Psyllid ID: psy2461

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460--
WIAWTSAPVVYLVIFQHLRPGHAKRTDQNLRQHYQEVESHLPPFLHRIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRVNFFLATRTVEKHSPHPNAHPKSPKPKKPIYKIKPIGGEKNGKERKVLIRKPKAYYPTKDKIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFRRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPEKKILLSYPPWGWINTRDFNQKKLSVSPLDTSANGKISPASSLPPSLMSRGGKLCSPDAKQGPGGPPGMMSINEQIESMISRSTPNMYEQQAWKLRRALQQKEEEAHRKQSSPGAGGRYYGDPVPISPLDYVKNRIAEVMRTSEEDKGSEGLE
cccccccccccEEEEEEEccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEcccccccEEEEEEEcccccEEEEcccEEEEEcccEEEcccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccEEEEEccEEcccEEEEEEEcccccEEEEccccccccccccccccEEEEcEEEEEcccccccccccHHHHHHHHHHcccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccccccccccc
ccccccccEEEEEEHEEcccccccccccccccccccccccccccccHHHccccccccHHcHHHHcccccccEEEEEEcccccccEEEEEEEcccccEEEEccccEEEEEcEEEcccccccccccccccccccEEEEEccccccccEEEEEEEcccccccccccccccccccccccccHHccccccccEEEEEEcccccccEEEEEEEccccEEEEEcccEEcccccEEcccEEEEEEEEEEEcccccccccccHHHHHHHHHHHcccccccccEEccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccHccccccccc
wiawtsapVVYLVIFQhlrpghakrtdQNLRQHYQEVeshlppflHRIKKvrgrrpfrKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRVNFFLATRtvekhsphpnahpkspkpkkpiykikpiggekngkerkvlirkpkayyptkdkikkvrgrrpfrkHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGlllvtgpfalnamplrrvHQNYVIATstqldisgvkvpeaanDHFFRRIKkhnkqprkgdkrSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHpekkillsyppwgwintrdfnqkklsvspldtsangkispasslppslmsrggklcspdakqgpggppgmmSINEQIESMisrstpnmYEQQAWKLRRALQQKEEEAhrkqsspgaggryygdpvpispldyvKNRIAEVMRtseedkgsegle
WIAWTSAPVVYLVIFQHLRPGHAKRTDQNLRQHYQeveshlppflhrikkvrgrrpfrkharrlrsslkpgtiVILVAGVHKGKRGVFLKQLesglllkkNRVNFFLATRtvekhsphpnahpkspkpkkpiykikpiggekngkerkvlirkpkayyptkdkikkvrgrrpfrkharrlrsslkpgtiVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATstqldisgvkVPEAANDHFFrrikkhnkqprkgdkrslfakrkkraykvskarkvmqkdMDEQLLKVikvhpekkillsyppwgwiNTRDFNQKKLSVspldtsangkispasslppslMSRGGKLCSPDAKQGPGGPPGMMSINEQIESMISRSTPNMYEQQAWKLRRALQQKEEEahrkqsspgaggryygdpvPISPLDYVKNRIAEVmrtseedkgsegle
WIAWTSAPVVYLVIFQHLRPGHAKRTDQNLRQHYQEVESHLPPFLHRIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRVNFFLATRTVEkhsphpnahpkspkpkkpiykikpiGGEKNGKERKVLIRKPKAYYPTKDKIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFRRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPEKKILLSYPPWGWINTRDFNQKKLSVSPLDTSANGKIspasslppslmsRGGKLCSPDAKQGPGGPPGMMSINEQIESMISRSTPNMYEQQAWKLRRALQQKEEEAHRKQSSPGAGGRYYGDPVPISPLDYVKNRIAEVMRTSEEDKGSEGLE
*IAWTSAPVVYLVIFQHLRPGH*****************HLPPFLHRIKKVR*************SSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRVNFFLATRT*********************************************YY*************************LKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFR*****************************************QLLKVIKVHPEKKILLSYPPWGWINTRDFN***************************************************************************************************YG*PVPISPLDYVKNR******************
