Psyllid ID: psy2494

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
MVGHDIMEFSALDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTLHCCWERGNLVLPDPKLTISGNEL
cccccccccccccHHHHHHHHHHHHHHHccccccccccccEEEEEccccEEEccccccccccccHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccccHHHHHHHHHHccccccEEEEEEcccccEEEEEEccccHHHcccccccccccccccccccccccc
cccccEEEcccccHHHHHHHHHHHHHHcccEcccccccEEEEEEEccccEEEEEcEccccHHHcEcHHHHHHHHHHHcccccEEEEEEEEccccccccccccHHHHHHHHHHccccccEEEEEEccccEEEEEEEHHHHHHHccccccccccHHccccEEEccccc
mvghdimefsaldpieqNLANLSIqardnaycpysklQVGAAllcqddtiftgcnvenasygmTICAEKTAISKAISEGQTKFKRIAVSailpdsnkfvspcgscrqviaefsspacdiQVLIvksdrsqvglitIDGMYLTLHCCwergnlvlpdpkltisgnel
mvghdimefsaLDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLivksdrsqvGLITIDGMYLTLHCCWERgnlvlpdpkltisgnel
MVGHDIMEFSALDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTLHCCWERGNLVLPDPKLTISGNEL
********FSALDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTLHCCWERGNLVLP***********
*********SALDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTLHCCWER*****************
MVGHDIMEFSALDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTLHCCWERGNLVLPDPKLTISGNEL
****DIMEFSALDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTLHCCWERGNLVLPDPKLTIS****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVGHDIMEFSALDPIEQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTLHCCWERGNLVLPDPKLTISGNEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query166 2.2.26 [Sep-21-2011]
P19079136 Cytidine deaminase OS=Bac yes N/A 0.698 0.852 0.475 2e-25
P56389146 Cytidine deaminase OS=Mus yes N/A 0.638 0.726 0.522 3e-25
Q9S3M0136 Cytidine deaminase OS=Bac N/A N/A 0.650 0.794 0.513 2e-24
P32320146 Cytidine deaminase OS=Hom yes N/A 0.662 0.753 0.486 3e-24
Q54I82147 Probable cytidine deamina yes N/A 0.566 0.639 0.55 7e-24
Q9KD53132 Cytidine deaminase OS=Bac yes N/A 0.566 0.712 0.546 6e-23
Q09190133 Putative cytidine deamina yes N/A 0.548 0.684 0.505 3e-17
P47718133 Cytidine deaminase OS=Myc N/A N/A 0.578 0.721 0.421 3e-14
Q06549142 Cytidine deaminase OS=Sac yes N/A 0.680 0.795 0.405 3e-14
O53367133 Cytidine deaminase OS=Myc yes N/A 0.536 0.669 0.423 1e-13
>sp|P19079|CDD_BACSU Cytidine deaminase OS=Bacillus subtilis (strain 168) GN=cdd PE=1 SV=1 Back     alignment and function desciption
 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 86/124 (69%), Gaps = 8/124 (6%)

Query: 17  QNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAI 76
           Q L   +++ARD AY PYSK QVGAALL +D  ++ GCN+ENA+Y M  CAE+TA+ KA+
Sbjct: 4   QELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAERTALFKAV 63

Query: 77  SEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSD-RSQVGLIT 135
           SEG T+F+ +AV+A  P     VSPCG+CRQVI+E     C   V++V ++ + Q+  +T
Sbjct: 64  SEGDTEFQMLAVAADTPGP---VSPCGACRQVISEL----CTKDVIVVLTNLQGQIKEMT 116

Query: 136 IDGM 139
           ++ +
Sbjct: 117 VEEL 120
This enzyme scavenge exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.
Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 5
>sp|P56389|CDD_MOUSE Cytidine deaminase OS=Mus musculus GN=Cda PE=1 SV=2 Back     alignment and function description
>sp|Q9S3M0|CDD_BACPY Cytidine deaminase OS=Bacillus psychrophilus GN=cdd PE=3 SV=1 Back     alignment and function description
>sp|P32320|CDD_HUMAN Cytidine deaminase OS=Homo sapiens GN=CDA PE=1 SV=2 Back     alignment and function description
>sp|Q54I82|CDD_DICDI Probable cytidine deaminase OS=Dictyostelium discoideum GN=cda PE=3 SV=1 Back     alignment and function description
>sp|Q9KD53|CDD_BACHD Cytidine deaminase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=cdd PE=3 SV=1 Back     alignment and function description
>sp|Q09190|CDD_SCHPO Putative cytidine deaminase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pcd1 PE=3 SV=2 Back     alignment and function description
>sp|P47718|CDD_MYCPI Cytidine deaminase OS=Mycoplasma pirum GN=cdd PE=3 SV=1 Back     alignment and function description
>sp|Q06549|CDD_YEAST Cytidine deaminase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDD1 PE=1 SV=1 Back     alignment and function description
>sp|O53367|CDD_MYCTU Cytidine deaminase OS=Mycobacterium tuberculosis GN=cdd PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query166
401679707134 cytidine deaminase [Veillonella sp. ACP1 0.680 0.843 0.553 6e-31
242247120157 uncharacterized protein LOC100159439 [Ac 0.759 0.802 0.5 5e-30
383847207148 PREDICTED: cytidine deaminase-like [Mega 0.789 0.885 0.529 1e-29
241632336140 cytidine deaminase, putative [Ixodes sca 0.590 0.7 0.623 6e-29
442760593179 Putative cytidine deaminase, partial [Ix 0.584 0.541 0.62 1e-28
321458259148 hypothetical protein DAPPUDRAFT_202914 [ 0.632 0.709 0.588 3e-28
71726731139 cytidine deaminase [Biomphalaria glabrat 0.662 0.791 0.521 5e-28
333994401136 cytidine deaminase [Treponema azotonutri 0.728 0.889 0.496 1e-27
417000618131 cytidine deaminase [Veillonella parvula 0.692 0.877 0.528 1e-27
348523830135 PREDICTED: cytidine deaminase-like [Oreo 0.650 0.8 0.548 2e-27
>gi|401679707|ref|ZP_10811632.1| cytidine deaminase [Veillonella sp. ACP1] gi|400219337|gb|EJO50207.1| cytidine deaminase [Veillonella sp. ACP1] Back     alignment and taxonomy information
 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 67/121 (55%), Positives = 89/121 (73%), Gaps = 8/121 (6%)

Query: 17  QNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAI 76
           QNL N +I+AR+NAYCPYS   VGAALLC+D TI+ GCN+ENASYG+T CAE+TA+ KA+
Sbjct: 7   QNLVNRAIKARENAYCPYSHFAVGAALLCEDGTIYEGCNIENASYGLTNCAERTAVFKAV 66

Query: 77  SEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITI 136
           SEG TKFK +AV A   D+    +PCG+CRQV+AEF  P     ++I+ +    V ++TI
Sbjct: 67  SEGHTKFKALAVVA---DTEGPCAPCGACRQVVAEFKIP-----IIIMGNLMGNVKIVTI 118

Query: 137 D 137
           +
Sbjct: 119 E 119

Source: Veillonella sp. ACP1

Species: Veillonella sp. ACP1

Genus: Veillonella

Family: Veillonellaceae

Order: Selenomonadales

Class: Negativicutes

Phylum: Firmicutes

Superkingdom: Bacteria
>gi|242247120|ref|NP_001156066.1| uncharacterized protein LOC100159439 [Acyrthosiphon pisum] gi|239790229|dbj|BAH71688.1| ACYPI000810 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|383847207|ref|XP_003699246.1| PREDICTED: cytidine deaminase-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|241632336|ref|XP_002410335.1| cytidine deaminase, putative [Ixodes scapularis] gi|215503392|gb|EEC12886.1| cytidine deaminase, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|442760593|gb|JAA72455.1| Putative cytidine deaminase, partial [Ixodes ricinus] Back     alignment and taxonomy information
>gi|321458259|gb|EFX69330.1| hypothetical protein DAPPUDRAFT_202914 [Daphnia pulex] Back     alignment and taxonomy information
>gi|71726731|gb|AAZ39529.1| cytidine deaminase [Biomphalaria glabrata] Back     alignment and taxonomy information
>gi|333994401|ref|YP_004527014.1| cytidine deaminase [Treponema azotonutricium ZAS-9] gi|333736614|gb|AEF82563.1| cytidine deaminase [Treponema azotonutricium ZAS-9] Back     alignment and taxonomy information
>gi|417000618|ref|ZP_11940749.1| cytidine deaminase [Veillonella parvula ACS-068-V-Sch12] gi|333975922|gb|EGL76796.1| cytidine deaminase [Veillonella parvula ACS-068-V-Sch12] Back     alignment and taxonomy information
>gi|348523830|ref|XP_003449426.1| PREDICTED: cytidine deaminase-like [Oreochromis niloticus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query166
UNIPROTKB|E1BNY1146 CDA "Uncharacterized protein" 0.698 0.794 0.508 1.1e-25
UNIPROTKB|E2RBK6146 CDA "Uncharacterized protein" 0.614 0.698 0.560 1.8e-25
ZFIN|ZDB-GENE-040426-1911159 cda "cytidine deaminase" [Dani 0.692 0.723 0.495 2.2e-25
ZFIN|ZDB-GENE-041114-88133 zgc:103586 "zgc:103586" [Danio 0.608 0.759 0.537 3.6e-25
MGI|MGI:1919519146 Cda "cytidine deaminase" [Mus 0.674 0.767 0.508 5.9e-25
UNIPROTKB|I3LAH9146 CDA "Uncharacterized protein" 0.608 0.691 0.528 9.7e-25
RGD|1311101146 Cda "cytidine deaminase" [Ratt 0.614 0.698 0.533 2e-24
FB|FBgn0032001158 CG8360 [Drosophila melanogaste 0.638 0.670 0.481 3.3e-24
UNIPROTKB|P32320146 CDA "Cytidine deaminase" [Homo 0.578 0.657 0.540 4.2e-24
DICTYBASE|DDB_G0288933147 cda "cytidine deaminase" [Dict 0.566 0.639 0.55 1.8e-23
UNIPROTKB|E1BNY1 CDA "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 62/122 (50%), Positives = 83/122 (68%)

Query:    11 ALDPIEQNLANLSIQ-ARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEK 69
             AL+P       LS Q A+ +AYCPYS+  VGAALL  D  IF+GCN+ENA Y +++CAE+
Sbjct:     9 ALEPQHVQRLLLSCQEAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPLSVCAER 68

Query:    70 TAISKAISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRS 129
             TAI KAISEG  +F+ IA+++ L D   F+SPCG+CRQV+ EF +   D  V + K D +
Sbjct:    69 TAIQKAISEGYKEFRAIAIASDLQDD--FISPCGACRQVMREFGT---DWAVYMTKLDGT 123

Query:   130 QV 131
              V
Sbjct:   124 YV 125
GO:0051289 "protein homotetramerization" evidence=IEA
GO:0045980 "negative regulation of nucleotide metabolic process" evidence=IEA
GO:0042803 "protein homodimerization activity" evidence=IEA
GO:0030308 "negative regulation of cell growth" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0004126 "cytidine deaminase activity" evidence=IEA
GO:0001882 "nucleoside binding" evidence=IEA
UNIPROTKB|E2RBK6 CDA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1911 cda "cytidine deaminase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-88 zgc:103586 "zgc:103586" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1919519 Cda "cytidine deaminase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LAH9 CDA "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1311101 Cda "cytidine deaminase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0032001 CG8360 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P32320 CDA "Cytidine deaminase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288933 cda "cytidine deaminase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P56389CDD_MOUSE3, ., 5, ., 4, ., 50.52250.63850.7260yesN/A
P19079CDD_BACSU3, ., 5, ., 4, ., 50.47580.69870.8529yesN/A
Q54I82CDD_DICDI3, ., 5, ., 4, ., 50.550.56620.6394yesN/A
Q09190CDD_SCHPO3, ., 5, ., 4, ., 50.50500.54810.6842yesN/A
Q9KD53CDD_BACHD3, ., 5, ., 4, ., 50.54630.56620.7121yesN/A
Q06549CDD_YEAST3, ., 5, ., 4, ., 50.40510.68070.7957yesN/A
P32320CDD_HUMAN3, ., 5, ., 4, ., 50.48690.66260.7534yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.40.766
3rd Layer3.5.4.50.824

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query166
COG0295134 COG0295, Cdd, Cytidine deaminase [Nucleotide trans 3e-44
TIGR01354127 TIGR01354, cyt_deam_tetra, cytidine deaminase, hom 4e-44
PRK05578131 PRK05578, PRK05578, cytidine deaminase; Validated 3e-43
cd01283112 cd01283, cytidine_deaminase, Cytidine deaminase zi 8e-39
PRK12411132 PRK12411, PRK12411, cytidine deaminase; Provisiona 1e-37
pfam00383104 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycyti 1e-19
cd0078696 cd00786, cytidine_deaminase-like, Cytidine and deo 5e-15
PRK06848139 PRK06848, PRK06848, hypothetical protein; Validate 4e-14
TIGR01355 283 TIGR01355, cyt_deam_dimer, cytidine deaminase, hom 5e-09
PLN02402 303 PLN02402, PLN02402, cytidine deaminase 5e-08
TIGR01355283 TIGR01355, cyt_deam_dimer, cytidine deaminase, hom 7e-07
PLN02182 339 PLN02182, PLN02182, cytidine deaminase 8e-07
PRK09027 295 PRK09027, PRK09027, cytidine deaminase; Provisiona 5e-06
PLN02182339 PLN02182, PLN02182, cytidine deaminase 2e-04
PRK09027295 PRK09027, PRK09027, cytidine deaminase; Provisiona 3e-04
pfam08211124 pfam08211, dCMP_cyt_deam_2, Cytidine and deoxycyti 0.001
PRK08298136 PRK08298, PRK08298, cytidine deaminase; Validated 0.002
>gnl|CDD|223372 COG0295, Cdd, Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information 
 Score =  142 bits (360), Expect = 3e-44
 Identities = 58/104 (55%), Positives = 72/104 (69%), Gaps = 3/104 (2%)

Query: 16  EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKA 75
              L  L+ +A  NAY PYSK +VGAAL  +D  I+TG NVENASYG+T+CAE++AI KA
Sbjct: 5   GLELFALAPEAAANAYAPYSKFKVGAALRTKDGRIYTGANVENASYGLTVCAERSAIFKA 64

Query: 76  ISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDI 119
           ISEG+ KF  + V A   D+ K VSPCG+CRQV+AEF      I
Sbjct: 65  ISEGKRKFDAVVVVA---DTGKPVSPCGACRQVLAEFCGDDTLI 105

Length = 134
>gnl|CDD|233371 TIGR01354, cyt_deam_tetra, cytidine deaminase, homotetrameric Back     alignment and domain information
>gnl|CDD|180142 PRK05578, PRK05578, cytidine deaminase; Validated Back     alignment and domain information
>gnl|CDD|238610 cd01283, cytidine_deaminase, Cytidine deaminase zinc-binding domain Back     alignment and domain information
>gnl|CDD|183511 PRK12411, PRK12411, cytidine deaminase; Provisional Back     alignment and domain information
>gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|238406 cd00786, cytidine_deaminase-like, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|235875 PRK06848, PRK06848, hypothetical protein; Validated Back     alignment and domain information
>gnl|CDD|233372 TIGR01355, cyt_deam_dimer, cytidine deaminase, homodimeric Back     alignment and domain information
>gnl|CDD|178024 PLN02402, PLN02402, cytidine deaminase Back     alignment and domain information
>gnl|CDD|233372 TIGR01355, cyt_deam_dimer, cytidine deaminase, homodimeric Back     alignment and domain information
>gnl|CDD|177837 PLN02182, PLN02182, cytidine deaminase Back     alignment and domain information
>gnl|CDD|181614 PRK09027, PRK09027, cytidine deaminase; Provisional Back     alignment and domain information
>gnl|CDD|177837 PLN02182, PLN02182, cytidine deaminase Back     alignment and domain information
>gnl|CDD|181614 PRK09027, PRK09027, cytidine deaminase; Provisional Back     alignment and domain information
>gnl|CDD|116797 pfam08211, dCMP_cyt_deam_2, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|236225 PRK08298, PRK08298, cytidine deaminase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 166
COG0295134 Cdd Cytidine deaminase [Nucleotide transport and m 100.0
PRK12411132 cytidine deaminase; Provisional 100.0
PRK05578131 cytidine deaminase; Validated 100.0
PRK08298136 cytidine deaminase; Validated 100.0
PRK06848139 hypothetical protein; Validated 100.0
TIGR01354127 cyt_deam_tetra cytidine deaminase, homotetrameric. 100.0
TIGR01355 283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 100.0
PLN02402 303 cytidine deaminase 100.0
PLN02182 339 cytidine deaminase 100.0
PRK09027 295 cytidine deaminase; Provisional 100.0
KOG0833|consensus173 100.0
PRK09027295 cytidine deaminase; Provisional 100.0
TIGR01355283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 99.96
cd01283112 cytidine_deaminase Cytidine deaminase zinc-binding 99.95
PLN02402303 cytidine deaminase 99.93
PF08211124 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deam 99.84
cd0078696 cytidine_deaminase-like Cytidine and deoxycytidyla 99.75
PF00383102 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam 99.64
PLN02182339 cytidine deaminase 99.63
cd01285109 nucleoside_deaminase Nucleoside deaminases include 99.24
PF14421193 LmjF365940-deam: A distinct subfamily of CDD/CDA-l 99.16
cd01286131 deoxycytidylate_deaminase Deoxycytidylate deaminas 99.15
TIGR02571151 ComEB ComE operon protein 2. This protein is found 98.92
PRK10860172 tRNA-specific adenosine deaminase; Provisional 98.89
PHA02588168 cd deoxycytidylate deaminase; Provisional 98.88
COG0590152 CumB Cytosine/adenosine deaminases [Nucleotide tra 98.77
cd01284115 Riboflavin_deaminase-reductase Riboflavin-specific 98.74
KOG1018|consensus169 98.4
PRK10786 367 ribD bifunctional diaminohydroxyphosphoribosylamin 98.08
TIGR00326 344 eubact_ribD riboflavin biosynthesis protein RibD. 98.03
PLN02807 380 diaminohydroxyphosphoribosylaminopyrimidine deamin 98.01
PF14431125 YwqJ-deaminase: YwqJ-like deaminase 97.93
COG0117146 RibD Pyrimidine deaminase [Coenzyme metabolism] 97.72
COG2131164 ComEB Deoxycytidylate deaminase [Nucleotide transp 97.58
KOG3127|consensus230 97.32
PF14437146 MafB19-deam: MafB19-like deaminase 96.37
PF14439136 Bd3614-deam: Bd3614-like deaminase 94.43
PF14440118 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase 91.66
PF14424133 Toxin-deaminase: The BURPS668_1122 family of deami 91.63
PRK13663493 hypothetical protein; Provisional 88.81
PF08903491 DUF1846: Domain of unknown function (DUF1846); Int 83.38
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-48  Score=297.36  Aligned_cols=128  Identities=49%  Similarity=0.759  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecccCCCCCCCHHHHHHHHHHHcCCCceeEEEEEeeeCCCC
Q psy2494          17 QNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILPDSN   96 (166)
Q Consensus        17 ~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~~i~~i~vv~~~~~~~   96 (166)
                      ++|+.+|.+++++||+|||+|+|||+++++||++|+|+||||++|+.|+||||+||++|++.|.++|+.|+++.   +++
T Consensus         6 ~~l~~~a~~a~~~ay~PYS~F~VGAa~~t~~G~i~tG~NiEnasy~~t~CAErsAI~~ais~G~~~~~~v~v~~---~~~   82 (134)
T COG0295           6 LELFALAPEAAANAYAPYSKFKVGAALRTKDGRIYTGANVENASYGLTVCAERSAIFKAISEGKRKFDAVVVVA---DTG   82 (134)
T ss_pred             HHHHHHHHHHHHhccCcccCCcEEEEEEeCCCCEEEEEeeecccccchhhHHHHHHHHHHHcCCCcEEEEEEEc---CCC
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999   888


Q ss_pred             CccCCCHHHHHHHHHhcCCCCCcEEEEEcCCCceEEEeecccccCCcccCCCCCCCCCC
Q psy2494          97 KFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTLHCCWERGNLVLP  155 (166)
Q Consensus        97 ~~~~PCG~CRQ~L~E~~~~~~~~~Vi~~~~~g~~~~~~~l~eLLP~~~~~~~~~~~~~~  155 (166)
                      .+++|||+|||+|.||+.  +|.+|++.+.+|. ++.+||+||||++     |++.+|.
T Consensus        83 ~~~sPCG~CRQ~i~Ef~~--~d~~ii~~~~~~~-~~~~tl~eLLP~~-----F~~~~l~  133 (134)
T COG0295          83 KPVSPCGACRQVLAEFCG--DDTLIILLPKDGI-VKTMTLGELLPDA-----FGPKDLE  133 (134)
T ss_pred             CCcCCcHHHHHHHHHhcC--CCceEEEecCCCc-EEEEEHHHhCccc-----CCccccc
Confidence            999999999999999997  8999999988888 8999999999998     8888875

>PRK12411 cytidine deaminase; Provisional Back     alignment and domain information
>PRK05578 cytidine deaminase; Validated Back     alignment and domain information
>PRK08298 cytidine deaminase; Validated Back     alignment and domain information
>PRK06848 hypothetical protein; Validated Back     alignment and domain information
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>PLN02182 cytidine deaminase Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>KOG0833|consensus Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase Back     alignment and domain information
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3 Back     alignment and domain information
>PLN02182 cytidine deaminase Back     alignment and domain information
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases Back     alignment and domain information
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain Back     alignment and domain information
>TIGR02571 ComEB ComE operon protein 2 Back     alignment and domain information
>PRK10860 tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information
>PHA02588 cd deoxycytidylate deaminase; Provisional Back     alignment and domain information
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase Back     alignment and domain information
>KOG1018|consensus Back     alignment and domain information
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD Back     alignment and domain information
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase Back     alignment and domain information
>PF14431 YwqJ-deaminase: YwqJ-like deaminase Back     alignment and domain information
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3127|consensus Back     alignment and domain information
>PF14437 MafB19-deam: MafB19-like deaminase Back     alignment and domain information
>PF14439 Bd3614-deam: Bd3614-like deaminase Back     alignment and domain information
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase Back     alignment and domain information
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases Back     alignment and domain information
>PRK13663 hypothetical protein; Provisional Back     alignment and domain information
>PF08903 DUF1846: Domain of unknown function (DUF1846); InterPro: IPR014999 This group of proteins are functionally uncharacterised Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query166
1jtk_A136 Crystal Structure Of Cytidine Deaminase From Bacill 1e-26
1ux0_A136 Bacillus Subtilis Cytidine Deaminase With An Arg56 2e-26
1zab_A146 Crystal Structure Of Mouse Cytidine Deaminase Compl 2e-26
1uwz_A136 Bacillus Subtilis Cytidine Deaminase With An Arg56 4e-26
1ux1_A136 Bacillus Subtilis Cytidine Deaminase With A Cys53hi 2e-25
1mq0_A140 Crystal Structure Of Human Cytidine Deaminase Lengt 2e-25
2d30_A141 Crystal Structure Of Cytidine Deaminase Cdd-2 (Ba45 8e-25
3dmo_A138 1.6 A Crystal Structure Of Cytidine Deaminase From 6e-18
3mpz_A150 Crystal Structure Of Cytidine Deaminase From Mycoba 1e-15
1r5t_A142 The Crystal Structure Of Cytidine Deaminase Cdd1, A 3e-15
3ijf_X133 Crystal Structure Of Cytidine Deaminase From Mycoba 1e-14
3r2n_A138 Crystal Structure Of Cytidine Deaminase From Mycoba 3e-14
4f3w_A135 Crystal Structure Of Cytidine Deaminase Cdd From My 9e-14
4eg2_A 298 2.2 Angstrom Crystal Structure Of Cytidine Deaminas 7e-06
1af2_A 294 Crystal Structure Of Cytidine Deaminase Complexed W 5e-05
3oj6_A158 Crystal Structure Of Blasticidin S Deaminase From C 3e-04
>pdb|1JTK|A Chain A, Crystal Structure Of Cytidine Deaminase From Bacillus Subtilis In Complex With The Inhibitor Tetrahydrodeoxyuridine Length = 136 Back     alignment and structure 
Iteration: 1

 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 86/124 (69%), Gaps = 8/124 (6%)
Query: 17  QNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAI 76
           Q L   +++ARD AY PYSK QVGAALL +D  ++ GCN+ENA+Y M  CAE+TA+ KA+
Sbjct: 4   QELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAERTALFKAV 63
Query: 77  SEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSD-RSQVGLIT 135
           SEG T+F+ +AV+A  P     VSPCG+CRQVI+E     C   V++V ++ + Q+  +T
Sbjct: 64  SEGDTEFQMLAVAADTPGP---VSPCGACRQVISEL----CTKDVIVVLTNLQGQIKEMT 116
Query: 136 IDGM 139
           ++ +
Sbjct: 117 VEEL 120
>pdb|1UX0|A Chain A, Bacillus Subtilis Cytidine Deaminase With An Arg56 - Gln Substitution Length = 136 Back     alignment and structure
>pdb|1ZAB|A Chain A, Crystal Structure Of Mouse Cytidine Deaminase Complexed With 3-Deazauridine Length = 146 Back     alignment and structure
>pdb|1UWZ|A Chain A, Bacillus Subtilis Cytidine Deaminase With An Arg56 - Ala Substitution Length = 136 Back     alignment and structure
>pdb|1UX1|A Chain A, Bacillus Subtilis Cytidine Deaminase With A Cys53his And An Arg56gln Substitution Length = 136 Back     alignment and structure
>pdb|1MQ0|A Chain A, Crystal Structure Of Human Cytidine Deaminase Length = 140 Back     alignment and structure
>pdb|2D30|A Chain A, Crystal Structure Of Cytidine Deaminase Cdd-2 (Ba4525) From Bacillus Anthracis At 2.40a Resolution Length = 141 Back     alignment and structure
>pdb|3DMO|A Chain A, 1.6 A Crystal Structure Of Cytidine Deaminase From Burkholderia Pseudomallei Length = 138 Back     alignment and structure
>pdb|3MPZ|A Chain A, Crystal Structure Of Cytidine Deaminase From Mycobacterium S Length = 150 Back     alignment and structure
>pdb|1R5T|A Chain A, The Crystal Structure Of Cytidine Deaminase Cdd1, An Orphan C To U Editase From Yeast Length = 142 Back     alignment and structure
>pdb|3IJF|X Chain X, Crystal Structure Of Cytidine Deaminase From Mycobacterium Tuberculosis Length = 133 Back     alignment and structure
>pdb|3R2N|A Chain A, Crystal Structure Of Cytidine Deaminase From Mycobacterium Leprae Length = 138 Back     alignment and structure
>pdb|4F3W|A Chain A, Crystal Structure Of Cytidine Deaminase Cdd From Mycobacterium Marinum Length = 135 Back     alignment and structure
>pdb|4EG2|A Chain A, 2.2 Angstrom Crystal Structure Of Cytidine Deaminase From Vibrio Cholerae In Complex With Zinc And Uridine Length = 298 Back     alignment and structure
>pdb|1AF2|A Chain A, Crystal Structure Of Cytidine Deaminase Complexed With Uridine Length = 294 Back     alignment and structure
>pdb|3OJ6|A Chain A, Crystal Structure Of Blasticidin S Deaminase From Coccidioides Immitis Length = 158 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query166
2d30_A141 Cytidine deaminase; purines, pyrimidines, nucleosi 3e-49
1r5t_A142 Cytidine deaminase; zinc dependent deaminase, RNA 3e-47
1uwz_A136 Cytidine deaminase; CDD, tetramer, zinc binding, p 7e-45
2fr5_A146 Cytidine deaminase; tetrahydrouridine, protein-inh 4e-44
3r2n_A138 Cytidine deaminase; structural genomics, seattle s 5e-44
3mpz_A150 Cytidine deaminase; ssgcid, structu genomics, seat 5e-42
3dmo_A138 Cytidine deaminase; structural genomics, seattle s 3e-41
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 3e-38
1ctt_A 294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 2e-32
3oj6_A158 Blasticidin-S deaminase; ssgcid, seattle structura 3e-38
2z3g_A130 Blasticidin-S deaminase; hydrolase, cytidine deami 1e-37
3b8f_A142 Putative blasticidin S deaminase; cytidine deamina 1e-37
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 4e-35
4eg2_A 298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 6e-32
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 Length = 141 Back     alignment and structure
 Score =  154 bits (392), Expect = 3e-49
 Identities = 55/112 (49%), Positives = 72/112 (64%), Gaps = 5/112 (4%)

Query: 16  EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKA 75
            + L   +I+AR  AY PYSK QVGAALL QD  ++ GCNVENASYG+  CAE+TA+ KA
Sbjct: 12  SKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKA 71

Query: 76  ISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSD 127
           +SEG  +F  IA+ A   D+ + V PCG+CRQV+ E      D +V +    
Sbjct: 72  VSEGDKEFVAIAIVA---DTKRPVPPCGACRQVMVELCKQ--DTKVYLSNLH 118
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 Length = 142 Back     alignment and structure
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* Length = 136 Back     alignment and structure
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* Length = 146 Back     alignment and structure
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} Length = 138 Back     alignment and structure
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X Length = 150 Back     alignment and structure
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} Length = 138 Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Length = 294 Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Length = 294 Back     alignment and structure
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis} Length = 158 Back     alignment and structure
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* Length = 130 Back     alignment and structure
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} Length = 142 Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Length = 298 Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Length = 298 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query166
3dmo_A138 Cytidine deaminase; structural genomics, seattle s 100.0
2d30_A141 Cytidine deaminase; purines, pyrimidines, nucleosi 100.0
1r5t_A142 Cytidine deaminase; zinc dependent deaminase, RNA 100.0
3mpz_A150 Cytidine deaminase; ssgcid, structu genomics, seat 100.0
3r2n_A138 Cytidine deaminase; structural genomics, seattle s 100.0
2fr5_A146 Cytidine deaminase; tetrahydrouridine, protein-inh 100.0
1uwz_A136 Cytidine deaminase; CDD, tetramer, zinc binding, p 100.0
3oj6_A158 Blasticidin-S deaminase; ssgcid, seattle structura 100.0
2z3g_A130 Blasticidin-S deaminase; hydrolase, cytidine deami 100.0
3b8f_A142 Putative blasticidin S deaminase; cytidine deamina 100.0
4eg2_A 298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 100.0
1ctt_A 294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 100.0
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 100.0
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 100.0
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 99.75
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 99.73
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 99.71
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 99.71
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 99.68
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 99.61
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 99.59
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 99.55
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 99.54
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 99.37
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 99.02
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 98.94
2hxv_A 360 Diaminohydroxyphosphoribosylaminopyrimidine deami 98.22
2g6v_A 402 Riboflavin biosynthesis protein RIBD; RIBD APO str 98.11
2b3z_A 373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 98.09
3g8q_A 278 Predicted RNA-binding protein, contains thump doma 97.81
2nyt_A190 Probable C->U-editing enzyme apobec-2; cytidine de 96.66
3bh1_A507 UPF0371 protein DIP2346; structural genomics, unkn 86.6
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
Probab=100.00  E-value=1.2e-48  Score=300.00  Aligned_cols=122  Identities=38%  Similarity=0.711  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecccCCCCCCCHHHHHHHHHHHcCCC--ceeEEEEEeeeC
Q psy2494          16 EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQT--KFKRIAVSAILP   93 (166)
Q Consensus        16 ~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~--~i~~i~vv~~~~   93 (166)
                      ..+|+++|++++++||+|||+|+||||++++||+||+|+||||++|+.|+||||+||++|+++|++  +|++|+|++   
T Consensus        11 ~~~L~~~A~~a~~~AyaPYS~F~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~G~~~~~i~aiavv~---   87 (138)
T 3dmo_A           11 HHALIEAAKAAREKAYAPYSNFKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAVVG---   87 (138)
T ss_dssp             HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCTTCEEEEEEEE---
T ss_pred             HHHHHHHHHHHHHhccCCcCCCCEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHcCCCcccEEEEEEEc---
Confidence            468999999999999999999999999999999999999999999999999999999999999999  999999999   


Q ss_pred             CCCCccCCCHHHHHHHHHhcCCCCCcEEEEEcCCCceEEEeecccccCCc
Q psy2494          94 DSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTL  143 (166)
Q Consensus        94 ~~~~~~~PCG~CRQ~L~E~~~~~~~~~Vi~~~~~g~~~~~~~l~eLLP~~  143 (166)
                      +.+.+++|||+|||+|.||+.  ++++|++.+.+|+ ++.++|+||||++
T Consensus        88 ~~~~~~~PCG~CRQ~l~Ef~~--~~~~V~~~~~~g~-~~~~tl~eLLP~~  134 (138)
T 3dmo_A           88 ETHGPIAPCGACRQVMIELGK--PTLEVVLTNMQGD-VRVTSAGDLLPDA  134 (138)
T ss_dssp             SCSSSCCCCHHHHHHHHHHHC--TTCEEEEECSSSC-EEEEEHHHHSTTC
T ss_pred             CCCCccCCCHHHHHHHHHhCC--CCcEEEEECCCCC-EEEeEHHHhCcCc
Confidence            778899999999999999986  7999999999998 8899999999997
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 Back     alignment and structure
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 Back     alignment and structure
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A Back     alignment and structure
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0 Back     alignment and structure
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* Back     alignment and structure
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* Back     alignment and structure
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis} Back     alignment and structure
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* Back     alignment and structure
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Back     alignment and structure
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Back     alignment and structure
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Back     alignment and structure
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Back     alignment and structure
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Back     alignment and structure
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Back     alignment and structure
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} Back     alignment and structure
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A Back     alignment and structure
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function, protein structure INI PSI-2; 2.51A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 166
d2d30a1124 c.97.1.1 (A:1-124) mono-domain cytidine deaminase 2e-34
d1alna2144 c.97.1.1 (A:151-294) Two-domain cytidine deaminase 2e-32
d1uwza_130 c.97.1.1 (A:) mono-domain cytidine deaminase {Baci 6e-31
d1r5ta_141 c.97.1.1 (A:) mono-domain cytidine deaminase {Bake 7e-31
d2fr5a1136 c.97.1.1 (A:11-146) mono-domain cytidine deaminase 2e-30
d1alna1150 c.97.1.1 (A:1-150) Two-domain cytidine deaminase { 8e-30
d2z3ga1123 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Asperg 3e-28
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]} Length = 124 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: mono-domain cytidine deaminase
species: Bacillus anthracis [TaxId: 1392]

 Score =  115 bits (289), Expect = 2e-34
 Identities = 54/112 (48%), Positives = 71/112 (63%), Gaps = 5/112 (4%)

Query: 16  EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKA 75
            + L   +I+AR  AY PYSK QVGAALL QD  ++ GCNVENASYG+  CAE+TA+ KA
Sbjct: 3   SKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKA 62

Query: 76  ISEGQTKFKRIAVSAILPDSNKFVSPCGSCRQVIAEFSSPACDIQVLIVKSD 127
           +SEG  +F  IA+     D+ + V PCG+CRQV+ E      D +V +    
Sbjct: 63  VSEGDKEFVAIAIV---ADTKRPVPPCGACRQVMVELCKQ--DTKVYLSNLH 109
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Length = 144 Back     information, alignment and structure
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]} Length = 130 Back     information, alignment and structure
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 141 Back     information, alignment and structure
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]} Length = 136 Back     information, alignment and structure
>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Length = 150 Back     information, alignment and structure
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]} Length = 123 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query166
d1uwza_130 mono-domain cytidine deaminase {Bacillus subtilis 100.0
d2fr5a1136 mono-domain cytidine deaminase {Mouse (Mus musculu 100.0
d1r5ta_141 mono-domain cytidine deaminase {Baker's yeast (Sac 100.0
d2d30a1124 mono-domain cytidine deaminase {Bacillus anthracis 100.0
d2z3ga1123 Blasticidin-S deaminase {Aspergillus terreus [TaxI 100.0
d1alna1150 Two-domain cytidine deaminase {Escherichia coli [T 100.0
d1alna2144 Two-domain cytidine deaminase {Escherichia coli [T 100.0
d1p6oa_156 Cytosine deaminase {Baker's yeast (Saccharomyces c 99.0
d1z3aa1156 tRNA adenosine deaminase TadA {Escherichia coli [T 98.96
d1wkqa_158 Guanine deaminase GuaD {Bacillus subtilis [TaxId: 98.87
d2g84a1189 Putative deaminase NE0047 {Nitrosomonas europaea [ 98.8
d2b3ja1151 tRNA adenosine deaminase TadA {Staphylococcus aure 98.77
d2a8na1130 Cytidine and deoxycytidylate deaminase CodA {Agrob 98.74
d1wwra1151 tRNA adenosine deaminase TadA {Aquifex aeolicus [T 98.73
d1vq2a_193 Deoxycytidylate deaminase {Bacteriophage T4 [TaxId 98.55
d2hxva2147 Riboflavin biosynthesis protein RibD {Thermotoga m 98.46
d2b3za2145 Riboflavin biosynthesis protein RibD {Bacillus sub 97.67
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: mono-domain cytidine deaminase
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=7.3e-49  Score=296.51  Aligned_cols=128  Identities=45%  Similarity=0.744  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCceEEEEEeCCCcEEEEeeecccCCCCCCCHHHHHHHHHHHcCCCceeEEEEEeeeCCC
Q psy2494          16 EQNLANLSIQARDNAYCPYSKLQVGAALLCQDDTIFTGCNVENASYGMTICAEKTAISKAISEGQTKFKRIAVSAILPDS   95 (166)
Q Consensus        16 ~~~L~~~A~~a~~~ayaPyS~f~VGAAv~~~dG~i~~G~NvEnas~~~s~CAEr~Ai~~a~~~G~~~i~~i~vv~~~~~~   95 (166)
                      .++|+++|++++++||+|||+|+||||++++||+||+|+|+||++|++++||||+||++|++.|+++|+.++|+.   +.
T Consensus         3 ~~~L~~~A~~a~~~ayaPyS~f~VGAa~~~~~G~i~~G~NvEnas~~~~~CAEr~Ai~~a~~~g~~~~~~i~v~~---~~   79 (130)
T d1uwza_           3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSEGDTEFQMLAVAA---DT   79 (130)
T ss_dssp             HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHHTCCCEEEEEEEE---SC
T ss_pred             HHHHHHHHHHHHHhCcCCccCCcEEEEEEeCCCCEEEEeeeccccccccccceehhhHHHHHhhhcceeeEEEEc---CC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999999   88


Q ss_pred             CCccCCCHHHHHHHHHhcCCCCCcEEEEEcCCCceEEEeecccccCCcccCCCCCCCCC
Q psy2494          96 NKFVSPCGSCRQVIAEFSSPACDIQVLIVKSDRSQVGLITIDGMYLTLHCCWERGNLVL  154 (166)
Q Consensus        96 ~~~~~PCG~CRQ~L~E~~~~~~~~~Vi~~~~~g~~~~~~~l~eLLP~~~~~~~~~~~~~  154 (166)
                      +.+++|||+|||+|.||+.  ++++|++.+.+|+ ++.++|+||||++     |||.||
T Consensus        80 ~~~~sPCG~CRQ~l~E~~~--~~~~i~l~~~~g~-~~~~~l~eLLP~~-----F~~~dL  130 (130)
T d1uwza_          80 PGPVSPCGACRQVISELCT--KDVIVVLTNLQGQ-IKEMTVEELLPGA-----FSSEDL  130 (130)
T ss_dssp             SSSCCCCHHHHHHHHHHSC--TTCEEEEECSSSC-EEEEEHHHHSTTC-----CCGGGC
T ss_pred             CCccCcCHHHHHHHHHhCC--CCcEEEEECCCCC-EEEEEHHHhCcCC-----CCcccC
Confidence            8889999999999999986  7999999999998 8889999999998     888876
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]} Back     information, alignment and structure
>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure