Psyllid ID: psy2448

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MPPQELKSRNSGLQISFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINSYFPEDIVRYYSPRCTDHLLAKVDQFTPQVSLPLITCAPDTPSDMSLGDEEGNWSSPISHVISS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHccccHHHHcccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEcc
Coil and Loop (DISEMBL)
mppqelksrnsglqisflsnvsfSFVDlllyesppeilLPALKQLCKIFPVDLKARRVFVSagglkrvqalkppagseLCEAVTMINSYfpedivryysprctdhllakvdqftpqvslplitcapdtpsdmslgdeegnwsspishviss
Flexible Loop (DISEMBL)
mppqelksrnsglqisFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSagglkrvqalkppagseLCEAVTMINSYFPEDIVRYYSPRCTDHLLAKVDQFTPQVSLPLITCAPDTPSDMSLgdeegnwsspishviss
Low Complexity Region (SEG)
MPPQELKSRNSGLQISFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINSYFPEDIVRYYSPRCTDHLLAKVDQFTPQVSLPLITCAPDTPSDMSLGDEEGNWSSPISHVISS
Disordered region (IsUnstruct)
************LQISFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINSYFPEDIVRYYSPRCTDHLLAKVDQFTPQVSLPLITCA**************************
Disordered Region (DISOPRED)
********RNSGLQISFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQAL*****SELCEAVTMINSYFPEDIVRYYSPRCTDHLLAKVDQFTPQVSLPL******************************
Disordered Region (DISEMBL)
**********SGLQISFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINSYFPEDIVRYYSPRCTDHLLAKVDQFTPQVSLPLITCAPDTPSDMSLGDEEGNWSSPISHVISS
Disordered Region (DISPRO)
MPPQELKSRNSGLQISFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINSYFPEDIVRYYSPRCTDHLLAKVDQFTPQVSLPLIT****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPPQELKSRNSGLQISFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINSYFPEDIVRYYSPRCTDHLLAKVDQFTPQVSLPLITCAPDTPSDMSLGDEEGNWSSPISHVISS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
O75602	509	Sperm-associated antigen	yes	N/A	0.569	0.168	0.523	2e-19
Q9JLI7	507	Sperm-associated antigen	yes	N/A	0.569	0.169	0.511	5e-19

>sp|O75602|SPAG6_HUMAN Sperm-associated antigen 6 OS=Homo sapiens GN=SPAG6 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 60/86 (69%)

Query: 30  LYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINSY 89
           LY++PP IL   + Q  K+ P D KARR+FV++GGLK+VQ +K   GS L E +  INS 
Sbjct: 421 LYDAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYINSINSC 480

Query: 90  FPEDIVRYYSPRCTDHLLAKVDQFTP 115
           +PE+IVRYYSP  +D LL +VD + P
Sbjct: 481 YPEEIVRYYSPGYSDTLLQRVDSYQP 506

Important for structural integrity of the central apparatus in the sperm tail and for flagellar motility.
Homo sapiens (taxid: 9606)

>sp|Q9JLI7|SPAG6_MOUSE Sperm-associated antigen 6 OS=Mus musculus GN=Spag6 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 60/86 (69%)

Query: 30  LYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINSY 89
           LY++PP IL   + Q  K+ P D KARR+FV++GGLK+VQ +K   GS L E +  IN+ 
Sbjct: 421 LYDAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYINSINNC 480

Query: 90  FPEDIVRYYSPRCTDHLLAKVDQFTP 115
           +PE+IVRYYSP  +D LL +VD + P
Sbjct: 481 YPEEIVRYYSPGYSDTLLQRVDSYQP 506

Important for structural integrity of the central apparatus in the sperm tail and for flagellar motility.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
91085459	540	PREDICTED: similar to sperm associated a	0.589	0.164	0.539	1e-18
383854770	534	PREDICTED: sperm-associated antigen 6-li	0.907	0.256	0.401	2e-18
328786124	535	PREDICTED: sperm-associated antigen 6-li	0.748	0.211	0.438	5e-18
156548324	537	PREDICTED: sperm-associated antigen 6-li	0.708	0.199	0.456	8e-18
156387600	508	predicted protein [Nematostella vectensi	0.576	0.171	0.505	1e-17
119606551	122	sperm associated antigen 6, isoform CRA_	0.576	0.713	0.517	1e-17
306415661	235	sperm associated antigen 6 [Homo sapiens	0.576	0.370	0.517	1e-17
6912678	509	sperm-associated antigen 6 isoform 1 [Ho	0.569	0.168	0.523	1e-17
395827232	509	PREDICTED: sperm-associated antigen 6 [O	0.589	0.174	0.505	1e-17
410963288	486	PREDICTED: sperm-associated antigen 6 is	0.569	0.176	0.523	1e-17

>gi|91085459|ref|XP_969636.1| PREDICTED: similar to sperm associated antigen 6 [Tribolium castaneum]

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/89 (53%), Positives = 65/89 (73%)

Query: 29  LLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINS 88
           LLY++PP IL   L Q  KI P D KARR+FV+ GGLKR+Q ++   G+ L E +++INS
Sbjct: 420 LLYDAPPNILKYVLGQYSKILPHDPKARRLFVTTGGLKRMQHIEAQPGTTLMEYISIINS 479

Query: 89  YFPEDIVRYYSPRCTDHLLAKVDQFTPQV 117
            FPE+IVRYYSP   + LL KV+Q++PQ+
Sbjct: 480 CFPEEIVRYYSPGYPETLLDKVEQYSPQM 508

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854770|ref|XP_003702893.1| PREDICTED: sperm-associated antigen 6-like [Megachile rotundata]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 85/142 (59%), Gaps = 5/142 (3%)

Query: 3   PQELKSR-NSGLQISFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVS 61
           P++LK++ N+ L+      +    ++ LL ++PP IL   L Q  KI P D +ARR+FV+
Sbjct: 393 PEDLKAKCNTTLKQVLQRCMYIESLEPLLEDAPPNILKCILGQFSKILPHDARARRLFVT 452

Query: 62  AGGLKRVQALKPPAGSELCEAVTMINSYFPEDIVRYYSPRCTDHLLAKVDQFTPQV---- 117
           +GGLK+VQ ++   GS L E + +IN  FPE+IVRYYSP   D LL  V+Q+ P+     
Sbjct: 453 SGGLKKVQEIQAEPGSMLLEYIQIINCCFPEEIVRYYSPGYPDSLLEAVEQYQPRCASLF 512

Query: 118 SLPLITCAPDTPSDMSLGDEEG 139
           +   ++   DT S +S   EEG
Sbjct: 513 AFEHLSSESDTKSSLSSQVEEG 534

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328786124|ref|XP_394968.3| PREDICTED: sperm-associated antigen 6-like isoform 1 [Apis mellifera]

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 74/114 (64%), Gaps = 1/114 (0%)

Query: 4   QELKSR-NSGLQISFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSA 62
           ++LK++ N+ L+      +    ++ LLY+SPP IL   L Q  KI P D +ARR+FV++
Sbjct: 394 EDLKAKCNTALKQILQKCMYIEALEALLYDSPPNILKYVLGQFSKILPHDARARRLFVTS 453

Query: 63  GGLKRVQALKPPAGSELCEAVTMINSYFPEDIVRYYSPRCTDHLLAKVDQFTPQ 116
           GGLK+VQ ++   GS L E V +IN  FPE+I+RYYSP   + LL  V+Q+ P+
Sbjct: 454 GGLKKVQEIQTDPGSTLFEYVQIINCCFPEEIIRYYSPGYPNTLLEAVEQYQPK 507

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548324|ref|XP_001603009.1| PREDICTED: sperm-associated antigen 6-like [Nasonia vitripennis]

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 68/114 (59%), Gaps = 7/114 (6%)

Query: 29  LLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINS 88
           LL+++PP IL   L Q  KI P D +ARR+FV+ GGLK+VQ ++    S L E +T+IN 
Sbjct: 420 LLHDAPPNILKYILGQFSKILPNDARARRLFVTTGGLKKVQEIQADPSSTLSEYITIINC 479

Query: 89  YFPEDIVRYYSPRCTDHLLAKVDQFTPQVSLPLITCAPDTPSDMSLGDEEGNWS 142
            FPE+IVRYYSP   D LL  V+Q+ P  S     C        SL +E+ N S
Sbjct: 480 CFPEEIVRYYSPGYPDSLLEAVEQYQPNCSFNESKCE-------SLSNEQSNSS 526

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156387600|ref|XP_001634291.1| predicted protein [Nematostella vectensis] gi|156221372|gb|EDO42228.1| predicted protein [Nematostella vectensis]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 62/87 (71%)

Query: 29  LLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINS 88
           LL+++PP IL   + Q  K+ P D KARR+FV++GGLK+VQ +K   GS L E +  IN+
Sbjct: 420 LLHDAPPNILKHVVGQFAKVLPHDAKARRLFVTSGGLKKVQEIKAEPGSALHEYINTINN 479

Query: 89  YFPEDIVRYYSPRCTDHLLAKVDQFTP 115
            +PE+IVRYYSP  +D LL +V+Q+ P
Sbjct: 480 CYPEEIVRYYSPGYSDRLLERVEQYQP 506

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|119606551|gb|EAW86145.1| sperm associated antigen 6, isoform CRA_c [Homo sapiens]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 60/87 (68%)

Query: 29  LLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINS 88
            LY++PP IL   + Q  K+ P D KARR+FV++GGLK+VQ +K   GS L E +  INS
Sbjct: 33  FLYDAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYINSINS 92

Query: 89  YFPEDIVRYYSPRCTDHLLAKVDQFTP 115
            +PE+IVRYYSP  +D LL +VD + P
Sbjct: 93  CYPEEIVRYYSPGYSDTLLQRVDSYQP 119

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|306415661|gb|ADM86748.1| sperm associated antigen 6 [Homo sapiens]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 60/87 (68%)

Query: 29  LLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINS 88
            LY++PP IL   + Q  K+ P D KARR+FV++GGLK+VQ +K   GS L E +  INS
Sbjct: 146 FLYDAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYINSINS 205

Query: 89  YFPEDIVRYYSPRCTDHLLAKVDQFTP 115
            +PE+IVRYYSP  +D LL +VD + P
Sbjct: 206 CYPEEIVRYYSPGYSDTLLQRVDSYQP 232

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|6912678|ref|NP_036575.1| sperm-associated antigen 6 isoform 1 [Homo sapiens] gi|350534826|ref|NP_001233340.1| sperm-associated antigen 6 [Pan troglodytes] gi|397501530|ref|XP_003821436.1| PREDICTED: sperm-associated antigen 6 isoform 1 [Pan paniscus] gi|426364179|ref|XP_004049197.1| PREDICTED: sperm-associated antigen 6 isoform 1 [Gorilla gorilla gorilla] gi|62901067|sp|O75602.1|SPAG6_HUMAN RecName: Full=Sperm-associated antigen 6; AltName: Full=Protein PF16 homolog; AltName: Full=Repro-SA-1; AltName: Full=Sperm flagellar protein gi|3449383|gb|AAC32590.1| sperm flagellar protein Repro-SA-1 [Homo sapiens] gi|5262578|emb|CAB45730.1| hypothetical protein [Homo sapiens] gi|117646874|emb|CAL37552.1| hypothetical protein [synthetic construct] gi|119606552|gb|EAW86146.1| sperm associated antigen 6, isoform CRA_d [Homo sapiens] gi|158260829|dbj|BAF82592.1| unnamed protein product [Homo sapiens] gi|261857730|dbj|BAI45387.1| sperm associated antigen 6 [synthetic construct] gi|343959922|dbj|BAK63818.1| sperm-associated antigen 6 [Pan troglodytes]

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 60/86 (69%)

Query: 30  LYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINSY 89
           LY++PP IL   + Q  K+ P D KARR+FV++GGLK+VQ +K   GS L E +  INS 
Sbjct: 421 LYDAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYINSINSC 480

Query: 90  FPEDIVRYYSPRCTDHLLAKVDQFTP 115
           +PE+IVRYYSP  +D LL +VD + P
Sbjct: 481 YPEEIVRYYSPGYSDTLLQRVDSYQP 506

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395827232|ref|XP_003786809.1| PREDICTED: sperm-associated antigen 6 [Otolemur garnettii]

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 62/89 (69%)

Query: 30  LYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINSY 89
           LY++PP IL   + Q  K+ P D KARR+FV++GGLK+VQ +K   GS L E +  INS 
Sbjct: 421 LYDAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYINSINSC 480

Query: 90  FPEDIVRYYSPRCTDHLLAKVDQFTPQVS 118
           +PE+IVRYYSP  +D LL +VD + P ++
Sbjct: 481 YPEEIVRYYSPGYSDTLLQRVDSYQPLIN 509

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410963288|ref|XP_003988197.1| PREDICTED: sperm-associated antigen 6 isoform 2 [Felis catus]

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 60/86 (69%)

Query: 30  LYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINSY 89
           LY++PP IL   + Q  K+ P D KARR+FV++GGLK+VQ +K   GS L E +  INS 
Sbjct: 398 LYDAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAGPGSLLQEYINSINSC 457

Query: 90  FPEDIVRYYSPRCTDHLLAKVDQFTP 115
           +PE+IVRYYSP  +D LL +VD + P
Sbjct: 458 YPEEIVRYYSPGYSDALLQRVDSYQP 483

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
UNIPROTKB|O75602	509	SPAG6 "Sperm-associated antige	0.569	0.168	0.523	3.9e-18
UNIPROTKB|C1JEX7	509	SPAG6 "Sperm associated antige	0.589	0.174	0.494	5e-18
RGD|1310892	507	Spag6 "sperm associated antige	0.576	0.171	0.505	6.4e-18
MGI|MGI:1354388	507	Spag6 "sperm associated antige	0.569	0.169	0.511	8.2e-18
UNIPROTKB|Q32L54	509	SPAG6 "Sperm associated antige	0.569	0.168	0.5	2.3e-17
UNIPROTKB|E1C6P7	508	SPAG6 "Uncharacterized protein	0.576	0.171	0.459	2.1e-16

UNIPROTKB|O75602 SPAG6 "Sperm-associated antigen 6" [Homo sapiens (taxid:9606)]

 Score = 227 (85.0 bits), Expect = 3.9e-18, P = 3.9e-18
 Identities = 45/86 (52%), Positives = 60/86 (69%)

Query:    30 LYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINSY 89
             LY++PP IL   + Q  K+ P D KARR+FV++GGLK+VQ +K   GS L E +  INS 
Sbjct:   421 LYDAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYINSINSC 480

Query:    90 FPEDIVRYYSPRCTDHLLAKVDQFTP 115
             +PE+IVRYYSP  +D LL +VD + P
Sbjct:   481 YPEEIVRYYSPGYSDTLLQRVDSYQP 506

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0030030 "cell projection organization" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0005930 "axoneme" evidence=TAS

GO:0007286 "spermatid development" evidence=TAS

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|C1JEX7 SPAG6 "Sperm associated antigen 6" [Sus scrofa (taxid:9823)]

 Score = 226 (84.6 bits), Expect = 5.0e-18, P = 5.0e-18
 Identities = 44/89 (49%), Positives = 62/89 (69%)

Query:    30 LYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINSY 89
             LY++PP IL   + Q  K+ P D KARR+FV++GGLK+VQ +K   GS L E +  IN+ 
Sbjct:   421 LYDAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYINSINNC 480

Query:    90 FPEDIVRYYSPRCTDHLLAKVDQFTPQVS 118
             +PE+IVRYYSP  +D LL +VD + P ++
Sbjct:   481 YPEEIVRYYSPGYSDTLLQRVDSYQPLIN 509

GO:0030317 "sperm motility" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

RGD|1310892 Spag6 "sperm associated antigen 6" [Rattus norvegicus (taxid:10116)]

 Score = 225 (84.3 bits), Expect = 6.4e-18, P = 6.4e-18
 Identities = 44/87 (50%), Positives = 61/87 (70%)

Query:    30 LYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINSY 89
             LY++PP IL   + Q  K+ P D KARR+FV++GGLK+VQ +K   GS L E +  IN+ 
Sbjct:   421 LYDAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYINSINNC 480

Query:    90 FPEDIVRYYSPRCTDHLLAKVDQFTPQ 116
             +PE+IVRYYSP  ++ LL +VD + PQ
Sbjct:   481 YPEEIVRYYSPGYSETLLQRVDSYQPQ 507

GO:0007283 "spermatogenesis" evidence=ISO

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0030317 "sperm motility" evidence=ISO

MGI|MGI:1354388 Spag6 "sperm associated antigen 6" [Mus musculus (taxid:10090)]

 Score = 224 (83.9 bits), Expect = 8.2e-18, P = 8.2e-18
 Identities = 44/86 (51%), Positives = 60/86 (69%)

Query:    30 LYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINSY 89
             LY++PP IL   + Q  K+ P D KARR+FV++GGLK+VQ +K   GS L E +  IN+ 
Sbjct:   421 LYDAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYINSINNC 480

Query:    90 FPEDIVRYYSPRCTDHLLAKVDQFTP 115
             +PE+IVRYYSP  +D LL +VD + P
Sbjct:   481 YPEEIVRYYSPGYSDTLLQRVDSYQP 506

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IMP

GO:0030030 "cell projection organization" evidence=IEA

GO:0030317 "sperm motility" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|Q32L54 SPAG6 "Sperm associated antigen 6" [Bos taurus (taxid:9913)]

 Score = 220 (82.5 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 43/86 (50%), Positives = 60/86 (69%)

Query:    30 LYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINSY 89
             LY++PP IL   + Q  K+ P D KARR+FV++GGLK+VQ +K   GS L E +  IN+ 
Sbjct:   421 LYDAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYINSINNC 480

Query:    90 FPEDIVRYYSPRCTDHLLAKVDQFTP 115
             +PE+IVRYYSP  ++ LL +VD + P
Sbjct:   481 YPEEIVRYYSPGYSETLLQRVDSYQP 506

GO:0030317 "sperm motility" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

UNIPROTKB|E1C6P7 SPAG6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 211 (79.3 bits), Expect = 2.1e-16, P = 2.1e-16
 Identities = 40/87 (45%), Positives = 61/87 (70%)

Query:    29 LLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEAVTMINS 88
             LL+++PP I+   + Q  K+ P D KARR+FV++GGLK+VQ +K   GS L E +  IN+
Sbjct:   420 LLHDAPPNIMKHIVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYINTINN 479

Query:    89 YFPEDIVRYYSPRCTDHLLAKVDQFTP 115
              +PE++VRYYSP  ++ LL +V+ + P
Sbjct:   480 CYPEEVVRYYSPGYSEMLLERVENYQP 506


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      151       151   0.00097  104 3  11 22  0.48    31
                                                     30  0.40    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  578 (61 KB)
  Total size of DFA:  143 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.48u 0.08s 16.56t   Elapsed:  00:00:15
  Total cpu time:  16.48u 0.08s 16.56t   Elapsed:  00:00:15
  Start:  Thu Aug 15 10:57:41 2013   End:  Thu Aug 15 10:57:56 2013

GO:0015630 "microtubule cytoskeleton" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9JLI7	SPAG6_MOUSE	No assigned EC number	0.5116	0.5695	0.1696	yes	N/A
O75602	SPAG6_HUMAN	No assigned EC number	0.5232	0.5695	0.1689	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
KOG0166|consensus	514		96.02
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	88.93
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	83.85
KOG4025|consensus	207		81.68

>KOG0166|consensus

Probab=96.02  E-value=0.035  Score=51.83  Aligned_cols=108  Identities=10%  Similarity=0.031  Sum_probs=92.4

Q ss_pred             HHHHHHH-HHHHHHHHhccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCCCC-chHHH
Q psy2448           4 QELKSRN-SGLQISFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAG-SELCE   81 (151)
Q Consensus         4 ~DLk~K~-rALK~IiqKct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e~g-s~L~E   81 (151)
                      .|+|+.+ -|+.+..+.++  +..-..|.+-.  |+|+....+ .+..++. .+..+.+.+.+.++.|...+++ ..+.+
T Consensus       378 f~~rKEAawaIsN~ts~g~--~~qi~yLv~~g--iI~plcdlL-~~~D~~i-i~v~Ld~l~nil~~~e~~~~~~~n~~~~  451 (514)
T KOG0166|consen  378 FDIRKEAAWAISNLTSSGT--PEQIKYLVEQG--IIKPLCDLL-TCPDVKI-ILVALDGLENILKVGEAEKNRGTNPLAI  451 (514)
T ss_pred             hHHHHHHHHHHHhhcccCC--HHHHHHHHHcC--Cchhhhhcc-cCCChHH-HHHHHHHHHHHHHHHHHhccccccHHHH
Confidence            4677777 88888888888  55666666555  888888888 7777777 8999999999999999988876 89999


Q ss_pred             HHHHhhcCChhhhhhccCC-CccHHHHHHHhhcCCCC
Q psy2448          82 AVTMINSYFPEDIVRYYSP-RCTDHLLAKVDQFTPQV  117 (151)
Q Consensus        82 ~I~~IN~cfPeEIV~YYSP-gY~e~LL~kld~y~p~~  117 (151)
                      +|+.++++...|..+++.. ++.+...+-||.|-+.-
T Consensus       452 ~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e  488 (514)
T KOG0166|consen  452 MIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE  488 (514)
T ss_pred             HHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999 99999999999997764

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=88.93  E-value=4.1  Score=27.21  Aligned_cols=61  Identities=16%  Similarity=0.213  Sum_probs=48.6

Q ss_pred             cccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCCCCchHHH
Q psy2448          21 VSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCE   81 (151)
Q Consensus        21 t~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e~gs~L~E   81 (151)
                      .-++.|-.+|.+.-+.+.++++.=++.+.-+.+..+..++..|.+..+-++-.+.....++
T Consensus        49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~  109 (120)
T cd00020          49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQK  109 (120)
T ss_pred             CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHH
Confidence            4567777788877789999999999999888889999999999999998885554444444

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=83.85  E-value=6.2  Score=26.31  Aligned_cols=92  Identities=16%  Similarity=0.133  Sum_probs=65.7

Q ss_pred             ccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCCCCchHHHH----HHHhhcCChhhhhhc
Q psy2448          22 SFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEA----VTMINSYFPEDIVRY   97 (151)
Q Consensus        22 ~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e~gs~L~E~----I~~IN~cfPeEIV~Y   97 (151)
                      -++.|-.+|.+.-+.+....+.-++++--+++..++.|+..|++..+-++=......+++.    +..|=.-.|+-...+
T Consensus         8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   87 (120)
T cd00020           8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV   87 (120)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            3455666666655788888888899988888999999999999999999855556666552    333333344444455


Q ss_pred             cCCCccHHHHHHHhhc
Q psy2448          98 YSPRCTDHLLAKVDQF  113 (151)
Q Consensus        98 YSPgY~e~LL~kld~y  113 (151)
                      ...|.-+.|++-++..
T Consensus        88 ~~~g~l~~l~~~l~~~  103 (120)
T cd00020          88 LEAGGVPKLVNLLDSS  103 (120)
T ss_pred             HHCCChHHHHHHHhcC
Confidence            6677888888887765

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG4025|consensus

Probab=81.68  E-value=2.3  Score=35.94  Aligned_cols=74  Identities=19%  Similarity=0.351  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHHHHHHhccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCCCCchHHHH
Q psy2448           3 PQELKSRNSGLQISFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCEA   82 (151)
Q Consensus         3 ~~DLk~K~rALK~IiqKct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e~gs~L~E~   82 (151)
                      -|||-.|++|||.|+.+.                             |..-..|..|.     +.|.+|    .|.+++.
T Consensus        95 fqeLn~ka~aLk~iLSri-----------------------------PdEinDR~~FL-----eTIK~I----ASaIKkL  136 (207)
T KOG4025|consen   95 FQELNKKAIALKRILSRI-----------------------------PDEINDRHAFL-----ETIKLI----ASAIKKL  136 (207)
T ss_pred             HHHHHHHHHHHHHHHHhC-----------------------------cHhhhhHHHHH-----HHHHHH----HHHHHHH
Confidence            478989999999998764                             44556678884     344444    4678888


Q ss_pred             HHHhhcCCh--------------hhhhhccCCCccHHHHHHHhhcCC
Q psy2448          83 VTMINSYFP--------------EDIVRYYSPRCTDHLLAKVDQFTP  115 (151)
Q Consensus        83 I~~IN~cfP--------------eEIV~YYSPgY~e~LL~kld~y~p  115 (151)
                      .+.||+.|-              .|.|+ ||..||.+|-.-..+=++
T Consensus       137 Ld~vN~v~~~~p~t~~~AvE~rKkEFVk-YSK~FS~TLKtYFKdGk~  182 (207)
T KOG4025|consen  137 LDAVNAVYRIVPLTAQPAVEKRKKEFVK-YSKRFSNTLKTYFKDGKK  182 (207)
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCc
Confidence            888888874              24444 688888887665554344

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	98.19
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	97.92
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	97.52
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	96.6
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	95.76
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	95.64
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	95.04
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	94.82
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	93.82
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	93.72
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	93.41
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	93.06
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	92.66
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	91.75
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	91.61
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	89.07
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	86.78
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	81.11
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	81.06

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=98.19  E-value=3.5e-06  Score=71.24  Aligned_cols=102  Identities=14%  Similarity=0.157  Sum_probs=71.3

Q ss_pred             hHHHHHHH-HHHHHHHHhc-----------cccchhhhhhccCChhhHHHHHH------HHHhhcCCChHHhHHHHhhhh
Q psy2448           3 PQELKSRN-SGLQISFLSN-----------VSFSFVDLLLYESPPEILLPALK------QLCKIFPVDLKARRVFVSAGG   64 (151)
Q Consensus         3 ~~DLk~K~-rALK~IiqKc-----------t~l~ALEpLL~~aP~~ILKyVl~------QfsKvLP~D~kaRr~FVtSGG   64 (151)
                      ..+.|+.+ .||.++...+           .-+++|-.||....++|+..+|.      |+++-++++.+.++.|...||
T Consensus       371 ~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~gg  450 (510)
T 3ul1_B          371 DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGG  450 (510)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTH
T ss_pred             CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCc
Confidence            35677777 8888876543           34677777787778899988875      455556888999999999999


Q ss_pred             hHHHHhcCCCCCchHHH-HHHHhhcCChh---hhhhccCCCccH
Q psy2448          65 LKRVQALKPPAGSELCE-AVTMINSYFPE---DIVRYYSPRCTD  104 (151)
Q Consensus        65 LkklQei~~e~gs~L~E-~I~~IN~cfPe---EIV~YYSPgY~e  104 (151)
                      +++|++++......+++ +.+.|+.+|++   |...++...+++
T Consensus       451 l~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~  494 (510)
T 3ul1_B          451 LDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSE  494 (510)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHCC----------------
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCcc
Confidence            99999999888888865 78899999984   344454444443

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=97.92  E-value=3.2e-05  Score=66.58  Aligned_cols=98  Identities=17%  Similarity=0.216  Sum_probs=82.1

Q ss_pred             hHHHHHHH-HHHHH---------HHHhccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcC
Q psy2448           3 PQELKSRN-SGLQI---------SFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALK   72 (151)
Q Consensus         3 ~~DLk~K~-rALK~---------IiqKct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~   72 (151)
                      +++++..+ .||..         .+.++.-++.|-.||....++|.+.++.-++++. .+.+.|+.|...||+..|+++.
T Consensus       429 ~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~i~~~g~l~~L~~ll  507 (644)
T 2z6h_A          429 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELL  507 (644)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCHHHHHHHHHcCChhHHHHHH
Confidence            56777777 88874         5778888999999999888999999999888865 5789999999999999999998


Q ss_pred             CCCCchHHH----------------H-----HHHhhcCChhhhhhccCCC
Q psy2448          73 PPAGSELCE----------------A-----VTMINSYFPEDIVRYYSPR  101 (151)
Q Consensus        73 ~e~gs~L~E----------------~-----I~~IN~cfPeEIV~YYSPg  101 (151)
                      ..++..+++                |     ++.|+++|++|.++||.+.
T Consensus       508 ~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~~~w~~~~  557 (644)
T 2z6h_A          508 HSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETA  557 (644)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSCGGGC---
T ss_pred             cCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCCccccccc
Confidence            888877755                3     6689999999999999543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=97.52  E-value=0.0002  Score=60.51  Aligned_cols=91  Identities=15%  Similarity=0.222  Sum_probs=66.9

Q ss_pred             hHHHHHHH-HHHHHHHHhcc-----------ccchhhhhhccCChhhHHHHHHHHHhh------cCCChHHhHHHHhhhh
Q psy2448           3 PQELKSRN-SGLQISFLSNV-----------SFSFVDLLLYESPPEILLPALKQLCKI------FPVDLKARRVFVSAGG   64 (151)
Q Consensus         3 ~~DLk~K~-rALK~IiqKct-----------~l~ALEpLL~~aP~~ILKyVl~QfsKv------LP~D~kaRr~FVtSGG   64 (151)
                      ..++|..+ .||.++...++           -+++|=.||...-++|+..+|.-+..+      +.++.+.++.|..+||
T Consensus       390 ~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~gg  469 (529)
T 3tpo_A          390 DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGG  469 (529)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCc
Confidence            34566666 88888776443           355666677767788888887655544      5788889999999999


Q ss_pred             hHHHHhcCCCCCchHHH-HHHHhhcCChhh
Q psy2448          65 LKRVQALKPPAGSELCE-AVTMINSYFPED   93 (151)
Q Consensus        65 LkklQei~~e~gs~L~E-~I~~IN~cfPeE   93 (151)
                      +.+|++++......+++ ..+.|..+|++|
T Consensus       470 l~~ie~Lq~~~n~~i~~~A~~iie~yf~~~  499 (529)
T 3tpo_A          470 LDKIEALQRHENESVYKASLNLIEKYFSVE  499 (529)
T ss_dssp             HHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            99999999888888877 466777777754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=96.60  E-value=0.004  Score=51.72  Aligned_cols=91  Identities=16%  Similarity=0.226  Sum_probs=68.2

Q ss_pred             hHHHHHHH-HHHHHHHHhcc-------------ccchhhhhhccCChhhHHHHHHHHHhhcCCCh-----------HHhH
Q psy2448           3 PQELKSRN-SGLQISFLSNV-------------SFSFVDLLLYESPPEILLPALKQLCKIFPVDL-----------KARR   57 (151)
Q Consensus         3 ~~DLk~K~-rALK~IiqKct-------------~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~-----------kaRr   57 (151)
                      ..++|..+ .||.++....+             -++.|-.+|...-+.+..+++.-+..++-...           ...+
T Consensus       396 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~  475 (530)
T 1wa5_B          396 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENAD  475 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHH
Confidence            34667777 88888877543             35666667777777888888777777765433           2567


Q ss_pred             HHHhhhhhHHHHhcCCCCCchHH-HHHHHhhcCChhh
Q psy2448          58 VFVSAGGLKRVQALKPPAGSELC-EAVTMINSYFPED   93 (151)
Q Consensus        58 ~FVtSGGLkklQei~~e~gs~L~-E~I~~IN~cfPeE   93 (151)
                      .|...||+.+|+.+...+...++ ..+..|+++|++|
T Consensus       476 ~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~  512 (530)
T 1wa5_B          476 FIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE  512 (530)
T ss_dssp             HHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence            89999999999999888888884 4778888888754

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=95.76  E-value=0.057  Score=43.54  Aligned_cols=81  Identities=17%  Similarity=0.185  Sum_probs=64.1

Q ss_pred             hHHHHHHH-HHHHHH---------HHhccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcC
Q psy2448           3 PQELKSRN-SGLQIS---------FLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALK   72 (151)
Q Consensus         3 ~~DLk~K~-rALK~I---------iqKct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~   72 (151)
                      +++++..+ .||..+         +..+.-++.|-.++.+.-++|.+.+..-++.+. .|...++.|+..||+.+|+++.
T Consensus       432 ~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~-~~~~~~~~i~~~~~~~~L~~l~  510 (529)
T 1jdh_A          432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELL  510 (529)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT-TSHHHHHHHHHTTCHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh-cCHHHHHHHHHcCChHHHHHHh
Confidence            45565555 666654         555667788888898888899999888877754 6789999999999999999998


Q ss_pred             CCCCchHHHHHH
Q psy2448          73 PPAGSELCEAVT   84 (151)
Q Consensus        73 ~e~gs~L~E~I~   84 (151)
                      ..+...++++..
T Consensus       511 ~~~~~~v~~~a~  522 (529)
T 1jdh_A          511 HSRNEGVATYAA  522 (529)
T ss_dssp             GCSSHHHHHHHH
T ss_pred             cCCCHHHHHHHH
Confidence            888888877543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=95.64  E-value=0.042  Score=49.39  Aligned_cols=78  Identities=18%  Similarity=0.200  Sum_probs=65.8

Q ss_pred             hHHHHHHH-HHHHHH---------HHhccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcC
Q psy2448           3 PQELKSRN-SGLQIS---------FLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALK   72 (151)
Q Consensus         3 ~~DLk~K~-rALK~I---------iqKct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~   72 (151)
                      +++++..+ .||..+         |..+.-++.|-.||....++|.+.++.-++.+. .|.+.|+.|...||+..|.++.
T Consensus       565 ~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~-~~~~~~~~i~~~g~i~~L~~Ll  643 (780)
T 2z6g_A          565 MEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELL  643 (780)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTCHHHHHHGG
T ss_pred             hHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHCCCHHHHHHHH
Confidence            46777777 888774         677888999999999989999999988888775 7899999999999999999997


Q ss_pred             CCCCchHHH
Q psy2448          73 PPAGSELCE   81 (151)
Q Consensus        73 ~e~gs~L~E   81 (151)
                      ......+++
T Consensus       644 ~~~~~~Vr~  652 (780)
T 2z6g_A          644 HSRNEGVAT  652 (780)
T ss_dssp             GCSCHHHHH
T ss_pred             cCCCHHHHH
Confidence            777777654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=95.04  E-value=0.016  Score=45.58  Aligned_cols=90  Identities=18%  Similarity=0.188  Sum_probs=63.5

Q ss_pred             HHHHHHH-HHHHHHHHhc-----------cccchhhhhhccCChhhHHHHHHHHHhhcCCCh-----------HHhHHHH
Q psy2448           4 QELKSRN-SGLQISFLSN-----------VSFSFVDLLLYESPPEILLPALKQLCKIFPVDL-----------KARRVFV   60 (151)
Q Consensus         4 ~DLk~K~-rALK~IiqKc-----------t~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~-----------kaRr~FV   60 (151)
                      .++|..+ .||-++....           .-+++|-.+|....+.+.+.++.-+..++-...           .....|.
T Consensus       332 ~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~  411 (450)
T 2jdq_A          332 FRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIE  411 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHH
Confidence            4566666 7887776542           245555666666667888877766666554332           2457899


Q ss_pred             hhhhhHHHHhcCCCCCchHHH-HHHHhhcCChhh
Q psy2448          61 SAGGLKRVQALKPPAGSELCE-AVTMINSYFPED   93 (151)
Q Consensus        61 tSGGLkklQei~~e~gs~L~E-~I~~IN~cfPeE   93 (151)
                      ..||+.+|+.+...+...+++ .+..|+++|++|
T Consensus       412 ~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  445 (450)
T 2jdq_A          412 EAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE  445 (450)
T ss_dssp             HHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence            999999999998777666654 788899988765

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=94.82  E-value=0.12  Score=37.19  Aligned_cols=79  Identities=22%  Similarity=0.212  Sum_probs=61.4

Q ss_pred             hHHHHHHH-HHHHHHHHh----------ccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhc
Q psy2448           3 PQELKSRN-SGLQISFLS----------NVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQAL   71 (151)
Q Consensus         3 ~~DLk~K~-rALK~IiqK----------ct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei   71 (151)
                      ..+++..+ .+|.++...          ..-++.|-.+|...-+.+...++.=++.+.-+++..++.++..|++..+.++
T Consensus       141 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~l  220 (252)
T 4hxt_A          141 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKL  220 (252)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence            34566666 777766542          2245667777777677999999999999999999999999999999999999


Q ss_pred             CCCCCchHHH
Q psy2448          72 KPPAGSELCE   81 (151)
Q Consensus        72 ~~e~gs~L~E   81 (151)
                      -......+++
T Consensus       221 l~~~~~~v~~  230 (252)
T 4hxt_A          221 LTSTDSEVQK  230 (252)
T ss_dssp             GGCSCHHHHH
T ss_pred             HCCCcHHHHH
Confidence            6666666655

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=93.82  E-value=0.45  Score=34.08  Aligned_cols=110  Identities=18%  Similarity=0.145  Sum_probs=75.4

Q ss_pred             hHHHHHHH-HHHHHHHHhcc----------ccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhc
Q psy2448           3 PQELKSRN-SGLQISFLSNV----------SFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQAL   71 (151)
Q Consensus         3 ~~DLk~K~-rALK~IiqKct----------~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei   71 (151)
                      ..++|..+ ++|..+.....          -++.|-.+|...-+.+...++.-++.+.-++...|+.++..|++..+-++
T Consensus        15 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l   94 (252)
T 4hxt_A           15 DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL   94 (252)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence            35666677 88877766543          45666677776678999999999999999999999999999999999888


Q ss_pred             CCCCCchHHH-HHHHhhc---CChhhhhhccCCCccHHHHHHHhh
Q psy2448          72 KPPAGSELCE-AVTMINS---YFPEDIVRYYSPRCTDHLLAKVDQ  112 (151)
Q Consensus        72 ~~e~gs~L~E-~I~~IN~---cfPeEIV~YYSPgY~e~LL~kld~  112 (151)
                      -......+++ .+..+.+   ..|+-.......|.-+.|++-+..
T Consensus        95 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~  139 (252)
T 4hxt_A           95 LTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS  139 (252)
T ss_dssp             TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred             HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC
Confidence            5555555544 3333332   234333334445666666665553

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=93.72  E-value=0.5  Score=33.59  Aligned_cols=110  Identities=18%  Similarity=0.116  Sum_probs=77.1

Q ss_pred             hHHHHHHH-HHHHHHHHhc----------cccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhc
Q psy2448           3 PQELKSRN-SGLQISFLSN----------VSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQAL   71 (151)
Q Consensus         3 ~~DLk~K~-rALK~IiqKc----------t~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei   71 (151)
                      ..+++..+ .+|..+....          --+++|-.+|...-+.+...++.-++.+.-++...|..++..||+..|-++
T Consensus        25 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  104 (210)
T 4db6_A           25 DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL  104 (210)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHH
Confidence            45667777 8887776432          235666677777677899999999999998999999999999999998888


Q ss_pred             CCCCCchHHH-HH---HHhhcCChhhhhhccCCCccHHHHHHHhh
Q psy2448          72 KPPAGSELCE-AV---TMINSYFPEDIVRYYSPRCTDHLLAKVDQ  112 (151)
Q Consensus        72 ~~e~gs~L~E-~I---~~IN~cfPeEIV~YYSPgY~e~LL~kld~  112 (151)
                      =..+...+++ ..   ..|-...++.+-.....|.-+.|++-++.
T Consensus       105 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  149 (210)
T 4db6_A          105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS  149 (210)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred             HcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC
Confidence            5555555544 33   33333345544445566777777776653

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=93.41  E-value=0.37  Score=34.32  Aligned_cols=79  Identities=16%  Similarity=0.172  Sum_probs=60.5

Q ss_pred             hHHHHHHH-HHHHHHHHh----------ccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhc
Q psy2448           3 PQELKSRN-SGLQISFLS----------NVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQAL   71 (151)
Q Consensus         3 ~~DLk~K~-rALK~IiqK----------ct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei   71 (151)
                      ..+++..+ .||.++...          ..-++.|-.+|...-+.+.++++.-++.+.-++...|..++..|++..|.++
T Consensus       109 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~l  188 (210)
T 4db6_A          109 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL  188 (210)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHG
T ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHH
Confidence            34667777 788777632          2235555566666677899999999999999999999999999999999998


Q ss_pred             CCCCCchHHH
Q psy2448          72 KPPAGSELCE   81 (151)
Q Consensus        72 ~~e~gs~L~E   81 (151)
                      -......+++
T Consensus       189 l~~~~~~v~~  198 (210)
T 4db6_A          189 QSHENEKIQK  198 (210)
T ss_dssp             GGCSCHHHHH
T ss_pred             HhCCCHHHHH
Confidence            6666666655

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=93.06  E-value=0.3  Score=40.21  Aligned_cols=88  Identities=17%  Similarity=0.209  Sum_probs=64.8

Q ss_pred             HHHHHHH-HHHHHHHHh-----------ccccchhhhhhccCChhhHHHHHHHHHhhcCCChH-----------HhHHHH
Q psy2448           4 QELKSRN-SGLQISFLS-----------NVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLK-----------ARRVFV   60 (151)
Q Consensus         4 ~DLk~K~-rALK~IiqK-----------ct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~k-----------aRr~FV   60 (151)
                      .++|..+ .||.++...           ..-++.|-.||...-+.+...++.-+..++-...+           .+..|.
T Consensus       385 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~  464 (528)
T 4b8j_A          385 FDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMID  464 (528)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHH
Confidence            4667777 888888766           34566777777777778888888887777754443           677889


Q ss_pred             hhhhhHHHHhcCCCCCchHHHHHHH-hhcCCh
Q psy2448          61 SAGGLKRVQALKPPAGSELCEAVTM-INSYFP   91 (151)
Q Consensus        61 tSGGLkklQei~~e~gs~L~E~I~~-IN~cfP   91 (151)
                      ..||+.+|.++.......+++.... |..+|.
T Consensus       465 ~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~  496 (528)
T 4b8j_A          465 EAEGLEKIENLQSHDNNEIYEKAVKILEAYWM  496 (528)
T ss_dssp             HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred             HCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence            9999999999988888888776554 344443

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=92.66  E-value=0.74  Score=33.54  Aligned_cols=79  Identities=16%  Similarity=0.172  Sum_probs=61.4

Q ss_pred             hHHHHHHH-HHHHHHHHh----------ccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhc
Q psy2448           3 PQELKSRN-SGLQISFLS----------NVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQAL   71 (151)
Q Consensus         3 ~~DLk~K~-rALK~IiqK----------ct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei   71 (151)
                      ..+++..+ .||.++...          ..-++.|-.+|....+.+...++.-++.+.-+++..+..++..|++..|.++
T Consensus       151 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  230 (252)
T 4db8_A          151 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL  230 (252)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHH
Confidence            34566666 777766542          3346667777777778999999999999999999999999999999999998


Q ss_pred             CCCCCchHHH
Q psy2448          72 KPPAGSELCE   81 (151)
Q Consensus        72 ~~e~gs~L~E   81 (151)
                      -......+++
T Consensus       231 l~~~~~~v~~  240 (252)
T 4db8_A          231 QSHENEKIQK  240 (252)
T ss_dssp             TTCSSSHHHH
T ss_pred             hCCCCHHHHH
Confidence            6666666655

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=91.75  E-value=1.2  Score=32.39  Aligned_cols=108  Identities=17%  Similarity=0.122  Sum_probs=73.6

Q ss_pred             HHHHHH-HHHHHHHH----------hccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCC
Q psy2448           5 ELKSRN-SGLQISFL----------SNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKP   73 (151)
Q Consensus         5 DLk~K~-rALK~Iiq----------Kct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~   73 (151)
                      +.+..+ ++|..++.          +..-++.|-.+|....+.+...++.-++.+.-++.+.|+.++..||+..|-++=.
T Consensus        27 ~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~  106 (252)
T 4db8_A           27 QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS  106 (252)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc
Confidence            455555 77755443          2334566667777767899999999999999899999999999999999988854


Q ss_pred             CCCchHHH-H---HHHhhcCChhhhhhccCCCccHHHHHHHhh
Q psy2448          74 PAGSELCE-A---VTMINSYFPEDIVRYYSPRCTDHLLAKVDQ  112 (151)
Q Consensus        74 e~gs~L~E-~---I~~IN~cfPeEIV~YYSPgY~e~LL~kld~  112 (151)
                      .+...+++ .   +..|-...+..+......|.-+.|++-++.
T Consensus       107 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~  149 (252)
T 4db8_A          107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS  149 (252)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC
T ss_pred             CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC
Confidence            45555544 2   333333333333445566777777777654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=91.61  E-value=0.4  Score=40.01  Aligned_cols=88  Identities=15%  Similarity=0.124  Sum_probs=61.2

Q ss_pred             hHHHHHHH-HHHHHHH---------HhccccchhhhhhccC-C-----hhhHHHHHHHHHhhcCCChHHhHHHHhhhhhH
Q psy2448           3 PQELKSRN-SGLQISF---------LSNVSFSFVDLLLYES-P-----PEILLPALKQLCKIFPVDLKARRVFVSAGGLK   66 (151)
Q Consensus         3 ~~DLk~K~-rALK~Ii---------qKct~l~ALEpLL~~a-P-----~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLk   66 (151)
                      .++.++++ .||.++-         .+ .-++.|=.||... |     ++++..++..++.++.+|++.++.|+..||+.
T Consensus       344 ~~~v~~~A~~aL~nls~~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~  422 (457)
T 1xm9_A          344 NSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLN  422 (457)
T ss_dssp             CHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHH
T ss_pred             CHhHHHHHHHHHHHHhcCHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHH
Confidence            45666666 7766552         22 1233333444443 2     47999999999999999999999999999999


Q ss_pred             HHHhcCCCC-Cch-HHHHHHHhhcCCh
Q psy2448          67 RVQALKPPA-GSE-LCEAVTMINSYFP   91 (151)
Q Consensus        67 klQei~~e~-gs~-L~E~I~~IN~cfP   91 (151)
                      +|.+|.... ..+ -++.-..|.++|-
T Consensus       423 ~L~~L~~~~~~~~i~~~A~~~L~~~~~  449 (457)
T 1xm9_A          423 NIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence            999996554 334 3456666777764

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=89.07  E-value=1.6  Score=35.41  Aligned_cols=111  Identities=12%  Similarity=0.128  Sum_probs=75.6

Q ss_pred             hHHHHHHH-HHHHHHHHhc----------cccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhc
Q psy2448           3 PQELKSRN-SGLQISFLSN----------VSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQAL   71 (151)
Q Consensus         3 ~~DLk~K~-rALK~IiqKc----------t~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei   71 (151)
                      +..+|.++ .||-+|....          .-++.|-.+|......+.+.++.=++.+.-.+++.++.||..|+++.|=++
T Consensus       138 ~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~L  217 (296)
T 1xqr_A          138 CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL  217 (296)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHH
Confidence            45678888 9998887432          234455555666678999988888888887899999999999999999887


Q ss_pred             CCCCCchHHH----HHHHhhcCChhhhhhccC--CCccHHHHHHHhhc
Q psy2448          72 KPPAGSELCE----AVTMINSYFPEDIVRYYS--PRCTDHLLAKVDQF  113 (151)
Q Consensus        72 ~~e~gs~L~E----~I~~IN~cfPeEIV~YYS--PgY~e~LL~kld~y  113 (151)
                      =..+...+++    .+..|-...+..+.....  +.|...|=++++.-
T Consensus       218 L~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~l  265 (296)
T 1xqr_A          218 VRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL  265 (296)
T ss_dssp             HTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHH
T ss_pred             HcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHc
Confidence            4444555554    444555556655554443  34555554555543

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=86.78  E-value=2.2  Score=34.52  Aligned_cols=115  Identities=13%  Similarity=0.038  Sum_probs=79.7

Q ss_pred             ChHHHHHHH-HHHHHHHHhcc-------ccchhhhh---hccC-ChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHH
Q psy2448           2 PPQELKSRN-SGLQISFLSNV-------SFSFVDLL---LYES-PPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQ   69 (151)
Q Consensus         2 ~~~DLk~K~-rALK~IiqKct-------~l~ALEpL---L~~a-P~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQ   69 (151)
                      +..++|..+ ++|-+|.+...       ...+|.+|   |... ...+.+-++.-++.+.-+++.++..|+..||+..|-
T Consensus        94 ~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~  173 (296)
T 1xqr_A           94 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLM  173 (296)
T ss_dssp             SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHH
Confidence            356788888 88888876432       22455554   4443 578999999999999999999999999999999998


Q ss_pred             hcCCCCCchHHH-HHHH---hhcCChhhhhhccCCCccHHHHHHHhhcCCC
Q psy2448          70 ALKPPAGSELCE-AVTM---INSYFPEDIVRYYSPRCTDHLLAKVDQFTPQ  116 (151)
Q Consensus        70 ei~~e~gs~L~E-~I~~---IN~cfPeEIV~YYSPgY~e~LL~kld~y~p~  116 (151)
                      .+=.....+++. ..-.   +=...|+-+.....-|.-+.|.+-+..-.+.
T Consensus       174 ~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~  224 (296)
T 1xqr_A          174 RAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSP  224 (296)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCST
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChh
Confidence            773344455433 3333   3233676666666778888888877654443

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=81.11  E-value=16  Score=30.10  Aligned_cols=109  Identities=17%  Similarity=0.071  Sum_probs=76.8

Q ss_pred             HHHHHHH-HHHHHHHHh----------ccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcC
Q psy2448           4 QELKSRN-SGLQISFLS----------NVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALK   72 (151)
Q Consensus         4 ~DLk~K~-rALK~IiqK----------ct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~   72 (151)
                      ++++..+ .+|..+...          ..-++.|-.+|...-+.+...++.-++.+..++...++.++..|++..|-.+-
T Consensus       271 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL  350 (530)
T 1wa5_B          271 TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL  350 (530)
T ss_dssp             HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH
Confidence            4555555 777766543          24467777788777788999999999999999999999999999999998885


Q ss_pred             CCCCchHH-HHHHHh---hcCChhhhhhccCCCccHHHHHHHhh
Q psy2448          73 PPAGSELC-EAVTMI---NSYFPEDIVRYYSPRCTDHLLAKVDQ  112 (151)
Q Consensus        73 ~e~gs~L~-E~I~~I---N~cfPeEIV~YYSPgY~e~LL~kld~  112 (151)
                      ..+...++ +.+..|   -...++.+..+...|.-+.|++-+..
T Consensus       351 ~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  394 (530)
T 1wa5_B          351 SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV  394 (530)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc
Confidence            55454544 333333   33346655555566777777777754

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=81.06  E-value=12  Score=29.13  Aligned_cols=109  Identities=14%  Similarity=0.089  Sum_probs=72.4

Q ss_pred             HHHHHHH-HHHHHHHHh----------ccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcC
Q psy2448           4 QELKSRN-SGLQISFLS----------NVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALK   72 (151)
Q Consensus         4 ~DLk~K~-rALK~IiqK----------ct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~   72 (151)
                      ++++..+ .+|..+...          ..-++.|-.+|...-+.+...++.-++.+.-++...++.++..|++..|-++-
T Consensus       206 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll  285 (450)
T 2jdq_A          206 TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL  285 (450)
T ss_dssp             HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH
Confidence            3455555 666665442          23456666777766778999999999999999998888899999999998885


Q ss_pred             CCCCchHHH-HHHHhhc---CChhhhhhccCCCccHHHHHHHhh
Q psy2448          73 PPAGSELCE-AVTMINS---YFPEDIVRYYSPRCTDHLLAKVDQ  112 (151)
Q Consensus        73 ~e~gs~L~E-~I~~IN~---cfPeEIV~YYSPgY~e~LL~kld~  112 (151)
                      ..+...+++ .+..+.+   ..++.+-.....|.-+.|++.+..
T Consensus       286 ~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~  329 (450)
T 2jdq_A          286 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT  329 (450)
T ss_dssp             TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc
Confidence            555555543 4444433   234444444445666677766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	151
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-04

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (87), Expect = 2e-04
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 12/77 (15%)

Query: 29  LLYESPPEILLPALKQLCKIFPV---DLKARRVFVS--------AGGLKRVQALKPPAGS 77
           LL  +   I+   L  L  I  +   D +AR + ++        AGG++++   +     
Sbjct: 425 LLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEND 484

Query: 78  ELCE-AVTMINSYFPED 93
           ++ E A  +I +YF E+
Sbjct: 485 KIYEKAYKIIETYFGEE 501

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	96.06
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	94.33
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	94.13
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	93.95
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	91.44
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	89.69
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	84.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	83.4

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.06  E-value=0.009  Score=44.33  Aligned_cols=87  Identities=16%  Similarity=0.237  Sum_probs=61.6

Q ss_pred             HHHHHHH-HHHHHHHHhccc-----------cchhhhhhccCChhhHHHHHHHHHhh------cCCChHHhHHHHhhhhh
Q psy2448           4 QELKSRN-SGLQISFLSNVS-----------FSFVDLLLYESPPEILLPALKQLCKI------FPVDLKARRVFVSAGGL   65 (151)
Q Consensus         4 ~DLk~K~-rALK~IiqKct~-----------l~ALEpLL~~aP~~ILKyVl~QfsKv------LP~D~kaRr~FVtSGGL   65 (151)
                      .+.|..+ .||.++....+.           ++.|-.+|...-+++.+.++.-+.++      .+++...+..|..+||+
T Consensus       328 ~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~  407 (434)
T d1q1sc_         328 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL  407 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCH
Confidence            4566666 888877765441           45555566555667777766555544      57888899999999999


Q ss_pred             HHHHhcCCCCCchHHH-HHHHhhcCC
Q psy2448          66 KRVQALKPPAGSELCE-AVTMINSYF   90 (151)
Q Consensus        66 kklQei~~e~gs~L~E-~I~~IN~cf   90 (151)
                      .+||+++..+...+++ +.+.|..+|
T Consensus       408 ~~i~~L~~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         408 DKIEALQRHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            9999998877777765 556665554

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.33  E-value=0.076  Score=40.88  Aligned_cols=90  Identities=18%  Similarity=0.241  Sum_probs=60.4

Q ss_pred             HHHHHHH-HHHHHHHHhccc----------cchhh---hhhccCChhhHHHHHHHHHhhcCC-----------ChHHhHH
Q psy2448           4 QELKSRN-SGLQISFLSNVS----------FSFVD---LLLYESPPEILLPALKQLCKIFPV-----------DLKARRV   58 (151)
Q Consensus         4 ~DLk~K~-rALK~IiqKct~----------l~ALE---pLL~~aP~~ILKyVl~QfsKvLP~-----------D~kaRr~   58 (151)
                      .+.|.-+ .||-+++..++.          -.+++   .+|.....+++..+|.-+.++|-.           .......
T Consensus       386 ~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~  465 (503)
T d1wa5b_         386 YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADF  465 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred             hhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Confidence            3455555 777777754432          22344   445556788888888777777632           1223456


Q ss_pred             HHhhhhhHHHHhcCCCCCchHHH-HHHHhhcCChhh
Q psy2448          59 FVSAGGLKRVQALKPPAGSELCE-AVTMINSYFPED   93 (151)
Q Consensus        59 FVtSGGLkklQei~~e~gs~L~E-~I~~IN~cfPeE   93 (151)
                      |-.+||+.+|++++..+...+++ +.+.|-.+|++|
T Consensus       466 iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~  501 (503)
T d1wa5b_         466 IEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE  501 (503)
T ss_dssp             HHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence            77899999999998888888866 456667788875

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.099  Score=36.94  Aligned_cols=78  Identities=12%  Similarity=0.106  Sum_probs=61.0

Q ss_pred             ChHHHHHHH-HHHHHHHHhccc----------cchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHh
Q psy2448           2 PPQELKSRN-SGLQISFLSNVS----------FSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQA   70 (151)
Q Consensus         2 ~~~DLk~K~-rALK~IiqKct~----------l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQe   70 (151)
                      +.+++|... ++|+++-.....          +|.|=.||...-+++...++.-+.++.-++.+.|+.++..||+..+-.
T Consensus        14 ~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~   93 (457)
T d1xm9a1          14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVS   93 (457)
T ss_dssp             SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHH
Confidence            356777777 888887654443          677878887778899999999999999999999999999999999876


Q ss_pred             c-CCCCCchH
Q psy2448          71 L-KPPAGSEL   79 (151)
Q Consensus        71 i-~~e~gs~L   79 (151)
                      + .......+
T Consensus        94 ~l~~~~~~~~  103 (457)
T d1xm9a1          94 LLRRTGNAEI  103 (457)
T ss_dssp             HHTTCCCHHH
T ss_pred             HHhccCcHHH
Confidence            5 44334333

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.95  E-value=0.079  Score=38.37  Aligned_cols=115  Identities=13%  Similarity=0.027  Sum_probs=82.1

Q ss_pred             ChHHHHHHH-HHHHHHHHhc----------cccchhhhhhcc-CChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHH
Q psy2448           2 PPQELKSRN-SGLQISFLSN----------VSFSFVDLLLYE-SPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQ   69 (151)
Q Consensus         2 ~~~DLk~K~-rALK~IiqKc----------t~l~ALEpLL~~-aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQ   69 (151)
                      +..++|..+ .+|-.+.+..          .-++.|=.+|.. ..+.+...++.-++.+.-++..++..|+.+||+..+-
T Consensus        71 ~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~  150 (264)
T d1xqra1          71 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLM  150 (264)
T ss_dssp             SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHH
Confidence            345677777 7777776543          335566666764 4678999999999999999999999999999999997


Q ss_pred             hcCCCCCchHHH-HHHHhh---cCChhhhhhccCCCccHHHHHHHhhcCCC
Q psy2448          70 ALKPPAGSELCE-AVTMIN---SYFPEDIVRYYSPRCTDHLLAKVDQFTPQ  116 (151)
Q Consensus        70 ei~~e~gs~L~E-~I~~IN---~cfPeEIV~YYSPgY~e~LL~kld~y~p~  116 (151)
                      .+-......+++ .+..|.   ...|+..-.+..-|..+.|.+-+....+.
T Consensus       151 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~  201 (264)
T d1xqra1         151 RAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSP  201 (264)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCST
T ss_pred             HHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHH
Confidence            774444555544 444443   34677777777778788888877654443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.44  E-value=0.19  Score=36.29  Aligned_cols=94  Identities=13%  Similarity=0.168  Sum_probs=70.6

Q ss_pred             HHHHHHH-HHHHHHHHhcc----------ccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcC
Q psy2448           4 QELKSRN-SGLQISFLSNV----------SFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALK   72 (151)
Q Consensus         4 ~DLk~K~-rALK~IiqKct----------~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~   72 (151)
                      .+.+.++ .||-.++....          -+++|-.+|...-..+..+++.-++.++-.++..+..|+..|++..|-++-
T Consensus       116 ~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL  195 (264)
T d1xqra1         116 DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALV  195 (264)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHH
Confidence            4567777 88887775443          277788888888889999999999999999999999999999999988885


Q ss_pred             CCCCchHHH----HHHHhhcCChhhhhhc
Q psy2448          73 PPAGSELCE----AVTMINSYFPEDIVRY   97 (151)
Q Consensus        73 ~e~gs~L~E----~I~~IN~cfPeEIV~Y   97 (151)
                      ..+...+++    .+..+-...|+.+...
T Consensus       196 ~~~~~~~~~~a~~aL~~L~~~~~~~~~~~  224 (264)
T d1xqra1         196 RTEHSPFHEHVLGALCSLVTDFPQGVREC  224 (264)
T ss_dssp             TSCCSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            556666665    2333444566665543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.69  E-value=0.9  Score=34.72  Aligned_cols=77  Identities=18%  Similarity=0.224  Sum_probs=55.7

Q ss_pred             HHHHHHH-HHHH---------HHHHhccccchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCC
Q psy2448           4 QELKSRN-SGLQ---------ISFLSNVSFSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKP   73 (151)
Q Consensus         4 ~DLk~K~-rALK---------~IiqKct~l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~   73 (151)
                      +|+..-+ .||.         .++.+..-++.|-.||+..-+++....+.-++. |-+|.+.++.|++.||++.+.++-.
T Consensus       433 ~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~-L~~~~~~~~~i~~~g~~~~L~~Ll~  511 (529)
T d1jdha_         433 EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE-LAQDKEAAEAIEAEGATAPLTELLH  511 (529)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH-HTTSHHHHHHHHHTTCHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHH-HhcChhhHHHHHHCCCHHHHHHHhC
Confidence            5565555 6663         345556667777788877667787777666666 4688999999999999999999965


Q ss_pred             CCCchHHH
Q psy2448          74 PAGSELCE   81 (151)
Q Consensus        74 e~gs~L~E   81 (151)
                      ......++
T Consensus       512 s~n~~v~~  519 (529)
T d1jdha_         512 SRNEGVAT  519 (529)
T ss_dssp             CSSHHHHH
T ss_pred             CCCHHHHH
Confidence            55555554

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.94  E-value=2  Score=31.11  Aligned_cols=110  Identities=14%  Similarity=0.018  Sum_probs=70.3

Q ss_pred             HHHHHHH-HHHHHHHH-----------hccccchhhhhhccC-ChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHh
Q psy2448           4 QELKSRN-SGLQISFL-----------SNVSFSFVDLLLYES-PPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQA   70 (151)
Q Consensus         4 ~DLk~K~-rALK~Iiq-----------Kct~l~ALEpLL~~a-P~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQe   70 (151)
                      .|.+..+ .+|+.++.           +..-++.|-.+|... .+++...++.-++.+--++.+.++.++..||+..+-+
T Consensus        27 ~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~  106 (434)
T d1q1sc_          27 LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS  106 (434)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhh
Confidence            3444444 77765543           233455666667555 4577777888888887888999999999999998877


Q ss_pred             cCCCCCchHHH-HHHHhhcC-C--hhhhhhccCCCccHHHHHHHhhc
Q psy2448          71 LKPPAGSELCE-AVTMINSY-F--PEDIVRYYSPRCTDHLLAKVDQF  113 (151)
Q Consensus        71 i~~e~gs~L~E-~I~~IN~c-f--PeEIV~YYSPgY~e~LL~kld~y  113 (151)
                      +-..+...+++ .+.++.++ +  |+--......|.-+.|++.+..+
T Consensus       107 ~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~  153 (434)
T d1q1sc_         107 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP  153 (434)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSS
T ss_pred             ccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhc
Confidence            75555666655 44445433 2  22222344556667777766544

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.40  E-value=2.1  Score=29.83  Aligned_cols=91  Identities=8%  Similarity=-0.014  Sum_probs=64.9

Q ss_pred             cchhhhhhccCChhhHHHHHHHHHhhcCCChHHhHHHHhhhhhHHHHhcCCCCCchHHH-HHHHh---hcCChhhhhhcc
Q psy2448          23 FSFVDLLLYESPPEILLPALKQLCKIFPVDLKARRVFVSAGGLKRVQALKPPAGSELCE-AVTMI---NSYFPEDIVRYY   98 (151)
Q Consensus        23 l~ALEpLL~~aP~~ILKyVl~QfsKvLP~D~kaRr~FVtSGGLkklQei~~e~gs~L~E-~I~~I---N~cfPeEIV~YY   98 (151)
                      +|.|=.+|...-+++..+++.-+.++-=+|.+.|+.+++.||+..|.++=..+...+++ .+.++   -.-.++--..+.
T Consensus         4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~   83 (457)
T d1xm9a1           4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR   83 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            45666778878899999999999999989999999999999999999886666666665 33333   223454333344


Q ss_pred             CCCccHHHHHHHhhc
Q psy2448          99 SPRCTDHLLAKVDQF  113 (151)
Q Consensus        99 SPgY~e~LL~kld~y  113 (151)
                      .-|.-+.|++-+.++
T Consensus        84 ~~g~v~~li~~l~~~   98 (457)
T d1xm9a1          84 RQNGIREAVSLLRRT   98 (457)
T ss_dssp             HTTCHHHHHHHHTTC
T ss_pred             HCCChHHHHHHHhcc
Confidence            445566666655443