*******PVVYLVIFQHLRPGHAKRTDQNLRQHYQEVESH**************************SLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRVNFFLATRTVEKHSPHP********************************RKPKAYYPT*********************SSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHF**************************************KDMDEQLLKVIKVHPEKKILLSYPPWGWINTRDFNQKKLSV***********************************************EQIESMISRSTPNMYEQQA*****************************DPVPISPLDYVKNRIAE***************
WIAWTSAPVVYLVIFQHLRPGHAKRTDQNLRQHYQEVESHLPPFLHRIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRVNFFLATRTVE***************KKPIYKIKPIGGEKNGKERKVLIRKPKAYYPTKDKIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFRRIKK**********RSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPEKKILLSYPPWGWINTRDFNQKKLSVSPLDTSANGKISPASSLPPSLMSRGGKLCSPDAKQGPGGPPGMMSINEQIESMISRSTPNMYEQQAWKLRR******************GGRYYGDPVPISPLDYVKNRIAEVMR************
WIAWTSAPVVYLVIFQHLRPG*******NLRQHYQEVESHLPPFLHRI*K*RGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRVNFFLATRTVEKHSPHPNAHPKSPKPKKPIYKIKPIGGEKNGKERKVLIRKPKAYYPTKD*****************LRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFRRIKKHNK*******RSLFA*RKKRAYKVSKARKVMQKDMDEQLLKVIKVHPEKKILLSYPPWGWINTRDFNQKKLSVSPLDT*********************************************ESMISRSTPNMYEQQAWKLRRALQQKEEE************RYYGDPVPISPLDYVKNRIAEVM*************
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WIAWTSAPVVYLVIFQHLRPGHAKRTDQNLRQHYQEVESHLPPFLHRIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLKKNRVNFFLATRTVEKHSPHPNAHPKSPKPKKPIYKIKPIGGEKNGKERKVLIRKPKAYYPTKDKIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFRRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPEKKILLSYPPWGWINTRDFNQKKLSVSPLDTSANGKISPASSLPPSLMSRGGKLCSPDAKQGPGGPPGMMSINEQIESMISRSTPNMYEQQAWKLRRALQQKEEEAHRKQSSPGAGGRYYGDPVPISPLDYVKNRIAEVMRTSEEDKGSEGLE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query462 2.2.26 [Sep-21-2011]
Q58DQ3287 60S ribosomal protein L6 yes N/A 0.370 0.595 0.525 8e-43
Q2YGT9284 60S ribosomal protein L6 yes N/A 0.370 0.602 0.519 9e-43
Q6QMZ4288 60S ribosomal protein L6 N/A N/A 0.370 0.593 0.514 1e-40
Q02878288 60S ribosomal protein L6 yes N/A 0.370 0.593 0.497 5e-40
P47911296 60S ribosomal protein L6 yes N/A 0.370 0.577 0.491 2e-39
P21533298 60S ribosomal protein L6 yes N/A 0.370 0.573 0.502 2e-39
P47991217 60S ribosomal protein L6 yes N/A 0.354 0.755 0.444 3e-28
P34091234 60S ribosomal protein L6 N/A N/A 0.344 0.679 0.454 3e-27
Q9C9C5233 60S ribosomal protein L6- yes N/A 0.344 0.682 0.430 1e-24
Q9C9C6233 60S ribosomal protein L6- yes N/A 0.344 0.682 0.430 1e-24
>sp|Q58DQ3|RL6_BOVIN 60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3 Back     alignment and function desciption
 Score =  175 bits (443), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 129/177 (72%), Gaps = 6/177 (3%)

