.|.....
T Consensus        82 -~DSa~YyCa~~~~   94 (114)
T d1ogae1          82 -NPTAFYLCASSSR   94 (114)
T ss_dssp             -CCCEEEEEEEESS
T ss_pred             -CCceeEEEeeccC
Confidence             9999999987643

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.52  E-value=1.2e-06  Score=42.67  Aligned_cols=74  Identities=19%  Similarity=0.364  Sum_probs=48.8

Q ss_pred             CcceeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceecc-----------CCCCceEEEeCC-CCCeEEEEccCCCCCC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRVS-----------GTQSRYMVQEFP-PGGSLLRIEPVRHARD   80 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~-~~~~~l~~~~~~~~~d   80 (111)
                      |..+.+.+|++++|.|...+..  ...+.|++.  +..+.           ....++...... .....|.|.++.. +|
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~-~D   85 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKT-ED   85 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCG-GG
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCc-cc
Confidence            4567899999999999876533  235889874  22110           112345444322 2344589999998 99


Q ss_pred             CeEEEEEeeeC
Q psy2442          81 DAVYECVAENG   91 (111)
Q Consensus        81 ~g~y~c~~~~~   91 (111)
                      ++.|.|...+.
T Consensus        86 sa~YyCA~~~~   96 (111)
T d1cd0a_          86 EADYYCQSYDA   96 (111)
T ss_dssp             CEEEEEEEEET
T ss_pred             CcEEEEeeccC
Confidence            99999986653

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.52  E-value=1.5e-06  Score=42.57  Aligned_cols=78  Identities=19%  Similarity=0.336  Sum_probs=50.2

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc------CC-----CCceEEEeCC-CCCeEEEEccCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS------GT-----QSRYMVQEFP-PGGSLLRIEPVRHA   78 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~------~~-----~~~~~~~~~~-~~~~~l~~~~~~~~   78 (111)
                      +.+.|..+.+.+|++++|.|...+. ...+.||+.  |..+.      ..     ..++...... .....|.|.++.. 
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-   80 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQP-   80 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCG-
T ss_pred             eEeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCc-
Confidence            3466777889999999999987553 347899973  22110      00     1222222221 2334589999998 


Q ss_pred             CCCeEEEEEeeeCC
Q psy2442          79 RDDAVYECVAENGV   92 (111)
Q Consensus        79 ~d~g~y~c~~~~~~   92 (111)
                      +|+|.|.|......
T Consensus        81 ~Dsa~YyCa~~~~~   94 (115)
T d1ogad1          81 GDTGLYLCAGAGSQ   94 (115)
T ss_dssp             GGCEEEEEEEECTT
T ss_pred             cceeeEcccccCCC
Confidence            99999999876543

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.52  E-value=6.9e-07  Score=43.05  Aligned_cols=74  Identities=19%  Similarity=0.298  Sum_probs=48.7

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--eecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      .+.|..+.+.+|++++|.|..... ...+.|++..  ..+.           ....++...... ....|.|.+++. +|
T Consensus         4 tQsP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~L~I~~~~~-~D   80 (104)
T d1yqvl1           4 TQSPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSG-TSYSLTISSMET-ED   80 (104)
T ss_dssp             EEESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCG-GG
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCC-CEEEEEecccCc-cc
Confidence            466777889999999999986443 3367898742  1110           112333333222 334599999998 99


Q ss_pred             CeEEEEEeee
Q psy2442          81 DAVYECVAEN   90 (111)
Q Consensus        81 ~g~y~c~~~~   90 (111)
                      ++.|.|....
T Consensus        81 sa~YyCa~~~   90 (104)
T d1yqvl1          81 AATYYCQQWG   90 (104)
T ss_dssp             CEEEEEEECS
T ss_pred             CCeEEEEecC
Confidence            9999997643

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.52  E-value=5.4e-07  Score=44.07  Aligned_cols=78  Identities=18%  Similarity=0.301  Sum_probs=48.9

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc------CC---CCce--EEEeCCCCCeEEEEccCCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS------GT---QSRY--MVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~------~~---~~~~--~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+.+..+.+.+|++++|.|.... ....+.||+.  +..+.      ..   ....  ...........|.|.++.. +
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~   81 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQL-E   81 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCG-G
T ss_pred             eEECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCH-h
Confidence            346677788999999999998764 3447899873  22110      00   0011  1111111223488999998 9


Q ss_pred             CCeEEEEEeeeCC
Q psy2442          80 DDAVYECVAENGV   92 (111)
Q Consensus        80 d~g~y~c~~~~~~   92 (111)
                      |+|.|.|.+....
T Consensus        82 Dsa~YyCa~~~~~   94 (113)
T d1h5ba_          82 DSGTYFCAAEASS   94 (113)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             HCEEEEEEecCCC
Confidence            9999999876543

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.50  E-value=7.9e-07  Score=43.35  Aligned_cols=71  Identities=17%  Similarity=0.296  Sum_probs=47.3

Q ss_pred             ceeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCCCeE
Q psy2442          19 NQAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAV   83 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~   83 (111)
                      .+.+.+|++++|.|...+..  ...+.|++.  +..+.           ....++...... ....|.|.+++. +|++.
T Consensus         9 s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~~~~-~Dsa~   86 (111)
T d1rzfl1           9 SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSG-TSATLGITGLQT-GDEAD   86 (111)
T ss_dssp             EEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET-TEEEEEESSCCG-GGCSE
T ss_pred             ceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCC-CEeeeEEeeecc-ccCcc
Confidence            57889999999999875432  346999863  11110           112344433322 345599999998 99999


Q ss_pred             EEEEeeeC
Q psy2442          84 YECVAENG   91 (111)
Q Consensus        84 y~c~~~~~   91 (111)
                      |.|.....
T Consensus        87 YyCA~~~~   94 (111)
T d1rzfl1          87 YYCGTWDS   94 (111)
T ss_dssp             EEEEEEET
T ss_pred             eEEeecCC
Confidence            99987654

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=1.6e-06  Score=42.45  Aligned_cols=91  Identities=15%  Similarity=0.207  Sum_probs=52.8

Q ss_pred             EEcCcceeeecCCcEEEEEEEecc----CCCeEEEEECC--ee----c---------cC----CCCceEEEeCC-CCCeE
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGD----PIPVIQWRKNG--KR----V---------SG----TQSRYMVQEFP-PGGSL   69 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~----~~~~~~w~~~~--~~----~---------~~----~~~~~~~~~~~-~~~~~   69 (111)
                      ...+..+.+..|++++|.|.....    ....+.|++..  ..    +         ..    -..|+.+.... .....
T Consensus         3 v~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   82 (119)
T d1neua_           3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGS   82 (119)
T ss_dssp             EECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCC
T ss_pred             EcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEE
Confidence            345666788899999999986432    22378897521  10    0         00    01233332111 12234


Q ss_pred             EEEccCCCCCCCeEEEEEeeeCCC-ceEeeEEEEEEe
Q psy2442          70 LRIEPVRHARDDAVYECVAENGVG-DAVSAEASLTVY  105 (111)
Q Consensus        70 l~~~~~~~~~d~g~y~c~~~~~~~-~~~~~~~~l~~~  105 (111)
                      |.|.++.. .|+|.|.|.+.+..+ ......+.|.|.
T Consensus        83 L~I~~v~~-~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          83 IVIHNLDY-SDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             EEECSCCG-GGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEECCCCh-HHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            99999998 999999999987542 112445566553

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.49  E-value=2.5e-06  Score=41.63  Aligned_cols=76  Identities=16%  Similarity=0.271  Sum_probs=49.3

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc--------------CCCCceEEEeCCCCCeEEEEccCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS--------------GTQSRYMVQEFPPGGSLLRIEPVR   76 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~   76 (111)
                      +.+.|..+.+.+|++++|.|.... ....+.||+.  |..+.              ....++.....+.....|.|.++.
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   81 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAS   81 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCc
Confidence            356677788899999999998533 3457889873  22110              001223333222233458899999


Q ss_pred             CCCCCeEEEEEeee
Q psy2442          77 HARDDAVYECVAEN   90 (111)
Q Consensus        77 ~~~d~g~y~c~~~~   90 (111)
                      . +|+|.|.|.+..
T Consensus        82 ~-~Dsa~YyCa~~~   94 (113)
T d1j8he1          82 T-NQTSMYLCASSS   94 (113)
T ss_dssp             G-GGCEEEEEEEEC
T ss_pred             c-CCcccEEeeEcc
Confidence            8 999999998764

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2e-06  Score=40.53  Aligned_cols=73  Identities=19%  Similarity=0.359  Sum_probs=48.7

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      +-+|.+...+.. .+..|.+++|.|.... ..-.+.++++|....     ...... .....|.|.++.. .|.|.|.|.
T Consensus         2 ypkPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~-----~~~~~~-~~~a~F~i~~v~~-~~~G~Y~C~   72 (93)
T d1olla2           2 YDTPTLSVHPGP-EVISGEKVTFYCRLDT-ATSMFLLLKEGRSSH-----VQRGYG-KVQAEFPLGPVTT-AHRGTYRCF   72 (93)
T ss_dssp             SCCCEEEEESCS-EEETTCEEEEEEECSS-SCSEEEEEEESSSCE-----EEEEEC-SSEEEEEEEECCG-GGCEEEEEE
T ss_pred             CCCCEEEEeCCC-cccCCCcEEEEECCCC-CCCEEEEEECCCccc-----eeecCC-CceeEEEecccCh-hcCceEEEE
Confidence            346677666654 6789999999998643 334677888655321     111111 1334589999998 999999997


Q ss_pred             ee
Q psy2442          88 AE   89 (111)
Q Consensus        88 ~~   89 (111)
                      ..
T Consensus        73 ~~   74 (93)
T d1olla2          73 GS   74 (93)
T ss_dssp             CE
T ss_pred             eE
Confidence            43

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.48  E-value=7.4e-07  Score=43.37  Aligned_cols=78  Identities=18%  Similarity=0.294  Sum_probs=51.3

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc------C-----CCCceEEEeCC-CCCeEEEEccCCCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS------G-----TQSRYMVQEFP-PGGSLLRIEPVRHA   78 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~------~-----~~~~~~~~~~~-~~~~~l~~~~~~~~   78 (111)
                      +.+.+..+.+.+|++++|.|.........+.|++.  |..+.      .     ...++...... .....|.+.++.. 
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~-   81 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQE-   81 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECG-
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCc-
Confidence            45677778899999999999876655557999973  22111      0     01233333221 1234488888988 


Q ss_pred             CCCeEEEEEeeeC
Q psy2442          79 RDDAVYECVAENG   91 (111)
Q Consensus        79 ~d~g~y~c~~~~~   91 (111)
                      +|++.|.|.....
T Consensus        82 ~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          82 SDSAVYYCALSGG   94 (110)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CCCcccceeecCC
Confidence            9999999987653

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.48  E-value=4.7e-06  Score=41.29  Aligned_cols=77  Identities=18%  Similarity=0.353  Sum_probs=50.8

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceecc----------------CCCCceEEEeCC-CCCeEEE
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRVS----------------GTQSRYMVQEFP-PGGSLLR   71 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~~----------------~~~~~~~~~~~~-~~~~~l~   71 (111)
                      +.+++..+.+.+|++++|.|...+..  ...+.|++.  ++.+.                ....++...... .....|.
T Consensus         4 l~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~   83 (123)
T d1hxmb1           4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT   83 (123)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred             eECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeec
Confidence            44555567788999999999987643  346889873  21110                012355554322 1234589


Q ss_pred             EccCCCCCCCeEEEEEeee
Q psy2442          72 IEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        72 ~~~~~~~~d~g~y~c~~~~   90 (111)
                      |.++.. +|++.|.|....
T Consensus        84 i~~l~~-~Dsa~YyCA~~~  101 (123)
T d1hxmb1          84 IHNVEK-QDIATYYCALWE  101 (123)
T ss_dssp             ECSCCG-GGCEEEEEEEEE
T ss_pred             cccccc-ccCcEEEEeeeC
Confidence            999998 999999998654

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.47  E-value=5.4e-07  Score=44.08  Aligned_cols=77  Identities=22%  Similarity=0.383  Sum_probs=50.1

Q ss_pred             eeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCe--ecc--------------CCCCceEEEeCCCCCeEEEEccC
Q psy2442          12 EITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGK--RVS--------------GTQSRYMVQEFPPGGSLLRIEPV   75 (111)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~~--------------~~~~~~~~~~~~~~~~~l~~~~~   75 (111)
                      .+.+.|..+.+.+|++++|.|..... ...+.||+...  .+.              ....++...........|.|.++
T Consensus         3 ~VtQ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (113)
T d1nfdb1           3 GVVQSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL   81 (113)
T ss_dssp             SCEEECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSC
T ss_pred             CEEEcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEeccc
Confidence            34567777889999999999986443 34789997422  110              01123333222223345888999


Q ss_pred             CCCCCCeEEEEEeee
Q psy2442          76 RHARDDAVYECVAEN   90 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~   90 (111)
                      +. +|++.|.|.+..
T Consensus        82 ~~-~Dsa~YyCa~~~   95 (113)
T d1nfdb1          82 EL-EDSAMYFCASSL   95 (113)
T ss_dssp             CG-GGCEEECEEEES
T ss_pred             Cc-CCceeEEEEeec
Confidence            98 999999998654

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.47  E-value=5.2e-06  Score=40.38  Aligned_cols=76  Identities=20%  Similarity=0.347  Sum_probs=48.5

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc--------------CCCCceEEEeCCCCCeEEEEccCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS--------------GTQSRYMVQEFPPGGSLLRIEPVR   76 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~   76 (111)
                      +.+.|..+.+.+|++++|.|.... ....+.||+.  +..+.              ....++...........|.|..+.
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (112)
T d2bnub1           2 VTQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAA   80 (112)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCC
T ss_pred             eEECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCC
Confidence            346677778899999999998654 3457999863  22211              001222222111122349999999


Q ss_pred             CCCCCeEEEEEeee
Q psy2442          77 HARDDAVYECVAEN   90 (111)
Q Consensus        77 ~~~d~g~y~c~~~~   90 (111)
                      . +|++.|.|....
T Consensus        81 ~-~DsavYyCA~~~   93 (112)
T d2bnub1          81 P-SQTSVYFCASSY   93 (112)
T ss_dssp             G-GGCEEEEEEEEC
T ss_pred             H-HHCEEEEEeecC
Confidence            8 999999997653

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.46  E-value=9.8e-07  Score=43.21  Aligned_cols=77  Identities=19%  Similarity=0.283  Sum_probs=49.5

Q ss_pred             EEcCcceeeecCCcEEEEEEEec-cCCCeEEEEEC--Ceecc--------CC----CCceEEEeC-CCCCeEEEEccCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARG-DPIPVIQWRKN--GKRVS--------GT----QSRYMVQEF-PPGGSLLRIEPVRH   77 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~--~~~~~--------~~----~~~~~~~~~-~~~~~~l~~~~~~~   77 (111)
                      .+.+..+.+.+|++++|.|.... .....+.||+.  +..+.        ..    ..++..... ......|.|.+++.
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   82 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc
Confidence            45666788999999999998654 33346899973  21110        00    123333321 11234499999998


Q ss_pred             CCCCeEEEEEeeeC
Q psy2442          78 ARDDAVYECVAENG   91 (111)
Q Consensus        78 ~~d~g~y~c~~~~~   91 (111)
                       +|+|.|.|.+...
T Consensus        83 -~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          83 -EDSAVYFCAMRGD   95 (115)
T ss_dssp             -GGCEEEEEEEECC
T ss_pred             -cccccccceeecC
Confidence             9999999987654

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.45  E-value=1.2e-06  Score=42.59  Aligned_cols=72  Identities=17%  Similarity=0.208  Sum_probs=45.2

Q ss_pred             cceeeecCCcEEEEEEEeccC-CCeEEEEEC--Ceecc------C---CCCceEEE-eCCCCCeEEEEccCCCCCCCeEE
Q psy2442          18 RNQAVKAGGITSFYCIARGDP-IPVIQWRKN--GKRVS------G---TQSRYMVQ-EFPPGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~--~~~~~------~---~~~~~~~~-~~~~~~~~l~~~~~~~~~d~g~y   84 (111)
                      ..+.+.+|++++|.|...... ...+.||+.  +..+.      .   ...+.... ..+.....|.|.++.. +|+|.|
T Consensus         6 ~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~Dsa~Y   84 (110)
T d2esvd1           6 PSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATL-RDTAVY   84 (110)
T ss_dssp             SEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCG-GGCEEE
T ss_pred             CEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhccccc-CCceEE
Confidence            357888999999999865433 336889973  22211      0   01112221 1122334489999998 999999


Q ss_pred             EEEeee
Q psy2442          85 ECVAEN   90 (111)
Q Consensus        85 ~c~~~~   90 (111)
                      .|.+..
T Consensus        85 yCa~~~   90 (110)
T d2esvd1          85 YCIVVR   90 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            998754

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.6e-06  Score=40.58  Aligned_cols=79  Identities=16%  Similarity=0.267  Sum_probs=45.1

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      .|.+...+.. .+..|.+++|.|.... ....+.+++.|.....................|.|..+.. .|.|.|.|...
T Consensus         4 kPsLsa~P~~-~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~-~~~G~Y~C~y~   80 (98)
T d1ugna2           4 KPTLSAQPSP-VVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSP-SRRWWYRCYAY   80 (98)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECSS-CCSEEEEEEC------CEEEC------CCEEEEEECCCCT-TSCEEEEEEEE
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeeccc-CCCeEEEEeeE
Confidence            4666656654 6889999999998643 2335666776664321100000000011224599999998 99999999865


Q ss_pred             eC
Q psy2442          90 NG   91 (111)
Q Consensus        90 ~~   91 (111)
                      ..
T Consensus        81 ~~   82 (98)
T d1ugna2          81 DS   82 (98)
T ss_dssp             CT
T ss_pred             cC
Confidence            43

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.45  E-value=4e-06  Score=40.89  Aligned_cols=76  Identities=24%  Similarity=0.391  Sum_probs=48.7

Q ss_pred             eEEcCcceeeecCCcEEEEEEEecc------CCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEc
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGD------PIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIE   73 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~------~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~   73 (111)
                      +.+.|..+.+.+|++++|.|...+.      ....+.|++.  |..+.           ....++.... +.....|.|.
T Consensus         4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~-s~~~~~L~I~   82 (113)
T d1q9ra1           4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG-SGTDFTLTIT   82 (113)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ETTEEEEEES
T ss_pred             EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeC-CCCeEeEEec
Confidence            3466777889999999999986532      1124889873  22111           1112333322 1133459999


Q ss_pred             cCCCCCCCeEEEEEeee
Q psy2442          74 PVRHARDDAVYECVAEN   90 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~   90 (111)
                      .++. +|+|.|.|....
T Consensus        83 ~l~~-~Dsa~YyCA~~~   98 (113)
T d1q9ra1          83 SVQA-EDLAVYYCKQSY   98 (113)
T ss_dssp             SCCG-GGCEEEEEEECS
T ss_pred             cccc-CCCeEEEecccC
Confidence            9998 999999998654

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.43  E-value=9e-07  Score=43.17  Aligned_cols=76  Identities=17%  Similarity=0.280  Sum_probs=47.6

Q ss_pred             EEcCcceeeecCCcEEEEEEEeccCCCeEEEEECC--eecc------C--------CCCceEEEeCCCCCeEEEEccCCC
Q psy2442          14 TLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNG--KRVS------G--------TQSRYMVQEFPPGGSLLRIEPVRH   77 (111)
Q Consensus        14 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~~------~--------~~~~~~~~~~~~~~~~l~~~~~~~   77 (111)
                      .+.|..+.+.+|++++|.|.... ....+.||+..  ..+.      .        ...++.....+.....|.|..+..
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   80 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARP   80 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCT
T ss_pred             EECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccc
Confidence            35666778899999999998643 34579999742  2110      0        011222221111233488889998


Q ss_pred             CCCCeEEEEEeeeC
Q psy2442          78 ARDDAVYECVAENG   91 (111)
Q Consensus        78 ~~d~g~y~c~~~~~   91 (111)
                       +|++.|.|.+...
T Consensus        81 -~Dsa~YyCA~~~~   93 (112)
T d2cdeb1          81 -SHTSQYLCASSEN   93 (112)
T ss_dssp             -TTCSEEEEEEECS
T ss_pred             -cccccEEEEEecC
Confidence             9999999987643

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.43  E-value=9.3e-07  Score=42.96  Aligned_cols=71  Identities=20%  Similarity=0.307  Sum_probs=47.3

Q ss_pred             ceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442          19 NQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      .+.+.+|++++|.|.........+.|++.  +..+.           ....++...... ....|.|.+++. +|++.|.
T Consensus         9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~l~~-~DsavYy   86 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSG-NMATLTISRVEA-GDEADYY   86 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-TEEEEEESSCCG-GGCEEEE
T ss_pred             eEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCC-CccceEEeeecc-CCCEEEE
Confidence            57888999999999865544457899864  22111           112333333222 344588999998 9999999


Q ss_pred             EEeeeC
Q psy2442          86 CVAENG   91 (111)
Q Consensus        86 c~~~~~   91 (111)
                      |.....
T Consensus        87 CA~~~~   92 (109)
T d1w72l1          87 CQVWDS   92 (109)
T ss_dssp             EEEEET
T ss_pred             EEecCC
Confidence            987654

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.43  E-value=1.7e-06  Score=42.19  Aligned_cols=74  Identities=20%  Similarity=0.398  Sum_probs=47.9

Q ss_pred             CcceeeecCCcEEEEEEEeccC---CCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDP---IPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARD   80 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d   80 (111)
                      |..+.+.+|++++|.|...+..   ...+.|++.  +..+.           ....++...... ....|.|..++. +|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~l~~-~D   84 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSG-NSASLTISGLQA-ED   84 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-TEEEEEECSCCG-GG
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCC-CEeeEEeCcCcc-cc
Confidence            4567889999999999876532   235899973  22110           112233333222 344588999998 99


Q ss_pred             CeEEEEEeeeCC
Q psy2442          81 DAVYECVAENGV   92 (111)
Q Consensus        81 ~g~y~c~~~~~~   92 (111)
                      ++.|.|...+..
T Consensus        85 sa~YyCa~~~~~   96 (112)
T d1lgva1          85 EADYYCSSYDGS   96 (112)
T ss_dssp             CEEEEEEEECSS
T ss_pred             CEEEEEeeecCC
Confidence            999999876533

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.43  E-value=3.3e-06  Score=40.26  Aligned_cols=77  Identities=14%  Similarity=0.226  Sum_probs=47.8

Q ss_pred             cCCCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442           8 LDPPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus         8 ~~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      .-+|.+...+.. .+..|.+++|.|.... ....+.++++|.............   .....+.+..+.. .|.|.|.|.
T Consensus         4 ~pkPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~---~~~~~f~~~~~~~-~~~G~Y~C~   77 (99)
T d1nkra2           4 YEKPSLSAQPGP-TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKV---NGTFQADFPLGPA-THGGTYRCF   77 (99)
T ss_dssp             SCCCEEEEESCS-EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEE---TTEEEEEEEEEEC-CSCEEEEEE
T ss_pred             CCCCEEEEeCCC-cccCCCeEEEEECCCC-CccEEEEEECCCccccEEEccccC---CccEEEEEecccc-ccCEEEEEE
Confidence            345666666654 6789999999997644 344778888875432110000111   0223366777776 899999997


Q ss_pred             eee
Q psy2442          88 AEN   90 (111)
Q Consensus        88 ~~~   90 (111)
                      ...
T Consensus        78 y~~   80 (99)
T d1nkra2          78 GSF   80 (99)
T ss_dssp             EEE
T ss_pred             eec
Confidence            654

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.42  E-value=6.4e-07  Score=43.50  Aligned_cols=72  Identities=21%  Similarity=0.381  Sum_probs=48.5

Q ss_pred             CcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCCCeE
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARDDAV   83 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~   83 (111)
                      |..+.+.+|++++|.|.........+.|++.  |..+.           ....++...... ....|.|.+++. +|++.
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~-~~~~L~I~~l~~-~Dsa~   83 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSG-TTATLTISGAQP-EDEAA   83 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEET-TEEEEEETTCCG-GGCSE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCC-CEeeeeEcCccc-cCCce
Confidence            4457888999999999875544447899873  22111           112345444322 344589999998 99999


Q ss_pred             EEEEeee
Q psy2442          84 YECVAEN   90 (111)
Q Consensus        84 y~c~~~~   90 (111)
                      |.|....
T Consensus        84 YyCA~~~   90 (108)
T d1nfde1          84 YYCLSSY   90 (108)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeec
Confidence            9998764

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.41  E-value=1.6e-06  Score=42.22  Aligned_cols=73  Identities=16%  Similarity=0.246  Sum_probs=46.7

Q ss_pred             cCcceeeecCCcEEEEEEEeccC-CCeEEEEEC--Ceecc-----------CCCCceEEEeCCCCCeEEEEccCCCCCCC
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDP-IPVIQWRKN--GKRVS-----------GTQSRYMVQEFPPGGSLLRIEPVRHARDD   81 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~d~   81 (111)
                      .|..+.+.+|++++|.|...+.. ...+.|++.  |..+.           ....++... .+.....|.|..+.. +|+
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~-~Ds   81 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIA-EDRKSSTLILHRATL-RDA   81 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEEC-TTSSEEEEEESSCCG-GGC
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeec-ccCCeeEEEEeeccc-ccc
Confidence            45567888999999999876543 335899973  22221           001122222 222334589999998 999


Q ss_pred             eEEEEEeee
Q psy2442          82 AVYECVAEN   90 (111)
Q Consensus        82 g~y~c~~~~   90 (111)
                      |.|.|....
T Consensus        82 a~YyCa~~~   90 (112)
T d1kgcd1          82 AVYYCILPL   90 (112)
T ss_dssp             EEEEEECCC
T ss_pred             eeEeeeEec
Confidence            999998654

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.40  E-value=8e-06  Score=40.23  Aligned_cols=77  Identities=18%  Similarity=0.378  Sum_probs=50.7

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceecc-----------CCCCceEEEeCC-CCCeEEEEccCC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRVS-----------GTQSRYMVQEFP-PGGSLLRIEPVR   76 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~-~~~~~l~~~~~~   76 (111)
                      +.+.+..+.+.+|++++|.|...+..  ...+.|++.  |+.+.           ....++...... .....|.|..+.
T Consensus         4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~   83 (120)
T d1hxma1           4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (120)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence            34556667889999999999987543  346899863  22111           112344433221 123559999999


Q ss_pred             CCCCCeEEEEEeee
Q psy2442          77 HARDDAVYECVAEN   90 (111)
Q Consensus        77 ~~~d~g~y~c~~~~   90 (111)
                      . +|+|.|.|....
T Consensus        84 ~-~Dsa~YyCA~~~   96 (120)
T d1hxma1          84 E-RDEGSYYCACDT   96 (120)
T ss_dssp             G-GGCEEEEEEEEC
T ss_pred             c-cCCceeecCccc
Confidence            8 999999998765

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=5e-06  Score=40.83  Aligned_cols=73  Identities=18%  Similarity=0.196  Sum_probs=44.3

Q ss_pred             CcceeeecCCcEEEEEEEeccCCC---eEEEEECCe--ecc-------C------CCCceEEEeCCCCCeEEEEccCCCC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIP---VIQWRKNGK--RVS-------G------TQSRYMVQEFPPGGSLLRIEPVRHA   78 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~--~~~-------~------~~~~~~~~~~~~~~~~l~~~~~~~~   78 (111)
                      |..+.+..|+.++|.|........   .+.|++...  .+.       .      ....+.....+.....|.|.++.. 
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-   84 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA-   84 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG-
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc-
Confidence            444677889999999997544333   488987422  110       0      001111111111234599999998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (118)
T d1i8lc_          85 MDTGLYICKVEL   96 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCEEEEEeEec
Confidence            999999998764

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.1e-05  Score=38.05  Aligned_cols=68  Identities=19%  Similarity=0.234  Sum_probs=41.2

Q ss_pred             ecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCC-CeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          23 KAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPG-GSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        23 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ..|+.++|.|.+.+..+.  .+.|.++|...... .........+. ........+.. .+...|.|.+....
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~-~~~~~~~~~~~t~~~~s~l~~~~-~~~~~ytC~V~H~s   83 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPE-LRGDVLHNGNGTYQSWVVVAVPP-QDTAPYSCHVQHSS   83 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCS-EEEEEEETTTTEEEEEEEEEECT-TCCSCEEEEEEETT
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCc-EEeeeecCCCCeEEEEEEeEeCC-CCCCEEEEEEEECC
Confidence            357899999999997665  67899999876532 11111111111 11122333444 55667999998754

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.32  E-value=6.9e-06  Score=40.48  Aligned_cols=77  Identities=14%  Similarity=0.267  Sum_probs=49.3

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceecc---------------CCCCceEEEeCC-CCCeEEEE
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRVS---------------GTQSRYMVQEFP-PGGSLLRI   72 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~~---------------~~~~~~~~~~~~-~~~~~l~~   72 (111)
                      +.+++..+.+..|++++|.|...+..  ...+.|++.  +..+.               ....++...... .....|.|
T Consensus         4 l~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I   83 (120)
T d1ypzf1           4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (120)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             eEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccc
Confidence            34555667788999999999876532  346899873  22110               011244443322 12344899


Q ss_pred             ccCCCCCCCeEEEEEeee
Q psy2442          73 EPVRHARDDAVYECVAEN   90 (111)
Q Consensus        73 ~~~~~~~d~g~y~c~~~~   90 (111)
                      .++.. +|++.|.|....
T Consensus        84 ~~l~~-~Dsa~YyCA~~~  100 (120)
T d1ypzf1          84 YSLEE-EDEAIYYCSYGE  100 (120)
T ss_dssp             CSCCG-GGCSEEEEEECC
T ss_pred             ccccc-ccceeEEEEEcC
Confidence            99998 999999998654

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.32  E-value=4.2e-06  Score=39.95  Aligned_cols=82  Identities=22%  Similarity=0.311  Sum_probs=45.6

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCC-ceEEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQS-RYMVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      .+|.+..-+.. .+..|+..+|.|.+.+..+.  .+.|+++|..+..... .......++.........+.. .+.+.|.
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~-~~~~~yt   79 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIP-SDDDIYD   79 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECC-CTTCCEE
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcC-CCCCEEE
Confidence            45655543322 34568889999999997554  7899999877642100 000111111111122223333 5566799


Q ss_pred             EEeeeCC
Q psy2442          86 CVAENGV   92 (111)
Q Consensus        86 c~~~~~~   92 (111)
                      |.+....
T Consensus        80 C~V~H~s   86 (100)
T d1muja1          80 CKVEHWG   86 (100)
T ss_dssp             EEEECTT
T ss_pred             EEEEECC
Confidence            9998754

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.32  E-value=2.9e-06  Score=40.03  Aligned_cols=66  Identities=23%  Similarity=0.345  Sum_probs=43.3

Q ss_pred             CCcEEEEEEEeccCCCeEEEEEC--Ceec------cC----CCCceEEEeC-CCCCeEEEEccCCCCCCCeEEEEEeeeC
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKN--GKRV------SG----TQSRYMVQEF-PPGGSLLRIEPVRHARDDAVYECVAENG   91 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~--~~~~------~~----~~~~~~~~~~-~~~~~~l~~~~~~~~~d~g~y~c~~~~~   91 (111)
                      |++++|.|.........+.|++.  +..+      ..    ...++..... ......|.|.+++. +|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~-~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQP-SDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCG-GGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeecccc-CcCccceeeEecC
Confidence            78899999987766678999873  2111      00    1134443322 22234599999998 9999999987643

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.1e-06  Score=41.77  Aligned_cols=75  Identities=11%  Similarity=0.162  Sum_probs=46.4

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      +|.+...+.. .+..|++++|.|... .....+.++++|.............   .....|.|.++.. .|.|.|.|...
T Consensus         4 kP~Lsa~Ps~-~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~---~~~a~F~i~~v~~-~~~G~Y~C~y~   77 (96)
T d1ugna1           4 KPTLWAEPGS-VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQEL---VKKGQFPIPSITW-EHTGRYRCYYG   77 (96)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHH---HTTTEEEESSCCG-GGCEEEEEEEE
T ss_pred             CCEEEeECCC-ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCC---CCEEEEEEEecCH-HHCCeEEEEEe
Confidence            4555555554 578999999999863 2334566777765321000000000   0234589999998 99999999865


Q ss_pred             e
Q psy2442          90 N   90 (111)
Q Consensus        90 ~   90 (111)
                      .
T Consensus        78 ~   78 (96)
T d1ugna1          78 S   78 (96)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.31  E-value=5.7e-06  Score=39.18  Aligned_cols=77  Identities=12%  Similarity=0.109  Sum_probs=46.7

Q ss_pred             CCeeEEcCcceeeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          10 PPEITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        10 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      .|.+...+. ..+..|.+++|.|.... ....+.++++|...... ..............|.|.++.. .|.|.|.|...
T Consensus         2 KPsLsa~P~-~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~-~~~~~~~~~~~~a~F~l~~v~~-~~~G~Y~C~y~   77 (96)
T d1nkra1           2 KPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTL-RLIGEHHDGVSKANFSISRMTQ-DLAGTYRCYGS   77 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEE-EEECEEETTEEEEEEEESSCCG-GGCEEEEEEEE
T ss_pred             CCEEEeeCC-CccCCCCcEEEEECCCC-CCCEEEEEECCCcCCce-eeeeeecCCceEEEEEEcccCc-ccCeEEEEEEE
Confidence            455555554 36889999999998643 23366777765432100 0000111000224489999998 99999999865


Q ss_pred             e
Q psy2442          90 N   90 (111)
Q Consensus        90 ~   90 (111)
                      .
T Consensus        78 ~   78 (96)
T d1nkra1          78 V   78 (96)
T ss_dssp             B
T ss_pred             c
Confidence            4

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.7e-05  Score=38.21  Aligned_cols=74  Identities=18%  Similarity=0.192  Sum_probs=46.0

Q ss_pred             cceeeecCCcEEEEEEEeccC--CCeEEEEECCe--e---c---c-----CCCCceEEEeC-CCCCeEEEEccCCCCCCC
Q psy2442          18 RNQAVKAGGITSFYCIARGDP--IPVIQWRKNGK--R---V---S-----GTQSRYMVQEF-PPGGSLLRIEPVRHARDD   81 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~---~---~-----~~~~~~~~~~~-~~~~~~l~~~~~~~~~d~   81 (111)
                      +.+...+|++++|.|......  ...+.|++...  .   +   .     ....++..... ......|.|.+++. +|+
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~-~Ds   82 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLRE-EDS   82 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCG-GGC
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCC-CCC
Confidence            346778999999999865432  23578986321  1   0   0     11234433322 22334488999998 999


Q ss_pred             eEEEEEeeeCC
Q psy2442          82 AVYECVAENGV   92 (111)
Q Consensus        82 g~y~c~~~~~~   92 (111)
                      |.|.|.+....
T Consensus        83 G~Y~C~v~~~~   93 (108)
T d1hkfa_          83 GHYWCRIYRPS   93 (108)
T ss_dssp             EEEEEEEECTT
T ss_pred             EEEEEEEecCC
Confidence            99999887543

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=8.8e-06  Score=39.83  Aligned_cols=73  Identities=18%  Similarity=0.244  Sum_probs=44.2

Q ss_pred             CcceeeecCCcEEEEEEEeccCCC---eEEEEEC--Ceecc------C-------CCCceEEEeCCCCCeEEEEccCCCC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPIP---VIQWRKN--GKRVS------G-------TQSRYMVQEFPPGGSLLRIEPVRHA   78 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~--~~~~~------~-------~~~~~~~~~~~~~~~~l~~~~~~~~   78 (111)
                      |..+.+..|++++|.|........   .+.|++.  ++.+.      .       ....+...........|.|.++.. 
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-   84 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRA-   84 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCG-
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCcc-
Confidence            444677889999999997543322   4779873  22110      0       001111111111334599999998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|+|.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (117)
T d1dqta_          85 VDTGLYLCKVEL   96 (117)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccCEeEEEEEec
Confidence            999999998753

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.1e-06  Score=41.87  Aligned_cols=74  Identities=16%  Similarity=0.298  Sum_probs=46.8

Q ss_pred             cceeeecCCcEEEEEEEecc--CCCeEEEEEC--Ceec------cCC--------CCceEEEeCC-CCCeEEEEccCCCC
Q psy2442          18 RNQAVKAGGITSFYCIARGD--PIPVIQWRKN--GKRV------SGT--------QSRYMVQEFP-PGGSLLRIEPVRHA   78 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~--~~~~------~~~--------~~~~~~~~~~-~~~~~l~~~~~~~~   78 (111)
                      ..+.+.+|++++|.|...+.  ....+.|++.  +...      ...        ..++.+.... .....|.|.++.. 
T Consensus         7 ~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~-   85 (113)
T d1smoa_           7 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQV-   85 (113)
T ss_dssp             EEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCG-
T ss_pred             CcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCc-
Confidence            34677789999999986532  3447889863  2111      000        1244444322 1234488999998 


Q ss_pred             CCCeEEEEEeeeCC
Q psy2442          79 RDDAVYECVAENGV   92 (111)
Q Consensus        79 ~d~g~y~c~~~~~~   92 (111)
                      +|+|.|.|.+....
T Consensus        86 ~Dsg~Y~Cav~~~~   99 (113)
T d1smoa_          86 EDSGLYQCVIYQPP   99 (113)
T ss_dssp             GGCEEEEEEECCTT
T ss_pred             ccCceEEEEEECCC
Confidence            99999999876543

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.1e-05  Score=37.91  Aligned_cols=85  Identities=19%  Similarity=0.202  Sum_probs=47.8

Q ss_pred             eeecCCcEEEEEEEec-cCCC--eEEEEECCeeccCCCCceEEEeCCC---CCeEEEEccCCCCCCCe-EEEEEeeeCCC
Q psy2442          21 AVKAGGITSFYCIARG-DPIP--VIQWRKNGKRVSGTQSRYMVQEFPP---GGSLLRIEPVRHARDDA-VYECVAENGVG   93 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~-~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~d~g-~y~c~~~~~~~   93 (111)
                      .+..|+.++|.|.+.+ .|.+  .+.|++++..+......... ...+   ....+.+....  .|.| .|.|.+.+..+
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~-~~~~~~~~~s~l~~~~~~--~D~g~~ltC~a~~~~~   88 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDA-DRKSLETKSLEVTFTPVI--EDIGKVLVCRAKLHID   88 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCC-SSCCCEEEEEEEEECCCG--GGTTCEEEEEEEECSC
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeecccccccc-ccCCcceeeEEEEccCCh--HHCCcEEEEEEEcCcC
Confidence            4679999999999876 4543  58899988876321000000 0000   11225554333  4554 79999998754


Q ss_pred             c------eEeeEEEEEEecCC
Q psy2442          94 D------AVSAEASLTVYEGE  108 (111)
Q Consensus        94 ~------~~~~~~~l~~~~~~  108 (111)
                      .      .+.....|.|.+.|
T Consensus        89 ~~~~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          89 EMDSVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             CCTTSCSEEEEEEECCEECCC
T ss_pred             CccccccccceeEEeEEEeCC
Confidence            2      12334446666554

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.24  E-value=9.1e-06  Score=39.49  Aligned_cols=75  Identities=17%  Similarity=0.413  Sum_probs=48.5

Q ss_pred             eEEcCcceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc------CC---------CCceEEEeCCCCCeEEEEccC
Q psy2442          13 ITLRPRNQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS------GT---------QSRYMVQEFPPGGSLLRIEPV   75 (111)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~------~~---------~~~~~~~~~~~~~~~l~~~~~   75 (111)
                      +.+.|..+.+.+|++++|.|.........+.||+.  |+.+.      ..         ..++.....  ....|.|...
T Consensus         4 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~--~~~~l~l~~~   81 (112)
T d1fo0b_           4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV--TDTELRLQVA   81 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEE--ETTEEEEEEE
T ss_pred             EEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccc--cccEEEEecC
Confidence            45667777888999999999876655568999975  32221      00         112222211  1234777778


Q ss_pred             CCCCCCeEEEEEeee
Q psy2442          76 RHARDDAVYECVAEN   90 (111)
Q Consensus        76 ~~~~d~g~y~c~~~~   90 (111)
                      .. +|++.|.|.+..
T Consensus        82 ~~-~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          82 NM-SQGRTLYCTCSA   95 (112)
T ss_dssp             SC-CSCEEEEEEEES
T ss_pred             Cc-cCCccEEEEEec
Confidence            87 999999998653

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.21  E-value=2.6e-05  Score=37.01  Aligned_cols=70  Identities=23%  Similarity=0.207  Sum_probs=40.8

Q ss_pred             eecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEE-eCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          22 VKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQ-EFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        22 ~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ...++.++|.|.+.+..+.  .+.|.++|..+.......... ..++.........+.. .+...|.|.+....
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~-~~~~~ytC~V~H~s   86 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTP-SYGDTYTCVVEHIG   86 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECC-CTTCCEEEEEECTT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCC-CCCCEEEEEEEeCC
Confidence            4567789999999997554  689999998774321111111 1111111122223344 55557999998864

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=8.5e-06  Score=40.01  Aligned_cols=74  Identities=20%  Similarity=0.219  Sum_probs=45.9

Q ss_pred             cCcceeeecCCcEEEEEEEeccC-------CCeEEEEECCeecc----------------CCCCceEEEeCC-CCCeEEE
Q psy2442          16 RPRNQAVKAGGITSFYCIARGDP-------IPVIQWRKNGKRVS----------------GTQSRYMVQEFP-PGGSLLR   71 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~~-------~~~~~w~~~~~~~~----------------~~~~~~~~~~~~-~~~~~l~   71 (111)
                      .+..+.+.+|+.+.|.|......       ...+.|++......                .-..|+.+.... .....|.
T Consensus         7 ~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   86 (121)
T d2g5ra1           7 MQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLS   86 (121)
T ss_dssp             CCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEE
T ss_pred             eCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEE
Confidence            34567899999999999864211       12467886532211                001344443221 1233499


Q ss_pred             EccCCCCCCCeEEEEEeee
Q psy2442          72 IEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        72 ~~~~~~~~d~g~y~c~~~~   90 (111)
                      |.++.. +|+|.|.|.+..
T Consensus        87 I~~v~~-~DsG~Y~C~v~~  104 (121)
T d2g5ra1          87 IRDARM-SDAGRYFFRMEK  104 (121)
T ss_dssp             ECSCCG-GGCEEEEEEEEE
T ss_pred             ECCCCh-HHCEEEEEEEEe
Confidence            999998 999999999865

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.9e-05  Score=36.60  Aligned_cols=65  Identities=20%  Similarity=0.380  Sum_probs=40.3

Q ss_pred             cCCcEEEEEEEec-cCCCeEEEEECCeeccCCCCceEEEeCCCCC----eEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          24 AGGITSFYCIARG-DPIPVIQWRKNGKRVSGTQSRYMVQEFPPGG----SLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        24 ~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      .++.+.|.|.+.+ .|.+.+.|++++..+... ............    ..|.+   .. .+...|.|.+.+..-
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~-~~~~~~~~~~g~y~v~S~L~v---~~-~~~~~~tC~V~h~~l   84 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAI-NTTVSQDPETELYAVSSKLDF---NM-TTNHSFMCLIKYGHL   84 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCS-EEEEEECTTTCCEEEEEEEEE---ET-TSCEEEEEEEEETTC
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEeccc-ceeeEecCCCccEEEEEEEEc---cC-CccceEEEEEEecCC
Confidence            5677899999987 576799999998877532 111111111111    12333   33 556789999988653

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.17  E-value=1.6e-05  Score=37.93  Aligned_cols=82  Identities=20%  Similarity=0.274  Sum_probs=44.2

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEE-eCCCCCeEEEEccCCCCCCCeEEE
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQ-EFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      .+|.+...+.. ....|+..+|.|.+.+..+.  .+.|.++|..+.......... ..++.........+.. .+...|.
T Consensus         4 v~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~-~~~~~yt   81 (101)
T d1fnga1           4 VAPEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP-STDDFYD   81 (101)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC-CTTCCEE
T ss_pred             cCCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC-CCCCEEE
Confidence            45655543222 34567788999999987543  789999998764321110011 1111111112222333 4455799


Q ss_pred             EEeeeCC
Q psy2442          86 CVAENGV   92 (111)
Q Consensus        86 c~~~~~~   92 (111)
                      |.+....
T Consensus        82 C~V~H~s   88 (101)
T d1fnga1          82 CEVDHWG   88 (101)
T ss_dssp             EEEECTT
T ss_pred             EEEEECC
Confidence            9998753

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.13  E-value=2.1e-05  Score=37.30  Aligned_cols=69  Identities=17%  Similarity=0.175  Sum_probs=38.1

Q ss_pred             ecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCce-EEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          23 KAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRY-MVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        23 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ..++..+|.|.+.+..+.  .+.|.++|.......... .....++.........+.. .+...|.|.+....
T Consensus        16 ~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~-~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          16 PLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVP-RSGEVYTCQVEHPS   87 (98)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCC-CTTCEEEEEEECTT
T ss_pred             ccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcC-CCCCEEEEEEEECC
Confidence            345667899999986655  689999988774320000 1111111222233334555 66778999998754

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=5.3e-05  Score=36.39  Aligned_cols=67  Identities=12%  Similarity=0.203  Sum_probs=40.1

Q ss_pred             eeeecCCcEEEEEEEeccCCC---eEEE--EECCeec----------c-CC----CCceEEEeCCCCCeEEEEccCCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIP---VIQW--RKNGKRV----------S-GT----QSRYMVQEFPPGGSLLRIEPVRHAR   79 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~---~~~w--~~~~~~~----------~-~~----~~~~~~~~~~~~~~~l~~~~~~~~~   79 (111)
                      +.+..|++++|.|........   .+.|  .+.....          . ..    ..+.....   ....|.|.+++. +
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~---~~~sL~I~~v~~-~   79 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDS---DSWTLRLHNLQI-K   79 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEET---TTTEEEECSCCG-G
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccC---CeEEEEECCCCh-h
Confidence            467789999999987543321   2333  3332211          0 00    11222221   334599999998 9


Q ss_pred             CCeEEEEEeee
Q psy2442          80 DDAVYECVAEN   90 (111)
Q Consensus        80 d~g~y~c~~~~   90 (111)
                      |+|.|.|.+..
T Consensus        80 D~G~Y~C~V~~   90 (110)
T d1ncna_          80 DKGLYQCIIHH   90 (110)
T ss_dssp             GCEEEEEEEEE
T ss_pred             HCEEEEEEEEe
Confidence            99999999864

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=2.3e-05  Score=37.95  Aligned_cols=73  Identities=14%  Similarity=0.259  Sum_probs=47.1

Q ss_pred             cceeeecCCcEEEEEEEecc--CCCeEEEEEC--Ceec----c--CC--------CCceEEEeCC-CCCeEEEEccCCCC
Q psy2442          18 RNQAVKAGGITSFYCIARGD--PIPVIQWRKN--GKRV----S--GT--------QSRYMVQEFP-PGGSLLRIEPVRHA   78 (111)
Q Consensus        18 ~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~--~~~~----~--~~--------~~~~~~~~~~-~~~~~l~~~~~~~~   78 (111)
                      +.+.+.+|+++++.|...+.  ....+.|++.  +...    .  ..        ..|+.+...+ ...-.+.|.+++. 
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~-   81 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQV-   81 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCG-
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECcccc-
Confidence            34678899999999997653  3447889874  2211    0  00        1244444321 1234488889998 


Q ss_pred             CCCeEEEEEeeeC
Q psy2442          79 RDDAVYECVAENG   91 (111)
Q Consensus        79 ~d~g~y~c~~~~~   91 (111)
                      +|+|.|.|.....
T Consensus        82 eDsa~YyCa~~~~   94 (110)
T d1u9ka_          82 TDSGLYRCVIYHP   94 (110)
T ss_dssp             GGCEEEEEEEECT
T ss_pred             CCCEEEEEEEeCC
Confidence            9999999987654

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=1.9e-05  Score=38.23  Aligned_cols=75  Identities=16%  Similarity=0.112  Sum_probs=46.0

Q ss_pred             cCcceeeecCCcEEEEEEEecc---C---CCeEEEEECCeecc--------------CCCCceEEEeCC-CCCeEEEEcc
Q psy2442          16 RPRNQAVKAGGITSFYCIARGD---P---IPVIQWRKNGKRVS--------------GTQSRYMVQEFP-PGGSLLRIEP   74 (111)
Q Consensus        16 ~~~~~~~~~g~~~~l~c~~~~~---~---~~~~~w~~~~~~~~--------------~~~~~~~~~~~~-~~~~~l~~~~   74 (111)
                      .|..+.+.+|+.+.|.|.....   .   ...+.|++......              ....++.+.... .....|.|.+
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            3455788999999999986521   1   12455766422110              112344443211 1233499999


Q ss_pred             CCCCCCCeEEEEEeeeC
Q psy2442          75 VRHARDDAVYECVAENG   91 (111)
Q Consensus        75 ~~~~~d~g~y~c~~~~~   91 (111)
                      ++. .|+|.|.|.+...
T Consensus        86 v~~-~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          86 LKP-EDSGTYNFRFEIS  101 (118)
T ss_dssp             CCG-GGCEEEEEEEECC
T ss_pred             CCh-hHCEEEEEEEEeC
Confidence            998 9999999988654

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.06  E-value=7e-05  Score=36.53  Aligned_cols=72  Identities=22%  Similarity=0.448  Sum_probs=46.7

Q ss_pred             eeeecCCcEEEEEEEeccCCC--eEEEEEC--Ceec------c----------CCCCceEEEeCCCCC-eEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIP--VIQWRKN--GKRV------S----------GTQSRYMVQEFPPGG-SLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~--~~~~------~----------~~~~~~~~~~~~~~~-~~l~~~~~~~~   78 (111)
                      -.+.+|+++.|.|.+.|....  .+.|++.  |+.+      .          .-..|+.+...+... -.|.+..+.. 
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~-   88 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS-   88 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC-
Confidence            467899999999999886433  5778753  2111      1          012355555433222 3388889998 


Q ss_pred             CCCeEEEEEeeeCC
Q psy2442          79 RDDAVYECVAENGV   92 (111)
Q Consensus        79 ~d~g~y~c~~~~~~   92 (111)
                      +|.+.|.|......
T Consensus        89 eDtAvYYCAr~~~~  102 (118)
T d2fbjh1          89 EDTALYYCARLHYY  102 (118)
T ss_dssp             GGCEEEEEEEEETT
T ss_pred             CcceEEEeeEecCC
Confidence            99999999866543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.05  E-value=5.2e-05  Score=37.14  Aligned_cols=69  Identities=23%  Similarity=0.365  Sum_probs=45.8

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------c---------CCCCceEEEeCCCC-CeEEEEccCCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------S---------GTQSRYMVQEFPPG-GSLLRIEPVRHAR   79 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~---------~~~~~~~~~~~~~~-~~~l~~~~~~~~~   79 (111)
                      -.+.+|+++.|.|.+.|...  ..+.|++.  |+.+      .         .-..|+.+...+.. .-.|.|.++.. +
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~-e   88 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA-A   88 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG-G
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccc-c
Confidence            36789999999999987543  36788863  2211      1         11246666543322 23388889998 9


Q ss_pred             CCeEEEEEee
Q psy2442          80 DDAVYECVAE   89 (111)
Q Consensus        80 d~g~y~c~~~   89 (111)
                      |.+.|.|...
T Consensus        89 DtA~YYCAr~   98 (120)
T d1dn0b1          89 DTAVYYCARP   98 (120)
T ss_dssp             GCEEEEEEEC
T ss_pred             cccEEEEEee
Confidence            9999999644

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=6.6e-05  Score=35.27  Aligned_cols=68  Identities=15%  Similarity=0.129  Sum_probs=40.3

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeeccCC-CCceEEE-eCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRVSGT-QSRYMVQ-EFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~-~~~~~~~-~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      .+...+|.|.+.+..+.  .+.|.++|..+... ....... ..++.........+.. .+...|.|.+....
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~-~~~~~ytC~V~H~s   85 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPP-GEEQRYTCQVEHPG   85 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECT-TCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECC-CCCCEEEEEEEeCC
Confidence            46678999999996443  78999999887422 1111121 2121222233334444 55667999998753

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.04  E-value=7.2e-05  Score=35.73  Aligned_cols=70  Identities=10%  Similarity=0.235  Sum_probs=41.3

Q ss_pred             eecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          22 VKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        22 ~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      +..|+..+|.|.+.+..+.  .+.|.++|...............++.........+.. .+...|.|.+....
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~-~~~~~ytC~V~H~~   86 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTP-EPSDIFSCIVTHEP   86 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECC-CTTCCEEEEEEETT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEec-CCCCEEEEEEEeCC
Confidence            3457888999999997655  6789999988654322222222121111111123344 55557999998864

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.04  E-value=3.7e-05  Score=37.43  Aligned_cols=69  Identities=25%  Similarity=0.497  Sum_probs=45.8

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------c---------CCCCceEEEeCCCCC-eEEEEccCCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------S---------GTQSRYMVQEFPPGG-SLLRIEPVRHAR   79 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~---------~~~~~~~~~~~~~~~-~~l~~~~~~~~~   79 (111)
                      ..+.+|+++.|.|.+.|...  ..+.|++.  |+.+      .         .-..|+.+...+... ..|.+.++.. +
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~-e   88 (117)
T d1c5db1          10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT-E   88 (117)
T ss_dssp             SEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCG-G
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccccc-C
Confidence            36789999999999987543  36788763  2221      0         112456555433222 3388889998 9


Q ss_pred             CCeEEEEEee
Q psy2442          80 DDAVYECVAE   89 (111)
Q Consensus        80 d~g~y~c~~~   89 (111)
                      |.+.|.|...
T Consensus        89 DtAvYYCAr~   98 (117)
T d1c5db1          89 DTAIYFCTRE   98 (117)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEecc
Confidence            9999999754

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.03  E-value=6.8e-05  Score=35.55  Aligned_cols=82  Identities=21%  Similarity=0.329  Sum_probs=44.5

Q ss_pred             CCCeeEEcCcceeeecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCce-EEEeCCCCCeEEEEccCCCCCCCeEEE
Q psy2442           9 DPPEITLRPRNQAVKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRY-MVQEFPPGGSLLRIEPVRHARDDAVYE   85 (111)
Q Consensus         9 ~~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~d~g~y~   85 (111)
                      .+|.+..-+.. ....++..+|.|.+.+..+.  .+.|.++|..+....... .....++.........+.. .+...|.
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~-~~~~~yt   81 (99)
T d1uvqa1           4 EVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP-SADEIYD   81 (99)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC-CTTCCEE
T ss_pred             cCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC-CCCCEEE
Confidence            35554432221 34567788999999997554  689999998764320000 0111111111122223333 4556799


Q ss_pred             EEeeeCC
Q psy2442          86 CVAENGV   92 (111)
Q Consensus        86 c~~~~~~   92 (111)
                      |.+....
T Consensus        82 C~V~H~s   88 (99)
T d1uvqa1          82 CKVEHWG   88 (99)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9998753

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.01  E-value=0.0001  Score=36.17  Aligned_cols=70  Identities=21%  Similarity=0.333  Sum_probs=44.9

Q ss_pred             eeeecCCcEEEEEEEeccC----CCeEEEEEC--Ceecc-------------C--CCCceEEEeCCC-CCeEEEEccCCC
Q psy2442          20 QAVKAGGITSFYCIARGDP----IPVIQWRKN--GKRVS-------------G--TQSRYMVQEFPP-GGSLLRIEPVRH   77 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~----~~~~~w~~~--~~~~~-------------~--~~~~~~~~~~~~-~~~~l~~~~~~~   77 (111)
                      ..+++|+++.|.|...|..    ...+.|++.  ++.+.             .  -..|+.+...+. ....|.|..++.
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~   89 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDP   89 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCG
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeee
Confidence            4578899999999987643    236889863  22110             0  023555443221 223488899998


Q ss_pred             CCCCeEEEEEeee
Q psy2442          78 ARDDAVYECVAEN   90 (111)
Q Consensus        78 ~~d~g~y~c~~~~   90 (111)
                       +|++.|.|....
T Consensus        90 -eDsAvYyCAr~~  101 (120)
T d2agjh1          90 -VDTATYYCARTS  101 (120)
T ss_dssp             -GGCEEEEEEEEC
T ss_pred             -ccceEEeeEecC
Confidence             999999997544

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.00  E-value=9.7e-05  Score=35.94  Aligned_cols=71  Identities=21%  Similarity=0.330  Sum_probs=46.5

Q ss_pred             eeeecCCcEEEEEEEeccCCC--eEEEEEC--Ceec------c---------CCCCceEEEeCCC-CCeEEEEccCCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIP--VIQWRKN--GKRV------S---------GTQSRYMVQEFPP-GGSLLRIEPVRHAR   79 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~--~~~~------~---------~~~~~~~~~~~~~-~~~~l~~~~~~~~~   79 (111)
                      ..+.+|+++.|.|.+.+....  .+.|++.  |+.+      .         .-..|+.+...+. ....|.+..+.. +
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~-e   88 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTA-A   88 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG-G
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccc-c
Confidence            467899999999999875433  6788763  2211      1         0123555543331 223488889998 9


Q ss_pred             CCeEEEEEeeeC
Q psy2442          80 DDAVYECVAENG   91 (111)
Q Consensus        80 d~g~y~c~~~~~   91 (111)
                      |.+.|.|.....
T Consensus        89 DtAvYyCAr~~~  100 (116)
T d7fabh1          89 DTAVYYCARNLI  100 (116)
T ss_dssp             GCEEEEEEEECS
T ss_pred             cceEEEeeeecC
Confidence            999999986543

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.1e-05  Score=38.62  Aligned_cols=70  Identities=20%  Similarity=0.290  Sum_probs=45.6

Q ss_pred             eeeecCCcEEEEEEEeccCC----CeEEEEECCeeccC-----------CCCceEEEeCCCCCeEEEEccCCCCCCCeEE
Q psy2442          20 QAVKAGGITSFYCIARGDPI----PVIQWRKNGKRVSG-----------TQSRYMVQEFPPGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~----~~~~w~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y   84 (111)
                      +....|++++|.|.......    ..+.|.+.+..+..           ...+.... .+ ....|.|.+++. +|+|.|
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~-g~~sL~I~~v~~-~D~G~Y   80 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-IT-NNLSIVILALRP-SDEGTY   80 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-ST-TTTEEEECSCCG-GGCEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeec-cC-CcEEEEECcCCh-HHCeEE
Confidence            56778999999997543221    25678776654310           01233332 12 234599999998 999999


Q ss_pred             EEEeeeCC
Q psy2442          85 ECVAENGV   92 (111)
Q Consensus        85 ~c~~~~~~   92 (111)
                      .|.+.+.-
T Consensus        81 ~C~V~~~~   88 (105)
T d1dr9a1          81 ECVVLKYE   88 (105)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEeCC
Confidence            99987653

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.00  E-value=0.0001  Score=36.06  Aligned_cols=70  Identities=23%  Similarity=0.487  Sum_probs=45.8

Q ss_pred             eeeecCCcEEEEEEEeccCCC--eEEEEEC--Ceec------c---------CCCCceEEEeCCCC-CeEEEEccCCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIP--VIQWRKN--GKRV------S---------GTQSRYMVQEFPPG-GSLLRIEPVRHAR   79 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~--~~~~------~---------~~~~~~~~~~~~~~-~~~l~~~~~~~~~   79 (111)
                      -.+.+|+++.|.|...+....  .+.|++.  |+.+      .         .-..|+.+...+.. ...|.+..+.. +
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~-e   87 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKP-D   87 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCG-G
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCc-C
Confidence            367899999999999875533  5788764  1111      1         01235655543312 23488889998 9


Q ss_pred             CCeEEEEEeee
Q psy2442          80 DDAVYECVAEN   90 (111)
Q Consensus        80 d~g~y~c~~~~   90 (111)
                      |+..|.|....
T Consensus        88 DtA~YYCAr~~   98 (119)
T d1kxvc_          88 DTAMYYCKPSL   98 (119)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CcceEeeeecc
Confidence            99999997554

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.00  E-value=9.9e-05  Score=35.92  Aligned_cols=70  Identities=17%  Similarity=0.401  Sum_probs=46.0

Q ss_pred             eeeecCCcEEEEEEEeccCCC--eEEEEEC--Ceec------c----------CCCCceEEEeCCCCC-eEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIP--VIQWRKN--GKRV------S----------GTQSRYMVQEFPPGG-SLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~--~~~~------~----------~~~~~~~~~~~~~~~-~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.|....  .+.|++.  |+.+      .          .-..|+.+...+... ..|.+.++.. 
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~-   88 (117)
T d1jnhb1          10 ELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTS-   88 (117)
T ss_dssp             EECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCC-
Confidence            467889999999999986443  6788763  2111      0          112466555433222 3388889998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (117)
T d1jnhb1          89 EDSAVYSCSRGR  100 (117)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEEeecC
Confidence            999999997543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.97  E-value=6.2e-05  Score=36.48  Aligned_cols=69  Identities=26%  Similarity=0.560  Sum_probs=44.9

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Cee------cc-C---------CCCceEEEeCCCC-CeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKR------VS-G---------TQSRYMVQEFPPG-GSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~------~~-~---------~~~~~~~~~~~~~-~~~l~~~~~~~~   78 (111)
                      -.+.+|+++.|.|.+.|...  ..+.|++.  |+.      +. .         -..|+.+...+.. .-.|.+..+.. 
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~-   88 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS-   88 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc-
Confidence            46789999999999987543  36778763  211      11 1         1235555543312 23388899998 


Q ss_pred             CCCeEEEEEee
Q psy2442          79 RDDAVYECVAE   89 (111)
Q Consensus        79 ~d~g~y~c~~~   89 (111)
                      +|.+.|.|...
T Consensus        89 eDtAvYYCA~~   99 (114)
T d1indh1          89 EDTALYFCASH   99 (114)
T ss_dssp             GGCEEEEEECG
T ss_pred             CcccEEEECCC
Confidence            99999999754

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.96  E-value=2.6e-05  Score=37.98  Aligned_cols=70  Identities=26%  Similarity=0.466  Sum_probs=45.2

Q ss_pred             eeeecCCcEEEEEEEeccC--CCeEEEEEC--Cee------cc----------CCCCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDP--IPVIQWRKN--GKR------VS----------GTQSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~------~~----------~~~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.|..  ...+.|++.  |+.      +.          .-..|+.+...+. ....|.+.++.. 
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~-   88 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRA-   88 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCC-
Confidence            4678999999999998754  336788763  111      11          0123555543221 223388889998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (117)
T d1jpth1          89 EDTAVYYCARDT  100 (117)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CCceEEEEeecC
Confidence            999999997543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.96  E-value=8.4e-05  Score=36.22  Aligned_cols=70  Identities=17%  Similarity=0.360  Sum_probs=44.6

Q ss_pred             ceeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceec------c----------CCCCceEEEeCCCC-CeEEEEccCCC
Q psy2442          19 NQAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRV------S----------GTQSRYMVQEFPPG-GSLLRIEPVRH   77 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~------~----------~~~~~~~~~~~~~~-~~~l~~~~~~~   77 (111)
                      ...+.+|+++.|.|.+.|..  ...+.|++.  |+.+      .          .-..|+.+...+.. ...|.+..+..
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~   88 (117)
T d1mfah1           9 TVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTS   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCC
Confidence            34678899999999998753  336778752  2211      1          01235555433312 23488889988


Q ss_pred             CCCCeEEEEEee
Q psy2442          78 ARDDAVYECVAE   89 (111)
Q Consensus        78 ~~d~g~y~c~~~   89 (111)
                       +|.+.|.|...
T Consensus        89 -eDtAvYYCAr~   99 (117)
T d1mfah1          89 -EDSAVYYCTRG   99 (117)
T ss_dssp             -GGCEEEEEEEE
T ss_pred             -CcceEEEEecc
Confidence             99999999753

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.96  E-value=0.00011  Score=36.02  Aligned_cols=71  Identities=24%  Similarity=0.516  Sum_probs=45.4

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Cee------cc--C--------CCCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKR------VS--G--------TQSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~------~~--~--------~~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.|...  ..+.|++.  |+.      +.  .        -..|+.+...+. ....|.+.++.. 
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~-   88 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKS-   88 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeecc-
Confidence            36789999999999987543  35788763  211      11  0        123455543221 223388889998 


Q ss_pred             CCCeEEEEEeeeC
Q psy2442          79 RDDAVYECVAENG   91 (111)
Q Consensus        79 ~d~g~y~c~~~~~   91 (111)
                      +|.+.|.|.....
T Consensus        89 eDtAvYYCAr~~~  101 (123)
T d1mqkh_          89 EDTAMYYCVRHEY  101 (123)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CcccceeEEecCC
Confidence            9999999976553

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.94  E-value=0.00011  Score=35.33  Aligned_cols=70  Identities=20%  Similarity=0.456  Sum_probs=45.4

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------c------------CCCCceEEEeCCC-CCeEEEEccCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------S------------GTQSRYMVQEFPP-GGSLLRIEPVR   76 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~------------~~~~~~~~~~~~~-~~~~l~~~~~~   76 (111)
                      ..+.+|+++.|.|.+.|...  -.+.|++.  |+.+      .            .-..|+.+...+. ....|.+..+.
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~   89 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLK   89 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCC
Confidence            46789999999999987543  36788753  2111      0            0123555554331 22338888999


Q ss_pred             CCCCCeEEEEEeee
Q psy2442          77 HARDDAVYECVAEN   90 (111)
Q Consensus        77 ~~~d~g~y~c~~~~   90 (111)
                      . +|.+.|.|...+
T Consensus        90 ~-eDTAvYYCAr~~  102 (109)
T d2ck0h1          90 T-EDTGIYYCVRGR  102 (109)
T ss_dssp             G-GGCEEEEEEEEC
T ss_pred             H-hHCEEEEEEEcC
Confidence            8 999999997543

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.93  E-value=2.3e-05  Score=37.63  Aligned_cols=68  Identities=24%  Similarity=0.444  Sum_probs=43.0

Q ss_pred             eeecCCcEEEEEEEeccC--CCeEEEEEC--Ceec------c---------CCCCceEEEeCCC-CCeEEEEccCCCCCC
Q psy2442          21 AVKAGGITSFYCIARGDP--IPVIQWRKN--GKRV------S---------GTQSRYMVQEFPP-GGSLLRIEPVRHARD   80 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~------~---------~~~~~~~~~~~~~-~~~~l~~~~~~~~~d   80 (111)
                      .+++|+++.|.|.+.+..  ...+.|++.  |+.+      .         ....|+.+...+. ....|.+.++.. +|
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~-eD   82 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEP-ED   82 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCG-GG
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCc-cc
Confidence            467899999999987643  336778764  1111      0         1123555554332 223488889998 99


Q ss_pred             CeEEEEEee
Q psy2442          81 DAVYECVAE   89 (111)
Q Consensus        81 ~g~y~c~~~   89 (111)
                      .+.|.|...
T Consensus        83 tAvYyCA~~   91 (107)
T d1sjva_          83 TAVYYCYTH   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             ceeeeEecc
Confidence            999999754

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.93  E-value=0.00011  Score=35.92  Aligned_cols=70  Identities=24%  Similarity=0.379  Sum_probs=44.9

Q ss_pred             eeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceec------c----------CCCCceEEEeCCCC-CeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRV------S----------GTQSRYMVQEFPPG-GSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~------~----------~~~~~~~~~~~~~~-~~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|...+..  ...+.|++.  |+.+      .          .-..|+.+...+.. ...|.+.++.. 
T Consensus        10 ~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~-   88 (119)
T d1qnzh_          10 ELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTS-   88 (119)
T ss_dssp             CEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECG-
T ss_pred             ceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCc-
Confidence            3677899999999988753  236788763  2211      0          01235555433312 23488889998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|++.|.|....
T Consensus        89 eDsAvYYCA~~~  100 (119)
T d1qnzh_          89 DDSAVYYCAIHY  100 (119)
T ss_dssp             GGCEEEEEEECS
T ss_pred             cceeEEEEEEec
Confidence            999999997543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.93  E-value=0.00012  Score=34.89  Aligned_cols=68  Identities=21%  Similarity=0.374  Sum_probs=39.1

Q ss_pred             cCCcEEEEEEEeccCC--CeEEEEEC--Ceec------c----------CCCCceEEEeCCC-CCeEEEEccCCCCCCCe
Q psy2442          24 AGGITSFYCIARGDPI--PVIQWRKN--GKRV------S----------GTQSRYMVQEFPP-GGSLLRIEPVRHARDDA   82 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~----------~~~~~~~~~~~~~-~~~~l~~~~~~~~~d~g   82 (111)
                      +|+++.|.|.+.|...  -.+.|++.  |+.+      .          .-..|+.+...+. ....|.+..+.. +|.+
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~-eDTA   79 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTS-EDSA   79 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC----CCS
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccc-cccE
Confidence            5889999999987543  36788753  2211      1          1124555543221 223488899998 9999


Q ss_pred             EEEEEeeeCC
Q psy2442          83 VYECVAENGV   92 (111)
Q Consensus        83 ~y~c~~~~~~   92 (111)
                      .|.|......
T Consensus        80 vYYCAr~~~~   89 (103)
T d1oari_          80 VYYCARMWYY   89 (103)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEeEEECCC
Confidence            9999765443

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.93  E-value=0.00011  Score=36.01  Aligned_cols=69  Identities=26%  Similarity=0.506  Sum_probs=44.7

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------c--CC--------CCceEEEeCCCCC-eEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------S--GT--------QSRYMVQEFPPGG-SLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~--~~--------~~~~~~~~~~~~~-~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.|...  ..+.|++.  |+.+      .  ..        ..|+.+...+... -.|.+.++.. 
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~-   88 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKP-   88 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCG-
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccc-
Confidence            46789999999999987543  36788763  2111      1  00        1355555433222 2388889988 


Q ss_pred             CCCeEEEEEee
Q psy2442          79 RDDAVYECVAE   89 (111)
Q Consensus        79 ~d~g~y~c~~~   89 (111)
                      +|.+.|.|...
T Consensus        89 eDtAvYYCAr~   99 (121)
T d2p49b1          89 EDTATYYCAAG   99 (121)
T ss_dssp             GGCEEEEEEES
T ss_pred             cceeEEeeecc
Confidence            99999999864

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.92  E-value=3e-05  Score=36.59  Aligned_cols=65  Identities=15%  Similarity=0.204  Sum_probs=37.2

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCCC---eEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGG---SLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      .++.++|.|.+.+..+.  .+.|++++...............++..   ..|.+.   . .+...|.|.+....
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~-~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---D-GEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---G-GGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---C-ccCCEEEEEEEeCC
Confidence            45689999999986654  678999888764321111111111111   113333   2 44456999988754

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.90  E-value=0.00012  Score=35.61  Aligned_cols=71  Identities=20%  Similarity=0.358  Sum_probs=46.2

Q ss_pred             eeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceec------c----------CCCCceEEEeCCCC-CeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRV------S----------GTQSRYMVQEFPPG-GSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~------~----------~~~~~~~~~~~~~~-~~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.|..  .-.+.|++.  |+.+      .          .-..|+.+...+.. ...|.+..+.. 
T Consensus        10 ~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~-   88 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRS-   88 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCc-
Confidence            4678899999999998753  336778763  2111      1          11245555543322 23488899998 


Q ss_pred             CCCeEEEEEeeeC
Q psy2442          79 RDDAVYECVAENG   91 (111)
Q Consensus        79 ~d~g~y~c~~~~~   91 (111)
                      +|.+.|.|.....
T Consensus        89 eDtAvYYCA~~~~  101 (117)
T d1iqdb1          89 DDTAVYYCAVPDP  101 (117)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             CcceEEEEeEcCC
Confidence            9999999986543

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.89  E-value=8.2e-05  Score=35.12  Aligned_cols=69  Identities=12%  Similarity=0.141  Sum_probs=36.6

Q ss_pred             ecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCce-EEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          23 KAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRY-MVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        23 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ..++..+|.|.+.+..+.  .+.|.++|.......... .....++.........+.. .+...|.|.+....
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~-~~~~~ytC~V~H~s   85 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTP-QRGDVYTCHVEHPS   85 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCS-CTTCCEEEEEECTT
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCC-CCCCEEEEEEEeCC
Confidence            345667899999987654  688999987654221110 0111111112222334444 55668999998754

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.89  E-value=0.00016  Score=35.45  Aligned_cols=70  Identities=24%  Similarity=0.479  Sum_probs=45.5

Q ss_pred             ceeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------c-C---------CCCceEEEeCCCC-CeEEEEccCCC
Q psy2442          19 NQAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------S-G---------TQSRYMVQEFPPG-GSLLRIEPVRH   77 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~-~---------~~~~~~~~~~~~~-~~~l~~~~~~~   77 (111)
                      ...+.+|+++.|.|.+.|...  ..+.|++.  |+.+      . .         -..|+.+...+.. .-.|.+.++..
T Consensus        10 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~   89 (122)
T d1vgeh1          10 AEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRP   89 (122)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCC
Confidence            346789999999999987543  36788763  1111      1 0         1245555543312 23388889998


Q ss_pred             CCCCeEEEEEee
Q psy2442          78 ARDDAVYECVAE   89 (111)
Q Consensus        78 ~~d~g~y~c~~~   89 (111)
                       +|.+.|.|...
T Consensus        90 -eDtA~YYCAr~  100 (122)
T d1vgeh1          90 -EDTAVYYCARD  100 (122)
T ss_dssp             -GGCEEEEEEEE
T ss_pred             -CcceEEEEeec
Confidence             99999999765

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.89  E-value=0.00018  Score=35.21  Aligned_cols=70  Identities=23%  Similarity=0.414  Sum_probs=45.1

Q ss_pred             eeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceec------c-C---------CCCceEEEeCCCC-CeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRV------S-G---------TQSRYMVQEFPPG-GSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~------~-~---------~~~~~~~~~~~~~-~~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.+..  ...+.|++.  |+.+      . .         -..|+.+...+.. .-.|.+..+.. 
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~-   88 (120)
T d1pg7x1          10 ELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTS-   88 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCC-
Confidence            4678899999999988654  336788763  2211      1 0         0235555433312 23388889988 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|....
T Consensus        89 eDtA~YYCAr~~  100 (120)
T d1pg7x1          89 NDSAVYYCARED  100 (120)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CcceEEEeeecC
Confidence            999999998653

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.89  E-value=6e-05  Score=36.74  Aligned_cols=69  Identities=25%  Similarity=0.441  Sum_probs=44.4

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Cee------cc-CC---------CCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKR------VS-GT---------QSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~------~~-~~---------~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.|...  ..+.|++.  |+.      +. ..         ..|+.+...+. ..-.|.+..+.. 
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~-   88 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKN-   88 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeeccc-
Confidence            46789999999999987543  36788763  211      11 00         23555543221 223388889998 


Q ss_pred             CCCeEEEEEee
Q psy2442          79 RDDAVYECVAE   89 (111)
Q Consensus        79 ~d~g~y~c~~~   89 (111)
                      +|.+.|.|...
T Consensus        89 eDtAvYYCAr~   99 (118)
T d1nlbh1          89 EDTATYFCARF   99 (118)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeee
Confidence            99999999643

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.89  E-value=0.00012  Score=35.50  Aligned_cols=72  Identities=24%  Similarity=0.456  Sum_probs=45.8

Q ss_pred             CcceeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------c-C---------CCCceEEEeCCCC-CeEEEEccC
Q psy2442          17 PRNQAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------S-G---------TQSRYMVQEFPPG-GSLLRIEPV   75 (111)
Q Consensus        17 ~~~~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~-~---------~~~~~~~~~~~~~-~~~l~~~~~   75 (111)
                      .....+.+|+++.|.|.+.|...  ..+.|++.  |+.+      . .         -..|+.+...+.. ...|.+..+
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL   86 (116)
T d1mjuh1           7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (116)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccccc
Confidence            33457889999999999987543  36778752  2111      1 1         1235555443322 234888899


Q ss_pred             CCCCCCeEEEEEee
Q psy2442          76 RHARDDAVYECVAE   89 (111)
Q Consensus        76 ~~~~d~g~y~c~~~   89 (111)
                      .. +|.+.|.|...
T Consensus        87 ~~-eDtAvYYCAr~   99 (116)
T d1mjuh1          87 TS-DDSAVYYCANK   99 (116)
T ss_dssp             CG-GGCEEEEEEEE
T ss_pred             CC-CCceEEEEccc
Confidence            88 99999999753

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.89  E-value=0.0001  Score=35.84  Aligned_cols=70  Identities=23%  Similarity=0.398  Sum_probs=44.7

Q ss_pred             eeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceec------cCC----------CCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRV------SGT----------QSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~------~~~----------~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.|..  ...+.|++.  |+.+      ...          ..|+.+...+. ....|.|.++.. 
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~-   88 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTF-   88 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCc-
Confidence            3578899999999988753  336788763  2211      100          13554443221 223488999998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (115)
T d1f3dh1          89 EDSAVYYCANDY  100 (115)
T ss_dssp             GGCEEEEEEECT
T ss_pred             CCcEEEEEeccC
Confidence            999999997543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.88  E-value=7.5e-05  Score=36.32  Aligned_cols=70  Identities=21%  Similarity=0.391  Sum_probs=45.1

Q ss_pred             eeeecCCcEEEEEEEeccCCC--eEEEEEC--Ceec------c---------CCCCceEEEeCCC-CCeEEEEccCCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIP--VIQWRKN--GKRV------S---------GTQSRYMVQEFPP-GGSLLRIEPVRHAR   79 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~--~~~~------~---------~~~~~~~~~~~~~-~~~~l~~~~~~~~~   79 (111)
                      ..+.+|+++.|.|.+.|....  .+.|++.  |..+      .         .-..|+.+...+. ..-.|.+.++.. +
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~-e   88 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHT-D   88 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCG-G
T ss_pred             ceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeee-c
Confidence            367899999999999875433  6778763  2211      1         0113444443221 223388889998 9


Q ss_pred             CCeEEEEEeee
Q psy2442          80 DDAVYECVAEN   90 (111)
Q Consensus        80 d~g~y~c~~~~   90 (111)
                      |.+.|.|....
T Consensus        89 DTAvYYCAr~~   99 (116)
T d1a2yb_          89 DTARYYCARER   99 (116)
T ss_dssp             GCEEEEEEEES
T ss_pred             cceEEEEEEeC
Confidence            99999998654

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.87  E-value=0.00019  Score=34.94  Aligned_cols=71  Identities=23%  Similarity=0.413  Sum_probs=46.2

Q ss_pred             ceeeecCCcEEEEEEEeccCC--CeEEEEEC--Cee------cc--C--------CCCceEEEeCCC-CCeEEEEccCCC
Q psy2442          19 NQAVKAGGITSFYCIARGDPI--PVIQWRKN--GKR------VS--G--------TQSRYMVQEFPP-GGSLLRIEPVRH   77 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~------~~--~--------~~~~~~~~~~~~-~~~~l~~~~~~~   77 (111)
                      ...+.+|+++.|.|.+.|...  -.+.|++.  |+.      +.  .        -..|+.+...+. ....|.+.+++.
T Consensus         8 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~   87 (117)
T d1um5h1           8 PVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTS   87 (117)
T ss_dssp             CEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCC
Confidence            346789999999999987543  36888763  211      11  0        123555543331 223488889998


Q ss_pred             CCCCeEEEEEeee
Q psy2442          78 ARDDAVYECVAEN   90 (111)
Q Consensus        78 ~~d~g~y~c~~~~   90 (111)
                       +|.+.|.|....
T Consensus        88 -eDtAvYYCAr~~   99 (117)
T d1um5h1          88 -EDSAVYYCARSS   99 (117)
T ss_dssp             -GGCEEEEEEEEE
T ss_pred             -CcceEEEEeecc
Confidence             999999997544

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.86  E-value=0.00014  Score=35.51  Aligned_cols=70  Identities=24%  Similarity=0.477  Sum_probs=45.5

Q ss_pred             eeeecCCcEEEEEEEeccCCC--eEEEEEC--Cee------cc----------CCCCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIP--VIQWRKN--GKR------VS----------GTQSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~--~~~------~~----------~~~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      -.+.+|+++.|.|.+.|....  .+.|++.  |+.      +.          .-..|+.+...+. ....|.+..+.. 
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~-   88 (119)
T d1rz7h1          10 EVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRS-   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCc-
Confidence            457889999999999875533  6788753  111      11          1123555554332 223388889998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (119)
T d1rz7h1          89 EDTAVYYCAADP  100 (119)
T ss_dssp             GGCEEEEEEECT
T ss_pred             ccceEEEEeecC
Confidence            999999997643

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.85  E-value=0.00017  Score=33.62  Aligned_cols=66  Identities=18%  Similarity=0.258  Sum_probs=38.8

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCCC-eEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGG-SLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      .+..++|.|.+.|..+.  .+.|.++|......  ........+.. .......+.. .+...|.|.+....
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~--~~~~~~~~dgty~~~S~l~v~~-~~~~~ytC~V~H~s   82 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSG--NCSTGPNGDGSFHAWSLLEVKR-GDEHHYQCQVEHEG   82 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCC--EEEEEECSSSCEEEEEEEEEET-TCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCcc--CccceecCCCCEeEEEEEEECC-CCCCEEEEEEEeCC
Confidence            45678999999996554  68999999876432  22222211111 1122223333 45567999988753

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.84  E-value=0.00023  Score=35.06  Aligned_cols=69  Identities=20%  Similarity=0.387  Sum_probs=45.0

Q ss_pred             eeeecCCcEEEEEEEeccCCC--eEEEEEC--Ceec------c-C---------CCCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIP--VIQWRKN--GKRV------S-G---------TQSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~--~~~~------~-~---------~~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.|....  .+.|++.  |+.+      . .         -..|+.+...+. ..-.|.+.++.. 
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~-   87 (126)
T d1lmka1           9 ELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTS-   87 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             ceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCC-
Confidence            467889999999999886433  5778762  2111      1 0         124555543331 223488889998 


Q ss_pred             CCCeEEEEEee
Q psy2442          79 RDDAVYECVAE   89 (111)
Q Consensus        79 ~d~g~y~c~~~   89 (111)
                      +|.+.|.|...
T Consensus        88 eDTAvYYCAr~   98 (126)
T d1lmka1          88 EDSAVYYCARG   98 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeec
Confidence            99999999753

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.84  E-value=0.00015  Score=35.80  Aligned_cols=70  Identities=20%  Similarity=0.395  Sum_probs=44.6

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------c----------CCCCceEEEeCCCC-CeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------S----------GTQSRYMVQEFPPG-GSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~----------~~~~~~~~~~~~~~-~~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.|...  ..+.|++.  |+.+      .          .-..|+.+...+.. .-.|.+..+.. 
T Consensus        10 ~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~-   88 (125)
T d1rihh1          10 ELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTS-   88 (125)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCc-
Confidence            46789999999999987542  35777653  2111      0          01235555443322 23388889988 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|....
T Consensus        89 eDtAvYYCAR~~  100 (125)
T d1rihh1          89 EDSAVYYCARES  100 (125)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEEeeeC
Confidence            999999997543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.83  E-value=8.2e-05  Score=36.64  Aligned_cols=69  Identities=28%  Similarity=0.560  Sum_probs=44.9

Q ss_pred             eeeecCCcEEEEEEEeccCCC--eEEEEEC--Cee------ccCC----------CCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIP--VIQWRKN--GKR------VSGT----------QSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~--~~~------~~~~----------~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      -.+.+|+++.|.|.+.|....  .+.|++.  |+.      +...          ..|+.+...+. ..-.|.+..+.. 
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~-   87 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKS-   87 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG-
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccC-
Confidence            367789999999999876543  6888863  211      1110          23555543321 223388889988 


Q ss_pred             CCCeEEEEEee
Q psy2442          79 RDDAVYECVAE   89 (111)
Q Consensus        79 ~d~g~y~c~~~   89 (111)
                      +|.+.|.|...
T Consensus        88 eDtAvYYCAr~   98 (124)
T d1zvya1          88 EDTAIYTCGAT   98 (124)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEeec
Confidence            99999999764

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=0.00016  Score=33.03  Aligned_cols=83  Identities=16%  Similarity=0.269  Sum_probs=50.5

Q ss_pred             eeeecCCcEEEEEEEe-ccCCCeEEEEECCeec--cCC--CCceEEEeCCCCCe--EEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          20 QAVKAGGITSFYCIAR-GDPIPVIQWRKNGKRV--SGT--QSRYMVQEFPPGGS--LLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~--~~~--~~~~~~~~~~~~~~--~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ..+..|+.+.+.|.+. -...|.+.|-+-....  ...  ..+......++...  .|.+..+.. +|.|.|.|.++-..
T Consensus        13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~-sDnGsYrCSanf~s   91 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHL-SDNGSYSCSTNFNS   91 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCG-GGCEEEEEEEEETT
T ss_pred             eeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeee-cCCCceEEecCCCh
Confidence            4677899999999974 4556789997643321  111  01222222221222  277788888 99999999998766


Q ss_pred             CceEeeEEEEE
Q psy2442          93 GDAVSAEASLT  103 (111)
Q Consensus        93 ~~~~~~~~~l~  103 (111)
                      +...+..+++.
T Consensus        92 ~vieSHSvti~  102 (104)
T d1xaua_          92 QVINSHSVTIH  102 (104)
T ss_dssp             EEEECCCEEEE
T ss_pred             hheecceEEEE
Confidence            54334444443

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.83  E-value=0.00019  Score=35.25  Aligned_cols=71  Identities=18%  Similarity=0.315  Sum_probs=45.6

Q ss_pred             ceeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------c----------CCCCceEEEeCCCC-CeEEEEccCCC
Q psy2442          19 NQAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------S----------GTQSRYMVQEFPPG-GSLLRIEPVRH   77 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~----------~~~~~~~~~~~~~~-~~~l~~~~~~~   77 (111)
                      ...+.+|+++.|.|.+.|...  -.+.|++.  |+.+      .          .-..|+.+...+.. ...|.+..+..
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~   88 (124)
T d2b1hh1           9 AEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKP   88 (124)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecccc
Confidence            346789999999999987543  25778752  1111      1          11245555543322 23488889998


Q ss_pred             CCCCeEEEEEeee
Q psy2442          78 ARDDAVYECVAEN   90 (111)
Q Consensus        78 ~~d~g~y~c~~~~   90 (111)
                       +|.+.|.|....
T Consensus        89 -eDTA~YYCAR~~  100 (124)
T d2b1hh1          89 -SDTALYYCARLG  100 (124)
T ss_dssp             -GGCEEEEEEEEE
T ss_pred             -ccceEEEEeecC
Confidence             999999996543

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.83  E-value=0.00011  Score=36.29  Aligned_cols=70  Identities=24%  Similarity=0.476  Sum_probs=44.1

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------c-C---------CCCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------S-G---------TQSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~-~---------~~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      -.+.+|+++.|.|.+.+...  -.+.|++.  |+.+      . .         -..|+.+...+. ..-.|.+..+.. 
T Consensus         9 ~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~-   87 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP-   87 (126)
T ss_dssp             EEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG-
T ss_pred             ceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc-
Confidence            35778999999999887543  36788763  2211      1 1         113555543331 223388889998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|....
T Consensus        88 eDTAvYYCAr~~   99 (126)
T d1rjca1          88 EDTAMYYCAADT   99 (126)
T ss_dssp             GGCEEEEEEECC
T ss_pred             ccCceeEEEeec
Confidence            999999997543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.80  E-value=0.00025  Score=34.87  Aligned_cols=70  Identities=26%  Similarity=0.426  Sum_probs=45.2

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------c----------CCCCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------S----------GTQSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~----------~~~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      -.+.+|+++.|.|.+.+...  ..+.|++.  |+.+      .          .-..|+.+...+. ....|.+..+.. 
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~-   88 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV-   88 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCC-
Confidence            36789999999999987542  36788763  1111      0          1124555554331 223388889998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (125)
T d1op3h1          89 EDTAIYYCARKG  100 (125)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceeEeEeecc
Confidence            999999997643

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.80  E-value=0.00023  Score=34.66  Aligned_cols=70  Identities=19%  Similarity=0.348  Sum_probs=44.6

Q ss_pred             eeeecCCcEEEEEEEeccC--CCeEEEEEC--Cee------cc----------CCCCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDP--IPVIQWRKN--GKR------VS----------GTQSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~------~~----------~~~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.|..  .-.+.|++.  |+.      +.          .-..|+.+...+. ....|.+.++.. 
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~-   88 (118)
T d1ct8b1          10 VLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTT-   88 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCC-
Confidence            4678899999999998754  336778753  221      11          0123454443221 223388889998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (118)
T d1ct8b1          89 EDSAIYYCARYR  100 (118)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CcceEEEEeeec
Confidence            999999997654

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.79  E-value=0.00022  Score=34.81  Aligned_cols=70  Identities=23%  Similarity=0.403  Sum_probs=45.5

Q ss_pred             eeeecCCcEEEEEEEeccCCC---eEEEEEC--Ceec------c---------CCCCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIP---VIQWRKN--GKRV------S---------GTQSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~---~~~w~~~--~~~~------~---------~~~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.|....   .+.|++.  |+.+      .         .-..|+.+...+. ..-.|.+.+++. 
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~-   88 (119)
T d1ncwh1          10 GLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTT-   88 (119)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             cEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccccc-
Confidence            467899999999999986542   4678752  3221      0         0123555554331 223388889998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|...|.|....
T Consensus        89 eDTAvYYCAr~~  100 (119)
T d1ncwh1          89 EDTATYYCAGLL  100 (119)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCceEEEEeEec
Confidence            999999997554

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.79  E-value=9.5e-07  Score=41.96  Aligned_cols=73  Identities=23%  Similarity=0.391  Sum_probs=45.1

Q ss_pred             ceeeecCCcEEEEEEEeccCCCeEEEEEC--Ceecc-----------CCCCceEEEeCC-CCCeEEEEccCCCCCCCeEE
Q psy2442          19 NQAVKAGGITSFYCIARGDPIPVIQWRKN--GKRVS-----------GTQSRYMVQEFP-PGGSLLRIEPVRHARDDAVY   84 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~-----------~~~~~~~~~~~~-~~~~~l~~~~~~~~~d~g~y   84 (111)
                      .+.+.+|++++|.|.... ....+.|++.  +..+.           ....++...... .....|.|.++.. +|+|.|
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~-~Dsa~Y   79 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRA-ADTASY   79 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCS-TTCSCC
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCc-ccCEEE
Confidence            357889999999997654 2347899873  22221           011233222111 1123488889998 999999


Q ss_pred             EEEeeeCCC
Q psy2442          85 ECVAENGVG   93 (111)
Q Consensus        85 ~c~~~~~~~   93 (111)
                      .|.+....+
T Consensus        80 yCA~~~~~g   88 (96)
T d1ymmd1          80 FCATDTTSG   88 (96)
T ss_dssp             EEEEEETTS
T ss_pred             eEeEecCCC
Confidence            998766544

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.79  E-value=0.00028  Score=34.45  Aligned_cols=70  Identities=23%  Similarity=0.447  Sum_probs=44.9

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------c-C---------CCCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------S-G---------TQSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~-~---------~~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      -.+.+|+++.|.|.+.+...  -.+.|++.  |+.+      . .         -..|+.+...+. ..-.|.+..+.. 
T Consensus        10 ~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~-   88 (120)
T d1ad9b1          10 EVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRS-   88 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCC-
Confidence            46789999999999987543  36778753  1111      0 0         124555543331 223388889998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (120)
T d1ad9b1          89 EDTAFYFCAREK  100 (120)
T ss_dssp             GGCEEEEEEEEB
T ss_pred             CcceEEEEEEcC
Confidence            999999997543

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.79  E-value=0.0003  Score=34.81  Aligned_cols=70  Identities=20%  Similarity=0.376  Sum_probs=45.5

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------c----------CCCCceEEEeCCCCC-eEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------S----------GTQSRYMVQEFPPGG-SLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~----------~~~~~~~~~~~~~~~-~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.|...  -.+.|++.  |+.+      .          .-..|+.+...+... -.|.+..+.. 
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~-   87 (130)
T d1rhhb1           9 EVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRS-   87 (130)
T ss_dssp             EEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             ceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCC-
Confidence            45789999999999987543  36788763  2211      0          012355555433222 3388889998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|....
T Consensus        88 eDtAvYyCAr~~   99 (130)
T d1rhhb1          88 DDTAVYYCARDF   99 (130)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CCcEEEEEEeec
Confidence            999999997653

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.79  E-value=0.00028  Score=34.35  Aligned_cols=71  Identities=24%  Similarity=0.435  Sum_probs=46.3

Q ss_pred             eeeecCCcEEEEEEEeccCCC--eEEEEEC--Ceec------c---------CCCCceEEEeCCCC-CeEEEEccCCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIP--VIQWRKN--GKRV------S---------GTQSRYMVQEFPPG-GSLLRIEPVRHAR   79 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~--~~~~------~---------~~~~~~~~~~~~~~-~~~l~~~~~~~~~   79 (111)
                      ..+.+|+++.|.|.+.|....  .+.|++.  |+.+      .         .-..|+.+...+.. ...|.+..+.. +
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~-e   88 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRS-E   88 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCG-G
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccC-C
Confidence            357889999999999876533  6788763  2111      1         11235555543322 23488889998 9


Q ss_pred             CCeEEEEEeeeC
Q psy2442          80 DDAVYECVAENG   91 (111)
Q Consensus        80 d~g~y~c~~~~~   91 (111)
                      |.+.|.|.....
T Consensus        89 DtA~YyCAr~~~  100 (118)
T d1lo4h1          89 DTAIYYCARGTS  100 (118)
T ss_dssp             GCEEEEEEEEET
T ss_pred             cceEEEecccCC
Confidence            999999976543

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.78  E-value=0.00027  Score=35.19  Aligned_cols=70  Identities=20%  Similarity=0.288  Sum_probs=44.9

Q ss_pred             eeeecCCcEEEEEEEeccC----CCeEEEEEC--Ceec------cC---------CCCceEEEeCCCC-CeEEEEccCCC
Q psy2442          20 QAVKAGGITSFYCIARGDP----IPVIQWRKN--GKRV------SG---------TQSRYMVQEFPPG-GSLLRIEPVRH   77 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~----~~~~~w~~~--~~~~------~~---------~~~~~~~~~~~~~-~~~l~~~~~~~   77 (111)
                      ..+++|+++.|.|...|..    ...+.|++.  |..+      ..         -..|+.+...+.. .-.|.|..+..
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~   89 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSP   89 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCc
Confidence            3678899999999987643    235889863  2211      00         0235554433312 23388899998


Q ss_pred             CCCCeEEEEEeee
Q psy2442          78 ARDDAVYECVAEN   90 (111)
Q Consensus        78 ~~d~g~y~c~~~~   90 (111)
                       +|++.|.|....
T Consensus        90 -eDtAvYYCAr~~  101 (132)
T d1tjgh1          90 -VDTATYFCAHRR  101 (132)
T ss_dssp             -GGCEEEEEEEEC
T ss_pred             -ccceEEEEEEec
Confidence             999999997543

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.78  E-value=0.00027  Score=34.81  Aligned_cols=70  Identities=24%  Similarity=0.474  Sum_probs=45.1

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Cee------cc-C---------CCCceEEEeCCCC-CeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKR------VS-G---------TQSRYMVQEFPPG-GSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~------~~-~---------~~~~~~~~~~~~~-~~~l~~~~~~~~   78 (111)
                      -.+.+|+++.|.|.+.|...  ..+.|++.  |+.      +. .         -..|+.+...+.. ...|.+..+.. 
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~-   88 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRA-   88 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             ceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeecc-
Confidence            35789999999999987543  36788763  211      11 0         0235555543312 23388889998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|....
T Consensus        89 eDtavYYCAr~~  100 (126)
T d1dfbh1          89 EDMALYYCVKGR  100 (126)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEEEecc
Confidence            999999997543

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.78  E-value=0.00022  Score=34.90  Aligned_cols=70  Identities=27%  Similarity=0.484  Sum_probs=45.0

Q ss_pred             eeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceec------c-C---------CCCceEEEeCCCC-CeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRV------S-G---------TQSRYMVQEFPPG-GSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~------~-~---------~~~~~~~~~~~~~-~~~l~~~~~~~~   78 (111)
                      -.+.+|+++.|.|.+.+..  .-.+.|++.  |..+      . .         -..|+.+...+.. ...|.+..+.. 
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~-   88 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRA-   88 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccc-
Confidence            3567899999999998743  236778753  2211      1 0         1235555543322 23488889998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (121)
T d1ol0a_          89 EDTAVYYCAREP  100 (121)
T ss_dssp             GGCEEEEEEECC
T ss_pred             ccceEEEEEEec
Confidence            999999997543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.76  E-value=0.00012  Score=35.71  Aligned_cols=69  Identities=22%  Similarity=0.380  Sum_probs=44.4

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Cee------ccCC----------CCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKR------VSGT----------QSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~------~~~~----------~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.|...  ..+.|++.  |+.      +...          ..|+.+...+. ..-.|.+..++. 
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~-   88 (119)
T d1eapb1          10 ELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTS-   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccC-
Confidence            46789999999999987543  36888863  211      1111          13554443221 223488889998 


Q ss_pred             CCCeEEEEEee
Q psy2442          79 RDDAVYECVAE   89 (111)
Q Consensus        79 ~d~g~y~c~~~   89 (111)
                      +|.+.|.|...
T Consensus        89 eDTAvYYCAr~   99 (119)
T d1eapb1          89 EDSAVYFCKRS   99 (119)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEEEe
Confidence            99999999753

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.76  E-value=8.4e-05  Score=36.49  Aligned_cols=70  Identities=24%  Similarity=0.503  Sum_probs=44.6

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------cC----------CCCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------SG----------TQSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~~----------~~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.+...  -.+.|++.  |+.+      ..          -..|+.+...+. ..-.|.+..+.. 
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~-   88 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRS-   88 (122)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG-
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecc-
Confidence            35778999999999987543  36788763  1111      10          023555443221 223388889988 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (122)
T d1bz7b1          89 EDTAIYYCTRGG  100 (122)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             cCceEEEeecCC
Confidence            999999997654

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.76  E-value=0.00033  Score=34.22  Aligned_cols=70  Identities=19%  Similarity=0.415  Sum_probs=45.1

Q ss_pred             eeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceec------c------------CCCCceEEEeCCCC-CeEEEEccCC
Q psy2442          20 QAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRV------S------------GTQSRYMVQEFPPG-GSLLRIEPVR   76 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~------~------------~~~~~~~~~~~~~~-~~~l~~~~~~   76 (111)
                      ..+.+|+++.|.|.+.|..  ...+.|++.  |+.+      .            .-..|+.+...+.. ...|.+..++
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~   89 (120)
T d1dlfh_          10 GLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLR   89 (120)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeecc
Confidence            3578899999999998754  336788753  2211      0            01135555543312 2348888998


Q ss_pred             CCCCCeEEEEEeee
Q psy2442          77 HARDDAVYECVAEN   90 (111)
Q Consensus        77 ~~~d~g~y~c~~~~   90 (111)
                      . +|.+.|.|....
T Consensus        90 ~-eDtAvYYCA~~~  102 (120)
T d1dlfh_          90 A-EDTGIYYCTGIY  102 (120)
T ss_dssp             G-GGCEEEEEEEEB
T ss_pred             C-CCceEEEeeEec
Confidence            8 999999997543

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.76  E-value=0.00024  Score=34.81  Aligned_cols=70  Identities=21%  Similarity=0.492  Sum_probs=45.4

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------c------------CCCCceEEEeCCCCC-eEEEEccCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------S------------GTQSRYMVQEFPPGG-SLLRIEPVR   76 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~------------~~~~~~~~~~~~~~~-~~l~~~~~~   76 (111)
                      -.+.+|+++.|.|.+.+...  ..+.|++.  |+.+      .            .-..|+.+...+... -.|.+..+.
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~   89 (122)
T d1q9rb1          10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR   89 (122)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeec
Confidence            36788999999999987543  36788853  2211      0            011355555433222 338888999


Q ss_pred             CCCCCeEEEEEeee
Q psy2442          77 HARDDAVYECVAEN   90 (111)
Q Consensus        77 ~~~d~g~y~c~~~~   90 (111)
                      . +|.+.|.|....
T Consensus        90 ~-eDTAvYYCar~~  102 (122)
T d1q9rb1          90 A-EDSATYYCARDH  102 (122)
T ss_dssp             G-GGCEEEEEEECC
T ss_pred             c-CcceEEEEEecC
Confidence            8 999999998644

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.75  E-value=0.00035  Score=34.49  Aligned_cols=70  Identities=24%  Similarity=0.427  Sum_probs=45.4

Q ss_pred             eeeecCCcEEEEEEEeccCCC--eEEEEEC--Ceec----------------cCCCCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIP--VIQWRKN--GKRV----------------SGTQSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~--~~~~----------------~~~~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.+...-  .+.|++.  |+.+                +.-..|+.+...+. ....|.+..+.. 
T Consensus        10 ~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~-   88 (128)
T d2nxyd1          10 EVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRS-   88 (128)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccc-
Confidence            467899999999999875533  5677652  1111                01124665554332 223388888987 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|....
T Consensus        89 eDTA~YYCAr~~  100 (128)
T d2nxyd1          89 DDTAVYFCAGVY  100 (128)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cCceEEEEeEEe
Confidence            999999998654

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.75  E-value=0.00012  Score=35.62  Aligned_cols=70  Identities=17%  Similarity=0.348  Sum_probs=44.4

Q ss_pred             ceeeecCCcEEEEEEEeccCC--CeEEEEEC--Cee------ccCC----------CCceEEEeCCC-CCeEEEEccCCC
Q psy2442          19 NQAVKAGGITSFYCIARGDPI--PVIQWRKN--GKR------VSGT----------QSRYMVQEFPP-GGSLLRIEPVRH   77 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~------~~~~----------~~~~~~~~~~~-~~~~l~~~~~~~   77 (111)
                      ...+.+|+++.|.|.+.|...  -.+.|++.  |+.      +...          ..|+.+...+. ....|.+.++..
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~   88 (118)
T d2jelh1           9 PELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccccc
Confidence            346789999999999987543  36788763  221      1100          13444443221 223488889998


Q ss_pred             CCCCeEEEEEee
Q psy2442          78 ARDDAVYECVAE   89 (111)
Q Consensus        78 ~~d~g~y~c~~~   89 (111)
                       +|.+.|.|...
T Consensus        89 -eDTAvYYCAr~   99 (118)
T d2jelh1          89 -EDSAIYYCARV   99 (118)
T ss_dssp             -GGCEEEEEEEE
T ss_pred             -CcceeeeEEEe
Confidence             99999999643

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.75  E-value=0.00011  Score=36.43  Aligned_cols=69  Identities=22%  Similarity=0.402  Sum_probs=44.2

Q ss_pred             eeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceec------c-CC---------CCceEEEeCCCCC-eEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRV------S-GT---------QSRYMVQEFPPGG-SLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~------~-~~---------~~~~~~~~~~~~~-~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.+..  ...+.|++.  |+.+      . ..         ..|+.+...+... -.|.+..+.. 
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~-   88 (130)
T d1rzga1          10 EVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRS-   88 (130)
T ss_dssp             EEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCC-
Confidence            4678999999999988754  336788763  2211      1 00         1345454433122 2378889988 


Q ss_pred             CCCeEEEEEee
Q psy2442          79 RDDAVYECVAE   89 (111)
Q Consensus        79 ~d~g~y~c~~~   89 (111)
                      +|.+.|.|...
T Consensus        89 eDtA~YYCAr~   99 (130)
T d1rzga1          89 EDTAVFYCASP   99 (130)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CccEEEEEEEe
Confidence            99999999753

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=0.00018  Score=32.27  Aligned_cols=57  Identities=14%  Similarity=0.226  Sum_probs=37.8

Q ss_pred             ecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          23 KAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        23 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      ..|..+.|.|.....+..  ...|.++|..+......-       ....+.+..  . .++|.|.|.-.
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~-------~~tey~V~~--~-D~SGeY~CVFl   68 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------QKTEFKVDS--D-DQWGEYSCVFL   68 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC-------SEEEEEECG--G-GCCEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCC-------CceEEEEec--C-CCCceEEEEEc
Confidence            457888999998775544  578999999886432110       111144543  3 78999999844

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.73  E-value=0.00023  Score=34.94  Aligned_cols=70  Identities=19%  Similarity=0.358  Sum_probs=45.1

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------cC----------CCCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------SG----------TQSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~~----------~~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.|...  -.+.|++.  |+.+      ..          -..|+.+...+. ..-.|.+..+.. 
T Consensus        10 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~-   88 (124)
T d1yedb1          10 ELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKS-   88 (124)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCG-
T ss_pred             ceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCC-
Confidence            46779999999999987543  36788763  2111      10          023555554331 223388889988 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|....
T Consensus        89 eDTAvYYCAR~~  100 (124)
T d1yedb1          89 EDSAVYFCTRWG  100 (124)
T ss_dssp             GGCEEEEEEECC
T ss_pred             CcceEEEecccC
Confidence            999999997543

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.73  E-value=0.00037  Score=34.12  Aligned_cols=70  Identities=20%  Similarity=0.373  Sum_probs=44.7

Q ss_pred             eeeecCCcEEEEEEEeccC--CCeEEEEEC--Ceec------cCC----------CCceEEEeCC-CCCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDP--IPVIQWRKN--GKRV------SGT----------QSRYMVQEFP-PGGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~------~~~----------~~~~~~~~~~-~~~~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|...|..  ...+.|++.  |..+      ...          ..|+.+...+ .....|.+.++.. 
T Consensus        10 ~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~-   88 (121)
T d1j05b_          10 ELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS-   88 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCc-
Confidence            4678999999999987643  336788763  2211      100          1244443322 1223388889998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (121)
T d1j05b_          89 EDTAVYYCAPFG  100 (121)
T ss_dssp             GGCEEEEEEEEB
T ss_pred             CcceEEEeEeec
Confidence            999999997654

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.72  E-value=0.00042  Score=34.45  Aligned_cols=70  Identities=23%  Similarity=0.467  Sum_probs=46.3

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------c----------CCCCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------S----------GTQSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~----------~~~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.|...  ..+.|++.  |+.+      .          .-..|+.+...+. ....|.+..+.. 
T Consensus        10 ~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~-   88 (135)
T d1ieha_          10 GLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKS-   88 (135)
T ss_dssp             CEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCS-
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCc-
Confidence            36789999999999987543  35788753  2111      1          1124565554332 223488889998 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|+|....
T Consensus        89 eDTAvYYCAr~~  100 (135)
T d1ieha_          89 EDTAVYYCAKYS  100 (135)
T ss_dssp             SSCEEEEEEEBS
T ss_pred             ccceeeEEEEec
Confidence            999999998654

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.72  E-value=0.00023  Score=35.09  Aligned_cols=69  Identities=26%  Similarity=0.473  Sum_probs=44.2

Q ss_pred             ceeeecCCcEEEEEEEeccCC--CeEEEEEC--Cee------ccC----------CCCceEEEeCCC-CCeEEEEccCCC
Q psy2442          19 NQAVKAGGITSFYCIARGDPI--PVIQWRKN--GKR------VSG----------TQSRYMVQEFPP-GGSLLRIEPVRH   77 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~------~~~----------~~~~~~~~~~~~-~~~~l~~~~~~~   77 (111)
                      ...+.+|+++.|.|.+.|...  ..+.|++.  |+.      +..          -..|+.+...+. ....|.+..+..
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~   88 (127)
T d1n0xh1           9 AEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS   88 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCC
Confidence            346789999999999987543  36778763  211      110          123555543221 223388889987


Q ss_pred             CCCCeEEEEEe
Q psy2442          78 ARDDAVYECVA   88 (111)
Q Consensus        78 ~~d~g~y~c~~   88 (111)
                       +|.+.|.|..
T Consensus        89 -eDtAvYYCAR   98 (127)
T d1n0xh1          89 -ADTAVYYCAR   98 (127)
T ss_dssp             -GGCEEEEEEE
T ss_pred             -CCceEEEEEe
Confidence             9999999974

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.72  E-value=0.00041  Score=34.26  Aligned_cols=69  Identities=22%  Similarity=0.402  Sum_probs=43.7

Q ss_pred             eeeecCCcEEEEEEEeccCC----CeEEEEEC--Ceecc---------------CCCCceEEEeCCCC-CeEEEEccCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI----PVIQWRKN--GKRVS---------------GTQSRYMVQEFPPG-GSLLRIEPVRH   77 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~----~~~~w~~~--~~~~~---------------~~~~~~~~~~~~~~-~~~l~~~~~~~   77 (111)
                      ..+++|+++.|.|.+.|...    ..+.|++.  |+.+.               .-..|+.+...+.. ...|.|.++..
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            36778999999999876432    24678742  22110               01235555543322 23488899998


Q ss_pred             CCCCeEEEEEee
Q psy2442          78 ARDDAVYECVAE   89 (111)
Q Consensus        78 ~~d~g~y~c~~~   89 (111)
                       +|++.|.|...
T Consensus        90 -eDtAvYyCAr~  100 (126)
T d1etzb1          90 -SDTATYHCARR  100 (126)
T ss_dssp             -GGCEEEEEEEE
T ss_pred             -cccceEEEEEe
Confidence             99999999753

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=0.00031  Score=32.47  Aligned_cols=30  Identities=20%  Similarity=0.411  Sum_probs=24.2

Q ss_pred             ecCCcEEEEEEEeccCCC--eEEEEECCeecc
Q psy2442          23 KAGGITSFYCIARGDPIP--VIQWRKNGKRVS   52 (111)
Q Consensus        23 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~   52 (111)
                      ..++.++|.|.+.+..+.  .+.|.++|....
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~   44 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEELI   44 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEEEC
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEEeC
Confidence            346789999999997665  679999998775

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.69  E-value=0.00045  Score=34.04  Aligned_cols=70  Identities=23%  Similarity=0.469  Sum_probs=45.2

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------c----------CCCCceEEEeCCCCC-eEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------S----------GTQSRYMVQEFPPGG-SLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~----------~~~~~~~~~~~~~~~-~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.+...  -.+.|++.  |+.+      .          .-..|+.+...+... -.|.+..+.. 
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~-   88 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRP-   88 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCc-
Confidence            35778999999999987543  35788752  2111      0          012455555433222 3388889988 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      +|.+.|.|....
T Consensus        89 eDTavYYCAR~~  100 (127)
T d2fx7h1          89 EDTAVYYCAREG  100 (127)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccceEEEEeecc
Confidence            999999997654

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.69  E-value=0.00032  Score=34.61  Aligned_cols=70  Identities=20%  Similarity=0.435  Sum_probs=44.8

Q ss_pred             eeeecCCcEEEEEEEeccC--CCeEEEEEC--Cee------ccC----------CCCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDP--IPVIQWRKN--GKR------VSG----------TQSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~------~~~----------~~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      ..+.+|+++.|.|.+.|..  ...+.|++.  |+.      +..          -..|+.+...+. ....|.+.++.. 
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~-   88 (127)
T d2fb4h1          10 GVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRP-   88 (127)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             ceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeee-
Confidence            3577899999999998754  236778763  111      110          023555554331 223388889988 


Q ss_pred             CCCeEEEEEeee
Q psy2442          79 RDDAVYECVAEN   90 (111)
Q Consensus        79 ~d~g~y~c~~~~   90 (111)
                      .|.+.|.|....
T Consensus        89 eDTA~YYCAr~~  100 (127)
T d2fb4h1          89 EDTGVYFCARDG  100 (127)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             cceeEEEEEEec
Confidence            999999997653

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.69  E-value=0.00022  Score=34.93  Aligned_cols=70  Identities=26%  Similarity=0.406  Sum_probs=45.1

Q ss_pred             eeeecCCcEEEEEEEeccCC----CeEEEEEC--Ceec------cCC---------CCceEEEeCCCC-CeEEEEccCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI----PVIQWRKN--GKRV------SGT---------QSRYMVQEFPPG-GSLLRIEPVRH   77 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~----~~~~w~~~--~~~~------~~~---------~~~~~~~~~~~~-~~~l~~~~~~~   77 (111)
                      ..+.+|+++.|.|.+.|...    ..+.|++.  |+.+      ...         ..|+.+...+.. .-.|.+..+..
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~   89 (120)
T d1ai1h1          10 AVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTN   89 (120)
T ss_dssp             SEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCG
T ss_pred             ceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeec
Confidence            46789999999999887532    25788764  2211      111         135555443312 23388889998


Q ss_pred             CCCCeEEEEEeee
Q psy2442          78 ARDDAVYECVAEN   90 (111)
Q Consensus        78 ~~d~g~y~c~~~~   90 (111)
                       +|.+.|.|....
T Consensus        90 -eDtAvYYCAr~~  101 (120)
T d1ai1h1          90 -EDTAMYYCSREN  101 (120)
T ss_dssp             -GGCEEEEEEEEE
T ss_pred             -cceeEEEEEecC
Confidence             999999997554

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00034  Score=32.75  Aligned_cols=68  Identities=12%  Similarity=0.148  Sum_probs=38.6

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCce-EEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRY-MVQEFPPGGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      .++.++|.|.+.+..+.  .+.|.++|.......... .....++.........+.. .+...|.|.+....
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~-~~~~~ytC~V~H~~   84 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPS-GEEQRYTCHVQHEG   84 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEET-TCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEc-CCCCEEEEEEEECc
Confidence            45678999999997766  578999998775321110 0111111111122223333 44557999988753

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.67  E-value=0.00011  Score=35.28  Aligned_cols=45  Identities=16%  Similarity=0.220  Sum_probs=29.6

Q ss_pred             cCCCeeE-EcCcceeeecCCcEEEEEEEeccCCC--eEEEEECCeecc
Q psy2442           8 LDPPEIT-LRPRNQAVKAGGITSFYCIARGDPIP--VIQWRKNGKRVS   52 (111)
Q Consensus         8 ~~~p~~~-~~~~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~   52 (111)
                      ..+|.+. ..+.......++.++|.|.+.+..+.  .+.|.++|....
T Consensus         6 ~~~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~   53 (107)
T d1hxmb2           6 DVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTI   53 (107)
T ss_dssp             CCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCC
T ss_pred             CCCCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEcc
Confidence            3345443 22333345567789999999987655  578999887664

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.61  E-value=0.00067  Score=33.69  Aligned_cols=71  Identities=21%  Similarity=0.404  Sum_probs=45.9

Q ss_pred             eeeecCCcEEEEEEEeccCCC--eEEEEEC--Ceec------c----------CCCCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIP--VIQWRKN--GKRV------S----------GTQSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~--~~~~------~----------~~~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      -.+.+|+++.|.|.+.+...-  .+.|++.  |+.+      .          .-..|+.+...+. ....|.+..+.. 
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~-   87 (133)
T d1rzfh1           9 EVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRS-   87 (133)
T ss_dssp             EEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCC-
Confidence            367899999999999875433  5778752  2111      0          0124555554331 223488889998 


Q ss_pred             CCCeEEEEEeeeC
Q psy2442          79 RDDAVYECVAENG   91 (111)
Q Consensus        79 ~d~g~y~c~~~~~   91 (111)
                      +|.+.|.|.....
T Consensus        88 eDtA~YYCAr~~~  100 (133)
T d1rzfh1          88 DDTAVYYCASNSI  100 (133)
T ss_dssp             GGCEEEEEEEEEC
T ss_pred             CCCEEEEeeeccC
Confidence            9999999976543

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.57  E-value=0.00035  Score=34.14  Aligned_cols=70  Identities=21%  Similarity=0.453  Sum_probs=44.5

Q ss_pred             eeeecCCcEEEEEEEeccCCC--eEEEEEC--Ceec------c---C---------CCCceEEEeCCCC-CeEEEEccCC
Q psy2442          20 QAVKAGGITSFYCIARGDPIP--VIQWRKN--GKRV------S---G---------TQSRYMVQEFPPG-GSLLRIEPVR   76 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~~--~~~w~~~--~~~~------~---~---------~~~~~~~~~~~~~-~~~l~~~~~~   76 (111)
                      ..+.+|+++.|.|.+.|....  .+.|++.  |+.+      .   .         -..|+.+...+.. .-.|.+.++.
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L~   89 (121)
T d1nfdf1          10 DLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLR   89 (121)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESCC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecccC
Confidence            467899999999999875433  5778763  2211      1   0         0124444433212 2238888999


Q ss_pred             CCCCCeEEEEEeee
Q psy2442          77 HARDDAVYECVAEN   90 (111)
Q Consensus        77 ~~~d~g~y~c~~~~   90 (111)
                      . +|.+.|.|....
T Consensus        90 ~-eDTAvYYCAr~~  102 (121)
T d1nfdf1          90 V-DDTAIYYCTRAG  102 (121)
T ss_dssp             G-GGCEECEEEEEE
T ss_pred             C-CcceEEEEeccC
Confidence            8 999999997654

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.57  E-value=0.00076  Score=33.24  Aligned_cols=69  Identities=22%  Similarity=0.386  Sum_probs=44.3

Q ss_pred             eeeecCCcEEEEEEEeccCC---CeEEEEEC--Ceec------cC---------CCCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI---PVIQWRKN--GKRV------SG---------TQSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~---~~~~w~~~--~~~~------~~---------~~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      -.+.+|+++.|.|.+.|...   ..+.|++.  |+.+      ..         -..|+.+...+. ....|.+..+.. 
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~-   88 (127)
T d3cx5j1          10 GLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTT-   88 (127)
T ss_dssp             SEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccc-
Confidence            36789999999999987643   36789763  3221      00         113444433221 223488889998 


Q ss_pred             CCCeEEEEEee
Q psy2442          79 RDDAVYECVAE   89 (111)
Q Consensus        79 ~d~g~y~c~~~   89 (111)
                      +|.+.|.|...
T Consensus        89 eDtAvYyCAr~   99 (127)
T d3cx5j1          89 EDTATYYCARS   99 (127)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEeeee
Confidence            99999999754

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00047  Score=32.66  Aligned_cols=68  Identities=12%  Similarity=0.224  Sum_probs=38.2

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceE-EEeCCCC---CeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYM-VQEFPPG---GSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~-~~~~~~~---~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      .++.++|.|.+.+..+.  .+.|.++|..+........ ....++.   .+.|.+..-.- .....|.|.+....
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w-~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAW-ERHSSYSCQVTHEG   92 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHH-TTCCEEEEEEEETT
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHh-CCCCEEEEEEEECC
Confidence            45678999999887544  6899999887643211100 1111111   12244443321 23468999998754

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.56  E-value=0.00033  Score=32.54  Aligned_cols=56  Identities=20%  Similarity=0.463  Sum_probs=38.2

Q ss_pred             eeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          21 AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      ....|.+++|.|+..+.  -.+.|.+++..+.....+           .|.+...+...++|.|.|...
T Consensus        10 VSISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~~~-----------~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          10 VSISGTSVELTCPLDSD--ENLKWEKNGQELPQKHDK-----------HLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             EEEETTEEEEECSSCCC--TTCEEEETTEEECSCCCS-----------EEEEESCCTTTSCEEEEEECS
T ss_pred             EEEeCCEEEEECCCCCC--CceEEeeccccCCCCCCc-----------EEEEccccccccCcceEEecC
Confidence            34579999999986543  369999999988765333           244444322168999999643

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.53  E-value=0.00063  Score=33.37  Aligned_cols=69  Identities=22%  Similarity=0.374  Sum_probs=42.9

Q ss_pred             eeeecCCcEEEEEEEeccCC----CeEEEEEC--Ceec-------cCC--------CCceEEEeCCC-CCeEEEEccCCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI----PVIQWRKN--GKRV-------SGT--------QSRYMVQEFPP-GGSLLRIEPVRH   77 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~----~~~~w~~~--~~~~-------~~~--------~~~~~~~~~~~-~~~~l~~~~~~~   77 (111)
                      ..+.+|++++|.|.+.|...    ..+.|++.  |..+       ...        ..|+.+...+. ..-.|.|..++.
T Consensus        10 ~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~   89 (123)
T d1r0ah1          10 GIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVET   89 (123)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccc
Confidence            46788999999999876432    25678753  2211       000        13444433221 123388889998


Q ss_pred             CCCCeEEEEEee
Q psy2442          78 ARDDAVYECVAE   89 (111)
Q Consensus        78 ~~d~g~y~c~~~   89 (111)
                       +|+..|.|...
T Consensus        90 -eDsAvYyCAr~  100 (123)
T d1r0ah1          90 -ADTAIYYCAQS  100 (123)
T ss_dssp             -GGCEEEEEEEE
T ss_pred             -ccceEEeeccc
Confidence             99999999754

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.52  E-value=0.00019  Score=34.10  Aligned_cols=29  Identities=17%  Similarity=0.346  Sum_probs=22.7

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeecc
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRVS   52 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~   52 (111)
                      .++.++|.|.+.+..+.  .+.|.++|....
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~   48 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTEL   48 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEcc
Confidence            57789999999886443  789999987643

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00041  Score=33.08  Aligned_cols=69  Identities=13%  Similarity=0.187  Sum_probs=38.2

Q ss_pred             ecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCce--EEEeCCCC---CeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          23 KAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRY--MVQEFPPG---GSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        23 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~--~~~~~~~~---~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ..++.++|.|.+.+..+.  .+.|.++|..+.......  .....++.   .+.|.+..-.- .....|.|.+....
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W-~~g~~ytC~V~H~~   92 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEW-EQKDEFICRAVHEA   92 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHH-TTGGGEEEEEECTT
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHc-CCCCEEEEEEEECC
Confidence            356789999999885543  789999988764311000  01111101   12244443221 23346999998754

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.51  E-value=0.00059  Score=33.82  Aligned_cols=69  Identities=25%  Similarity=0.556  Sum_probs=43.9

Q ss_pred             eeeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------c------------CCCCceEEEeCCC-CCeEEEEccCC
Q psy2442          20 QAVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------S------------GTQSRYMVQEFPP-GGSLLRIEPVR   76 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~------------~~~~~~~~~~~~~-~~~~l~~~~~~   76 (111)
                      -.+++|+++.|.|.+.+...  ..+.|++.  |+.+      .            .-..|+.+...+. ..-.|.+..+.
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~   89 (131)
T d3c2ah1          10 GLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLK   89 (131)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccc
Confidence            36789999999999987543  36778753  2111      0            1123554443221 22338888999


Q ss_pred             CCCCCeEEEEEee
Q psy2442          77 HARDDAVYECVAE   89 (111)
Q Consensus        77 ~~~d~g~y~c~~~   89 (111)
                      . +|.+.|.|...
T Consensus        90 ~-eDTAvYYCAR~  101 (131)
T d3c2ah1          90 T-EDTAVYSCTTD  101 (131)
T ss_dssp             G-GGCEEEEEEEE
T ss_pred             c-CCceEEEEecc
Confidence            8 99999999754

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.50  E-value=0.00065  Score=33.54  Aligned_cols=70  Identities=30%  Similarity=0.526  Sum_probs=44.3

Q ss_pred             eeeecCCcEEEEEEEeccC--CCeEEEEEC--Cee---c---c---------------CCCCceEEEeCC-CCCeEEEEc
Q psy2442          20 QAVKAGGITSFYCIARGDP--IPVIQWRKN--GKR---V---S---------------GTQSRYMVQEFP-PGGSLLRIE   73 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~---~---~---------------~~~~~~~~~~~~-~~~~~l~~~   73 (111)
                      -.+.+|+++.|.|.+.|..  .-.+.|++.  |+.   +   .               .-..|+.+...+ .....|.+.
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~   89 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMN   89 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             ceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeee
Confidence            3567899999999998754  336788863  111   0   0               011245444322 122338888


Q ss_pred             cCCCCCCCeEEEEEeee
Q psy2442          74 PVRHARDDAVYECVAEN   90 (111)
Q Consensus        74 ~~~~~~d~g~y~c~~~~   90 (111)
                      +++. +|++.|.|....
T Consensus        90 ~l~~-eDtAvYYCAr~~  105 (127)
T d1i3ua_          90 SLKP-EDTAVYYCAAKT  105 (127)
T ss_dssp             SCCG-GGCEEEEEEEES
T ss_pred             cccc-cceeEEEEEEEe
Confidence            9998 999999997543

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.45  E-value=5.8e-05  Score=36.74  Aligned_cols=69  Identities=19%  Similarity=0.372  Sum_probs=43.2

Q ss_pred             eeecCCcEEEEEEEeccCC--CeEEEEEC--Ceec------cCC---------CCceEEEeCCC-CCeEEEEccCCCCCC
Q psy2442          21 AVKAGGITSFYCIARGDPI--PVIQWRKN--GKRV------SGT---------QSRYMVQEFPP-GGSLLRIEPVRHARD   80 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~~~--~~~~w~~~--~~~~------~~~---------~~~~~~~~~~~-~~~~l~~~~~~~~~d   80 (111)
                      .+.+|+++.|.|.+.|...  -.+.|++.  |+.+      ...         ..|+.+...+. ....|.+.++.. +|
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~-eD   89 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQT-DD   89 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCC-CC
T ss_pred             eECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCC-CC
Confidence            5778999999999987543  36788763  2221      110         12333333221 122377788998 99


Q ss_pred             CeEEEEEeee
Q psy2442          81 DAVYECVAEN   90 (111)
Q Consensus        81 ~g~y~c~~~~   90 (111)
                      .+.|.|....
T Consensus        90 TAvYyCAr~~   99 (116)
T d1fn4b1          90 TGTYYCTRDL   99 (116)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEeec
Confidence            9999997543

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.0004  Score=32.89  Aligned_cols=68  Identities=18%  Similarity=0.332  Sum_probs=37.3

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCC---CeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPG---GSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      .++.++|.|.+.+..+.  .+.|.++|...............++.   .+.|.+..-.- .....|.|.+....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w-~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRW-QQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHH-HTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHc-CCCCEEEEEEEeCC
Confidence            46788999999886543  78999998865421000011111111   12244433221 22346999998754

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.33  E-value=0.0013  Score=30.59  Aligned_cols=67  Identities=16%  Similarity=0.247  Sum_probs=37.6

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCce-EEEeC-CCCCeEEEEccCCCCCCCeEEEEEeeeC
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRY-MVQEF-PPGGSLLRIEPVRHARDDAVYECVAENG   91 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~d~g~y~c~~~~~   91 (111)
                      .++.++|.|.+.+..+.  .+.|.++|.......... ..... ++.........+.. .+...|.|.+...
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~-~~~~~ytC~V~H~   84 (94)
T d1hyrc1          14 SEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQ-GEEQRFTCYMEHS   84 (94)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEET-TCGGGEEEEEEET
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcC-CCCCEEEEEEEEC
Confidence            45678999999997554  688999998775321111 11111 11111122223333 4445699998764

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.33  E-value=0.00013  Score=35.52  Aligned_cols=69  Identities=25%  Similarity=0.494  Sum_probs=44.3

Q ss_pred             eeeecCCcEEEEEEEeccC--CCeEEEEEC--Cee------cc-CC---------CCceEEEeCCC-CCeEEEEccCCCC
Q psy2442          20 QAVKAGGITSFYCIARGDP--IPVIQWRKN--GKR------VS-GT---------QSRYMVQEFPP-GGSLLRIEPVRHA   78 (111)
Q Consensus        20 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~------~~-~~---------~~~~~~~~~~~-~~~~l~~~~~~~~   78 (111)
                      -.+.+|+++.|.|.+.+..  .-.+.|++.  |+.      +. ..         ..|+.+...+. ..-.|.+..+.. 
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~-   88 (117)
T d1b2wh1          10 GVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRP-   88 (117)
T ss_dssp             CEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCG-
T ss_pred             ceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccC-
Confidence            4678999999999998743  336778763  211      11 11         13555553331 223488889998 


Q ss_pred             CCCeEEEEEee
Q psy2442          79 RDDAVYECVAE   89 (111)
Q Consensus        79 ~d~g~y~c~~~   89 (111)
                      +|.+.|.|...
T Consensus        89 eDTAvYYCAr~   99 (117)
T d1b2wh1          89 EDTAVYYCARG   99 (117)
T ss_dssp             GGCEEEECCEE
T ss_pred             CcceEEEEccc
Confidence            99999999654

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=0.0004  Score=32.85  Aligned_cols=68  Identities=13%  Similarity=0.231  Sum_probs=36.9

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCC---CeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPG---GSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ..+.++|.|.+.+..+.  .+.|.++|...............++.   .+.|.+..-.- .....|.|.+....
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w-~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNW-EAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHH-HTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHh-CCCCEEEEEEEECC
Confidence            45678999999986433  78999998876421100001111111   12244433221 12456999998753

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.31  E-value=0.00049  Score=32.57  Aligned_cols=68  Identities=15%  Similarity=0.254  Sum_probs=37.5

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCCC---eEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGG---SLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ..+.++|.|.+.+..+.  .+.|..+|...............++..   +.|.+....- .+...|.|.+....
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w-~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETW-QQGNTFTCSVLHEG   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHH-HTTCCEEEEEECTT
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHh-CCCCEEEEEEEeCC
Confidence            45678999999887654  689999988754211111111111111   1144433221 22346999998753

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.002  Score=31.16  Aligned_cols=69  Identities=10%  Similarity=0.113  Sum_probs=39.5

Q ss_pred             eeecCCcEEEEEEEeccCCC--eEE-EEEC-Ceecc--------------CCCCceEEEeC-CCCCeEEEEccCCCCCCC
Q psy2442          21 AVKAGGITSFYCIARGDPIP--VIQ-WRKN-GKRVS--------------GTQSRYMVQEF-PPGGSLLRIEPVRHARDD   81 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~~~~--~~~-w~~~-~~~~~--------------~~~~~~~~~~~-~~~~~~l~~~~~~~~~d~   81 (111)
                      .+..|++++|.|........  .+. |++. +..+.              ....++..... ......|.|.++.. +|+
T Consensus        11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~-~Ds   89 (118)
T d1yjdc1          11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYV-NQT   89 (118)
T ss_dssp             EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCG-GGC
T ss_pred             EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCc-ccC
Confidence            45678999999997654332  333 4432 11110              01123333221 11233499999998 999


Q ss_pred             eEEEEEeee
Q psy2442          82 AVYECVAEN   90 (111)
Q Consensus        82 g~y~c~~~~   90 (111)
                      +.|.|.+..
T Consensus        90 avYyCa~~~   98 (118)
T d1yjdc1          90 DIYFCKIEV   98 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEec
Confidence            999997654

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00025  Score=33.64  Aligned_cols=29  Identities=10%  Similarity=0.322  Sum_probs=23.2

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeecc
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRVS   52 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~   52 (111)
                      .++.++|.|.+.+..+.  .+.|.++|..+.
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~   49 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSPVK   49 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEECC
Confidence            46778999999986544  688999998775

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00053  Score=32.60  Aligned_cols=68  Identities=16%  Similarity=0.187  Sum_probs=37.9

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCC---CeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPG---GSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      .+.+++|.|.+.+..+.  .+.|.++|..+............++.   .+.|.+..-.- .....|.|.+.+..
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w-~~~~~ytC~V~H~~   92 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHW-LSDRTYTCQVTYQG   92 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHH-HTTCCEEEEEEETT
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHc-CCCCEEEEEEEECC
Confidence            45678899999885544  58899999887532111111111110   12244433221 12456999998764

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00058  Score=32.64  Aligned_cols=32  Identities=16%  Similarity=0.518  Sum_probs=25.2

Q ss_pred             eeecCCcEEEEEEEeccCCC--eEEEEECCeecc
Q psy2442          21 AVKAGGITSFYCIARGDPIP--VIQWRKNGKRVS   52 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~   52 (111)
                      ....++.++|.|.+.+..+.  .+.|+++|..+.
T Consensus        16 e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~   49 (108)
T d1ow0a2          16 ELALNELVTLTCLARGFSPKDVLVRWLQGSQELP   49 (108)
T ss_dssp             TTTSSSEEEEEEEEEEESSSCCEEEEEETTEECC
T ss_pred             HhccCCceEEEEEEEEeECCCEEEEEEECCeEcC
Confidence            44567899999999886544  689999988764

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.11  E-value=0.0018  Score=30.41  Aligned_cols=27  Identities=26%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             CCcEEEEEEEeccCCC--eEEEEECCeec
Q psy2442          25 GGITSFYCIARGDPIP--VIQWRKNGKRV   51 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~--~~~w~~~~~~~   51 (111)
                      ...++|.|.+.+..+.  .+.|.+++...
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~   42 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGG   42 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSS
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccc
Confidence            4578999999997766  57899886654

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.0034  Score=29.82  Aligned_cols=29  Identities=17%  Similarity=0.355  Sum_probs=22.8

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeecc
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRVS   52 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~   52 (111)
                      .++.++|.|.+.+..+.  .+.|.++|..+.
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~   49 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQ   49 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEcc
Confidence            46678999999886544  789999988764

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.0022  Score=30.53  Aligned_cols=29  Identities=21%  Similarity=0.352  Sum_probs=22.7

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeecc
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRVS   52 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~   52 (111)
                      ..+.++|.|.+.+..+.  .+.|..+|....
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~   49 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQS   49 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECC
Confidence            46788999999886443  789999988764

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.0035  Score=29.27  Aligned_cols=67  Identities=10%  Similarity=0.055  Sum_probs=43.7

Q ss_pred             ceeeecCCcEEEEEEEeccCCCeE-EEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeC
Q psy2442          19 NQAVKAGGITSFYCIARGDPIPVI-QWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENG   91 (111)
Q Consensus        19 ~~~~~~g~~~~l~c~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~   91 (111)
                      .+.+.+|+.+.+.|.+.. |...+ .|...+..+......+...    ...-+.+..... .+.|.|.|.+...
T Consensus        14 ~V~v~eg~~~vIPC~vT~-P~~~VtL~~~~~~~~~p~g~~v~~D----pk~Gf~I~~~~~-~~~g~y~C~a~~~   81 (95)
T d1fltx_          14 IIHMTEGRELVIPCRVTS-PNITVTLKKFPLDTLIPDGKRIIWD----SRKGFIISNATY-KEIGLLTCEATVN   81 (95)
T ss_dssp             EEEECTTSCEEECCCBSC-TTSCCEEEETTTEEECCCSSSEEEE----TTTEEEESSCCG-GGCEEEEEEEEET
T ss_pred             EEEEeCCCCEEEEccCCC-CCceeEEEeccCCccCCCCCEEEEC----CCCCEEEeCCCc-ccCeEEEEEEEEC
Confidence            366788999999998875 34444 3444555543322233222    222288888888 8999999998654

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0013  Score=30.14  Aligned_cols=65  Identities=17%  Similarity=0.354  Sum_probs=39.5

Q ss_pred             eeecCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          21 AVKAGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      ....|.++.|.|+..  ....+.|.+++..+........+..   ....|.+...+...++|.|.|.+..
T Consensus         6 VsISGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~~~---~~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           6 VSISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGS---DEDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EEEETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTEEE---ETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             EEEeCCEEEEECCCC--CCCceeeeeccccccCCCccccccc---ccceEEecccCccccCceEEEEcCC
Confidence            345799999999643  3347999999988765322110110   1223556554321478999998743

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0019  Score=30.53  Aligned_cols=38  Identities=11%  Similarity=0.208  Sum_probs=25.3

Q ss_pred             EcCcceeeecCCcEEEEEEEeccCCC----eEEEEECCeecc
Q psy2442          15 LRPRNQAVKAGGITSFYCIARGDPIP----VIQWRKNGKRVS   52 (111)
Q Consensus        15 ~~~~~~~~~~g~~~~l~c~~~~~~~~----~~~w~~~~~~~~   52 (111)
                      ++|....+..++.++|.|.+.+..+.    .+.|.+++....
T Consensus         6 ~pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~   47 (103)
T d1fp5a1           6 SRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPV   47 (103)
T ss_dssp             ECCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCC
T ss_pred             eCcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceec
Confidence            34443345567888999999885443    456777776653

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.69  E-value=0.0063  Score=29.80  Aligned_cols=43  Identities=28%  Similarity=0.587  Sum_probs=28.6

Q ss_pred             CCeeE-EcCcceeeecCCcEEEEEEEeccCCC--eEEEEECCeecc
Q psy2442          10 PPEIT-LRPRNQAVKAGGITSFYCIARGDPIP--VIQWRKNGKRVS   52 (111)
Q Consensus        10 ~p~~~-~~~~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~   52 (111)
                      +|.+. +.+.......++.++|.|.+.+..+.  .+.|+++|..+.
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~   49 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH   49 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEcc
Confidence            44443 23333334457788999999886544  688999988764

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.64  E-value=0.00063  Score=32.33  Aligned_cols=29  Identities=14%  Similarity=0.415  Sum_probs=22.9

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeecc
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRVS   52 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~   52 (111)
                      .++.++|.|.+.+..+.  .+.|.++|..+.
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~   49 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATIN   49 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECC
Confidence            45678899999886543  789999998775

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.011  Score=27.94  Aligned_cols=73  Identities=10%  Similarity=0.085  Sum_probs=36.9

Q ss_pred             eecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCC---CeEEEEccCCCC-CCCeEEEEEeeeCCCc
Q psy2442          22 VKAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPG---GSLLRIEPVRHA-RDDAVYECVAENGVGD   94 (111)
Q Consensus        22 ~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~-~d~g~y~c~~~~~~~~   94 (111)
                      ....+.++|.|.+.+..+.  .+.|..++...............++.   .+.|.+...+-. .....|.|.+....+.
T Consensus        18 ~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~   96 (105)
T d1dn0b2          18 PSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN   96 (105)
T ss_dssp             ---CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             cCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCC
Confidence            3446788999999986543  78999887655321000000001100   122444432210 1224799999886544

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.0027  Score=29.91  Aligned_cols=65  Identities=12%  Similarity=0.150  Sum_probs=36.1

Q ss_pred             ecCCcEEEEEEEeccCCC--eEEEEECCeeccCC-CCceEEEeCCC---CCeEEEEccCCCCCCCeEEEEEeeeCC
Q psy2442          23 KAGGITSFYCIARGDPIP--VIQWRKNGKRVSGT-QSRYMVQEFPP---GGSLLRIEPVRHARDDAVYECVAENGV   92 (111)
Q Consensus        23 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~-~~~~~~~~~~~---~~~~l~~~~~~~~~d~g~y~c~~~~~~   92 (111)
                      ..++.++|.|.+.+..+.  .+.|..++...... ....  .. ++   ....|.+..-.  .+.+.|.|.+....
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~--~~-~g~~s~~S~L~v~~~~--w~~~~ytC~V~H~~   88 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAV--LQ-SGLYTLSSNTTVASGT--WPSASVTCLVAHPK   88 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCE--EE-TTEEEEEEEEEEETTT--TTTSCCEEEEEEGG
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeee--cC-CCCEEEEEEEEEchhh--cCCCeEEEEEEeCC
Confidence            457889999999885443  68897665432110 0000  00 10   11225554333  24568999998754

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.35  E-value=0.015  Score=28.08  Aligned_cols=69  Identities=14%  Similarity=0.245  Sum_probs=38.2

Q ss_pred             ecCCcEEEEEEEeccCC----CeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCC---CCeEEEEEeeeCC
Q psy2442          23 KAGGITSFYCIARGDPI----PVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHAR---DDAVYECVAENGV   92 (111)
Q Consensus        23 ~~g~~~~l~c~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---d~g~y~c~~~~~~   92 (111)
                      ..++.++|.|.+.+..+    ..+.|..++...............++.........+.. .   ....|.|.+.+..
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~-~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQH-QDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCH-HHHHTTCEEEEEEECTT
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeH-HHhCCCCeEEEEEEECC
Confidence            45778899999988533    36789999987753221111122121111122223332 2   2357999998753

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.31  E-value=0.0056  Score=28.82  Aligned_cols=29  Identities=14%  Similarity=0.215  Sum_probs=21.9

Q ss_pred             cCCcEEEEEEEeccCC----CeEEEEECCeecc
Q psy2442          24 AGGITSFYCIARGDPI----PVIQWRKNGKRVS   52 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~----~~~~w~~~~~~~~   52 (111)
                      .+.+++|.|.+.+..+    ..+.|.++|....
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~   47 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVH   47 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEEC
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCcccc
Confidence            4677899999987543    3678999888764

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.15  E-value=0.0049  Score=29.02  Aligned_cols=67  Identities=9%  Similarity=0.164  Sum_probs=33.3

Q ss_pred             ecCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCC---CCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          23 KAGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPP---GGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        23 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      ..++.++|.|.+.+..+.  .+.|..++......  .......++   ..+.|.+....  .+.+.|.|.+.+...
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~--~~~~~~~~g~ys~~S~L~v~~~~--w~~~~ytC~V~H~~~   89 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVH--TFPAVLQSDLYTLSSSVTVTSST--WPSQSITCNVAHPAS   89 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEE--ECCCEEETTEEEEEEEEEECTTT--TTTSCCEEEEEEGGG
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeE--ecccccCCCCEEEEEEEEEehhH--cCCceEEEEEEECCC
Confidence            356789999999986544  68896554322100  000000110   11224444433  234679999987543

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.01  Score=27.92  Aligned_cols=31  Identities=13%  Similarity=0.266  Sum_probs=22.8

Q ss_pred             eecCCcEEEEEEEeccCC----CeEEEEECCeecc
Q psy2442          22 VKAGGITSFYCIARGDPI----PVIQWRKNGKRVS   52 (111)
Q Consensus        22 ~~~g~~~~l~c~~~~~~~----~~~~w~~~~~~~~   52 (111)
                      ...++.++|.|.+.+..+    ..+.|.+++....
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~   49 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVH   49 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEEC
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECC
Confidence            345788999999987543    3567888888764

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.015  Score=27.28  Aligned_cols=26  Identities=15%  Similarity=0.483  Sum_probs=19.4

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCe
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGK   49 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~   49 (111)
                      .++.++|.|.+.+..+.  .+.|..++.
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~   46 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGAL   46 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCC
Confidence            46789999999886544  688976554

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.15  E-value=0.011  Score=28.23  Aligned_cols=66  Identities=12%  Similarity=0.097  Sum_probs=34.5

Q ss_pred             cCCcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCC---CeEEEEEeeeCC
Q psy2442          24 AGGITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARD---DAVYECVAENGV   92 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d---~g~y~c~~~~~~   92 (111)
                      .++.++|.|.+.+..+.  .+.|..++.....  ........++.........+.. .+   ...|.|.+....
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~--~~~~~~~~dgtys~~S~L~v~~-~~W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEPSDYK--NTPPVFDTDGSFFLYSRLKVDT-DAWNNGESFTCSVMHEA   96 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCTTTEE--EEEEECCSSCCCEEEEEECCCS-SCCHHHHCCEEEEEETT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCCCCcE--EcccEECCCCcEEEEEEEEECH-HHhCCCCEEEEEEEeCC
Confidence            35678999999986544  6889766532110  0001111111112223334443 43   346999998854

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.97  E-value=0.06  Score=25.05  Aligned_cols=69  Identities=12%  Similarity=0.161  Sum_probs=35.1

Q ss_pred             ecCCcEEEEEEEeccC-CC--eEEEEECCeeccCCCCceEEEeCCC---CCeEEEEccCCCCCCCeEEEEEeeeCCC
Q psy2442          23 KAGGITSFYCIARGDP-IP--VIQWRKNGKRVSGTQSRYMVQEFPP---GGSLLRIEPVRHARDDAVYECVAENGVG   93 (111)
Q Consensus        23 ~~g~~~~l~c~~~~~~-~~--~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~d~g~y~c~~~~~~~   93 (111)
                      ..++.++|.|.+.+.. .-  .+.|.+++.......... ....++   ..+.|.+....- .....|.|.+.....
T Consensus        17 ~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~-~~~~~gtys~~S~L~v~~~~W-~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          17 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPP-ALASGGRYTMSNQLTLPAVEC-PEGESVKCSVQHDSN   91 (102)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCC-EECSSSCEEEEEEEEECGGGS-CTTCEEEEEEEETTS
T ss_pred             cCCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeee-EecCCCCEEEEEEEEEeHHHc-cCCCEEEEEEEECCC
Confidence            3467899999999964 32  345666554432100000 011110   112255544432 234579999987543

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.018  Score=26.03  Aligned_cols=50  Identities=20%  Similarity=0.321  Sum_probs=28.4

Q ss_pred             cCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442          24 AGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      .|..+.|.|...-  .-.+.|.+++..-...           .++++.+.--.. .+.|.|.|.
T Consensus        20 ~~~~V~L~C~t~e--E~~I~W~kd~~se~~~-----------~GntltV~VkE~-~~aGnYTCh   69 (87)
T d3d85d1          20 PGEMVVLTCDTPE--EDGITWTLDQSSEVLG-----------SGKTLTIQVKEF-GDAGQYTCH   69 (87)
T ss_dssp             CCEEEEEECSSSC--CSSCEEEETTCCCCCE-----------ESSEEEEEECSG-GGCEEEEEE
T ss_pred             CccEEEEecCCCc--ccccEEeeCCcccccc-----------CCCEEEEEEEec-cCCcceeEe
Confidence            4567888884322  2368999975541111           222233332233 688999997

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=94.48  E-value=0.076  Score=23.99  Aligned_cols=61  Identities=10%  Similarity=0.033  Sum_probs=34.0

Q ss_pred             CcEEEEEEEeccCCC--eEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeeeC
Q psy2442          26 GITSFYCIARGDPIP--VIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAENG   91 (111)
Q Consensus        26 ~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~~   91 (111)
                      +..+|.|.+.+..+.  .+.|..+|......  .......++.-..+.+..... .  ..|.|.+...
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~--~~~~~~~~gtys~~s~~~~~~-~--~~yTC~V~H~   76 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFD--PAIVISPSGKYNAVKLGKYED-S--NSVTCSVQHD   76 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECC--CEEEECTTSSEEEEEEEEETT-T--TTCEEEEEET
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCc--EEeeeccCCcEEEEEEEecCC-C--CEEEEEEEEC
Confidence            445899999987655  57899888765432  111111121111123333332 3  3599998764

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.34  E-value=0.21  Score=22.50  Aligned_cols=52  Identities=17%  Similarity=0.328  Sum_probs=31.1

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      ..++.|.|..   ....+.|++++..+.....         ...++.+-.... ...|.|.|...
T Consensus        22 dGsV~L~Cn~---~~k~i~W~kdg~~i~~~~~---------~~ktlnLG~~~~-DPRGiY~C~g~   73 (86)
T d1jbja1          22 DGSVLLTCGL---TDKTIKWLKDGSIISPLNA---------TKNTWNLGNNAK-DPRGTYQCQGA   73 (86)
T ss_dssp             SCEEEEECSS---SCSCEEEEETTEECCCSSC---------CSSCCEEEETTS-CCEEEEEEEES
T ss_pred             CCeEEEEeCC---CCcEEEEecCCceeccccc---------ccceeecCCccc-CCCcceEcCCC
Confidence            4578899943   3348999999988753211         111133333333 55799999643

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.62  E-value=0.043  Score=25.52  Aligned_cols=30  Identities=13%  Similarity=0.337  Sum_probs=21.8

Q ss_pred             eeecCCcEEEEEEEecc-CC--CeEEEEECCee
Q psy2442          21 AVKAGGITSFYCIARGD-PI--PVIQWRKNGKR   50 (111)
Q Consensus        21 ~~~~g~~~~l~c~~~~~-~~--~~~~w~~~~~~   50 (111)
                      .+..++.++|.|.+.+. .+  ..+.|..++..
T Consensus        14 ~~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~   46 (101)
T d1ow0a1          14 DLLLGSEANLTCTLTGLRDASGVTFTWTPSSGK   46 (101)
T ss_dssp             HHHHCSSCCCEEEETTCCSCCCCCCCBSSCSSC
T ss_pred             HHccCCCeEEEEEEeCCCCCcceEEEEEECCce
Confidence            35568899999999885 23  26899876653

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.49  E-value=0.44  Score=21.20  Aligned_cols=54  Identities=19%  Similarity=0.328  Sum_probs=31.1

Q ss_pred             cCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEeee
Q psy2442          24 AGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAEN   90 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~~   90 (111)
                      ...++.|.|..   ....+.|++++..+.....         ...++-+-.... ...|.|.|....
T Consensus        16 ~dg~V~L~Cn~---~~k~i~W~kdg~~i~~~~~---------~~ktlnLG~~~~-DPRG~Y~C~~~~   69 (81)
T d1sy6a1          16 EDGSVLLTCDA---EAKNITWFKDGKMIGFLTE---------DKKKWNLGSNAK-DPRGMYQCKGSQ   69 (81)
T ss_dssp             SSSEEEEEECS---CSSEEEEEETTEEEEEEES---------SCCCEEEEEGGG-CCEEEEEEESSS
T ss_pred             cCCeEEEEeCC---CCcEEEEecCCeEeecccC---------CcceeecCCccc-CCCcceEcCCCC
Confidence            34578899943   3448999999886531100         111133333333 557999997543

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.06  E-value=0.9  Score=19.77  Aligned_cols=48  Identities=13%  Similarity=0.181  Sum_probs=26.5

Q ss_pred             cCCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEEee
Q psy2442          24 AGGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECVAE   89 (111)
Q Consensus        24 ~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~~~   89 (111)
                      ..+.+.|.|.      -.+.|++++..+...+.           ..+-+-.... ...|.|.|...
T Consensus         8 ~e~~V~L~Cn------~si~W~k~~~~~~~~~~-----------k~lnLG~~~~-DPRG~Y~C~~~   55 (74)
T d1xiwb_           8 LEDRVFVNCN------TSITWVEGTVGTLLSDI-----------TRLDLGKRIL-DPRGIYRCNGT   55 (74)
T ss_dssp             ETTEEEEECS------SCEEEEEECCCEEEGGG-----------TEEEEEEGGG-CCEEEEEEC--
T ss_pred             cCCeEEEEcc------CeeEEecCCcccccCCc-----------cEeecCCccc-CCCcceEeCCc
Confidence            3457888993      36899987553322111           1133333333 55799999754

>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=82.56  E-value=0.74  Score=19.59  Aligned_cols=45  Identities=11%  Similarity=0.181  Sum_probs=25.5

Q ss_pred             CCcEEEEEEEeccCCCeEEEEECCeeccCCCCceEEEeCCCCCeEEEEccCCCCCCCeEEEEE
Q psy2442          25 GGITSFYCIARGDPIPVIQWRKNGKRVSGTQSRYMVQEFPPGGSLLRIEPVRHARDDAVYECV   87 (111)
Q Consensus        25 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~g~y~c~   87 (111)
                      .+.+.|.|.      -.+.|++++..+.....+           ++.+-.... ...|.|.|.
T Consensus         8 edkV~L~Cn------~sI~w~k~~~~~~~~~~k-----------tlnLG~~~~-DPRGiY~C~   52 (66)
T d1xmwa2           8 EDKVILKCN------SSITLLQGTAGQEVSDNK-----------TLNLGKRIE-DPRGMYQCG   52 (66)
T ss_dssp             TTEEEEECS------SSCEEEEECCCCBSSSSS-----------BBCCBCSTT-CCEEEEECC
T ss_pred             CceEEEEcc------CeEEEccCccccccCCCc-----------EEeCCCccc-CCCcceECC
Confidence            457888993      257899886544322111           122222222 457999994