Psyllid ID: psy2476

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEcccccHHHccccccccccHHcccccHHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccEEEEEccccc
Coil and Loop (DISEMBL)
makntsssafrkidvdqynednykeeeqgevpqlgagvdeSEILSLLNQGKHQDALKTVlknaplgsknqhvKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGfeipsekssshlLTWHEKVFAIGGLGSIVRVLTDSKR
Flexible Loop (DISEMBL)
makntsssafrkidvdqyNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVLLAIkssqmdetvsNLDQDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR
Low Complexity Region (SEG)
MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR
Disordered region (IsUnstruct)
*************************************************************************DSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGLGSIVRVL*****
Disordered Region (DISOPRED)
*****SSSAFRKIDVDQYNEDNYKE*************************KHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVLLAIKS*Q****V*NLDQDLLDTLMKYIYKGFEI*****SSHLLTWHEKVFAIGGLGSIVRVLTDS**
Disordered Region (DISEMBL)
********AFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR
Disordered Region (DISPRO)
********AFRKIDVDQYNEDNYKEEE***VPQLGAGVDESEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGLGSIVRVLTD***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
Q4KLF8	151	Actin-related protein 2/3	yes	N/A	0.980	0.980	0.536	5e-38
Q5R516	151	Actin-related protein 2/3	yes	N/A	0.980	0.980	0.536	5e-38
O15511	151	Actin-related protein 2/3	yes	N/A	0.980	0.980	0.536	5e-38
Q9CPW4	151	Actin-related protein 2/3	yes	N/A	0.980	0.980	0.536	7e-38
Q3SYX9	151	Actin-related protein 2/3	yes	N/A	0.980	0.980	0.529	4e-37
A1L108	153	Actin-related protein 2/3	no	N/A	0.993	0.980	0.483	3e-36
Q5R4M1	153	Actin-related protein 2/3	no	N/A	0.993	0.980	0.483	2e-35
Q9BPX5	153	Actin-related protein 2/3	no	N/A	0.993	0.980	0.483	2e-35
Q5E963	153	Actin-related protein 2/3	no	N/A	0.993	0.980	0.483	1e-34
Q9D898	153	Actin-related protein 2/3	no	N/A	0.993	0.980	0.476	4e-34

>sp|Q4KLF8|ARPC5_RAT Actin-related protein 2/3 complex subunit 5 OS=Rattus norvegicus GN=Arpc5 PE=1 SV=3

 Score =  156 bits (394), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 81/151 (53%), Positives = 109/151 (72%), Gaps = 3/151 (1%)

Query: 1   MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
           M+KNT SSA FRK+DVD+Y+E+ + +EE G   Q  AG DE E+ S L QG    AL+  
Sbjct: 1   MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58

Query: 60  LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
           LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct: 59  LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
           + SS+ LL WHEK  A GG+GSIVRVLT  K
Sbjct: 119 DNSSAMLLQWHEKALAAGGVGSIVRVLTARK 149

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.
Rattus norvegicus (taxid: 10116)

>sp|Q5R516|ARPC5_PONAB Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii GN=ARPC5 PE=2 SV=3

 Score =  156 bits (394), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 81/151 (53%), Positives = 109/151 (72%), Gaps = 3/151 (1%)

Query: 1   MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
           M+KNT SSA FRK+DVD+Y+E+ + +EE G   Q  AG DE E+ S L QG    AL+  
Sbjct: 1   MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58

Query: 60  LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
           LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct: 59  LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
           + SS+ LL WHEK  A GG+GSIVRVLT  K
Sbjct: 119 DNSSAMLLQWHEKALAAGGVGSIVRVLTARK 149

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Pongo abelii (taxid: 9601)

>sp|O15511|ARPC5_HUMAN Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5 PE=1 SV=3

 Score =  156 bits (394), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 81/151 (53%), Positives = 109/151 (72%), Gaps = 3/151 (1%)

Query: 1   MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
           M+KNT SSA FRK+DVD+Y+E+ + +EE G   Q  AG DE E+ S L QG    AL+  
Sbjct: 1   MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58

Query: 60  LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
           LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct: 59  LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
           + SS+ LL WHEK  A GG+GSIVRVLT  K
Sbjct: 119 DNSSAMLLQWHEKALAAGGVGSIVRVLTARK 149

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Homo sapiens (taxid: 9606)

>sp|Q9CPW4|ARPC5_MOUSE Actin-related protein 2/3 complex subunit 5 OS=Mus musculus GN=Arpc5 PE=2 SV=3

 Score =  155 bits (392), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 81/151 (53%), Positives = 109/151 (72%), Gaps = 3/151 (1%)

Query: 1   MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
           M+KNT SSA FRK+DVD+Y+E+ + +EE G   Q  AG DE E+ S L QG    AL+  
Sbjct: 1   MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58

Query: 60  LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
           LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct: 59  LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
           + SS+ LL WHEK  A GG+GSIVRVLT  K
Sbjct: 119 DNSSAVLLQWHEKALAAGGVGSIVRVLTARK 149

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Mus musculus (taxid: 10090)

>sp|Q3SYX9|ARPC5_BOVIN Actin-related protein 2/3 complex subunit 5 OS=Bos taurus GN=ARPC5 PE=1 SV=3

 Score =  153 bits (386), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 80/151 (52%), Positives = 108/151 (71%), Gaps = 3/151 (1%)

Query: 1   MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
           M+KNT SSA FRK+DV +Y+E+ + +EE G   Q  AG DE E+ S L QG    AL+  
Sbjct: 1   MSKNTVSSARFRKVDVGEYDENKFVDEEDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58

Query: 60  LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
           LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct: 59  LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
           + SS+ LL WHEK  A GG+GSIVRVLT  K
Sbjct: 119 DNSSAVLLQWHEKALAAGGVGSIVRVLTARK 149

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Bos taurus (taxid: 9913)

>sp|A1L108|ARP5L_RAT Actin-related protein 2/3 complex subunit 5-like protein OS=Rattus norvegicus GN=Arpc5l PE=1 SV=2

 Score =  150 bits (379), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/151 (48%), Positives = 103/151 (68%), Gaps = 1/151 (0%)

Query: 1   MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLG-AGVDESEILSLLNQGKHQDALKTV 59
           MA+NT SS FR++D+D+++E+ + +E +      G  G D  E+  LL QG    A    
Sbjct: 1   MARNTLSSRFRRVDIDEFDENKFVDEHEEAAAASGEPGPDPCEVDGLLRQGDMLRAFHAA 60

Query: 60  LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
           L+N+P+ +KNQ VK+ A  + LKVL   KSS++++ V +LD++ +D LMKYIYKGFE P+
Sbjct: 61  LRNSPINTKNQAVKERAQGIVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT 120

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
           E SS+ LL WHEK  A+GGLGSI+RVLT  K
Sbjct: 121 ENSSAVLLQWHEKALAVGGLGSIIRVLTARK 151

May function as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Rattus norvegicus (taxid: 10116)

>sp|Q5R4M1|ARP5L_PONAB Actin-related protein 2/3 complex subunit 5-like protein OS=Pongo abelii GN=ARPC5L PE=2 SV=1

 Score =  147 bits (372), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/151 (48%), Positives = 104/151 (68%), Gaps = 1/151 (0%)

Query: 1   MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLG-AGVDESEILSLLNQGKHQDALKTV 59
           MA+NT SS FR++D+D+++E+ + +E++         G D SE+  LL QG    A    
Sbjct: 1   MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHAA 60

Query: 60  LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
           L+N+P+ +KNQ VK+ A  + LKVL   KSS++++ V +LD++ +D LMKYIYKGFE P+
Sbjct: 61  LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPT 120

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
           E SS+ LL WHEK  A+GGLGSI+RVLT  K
Sbjct: 121 ENSSAVLLQWHEKALAVGGLGSIIRVLTARK 151

May function as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Pongo abelii (taxid: 9601)

>sp|Q9BPX5|ARP5L_HUMAN Actin-related protein 2/3 complex subunit 5-like protein OS=Homo sapiens GN=ARPC5L PE=1 SV=1

 Score =  147 bits (372), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/151 (48%), Positives = 104/151 (68%), Gaps = 1/151 (0%)

Query: 1   MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLG-AGVDESEILSLLNQGKHQDALKTV 59
           MA+NT SS FR++D+D+++E+ + +E++         G D SE+  LL QG    A    
Sbjct: 1   MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHAA 60

Query: 60  LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
           L+N+P+ +KNQ VK+ A  + LKVL   KSS++++ V +LD++ +D LMKYIYKGFE P+
Sbjct: 61  LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPT 120

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
           E SS+ LL WHEK  A+GGLGSI+RVLT  K
Sbjct: 121 ENSSAVLLQWHEKALAVGGLGSIIRVLTARK 151

May function as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Homo sapiens (taxid: 9606)

>sp|Q5E963|ARP5L_BOVIN Actin-related protein 2/3 complex subunit 5-like protein OS=Bos taurus GN=ARPC5L PE=2 SV=1

 Score =  145 bits (366), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/151 (48%), Positives = 104/151 (68%), Gaps = 1/151 (0%)

Query: 1   MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGV-DESEILSLLNQGKHQDALKTV 59
           MA+NT SS FR++D+D+++E+ + +E++      G    D SE+  LL QG    A    
Sbjct: 1   MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAGEPGPDPSEVDGLLRQGDMLRAFHAA 60

Query: 60  LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
           L+N+P+ +KNQ VK+ A  + LKVL   KSS++++ V +LD++ +D LMKYIYKGFE P+
Sbjct: 61  LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT 120

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
           E SS+ LL WHEK  A+GGLGSI+RVLT  K
Sbjct: 121 ENSSAVLLQWHEKALAVGGLGSIIRVLTARK 151

May function as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Bos taurus (taxid: 9913)

>sp|Q9D898|ARP5L_MOUSE Actin-related protein 2/3 complex subunit 5-like protein OS=Mus musculus GN=Arpc5l PE=1 SV=1

 Score =  143 bits (361), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 102/151 (67%), Gaps = 1/151 (0%)

Query: 1   MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGV-DESEILSLLNQGKHQDALKTV 59
           MA+NT SS FR++D+D+++E+ + +E +      G    D  E+  LL QG    A    
Sbjct: 1   MARNTLSSRFRRVDIDEFDENKFVDEHEEAAAAAGEPGPDPCEVDGLLRQGDMLRAFHAA 60

Query: 60  LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
           L+N+P+ +KNQ VK+ A  + LKVL   KSS++++ V +LD++ +D LMKYIYKGFE P+
Sbjct: 61  LRNSPINTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT 120

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
           E SS+ LL WHEK  A+GGLGSI+RVLT  K
Sbjct: 121 ENSSAVLLQWHEKALAVGGLGSIIRVLTARK 151

May function as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
321476901	152	hypothetical protein DAPPUDRAFT_305421 [	1.0	0.993	0.675	7e-54
114864933	153	Arp2/3 complex subunit ARPC5 [Anopheles	1.0	0.986	0.703	3e-53
157120584	153	arp2/3 complex 16 kd subunit (P16-arc) [	1.0	0.986	0.697	3e-53
242007547	167	arp2/3 complex 16 kD subunit, putative [	1.0	0.904	0.688	1e-51
19920586	151	Actin-related protein 2/3 complex, subun	0.986	0.986	0.671	1e-51
195342023	151	GM18347 [Drosophila sechellia] gi|195470	0.986	0.986	0.671	1e-51
195437284	151	GK24566 [Drosophila willistoni] gi|19416	0.986	0.986	0.664	1e-51
193664443	151	PREDICTED: actin-related protein 2/3 com	0.993	0.993	0.662	3e-51
289742349	150	actin-related protein ARP2/3 complex sub	0.980	0.986	0.690	6e-51
194854840	151	GG24865 [Drosophila erecta] gi|190660301	0.986	0.986	0.664	8e-51

>gi|321476901|gb|EFX87860.1| hypothetical protein DAPPUDRAFT_305421 [Daphnia pulex]

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 102/151 (67%), Positives = 122/151 (80%)

Query: 1   MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVL 60
           MAKNTSSSAFRKIDVDQYNEDNYKE+E GE      G DE EI + LNQGK  +ALKTVL
Sbjct: 1   MAKNTSSSAFRKIDVDQYNEDNYKEDECGESQSPPVGPDEKEITNFLNQGKSVEALKTVL 60

Query: 61  KNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSE 120
           +NAP+ S+NQ VKD+ALN+ ++VLL++KS+Q++E V+ LD+D LD LMKYIY+GFE PSE
Sbjct: 61  RNAPISSRNQMVKDAALNIVMQVLLSVKSTQIEEAVNALDRDQLDILMKYIYRGFETPSE 120

Query: 121 KSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR 151
            SS  LL WHEKV A+ G+G IVRVLTD KR
Sbjct: 121 GSSGQLLAWHEKVHAVAGVGCIVRVLTDKKR 151

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114864933|gb|ABI83786.1| Arp2/3 complex subunit ARPC5 [Anopheles funestus]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 107/152 (70%), Positives = 125/152 (82%), Gaps = 1/152 (0%)

Query: 1   MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVL 60
           MAKNTSSSAFRKIDVDQYNEDN+KE++  +        DE+EI SLLNQG++ DALKTVL
Sbjct: 1   MAKNTSSSAFRKIDVDQYNEDNFKEDDADQASSGMIVPDEAEINSLLNQGRNIDALKTVL 60

Query: 61  KNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQ-DLLDTLMKYIYKGFEIPS 119
           +NAPL  KNQ VKD+AL+LTL+VLL+IKSSQ+D  +  LD  +L D LMKYIY+GFEIPS
Sbjct: 61  QNAPLMCKNQQVKDNALSLTLRVLLSIKSSQIDAAIEALDDPELCDVLMKYIYRGFEIPS 120

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR 151
           E SS HLLTWHEKVFA GG+GSIVRVL+DS R
Sbjct: 121 EGSSGHLLTWHEKVFAKGGVGSIVRVLSDSAR 152

Source: Anopheles funestus

Species: Anopheles funestus

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157120584|ref|XP_001659673.1| arp2/3 complex 16 kd subunit (P16-arc) [Aedes aegypti] gi|108874879|gb|EAT39104.1| AAEL009059-PA [Aedes aegypti]

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 106/152 (69%), Positives = 125/152 (82%), Gaps = 1/152 (0%)

Query: 1   MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVL 60
           MAKNTSSSAFRKIDVDQYNEDN++E++  +        DE+EI +LLNQG++ DALK VL
Sbjct: 1   MAKNTSSSAFRKIDVDQYNEDNFREDDADQASSGMIVPDENEITTLLNQGRNIDALKVVL 60

Query: 61  KNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQ-DLLDTLMKYIYKGFEIPS 119
           +NAPL  KNQ VKD+ALNLTLKVLL+IKSSQ+D  + +LD  +L D LMKYIY+GFEIPS
Sbjct: 61  QNAPLLCKNQQVKDNALNLTLKVLLSIKSSQIDAAIESLDDPELCDVLMKYIYRGFEIPS 120

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR 151
           E SS HLLTWHEKVFA GG+GSIVRVL+DS R
Sbjct: 121 EGSSGHLLTWHEKVFAKGGVGSIVRVLSDSAR 152

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007547|ref|XP_002424601.1| arp2/3 complex 16 kD subunit, putative [Pediculus humanus corporis] gi|212508044|gb|EEB11863.1| arp2/3 complex 16 kD subunit, putative [Pediculus humanus corporis]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 127/151 (84%)

Query: 1   MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVL 60
           MAKNT SSAFRKIDVDQYNEDN+KE++Q E+     G DE E+  +++QGK+ +AL+TVL
Sbjct: 1   MAKNTLSSAFRKIDVDQYNEDNFKEDDQNEMQSSPVGPDECEVTQMISQGKYFEALRTVL 60

Query: 61  KNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSE 120
            NAPLGSK+Q +K++A N+TLKVL++IK+SQMDE +S LD DLLD LMKY+Y+GFEIPSE
Sbjct: 61  SNAPLGSKSQQIKENAFNITLKVLMSIKASQMDEIISLLDTDLLDILMKYVYRGFEIPSE 120

Query: 121 KSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR 151
            SS HLL WHEKVFA  G+GSIVRVLTDSKR
Sbjct: 121 GSSGHLLVWHEKVFAAAGVGSIVRVLTDSKR 151

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19920586|ref|NP_608693.1| Actin-related protein 2/3 complex, subunit 5, isoform A [Drosophila melanogaster] gi|442625494|ref|NP_001259945.1| Actin-related protein 2/3 complex, subunit 5, isoform B [Drosophila melanogaster] gi|7295938|gb|AAF51237.1| Actin-related protein 2/3 complex, subunit 5, isoform A [Drosophila melanogaster] gi|19528603|gb|AAL90416.1| RH48239p [Drosophila melanogaster] gi|220949340|gb|ACL87213.1| p16-ARC-PA [synthetic construct] gi|220958512|gb|ACL91799.1| p16-ARC-PA [synthetic construct] gi|440213211|gb|AGB92482.1| Actin-related protein 2/3 complex, subunit 5, isoform B [Drosophila melanogaster]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/152 (67%), Positives = 123/152 (80%), Gaps = 3/152 (1%)

Query: 1   MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVL 60
           MAKNTSS+AFRKIDVDQYNEDN++E++   V    AG DESEI +LL QGK  +AL + L
Sbjct: 1   MAKNTSSNAFRKIDVDQYNEDNFREDDG--VESAAAGPDESEITTLLTQGKSVEALLSAL 58

Query: 61  KNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQ-DLLDTLMKYIYKGFEIPS 119
           +NAPL  KNQ+VKD ALN+TL+VLL+IKS+QMD+ +  LDQ DL+D LMKYIY+GFEIPS
Sbjct: 59  QNAPLRCKNQNVKDHALNITLRVLLSIKSTQMDQAIDTLDQNDLIDVLMKYIYRGFEIPS 118

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR 151
           E SS HLL WHEK FA GG+G IVRVL+D+ R
Sbjct: 119 EGSSGHLLQWHEKAFAKGGVGCIVRVLSDTNR 150

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195342023|ref|XP_002037601.1| GM18347 [Drosophila sechellia] gi|195470807|ref|XP_002087698.1| GE18163 [Drosophila yakuba] gi|195576077|ref|XP_002077903.1| GD23162 [Drosophila simulans] gi|194132451|gb|EDW54019.1| GM18347 [Drosophila sechellia] gi|194173799|gb|EDW87410.1| GE18163 [Drosophila yakuba] gi|194189912|gb|EDX03488.1| GD23162 [Drosophila simulans]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/152 (67%), Positives = 123/152 (80%), Gaps = 3/152 (1%)

Query: 1   MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVL 60
           MAKNTSS+AFRKIDVDQYNEDN++E++   V    AG DESEI +LL QGK  +AL + L
Sbjct: 1   MAKNTSSNAFRKIDVDQYNEDNFREDDG--VDSAAAGPDESEITTLLTQGKSVEALLSAL 58

Query: 61  KNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQ-DLLDTLMKYIYKGFEIPS 119
           +NAPL  KNQ+VKD ALN+TL+VLL+IKS+QMD+ +  LDQ DL+D LMKYIY+GFEIPS
Sbjct: 59  QNAPLRCKNQNVKDHALNITLRVLLSIKSTQMDQAIDTLDQNDLIDVLMKYIYRGFEIPS 118

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR 151
           E SS HLL WHEK FA GG+G IVRVL+D+ R
Sbjct: 119 EGSSGHLLQWHEKAFAKGGVGCIVRVLSDTNR 150

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195437284|ref|XP_002066570.1| GK24566 [Drosophila willistoni] gi|194162655|gb|EDW77556.1| GK24566 [Drosophila willistoni]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/152 (66%), Positives = 123/152 (80%), Gaps = 3/152 (1%)

Query: 1   MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVL 60
           MAKNTSSSAFRKIDVDQYNEDN++E++   V    AG DE+EI  LL QGK  +AL + L
Sbjct: 1   MAKNTSSSAFRKIDVDQYNEDNFREDDG--VDSAAAGPDENEITGLLTQGKAVEALLSAL 58

Query: 61  KNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQ-DLLDTLMKYIYKGFEIPS 119
           +NAPL  KNQHVKD ALN+TL+VLL+IKS+QMD+ + ++DQ DL+D LMKYIY+GFEIPS
Sbjct: 59  QNAPLRCKNQHVKDHALNITLRVLLSIKSTQMDQAIDSIDQNDLIDVLMKYIYRGFEIPS 118

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR 151
           E SS HLL WHEK +A GG+G IVRVL+D+ R
Sbjct: 119 EGSSGHLLQWHEKAYAKGGVGCIVRVLSDTNR 150

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193664443|ref|XP_001950711.1| PREDICTED: actin-related protein 2/3 complex subunit 5-like protein-like [Acyrthosiphon pisum]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/151 (66%), Positives = 122/151 (80%), Gaps = 1/151 (0%)

Query: 1   MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVL 60
           M++NT SSAFRKIDVDQ+NE N+KE+EQ E     A  DESEI +++NQG+  DALK+ L
Sbjct: 1   MSENTRSSAFRKIDVDQFNE-NFKEDEQPENQSTTAIPDESEITTMINQGRFADALKSAL 59

Query: 61  KNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSE 120
           KNAPLGSKNQ ++D+ALN+ +KVLLA K SQ+DE V+ LD D++D LMKYIYKGFE  +E
Sbjct: 60  KNAPLGSKNQQLRDNALNVVMKVLLATKLSQIDEVVAQLDVDMVDILMKYIYKGFEKSTE 119

Query: 121 KSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR 151
           K SSHLL WHEK +AIGG GSI+RVLTD KR
Sbjct: 120 KKSSHLLMWHEKAYAIGGAGSIIRVLTDRKR 150

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289742349|gb|ADD19922.1| actin-related protein ARP2/3 complex subunit ARPC5 [Glossina morsitans morsitans]

 Score =  205 bits (521), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 105/152 (69%), Positives = 120/152 (78%), Gaps = 4/152 (2%)

Query: 1   MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVL 60
           MAKNTSSSAFRKIDVDQYNEDN+KE+E        +G DE+EI +LL QGK  +AL TVL
Sbjct: 1   MAKNTSSSAFRKIDVDQYNEDNFKEDEADTAV---SGPDENEITALLTQGKSVEALITVL 57

Query: 61  KNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQ-DLLDTLMKYIYKGFEIPS 119
           +NAPL  K QHVKD AL LT+ VLL+IKSSQ+D+ V  L+Q DLLD LMKYIY+GFEIPS
Sbjct: 58  QNAPLRCKQQHVKDHALTLTINVLLSIKSSQIDQAVEALEQNDLLDVLMKYIYRGFEIPS 117

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR 151
           E SS HLL WHEKVFA GG+G IVRVL+D  R
Sbjct: 118 EGSSGHLLQWHEKVFAKGGVGCIVRVLSDRNR 149

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194854840|ref|XP_001968434.1| GG24865 [Drosophila erecta] gi|190660301|gb|EDV57493.1| GG24865 [Drosophila erecta]

 Score =  204 bits (520), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 101/152 (66%), Positives = 122/152 (80%), Gaps = 3/152 (1%)

Query: 1   MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVL 60
           MAKNTSS+AFRKIDVDQYNEDN++E++   V    AG DE EI +LL QGK  +AL + L
Sbjct: 1   MAKNTSSNAFRKIDVDQYNEDNFREDDG--VDSAAAGPDEIEITTLLTQGKSVEALLSAL 58

Query: 61  KNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQ-DLLDTLMKYIYKGFEIPS 119
           +NAPL  KNQ+VKD ALN+TL+VLL+IKS+QMD+ +  LDQ DL+D LMKYIY+GFEIPS
Sbjct: 59  QNAPLRCKNQNVKDHALNITLRVLLSIKSTQMDQAIDTLDQNDLIDVLMKYIYRGFEIPS 118

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR 151
           E SS HLL WHEK FA GG+G IVRVL+D+ R
Sbjct: 119 EGSSGHLLQWHEKAFAKGGVGCIVRVLSDTNR 150

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
FB|FBgn0031437	151	Arpc5 "Actin-related protein 2	0.986	0.986	0.677	1.1e-48
ZFIN|ZDB-GENE-040120-7	150	arpc5b "actin related protein	0.980	0.986	0.546	3e-37
UNIPROTKB|O15511	151	ARPC5 "Actin-related protein 2	0.980	0.980	0.536	7.2e-36
UNIPROTKB|B5APV0	151	ARPC5 "Actin-related protein 2	0.980	0.980	0.536	7.2e-36
RGD|1311791	151	Arpc5 "actin related protein 2	0.980	0.980	0.536	7.2e-36
UNIPROTKB|Q4KLF8	151	Arpc5 "Actin-related protein 2	0.980	0.980	0.536	7.2e-36
UNIPROTKB|G3MXC8	151	ARPC5 "Actin-related protein 2	0.980	0.980	0.536	9.2e-36
MGI|MGI:1915021	151	Arpc5 "actin related protein 2	0.980	0.980	0.536	9.2e-36
UNIPROTKB|Q3SYX9	151	ARPC5 "Actin-related protein 2	0.980	0.980	0.529	5.1e-35
ZFIN|ZDB-GENE-030131-8448	150	arpc5a "actin related protein	0.980	0.986	0.526	8.3e-35

FB|FBgn0031437 Arpc5 "Actin-related protein 2/3 complex, subunit 5" [Drosophila melanogaster (taxid:7227)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 103/152 (67%), Positives = 124/152 (81%)

Query:     1 MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVL 60
             MAKNTSS+AFRKIDVDQYNEDN++E++ G V    AG DESEI +LL QGK  +AL + L
Sbjct:     1 MAKNTSSNAFRKIDVDQYNEDNFREDD-G-VESAAAGPDESEITTLLTQGKSVEALLSAL 58

Query:    61 KNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQ-DLLDTLMKYIYKGFEIPS 119
             +NAPL  KNQ+VKD ALN+TL+VLL+IKS+QMD+ +  LDQ DL+D LMKYIY+GFEIPS
Sbjct:    59 QNAPLRCKNQNVKDHALNITLRVLLSIKSTQMDQAIDTLDQNDLIDVLMKYIYRGFEIPS 118

Query:   120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR 151
             E SS HLL WHEK FA GG+G IVRVL+D+ R
Sbjct:   119 EGSSGHLLQWHEKAFAKGGVGCIVRVLSDTNR 150

GO:0003779 "actin binding" evidence=ISS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=ISS

GO:0005885 "Arp2/3 protein complex" evidence=ISS

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0030027 "lamellipodium" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=IMP

ZFIN|ZDB-GENE-040120-7 arpc5b "actin related protein 2/3 complex, subunit 5B" [Danio rerio (taxid:7955)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 82/150 (54%), Positives = 109/150 (72%)

Query:     1 MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVL 60
             M+KNT S  FRK+DVD+Y+E+ + +EE+G   QLG   DE+E+ SL+ QG    AL+ VL
Sbjct:     1 MSKNTVSDRFRKVDVDEYDENKFVDEEEGGENQLGP--DEAEVDSLIRQGNLMGALQAVL 58

Query:    61 KNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSE 120
             KN P+ +KNQ+VKD A  L LKVL + KS+ +++ V +LD++ +D LMKYIYKGFE PSE
Sbjct:    59 KNPPINTKNQNVKDRAEGLVLKVLSSFKSTDIEKGVQSLDKNGVDLLMKYIYKGFERPSE 118

Query:   121 KSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
              SS+ LL WHEK  + GG+G IVRVLT  K
Sbjct:   119 NSSAVLLQWHEKALSAGGVGCIVRVLTARK 148

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|O15511 ARPC5 "Actin-related protein 2/3 complex subunit 5" [Homo sapiens (taxid:9606)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 81/151 (53%), Positives = 109/151 (72%)

Query:     1 MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
             M+KNT SSA FRK+DVD+Y+E+ + +EE G   Q  AG DE E+ S L QG    AL+  
Sbjct:     1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58

Query:    60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
             LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct:    59 LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118

Query:   120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
             + SS+ LL WHEK  A GG+GSIVRVLT  K
Sbjct:   119 DNSSAMLLQWHEKALAAGGVGSIVRVLTARK 149

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=TAS

GO:0005885 "Arp2/3 protein complex" evidence=TAS

UNIPROTKB|B5APV0 ARPC5 "Actin-related protein 2/3 complex subunit 5" [Sus scrofa (taxid:9823)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 81/151 (53%), Positives = 109/151 (72%)

Query:     1 MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
             M+KNT SSA FRK+DVD+Y+E+ + +EE G   Q  AG DE E+ S L QG    AL+  
Sbjct:     1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58

Query:    60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
             LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct:    59 LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118

Query:   120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
             + SS+ LL WHEK  A GG+GSIVRVLT  K
Sbjct:   119 DNSSAMLLQWHEKALAAGGVGSIVRVLTARK 149

GO:0030027 "lamellipodium" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

RGD|1311791 Arpc5 "actin related protein 2/3 complex, subunit 5" [Rattus norvegicus (taxid:10116)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 81/151 (53%), Positives = 109/151 (72%)

Query:     1 MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
             M+KNT SSA FRK+DVD+Y+E+ + +EE G   Q  AG DE E+ S L QG    AL+  
Sbjct:     1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58

Query:    60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
             LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct:    59 LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118

Query:   120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
             + SS+ LL WHEK  A GG+GSIVRVLT  K
Sbjct:   119 DNSSAMLLQWHEKALAAGGVGSIVRVLTARK 149

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA;ISO

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

UNIPROTKB|Q4KLF8 Arpc5 "Actin-related protein 2/3 complex subunit 5" [Rattus norvegicus (taxid:10116)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 81/151 (53%), Positives = 109/151 (72%)

Query:     1 MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
             M+KNT SSA FRK+DVD+Y+E+ + +EE G   Q  AG DE E+ S L QG    AL+  
Sbjct:     1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58

Query:    60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
             LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct:    59 LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118

Query:   120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
             + SS+ LL WHEK  A GG+GSIVRVLT  K
Sbjct:   119 DNSSAMLLQWHEKALAAGGVGSIVRVLTARK 149

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

UNIPROTKB|G3MXC8 ARPC5 "Actin-related protein 2/3 complex subunit 5" [Bos taurus (taxid:9913)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 81/151 (53%), Positives = 109/151 (72%)

Query:     1 MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
             M+KNT SSA FRK+DVD+Y+E+ + +EE G   Q  AG DE E+ S L QG    AL+  
Sbjct:     1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58

Query:    60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
             LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct:    59 LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118

Query:   120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
             + SS+ LL WHEK  A GG+GSIVRVLT  K
Sbjct:   119 DNSSAVLLQWHEKALAAGGVGSIVRVLTARK 149

GO:0030027 "lamellipodium" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

MGI|MGI:1915021 Arpc5 "actin related protein 2/3 complex, subunit 5" [Mus musculus (taxid:10090)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 81/151 (53%), Positives = 109/151 (72%)

Query:     1 MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
             M+KNT SSA FRK+DVD+Y+E+ + +EE G   Q  AG DE E+ S L QG    AL+  
Sbjct:     1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58

Query:    60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
             LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct:    59 LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118

Query:   120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
             + SS+ LL WHEK  A GG+GSIVRVLT  K
Sbjct:   119 DNSSAVLLQWHEKALAAGGVGSIVRVLTARK 149

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=TAS

GO:0030027 "lamellipodium" evidence=IDA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|Q3SYX9 ARPC5 "Actin-related protein 2/3 complex subunit 5" [Bos taurus (taxid:9913)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 80/151 (52%), Positives = 108/151 (71%)

Query:     1 MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
             M+KNT SSA FRK+DV +Y+E+ + +EE G   Q  AG DE E+ S L QG    AL+  
Sbjct:     1 MSKNTVSSARFRKVDVGEYDENKFVDEEDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58

Query:    60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
             LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct:    59 LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118

Query:   120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
             + SS+ LL WHEK  A GG+GSIVRVLT  K
Sbjct:   119 DNSSAVLLQWHEKALAAGGVGSIVRVLTARK 149

GO:0042995 "cell projection" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

ZFIN|ZDB-GENE-030131-8448 arpc5a "actin related protein 2/3 complex, subunit 5A" [Danio rerio (taxid:7955)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 79/150 (52%), Positives = 105/150 (70%)

Query:     1 MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVL 60
             M+KNT S  FRK+DVD+Y+E+ + +EE G   QLG   DE+E+ SL+  G    AL+ VL
Sbjct:     1 MSKNTVSDRFRKVDVDEYDENKFVDEEDGGENQLGP--DEAEVDSLIRSGNLMGALQAVL 58

Query:    61 KNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSE 120
             KN P+ +KNQ+VKD A  L LKVL + K+S +++ V +LD+  +D LMKYIYKGFE PS+
Sbjct:    59 KNPPIHTKNQNVKDRAEGLVLKVLSSFKASDIEKAVQSLDKTGVDLLMKYIYKGFERPSD 118

Query:   121 KSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
              SS+ L  WHEK  + G +GSIVRVLT  K
Sbjct:   119 NSSAILSQWHEKALSRGCVGSIVRVLTAQK 148

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P40518	ARPC5_YEAST	No assigned EC number	0.2567	0.9337	0.9155	yes	N/A
O15511	ARPC5_HUMAN	No assigned EC number	0.5364	0.9801	0.9801	yes	N/A
Q4KLF8	ARPC5_RAT	No assigned EC number	0.5364	0.9801	0.9801	yes	N/A
Q9CPW4	ARPC5_MOUSE	No assigned EC number	0.5364	0.9801	0.9801	yes	N/A
O96626	ARPC5_DICDI	No assigned EC number	0.3693	0.7218	0.7898	yes	N/A
Q10316	ARPC5_SCHPO	No assigned EC number	0.3333	0.9072	0.9013	yes	N/A
Q3SYX9	ARPC5_BOVIN	No assigned EC number	0.5298	0.9801	0.9801	yes	N/A
Q5R516	ARPC5_PONAB	No assigned EC number	0.5364	0.9801	0.9801	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	151
pfam04699	152	pfam04699, P16-Arc, ARP2/3 complex 16 kDa subunit	2e-60

>gnl|CDD|218216 pfam04699, P16-Arc, ARP2/3 complex 16 kDa subunit (p16-Arc)

 Score =  182 bits (465), Expect = 2e-60
 Identities = 64/151 (42%), Positives = 91/151 (60%), Gaps = 7/151 (4%)

Query: 8   SAFRKIDVDQYNEDNYKEEE------QGEVPQLGAGVDESEILSLLNQGKHQDALKTVLK 61
           + FRKID+D  +E+++ + +        EV     G DE ++ SLL+ G  + AL+  L 
Sbjct: 1   TDFRKIDIDALDEESFVDLDKEDLPDTPEVSSADIGPDEQQVRSLLSSGDFEGALQLALS 60

Query: 62  NAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSE- 120
           N P G+ +Q VKD AL   L+VL +IKS+ ++  V +LD +  D LMKY+YKG   PS  
Sbjct: 61  NPPYGTDDQAVKDQALQTVLEVLTSIKSADIENAVKSLDSEQQDVLMKYLYKGMATPSGQ 120

Query: 121 KSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR 151
                LL+WHEK+  + GLGSIVRVLTD + 
Sbjct: 121 SQGGVLLSWHEKLVEVAGLGSIVRVLTDRRT 151

The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices. Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
KOG3380|consensus	152		100.0
PF04699	152	P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc);	100.0
PF08625	141	Utp13: Utp13 specific WD40 associated domain; Inte	96.56
PF04003	110	Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A la	95.79
KOG0291|consensus	893		94.84
PF09384	148	UTP15_C: UTP15 C terminal; InterPro: IPR018983 Thi	94.46
KOG0319|consensus	775		81.03

>KOG3380|consensus

Probab=100.00  E-value=3.1e-65  Score=397.66  Aligned_cols=150  Identities=53%  Similarity=0.838  Sum_probs=142.9

Q ss_pred             CCCccCCCCCccccccCCCCCCCCccccCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q psy2476           1 MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNLT   80 (151)
Q Consensus         1 msknt~~~~~RkIDVD~~d~d~f~~~~~~~~~~~~~~~~~~qvr~ll~~gd~~~ALk~aL~npP~g~~~~~~K~~~~~~V   80 (151)
                      |||||++++|||||||+|||+.|.++++. ...++++|+++|||+||++|+..+||++||.||||++|+|++|++++.+|
T Consensus         1 Ms~nt~~t~~rk~dvd~fd~~~f~~~~~e-~~~a~~gp~~~ev~sll~qg~~~~AL~~aL~~~P~~t~~q~vK~~a~~~v   79 (152)
T KOG3380|consen    1 MSKNTLSTSFRKIDVDEFDEAKFVEEDEE-VESAALGPDEREVRSLLTQGKSLEALQTALLNPPYGTKDQEVKDRALNVV   79 (152)
T ss_pred             CCccchhhccccccccccChhhhcCchhh-hhhhccCCChHHHHHHHHcccHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence            99999999999999999999999998875 34677999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhccHHHHHhccChhhhHHHHHHHHhhcCCCCCc-chhhHHHHHHHHHHhhCCCceEEEeccCCC
Q psy2476          81 LKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEK-SSSHLLTWHEKVFAIGGLGSIVRVLTDSKR  151 (151)
Q Consensus        81 l~vL~s~K~sdI~~~v~~L~~e~~D~LMKYiYkgm~~~~~~-~~~~LL~WheKl~~~~G~G~IvRvltdRkt  151 (151)
                      ++||++||++||+++|++||.++.|+|||||||||+.|++. +|..||.||||+++++|+||||||||||+|
T Consensus        80 ~~vL~~ik~adI~~~v~~Ls~e~~DiLmKYiYkGm~~p~d~~s~~~LL~WHEk~~~~~GvG~IvRvLs~r~~  151 (152)
T KOG3380|consen   80 LKVLTSIKQADIEAAVKKLSTEEIDILMKYIYKGMEIPSDNSSCVSLLQWHEKLVAKSGVGCIVRVLSDRQR  151 (152)
T ss_pred             HHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHhcCCceEEEeecCCcC
Confidence            99999999999999999999999999999999999999765 455599999999999999999999999986

>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation

Probab=100.00  E-value=1.1e-65  Score=402.23  Aligned_cols=143  Identities=50%  Similarity=0.820  Sum_probs=113.7

Q ss_pred             CCCccccccCCCCCCCCccccCC--C-----CCCCCCCCHHHHHHHHhcCCHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q psy2476           8 SAFRKIDVDQYNEDNYKEEEQGE--V-----PQLGAGVDESEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNLT   80 (151)
Q Consensus         8 ~~~RkIDVD~~d~d~f~~~~~~~--~-----~~~~~~~~~~qvr~ll~~gd~~~ALk~aL~npP~g~~~~~~K~~~~~~V   80 (151)
                      ++|||||||+||||+|.+++...  |     ..+.++++++|||++|++||+.+||++||+|||||+++ ++|++++++|
T Consensus         1 ~~fRkiDID~~ded~~~~~~~~~~~p~~~~~~~~~~~~~~~qvr~ll~~g~~~~ALk~aL~npP~~~k~-~~K~~~~~~V   79 (152)
T PF04699_consen    1 EDFRKIDIDAYDEDSFVDEEEEDLDPESPPVSSAEVQPKEQQVRQLLSSGDNEEALKAALENPPYGSKD-AVKDRALQLV   79 (152)
T ss_dssp             -GGGCS-GGGG-TTS-------------------GGGGTHHHHHHHHHCT-HHHHHHHHTSS--TT-S--HHHHHHHHHH
T ss_pred             CCCeeCccccCCCcccccccccccCCCCcccchhhhchhHHHHHHHHhCCCHHHHHHHhccCCCcCCCc-chHHHHHHHH
Confidence            48999999999999997776442  1     25667899999999999999999999999999999999 9999999999


Q ss_pred             HHHHHhhhhccHHHHHhccChhhhHHHHHHHHhhcCCCCCcc-hhhHHHHHHHHHHhhCCCceEEEeccCCC
Q psy2476          81 LKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKS-SSHLLTWHEKVFAIGGLGSIVRVLTDSKR  151 (151)
Q Consensus        81 l~vL~s~K~sdI~~~v~~L~~e~~D~LMKYiYkgm~~~~~~~-~~~LL~WheKl~~~~G~G~IvRvltdRkt  151 (151)
                      ++||++||++||+++|++|+++|+|+|||||||||+.|++++ |++||+||||+++++|+||||||||||||
T Consensus        80 l~vL~s~k~sdI~~~v~~L~~~~~D~LMKYiYkg~~~~~~~s~~~~LL~WheK~~~~~G~G~IvRvltdRkt  151 (152)
T PF04699_consen   80 LEVLTSIKSSDIENAVKSLDSDQQDILMKYIYKGMESPSENSSGGVLLSWHEKLVEVAGVGSIVRVLTDRKT  151 (152)
T ss_dssp             HHHHHCS-GGGHHHHHCCS-HHHHHHHHHHHHHHTTS--TTHH-CHHHHHHHHHHHCCHCHHHHHHCC-SS-
T ss_pred             HHHHHHccHHHHHHHHHhCCHHHHhHHHHHHHHhccCccCccHHHHHHHHHHHHHHHcCCCcEEEEeecCcC
Confidence            999999999999999999999999999999999999998765 49999999999999999999999999997

The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....

>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=96.56  E-value=0.0047  Score=47.96  Aligned_cols=97  Identities=28%  Similarity=0.456  Sum_probs=61.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhc-CCCCCCCChHHHHHHHHHHHHHHH------hhhhccHHHHHhccChhhhHHHHHHHH
Q psy2476          40 ESEILSLLNQGKHQDALKTVLK-NAPLGSKNQHVKDSALNLTLKVLL------AIKSSQMDETVSNLDQDLLDTLMKYIY  112 (151)
Q Consensus        40 ~~qvr~ll~~gd~~~ALk~aL~-npP~g~~~~~~K~~~~~~Vl~vL~------s~K~sdI~~~v~~L~~e~~D~LMKYiY  112 (151)
                      +++..++++.||+.+||+.||+ |=|+.         .+.++-+++.      ++-..+|+++|++|+.++...|++|+=
T Consensus         1 eQ~L~N~l~~~~y~~Al~LAl~L~~P~~---------ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir   71 (141)
T PF08625_consen    1 EQELSNLLRQKDYKEALRLALKLDHPFR---------LLKILKDLLETEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIR   71 (141)
T ss_pred             CchHHHHHHhhhHHHHHHHHHhcCCcHH---------HHHHHHHHHhcccccccchHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4678999999999999999997 33542         2233333331      222356999999999999999999986


Q ss_pred             hhcCCCC-----Ccc-hhhHHHHH-HHHHHhhCCCceEEE
Q psy2476         113 KGFEIPS-----EKS-SSHLLTWH-EKVFAIGGLGSIVRV  145 (151)
Q Consensus       113 kgm~~~~-----~~~-~~~LL~Wh-eKl~~~~G~G~IvRv  145 (151)
                      .=-..+-     +.- ..+|-.|. +++.++.|...++..
T Consensus        72 ~WNTNsr~~~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~  111 (141)
T PF08625_consen   72 DWNTNSRTSHVAQRVLNAILKSHPPEELLKIPGLKEILEA  111 (141)
T ss_pred             HhhcccccHHHHHHHHHHHHHhCCHHHHHccccHHHHHHH
Confidence            4422221     000 12222332 456677777666543

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=95.79  E-value=0.034  Score=39.82  Aligned_cols=61  Identities=23%  Similarity=0.433  Sum_probs=51.7

Q ss_pred             HHHHHHHHhhhhccHHHHHhccChhhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHhhC
Q psy2476          78 NLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGG  138 (151)
Q Consensus        78 ~~Vl~vL~s~K~sdI~~~v~~L~~e~~D~LMKYiYkgm~~~~~~~~~~LL~WheKl~~~~G  138 (151)
                      ..+.+||.++..++|+.+|..|+......|++||-.+|+.........++.|-.-++..-|
T Consensus         4 ~ll~~vl~~~~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~   64 (110)
T PF04003_consen    4 ELLLEVLERIPPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHG   64 (110)
T ss_pred             HHHHHHHhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999884333346888999888776644

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.

>KOG0291|consensus

Probab=94.84  E-value=0.089  Score=51.02  Aligned_cols=86  Identities=19%  Similarity=0.266  Sum_probs=71.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhhhhccHHHHHhccChhhhHHHHHHHHhhcCCCC
Q psy2476          40 ESEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS  119 (151)
Q Consensus        40 ~~qvr~ll~~gd~~~ALk~aL~npP~g~~~~~~K~~~~~~Vl~vL~s~K~sdI~~~v~~L~~e~~D~LMKYiYkgm~~~~  119 (151)
                      ..-|+..|+.+++..||-.+|.=            ..-++|-+||-++-..||+-++++|+..-.+.|||||-+-|+...
T Consensus       725 Pe~v~~al~~qey~~AlvmslRL------------Ne~~lI~evlesvp~~~Ie~V~~~Lp~~y~erll~~l~~~l~~s~  792 (893)
T KOG0291|consen  725 PESVREALREQEYLKALVMSLRL------------NEYKLIKEVLESVPIKDIELVASSLPTAYLERLLKALSRFLENSP  792 (893)
T ss_pred             HHHHHHHHhcchHHHHHHHHHhc------------CHHHHHHHHHHhCChhhhhhhhhcCcHHHHHHHHHHHHHHHhcCc
Confidence            34599999999999999998852            223578899999999999999999999999999999999776532


Q ss_pred             CcchhhHHHHHHHHHHhhCC
Q psy2476         120 EKSSSHLLTWHEKVFAIGGL  139 (151)
Q Consensus       120 ~~~~~~LL~WheKl~~~~G~  139 (151)
                        ---..|.|-..++...|.
T Consensus       793 --HieF~l~W~~~il~~hG~  810 (893)
T KOG0291|consen  793 --HIEFYLRWLRAILTYHGS  810 (893)
T ss_pred             --hHHHHHHHHHHHHHHhhh
Confidence              125568899998888774

>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15)

Probab=94.46  E-value=0.37  Score=37.28  Aligned_cols=91  Identities=18%  Similarity=0.250  Sum_probs=67.9

Q ss_pred             CCCCHHHHHHHHhcCCHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhhhhccHHHHHhccChhhhHHHHHHHHhhc
Q psy2476          36 AGVDESEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGF  115 (151)
Q Consensus        36 ~~~~~~qvr~ll~~gd~~~ALk~aL~npP~g~~~~~~K~~~~~~Vl~vL~s~K~sdI~~~v~~L~~e~~D~LMKYiYkgm  115 (151)
                      ..++-+....+|++.++.+||..||    ...++    ....-+|++.|..=  .-+..++.+.|.+.+--|++||.|-+
T Consensus        18 ~~~kl~~~D~~Lr~F~y~~ALD~aL----~~~~~----p~~~vavl~EL~~R--~~L~~AL~~Rde~~L~piL~Fl~k~i   87 (148)
T PF09384_consen   18 KKKKLSKYDKLLRKFRYKKALDAAL----VKNKS----PEVVVAVLEELIRR--GALRAALAGRDEESLEPILKFLIKNI   87 (148)
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHH----hcCCC----hHHHHHHHHHHHHc--cHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            5667889999999999999999999    11111    22233344444332  46889999999999999999999999


Q ss_pred             CCCCCcchhhHHHHHHHHHHhhC
Q psy2476         116 EIPSEKSSSHLLTWHEKVFAIGG  138 (151)
Q Consensus       116 ~~~~~~~~~~LL~WheKl~~~~G  138 (151)
                      ..|--  +.+|..+-+.++++-+
T Consensus        88 ~~pr~--~~~l~~v~~~ildiY~  108 (148)
T PF09384_consen   88 TDPRY--TRILVDVANIILDIYS  108 (148)
T ss_pred             CCccc--HHHHHHHHHHHHHHHH
Confidence            88743  5788888887777654

This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus

>KOG0319|consensus

Probab=81.03  E-value=3.2  Score=40.32  Aligned_cols=67  Identities=21%  Similarity=0.318  Sum_probs=51.2

Q ss_pred             CHHHHHHHHhcCCHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhhhh-ccHHHHHhccChhhhHHHHHHHHhh
Q psy2476          39 DESEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVLLAIKS-SQMDETVSNLDQDLLDTLMKYIYKG  114 (151)
Q Consensus        39 ~~~qvr~ll~~gd~~~ALk~aL~npP~g~~~~~~K~~~~~~Vl~vL~s~K~-sdI~~~v~~L~~e~~D~LMKYiYkg  114 (151)
                      .++++.++|+.+++..|+-+|+..-         |-..+-.|++.+..=++ .++...|.+|+.||.-.||+|+-+=
T Consensus       637 q~QeL~n~l~~~~~~~A~~LA~tLd---------~P~~~f~vi~~~~r~r~~e~l~~av~~L~~dq~~~Ll~~~~~W  704 (775)
T KOG0319|consen  637 QEQELENLLSQKRYTKAFVLALTLD---------KPHLVFTVINALYRERDPEELGQAVFRLNEDQPEALLQFVVKW  704 (775)
T ss_pred             HHHHHHHHHhhhhhHHHHHhHhhcc---------CchhHHHHHHHHHhcCCcHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence            5788999999999999999999742         22223344444444443 4688999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	151
1k8k_G	151	Crystal Structure Of Arp23 COMPLEX Length = 151		2e-38
3dxk_G	151	Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND IN		4e-38
3dwl_G	152	Crystal Structure Of Fission Yeast Arp2/3 Complex L		9e-16

>pdb|1K8K|G Chain G, Crystal Structure Of Arp23 COMPLEX Length = 151

Iteration: 1
 Score =  154 bits (389), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/151 (52%), Positives = 109/151 (72%), Gaps = 3/151 (1%)
Query: 1   MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
           M+KNT SSA FRK+DVD+Y+E+ + +E+ G   Q  AG DE E+ S L QG    AL+  
Sbjct: 1   MSKNTVSSARFRKVDVDEYDENKFVDEDDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58
Query: 60  LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
           LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct: 59  LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118
Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
           + SS+ LL WHEK  A GG+GSIVRVLT  K
Sbjct: 119 DNSSAVLLQWHEKALAAGGVGSIVRVLTARK 149

>pdb|3DXK|G Chain G, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR Ck0944636 Length = 151

Iteration: 1
 Score =  153 bits (386), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 80/151 (52%), Positives = 108/151 (71%), Gaps = 3/151 (1%)
Query: 1   MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
           M+KNT SSA FRK+DV +Y+E+ + +EE G   Q  AG DE E+ S L QG    AL+  
Sbjct: 1   MSKNTVSSARFRKVDVGEYDENKFVDEEDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58
Query: 60  LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
           LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct: 59  LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118
Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
           + SS+ LL WHEK  A GG+GSIVRVLT  K
Sbjct: 119 DNSSAVLLQWHEKALAAGGVGSIVRVLTARK 149

>pdb|3DWL|G Chain G, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 152

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 7/144 (4%)
Query: 10  FRKIDVDQYNEDNYKEEEQGEV-----PQLGAGVDE--SEILSLLNQGKHQDALKTVLKN 62
           FR +DVD   E    E++   +      Q+ A V +   +  S +  G     LKT+L  
Sbjct: 3   FRTLDVDSITEPVLTEQDIFPIRNETAEQVQAAVSQLIPQARSAIQTGNALQGLKTLLSY 62
Query: 63  APLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKS 122
            P G+  Q V+   LN  + VL  I+++ +   V     + +D ++ +IY+G   P   +
Sbjct: 63  VPYGNDVQEVRTQYLNAFVDVLSNIRAADIPAFVKECSTEEIDNIVNFIYRGLANPQAYN 122
Query: 123 SSHLLTWHEKVFAIGGLGSIVRVL 146
           SS LL WHEKV  I G+G IVRVL
Sbjct: 123 SSVLLNWHEKVVEISGIGCIVRVL 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
1k8k_G	151	P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-	4e-67
3dwl_G	152	Actin-related protein 2/3 complex subunit 5; prope	6e-61

>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G Length = 151

 Score =  199 bits (508), Expect = 4e-67
 Identities = 79/152 (51%), Positives = 108/152 (71%), Gaps = 3/152 (1%)

Query: 1   MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
           M+KNT SSA FRK+DVD+Y+E+ + +E+ G   Q G   DE E+ S L QG    AL+  
Sbjct: 1   MSKNTVSSARFRKVDVDEYDENKFVDEDDGGDGQAGP--DEGEVDSCLRQGNMTAALQAA 58

Query: 60  LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
           LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct: 59  LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR 151
           + SS+ LL WHEK  A GG+GSIVRVLT  K 
Sbjct: 119 DNSSAVLLQWHEKALAAGGVGSIVRVLTARKT 150

>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 152

 Score =  183 bits (467), Expect = 6e-61
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 7/149 (4%)

Query: 10  FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDES-------EILSLLNQGKHQDALKTVLKN 62
           FR +DVD   E    E++   +    A   ++       +  S +  G     LKT+L  
Sbjct: 3   FRTLDVDSITEPVLTEQDIFPIRNETAEQVQAAVSQLIPQARSAIQTGNALQGLKTLLSY 62

Query: 63  APLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKS 122
            P G+  Q V+   LN  + VL  I+++ +   V     + +D ++ +IY+G   P   +
Sbjct: 63  VPYGNDVQEVRTQYLNAFVDVLSNIRAADIPAFVKECSTEEIDNIVNFIYRGLANPQAYN 122

Query: 123 SSHLLTWHEKVFAIGGLGSIVRVLTDSKR 151
           SS LL WHEKV  I G+G IVRVL     
Sbjct: 123 SSVLLNWHEKVVEISGIGCIVRVLNSRPD 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
1k8k_G	151	P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-	100.0
3dwl_G	152	Actin-related protein 2/3 complex subunit 5; prope	100.0

>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G

Probab=100.00  E-value=2.4e-72  Score=438.41  Aligned_cols=149  Identities=52%  Similarity=0.819  Sum_probs=135.2

Q ss_pred             CCCccC-CCCCccccccCCCCCCCCccccCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHhcCCCCCCCChHHHHHHHHH
Q psy2476           1 MAKNTS-SSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNL   79 (151)
Q Consensus         1 msknt~-~~~~RkIDVD~~d~d~f~~~~~~~~~~~~~~~~~~qvr~ll~~gd~~~ALk~aL~npP~g~~~~~~K~~~~~~   79 (151)
                      |||||+ |++|||||||+||||+|.++++.++.  ..+|+++|||+||++||+++||++||+||||++|+|++|++|+++
T Consensus         1 M~knt~~~~~fR~iDVD~~d~d~f~~~~~~~~~--~~~p~~~qv~~lL~~g~~~~ALk~~L~~pP~~~k~q~~K~~~~~~   78 (151)
T 1k8k_G            1 MSKNTVSSARFRKVDVDEYDENKFVDEDDGGDG--QAGPDEGEVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSI   78 (151)
T ss_dssp             --------CGGGTSCGGGGCTTSCCCCCCC------CCCCHHHHHHHHHTTCHHHHHHHHTSSCCSSCSCHHHHHHHHHH
T ss_pred             CCCcccccccCeecccccCCcccCChhhccCCC--CCCCCHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcHHHHHHHHHH
Confidence            999999 99999999999999999999877533  357899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhccHHHHHhccChhhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHhhCCCceEEEeccCCC
Q psy2476          80 TLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR  151 (151)
Q Consensus        80 Vl~vL~s~K~sdI~~~v~~L~~e~~D~LMKYiYkgm~~~~~~~~~~LL~WheKl~~~~G~G~IvRvltdRkt  151 (151)
                      |++||++||++||+++|++|++|++|+|||||||||+.|++++|++||+||||+++++|+||||||||||||
T Consensus        79 Vl~VL~siK~sdI~~~v~~L~~e~~D~LMKYiYkGm~~~~~~~~~~LL~WHEKl~~~~G~G~IvRvltdRrt  150 (151)
T 1k8k_G           79 VLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDNSSAVLLQWHEKALAAGGVGSIVRVLTARKT  150 (151)
T ss_dssp             HHHHHHHSCGGGHHHHHHTSCHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred             HHHHHHHccHHHHHHHHHHhChhhhhHHHHHHHHhhcCcCCCcchHHHHHHHHHHHhcCCCcEEEEeccCcc
Confidence            999999999999999999999999999999999999999988899999999999999999999999999997

>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-66  Score=406.41  Aligned_cols=143  Identities=31%  Similarity=0.512  Sum_probs=108.5

Q ss_pred             CCCccccccCCCCCCCCccccCCC---CCCCCCCC----HHHHHHHHhcCCHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q psy2476           8 SAFRKIDVDQYNEDNYKEEEQGEV---PQLGAGVD----ESEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNLT   80 (151)
Q Consensus         8 ~~~RkIDVD~~d~d~f~~~~~~~~---~~~~~~~~----~~qvr~ll~~gd~~~ALk~aL~npP~g~~~~~~K~~~~~~V   80 (151)
                      ++|||||||+||||+|.++++.++   ..++++++    ++|||+||++||+++||++||+||||++|++++|++|+++|
T Consensus         1 ~~~R~iDID~~d~d~~~~e~l~~~~~~~~~e~~~~~~~~~~qvr~lL~~g~~~~ALk~aL~~pP~~~~~~~~K~~~~~~V   80 (152)
T 3dwl_G            1 MTFRTLDVDSITEPVLTEQDIFPIRNETAEQVQAAVSQLIPQARSAIQTGNALQGLKTLLSYVPYGNDVQEVRTQYLNAF   80 (152)
T ss_dssp             -------------------------------CCCGGGGTHHHHHHHHHHSCCHHHHHHHTSSCCCSCSCHHHHHHHHHHH
T ss_pred             CCCeecccccCCcccCchhhccCCCCCCHHHHHhhhhhhHHHHHHHHHCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence            489999999999999999886663   24566777    99999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhccHHHHHhccChhhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHhhCCCceEEEeccCC
Q psy2476          81 LKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK  150 (151)
Q Consensus        81 l~vL~s~K~sdI~~~v~~L~~e~~D~LMKYiYkgm~~~~~~~~~~LL~WheKl~~~~G~G~IvRvltdRk  150 (151)
                      ++||+|||++||+++|++|+++++|+|||||||||+.|++++|++||+||||+++++|+||||||||||.
T Consensus        81 l~vL~siK~sdI~~~v~~L~~~~~D~LMKYiYkGm~~~~~~~~~~LL~WHEKl~e~~G~G~IvRvltDR~  150 (152)
T 3dwl_G           81 VDVLSNIRAADIPAFVKECSTEEIDNIVNFIYRGLANPQAYNSSVLLNWHEKVVEISGIGCIVRVLNSRP  150 (152)
T ss_dssp             HHHHHTSCGGGHHHHHHHSCHHHHHHHHHHHHHHTTC----CCSHHHHHHHHHHHTTCSHHHHHHTTCC-
T ss_pred             HHHHHHccHHHHHHHHHHhCHHHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHcCCCceEEEecCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	151
d1k8kg_	143	a.118.13.1 (G:) Arp2/3 complex 16 kDa subunit ARPC	2e-66

>d1k8kg_ a.118.13.1 (G:) Arp2/3 complex 16 kDa subunit ARPC5 {Cow (Bos taurus) [TaxId: 9913]} Length = 143

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Arp2/3 complex 16 kDa subunit ARPC5
family: Arp2/3 complex 16 kDa subunit ARPC5
domain: Arp2/3 complex 16 kDa subunit ARPC5
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  196 bits (501), Expect = 2e-66
 Identities = 73/144 (50%), Positives = 102/144 (70%), Gaps = 2/144 (1%)

Query: 8   SAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVLKNAPLGS 67
           + FRK+DVD+Y+E+ + +E+ G   Q  AG DE E+ S L QG    AL+  LKN P+ +
Sbjct: 1   ARFRKVDVDEYDENKFVDEDDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAALKNPPINT 58

Query: 68  KNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLL 127
           K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS+ SS+ LL
Sbjct: 59  KSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDNSSAVLL 118

Query: 128 TWHEKVFAIGGLGSIVRVLTDSKR 151
            WHEK  A GG+GSIVRVLT  K 
Sbjct: 119 QWHEKALAAGGVGSIVRVLTARKT 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d1k8kg_	143	Arp2/3 complex 16 kDa subunit ARPC5 {Cow (Bos taur	100.0

>d1k8kg_ a.118.13.1 (G:) Arp2/3 complex 16 kDa subunit ARPC5 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Arp2/3 complex 16 kDa subunit ARPC5
family: Arp2/3 complex 16 kDa subunit ARPC5
domain: Arp2/3 complex 16 kDa subunit ARPC5
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.5e-69  Score=413.08  Aligned_cols=142  Identities=51%  Similarity=0.815  Sum_probs=134.9

Q ss_pred             CCCccccccCCCCCCCCccccCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhh
Q psy2476           8 SAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVLLAI   87 (151)
Q Consensus         8 ~~~RkIDVD~~d~d~f~~~~~~~~~~~~~~~~~~qvr~ll~~gd~~~ALk~aL~npP~g~~~~~~K~~~~~~Vl~vL~s~   87 (151)
                      .+|||||||+||||+|.++++.++  ..++|+++|||+||++||+++||+++|+|||||+++|++|++++.+|++||++|
T Consensus         1 a~fRkiDVD~~de~~f~~~d~~~~--~~~~p~e~eVrslL~~G~~~~AL~~~L~~pP~~~~~~~~Kd~~~~~vl~VL~si   78 (143)
T d1k8kg_           1 ARFRKVDVDEYDENKFVDEDDGGD--GQAGPDEGEVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISF   78 (143)
T ss_dssp             CGGGTSCGGGGCTTSCCCCCCC------CCCCHHHHHHHHHTTCHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHHHS
T ss_pred             CCCeecccccCCCccCCcccccCC--CCCCCCHHHHHHHHhcCCHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence            379999999999999999887653  347899999999999999999999999999999999999999999999999999


Q ss_pred             hhccHHHHHhccChhhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHhhCCCceEEEeccCCC
Q psy2476          88 KSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR  151 (151)
Q Consensus        88 K~sdI~~~v~~L~~e~~D~LMKYiYkgm~~~~~~~~~~LL~WheKl~~~~G~G~IvRvltdRkt  151 (151)
                      |++||+++|++|+.+++|+|||||||||+.|++++|++||+||||+++++|+||||||||||||
T Consensus        79 K~~dI~~~v~~L~~~~~D~LMKYiYkG~~~p~~~s~~~LL~WHEKl~~~~G~G~IvRvltdRrt  142 (143)
T d1k8kg_          79 KANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDNSSAVLLQWHEKALAAGGVGSIVRVLTARKT  142 (143)
T ss_dssp             CGGGHHHHHHTSCHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred             hHHHHHHHHHhcChHhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcCCccEEEEeccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999997