Query: 136 KPIGGEKNGKERKVLIRKPKAYYPTKDKIKKV--RGRRPFRKHARRLRSSLKPGTIVILV 193
           KP+GG+KNG  R V +RK   YYPT+D  +K+   G++PF KH R+LR+S+ PGTI+I++
Sbjct: 93  KPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIIL 152

Query: 194 AGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAAN 253
            G H+GKR VFLKQL SGLLLVTGP +LN +PLRR HQ +VIATST++DISGVK+PE   
Sbjct: 153 TGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLT 212

Query: 254 DHFFRRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPE 310
           D +F+  KK  ++PR  +      +R+K  Y++++ RKV QK +D Q+L+ IK  P+
Sbjct: 213 DTYFK--KKKLRKPRHQEGEIFDTEREK--YEITEQRKVDQKAVDSQILRRIKAVPQ 265

Bos taurus (taxid: 9913)
>sp|Q2YGT9|RL6_PIG 60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3 Back     alignment and function description
>sp|Q6QMZ4|RL6_CHILA 60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3 Back     alignment and function description
>sp|Q02878|RL6_HUMAN 60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3 Back     alignment and function description
>sp|P47911|RL6_MOUSE 60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3 Back     alignment and function description
>sp|P21533|RL6_RAT 60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5 Back     alignment and function description
>sp|P47991|RL6_CAEEL 60S ribosomal protein L6 OS=Caenorhabditis elegans GN=rpl-6 PE=1 SV=1 Back     alignment and function description
>sp|P34091|RL6_MESCR 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9C5|RL63_ARATH 60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=2 SV=1 Back     alignment and function description
>sp|Q9C9C6|RL62_ARATH 60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query462
91085243263 PREDICTED: similar to ribosomal protein 0.409 0.718 0.544 1e-50
70909615239 ribosomal protein L6e [Carabus granulatu 0.404 0.782 0.554 4e-47
380012977272 PREDICTED: 60S ribosomal protein L6-like 0.413 0.702 0.548 3e-46
264667343264 ribosomal protein L6 [Chrysomela tremula 0.415 0.727 0.520 4e-46
66559208274 PREDICTED: hypothetical protein LOC40947 0.413 0.697 0.548 6e-46
170057461272 60S ribosomal protein L6 [Culex quinquef 0.409 0.694 0.528 1e-45
322778718281 hypothetical protein SINV_00918 [Solenop 0.396 0.651 0.534 7e-44
239799162299 ACYPI005092 [Acyrthosiphon pisum] 0.411 0.635 0.544 1e-43
193697450299 PREDICTED: 60S ribosomal protein L6-like 0.411 0.635 0.544 3e-43
307178359280 60S ribosomal protein L6 [Camponotus flo 0.396 0.653 0.529 6e-43
>gi|91085243|ref|XP_973115.1| PREDICTED: similar to ribosomal protein L6e [Tribolium castaneum] gi|270009355|gb|EFA05803.1| hypothetical protein TcasGA2_TC030666 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 141/193 (73%), Gaps = 4/193 (2%)

Query: 125 SPKPKKPIYKIKPIGGEKNGKERKVLIRKPKAYYPTKDKIKKVRGRRPFRKHARRLRSSL 184
           + KP KP +  K IGG+KNGKERKV ++K + YYPT+DKI+K   ++ F++H R LRS+L
Sbjct: 57  TKKPAKPAFVTKQIGGDKNGKERKVFLKKRRNYYPTQDKIRKHPAKKTFKQHKRHLRSTL 116

Query: 185 KPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDIS 244
            PGT+ IL+AG HKGKR VFLKQL SGLLLVTGP  +N+ PLRR+ Q YVI T T++D+S
Sbjct: 117 TPGTVCILLAGSHKGKRVVFLKQLHSGLLLVTGPMQINSCPLRRISQRYVIGTQTKIDVS 176

Query: 245 GVKVPEAANDHFFRRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKV 304
           GVK+PE  ND +FRR ++   +  +GD      + KK AYKVS  RK  QK +D+Q+ + 
Sbjct: 177 GVKIPETINDEYFRRKREKRAKKEEGD----IFQAKKEAYKVSDQRKADQKVVDKQVFEA 232

Query: 305 IKVHPEKKILLSY 317
           IK HP++K+LL+Y
Sbjct: 233 IKKHPDRKVLLAY 245

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|70909615|emb|CAJ17232.1| ribosomal protein L6e [Carabus granulatus] Back     alignment and taxonomy information
>gi|380012977|ref|XP_003690548.1| PREDICTED: 60S ribosomal protein L6-like isoform 1 [Apis florea] gi|380012979|ref|XP_003690549.1| PREDICTED: 60S ribosomal protein L6-like isoform 2 [Apis florea] Back     alignment and taxonomy information
>gi|264667343|gb|ACY71257.1| ribosomal protein L6 [Chrysomela tremula] Back     alignment and taxonomy information
>gi|66559208|ref|XP_392988.2| PREDICTED: hypothetical protein LOC409479 [Apis mellifera] gi|328777427|ref|XP_003249340.1| PREDICTED: hypothetical protein LOC409479 [Apis mellifera] Back     alignment and taxonomy information
>gi|170057461|ref|XP_001864492.1| 60S ribosomal protein L6 [Culex quinquefasciatus] gi|167876890|gb|EDS40273.1| 60S ribosomal protein L6 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|322778718|gb|EFZ09134.1| hypothetical protein SINV_00918 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|239799162|dbj|BAH70514.1| ACYPI005092 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|193697450|ref|XP_001945191.1| PREDICTED: 60S ribosomal protein L6-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307178359|gb|EFN67108.1| 60S ribosomal protein L6 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query462
UNIPROTKB|Q2YGT9284 RPL6 "60S ribosomal protein L6 0.363 0.591 0.522 9.3e-43
FB|FBgn0039857262 RpL6 "Ribosomal protein L6" [D 0.380 0.671 0.525 1.5e-42
UNIPROTKB|Q58DQ3287 RPL6 "60S ribosomal protein L6 0.363 0.585 0.522 2.5e-42
UNIPROTKB|F1Q424288 RPL6 "60S ribosomal protein L6 0.363 0.583 0.511 3.6e-41
UNIPROTKB|G3N2R1287 G3N2R1 "60S ribosomal protein 0.363 0.585 0.511 9.6e-41
RGD|619826298 Rpl6 "ribosomal protein L6" [R 0.363 0.563 0.511 1.2e-40
UNIPROTKB|F1LQS3298 Rpl6 "60S ribosomal protein L6 0.363 0.563 0.511 1.2e-40
UNIPROTKB|H7C5Y5297 H7C5Y5 "60S ribosomal protein 0.363 0.565 0.511 1.2e-40
UNIPROTKB|F8W181226 RPL6 "60S ribosomal protein L6 0.363 0.743 0.5 1.6e-40
UNIPROTKB|Q02878288 RPL6 "60S ribosomal protein L6 0.363 0.583 0.5 1.6e-40
UNIPROTKB|Q2YGT9 RPL6 "60S ribosomal protein L6" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 91/174 (52%), Positives = 127/174 (72%)

Query:   139 GGEKNGKERKVLIRKPKAYYPTKDKIKKV--RGRRPFRKHARRLRSSLKPGTIVILVAGV 196
             GG+KNG  R V +RK   YYPT+D  +K+   G++PF KH R+LR+S+ PGTI+I++ G 
Sbjct:    93 GGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGR 152

Query:   197 HKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHF 256
             H+GKR +FLKQL SGLLLVTGP +LN +PLRR HQ +VIATST++DISGVK+PE   D +
Sbjct:   153 HRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAY 212

Query:   257 FRRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPE 310
             F+  KK  ++PR   +  +F   K++ Y++S+ RKV QK +D Q+L+ IK  P+
Sbjct:   213 FK--KKKLRKPRH-QEGEIFDTEKEK-YEISEQRKVDQKAVDSQILRRIKAVPQ 262
GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA
GO:0006412 "translation" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA
FB|FBgn0039857 RpL6 "Ribosomal protein L6" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DQ3 RPL6 "60S ribosomal protein L6" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q424 RPL6 "60S ribosomal protein L6" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G3N2R1 G3N2R1 "60S ribosomal protein L6" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|619826 Rpl6 "ribosomal protein L6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQS3 Rpl6 "60S ribosomal protein L6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|H7C5Y5 H7C5Y5 "60S ribosomal protein L6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F8W181 RPL6 "60S ribosomal protein L6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q02878 RPL6 "60S ribosomal protein L6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q58DQ3RL6_BOVINNo assigned EC number0.52540.37010.5958yesN/A
Q2YGT9RL6_PIGNo assigned EC number0.51970.37010.6021yesN/A
P21533RL6_RATNo assigned EC number0.50280.37010.5738yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query462
cd13156152 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein 6e-53
pfam01159108 pfam01159, Ribosomal_L6e, Ribosomal protein L6e 6e-24
cd13156152 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein 9e-17
COG2163125 COG2163, RPL14A, Ribosomal protein L14E/L6E/L27E [ 7e-11
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6 Back     alignment and domain information 
 Score =  174 bits (444), Expect = 6e-53
 Identities = 78/137 (56%), Positives = 100/137 (72%), Gaps = 5/137 (3%)

Query: 176 HARRLRSSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVI 235
             R+LRSS+ PGT++IL+AG  +GKR VFLKQL+SGLLLVTGPF +N +PLRRV+Q YVI
Sbjct: 1   KPRKLRSSITPGTVLILLAGRFRGKRVVFLKQLDSGLLLVTGPFKINGVPLRRVNQRYVI 60

Query: 236 ATSTQLDISGVKVPEAANDHFFRRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQK 295
           ATST++DISGVKVP+  ND +F+R KK  K+ +K +    F + KK+ Y VS+ RK  QK
Sbjct: 61  ATSTKVDISGVKVPK-LNDAYFKRKKK--KKKKKKEGE--FFEEKKKKYVVSEERKEDQK 115

Query: 296 DMDEQLLKVIKVHPEKK 312
            +D  LL  IK  P  K
Sbjct: 116 AVDAALLAAIKKVPLLK 132

RPL6 contains KOW motif that has an extra ribosomal role as an oncogenic. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. . Length = 152
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e Back     alignment and domain information
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6 Back     alignment and domain information
>gnl|CDD|225074 COG2163, RPL14A, Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 462
PF01159108 Ribosomal_L6e: Ribosomal protein L6e ; InterPro: I 100.0
KOG1694|consensus152 100.0
COG2163125 RPL14A Ribosomal protein L14E/L6E/L27E [Translatio 99.74
PTZ00471134 60S ribosomal protein L27; Provisional 99.26
PRK0433384 50S ribosomal protein L14e; Validated 98.94
KOG1694|consensus152 98.35
COG2163125 RPL14A Ribosomal protein L14E/L6E/L27E [Translatio 98.16
KOG3418|consensus136 98.06
PTZ00065130 60S ribosomal protein L14; Provisional 97.62
PTZ00471134 60S ribosomal protein L27; Provisional 97.44
PRK0433384 50S ribosomal protein L14e; Validated 96.2
CHL0014183 rpl24 ribosomal protein L24; Validated 93.26
KOG3418|consensus136 92.91
PRK1228176 rplX 50S ribosomal protein L24; Reviewed 92.58
PRK01191120 rpl24p 50S ribosomal protein L24P; Validated 88.54
PRK00004105 rplX 50S ribosomal protein L24; Reviewed 87.77
TIGR01079104 rplX_bact ribosomal protein L24, bacterial/organel 86.75
COG0198104 RplX Ribosomal protein L24 [Translation, ribosomal 84.78
TIGR01080114 rplX_A_E ribosomal protein L24p/L26e, archaeal/euk 84.32
KOG3421|consensus136 81.61
>PF01159 Ribosomal_L6e: Ribosomal protein L6e ; InterPro: IPR000915 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information 
Probab=100.00  E-value=5.9e-41  Score=289.16  Aligned_cols=106  Identities=49%  Similarity=0.733  Sum_probs=97.7

Q ss_pred             ccCCcceeeccceEEEcceeeecCCcccCCccChhhhhhhhhccCCCCcccccccchhhhhhhccchHHHHHhHHHHhHH
Q psy2461         221 LNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFRRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQ  300 (462)
Q Consensus       221 lNGVPLRRVnQryVIATSTKVDISgVkip~~ltDaYFkkkK~~~kK~~k~~E~eIF~~e~keKy~iseqrKaDQK~VD~q  300 (462)
                      |||||||||||+|||||||+||||||++|++|||+||++.+.  ++ ++++|++||+.+ +++|+++|||++|||+||++
T Consensus         1 iNGVPLRRVnQ~yVIATSTkvDis~v~ip~~~~D~YF~~~~~--~k-~k~~e~~~f~~~-~~k~~~se~rk~dQK~VD~~   76 (108)
T PF01159_consen    1 INGVPLRRVNQAYVIATSTKVDISGVKIPEKIDDAYFKRKKK--KK-KKKGEGDFFAEK-KEKYKVSEQRKADQKAVDAQ   76 (108)
T ss_dssp             SSS--SEEESSCCCEECSCESCHCCHHH-CCTTGSSSCHCCC--CH-HHHHHCHCCHHH-HHCCCCHHHHHHHHHCSHHC
T ss_pred             CCCCcceecccceEEEEeeEEeccccchhhccchHHHHhhhh--cc-ccccHHHHHhcc-cccccCCHHHHHHHHHHHHH
Confidence            799999999999999999999999999999999999998874  33 678899999988 78999999999999999999


Q ss_pred             HHHHhhcCCchhhhhccCCCccccCCCCCCCCC
Q psy2461         301 LLKVIKVHPEKKILLSYPPWGWINTRDFNQKKL  333 (462)
Q Consensus       301 LL~~IKkvp~~K~Lk~YL~S~FsLt~~fy~~k~  333 (462)
                      ||++||++|+   |++||+|+|+|++|.|||++
T Consensus        77 ll~aIkk~p~---L~~YL~s~FsL~~g~~PH~m  106 (108)
T PF01159_consen   77 LLAAIKKHPE---LKGYLKSRFSLRKGDYPHKM  106 (108)
T ss_dssp             SHCCCCTCCC---THHHHHCCCCHCTTTSSSSS
T ss_pred             HHHHHhcCHH---HHHhhhhheeCCCCCcCccC
Confidence            9999999998   99999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeabacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families includes mammalian ribosomal protein L6 (L6 was previously known as TAX-responsive enhancer element binding protein 107); Caenorhabditis elegans ribosomal protein L6 (R151.3); Saccharomyces cerevisiae (Baker's yeast) ribosomal protein YL16A/YL16B; and Mesembryanthemum crystallinum (Common ice plant) ribosomal protein YL16-like. These proteins have 175 (yeast) to 287 (mammalian) amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A18_E 4A1D_E 4A19_E 4A1B_E 3IZR_G 3O58_F 3O5H_F 3IZS_G.
>KOG1694|consensus Back     alignment and domain information
>COG2163 RPL14A Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00471 60S ribosomal protein L27; Provisional Back     alignment and domain information
>PRK04333 50S ribosomal protein L14e; Validated Back     alignment and domain information
>KOG1694|consensus Back     alignment and domain information
>COG2163 RPL14A Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG3418|consensus Back     alignment and domain information
>PTZ00065 60S ribosomal protein L14; Provisional Back     alignment and domain information
>PTZ00471 60S ribosomal protein L27; Provisional Back     alignment and domain information
>PRK04333 50S ribosomal protein L14e; Validated Back     alignment and domain information
>CHL00141 rpl24 ribosomal protein L24; Validated Back     alignment and domain information
>KOG3418|consensus Back     alignment and domain information
>PRK12281 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated Back     alignment and domain information
>PRK00004 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle Back     alignment and domain information
>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic Back     alignment and domain information
>KOG3421|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query462
3izr_G219 Localization Of The Large Subunit Ribosomal Protein 1e-29
4a18_E191 T.Thermophila 60s Ribosomal Subunit In Complex With 4e-24
3izs_G176 Localization Of The Large Subunit Ribosomal Protein 2e-20
3zf7_v192 High-resolution Cryo-electron Microscopy Structure 4e-14
>pdb|3IZR|G Chain G, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 219 Back     alignment and structure 
Iteration: 1

 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/178 (44%), Positives = 112/178 (62%), Gaps = 9/178 (5%)
Query: 139 GGEKNGKERKVLIRKPKAYYPTKD-KIKKVRGRRPFRKHARRLRSSLKPGTIVILVAGVH 197
           GG     E+   I +PK +YP  D K + V  R+P   H  +LRS++ PGT++IL+AG +
Sbjct: 33  GGALPKAEKPAAIAEPK-FYPADDVKPRTVSTRKP---HPTKLRSTITPGTVLILLAGRY 88
Query: 198 KGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFF 257
            GKR VFLKQL+SGLLL+TGPF +N +P+RRV+Q YVIATST++DIS V V +  +D +F
Sbjct: 89  MGKRVVFLKQLQSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISKVNV-QKFDDKYF 147
Query: 258 RRIKKHNKQPRKGDKRSLFAKRKKRAYKVSKARKVMQKDMDEQLLKVIKVHPEKKILL 315
            R KK   +  +G+   LF   K+    +   +K  QK +D +L+K I   P+ K  L
Sbjct: 148 AREKKTRAKKTEGE---LFESDKEATKNLPDFKKDDQKVIDAELIKAIDAVPDLKNYL 202
>pdb|4A18|E Chain E, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 191 Back     alignment and structure
>pdb|3IZS|G Chain G, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 176 Back     alignment and structure
>pdb|3ZF7|VV Chain v, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 192 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query462
3izc_G176 60S ribosomal protein RPL6 (L6E); eukaryotic ribos 100.0
3iz5_G219 60S ribosomal protein L6 (L6E); eukaryotic ribosom 100.0
4a18_E191 RPL6; ribosome, eukaryotic initiation factor 6, EI 100.0
3izc_G176 60S ribosomal protein RPL6 (L6E); eukaryotic ribos 99.92
4a18_E191 RPL6; ribosome, eukaryotic initiation factor 6, EI 99.89
3iz5_G219 60S ribosomal protein L6 (L6E); eukaryotic ribosom 99.87
2joy_A96 50S ribosomal protein L14E; protein solution struc 99.73
4a18_N144 RPL27, ribosomal protein L22; ribosome, eukaryotic 99.27
3j21_583 50S ribosomal protein L14E; archaea, archaeal, KIN 98.97
3izc_N138 60S ribosomal protein RPL14 (L14E); eukaryotic rib 98.74
2joy_A96 50S ribosomal protein L14E; protein solution struc 98.65
3izc_a136 60S ribosomal protein RPL27 (L27E); eukaryotic rib 98.62
3iz5_a136 60S ribosomal protein L27 (L27E); eukaryotic ribos 98.52
3iz5_N134 60S ribosomal protein L14 (L14E); eukaryotic ribos 98.22
4a18_F126 RPL14; ribosome, eukaryotic initiation factor 6, E 97.89
4a18_N144 RPL27, ribosomal protein L22; ribosome, eukaryotic 97.7
3izc_a136 60S ribosomal protein RPL27 (L27E); eukaryotic rib 97.22
3iz5_a136 60S ribosomal protein L27 (L27E); eukaryotic ribos 97.14
3j21_583 50S ribosomal protein L14E; archaea, archaeal, KIN 96.3
3izc_N138 60S ribosomal protein RPL14 (L14E); eukaryotic rib 95.74
2zjr_R115 50S ribosomal protein L24; ribosome, large ribosom 93.83
3iz5_N134 60S ribosomal protein L14 (L14E); eukaryotic ribos 93.05
3r8s_U102 50S ribosomal protein L24; protein biosynthesis, R 91.31
3v2d_Y110 50S ribosomal protein L24; ribosome associated inh 90.87
2zkr_t145 60S ribosomal protein L26; protein-RNA complex, 60 88.83
4a18_F126 RPL14; ribosome, eukaryotic initiation factor 6, E 88.46
1vq8_T120 50S ribosomal protein L24P; ribosome 50S, protein- 88.34
2ftc_N96 Mitochondrial ribosomal protein L24; mitochondrial 88.16
3j21_U121 50S ribosomal protein L24P; archaea, archaeal, KIN 86.54
3u5e_Y127 L33, YL33, 60S ribosomal protein L26-A; translatio 84.81
4a17_S135 RPL26, 60S ribosomal protein L21; eukaryotic ribos 81.25
3iz5_Y150 60S ribosomal protein L26 (L24P); eukaryotic ribos 80.51
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E Back     alignment and structure
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E Back     alignment and structure
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A Back     alignment and structure
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N Back     alignment and structure
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A Back     alignment and structure
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7 Back     alignment and structure
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N Back     alignment and structure
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V Back     alignment and structure
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ... Back     alignment and structure
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ... Back     alignment and structure
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7 Back     alignment and structure
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ... Back     alignment and structure
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N Back     alignment and structure
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U Back     alignment and structure
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 462
d2joya196 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolob 4e-20
d2joya196 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolob 7e-06
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]} Length = 96 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L14e
domain: Ribosomal protein L14e
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 82.8 bits (205), Expect = 4e-20
 Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 11/99 (11%)

Query: 183 SLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLD 242
           +++ G I + V G   G + V +  ++   +LVTGP  +  +  RRV+  ++  T  ++D
Sbjct: 3   AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKID 62

Query: 243 ISGVKVPEAANDHFFRRIKKHNKQPRKGDKRSLFAKRKK 281
           I      + A+D   ++  +      + +      ++ K
Sbjct: 63  I-----QKGASDEEVKKKLE------ESNLTEYMKEKIK 90
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]} Length = 96 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query462
d2joya196 Ribosomal protein L14e {Sulfolobus solfataricus [T 99.8
d2joya196 Ribosomal protein L14e {Sulfolobus solfataricus [T 98.82
d2gycs199 Ribosomal proteins L24 (L24p) {Escherichia coli [T 86.05
d1vqot1119 Ribosomal proteins L24 (L24p) {Archaeon Haloarcula 85.79
d2zjrr1110 Ribosomal proteins L24 (L24p) {Deinococcus radiodu 84.44
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L14e
domain: Ribosomal protein L14e
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.80  E-value=1.3e-20  Score=157.03  Aligned_cols=75  Identities=25%  Similarity=0.436  Sum_probs=69.9

Q ss_pred             cCcCCCcEEEEecceecCceEEEEEeecCceEEEeccccccCCcceeeccceEEEcceeeecCCcccCCccChhhhhhhh
Q psy2461         182 SSLKPGTIVILVAGVHKGKRGVFLKQLESGLLLVTGPFALNAMPLRRVHQNYVIATSTQLDISGVKVPEAANDHFFRRIK  261 (462)
Q Consensus       182 sSItPGTVLIlLaGrhrGKRVVfLKQL~SGLLLVTGPfklNGVPLRRVnQryVIATSTKVDISgVkip~~ltDaYFkkkK  261 (462)
                      +++++|+|+|+++|+|+||+||+|+++++|++||+||+.+||||++|+|++|+++|+++|||     |...+++++++.-
T Consensus         2 ~~VevGrV~ii~~G~~~GK~~vIvdiid~~rvLVdGP~~~tgV~r~~in~k~l~lT~~~i~i-----~~~a~~~~v~ka~   76 (96)
T d2joya1           2 PAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDI-----QKGASDEEVKKKL   76 (96)
T ss_dssp             CSSSTTEEEECSSSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCEEEEEECCC-----CSSCCHHHHHHHH
T ss_pred             CceeccEEEEEeecCCCCCEEEEEEEecCCeEEEecccccCCcccEEEchHHEEeccEEEEc-----cCCCCcHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999875     5788999997543
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure