Psyllid ID: psy2497

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
Protein Sequence
MAAESTTDLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH
Secondary Structure (PSIPRED)
ccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEEcccccccccEEEEEcccccccEEEEEccccHHHHHHHHcccEEEEEcccccccEEEEEEEcEEccHHHHHHHHHcccccccHHHHccccccccccHHHHHHHHHHHHHHcccccccccccccccEEEEccEEEEcccccccccccEEEEccccccccccccccccccEEEEEcccccccccHHHHHHHHcccEEEEEcccccccEEEEEEEEEEccHHHHHHHHHccccccHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHcccccccHHHccccHHHHHHHHHHHHHHccccccccEEEEEEEcccccEEEEEEEcccEEccEEEEEEEcccHHHHHHHHccEEEEEEEEHHHcEEEEEEEEEEEccHHHHHHHHHHccHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccEEEEEEcccEEEEEEcccccccEEEEEEEccccccccccEEcccccEEEEcccccccHccHHHHHHHHccEEEEEEEEHHHcEEEEEEEEEEEccHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
maaesttdlkdkrvpyksrnevllekdivkepFKLFESWFheanntpgiiEANAMFIATStkngipsgRMVLLKSYGKNGFVFFTNynsrkgnelaenpqaslafyweplkrsvrieghvektsdkesddyfqsrpyaskigaiasdqsrpcesrdQMSKITEELRQKYkegdyvprpkhwggyvvipKVIEFWqgqsdrvhdrivfkrpvpgeplgphshegedgwyyerlfpqpkqgiQYLHLkaenpqaslafyweplkrsvrieghvektsdkesddyfqsrpyaskigaiasdqsrpcesrdQMSKITEELRQKYkegdyvprpkh
Flexible Loop (DISEMBL)
maaesttdlkdkrvpyksrnevllekdivKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGhvektsdkesddyfQSRPYASkigaiasdqsrpcesrdQMSKITEELRQkykegdyvprpkhwGGYVVIPKVIEFWQGQSDRVHDRIVFKrpvpgeplgphshEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGhvektsdkesddyfQSRPYASkigaiasdqsrpcesrdQMSKITEelrqkykegdyvprpkh
Low Complexity Region (SEG)
MAAESTTDLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH
Disordered region (IsUnstruct)
********************EVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKG*******QASLAFYWEPLKRSVRI********************************************************DYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKR***************DGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRI****************************************************************
Disordered Region (DISOPRED)
***********KRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYER****************ENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRP**
Disordered Region (DISEMBL)
*********KDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIA************MSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIA************MSKITEELRQKYKE*********
Disordered Region (DISPRO)
********LKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAESTTDLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	331	2.2.26 [Sep-21-2011]
O88794	261	Pyridoxine-5'-phosphate o	yes	N/A	0.691	0.877	0.527	8e-65
Q91XF0	261	Pyridoxine-5'-phosphate o	yes	N/A	0.691	0.877	0.523	2e-64
Q9NVS9	261	Pyridoxine-5'-phosphate o	yes	N/A	0.691	0.877	0.523	3e-64
Q5E9K3	261	Pyridoxine-5'-phosphate o	yes	N/A	0.691	0.877	0.519	8e-64
Q3MFQ5	214	Pyridoxine/pyridoxamine 5	yes	N/A	0.604	0.934	0.5	7e-52
Q8YXG5	214	Pyridoxine/pyridoxamine 5	yes	N/A	0.558	0.864	0.545	1e-50
B7K9I2	214	Pyridoxine/pyridoxamine 5	yes	N/A	0.598	0.925	0.495	4e-50
B4E9I1	214	Pyridoxine/pyridoxamine 5	yes	N/A	0.643	0.995	0.464	8e-50
B1JXH8	214	Pyridoxine/pyridoxamine 5	yes	N/A	0.643	0.995	0.464	1e-49
A9AGI1	214	Pyridoxine/pyridoxamine 5	yes	N/A	0.643	0.995	0.473	1e-49

>sp|O88794|PNPO_RAT Pyridoxine-5'-phosphate oxidase OS=Rattus norvegicus GN=Pnpo PE=1 SV=1

 Score =  247 bits (631), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 123/233 (52%), Positives = 160/233 (68%), Gaps = 4/233 (1%)

Query: 5   STTDLKDKRVPYKSRNEVLLEKDIVK-EPFKLFESWFHEANNTPGIIEANAMFIATSTKN 63
           +  DL   R  Y+   E   E  +   +P K F SWF EA   P I EANAM +AT T++
Sbjct: 30  AVMDLGPMRKSYRGDREAFEEAHLTSLDPMKQFASWFEEAVQCPDIGEANAMCLATCTRD 89

Query: 64  GIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKT 123
           G PS RM+LLK +GK+GF FFTNY SRKG EL  NP ASL FYWEPL R VR+EG V+K 
Sbjct: 90  GKPSARMLLLKGFGKDGFRFFTNYESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKL 149

Query: 124 SDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGG 183
            +KE+++YF SRP +S+IGA+ S QS     R+ + K  EEL Q Y+E + VP+P++WGG
Sbjct: 150 PEKEAENYFHSRPKSSQIGAVVSRQSSVIPDREYLRKKNEELGQLYREQE-VPKPEYWGG 208

Query: 184 YVVIPKVIEFWQGQSDRVHDRIVFKRPVPG--EPLGPHSHEGEDGWYYERLFP 234
           Y++ P+V+EFWQGQ++R+HDRIVF+R +     PLGP +H GE+ W YERL P
Sbjct: 209 YILYPQVMEFWQGQTNRLHDRIVFRRGLATGDSPLGPMTHHGEEDWVYERLAP 261

Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 4EC: .EC: 3EC: .EC: 5

>sp|Q91XF0|PNPO_MOUSE Pyridoxine-5'-phosphate oxidase OS=Mus musculus GN=Pnpo PE=1 SV=1

 Score =  246 bits (627), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 122/233 (52%), Positives = 160/233 (68%), Gaps = 4/233 (1%)

Query: 5   STTDLKDKRVPYKSRNEVLLEKDIVK-EPFKLFESWFHEANNTPGIIEANAMFIATSTKN 63
           +  DL   R  Y+   E   E  +   +P K F SWF EA   P I EANAM +AT T++
Sbjct: 30  AVMDLGPMRKSYRGDREAFEETHLTSLDPMKQFASWFDEAVQCPDIGEANAMCVATCTRD 89

Query: 64  GIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKT 123
           G PS RM+LLK +GK+GF FFTNY SRKG EL  NP ASL FYWEPL R VR+EG V+K 
Sbjct: 90  GKPSARMLLLKGFGKDGFRFFTNYESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKL 149

Query: 124 SDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGG 183
            +KE+++YF SRP +S+IGA+ S QS     R+ + K  EEL Q Y++ + VP+P++WGG
Sbjct: 150 PEKEAENYFHSRPKSSQIGAVVSRQSSVIPDREYLRKKNEELGQLYQDQE-VPKPEYWGG 208

Query: 184 YVVIPKVIEFWQGQSDRVHDRIVFKRPVPG--EPLGPHSHEGEDGWYYERLFP 234
           Y++ P+V+EFWQGQ++R+HDRIVF+R +     PLGP +H GE+ W YERL P
Sbjct: 209 YILYPQVMEFWQGQTNRLHDRIVFRRGLATGDSPLGPMTHHGEEDWVYERLAP 261

Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 5

>sp|Q9NVS9|PNPO_HUMAN Pyridoxine-5'-phosphate oxidase OS=Homo sapiens GN=PNPO PE=1 SV=1

 Score =  245 bits (626), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/233 (52%), Positives = 159/233 (68%), Gaps = 4/233 (1%)

Query: 5   STTDLKDKRVPYKSRNEVLLEKDIVK-EPFKLFESWFHEANNTPGIIEANAMFIATSTKN 63
           +  DL   R  Y+   E   E  +   +P K F +WF EA   P I EANAM +AT T++
Sbjct: 30  AAMDLGPMRKSYRGDREAFEETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATCTRD 89

Query: 64  GIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKT 123
           G PS RM+LLK +GK+GF FFTN+ SRKG EL  NP ASL FYWEPL R VR+EG V+K 
Sbjct: 90  GKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKL 149

Query: 124 SDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGG 183
            ++E++ YF SRP +S+IGA+ S QS     R+ + K  EEL Q Y++ + VP+PK WGG
Sbjct: 150 PEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQE-VPKPKSWGG 208

Query: 184 YVVIPKVIEFWQGQSDRVHDRIVFKRPVPG--EPLGPHSHEGEDGWYYERLFP 234
           YV+ P+V+EFWQGQ++R+HDRIVF+R +P    PLGP +H GE+ W YERL P
Sbjct: 209 YVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGDSPLGPMTHRGEEDWLYERLAP 261

Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 5

>sp|Q5E9K3|PNPO_BOVIN Pyridoxine-5'-phosphate oxidase OS=Bos taurus GN=PNPO PE=2 SV=1

 Score =  244 bits (622), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 121/233 (51%), Positives = 160/233 (68%), Gaps = 4/233 (1%)

Query: 5   STTDLKDKRVPYKSRNEVLLEKDIVK-EPFKLFESWFHEANNTPGIIEANAMFIATSTKN 63
           +  DL   R  Y+   E   E  +   +P K F +WF EA   P I+EANAM +AT T++
Sbjct: 30  AAMDLGPMRKTYRGDPEAFEETHLTSLDPVKQFAAWFEEAVQCPDIMEANAMCLATCTRD 89

Query: 64  GIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKT 123
           G PS RMVLLK +GK+GF FFTN+ SRKG EL  NP ASL FYWEPL R VR+EG V+K 
Sbjct: 90  GKPSARMVLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLHRQVRVEGPVKKL 149

Query: 124 SDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGG 183
            ++E++ YF SRP +S+IGA+ S QS     R+ + K  +EL Q Y+E + VP+PK+WGG
Sbjct: 150 PEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNKELEQLYQEQE-VPKPKYWGG 208

Query: 184 YVVIPKVIEFWQGQSDRVHDRIVFKRPV--PGEPLGPHSHEGEDGWYYERLFP 234
           Y++ P+V+EFWQGQ++R+HDRIVF+R +     PLGP +H GE+ W YERL P
Sbjct: 209 YILYPQVMEFWQGQTNRLHDRIVFRRGLLTGDSPLGPMTHRGEEDWVYERLAP 261

Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 5

>sp|Q3MFQ5|PDXH_ANAVT Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=pdxH PE=3 SV=1

 Score =  204 bits (519), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 107/214 (50%), Positives = 136/214 (63%), Gaps = 14/214 (6%)

Query: 21  EVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNG 80
           E L E ++   PF+ F+ WF +A     + E NAM IATST +G PS RMVLLK + + G
Sbjct: 15  EALSEVEVDTNPFRQFKRWFEQAL-AAQLPEPNAMTIATSTPDGQPSARMVLLKDFDERG 73

Query: 81  FVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASK 140
           FVFFTNYNSRKG ELAENPQA+L F+W  L+R VRI G VEK S+ ESD YF SRP  S+
Sbjct: 74  FVFFTNYNSRKGQELAENPQAALVFWWAELERQVRISGRVEKVSESESDYYFYSRPANSR 133

Query: 141 IGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDR 200
           +GA  S+QS    SR+ + +  +E + KY E   +PRP HWGG  VIP  IEFWQG+S R
Sbjct: 134 LGAWVSNQSEIIASREVLEQRMQEFQHKY-ENQEIPRPSHWGGLRVIPSQIEFWQGRSSR 192

Query: 201 VHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           +HDR+++            +   +D W   RL P
Sbjct: 193 LHDRLLY------------TLLNDDSWEIHRLSP 214

Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 5

>sp|Q8YXG5|PDXH_NOSS1 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=pdxH PE=3 SV=1

 Score =  200 bits (508), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/187 (54%), Positives = 128/187 (68%), Gaps = 2/187 (1%)

Query: 21  EVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNG 80
           E L E ++   PF  F+ WF +A     + E NAM IATST +G PS RMVLLK + + G
Sbjct: 15  EGLSEIEVDPNPFIQFKKWFEQAL-AAQLPEPNAMTIATSTPDGQPSARMVLLKDFDEQG 73

Query: 81  FVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASK 140
           FVFFTNYNSRKG ELAENPQA+L F+W  L+R VRI G VEK S+ ESD YF SRP  S+
Sbjct: 74  FVFFTNYNSRKGQELAENPQAALVFWWAELERQVRISGRVEKVSESESDYYFYSRPANSR 133

Query: 141 IGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDR 200
           +GA  S+QS    SR+ + +  +E + KY E   +PRP HWGG  VIP  IEFWQG+S R
Sbjct: 134 LGAWVSNQSEIIASREVLEQRMQEFQHKY-ENQEIPRPAHWGGLRVIPSEIEFWQGRSSR 192

Query: 201 VHDRIVF 207
           +HDR+++
Sbjct: 193 LHDRLLY 199

Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 5

>sp|B7K9I2|PDXH_CYAP7 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Cyanothece sp. (strain PCC 7424) GN=pdxH PE=3 SV=1

 Score =  198 bits (504), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 105/212 (49%), Positives = 137/212 (64%), Gaps = 14/212 (6%)

Query: 23  LLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFV 82
           L E +    PF  F  WF++A      +E NAM IAT T +G PS RMVLLK + + GFV
Sbjct: 17  LTEAEANPNPFVQFRLWFNQALEA-QFLEPNAMTIATVTPDGKPSARMVLLKDFDERGFV 75

Query: 83  FFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIG 142
           F+TNY+S KG +LA+ P A+L F+W+ L+R VRIEG VEK S +ESD YF SRP+ S++G
Sbjct: 76  FYTNYDSAKGQQLAQTPWAALVFWWDALERQVRIEGTVEKVSQEESDAYFASRPWESRLG 135

Query: 143 AIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVH 202
           A  SDQSR  ESR+ +    + L+ KY+  D VPRP HWGG+ V+P+ IEFWQG+ +R+H
Sbjct: 136 AWVSDQSRVIESREVLENRLQALKDKYQAQD-VPRPPHWGGFRVMPEKIEFWQGRPNRLH 194

Query: 203 DRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           DR+ +K             EGE  W  ERL P
Sbjct: 195 DRLCYK-----------WIEGEK-WIIERLSP 214

Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 5

>sp|B4E9I1|PDXH_BURCJ Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=pdxH PE=3 SV=1

 Score =  197 bits (501), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 106/228 (46%), Positives = 138/228 (60%), Gaps = 15/228 (6%)

Query: 7   TDLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIP 66
           T L D R+ Y   +  L E D   +PF  F+ WF EA     + E N M +AT   +G P
Sbjct: 2   TTLADLRINYSRAS--LDEADAAPDPFAQFDRWFKEALAA-KLPEPNTMTLATVGADGRP 58

Query: 67  SGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDK 126
           S R+VL+K   + GFVFFTNY SRKG++LA +PQA+L FYW  L+R VRIEG +EKTS +
Sbjct: 59  SARIVLIKGVDERGFVFFTNYESRKGHDLAVHPQAALLFYWIELERQVRIEGRIEKTSAE 118

Query: 127 ESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVV 186
           ESD YF SRP  S+IGA AS+QS   +SR  +    + + ++Y  GD  PRP HWGGY +
Sbjct: 119 ESDRYFASRPLGSRIGAWASEQSAVIDSRATLEAREKAVSERY--GDNPPRPPHWGGYRL 176

Query: 187 IPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           +P  IEFWQG+  R+HDR+++ R     P          GW   RL P
Sbjct: 177 VPDSIEFWQGRPSRLHDRLLYTRDAAASP----------GWTISRLSP 214

Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).

Burkholderia cepacia (strain J2315 / LMG 16656) (taxid: 216591)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 5

>sp|B1JXH8|PDXH_BURCC Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia cenocepacia (strain MC0-3) GN=pdxH PE=3 SV=1

 Score =  197 bits (500), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/228 (46%), Positives = 138/228 (60%), Gaps = 15/228 (6%)

Query: 7   TDLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIP 66
           T L D R+ Y   +  L E D   +PF  F+ WF EA     + E N M +AT   +G P
Sbjct: 2   TTLADLRINYSRAS--LDEADAAPDPFAQFDRWFKEALAA-KLPEPNTMTLATVGADGRP 58

Query: 67  SGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDK 126
           S R+VL+K   + GFVFFTNY SRKG++LA +PQA+L FYW  L+R VRIEG +EKTS +
Sbjct: 59  SARIVLIKGVDERGFVFFTNYESRKGHDLAVHPQAALLFYWIELERQVRIEGRIEKTSAE 118

Query: 127 ESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVV 186
           ESD YF SRP  S+IGA AS+QS   +SR  +    + + ++Y  GD  PRP HWGGY +
Sbjct: 119 ESDRYFASRPLGSRIGAWASEQSAVIDSRATLEAREKAVSERY--GDNPPRPPHWGGYRL 176

Query: 187 IPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           +P  IEFWQG+  R+HDR+++ R     P          GW   RL P
Sbjct: 177 VPDSIEFWQGRPSRLHDRLLYTRDATAAP----------GWTISRLSP 214

Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).

Burkholderia cenocepacia (strain MC0-3) (taxid: 406425)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 5

>sp|A9AGI1|PDXH_BURM1 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=pdxH PE=3 SV=1

 Score =  197 bits (500), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 108/228 (47%), Positives = 138/228 (60%), Gaps = 15/228 (6%)

Query: 7   TDLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIP 66
           T L D R+ Y   +  L E D   +PF  F+ WF+EA     + E N M +AT   +G P
Sbjct: 2   TTLADLRINYSRAS--LDEADAAPDPFAQFDRWFNEALAA-KLPEPNTMTLATVGADGRP 58

Query: 67  SGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDK 126
           S R+VL+K   + GFVFFTNY SRKG +LA +P A+L FYW  L+R VRIEG VEKTS +
Sbjct: 59  SARIVLVKGVDERGFVFFTNYESRKGRDLAAHPYAALLFYWIELERQVRIEGRVEKTSAE 118

Query: 127 ESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVV 186
           ESD YF SRP  S+IGA AS+QS   +SR  +    +   ++Y  GD  PRP HWGGY V
Sbjct: 119 ESDRYFASRPVGSRIGAWASEQSTVIDSRATLEAREKAFSERY--GDDPPRPPHWGGYRV 176

Query: 187 IPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           +P  +EFWQG+  R+HDR+V+ R    +   PH      GW   RL P
Sbjct: 177 VPDTLEFWQGRPSRLHDRLVYTR----DAAAPH------GWTISRLSP 214

Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).

Burkholderia multivorans (strain ATCC 17616 / 249) (taxid: 395019)

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
307177874	238	Pyridoxine-5'-phosphate oxidase [Campono	0.688	0.957	0.549	2e-67
383855346	243	PREDICTED: pyridoxine-5'-phosphate oxida	0.682	0.930	0.558	7e-67
91091332	226	PREDICTED: similar to pyridoxamine-phosp	0.676	0.991	0.548	1e-65
348562297	260	PREDICTED: pyridoxine-5'-phosphate oxida	0.691	0.880	0.534	5e-65
332024334	300	Pyridoxine-5'-phosphate oxidase [Acromyr	0.688	0.76	0.522	9e-65
340716790	264	PREDICTED: pyridoxine-5'-phosphate oxida	0.697	0.875	0.529	1e-64
380021274	241	PREDICTED: pyridoxine-5'-phosphate oxida	0.688	0.946	0.532	7e-64
432925200	276	PREDICTED: pyridoxine-5'-phosphate oxida	0.691	0.829	0.536	7e-64
431890728	261	Pyridoxine-5'-phosphate oxidase [Pteropu	0.691	0.877	0.532	1e-63
66522796	241	PREDICTED: pyridoxine-5'-phosphate oxida	0.679	0.933	0.543	1e-63

>gi|307177874|gb|EFN66834.1| Pyridoxine-5'-phosphate oxidase [Camponotus floridanus]

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 127/231 (54%), Positives = 166/231 (71%), Gaps = 3/231 (1%)

Query: 6   TTDLKDKRVPYKSRNEVLLEKDIV-KEPFKLFESWFHEANNTPGIIEANAMFIATSTKNG 64
           T D+ D R+ YK ++E   E +++ KEP   F++WF E  NTP I+E NAMF+AT+T++G
Sbjct: 9   TVDIGDMRIKYKDKSETFTEDNLISKEPIGQFKAWFEEVCNTPQILEPNAMFLATATRDG 68

Query: 65  IPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTS 124
           +PS R VLLK +G  GF F+TNY+SRKG+ELAENP  +L FYWE L+RSVRIEG  +KTS
Sbjct: 69  VPSLRAVLLKGFGTEGFKFYTNYDSRKGHELAENPHVALTFYWEALRRSVRIEGIAKKTS 128

Query: 125 DKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGY 184
            ++SD YFQSRPYA++IG+++S QS    SR  +     EL  K+ EG  V RP  WGGY
Sbjct: 129 AEDSDRYFQSRPYANQIGSMSSKQSSVIASRQTLIVKERELLAKFPEGQ-VKRPDCWGGY 187

Query: 185 VVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPL-GPHSHEGEDGWYYERLFP 234
           +V+P V+EFWQGQSDR+HDRI F+R  P E +     H+GE+GW YERL P
Sbjct: 188 LVVPHVVEFWQGQSDRLHDRIRFRRTKPNEKIDNILVHKGENGWVYERLSP 238

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855346|ref|XP_003703175.1| PREDICTED: pyridoxine-5'-phosphate oxidase-like [Megachile rotundata]

 Score =  260 bits (664), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 128/229 (55%), Positives = 162/229 (70%), Gaps = 3/229 (1%)

Query: 8   DLKDKRVPYKSRNEVLLEKDIV-KEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIP 66
           D+   R+ YK ++E   E  +V KEP   F++WF EA  TP I EANAMF+ T+TK+GIP
Sbjct: 16  DIGGMRLKYKDKSETFTEDHLVSKEPIGQFKAWFEEACKTPQIFEANAMFLGTATKDGIP 75

Query: 67  SGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDK 126
           S R VLLK YG +GF F+TNY SRKG ELAENP A+L FYWEPL+R VR+EG V+KTS +
Sbjct: 76  SVRAVLLKGYGTDGFKFYTNYESRKGRELAENPNAALTFYWEPLRRGVRVEGKVKKTSAE 135

Query: 127 ESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVV 186
           +SD YF SRPY S+IG++AS QS    SR  +     EL  ++ EG  V RP+ WGGY+V
Sbjct: 136 DSDQYFNSRPYPSQIGSMASKQSTVIASRQTLMVKERELTAQFPEGQ-VKRPEWWGGYIV 194

Query: 187 IPKVIEFWQGQSDRVHDRIVFKRPVPGEPL-GPHSHEGEDGWYYERLFP 234
           +P  +EFWQGQSDR+HDRI F+RP P E +     H+G++GW YERL P
Sbjct: 195 VPHSVEFWQGQSDRLHDRIRFRRPKPKEKIDNVLVHQGDNGWVYERLSP 243

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091332|ref|XP_971715.1| PREDICTED: similar to pyridoxamine-phosphate oxidase [Tribolium castaneum]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 125/228 (54%), Positives = 155/228 (67%), Gaps = 4/228 (1%)

Query: 8   DLKDKRVPYKSRNEVLLEKDI-VKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIP 66
           D+   R  Y  R  + LE+DI VKEPF LFE WF    N P ++E NAM ++T+TK+GIP
Sbjct: 2   DISAIRTNYNDRTNLFLEEDIEVKEPFHLFEKWFSIVRNNPTVVEPNAMCLSTATKSGIP 61

Query: 67  SGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDK 126
           S R VL K Y K GF FFT+Y SRKG EL ENP  +L FYW    RSVRIEGHVEK    
Sbjct: 62  SARFVLCKGYSKEGFRFFTHYTSRKGQELEENPNCALTFYWAFCNRSVRIEGHVEKLPFS 121

Query: 127 ESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVV 186
            +D+YF SRPY S+IGA+ S+QS+P  +R+ ++   +EL+  Y EG  VPRP  WGGY+V
Sbjct: 122 AADEYFHSRPYQSQIGALCSNQSKPIVNRNVLANKEQELKGLYGEGQ-VPRPPQWGGYIV 180

Query: 187 IPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
            P  IEFWQGQ+DR+HDRI FK+ V  +  G  +HEG +GW YERL P
Sbjct: 181 RPHTIEFWQGQTDRIHDRIRFKKGVQAD--GVLTHEGAEGWVYERLAP 226

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348562297|ref|XP_003466947.1| PREDICTED: pyridoxine-5'-phosphate oxidase-like [Cavia porcellus]

 Score =  254 bits (648), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 124/232 (53%), Positives = 159/232 (68%), Gaps = 3/232 (1%)

Query: 5   STTDLKDKRVPYKSRNEVLLEKDIVK-EPFKLFESWFHEANNTPGIIEANAMFIATSTKN 63
           +  DL   R  Y+   E   E  +   +P K F SWF EA   P I EANAM +AT T+ 
Sbjct: 30  AVMDLGPMRKSYRGDREAFEETQLASLDPIKQFTSWFEEAVQCPDIGEANAMCLATCTRE 89

Query: 64  GIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKT 123
           G PS RM+LLK + ++GF FFTN+ SRKG EL  NP ASL FYWEPL R VR+EG V++ 
Sbjct: 90  GKPSARMLLLKGFSQDGFRFFTNFESRKGKELDSNPFASLVFYWEPLHRQVRVEGRVQRL 149

Query: 124 SDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGG 183
            + E++ YF SRP +S+IGA+ S QS     R+ + K  EEL Q Y +G  VP+PK+WGG
Sbjct: 150 PEAEAESYFHSRPKSSQIGAVVSQQSSVIPDREYLRKKNEELEQLY-QGQEVPKPKYWGG 208

Query: 184 YVVIPKVIEFWQGQSDRVHDRIVFKRPVP-GEPLGPHSHEGEDGWYYERLFP 234
           Y+++P+VIEFWQGQ++R+HDRIVF+R +P GE LGP +H GEDGW YERL P
Sbjct: 209 YLLVPQVIEFWQGQTNRLHDRIVFRRGLPSGESLGPMTHCGEDGWLYERLAP 260

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332024334|gb|EGI64533.1| Pyridoxine-5'-phosphate oxidase [Acromyrmex echinatior]

 Score =  253 bits (646), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 126/241 (52%), Positives = 166/241 (68%), Gaps = 13/241 (5%)

Query: 6   TTDLKDKRVPYKSRNEVLLEKDIV-KEPFKLFESWFHEANNTPGIIEANAMFIATSTK-- 62
           T D+ D R+ YK ++E   E D++ KEP   F++WF EA NTPGI+E NAM +AT+T+  
Sbjct: 61  TVDIGDMRIKYKDKHETFTEDDLISKEPMGQFKAWFEEACNTPGILEPNAMLLATATRQH 120

Query: 63  --------NGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSV 114
                   +GIPS R++LLK +G  GF F+TNY+SRKG+ELAENP A+L FYWE L+RSV
Sbjct: 121 FFNLKIISDGIPSVRVLLLKGFGTEGFKFYTNYDSRKGHELAENPHAALTFYWESLRRSV 180

Query: 115 RIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDY 174
           RIEG  +KTS ++SD YF+SRPY ++IG+ AS QS    SR  +    +EL  K+ +   
Sbjct: 181 RIEGIAKKTSAEDSDHYFRSRPYENQIGSTASKQSSVIASRQTLIIKEKELLAKFPKNQ- 239

Query: 175 VPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPL-GPHSHEGEDGWYYERLF 233
           V RP  WGGY+++P  +EFWQGQSDR+HDRI F+RP   E +     HEG+DGW YERL 
Sbjct: 240 VKRPACWGGYLIVPHSVEFWQGQSDRLHDRIRFRRPKTNEKIDNILVHEGKDGWVYERLS 299

Query: 234 P 234
           P
Sbjct: 300 P 300

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716790|ref|XP_003396876.1| PREDICTED: pyridoxine-5'-phosphate oxidase-like [Bombus terrestris]

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 124/234 (52%), Positives = 161/234 (68%), Gaps = 3/234 (1%)

Query: 3   AESTTDLKDKRVPYKSRNEVLLEKDIV-KEPFKLFESWFHEANNTPGIIEANAMFIATST 61
           A+   D+ D R+ YK RNE   E+ +V KEP   F++WF EA+  P I E N M++AT+T
Sbjct: 32  AKFGVDIGDMRIRYKGRNETFTEEQLVSKEPIGQFKAWFEEASKDPQIFEPNTMYLATAT 91

Query: 62  KNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVE 121
           KNGIPS R VLLK YG +GF F+TNY SRKG ++A+N   +  FYW+ L+R VRIEG   
Sbjct: 92  KNGIPSIRPVLLKHYGNDGFKFYTNYESRKGRDIAQNSNVAAYFYWQSLRRGVRIEGRAV 151

Query: 122 KTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHW 181
           KTS ++SDDYFQ+RPYAS+IG+++S QS    SR+ +     EL  ++ EG  V RP  W
Sbjct: 152 KTSPEDSDDYFQTRPYASQIGSMSSKQSSVIASRETLIVKERELLAQFPEGQ-VKRPDCW 210

Query: 182 GGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGP-HSHEGEDGWYYERLFP 234
           GGY++IP  +EFWQGQSDR+HDRI F+RP P E +     H G+DGW YERL P
Sbjct: 211 GGYIIIPHSVEFWQGQSDRLHDRIRFRRPTPNEKIDDVLLHRGDDGWVYERLSP 264

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021274|ref|XP_003694495.1| PREDICTED: pyridoxine-5'-phosphate oxidase-like [Apis florea]

 Score =  250 bits (638), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 123/231 (53%), Positives = 162/231 (70%), Gaps = 3/231 (1%)

Query: 6   TTDLKDKRVPYKSRNEVLLEKDIV-KEPFKLFESWFHEANNTPGIIEANAMFIATSTKNG 64
             ++ D R+PYK +NE   E  +V KEP   F++WF EA   P I EAN MF+AT+TK+G
Sbjct: 12  NVNIGDMRIPYKDKNETFTENHLVSKEPIGQFKAWFDEACKIPQIFEANTMFLATATKDG 71

Query: 65  IPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTS 124
           IPS R VLLK YG++GF F+TNY SRK  E+AENP  ++ FYW+PL RSVRI G ++KTS
Sbjct: 72  IPSVRPVLLKDYGEDGFKFYTNYESRKAREIAENPNVAVNFYWQPLHRSVRIAGTIKKTS 131

Query: 125 DKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGY 184
            ++S+ YFQSRPYAS+IG++AS QS    +R+ +     EL  ++ EG  V +P  WGGY
Sbjct: 132 LEDSERYFQSRPYASQIGSMASKQSSVIANRNTLIIKERELLAQFPEGK-VKKPDWWGGY 190

Query: 185 VVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPL-GPHSHEGEDGWYYERLFP 234
           ++IP  IEFWQGQSDR+HDRI F+R  P E +     H+G++GW YERL P
Sbjct: 191 IIIPHSIEFWQGQSDRLHDRIHFRRLKPNEKIDNVLVHQGDNGWVYERLSP 241

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432925200|ref|XP_004080693.1| PREDICTED: pyridoxine-5'-phosphate oxidase-like [Oryzias latipes]

 Score =  250 bits (638), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 124/231 (53%), Positives = 153/231 (66%), Gaps = 2/231 (0%)

Query: 5   STTDLKDKRVPYKSRNEVLLEKDIVK-EPFKLFESWFHEANNTPGIIEANAMFIATSTKN 63
           +T DL + R  YK   E   E  +V  +P K F +WF EA   P I EANAM +AT+ ++
Sbjct: 47  TTMDLSNMRKKYKGDAECFEESQLVSFDPIKQFGNWFDEATKCPEIGEANAMCLATANRD 106

Query: 64  GIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKT 123
           G PS RMVLLK Y   GF FF+NY SRKG EL  NP A L FYWEPL R +RIEG VE+ 
Sbjct: 107 GRPSARMVLLKGYSNEGFRFFSNYESRKGTELESNPNACLVFYWEPLNRQIRIEGSVERI 166

Query: 124 SDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGG 183
             + S DYF SRP +S+IGA+ S QS P  +RD + +   EL +KYK+ + VP P +WGG
Sbjct: 167 PFQSSCDYFHSRPKSSQIGAVVSRQSTPVPNRDYLRQKNAELEEKYKDKE-VPMPDYWGG 225

Query: 184 YVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           Y+V P +IEFWQGQ++R+HDRIVF R   GE LG   HEGE GW Y+RL P
Sbjct: 226 YLVKPHLIEFWQGQTNRLHDRIVFTRMKEGEKLGEFQHEGEAGWVYQRLAP 276

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|431890728|gb|ELK01607.1| Pyridoxine-5'-phosphate oxidase [Pteropus alecto]

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/233 (53%), Positives = 161/233 (69%), Gaps = 4/233 (1%)

Query: 5   STTDLKDKRVPYKSRNEVLLEKDIVK-EPFKLFESWFHEANNTPGIIEANAMFIATSTKN 63
           +  DL   R  Y+   E   E  +   +P K F +WF EA   P I EANAM +ATST++
Sbjct: 30  AVMDLGPMRKSYRGDREAFEEAQLTSLDPMKQFATWFEEAVQCPDIGEANAMCLATSTRD 89

Query: 64  GIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKT 123
           G PS RMVLLK +GK+GF FFTN++SRKG EL  NP ASL FYWEPL R VR+EG V+K 
Sbjct: 90  GKPSARMVLLKGFGKDGFRFFTNFDSRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKL 149

Query: 124 SDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGG 183
            ++E+  YF SRP +S+IGA+ S QS    SR+ + K  EEL + Y+E + VP+PK+WGG
Sbjct: 150 PEEEATCYFHSRPKSSQIGAVVSHQSSVIPSREYLRKKNEELEKLYQEQE-VPKPKYWGG 208

Query: 184 YVVIPKVIEFWQGQSDRVHDRIVFKRPVPG--EPLGPHSHEGEDGWYYERLFP 234
           Y++ P+VIEFWQGQ++R+HDRIVF+R +P    PLGP +H GE  W +ERL P
Sbjct: 209 YILYPQVIEFWQGQTNRLHDRIVFRRGLPTGDSPLGPMTHRGEGDWLFERLAP 261

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|66522796|ref|XP_392591.2| PREDICTED: pyridoxine-5'-phosphate oxidase-like [Apis mellifera]

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/228 (54%), Positives = 158/228 (69%), Gaps = 3/228 (1%)

Query: 9   LKDKRVPYKSRNEVLLEKDIV-KEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPS 67
           + D R+ YK +NE   E  +V KEP   F +WF EA   P I EAN MF+AT+TKNGIPS
Sbjct: 15  IGDMRIAYKDKNETFTEDHLVSKEPIGQFRAWFDEACKIPQIFEANTMFLATATKNGIPS 74

Query: 68  GRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKE 127
            R VLLK YG++GF F+TNY SRK  E+AENP   + FYW+PL RSVRI G ++KTS K+
Sbjct: 75  VRPVLLKDYGEDGFKFYTNYESRKAREIAENPNVEVNFYWQPLHRSVRIAGTIKKTSLKD 134

Query: 128 SDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVI 187
           S+ YFQSRPYAS+IG++AS QS    +R+ +     EL  ++ EG  V +P  WGGY++I
Sbjct: 135 SERYFQSRPYASQIGSMASKQSSVIANRNTLIIKERELLAQFPEGK-VKKPDWWGGYIII 193

Query: 188 PKVIEFWQGQSDRVHDRIVFKRPVPGEPL-GPHSHEGEDGWYYERLFP 234
           P  IEFWQGQSDR+HDRI F+R  P E +     H+G++GW YERL P
Sbjct: 194 PHSIEFWQGQSDRLHDRIHFRRLKPNEKIDNVLVHQGDNGWVYERLSP 241

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
UNIPROTKB|E2QTE2	261	PNPO "Uncharacterized protein"	0.682	0.865	0.534	4.2e-63
RGD|621456	261	Pnpo "pyridoxine 5'-phosphate	0.682	0.865	0.539	1.1e-62
MGI|MGI:2144151	261	Pnpo "pyridoxine 5'-phosphate	0.682	0.865	0.534	3e-62
UNIPROTKB|Q9NVS9	261	PNPO "Pyridoxine-5'-phosphate	0.682	0.865	0.534	6.2e-62
UNIPROTKB|Q5E9K3	261	PNPO "Pyridoxine-5'-phosphate	0.682	0.865	0.530	1e-61
ZFIN|ZDB-GENE-060602-2	267	pnpo "pyridoxine 5'-phosphate	0.691	0.857	0.525	5.5e-61
UNIPROTKB|B4E1D7	243	PNPO "Pyridoxine-5'-phosphate	0.371	0.506	0.531	9.9e-54
UNIPROTKB|F1RWH7	213	PNPO "Uncharacterized protein"	0.601	0.934	0.512	8.3e-51
UNIPROTKB|B4E152	218	PNPO "cDNA FLJ59599, highly si	0.317	0.481	0.537	4.7e-50
FB|FBgn0051472	246	CG31472 [Drosophila melanogast	0.691	0.930	0.472	7.4e-50

UNIPROTKB|E2QTE2 PNPO "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 123/230 (53%), Positives = 162/230 (70%)

Query:     8 DLKDKRVPYKSRNEVLLEKDIVK-EPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIP 66
             DL   R  Y+   E   E  +   +P K F +WF EA   P I EANAM +AT T++G P
Sbjct:    33 DLGPMRKSYRGDREAFEETQLTSLDPMKQFATWFEEAVQCPDIGEANAMCLATCTRDGKP 92

Query:    67 SGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDK 126
             S RMVLLK +GK+GF FFTN+ SRKG EL  NP ASL FYWEPL R VR+EG V+K  ++
Sbjct:    93 SARMVLLKGFGKDGFRFFTNFESRKGRELDSNPFASLVFYWEPLNRQVRVEGSVKKLPEE 152

Query:   127 ESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVV 186
             E++ YF SRP +S+IGA+ S QS    +R+ + K  EEL Q Y+E + VP+PK+WGGY++
Sbjct:   153 EAECYFHSRPKSSQIGAVVSHQSSVIPNREYLRKKNEELEQLYQEQE-VPKPKYWGGYIL 211

Query:   187 IPKVIEFWQGQSDRVHDRIVFKRPVP-GE-PLGPHSHEGEDGWYYERLFP 234
              P+V+EFWQGQ++R+HDRI+F+R +P G+ PLGP +H GE+ W YERL P
Sbjct:   212 YPQVMEFWQGQTNRLHDRIIFRRGLPTGDSPLGPMTHRGEEDWLYERLAP 261

GO:0010181 "FMN binding" evidence=IEA

GO:0008615 "pyridoxine biosynthetic process" evidence=IEA

GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=IEA

RGD|621456 Pnpo "pyridoxine 5'-phosphate oxidase" [Rattus norvegicus (taxid:10116)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 124/230 (53%), Positives = 161/230 (70%)

Query:     8 DLKDKRVPYKSRNEVLLEKDIVK-EPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIP 66
             DL   R  Y+   E   E  +   +P K F SWF EA   P I EANAM +AT T++G P
Sbjct:    33 DLGPMRKSYRGDREAFEEAHLTSLDPMKQFASWFEEAVQCPDIGEANAMCLATCTRDGKP 92

Query:    67 SGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDK 126
             S RM+LLK +GK+GF FFTNY SRKG EL  NP ASL FYWEPL R VR+EG V+K  +K
Sbjct:    93 SARMLLLKGFGKDGFRFFTNYESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEK 152

Query:   127 ESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVV 186
             E+++YF SRP +S+IGA+ S QS     R+ + K  EEL Q Y+E + VP+P++WGGY++
Sbjct:   153 EAENYFHSRPKSSQIGAVVSRQSSVIPDREYLRKKNEELGQLYREQE-VPKPEYWGGYIL 211

Query:   187 IPKVIEFWQGQSDRVHDRIVFKRPVP-GE-PLGPHSHEGEDGWYYERLFP 234
              P+V+EFWQGQ++R+HDRIVF+R +  G+ PLGP +H GE+ W YERL P
Sbjct:   212 YPQVMEFWQGQTNRLHDRIVFRRGLATGDSPLGPMTHHGEEDWVYERLAP 261

GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=IDA

GO:0008615 "pyridoxine biosynthetic process" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0042823 "pyridoxal phosphate biosynthetic process" evidence=IDA

MGI|MGI:2144151 Pnpo "pyridoxine 5'-phosphate oxidase" [Mus musculus (taxid:10090)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 123/230 (53%), Positives = 161/230 (70%)

Query:     8 DLKDKRVPYKSRNEVLLEKDIVK-EPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIP 66
             DL   R  Y+   E   E  +   +P K F SWF EA   P I EANAM +AT T++G P
Sbjct:    33 DLGPMRKSYRGDREAFEETHLTSLDPMKQFASWFDEAVQCPDIGEANAMCVATCTRDGKP 92

Query:    67 SGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDK 126
             S RM+LLK +GK+GF FFTNY SRKG EL  NP ASL FYWEPL R VR+EG V+K  +K
Sbjct:    93 SARMLLLKGFGKDGFRFFTNYESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEK 152

Query:   127 ESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVV 186
             E+++YF SRP +S+IGA+ S QS     R+ + K  EEL Q Y++ + VP+P++WGGY++
Sbjct:   153 EAENYFHSRPKSSQIGAVVSRQSSVIPDREYLRKKNEELGQLYQDQE-VPKPEYWGGYIL 211

Query:   187 IPKVIEFWQGQSDRVHDRIVFKRPVP-GE-PLGPHSHEGEDGWYYERLFP 234
              P+V+EFWQGQ++R+HDRIVF+R +  G+ PLGP +H GE+ W YERL P
Sbjct:   212 YPQVMEFWQGQTNRLHDRIVFRRGLATGDSPLGPMTHHGEEDWVYERLAP 261

GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008615 "pyridoxine biosynthetic process" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016638 "oxidoreductase activity, acting on the CH-NH2 group of donors" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q9NVS9 PNPO "Pyridoxine-5'-phosphate oxidase" [Homo sapiens (taxid:9606)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 123/230 (53%), Positives = 160/230 (69%)

Query:     8 DLKDKRVPYKSRNEVLLEKDIVK-EPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIP 66
             DL   R  Y+   E   E  +   +P K F +WF EA   P I EANAM +AT T++G P
Sbjct:    33 DLGPMRKSYRGDREAFEETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATCTRDGKP 92

Query:    67 SGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDK 126
             S RM+LLK +GK+GF FFTN+ SRKG EL  NP ASL FYWEPL R VR+EG V+K  ++
Sbjct:    93 SARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEE 152

Query:   127 ESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVV 186
             E++ YF SRP +S+IGA+ S QS     R+ + K  EEL Q Y++ + VP+PK WGGYV+
Sbjct:   153 EAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQE-VPKPKSWGGYVL 211

Query:   187 IPKVIEFWQGQSDRVHDRIVFKRPVP-GE-PLGPHSHEGEDGWYYERLFP 234
              P+V+EFWQGQ++R+HDRIVF+R +P G+ PLGP +H GE+ W YERL P
Sbjct:   212 YPQVMEFWQGQTNRLHDRIVFRRGLPTGDSPLGPMTHRGEEDWLYERLAP 261

GO:0010181 "FMN binding" evidence=IEA

GO:0008615 "pyridoxine biosynthetic process" evidence=IEA

GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006766 "vitamin metabolic process" evidence=TAS

GO:0006767 "water-soluble vitamin metabolic process" evidence=TAS

GO:0042816 "vitamin B6 metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q5E9K3 PNPO "Pyridoxine-5'-phosphate oxidase" [Bos taurus (taxid:9913)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 122/230 (53%), Positives = 161/230 (70%)

Query:     8 DLKDKRVPYKSRNEVLLEKDIVK-EPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIP 66
             DL   R  Y+   E   E  +   +P K F +WF EA   P I+EANAM +AT T++G P
Sbjct:    33 DLGPMRKTYRGDPEAFEETHLTSLDPVKQFAAWFEEAVQCPDIMEANAMCLATCTRDGKP 92

Query:    67 SGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDK 126
             S RMVLLK +GK+GF FFTN+ SRKG EL  NP ASL FYWEPL R VR+EG V+K  ++
Sbjct:    93 SARMVLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLHRQVRVEGPVKKLPEE 152

Query:   127 ESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVV 186
             E++ YF SRP +S+IGA+ S QS     R+ + K  +EL Q Y+E + VP+PK+WGGY++
Sbjct:   153 EAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNKELEQLYQEQE-VPKPKYWGGYIL 211

Query:   187 IPKVIEFWQGQSDRVHDRIVFKRPV-PGE-PLGPHSHEGEDGWYYERLFP 234
              P+V+EFWQGQ++R+HDRIVF+R +  G+ PLGP +H GE+ W YERL P
Sbjct:   212 YPQVMEFWQGQTNRLHDRIVFRRGLLTGDSPLGPMTHRGEEDWVYERLAP 261

GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=IEA

GO:0008615 "pyridoxine biosynthetic process" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

ZFIN|ZDB-GENE-060602-2 pnpo "pyridoxine 5'-phosphate oxidase" [Danio rerio (taxid:7955)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 122/232 (52%), Positives = 154/232 (66%)

Query:     5 STTDLKDKRVPYKSRNEVLLEKDIVK-EPFKLFESWFHEANNTPGIIEANAMFIATSTKN 63
             ++ DL + R  YKS  E   E  +   +P K F SWF +A   P + EANAM +AT+TK+
Sbjct:    37 TSMDLSNMRKTYKSDQECFEENQLASLDPIKQFGSWFDQATKCPEVGEANAMCLATATKD 96

Query:    64 GIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKT 123
             G PS RMVLLK Y + GF FF+NY SRKG+EL  NP A L FYWEPL R +RIEG VE+ 
Sbjct:    97 GHPSARMVLLKGYSEEGFCFFSNYESRKGSELESNPHACLVFYWEPLNRQIRIEGTVERI 156

Query:   124 SDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGG 183
               ++S +YF SRP +S+IGA+ S QS    SR  +     EL +KYK+ D VP P +WGG
Sbjct:   157 PYEKSREYFHSRPKSSQIGAVVSRQSTVIPSRQYLRDKNAELEEKYKDTD-VPMPDYWGG 215

Query:   184 YVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEP-LGPHSHEGEDGWYYERLFP 234
             Y+V P +IEFWQGQ++R+HDRIVF RP  GE  LG   H+ E GW Y+RL P
Sbjct:   216 YIVKPSLIEFWQGQTNRLHDRIVFLRPKGGETELGDMQHQAEGGWIYQRLSP 267

GO:0016638 "oxidoreductase activity, acting on the CH-NH2 group of donors" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008615 "pyridoxine biosynthetic process" evidence=IEA

UNIPROTKB|B4E1D7 PNPO "Pyridoxine-5'-phosphate oxidase" [Homo sapiens (taxid:9606)]

 Score = 356 (130.4 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
 Identities = 67/126 (53%), Positives = 93/126 (73%)

Query:   111 KRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYK 170
             K  VR+EG V+K  ++E++ YF SRP +S+IGA+ S QS     R+ + K  EEL Q Y+
Sbjct:   119 KELVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQ 178

Query:   171 EGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVP-GE-PLGPHSHEGEDGWY 228
             + + VP+PK WGGYV+ P+V+EFWQGQ++R+HDRIVF+R +P G+ PLGP +H GE+ W 
Sbjct:   179 DQE-VPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGDSPLGPMTHRGEEDWL 237

Query:   229 YERLFP 234
             YERL P
Sbjct:   238 YERLAP 243

GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=IEA

GO:0008615 "pyridoxine biosynthetic process" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

UNIPROTKB|F1RWH7 PNPO "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 106/207 (51%), Positives = 138/207 (66%)

Query:    31 EPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSR 90
             +P K F +WF EA   P I EANAM +AT T+ G P  R+  L  +    F FF N  S 
Sbjct:    12 DPVKQFAAWFEEAVQCPAIGEANAMCLATCTRRGAPGXRVHFLSHF----FSFFLNSRSW 67

Query:    91 KGNELAE-NPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQS 149
                 + + NP ASL FYWEPL R VR+EG V+K  ++E++ YF SRP +S+IGA+ S QS
Sbjct:    68 PFVNIQDSNPFASLVFYWEPLNRQVRLEGPVKKLPEEEAESYFHSRPRSSQIGAVVSHQS 127

Query:   150 RPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKR 209
                  R+ + K  EEL Q Y+E + VPRPK+WGGY++ P+VIEFWQGQ++R+HDRIVF+R
Sbjct:   128 SVIPDREYLRKKNEELEQLYQEQE-VPRPKYWGGYILYPQVIEFWQGQTNRLHDRIVFRR 186

Query:   210 -PVPGE-PLGPHSHEGEDGWYYERLFP 234
              P  G+ PLGP +H GE+ W YERL P
Sbjct:   187 GPPTGDSPLGPMTHRGEEDWLYERLAP 213

GO:0010181 "FMN binding" evidence=IEA

GO:0008615 "pyridoxine biosynthetic process" evidence=IEA

GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=IEA

UNIPROTKB|B4E152 PNPO "cDNA FLJ59599, highly similar to Pyridoxine-5'-phosphate oxidase (EC 1.4.3.5)" [Homo sapiens (taxid:9606)]

 Score = 280 (103.6 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
 Identities = 57/106 (53%), Positives = 68/106 (64%)

Query:     8 DLKDKRVPYKSRNEVLLEKDIVK-EPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIP 66
             DL   R  Y+   E   E  +   +P K F +WF EA   P I EANAM +AT T++G P
Sbjct:    33 DLGPMRKSYRGDREAFEETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATCTRDGKP 92

Query:    67 SGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKR 112
             S RM+LLK +GK+GF FFTN+ SRKG EL  NP ASL FYWEPL R
Sbjct:    93 SARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNR 138

GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=IEA

GO:0008615 "pyridoxine biosynthetic process" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

FB|FBgn0051472 CG31472 [Drosophila melanogaster (taxid:7227)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 110/233 (47%), Positives = 140/233 (60%)

Query:     5 STTDLKDKRVPYKSRNEVLLEKDI-VKEPFKLFESWFHEANNTPGIIEANAMFIATSTKN 63
             S   L   R+ Y  R +  LE +I VK PF +F  W   A  TP I+E NA  +AT +  
Sbjct:    15 SEVPLSALRLKYCERKDAFLEDNIKVKNPFCVFRDWLELALKTPEILEPNAAALATVSAE 74

Query:    64 GIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKT 123
             G PS R VL+K     GF FFTNY SRK  ++  NP  +++FYW PL+RSVRIEG  EK 
Sbjct:    75 GRPSNRYVLVKEATAEGFTFFTNYGSRKAEDIKSNPYVAISFYWLPLRRSVRIEGVAEKI 134

Query:   124 SDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGG 183
             S ++S  YF  RP AS+IGA AS QS+   SR  +  +   ++ +      VP P +WGG
Sbjct:   135 SVEDSLKYFHQRPRASQIGAAASPQSQRIPSRSYLDDVEAAIKLELGPDGEVPLP-NWGG 193

Query:   184 YVVIPKVIEFWQGQSDRVHDRIVFKRP--VPGEPLGPHSHEGEDGWYYERLFP 234
             Y+V P +IEFWQGQ+DR+HDRI F+R   V  E      H+GEDGW YERL P
Sbjct:   194 YLVRPDLIEFWQGQTDRLHDRIRFRRGGGVESEVDSKLVHKGEDGWVYERLAP 246

GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=ISS

GO:0008615 "pyridoxine biosynthetic process" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A3N6I1	PDXH_BURP6	1, ., 4, ., 3, ., 5	0.4561	0.6435	0.9953	yes	N/A
B1YVG1	PDXH_BURA4	1, ., 4, ., 3, ., 5	0.4605	0.6435	0.9953	yes	N/A
B1JXH8	PDXH_BURCC	1, ., 4, ., 3, ., 5	0.4649	0.6435	0.9953	yes	N/A
Q9NVS9	PNPO_HUMAN	1, ., 4, ., 3, ., 5	0.5236	0.6918	0.8773	yes	N/A
A4JHA1	PDXH_BURVG	1, ., 4, ., 3, ., 5	0.4561	0.6435	0.9953	yes	N/A
Q3JVD0	PDXH_BURP1	1, ., 4, ., 3, ., 5	0.4561	0.6435	0.9953	yes	N/A
Q3MFQ5	PDXH_ANAVT	1, ., 4, ., 3, ., 5	0.5	0.6042	0.9345	yes	N/A
Q1LK07	PDXH_RALME	1, ., 4, ., 3, ., 5	0.4685	0.6102	0.9528	yes	N/A
A9I847	PDXH_BORPD	1, ., 4, ., 3, ., 5	0.4557	0.6283	0.9904	yes	N/A
A9AGI1	PDXH_BURM1	1, ., 4, ., 3, ., 5	0.4736	0.6435	0.9953	yes	N/A
Q8YXG5	PDXH_NOSS1	1, ., 4, ., 3, ., 5	0.5454	0.5589	0.8644	yes	N/A
A2S933	PDXH_BURM9	1, ., 4, ., 3, ., 5	0.4561	0.6435	0.9953	yes	N/A
A1V1A2	PDXH_BURMS	1, ., 4, ., 3, ., 5	0.4561	0.6435	0.9953	yes	N/A
Q63WN7	PDXH_BURPS	1, ., 4, ., 3, ., 5	0.4561	0.6435	0.9953	yes	N/A
B8HMK7	PDXH_CYAP4	1, ., 4, ., 3, ., 5	0.4323	0.6404	0.9953	yes	N/A
Q5E9K3	PNPO_BOVIN	1, ., 4, ., 3, ., 5	0.5193	0.6918	0.8773	yes	N/A
B3R5Q8	PDXH_CUPTR	1, ., 4, ., 3, ., 5	0.4605	0.6374	0.9952	yes	N/A
Q1BU45	PDXH_BURCA	1, ., 4, ., 3, ., 5	0.4605	0.6435	0.9953	yes	N/A
A0K9Z1	PDXH_BURCH	1, ., 4, ., 3, ., 5	0.4605	0.6435	0.9953	yes	N/A
B0C079	PDXH_ACAM1	1, ., 4, ., 3, ., 5	0.4705	0.6042	0.9132	yes	N/A
Q0BCF1	PDXH_BURCM	1, ., 4, ., 3, ., 5	0.4784	0.6163	0.9532	yes	N/A
Q13UP6	PDXH_BURXL	1, ., 4, ., 3, ., 5	0.5191	0.5438	0.8450	yes	N/A
Q91XF0	PNPO_MOUSE	1, ., 4, ., 3, ., 5	0.5236	0.6918	0.8773	yes	N/A
Q04R37	PDXH_LEPBJ	1, ., 4, ., 3, ., 5	0.5136	0.5468	0.8457	yes	N/A
B2IX27	PDXH_NOSP7	1, ., 4, ., 3, ., 5	0.5238	0.5649	0.8738	yes	N/A
A3MHF0	PDXH_BURM7	1, ., 4, ., 3, ., 5	0.4561	0.6435	0.9953	yes	N/A
Q8DLZ5	PDXH_THEEB	1, ., 4, ., 3, ., 5	0.4803	0.6012	0.9431	yes	N/A
B4E9I1	PDXH_BURCJ	1, ., 4, ., 3, ., 5	0.4649	0.6435	0.9953	yes	N/A
O88794	PNPO_RAT	1, ., 4, ., 3, ., 5	0.5278	0.6918	0.8773	yes	N/A
Q62M91	PDXH_BURMA	1, ., 4, ., 3, ., 5	0.4561	0.6435	0.9953	yes	N/A
A3NS64	PDXH_BURP0	1, ., 4, ., 3, ., 5	0.4561	0.6435	0.9953	yes	N/A
Q04ZE7	PDXH_LEPBL	1, ., 4, ., 3, ., 5	0.5136	0.5468	0.8457	yes	N/A
Q39DH2	PDXH_BURS3	1, ., 4, ., 3, ., 5	0.4832	0.6163	0.9532	yes	N/A
B2SY78	PDXH_BURPP	1, ., 4, ., 3, ., 5	0.5245	0.5438	0.8450	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.4.3	0.691
3rd Layer	1.4.3.5	0.824

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	331
TIGR00558	190	TIGR00558, pdxH, pyridoxamine-phosphate oxidase	1e-96
PRK05679	195	PRK05679, PRK05679, pyridoxamine 5'-phosphate oxid	3e-90
COG0259	214	COG0259, PdxH, Pyridoxamine-phosphate oxidase [Coe	1e-83
PLN03049	462	PLN03049, PLN03049, pyridoxine (pyridoxamine) 5'-p	9e-78
PLN02918	544	PLN02918, PLN02918, pyridoxine (pyridoxamine) 5'-p	3e-65
TIGR00558	190	TIGR00558, pdxH, pyridoxamine-phosphate oxidase	2e-34
PRK05679	195	PRK05679, PRK05679, pyridoxamine 5'-phosphate oxid	5e-32
COG0259	214	COG0259, PdxH, Pyridoxamine-phosphate oxidase [Coe	1e-30
PLN03049	462	PLN03049, PLN03049, pyridoxine (pyridoxamine) 5'-p	5e-29
pfam01243	88	pfam01243, Pyridox_oxidase, Pyridoxamine 5'-phosph	4e-23
PLN02918	544	PLN02918, PLN02918, pyridoxine (pyridoxamine) 5'-p	4e-22
pfam10590	41	pfam10590, PNPOx_C, Pyridoxine 5'-phosphate oxidas	2e-14
pfam01243	88	pfam01243, Pyridox_oxidase, Pyridoxamine 5'-phosph	4e-06
TIGR04026	185	TIGR04026, PPOX_FMN_cyano, PPOX class probable FMN	0.002

>gnl|CDD|211586 TIGR00558, pdxH, pyridoxamine-phosphate oxidase

 Score =  283 bits (727), Expect = 1e-96
 Identities = 103/204 (50%), Positives = 134/204 (65%), Gaps = 14/204 (6%)

Query: 31  EPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSR 90
           +P + FE WF EA     + E NAM +AT   +G PS R+VLLK + + GFVF+TNY SR
Sbjct: 1   DPIEQFERWFEEAIEA-ELPEPNAMTLATVDADGRPSARIVLLKGFDERGFVFYTNYESR 59

Query: 91  KGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSR 150
           KG ELA NP+A+L F W  L+R VRIEG VEK S +ESD YF SRP  S+IGA AS QSR
Sbjct: 60  KGQELAANPKAALLFPWHSLERQVRIEGRVEKVSREESDAYFASRPRGSQIGAWASQQSR 119

Query: 151 PCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRP 210
           P  SR+++ +   EL+ ++ +G+ VPRP+HWGGY V+P  IEFWQG+  R+HDR  ++R 
Sbjct: 120 PIASREELEERFAELKARFPDGE-VPRPEHWGGYRVVPDEIEFWQGRPSRLHDRFRYRR- 177

Query: 211 VPGEPLGPHSHEGEDGWYYERLFP 234
                      +G+  W  ERL P
Sbjct: 178 -----------DGDGSWRIERLAP 190

This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine]. Length = 190

>gnl|CDD|235555 PRK05679, PRK05679, pyridoxamine 5'-phosphate oxidase; Provisional

 Score =  267 bits (685), Expect = 3e-90
 Identities = 103/210 (49%), Positives = 135/210 (64%), Gaps = 15/210 (7%)

Query: 25  EKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFF 84
             D+  EP  LFE W  EA     + + NAM +AT  ++G PS R+VLLK + + GFVF+
Sbjct: 1   RADLPAEPLALFERWLAEAVKA-ELNDPNAMTLATVDEDGRPSQRIVLLKGFDERGFVFY 59

Query: 85  TNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAI 144
           TNY SRKG +LA NP+A+L F W+ L+R VR+EG VEK S +ESD YF SRP  S+IGA 
Sbjct: 60  TNYESRKGRQLAANPKAALLFPWKSLERQVRVEGRVEKVSAEESDAYFASRPRGSQIGAW 119

Query: 145 ASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDR 204
           AS QSRP  SR  +     E++ K+ +G+ VPRP HWGGY V+P+ IEFWQG+  R+HDR
Sbjct: 120 ASKQSRPISSRAALEAKFAEVKAKFAQGE-VPRPPHWGGYRVVPESIEFWQGRPSRLHDR 178

Query: 205 IVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           I+++R              + GW  ERL P
Sbjct: 179 ILYRR-------------DDGGWKIERLAP 195

Length = 195

>gnl|CDD|223337 COG0259, PdxH, Pyridoxamine-phosphate oxidase [Coenzyme metabolism]

 Score =  251 bits (643), Expect = 1e-83
 Identities = 99/204 (48%), Positives = 127/204 (62%), Gaps = 15/204 (7%)

Query: 31  EPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSR 90
            P  LF  W  EA     + E NAM +AT  + G PS R+VLLK   + GFVF+TNY SR
Sbjct: 26  NPLTLFRRWLEEAIRA-EVNEPNAMTLATVDEQGRPSSRIVLLKELDERGFVFYTNYGSR 84

Query: 91  KGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSR 150
           KG ELA NP A+L F W+ L+R VR+EG VE+ SD+ESD YF SRP  S+IGA AS QSR
Sbjct: 85  KGRELAANPYAALLFPWKELERQVRVEGRVERVSDEESDAYFASRPRGSQIGAWASKQSR 144

Query: 151 PCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRP 210
           P  SR  +     EL  K+ +G+ +PRP HWGG+ ++P+ IEFWQG+  R+HDR+ ++R 
Sbjct: 145 PIASRAALEAKVAELTAKFADGE-IPRPPHWGGFRIVPESIEFWQGRPSRLHDRLRYRRD 203

Query: 211 VPGEPLGPHSHEGEDGWYYERLFP 234
                        + GW  ERL P
Sbjct: 204 -------------DGGWKIERLAP 214

Length = 214

>gnl|CDD|215550 PLN03049, PLN03049, pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional

 Score =  244 bits (625), Expect = 9e-78
 Identities = 98/213 (46%), Positives = 136/213 (63%), Gaps = 10/213 (4%)

Query: 22  VLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGF 81
            LLE+ +  +P   F+ WF +A    G+ E NAM +AT+ ++G PS R+VLLK   K GF
Sbjct: 260 ELLEEQVNADPIDQFKEWFDDAV-AAGLREPNAMTLATAGEDGRPSARIVLLKGVDKRGF 318

Query: 82  VFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKI 141
           V++TNY+SRK +EL+ NP+ASL FYW+ L R VR+EG VEK S++ESD YF SRP  S+I
Sbjct: 319 VWYTNYDSRKAHELSANPKASLVFYWDGLHRQVRVEGSVEKVSEEESDQYFHSRPRGSQI 378

Query: 142 GAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRV 201
           GA+ S QS     R  + +  +EL  KY +   +P+PKHWGGY + P++IEFWQG+  R+
Sbjct: 379 GALVSKQSTVIPGRHILDQSYKELEAKYADSSAIPKPKHWGGYRLKPELIEFWQGRESRL 438

Query: 202 HDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           HDR+ + R             G+  W  +RL P
Sbjct: 439 HDRLQYTREEI---------NGKSVWKIDRLAP 462

Length = 462

>gnl|CDD|215496 PLN02918, PLN02918, pyridoxine (pyridoxamine) 5'-phosphate oxidase

 Score =  214 bits (546), Expect = 3e-65
 Identities = 102/227 (44%), Positives = 138/227 (60%), Gaps = 12/227 (5%)

Query: 8   DLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPS 67
           D+   R  Y S    LLE+ +  +P   F  WF EA    G+ E NAM ++T+ K+G PS
Sbjct: 330 DISALRENYISPE--LLEEQVETDPTDQFRKWFDEAV-AAGLREPNAMALSTANKDGKPS 386

Query: 68  GRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKE 127
            RMVLLK   KNGFV++TNY S+KG++L+ENP A+L FYWE L R VR+EG V+K  + E
Sbjct: 387 SRMVLLKGVDKNGFVWYTNYESQKGSDLSENPSAALLFYWEELNRQVRVEGSVQKVPESE 446

Query: 128 SDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVI 187
           S++YF SRP  S+IGAI S QS     R  + +  +EL +KY +G  +P+PK+WGGY + 
Sbjct: 447 SENYFHSRPRGSQIGAIVSKQSSVVPGRHVLYQEYKELEKKYSDGSVIPKPKNWGGYRLK 506

Query: 188 PKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           P + EFWQGQ  R+HDR+ +               G+  W   RL P
Sbjct: 507 PNLFEFWQGQQSRLHDRLQYS---------LQEVNGKPVWKIHRLAP 544

Length = 544

>gnl|CDD|211586 TIGR00558, pdxH, pyridoxamine-phosphate oxidase

 Score =  124 bits (313), Expect = 2e-34
 Identities = 46/85 (54%), Positives = 61/85 (71%), Gaps = 1/85 (1%)

Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
           A NP+A+L F W  L+R VRIEG VEK S +ESD YF SRP  S+IGA AS QSRP  SR
Sbjct: 65  AANPKAALLFPWHSLERQVRIEGRVEKVSREESDAYFASRPRGSQIGAWASQQSRPIASR 124

Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
           +++ +   EL+ ++ +G+ VPRP+H
Sbjct: 125 EELEERFAELKARFPDGE-VPRPEH 148

This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine]. Length = 190

>gnl|CDD|235555 PRK05679, PRK05679, pyridoxamine 5'-phosphate oxidase; Provisional

 Score =  118 bits (297), Expect = 5e-32
 Identities = 45/85 (52%), Positives = 58/85 (68%), Gaps = 1/85 (1%)

Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
           A NP+A+L F W+ L+R VR+EG VEK S +ESD YF SRP  S+IGA AS QSRP  SR
Sbjct: 71  AANPKAALLFPWKSLERQVRVEGRVEKVSAEESDAYFASRPRGSQIGAWASKQSRPISSR 130

Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
             +     E++ K+ +G+ VPRP H
Sbjct: 131 AALEAKFAEVKAKFAQGE-VPRPPH 154

Length = 195

>gnl|CDD|223337 COG0259, PdxH, Pyridoxamine-phosphate oxidase [Coenzyme metabolism]

 Score =  114 bits (288), Expect = 1e-30
 Identities = 45/85 (52%), Positives = 57/85 (67%), Gaps = 1/85 (1%)

Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
           A NP A+L F W+ L+R VR+EG VE+ SD+ESD YF SRP  S+IGA AS QSRP  SR
Sbjct: 90  AANPYAALLFPWKELERQVRVEGRVERVSDEESDAYFASRPRGSQIGAWASKQSRPIASR 149

Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
             +     EL  K+ +G+ +PRP H
Sbjct: 150 AALEAKVAELTAKFADGE-IPRPPH 173

Length = 214

>gnl|CDD|215550 PLN03049, PLN03049, pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional

 Score =  115 bits (290), Expect = 5e-29
 Identities = 42/85 (49%), Positives = 56/85 (65%)

Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
           + NP+ASL FYW+ L R VR+EG VEK S++ESD YF SRP  S+IGA+ S QS     R
Sbjct: 333 SANPKASLVFYWDGLHRQVRVEGSVEKVSEEESDQYFHSRPRGSQIGALVSKQSTVIPGR 392

Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
             + +  +EL  KY +   +P+PKH
Sbjct: 393 HILDQSYKELEAKYADSSAIPKPKH 417

Length = 462

>gnl|CDD|216385 pfam01243, Pyridox_oxidase, Pyridoxamine 5'-phosphate oxidase

 Score = 91.1 bits (227), Expect = 4e-23
 Identities = 32/78 (41%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 51  EANAMFIATSTKNGIPSGRMVLLK-SYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEP 109
           E NA  +AT   +G P+   V  K    +    F TNY+SRK   L ENP+ +L F    
Sbjct: 11  EPNAGVLATVDADGRPNVSPVGFKYGDDRGTIYFATNYDSRKARNLRENPRVALLFGDPE 70

Query: 110 LKRSVRIEGHVEKTSDKE 127
           L+R VRIEG  E  +D E
Sbjct: 71  LRRGVRIEGTAEIVTDGE 88

Length = 88

>gnl|CDD|215496 PLN02918, PLN02918, pyridoxine (pyridoxamine) 5'-phosphate oxidase

 Score = 96.5 bits (240), Expect = 4e-22
 Identities = 41/85 (48%), Positives = 57/85 (67%)

Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
           +ENP A+L FYWE L R VR+EG V+K  + ES++YF SRP  S+IGAI S QS     R
Sbjct: 415 SENPSAALLFYWEELNRQVRVEGSVQKVPESESENYFHSRPRGSQIGAIVSKQSSVVPGR 474

Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
             + +  +EL +KY +G  +P+PK+
Sbjct: 475 HVLYQEYKELEKKYSDGSVIPKPKN 499

Length = 544

>gnl|CDD|204522 pfam10590, PNPOx_C, Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region

 Score = 66.0 bits (162), Expect = 2e-14
 Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 13/54 (24%)

Query: 181 WGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           WGGY V+P+ IEFWQG+  R+HDR+ + R              + GW  ERL P
Sbjct: 1   WGGYRVVPESIEFWQGRPSRLHDRLRYTRE-------------DGGWSIERLAP 41

Pyridoxine 5'-phosphate oxidase (PNPOx) catalyzes the terminal step in the biosynthesis of pyridoxal 5'-phosphate (PLP), a cofactor used by many enzymes involved in amino acid metabolism. The enzyme oxidises either the 4'-hydroxyl group of pyridoxine 5'-phosphate (PNP) or the 4'-primary amine of pyridoxamine 5'-phosphate (PMP) to an aldehyde. PNPOx is a homodimeric enzyme with one flavin mononucleotide (FMN) molecule non-covalently bound to each subunit. This domain represents one of the two dimerisation regions of the protein, located at the edge of the dimer interface, at the C-terminus, being the last three beta strands, S6, S7, and S8 along with the last three residues to the end. In Myxococcus xanthus pdxH, S6 runs from residues 178-192, S7 from 200-206 and S8 from 211-215. the extended loop, of residues 167-177 may well be involved in the pocket formed between the two dimers that positions the FMN molecule. Length = 41

>gnl|CDD|216385 pfam01243, Pyridox_oxidase, Pyridoxamine 5'-phosphate oxidase

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKE 278
            ENP+ +L F    L+R VRIEG  E  +D E
Sbjct: 57  RENPRVALLFGDPELRRGVRIEGTAEIVTDGE 88

Length = 88

>gnl|CDD|188541 TIGR04026, PPOX_FMN_cyano, PPOX class probable FMN-dependent enzyme, alr4036 family

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 57  IATSTKNGIPSGRMVLLKSYGK-NGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVR 115
           +AT T +G P  R V+ + +G  N    FT+  S K  +LA+NP A + +Y+   +   R
Sbjct: 26  LATVTSDGTPRNRTVVFRGWGDSNQLELFTDARSEKIEQLAQNPNAEICWYFPKTREQFR 85

Query: 116 IEGHVEKTSDKESDDYFQSR 135
           + G +   +  +  +  Q+ 
Sbjct: 86  LRGKLTLVTADDDPERLQAH 105

Members of the PPOX family (see pfam01243) may contain either FMN or F420 as cofactor. This subfamily described here is widespread in Cyanobacteria and plants, and is named for alr4036 from Nostoc sp. PCC 7120. The family consists mostly of proteins from species that lack the capability to synthesize F420, so it is probable that all members bind FMN rather than F420 [Unknown function, Enzymes of unknown specificity]. Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	331
COG0259	214	PdxH Pyridoxamine-phosphate oxidase [Coenzyme meta	100.0
KOG2586|consensus	228		100.0
PLN02918	544	pyridoxine (pyridoxamine) 5'-phosphate oxidase	100.0
PLN03049	462	pyridoxine (pyridoxamine) 5'-phosphate oxidase; Pr	100.0
TIGR00558	217	pdxH pyridoxamine-phosphate oxidase. This model is	100.0
PRK05679	195	pyridoxamine 5'-phosphate oxidase; Provisional	100.0
COG0259	214	PdxH Pyridoxamine-phosphate oxidase [Coenzyme meta	100.0
KOG2586|consensus	228		100.0
PLN02918	544	pyridoxine (pyridoxamine) 5'-phosphate oxidase	100.0
PLN03049	462	pyridoxine (pyridoxamine) 5'-phosphate oxidase; Pr	99.96
PRK05679	195	pyridoxamine 5'-phosphate oxidase; Provisional	99.89
TIGR00558	217	pdxH pyridoxamine-phosphate oxidase. This model is	99.89
PF12766	100	Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase	99.79
COG3871	145	Uncharacterized stress protein (general stress pro	99.79
PF01243	89	Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase	99.62
TIGR03618	117	Rv1155_F420 PPOX class probable F420-dependent enz	99.62
TIGR03667	130	Rv3369 PPOX class probable F420-dependent enzyme,	99.59
COG5135	245	Uncharacterized conserved protein [Function unknow	99.48
TIGR03666	132	Rv2061_F420 PPOX class probable F420-dependent enz	99.34
TIGR03668	141	Rv0121_F420 PPOX class probable F420-dependent enz	99.21
KOG4558|consensus	251		99.15
PF10590	42	PNPOx_C: Pyridoxine 5'-phosphate oxidase C-termina	99.02
COG5015	132	Uncharacterized conserved protein [Function unknow	98.85
PRK06733	151	hypothetical protein; Provisional	98.52
PRK03467	144	hypothetical protein; Provisional	98.48
PF01243	89	Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase	98.32
PF12900	143	Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; I	98.29
TIGR03618	117	Rv1155_F420 PPOX class probable F420-dependent enz	98.13
TIGR03667	130	Rv3369 PPOX class probable F420-dependent enzyme,	97.79
COG3467	166	Predicted flavin-nucleotide-binding protein [Gener	97.77
PF13883	170	Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase	97.69
PF12766	100	Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase	97.66
TIGR00026	113	hi_GC_TIGR00026 deazaflavin-dependent nitroreducta	96.92
COG3871	145	Uncharacterized stress protein (general stress pro	95.55
TIGR03666	132	Rv2061_F420 PPOX class probable F420-dependent enz	95.05
COG3576	173	Predicted flavin-nucleotide-binding protein struct	93.93
PF04075	132	DUF385: Domain of unknown function (DUF385) ; Inte	93.91
COG5135	245	Uncharacterized conserved protein [Function unknow	90.77
TIGR03668	141	Rv0121_F420 PPOX class probable F420-dependent enz	89.82
COG3787	145	Uncharacterized protein conserved in bacteria [Fun	89.29
PRK03467	144	hypothetical protein; Provisional	87.92
PF13883	170	Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase	85.2
PRK06733	151	hypothetical protein; Provisional	84.38
KOG3374|consensus	210		83.52
PF04299	169	FMN_bind_2: Putative FMN-binding domain; InterPro:	82.5

>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]

Probab=100.00  E-value=2.8e-58  Score=405.49  Aligned_cols=210  Identities=50%  Similarity=0.902  Sum_probs=202.7

Q ss_pred             ChhhhccccccCCcCCCccccc-CChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEec
Q psy2497           8 DLKDKRVPYKSRNEVLLEKDIV-KEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTN   86 (331)
Q Consensus         8 ~~~~~r~~~~~~~~~~~~~~~~-~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~   86 (331)
                      .++++|.+|...  ++.+.+++ .||+.+|..||++|.+ .++++|++|+|||||++|+|++|+|+|+++|+.||+||||
T Consensus         4 ~~a~~r~~y~~~--~l~~~d~~~~~P~~lF~~Wl~eA~~-~~~~ePnAm~lATvd~~G~P~~R~VLLK~~DerGfvFyTN   80 (214)
T COG0259           4 VLANIRREYTKA--GLREADLPTANPLTLFRRWLEEAIR-AEVNEPNAMTLATVDEQGRPSSRIVLLKELDERGFVFYTN   80 (214)
T ss_pred             cchhhHHHhhhc--ccccccCCccCHHHHHHHHHHHHHh-cccCCCceeEEEeecCCCCceeeEEEecccCCCcEEEEec
Confidence            699999999965  68888888 9999999999999997 6799999999999999999999999999999999999999


Q ss_pred             CCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHH
Q psy2497          87 YNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELR  166 (331)
Q Consensus        87 ~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~  166 (331)
                      ..|+|+.+|++||+|++||+|+++.|||||+|.|++++++++++||.+||+++||++|+|+||.+|.++..|+.+.+++.
T Consensus        81 ~~S~Kg~eLa~np~Aal~F~W~~L~RQVrv~G~ve~vs~eesd~Yf~sRPr~S~iGAWAS~QS~~i~~r~~Le~~~ae~~  160 (214)
T COG0259          81 YGSRKGRELAANPYAALLFPWKELERQVRVEGRVERVSDEESDAYFASRPRGSQIGAWASKQSRPIASRAALEAKVAELT  160 (214)
T ss_pred             cCCcchhhHhhCcceeEEecchhccceEEEeeeeeeCCHHHHHHHHhcCCCcCccchhhccCccccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497         167 QKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP  234 (331)
Q Consensus       167 ~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p  234 (331)
                      ++|.+++ ||.|++|+||+|.|.+|||||++.+|+|+|++|.+             +++||...+++|
T Consensus       161 ~kf~~~~-iP~P~~WgG~ri~p~~iEFWqgr~~RLHdR~~y~r-------------~~g~W~~~RL~P  214 (214)
T COG0259         161 AKFADGE-IPRPPHWGGFRIVPESIEFWQGRPSRLHDRLRYRR-------------DDGGWKIERLAP  214 (214)
T ss_pred             HhcCCCC-CCCCCCccceEeeeeEEEEecCCCccceeeEEEee-------------cCCCeEEEecCC
Confidence            9998887 99999999999999999999999999999999998             589999999987

>KOG2586|consensus

Probab=100.00  E-value=9.3e-52  Score=362.37  Aligned_cols=216  Identities=48%  Similarity=0.867  Sum_probs=200.2

Q ss_pred             CCChhhhccccccCCcCCCccccc-CChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEE
Q psy2497           6 TTDLKDKRVPYKSRNEVLLEKDIV-KEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFF   84 (331)
Q Consensus         6 ~~~~~~~r~~~~~~~~~~~~~~~~-~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~   84 (331)
                      .+||+++|..|++.  .|.+..++ .||+++|++|+++|.+..+..+++.|+|+|++.||+|++|+|++++++.+||+||
T Consensus        11 ~id~~p~r~~Y~~s--sL~e~~l~~~DPv~~F~~wf~EA~~~~~~~~~~am~LsT~~~d~rvssRmvLlKgl~~~gf~fy   88 (228)
T KOG2586|consen   11 KIDIAPMRYQYMKS--SLEEIELTPSDPVELFKKWFQEAAKDPDIGEINAMTLSTADKDGRVSSRMVLLKGLDHDGFVFY   88 (228)
T ss_pred             ceeechHHHhhhhh--hhhhhhcCCCChHHHHHHHHHHHhhCCCcCchhheeehhccccCCcceeeeeeecccCCCeEEE
Confidence            47899999999877  57666665 7999999999999998666778999999999999999999999999999999999


Q ss_pred             ecC-CCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHH
Q psy2497          85 TNY-NSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITE  163 (331)
Q Consensus        85 T~~-~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~  163 (331)
                      |+. .|+|+++|.+||+|||+|||+..++||||+|.+++++++++++||+++|+++||++|+|+||+||.+++.+..+..
T Consensus        89 tn~~~srk~kdL~~NP~Aal~Fyw~~l~rQVRveG~ve~l~~ee~e~yf~srp~~SqIga~~s~qs~vI~~re~l~k~~e  168 (228)
T KOG2586|consen   89 TNYGTSRKGKDLQENPNAALLFYWEDLNRQVRVEGIVEKLPREEAEAYFKSRPRASQIGAWASPQSEVIPDREELEKKDE  168 (228)
T ss_pred             eeccccccccccccCCcceEEEeehhccceeEEEeccccCCHHHHHHHHhcCcchhhccceecCCCCccCCHHHHHHHHH
Confidence            999 8999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497         164 ELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP  234 (331)
Q Consensus       164 ~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p  234 (331)
                      ++.+.|.++..||.|++|++|+|.|..+||||++.+++|+|++|.+           ...++.|...+++|
T Consensus       169 ~l~~~~~~~~~IpkP~swgg~rl~P~~~EFwQg~~~rLhDR~~yr~-----------~~~d~~Wk~~rlap  228 (228)
T KOG2586|consen  169 ELTELFGDEQSIPKPDSWGGYRLVPQEFEFWQGQPDRLHDRIVYRR-----------LTVDEDWKLVRLAP  228 (228)
T ss_pred             HHHHHhcccccccCCCcccceEEeeeeehhhcCCchhhhheEEEec-----------ccCCCCeeEEecCC
Confidence            9988887656699999999999999999999999999999999996           13356799988876

>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase

Probab=100.00  E-value=1.7e-50  Score=407.64  Aligned_cols=215  Identities=47%  Similarity=0.872  Sum_probs=201.3

Q ss_pred             CChhhhccccccCCcCCCcccccCChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEec
Q psy2497           7 TDLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTN   86 (331)
Q Consensus         7 ~~~~~~r~~~~~~~~~~~~~~~~~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~   86 (331)
                      +|++++|++|...  .|++++++.||+++|..||++|++ .++.+|++|+|||||.+|.|++|+|++|+++++||+||||
T Consensus       329 ~~~~~~r~~y~~~--~l~~~~~~~dP~~~F~~W~~eA~~-~~~~eP~Am~LATv~~~G~P~~RtVlLk~~d~~g~~F~Tn  405 (544)
T PLN02918        329 VDISALRENYISP--ELLEEQVETDPTDQFRKWFDEAVA-AGLREPNAMALSTANKDGKPSSRMVLLKGVDKNGFVWYTN  405 (544)
T ss_pred             cCHHHHHhhcccc--CCChhhcCCCHHHHHHHHHHHHHh-cCCCCCccceEEeeCCCCCeeeEEEEEeEEcCCceEEEEC
Confidence            5899999999866  589999999999999999999997 7899999999999999999999999999999999999999


Q ss_pred             CCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHH
Q psy2497          87 YNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELR  166 (331)
Q Consensus        87 ~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~  166 (331)
                      .+|+|+.||++||+|+|+|||+...|||||+|+|++++++++++||.+||+++|+++|+|+||++|.+++.|+++.++++
T Consensus       406 ~~S~K~~el~~Np~aal~F~w~~l~rQVRi~G~v~~~~~~es~~yf~sRp~~Sqi~A~aS~QS~~i~~r~~L~~~~~~~~  485 (544)
T PLN02918        406 YESQKGSDLSENPSAALLFYWEELNRQVRVEGSVQKVPESESENYFHSRPRGSQIGAIVSKQSSVVPGRHVLYQEYKELE  485 (544)
T ss_pred             CCChhHHHHHhCCcEEEEeeeccccEEEEEEEEEEECCHHHHHHHHHhCCccccceEEecCCCCcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCc-CCCCceEeeecC
Q psy2497         167 QKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHE-GEDGWYYERLFP  234 (331)
Q Consensus       167 ~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~-~~~gw~f~tl~p  234 (331)
                      ++|++++.+|+|++|+||+|.|++|||||++.+|+|+|++|.+.          .. ++++|...+++|
T Consensus       486 ~~~~~~~~vp~P~~WgGy~v~P~~iEFWQgr~~RLHdR~~Y~r~----------~~~~~~~W~~~rL~P  544 (544)
T PLN02918        486 KKYSDGSVIPKPKNWGGYRLKPNLFEFWQGQQSRLHDRLQYSLQ----------EVNGKPVWKIHRLAP  544 (544)
T ss_pred             HHhcCCCCCCCCCCceeEEEecCEEEECCCCCCCccceEEEEec----------CCCCCCCeEEEEeCC
Confidence            99966533899999999999999999999999999999999981          00 124599999987

>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional

Probab=100.00  E-value=4.5e-49  Score=394.42  Aligned_cols=216  Identities=47%  Similarity=0.873  Sum_probs=200.0

Q ss_pred             CChhhhccccccCCcCCCcccccCChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEec
Q psy2497           7 TDLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTN   86 (331)
Q Consensus         7 ~~~~~~r~~~~~~~~~~~~~~~~~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~   86 (331)
                      +|++++|+.|..+  .|++++++.||+++|+.||++|++ .++.+|++|+|||+|++|.|++|+|+||+++++||+||||
T Consensus       247 ~~~~~~r~~y~~~--~l~~~~~~~~P~~~f~~W~~~a~~-~~~~ep~am~LATvd~~G~P~~R~VlLk~~d~~g~~F~Tn  323 (462)
T PLN03049        247 VDIAALRENYVGP--ELLEEQVNADPIDQFKEWFDDAVA-AGLREPNAMTLATAGEDGRPSARIVLLKGVDKRGFVWYTN  323 (462)
T ss_pred             cCHHHHHhhhccc--cCChhhcCCCHHHHHHHHHHHHHH-cCCCCCCeeEEEEECCCCCeeEEEEEEeEEcCCcEEEEEC
Confidence            5899999999866  589999999999999999999997 7899999999999999999999999999999999999999


Q ss_pred             CCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHH
Q psy2497          87 YNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELR  166 (331)
Q Consensus        87 ~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~  166 (331)
                      .+|+|++||++||+|+|+|||+...|||||+|+|++++++++++||.++|+++|+++|+|+||+++.+++.++....++.
T Consensus       324 ~~S~K~~eL~~Np~aal~F~w~~~~rQvRv~G~a~~~~~~~s~~yf~~rp~~sq~~a~as~qs~~i~~~~~l~~~~~~~~  403 (462)
T PLN03049        324 YDSRKAHELSANPKASLVFYWDGLHRQVRVEGSVEKVSEEESDQYFHSRPRGSQIGALVSKQSTVIPGRHILDQSYKELE  403 (462)
T ss_pred             CCCHHHHHHhhCCcEEEEeecCCCCEEEEEEEEEEECCHHHHHHHHHhCChhhhhhheeCCCCCcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988898


Q ss_pred             HhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497         167 QKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP  234 (331)
Q Consensus       167 ~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p  234 (331)
                      .+|.++..+|+|++|++|+|+|++|||||++.+++|+|++|.+. .        ..++++|...+++|
T Consensus       404 ~~~~~~~~~p~p~~w~g~~v~p~~iEfwq~~~~rlHdR~~y~~~-~--------~~~~~~W~~~rl~P  462 (462)
T PLN03049        404 AKYADSSAIPKPKHWGGYRLKPELIEFWQGRESRLHDRLQYTRE-E--------INGKSVWKIDRLAP  462 (462)
T ss_pred             HhhccCCCCCCCCceEEEEEEeeEEEEccCCCCCCeeEEEEEec-C--------CCCCCCEEEEEeCC
Confidence            88855334899999999999999999999999999999999971 0        01234699999987

>TIGR00558 pdxH pyridoxamine-phosphate oxidase

Probab=100.00  E-value=2.9e-47  Score=347.67  Aligned_cols=212  Identities=46%  Similarity=0.853  Sum_probs=197.4

Q ss_pred             CCChhhhccccccCCcCCCcccccCChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEe
Q psy2497           6 TTDLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFT   85 (331)
Q Consensus         6 ~~~~~~~r~~~~~~~~~~~~~~~~~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T   85 (331)
                      .+++..+|++|.++  .|.+.++|.||+.+|..||++|++ .++.++++++|||+|.+|.|++|+|+++.+++++|+|||
T Consensus         6 ~~~~~~~~~~~~~~--~l~~~~~~~~P~~~f~~W~~~a~~-~~~~~~~~~~LaTvd~~G~P~~R~v~lr~~~~~~l~F~T   82 (217)
T TIGR00558         6 PIIIANIRYEYTKG--GLNEKDLPDDPIDLFEIWFNEAIE-ARLTEPNAMTLSTVDESGRPSSRMVLLKELDERGFVFYT   82 (217)
T ss_pred             CcChHHHhhhcccc--cCChhhcCCCHHHHHHHHHHHHHh-cCCCCCceEEEEEECCCCCEEEEEEEEEEECCCcEEEEE
Confidence            46788899999876  588889999999999999999997 788999999999999999999999999999988999999


Q ss_pred             cCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHH
Q psy2497          86 NYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEEL  165 (331)
Q Consensus        86 ~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~  165 (331)
                      +.+|+|+.||++||+|+|||||+...+||||+|+|++++++++++||.++|..+|+.+|+++||+++.+++.|......+
T Consensus        83 ~~~S~K~~eL~~np~v~l~f~~~~~~~qvrv~G~a~~~~~~~~~~~w~~~~~~sr~~~~~~~q~~~~~~~~~l~~~~~~~  162 (217)
T TIGR00558        83 NYGSRKGHQIETNPNAALVFFWPDLERQVRVEGKVEKLPREESDAYFKSRPRGSRIGAWASRQSDVISNREELESKALKN  162 (217)
T ss_pred             CCCChHHHHHHhCCcEEEEEEeCCCCEEEEEEEEEEECCHHHHHHHHHhCChhhcceEEcCCCCcccCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998887777


Q ss_pred             HHhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497         166 RQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP  234 (331)
Q Consensus       166 ~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p  234 (331)
                      .+++++++ +|+|++||||+|.|++||||+++.+++|+|++|.+             +++||....++|
T Consensus       163 ~~~~~~~~-~p~p~~f~~~~l~p~~vEf~~l~~~r~H~R~~y~~-------------~~~~W~~~~l~P  217 (217)
T TIGR00558       163 TEKFEDAE-IPRPDYWGGYRVVPEEIEFWQGRPSRLHDRFVYRR-------------ENDPWKRVRLAP  217 (217)
T ss_pred             HhhccCCC-CCCCCceEEEEEECCEEEEccCCCCCCceEEEEEe-------------cCCCEEEEEeCC
Confidence            77776554 88999999999999999999999889999999997             467899888776

This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.

>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional

Probab=100.00  E-value=2.4e-44  Score=323.81  Aligned_cols=193  Identities=53%  Similarity=0.984  Sum_probs=180.6

Q ss_pred             cccCChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEE
Q psy2497          27 DIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFY  106 (331)
Q Consensus        27 ~~~~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~  106 (331)
                      ++|.||+++|+.||++|++ .+..++++++|||||.||.|++|+|+++++++++|+|||+.+|+|++||++||+|+||||
T Consensus         3 ~~~~~P~~~~~~wl~~a~~-~~~~~~~~~~lATv~~dG~P~~R~V~lr~~~~~~l~f~T~~~S~K~~~l~~np~val~~~   81 (195)
T PRK05679          3 DLPAEPLALFERWLAEAVK-AELNDPNAMTLATVDEDGRPSQRIVLLKGFDERGFVFYTNYESRKGRQLAANPKAALLFP   81 (195)
T ss_pred             cccCCHHHHHHHHHHHHHh-cCCCCCceEEEEeeCCCCCEEEEEEEEEEECCCeEEEEeCCCCHHHHHHhhCCcEEEEEe
Confidence            4889999999999999997 678899999999999999999999999999988999999999999999999999999999


Q ss_pred             eCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEE
Q psy2497         107 WEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVV  186 (331)
Q Consensus       107 ~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v  186 (331)
                      |+...+||||+|+|+++++++++++|.++|.++++.+|+++||++|.+++.++.....+...|.+.. +++|++||||+|
T Consensus        82 ~~~~~~qvrv~G~a~~~~~~~~~~~w~~~p~~~r~~~~~~~qg~~i~~~~~~~~~~~~~~~~~~~~~-~~~p~~f~~~~l  160 (195)
T PRK05679         82 WKSLERQVRVEGRVEKVSAEESDAYFASRPRGSQIGAWASKQSRPISSRAALEAKFAEVKAKFAQGE-VPRPPHWGGYRV  160 (195)
T ss_pred             cCCCCEEEEEEEEEEEeCHHHHHHHHHhCCHhhhceeeeCCCCCccCCHHHHHHHHHHHHhhccCCC-CCCCCccEEEEE
Confidence            9999999999999999999999999999999999999999999999999999887777777775444 789999999999


Q ss_pred             eceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497         187 IPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP  234 (331)
Q Consensus       187 ~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p  234 (331)
                      .|++||||+++.+++|+|++|.+             +++||.-.+++|
T Consensus       161 ~p~~veflql~~~r~H~R~~y~~-------------~~~~W~~~~l~P  195 (195)
T PRK05679        161 VPESIEFWQGRPSRLHDRILYRR-------------DDGGWKIERLAP  195 (195)
T ss_pred             ECCEEEEcCCCCCCCcceEEEEE-------------CCCCEEEEEeCC
Confidence            99999999998888999999997             467899888876

>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]

Probab=100.00  E-value=1.6e-41  Score=299.29  Aligned_cols=117  Identities=44%  Similarity=0.709  Sum_probs=112.2

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCHH
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDK  277 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~~  277 (331)
                      .|+|+.|+++.|           +.|+.||+||||+.|+|| +    +|++||+|||+|||++|+|||||+|+|++|+++
T Consensus        57 ~G~P~~R~VLLK-----------~~DerGfvFyTN~~S~Kg-~----eLa~np~Aal~F~W~~L~RQVrv~G~ve~vs~e  120 (214)
T COG0259          57 QGRPSSRIVLLK-----------ELDERGFVFYTNYGSRKG-R----ELAANPYAALLFPWKELERQVRVEGRVERVSDE  120 (214)
T ss_pred             CCCceeeEEEec-----------ccCCCcEEEEeccCCcch-h----hHhhCcceeEEecchhccceEEEeeeeeeCCHH
Confidence            578999999999           689999999999999996 4    699999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497         278 ESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH  331 (331)
Q Consensus       278 es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~  331 (331)
                      |||+||++||++||||||||+||.+|+||.+|++++++++++|+.++ ||+|+|
T Consensus       121 esd~Yf~sRPr~S~iGAWAS~QS~~i~~r~~Le~~~ae~~~kf~~~~-iP~P~~  173 (214)
T COG0259         121 ESDAYFASRPRGSQIGAWASKQSRPIASRAALEAKVAELTAKFADGE-IPRPPH  173 (214)
T ss_pred             HHHHHHhcCCCcCccchhhccCccccCCHHHHHHHHHHHHHhcCCCC-CCCCCC
Confidence            99999999999999999999999999999999999999999999775 999986

>KOG2586|consensus

Probab=100.00  E-value=5.9e-36  Score=262.83  Aligned_cols=118  Identities=40%  Similarity=0.665  Sum_probs=112.1

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCCCCceEeeec-CCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCH
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLF-PQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSD  276 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~-pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~  276 (331)
                      .+++..|+++.|           +.+.+||+||||+ .|+||     ++|++||+|||+|||+.|.|||||+|.|++|++
T Consensus        67 d~rvssRmvLlK-----------gl~~~gf~fytn~~~srk~-----kdL~~NP~Aal~Fyw~~l~rQVRveG~ve~l~~  130 (228)
T KOG2586|consen   67 DGRVSSRMVLLK-----------GLDHDGFVFYTNYGTSRKG-----KDLQENPNAALLFYWEDLNRQVRVEGIVEKLPR  130 (228)
T ss_pred             cCCcceeeeeee-----------cccCCCeEEEeeccccccc-----cccccCCcceEEEeehhccceeEEEeccccCCH
Confidence            577889999999           5889999999999 99996     479999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497         277 KESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH  331 (331)
Q Consensus       277 ~es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~  331 (331)
                      +|+++||++||++||||||+|+||.||++|++|+++.+++.+.|.+++.||+|++
T Consensus       131 ee~e~yf~srp~~SqIga~~s~qs~vI~~re~l~k~~e~l~~~~~~~~~IpkP~s  185 (228)
T KOG2586|consen  131 EEAEAYFKSRPRASQIGAWASPQSEVIPDREELEKKDEELTELFGDEQSIPKPDS  185 (228)
T ss_pred             HHHHHHHhcCcchhhccceecCCCCccCCHHHHHHHHHHHHHHhcccccccCCCc
Confidence            9999999999999999999999999999999999999999999987678999974

>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase

Probab=100.00  E-value=3.2e-32  Score=275.15  Aligned_cols=132  Identities=35%  Similarity=0.622  Sum_probs=118.1

Q ss_pred             CCCCCceEEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEE
Q psy2497         175 VPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASL  254 (331)
Q Consensus       175 ~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal  254 (331)
                      ++.|...++=.+         ...|+++.|+++.|           +++++||+|+|++.|+|+ +    +|++||+|||
T Consensus       368 ~~eP~Am~LATv---------~~~G~P~~RtVlLk-----------~~d~~g~~F~Tn~~S~K~-~----el~~Np~aal  422 (544)
T PLN02918        368 LREPNAMALSTA---------NKDGKPSSRMVLLK-----------GVDKNGFVWYTNYESQKG-S----DLSENPSAAL  422 (544)
T ss_pred             CCCCccceEEee---------CCCCCeeeEEEEEe-----------EEcCCceEEEECCCChhH-H----HHHhCCcEEE
Confidence            566665444333         34578999999999           577899999999999996 3    7999999999


Q ss_pred             EeecCCCCceEEEEEEeeEcCHHHHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497         255 AFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH  331 (331)
Q Consensus       255 ~f~W~~l~RQVri~G~v~~~~~~es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~  331 (331)
                      +|||+++.|||||+|.|++++++||++||++||++|||+||||+||++|+||++|++++++++++|+++++||+|+|
T Consensus       423 ~F~w~~l~rQVRi~G~v~~~~~~es~~yf~sRp~~Sqi~A~aS~QS~~i~~r~~L~~~~~~~~~~~~~~~~vp~P~~  499 (544)
T PLN02918        423 LFYWEELNRQVRVEGSVQKVPESESENYFHSRPRGSQIGAIVSKQSSVVPGRHVLYQEYKELEKKYSDGSVIPKPKN  499 (544)
T ss_pred             EeeeccccEEEEEEEEEEECCHHHHHHHHHhCCccccceEEecCCCCcCCCHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999976434999986

>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional

Probab=99.96  E-value=1.3e-29  Score=254.33  Aligned_cols=119  Identities=40%  Similarity=0.683  Sum_probs=111.7

Q ss_pred             CCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCH
Q psy2497         197 QSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSD  276 (331)
Q Consensus       197 ~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~  276 (331)
                      ..|+|+.|+++.|           +++++||+|+|++.|+|+ +    +|++||+|||+|||+++.|||||+|.|+++++
T Consensus       299 ~~G~P~~R~VlLk-----------~~d~~g~~F~Tn~~S~K~-~----eL~~Np~aal~F~w~~~~rQvRv~G~a~~~~~  362 (462)
T PLN03049        299 EDGRPSARIVLLK-----------GVDKRGFVWYTNYDSRKA-H----ELSANPKASLVFYWDGLHRQVRVEGSVEKVSE  362 (462)
T ss_pred             CCCCeeEEEEEEe-----------EEcCCcEEEEECCCCHHH-H----HHhhCCcEEEEeecCCCCEEEEEEEEEEECCH
Confidence            3578999999999           577889999999999996 3    79999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497         277 KESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH  331 (331)
Q Consensus       277 ~es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~  331 (331)
                      ++|++||++||++|||+||||+||++|++|+.|++++++++++|.+++++|+|+|
T Consensus       363 ~~s~~yf~~rp~~sq~~a~as~qs~~i~~~~~l~~~~~~~~~~~~~~~~~p~p~~  417 (462)
T PLN03049        363 EESDQYFHSRPRGSQIGALVSKQSTVIPGRHILDQSYKELEAKYADSSAIPKPKH  417 (462)
T ss_pred             HHHHHHHHhCChhhhhhheeCCCCCcCCCHHHHHHHHHHHHHhhccCCCCCCCCc
Confidence            9999999999999999999999999999999999999999999965457999985

>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional

Probab=99.89  E-value=4.2e-23  Score=185.85  Aligned_cols=118  Identities=43%  Similarity=0.676  Sum_probs=108.7

Q ss_pred             CCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCH
Q psy2497         197 QSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSD  276 (331)
Q Consensus       197 ~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~  276 (331)
                      ..|.|+.|.+..+           +.+++|+.|+|+..|+|+     ++|++||+|||+|||+.+.|||||+|.|+.+++
T Consensus        37 ~dG~P~~R~V~lr-----------~~~~~~l~f~T~~~S~K~-----~~l~~np~val~~~~~~~~~qvrv~G~a~~~~~  100 (195)
T PRK05679         37 EDGRPSQRIVLLK-----------GFDERGFVFYTNYESRKG-----RQLAANPKAALLFPWKSLERQVRVEGRVEKVSA  100 (195)
T ss_pred             CCCCEEEEEEEEE-----------EECCCeEEEEeCCCCHHH-----HHHhhCCcEEEEEecCCCCEEEEEEEEEEEeCH
Confidence            3578999999987           356788999999999996     379999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497         277 KESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH  331 (331)
Q Consensus       277 ~es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~  331 (331)
                      +++++||.+||+++|+++|+|+||++|.++++|+++++++..+|.. .++|+|++
T Consensus       101 ~~~~~~w~~~p~~~r~~~~~~~qg~~i~~~~~~~~~~~~~~~~~~~-~~~~~p~~  154 (195)
T PRK05679        101 EESDAYFASRPRGSQIGAWASKQSRPISSRAALEAKFAEVKAKFAQ-GEVPRPPH  154 (195)
T ss_pred             HHHHHHHHhCCHhhhceeeeCCCCCccCCHHHHHHHHHHHHhhccC-CCCCCCCc
Confidence            9999999999999999999999999999999999999999999964 35888874

>TIGR00558 pdxH pyridoxamine-phosphate oxidase

Probab=99.89  E-value=8e-23  Score=186.85  Aligned_cols=117  Identities=38%  Similarity=0.639  Sum_probs=107.6

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCHH
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDK  277 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~~  277 (331)
                      .|.++.|++..+           ..+++|+.|+|+..|+|+     .+|++||+|+|+|||+.+.+||||+|.|+.++++
T Consensus        60 ~G~P~~R~v~lr-----------~~~~~~l~F~T~~~S~K~-----~eL~~np~v~l~f~~~~~~~qvrv~G~a~~~~~~  123 (217)
T TIGR00558        60 SGRPSSRMVLLK-----------ELDERGFVFYTNYGSRKG-----HQIETNPNAALVFFWPDLERQVRVEGKVEKLPRE  123 (217)
T ss_pred             CCCEEEEEEEEE-----------EECCCcEEEEECCCChHH-----HHHHhCCcEEEEEEeCCCCEEEEEEEEEEECCHH
Confidence            577999988887           356678999999999996     3799999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497         278 ESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH  331 (331)
Q Consensus       278 es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~  331 (331)
                      ++++||++||+.||+.+|+|+||++|.++++|++++.++.+++.++ ++|+|++
T Consensus       124 ~~~~~w~~~~~~sr~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~-~~p~p~~  176 (217)
T TIGR00558       124 ESDAYFKSRPRGSRIGAWASRQSDVISNREELESKALKNTEKFEDA-EIPRPDY  176 (217)
T ss_pred             HHHHHHHhCChhhcceEEcCCCCcccCCHHHHHHHHHHHHhhccCC-CCCCCCc
Confidence            9999999999999999999999999999999999999999998644 5898875

This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.

>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E

Probab=99.79  E-value=3.4e-19  Score=143.98  Aligned_cols=90  Identities=23%  Similarity=0.360  Sum_probs=76.2

Q ss_pred             HHHHHHHHhhcCCCCCCCceEEEEeec-CCCCeeEEEEEEEEeeCC------eEEEEecCCCcchhhhh-cCCcEEEEEE
Q psy2497          35 LFESWFHEANNTPGIIEANAMFIATST-KNGIPSGRMVLLKSYGKN------GFVFFTNYNSRKGNELA-ENPQASLAFY  106 (331)
Q Consensus        35 ~f~~Wl~~A~~~~~~~e~~~~~LATvd-~dG~P~~R~V~~r~~~~~------gl~F~T~~~S~K~~eL~-~np~val~f~  106 (331)
                      .|+.-|+++++.......++++|||+| ++|.|++||||+|++..+      -|.|+||.+|+|+.||. .||+|++|||
T Consensus         3 ~Wr~~L~~~~~~~~~~~~~~~~LATv~~~~~~P~~RTvVlRgf~~~~~~~~~~L~f~TD~RS~Kv~~l~~~~p~~e~~~~   82 (100)
T PF12766_consen    3 PWRQLLERALKKNRSHPFRYFQLATVDPPDGSPRVRTVVLRGFDPDLKPESDLLTFHTDARSPKVAQLASANPRVELVFW   82 (100)
T ss_dssp             TCHHHHHHHHHHTTTCGGGCEEEEEEE-TTTEEEEEEEEEEEEETT----TTEEEEEEETTSHHHHHHH-H--EEEEEEE
T ss_pred             ccHHHHHHHHhhcCCCCCceeEEEEecCCCCCCceeEEEEcCcccccccccCeEEEEecCCchhHHHHhccCCCEEEEEE
Confidence            355557777752134467889999999 799999999999999986      49999999999999999 9999999999


Q ss_pred             eCCCCeEEEEEEEEEecC
Q psy2497         107 WEPLKRSVRIEGHVEKTS  124 (331)
Q Consensus       107 ~~~~~~qvri~G~a~~~~  124 (331)
                      ++....|+||+|+|.++.
T Consensus        83 ~~~~~~Q~Ri~G~a~ii~  100 (100)
T PF12766_consen   83 FPETREQFRIRGRASIIG  100 (100)
T ss_dssp             ECCCTEEEEEEEEEEEE-
T ss_pred             eCCccEEEEEEEEEEEEC
Confidence            999999999999999863

coli and mammalian cells. This entry represents the FMN-binding domain of pyridoxamine 5'-phosphate oxidases that belong to the Alr4036 family.; GO: 0010181 FMN binding; PDB: 2I51_B 2OU5_B.

>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]

Probab=99.79  E-value=2.7e-19  Score=151.22  Aligned_cols=117  Identities=23%  Similarity=0.412  Sum_probs=100.3

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeC-CeEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcchh
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGK-NGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESD  129 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~-~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~~  129 (331)
                      ...+++|+|+..+|.||+|+|.+..-.. ..|||+|+..|+|+.+|+.||+|+|+|......-.|.|+|+|+++.     
T Consensus        16 ~~kv~~l~tv~~~g~phsRpM~f~hdg~~~tiwf~T~kds~~v~eik~n~~v~v~~~~~~~~~fv~v~Gtael~~-----   90 (145)
T COG3871          16 GSKVGMLATVQENGHPHSRPMTFNHDGPKGTIWFFTNKDSRKVEEIKKNPKVCVLFGYDDHDAFVEVSGTAELVE-----   90 (145)
T ss_pred             hCceEEEEEecCCCCccccceeccCCCCcccEEeeccCchHHHHHHhhCCcEEEEEecCCCcceEEEEEEEEeec-----
Confidence            5678999999999999999999765443 3599999999999999999999999999988888999999999854     


Q ss_pred             HHHhcCCccccceeecCCCCCCCCCHHHHHHHHH-HHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCC
Q psy2497         130 DYFQSRPYASKIGAIASDQSRPCESRDQMSKITE-ELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSD  199 (331)
Q Consensus       130 ~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~-~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~  199 (331)
                                              |++.+++.|. .++.||+.|.   ..|++|+|+|.|+.++||+.++.
T Consensus        91 ------------------------dra~~d~~W~~~~~~wFe~Gk---edP~l~~Lkv~~e~i~yw~~~~~  134 (145)
T COG3871          91 ------------------------DRAKIDELWTSVLEAWFEQGK---EDPDLTMLKVTAEDIDYWNSGDN  134 (145)
T ss_pred             ------------------------cHHHHHHhhhhhHHHHHhcCC---CCCCeEEEEEchhHhHHHhccCC
Confidence                                    6667777776 4688998775   34679999999999999987543

>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1

Probab=99.62  E-value=4.7e-15  Score=115.27  Aligned_cols=77  Identities=32%  Similarity=0.416  Sum_probs=71.5

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCC-eEEEEecCCCcchhhhhcCCcEEEEEEeCC-CCeEEEEEEEEEecCCcc
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKN-GFVFFTNYNSRKGNELAENPQASLAFYWEP-LKRSVRIEGHVEKTSDKE  127 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~-gl~F~T~~~S~K~~eL~~np~val~f~~~~-~~~qvri~G~a~~~~~~~  127 (331)
                      +.++++|||++.||.|++|+|.+...+++ .|||+|+..|.|+++|++||+|+|+|+++. ..++|+|.|+|++++++|
T Consensus        11 ~~~~~~laTv~~dG~P~~~~v~~~~~~~~~~i~~~t~~~~~k~~nl~~np~v~l~~~~~~~~~~~v~~~G~a~~~~d~E   89 (89)
T PF01243_consen   11 ESKYCVLATVDEDGRPHASPVWFVYDDDDNTIYFATNPGSRKVRNLRRNPRVSLLFCDPEGTRRGVRVSGTAEILTDEE   89 (89)
T ss_dssp             STSEEEEEEEETTSEEEEEEEEEEEECTTTEEEEEEETTSHHHHHHHHSTEEEEEEEETTTTTEEEEEEEEEEEESHHH
T ss_pred             CCCEEEEEEECCCCCEEEEEEeeecCCceeEEEEeecCCCCchhhCccCCeEEEEEEEcCcCceEEEEEEEEEEEcCCC
Confidence            56889999999999999999999876665 699999999999999999999999999999 899999999999998754

4.3.5 from EC) is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This reaction serves as the terminal step in the de novo biosynthesis of PLP in Escherichia coli and as a part of the salvage pathway of this coenzyme in both E. coli and mammalian cells [, ]. The binding sites for FMN and for substrate have been highly conserved throughout evolution. This entry represents the FMN-binding domain present in pyridoxamine 5'-phosphate oxidases, as well as in a number of proteins that have not been demonstrated to have enzymatic activity. The FMN-binding domain has a structure consisting of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. PNPOx has a different dimerisation mode than that found in flavin reductases, which also carry an FMN-binding domain with a similar topology. ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0010181 FMN binding, 0055114 oxidation-reduction process; PDB: 2IG6_A 1CI0_A 2HQ7_B 2HTD_B 3EC6_A 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A ....

>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme

Probab=99.62  E-value=9.3e-15  Score=119.86  Aligned_cols=72  Identities=25%  Similarity=0.284  Sum_probs=64.2

Q ss_pred             EEEeecCCCCeeEEEEEEEEeeCC-eEEEEecCCCcchhhhhcCCcEEEEEEeCCCC-eEEEEEEEEEecCCcc
Q psy2497          56 FIATSTKNGIPSGRMVLLKSYGKN-GFVFFTNYNSRKGNELAENPQASLAFYWEPLK-RSVRIEGHVEKTSDKE  127 (331)
Q Consensus        56 ~LATvd~dG~P~~R~V~~r~~~~~-gl~F~T~~~S~K~~eL~~np~val~f~~~~~~-~qvri~G~a~~~~~~~  127 (331)
                      +|||++++|.|++++|.+....++ .|||+|+..|+|+++|++||+|+|+|+++... ++++|+|+|+++.+.+
T Consensus         1 ~LaTv~~~G~P~~~pv~~~~~~~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~~~~~~v~i~G~a~~v~d~~   74 (117)
T TIGR03618         1 VLATIRADGRPQLSPVWFGVDPDGDILVVSTTAGRAKARNLRRDPRVSLSVLDPDFPYRYVEVEGTAELVEDPD   74 (117)
T ss_pred             CEEEECCCCCEEEEEEEEEEcCCCCEEEEEecCCcHhhHhhhhCCeEEEEEECCCCCccEEEEEEEEEEecCCc
Confidence            599999999999999998654444 59999999999999999999999999998866 8999999999987643

A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.

>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family

Probab=99.59  E-value=8.2e-15  Score=123.73  Aligned_cols=77  Identities=19%  Similarity=0.326  Sum_probs=68.2

Q ss_pred             CCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC-CeEEEEEEEEEecCCc
Q psy2497          49 IIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL-KRSVRIEGHVEKTSDK  126 (331)
Q Consensus        49 ~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~-~~qvri~G~a~~~~~~  126 (331)
                      +.+.++++|||+++||.|++|||++. .+++.|||+|+.+|.|+++|++||+|+|+|+++.. ..+|+|+|+|+++.+.
T Consensus        11 L~~~~~~~LaT~~~dG~P~~~P~~~~-~~d~~l~~~t~~~s~K~~~l~~np~Vsl~~~~~~~~~~~v~v~G~a~i~~d~   88 (130)
T TIGR03667        11 LREESIVWLTTVRRSGQPQPVPVWFL-WDGTEFLIYSRPQAAKLRNIRRNPRVSLHLNSDGRGGDVVVFTGTAEVVADA   88 (130)
T ss_pred             hcCCCeEEEEEECCCCceEEEEEEEE-EECCEEEEEeCCcCHHHHHHhhCCcEEEEEEcCCCCceEEEEEEEEEEeCCc
Confidence            34678899999999999999999994 46667999999999999999999999999988654 4899999999998765

A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.

>COG5135 Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=1.6e-13  Score=120.96  Aligned_cols=80  Identities=21%  Similarity=0.213  Sum_probs=70.0

Q ss_pred             CCCceEEEEeecCC-CCeeEEEEEEEEee-CC----eEEEEecCCCcchhhhhcCC-----------cEEEEEEeCCCCe
Q psy2497          50 IEANAMFIATSTKN-GIPSGRMVLLKSYG-KN----GFVFFTNYNSRKGNELAENP-----------QASLAFYWEPLKR  112 (331)
Q Consensus        50 ~e~~~~~LATvd~d-G~P~~R~V~~r~~~-~~----gl~F~T~~~S~K~~eL~~np-----------~val~f~~~~~~~  112 (331)
                      .-+.+++||||+.. |.|+.|||++|++- .|    -|.|.||.+|.|+.||...|           ....|||+|.+.+
T Consensus        21 ~~~~yfQlATv~~~~~~PrnRTVvfRgFl~~D~~tn~L~F~TD~rS~Ki~ei~~qp~~~~~s~~~~~~fEaC~yfP~T~e  100 (245)
T COG5135          21 EPFVYFQLATVDELTNKPRNRTVVFRGFLFHDKRTNVLTFNTDMRSSKITEIFIQPNSNNSSDSKTPFFEACFYFPETWE  100 (245)
T ss_pred             ccceeEEEEeecccCCCCccceEEEeeeeecccccceEEEecchhhhhhhHHhhccccCCCCCCCccHHHHHhcccchhh
Confidence            45677999999975 99999999999986 33    38999999999999999888           7889999999999


Q ss_pred             EEEEEEEEEecCCcchh
Q psy2497         113 SVRIEGHVEKTSDKESD  129 (331)
Q Consensus       113 qvri~G~a~~~~~~~~~  129 (331)
                      |+||+|.+..++.+.+.
T Consensus       101 Q~RisGQ~~l~s~~~~~  117 (245)
T COG5135         101 QYRISGQCFLISKQFKY  117 (245)
T ss_pred             heEeeeeEEEEchhhcC
Confidence            99999999888765443

>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family

Probab=99.34  E-value=1.1e-11  Score=105.10  Aligned_cols=83  Identities=18%  Similarity=0.167  Sum_probs=70.4

Q ss_pred             CCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCCC-eEEEEEEEEEecCCcc
Q psy2497          49 IIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLK-RSVRIEGHVEKTSDKE  127 (331)
Q Consensus        49 ~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~-~qvri~G~a~~~~~~~  127 (331)
                      +.+.++++|+|++.||.|+++||.+. .+++.|||+|...++|+++|++||+|++++...... ..|.|+|+|+++.+++
T Consensus         9 L~~~~~~~LaT~~~dG~P~~~Pv~~~-~d~g~l~f~t~~~~~K~~nl~~np~Vsl~v~~~~~~~~~v~v~G~A~~v~~~e   87 (132)
T TIGR03666         9 LARARYALLTTFRKDGTPVPTPVWAA-VDGDKLLVRTKEDSWKVKRIRNNPRVTLAPCDRRGRPTGPVVPGRARILDGAE   87 (132)
T ss_pred             hccCcEEEEEEECCCCcEEEEEEEEE-EECCEEEEEECCcCHHHHHHHhCCCEEEEEECCCCCEeEEEEEEEEEEEcchh
Confidence            45788999999999999999999994 566679999999999999999999999999776543 5699999999986555


Q ss_pred             hhHHH
Q psy2497         128 SDDYF  132 (331)
Q Consensus       128 ~~~~~  132 (331)
                      ....|
T Consensus        88 ~~~~~   92 (132)
T TIGR03666        88 TARAR   92 (132)
T ss_pred             HHHHH
Confidence            54443

A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.

>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family

Probab=99.21  E-value=2.5e-10  Score=97.93  Aligned_cols=79  Identities=23%  Similarity=0.164  Sum_probs=62.4

Q ss_pred             CCCCceEEEEeecCCCCeeEEEEEEEEe------eCCeEEEEe------cCCCcchhhhhcCCcEEEEEEeCCC----Ce
Q psy2497          49 IIEANAMFIATSTKNGIPSGRMVLLKSY------GKNGFVFFT------NYNSRKGNELAENPQASLAFYWEPL----KR  112 (331)
Q Consensus        49 ~~e~~~~~LATvd~dG~P~~R~V~~r~~------~~~gl~F~T------~~~S~K~~eL~~np~val~f~~~~~----~~  112 (331)
                      +.+.+++.|||+++||.|++-||++...      +++.|||++      ...++|.++|++||+|++++.....    .+
T Consensus         9 L~~~~~~~LaTv~~dG~P~vvPv~f~~d~~~~~~~~~~i~~~~~~~~~t~~~~~K~~ni~~nPrVs~~v~~~~~~~~~~~   88 (141)
T TIGR03668         9 FAQARVARLATVSPDGEPHLVPVVFAVGAGAVAAGDAVIYTAVDAKPKTTPRLRRLRNIEENPRVSLLVDRYDDDWTRLW   88 (141)
T ss_pred             HccCCEEEEEEECCCCCeEEEeEEEEEccccccCCCCEEEEEecCCCCcccccHHHHHHhhCCCEEEEEecCCCCccceE
Confidence            3467889999999999999999998643      145689884      4567999999999999998753221    24


Q ss_pred             EEEEEEEEEecCCcc
Q psy2497         113 SVRIEGHVEKTSDKE  127 (331)
Q Consensus       113 qvri~G~a~~~~~~~  127 (331)
                      .|.++|+|+++.+++
T Consensus        89 ~v~v~G~a~~~~d~~  103 (141)
T TIGR03668        89 WVRADGRAEILRPGE  103 (141)
T ss_pred             EEEEEEEEEEecCCc
Confidence            599999999987653

A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.

>KOG4558|consensus

Probab=99.15  E-value=4.9e-10  Score=99.45  Aligned_cols=86  Identities=19%  Similarity=0.257  Sum_probs=66.3

Q ss_pred             HHHhhcCCCCCCCceEEEEeec-CCCCeeEEEEEEEEeeCC-----eEEEEecCCCcchhhhhcC--------------C
Q psy2497          40 FHEANNTPGIIEANAMFIATST-KNGIPSGRMVLLKSYGKN-----GFVFFTNYNSRKGNELAEN--------------P   99 (331)
Q Consensus        40 l~~A~~~~~~~e~~~~~LATvd-~dG~P~~R~V~~r~~~~~-----gl~F~T~~~S~K~~eL~~n--------------p   99 (331)
                      |++-+...++--+.+++|||++ -.+.|+.|||++|++.-.     .+.|.|+.+|.|+.+.-..              |
T Consensus        13 ~~~~~~ns~~~hs~yfQlAT~~~l~~~PrnRTVvfRgF~~h~~R~~~v~~ntdlrssk~~~sf~~~~~a~~~~~~~~~~P   92 (251)
T KOG4558|consen   13 LKENVDNSGVIHSEYFQLATLPTLEIYPRNRTVVFRGFVWHKPRPDDVLANTDLRSSKDIASFKAAEIAEQQKNTFPSGP   92 (251)
T ss_pred             HHhhhccCCccccceEEEeecccccCCcccceEEEecceecCCCCcceeeeccchhhhhhhhhhchhhhccccccccCCC
Confidence            4443332333345669999999 689999999999998632     3899999999998764332              2


Q ss_pred             c-EEEEEEeCCCCeEEEEEEEEEecCC
Q psy2497         100 Q-ASLAFYWEPLKRSVRIEGHVEKTSD  125 (331)
Q Consensus       100 ~-val~f~~~~~~~qvri~G~a~~~~~  125 (331)
                      - ..+|||+|.+.+|+||+|.+..++.
T Consensus        93 ~~femC~yfp~TweQ~RisGqi~~it~  119 (251)
T KOG4558|consen   93 IPFEMCGYFPKTWEQIRISGQIWLITP  119 (251)
T ss_pred             cccceeeeechhhhheEecceEEEEcc
Confidence            2 6799999999999999999998853

>PF10590 PNPOx_C: Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; InterPro: IPR019576 Pyridoxamine 5'-phosphate oxidase (1

Probab=99.02  E-value=5.8e-10  Score=75.99  Aligned_cols=42  Identities=57%  Similarity=1.286  Sum_probs=37.8

Q ss_pred             eEEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497         181 WGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP  234 (331)
Q Consensus       181 ~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p  234 (331)
                      |+||+|.|++|||||+..+++|+|++|.+            ..+++|...+++|
T Consensus         1 WgGy~l~P~~iEFWqg~~~RlHdR~~y~r------------~~~~~W~~~rL~P   42 (42)
T PF10590_consen    1 WGGYRLVPEEIEFWQGRPDRLHDRIRYTR------------DEDGGWTKERLQP   42 (42)
T ss_dssp             EEEEEEEECEEEEEEEETTSEEEEEEEEE------------ETTTCEEEEEE-T
T ss_pred             CCeEEEEcCEEEEeCCCCCCCEEEEEEEe------------cCCCCEEEEEEcC
Confidence            89999999999999999999999999998            3367899999987

4.3.5 from EC) is an enzyme that is involved in the de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate. It oxidizes pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P. The enzyme requires the presence of flavin mononucleotide (FMN) as a cofactor, although there is some evidence that coenzyme F420 may perform this role in some species []. The sequences of the enzyme from bacterial (genes pdxH or fprA) [] and fungal (gene PDX3) [] sources show that this protein has been highly conserved throughout evolution. PdxH is evolutionary related [] to one of the enzymes in the phenazine biosynthesis protein pathway, phzD (also known as phzG). This entry represents one of the two dimerisation regions of the protein, located at the edge of the dimer interface, at the C terminus, being the last three beta strands, S6, S7, and S8 along with the last three residues to the end. In P21159 from SWISSPROT, S6 runs from residues 178-192, S7 from 200-206 and S8 from 211-215. the extended loop, of residues 167-177 may well be involved in the pocket formed between the two dimers that positions the FMN molecule []. ; GO: 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0055114 oxidation-reduction process; PDB: 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A 1JNW_A 1G78_A 1TY9_A 1CI0_A 1NRG_A ....

>COG5015 Uncharacterized conserved protein [Function unknown]

Probab=98.85  E-value=1.5e-08  Score=83.32  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=86.3

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcchhH
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDD  130 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~~~  130 (331)
                      +.....|||++ +|.|++|+.-.--.+.+.|||.|..+..-++||.+||.|++|-+... ...|||+|.|+-+.+-+...
T Consensus        10 en~~~~laTve-~gkPrvRpfq~~f~~g~KlYfcTantK~~yKqik~np~vefcg~~kd-g~~vrlrg~a~f~~nielkk   87 (132)
T COG5015          10 ENKSVALATVE-DGKPRVRPFQVMFVEGEKLYFCTANTKPYYKQIKKNPEVEFCGMDKD-GVMVRLRGRAEFVENIELKK   87 (132)
T ss_pred             hCCcEEEEEcc-CCCcceeeccceeeeCCEEEEEeCCChHHHHHHhhCCCeEEEEecCC-ceEEEEeeeEEeccchHHHH
Confidence            55568899999 99999999988777778899999999999999999999999999755 57899999999876654433


Q ss_pred             -HHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCC
Q psy2497         131 -YFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQS  198 (331)
Q Consensus       131 -~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~  198 (331)
                       .+...|                           -+..-|+    .++-|-|.++-+.-.+.+-.+..+
T Consensus        88 ~ale~yP---------------------------~Lkeiy~----tddnpifevfyld~~e~~m~df~g  125 (132)
T COG5015          88 LALEIYP---------------------------VLKEIYP----TDDNPIFEVFYLDSGEGEMYDFSG  125 (132)
T ss_pred             HHhhhch---------------------------hhHhhcc----CCCCCEEEEEEEeeccEEEEEecC
Confidence             333222                           1222343    223355888888877776665543

>PRK06733 hypothetical protein; Provisional

Probab=98.52  E-value=6.7e-07  Score=77.31  Aligned_cols=70  Identities=19%  Similarity=0.210  Sum_probs=61.6

Q ss_pred             ceEEEEeec-CCCCeeEEEEEEEEe-eCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecC
Q psy2497          53 NAMFIATST-KNGIPSGRMVLLKSY-GKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTS  124 (331)
Q Consensus        53 ~~~~LATvd-~dG~P~~R~V~~r~~-~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~  124 (331)
                      ..+.|+|+| +||.|++.++..... |++.|+|--+..|.=+.+|++||+|+|+++.++..  +.|+|++++++
T Consensus        21 ~~~~laTv~kedG~Pnv~~Iswv~a~d~~tIr~A~~~~skT~~NLk~Np~v~I~~~~~~~~--yqIkG~a~i~~   92 (151)
T PRK06733         21 RIVTLATTDFEKQVPNVSAISWVYAVSKTSIRFAVDQRSRIVENIRHNPGVVLTIIANESV--YSISGAAEILT   92 (151)
T ss_pred             ceEEEEEEccCCCceeEEEEEEEEEcCCCEEEEEEccCcHhHHHHhhCCcEEEEEEeCCcE--EEEEEEEEEEe
Confidence            568999999 599999999887544 55679999999999999999999999999998765  99999999865

>PRK03467 hypothetical protein; Provisional

Probab=98.48  E-value=2.3e-06  Score=73.51  Aligned_cols=83  Identities=14%  Similarity=0.299  Sum_probs=66.3

Q ss_pred             HHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCe--EEEEecCCCcchhhhhcCCcEEEEEEeCCC-
Q psy2497          34 KLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNG--FVFFTNYNSRKGNELAENPQASLAFYWEPL-  110 (331)
Q Consensus        34 ~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~g--l~F~T~~~S~K~~eL~~np~val~f~~~~~-  110 (331)
                      .-+.+||.         ..++++|||.+.+ .|.+-.+.+ -+|+++  |||.|+..|++++.+.+||+|+.+..-... 
T Consensus         8 ~~I~~fl~---------~~hvltLa~~~~~-~~w~A~cFY-~fd~~~~~l~~~S~~~TrH~~~~~~np~VAgTI~~~~~~   76 (144)
T PRK03467          8 TAISRWLA---------KQHVVTLCVGQEG-ELWCANCFY-VFDAQKVAFYLLTEEKTRHGQMMGPNAQVAGTVNGQPKT   76 (144)
T ss_pred             HHHHHHHH---------hCcEEEEEEEcCC-CcceEEEEE-EEcCCCeEEEEEcCCCCHHHHHHhhCCCEEEEEcCCCcc
Confidence            45667774         5678999999965 567777754 567664  899999999999999999999999985442 


Q ss_pred             ---CeEEEEEEEEEecCCcc
Q psy2497         111 ---KRSVRIEGHVEKTSDKE  127 (331)
Q Consensus       111 ---~~qvri~G~a~~~~~~~  127 (331)
                         -+.|.++|+++.+++++
T Consensus        77 v~~I~GvQ~~G~~~~l~~~e   96 (144)
T PRK03467         77 VALIRGVQFKGEIRRLEGEE   96 (144)
T ss_pred             hhhceEEEEEEEEEecChhH
Confidence               36788999999987654

>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1

Probab=98.32  E-value=1.5e-06  Score=67.08  Aligned_cols=65  Identities=28%  Similarity=0.340  Sum_probs=55.2

Q ss_pred             CCCCccceEEEeccCCCCCCCCCCCcCCC--CceEeeecCCCccccccchhHhhCCceEEEeecCC-CCceEEEEEEeeE
Q psy2497         197 QSDRVHDRIVFKRPVPGEPLGPHSHEGED--GWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEP-LKRSVRIEGHVEK  273 (331)
Q Consensus       197 ~~~r~h~R~~f~k~~~~~~~~~~~~~~~~--gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~-l~RQVri~G~v~~  273 (331)
                      ..+.|+.|.+...            ..++  .+.|.++..|+|.     ++|.+||+|+|+|.++. ..+.|+|.|+|+.
T Consensus        22 ~dG~P~~~~v~~~------------~~~~~~~i~~~t~~~~~k~-----~nl~~np~v~l~~~~~~~~~~~v~~~G~a~~   84 (89)
T PF01243_consen   22 EDGRPHASPVWFV------------YDDDDNTIYFATNPGSRKV-----RNLRRNPRVSLLFCDPEGTRRGVRVSGTAEI   84 (89)
T ss_dssp             TTSEEEEEEEEEE------------EECTTTEEEEEEETTSHHH-----HHHHHSTEEEEEEEETTTTTEEEEEEEEEEE
T ss_pred             CCCCEEEEEEeee------------cCCceeEEEEeecCCCCch-----hhCccCCeEEEEEEEcCcCceEEEEEEEEEE
Confidence            4566888877765            2233  5899999999996     37999999999999999 9999999999999


Q ss_pred             cCHHH
Q psy2497         274 TSDKE  278 (331)
Q Consensus       274 ~~~~e  278 (331)
                      ++++|
T Consensus        85 ~~d~E   89 (89)
T PF01243_consen   85 LTDEE   89 (89)
T ss_dssp             ESHHH
T ss_pred             EcCCC
Confidence            99987

4.3.5 from EC) is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This reaction serves as the terminal step in the de novo biosynthesis of PLP in Escherichia coli and as a part of the salvage pathway of this coenzyme in both E. coli and mammalian cells [, ]. The binding sites for FMN and for substrate have been highly conserved throughout evolution. This entry represents the FMN-binding domain present in pyridoxamine 5'-phosphate oxidases, as well as in a number of proteins that have not been demonstrated to have enzymatic activity. The FMN-binding domain has a structure consisting of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. PNPOx has a different dimerisation mode than that found in flavin reductases, which also carry an FMN-binding domain with a similar topology. ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0010181 FMN binding, 0055114 oxidation-reduction process; PDB: 2IG6_A 1CI0_A 2HQ7_B 2HTD_B 3EC6_A 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A ....

>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP)

Probab=98.29  E-value=1.2e-05  Score=68.41  Aligned_cols=72  Identities=24%  Similarity=0.203  Sum_probs=59.7

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC-------------CeEEEEE
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL-------------KRSVRIE  117 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~-------------~~qvri~  117 (331)
                      +..++.||+++ +|.|.+.||.+- ++++.|||+|...++|..-|++|| |+++++.-..             -+-|.+.
T Consensus        11 ~~~~g~la~~~-~~~Py~vP~~f~-~~~~~ly~h~~~~g~k~~~l~~~p-v~~~~~~~~~~~~~~~~~~~~~~y~SVi~~   87 (143)
T PF12900_consen   11 RAPVGRLAFVD-DGYPYIVPVNFV-YDGGSLYFHGARGGKKIELLRNNP-VCFTVDEVDELVPAESACSFSMNYRSVIVF   87 (143)
T ss_dssp             H-SEEEEEEEE-TTEEEEEEEEEE-EETTEEEEEECSHSHHHHHHHHEE-EEEEEEEEEEEEETSCGGGEEEEEEEEEEE
T ss_pred             hCCEEEEEEEe-CCEEEEEEEEEE-EECCEEEEEECCcchHHHHhccCC-eEEEEEecCcEeecccCCcCcceEEEEEEE
Confidence            45678999999 788999999985 667789999999999999999999 9999985211             2569999


Q ss_pred             EEEEecCC
Q psy2497         118 GHVEKTSD  125 (331)
Q Consensus       118 G~a~~~~~  125 (331)
                      |+++.+++
T Consensus        88 G~~~~v~d   95 (143)
T PF12900_consen   88 GRAEEVED   95 (143)
T ss_dssp             EEEEEEHS
T ss_pred             EEEEEeCC
Confidence            99999754

This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....

>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme

Probab=98.13  E-value=4.9e-06  Score=67.89  Aligned_cols=66  Identities=20%  Similarity=0.165  Sum_probs=51.8

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCC-ceEEEEEEeeEcCH
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLK-RSVRIEGHVEKTSD  276 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~-RQVri~G~v~~~~~  276 (331)
                      .+.|+.+.+....          ..+++.+.|+|...|+|.     ++|+.||+|||+|+++... ++|+|+|.++.+++
T Consensus         8 ~G~P~~~pv~~~~----------~~~~~~l~f~t~~~s~k~-----~~l~~np~v~l~~~~~~~~~~~v~i~G~a~~v~d   72 (117)
T TIGR03618         8 DGRPQLSPVWFGV----------DPDGDILVVSTTAGRAKA-----RNLRRDPRVSLSVLDPDFPYRYVEVEGTAELVED   72 (117)
T ss_pred             CCCEEEEEEEEEE----------cCCCCEEEEEecCCcHhh-----HhhhhCCeEEEEEECCCCCccEEEEEEEEEEecC
Confidence            4567777655430          113344889999999996     3699999999999999887 99999999999987


Q ss_pred             HH
Q psy2497         277 KE  278 (331)
Q Consensus       277 ~e  278 (331)
                      ++
T Consensus        73 ~~   74 (117)
T TIGR03618        73 PD   74 (117)
T ss_pred             Cc
Confidence            54

A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.

>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family

Probab=97.79  E-value=5.4e-05  Score=63.78  Aligned_cols=75  Identities=17%  Similarity=0.095  Sum_probs=55.8

Q ss_pred             cCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCC-CceEEEEEEeeEc
Q psy2497         196 GQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPL-KRSVRIEGHVEKT  274 (331)
Q Consensus       196 ~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l-~RQVri~G~v~~~  274 (331)
                      ...|.||.|-+...            .+++...|+|...|+|.     ++|..||+|+|+|+.+.- .++|+|+|+|+-+
T Consensus        23 ~~dG~P~~~P~~~~------------~~d~~l~~~t~~~s~K~-----~~l~~np~Vsl~~~~~~~~~~~v~v~G~a~i~   85 (130)
T TIGR03667        23 RRSGQPQPVPVWFL------------WDGTEFLIYSRPQAAKL-----RNIRRNPRVSLHLNSDGRGGDVVVFTGTAEVV   85 (130)
T ss_pred             CCCCceEEEEEEEE------------EECCEEEEEeCCcCHHH-----HHHhhCCcEEEEEEcCCCCceEEEEEEEEEEe
Confidence            34567888866554            24555778999999995     379999999999988554 4899999999988


Q ss_pred             CHH----HHHHHHhcCC
Q psy2497         275 SDK----ESDDYFQSRP  287 (331)
Q Consensus       275 ~~~----es~~yf~~Rp  287 (331)
                      .+.    +.++||...+
T Consensus        86 ~d~~~~~~~~~~~~~y~  102 (130)
T TIGR03667        86 ADAPPAREIPAYLAKYR  102 (130)
T ss_pred             CCchhHHHHHHHHHHhh
Confidence            755    4556666433

A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.

>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]

Probab=97.77  E-value=0.00021  Score=62.95  Aligned_cols=75  Identities=25%  Similarity=0.190  Sum_probs=63.2

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCC----------C--CeEEEEEE
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEP----------L--KRSVRIEG  118 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~----------~--~~qvri~G  118 (331)
                      ...++.||+++ +|+|.+-|+.+. ++++.||||+...++|+.-|+.||.||+......          .  -+-|.+.|
T Consensus        22 ~~~~~~La~~~-~~~PyivP~~y~-~~~~~lY~h~~~~grk~~~l~~~p~V~~ev~~~~~~~~~~~~~~s~~y~SVvv~G   99 (166)
T COG3467          22 AGRVGRLAFAG-DGQPYVVPLNYG-YEGGHLYFHGSPEGRKIELLRKNPLVCLEVDEIHGLVLKSPFNSSRNYRSVVVFG   99 (166)
T ss_pred             hCCEEEEEEcC-CCCcEEEEeEeE-EeCCeEEEEeCCcchhhHHhhcCCcEEEEEEccccceecccccCCcceEEEEEEe
Confidence            55789999998 456999999985 5666799999999999999999999999998655          2  25688899


Q ss_pred             EEEecCCcc
Q psy2497         119 HVEKTSDKE  127 (331)
Q Consensus       119 ~a~~~~~~~  127 (331)
                      +++.+++.+
T Consensus       100 ~~~~l~~~~  108 (166)
T COG3467         100 RAEELSDLE  108 (166)
T ss_pred             EEEEcCChH
Confidence            999998743

>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C

Probab=97.69  E-value=0.00042  Score=61.21  Aligned_cols=115  Identities=17%  Similarity=0.244  Sum_probs=68.5

Q ss_pred             CceEEEEeecC----CCCeeEEEEEEEE---eeCCe-EEEEecCCCcchhhhhcCCcEEEEEEeCCCC------------
Q psy2497          52 ANAMFIATSTK----NGIPSGRMVLLKS---YGKNG-FVFFTNYNSRKGNELAENPQASLAFYWEPLK------------  111 (331)
Q Consensus        52 ~~~~~LATvd~----dG~P~~R~V~~r~---~~~~g-l~F~T~~~S~K~~eL~~np~val~f~~~~~~------------  111 (331)
                      .+..+|+|++.    +|.|-.-.|.+-.   .+.+| .+|+-..-+...++|.+||+|+|++.++...            
T Consensus        17 ~~~g~LsTls~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~~~~~~~~~~~~dp~~~   96 (170)
T PF13883_consen   17 SRWGTLSTLSTQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISEPQGGDCDNSGVDPEDP   96 (170)
T ss_dssp             -SEEEEEEE--SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEGGGSSHHHHHT--TTST
T ss_pred             CCEEEEEeccCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEecCCCCcccccCCCCCCC
Confidence            45688999988    8999998887751   23344 8999999999999999999999999977543            


Q ss_pred             --eEEEEEEEEEecCCcchh----HHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEE
Q psy2497         112 --RSVRIEGHVEKTSDKESD----DYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYV  185 (331)
Q Consensus       112 --~qvri~G~a~~~~~~~~~----~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~  185 (331)
                        --|.|.|+++.++.++.+    .|+..-|                           ..+.|++.+    .+.+|..++
T Consensus        97 ~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP---------------------------~a~~w~~~~----~~hdf~~~r  145 (170)
T PF13883_consen   97 ACPRVTLTGRAEPVPPDEAAAARAAYLSRHP---------------------------DAKHWLPFN----SPHDFFFYR  145 (170)
T ss_dssp             TS-EEEEEEEEEE--TTTHHHHHHHHHHH-G---------------------------GGGGS-GG-------G--EEEE
T ss_pred             CCcEEEEEEEEEEcCchHHHHHHHHHHHHCc---------------------------Ccccccccc----ccCccEEEE
Confidence              368999999998755421    1222111                           111122211    246799999


Q ss_pred             EeceEEEeeecC
Q psy2497         186 VIPKVIEFWQGQ  197 (331)
Q Consensus       186 v~p~~iEfwq~~  197 (331)
                      |.|++|-|..+-
T Consensus       146 l~i~~v~~vgGF  157 (170)
T PF13883_consen  146 LEIERVYLVGGF  157 (170)
T ss_dssp             EEEEEEEEE-SS
T ss_pred             EEEEEEEEECcc
Confidence            999999887553

>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E

Probab=97.66  E-value=7.7e-05  Score=60.39  Aligned_cols=61  Identities=23%  Similarity=0.287  Sum_probs=49.6

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCC------CCceEeeecCCCccccccchhHh-hCCceEEEeecCCCCceEEEEEE
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGE------DGWYYERLFPQPKQGIQYLHLKA-ENPQASLAFYWEPLKRSVRIEGH  270 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~------~gw~f~tl~pS~K~~~~~~~~l~-~np~aal~f~W~~l~RQVri~G~  270 (331)
                      .+.|..|.+..+           +...      +-..|+|..-|.|..     +|. .||.++++||-+...-|+||.|.
T Consensus        32 ~~~P~~RTvVlR-----------gf~~~~~~~~~~L~f~TD~RS~Kv~-----~l~~~~p~~e~~~~~~~~~~Q~Ri~G~   95 (100)
T PF12766_consen   32 DGSPRVRTVVLR-----------GFDPDLKPESDLLTFHTDARSPKVA-----QLASANPRVELVFWFPETREQFRIRGR   95 (100)
T ss_dssp             TTEEEEEEEEEE-----------EEETT----TTEEEEEEETTSHHHH-----HHH-H--EEEEEEEECCCTEEEEEEEE
T ss_pred             CCCCceeEEEEc-----------CcccccccccCeEEEEecCCchhHH-----HHhccCCCEEEEEEeCCccEEEEEEEE
Confidence            455899999887           2333      348999999999973     799 99999999999999999999999


Q ss_pred             eeEc
Q psy2497         271 VEKT  274 (331)
Q Consensus       271 v~~~  274 (331)
                      |.-+
T Consensus        96 a~ii   99 (100)
T PF12766_consen   96 ASII   99 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9754

coli and mammalian cells. This entry represents the FMN-binding domain of pyridoxamine 5'-phosphate oxidases that belong to the Alr4036 family.; GO: 0010181 FMN binding; PDB: 2I51_B 2OU5_B.

>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein

Probab=96.92  E-value=0.0095  Score=49.26  Aligned_cols=75  Identities=17%  Similarity=0.230  Sum_probs=59.1

Q ss_pred             ceEEEEeec-CCCCeeEEEEEEEEeeCCeEEEE-ecC----CCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCc
Q psy2497          53 NAMFIATST-KNGIPSGRMVLLKSYGKNGFVFF-TNY----NSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDK  126 (331)
Q Consensus        53 ~~~~LATvd-~dG~P~~R~V~~r~~~~~gl~F~-T~~----~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~  126 (331)
                      ..+.|.|++ .+|.|+.-+|.+-. ++++++++ ++.    ++..+.||.+||.|.|.+-    .  -+..+++++++++
T Consensus         8 p~~lL~t~GRkSG~~r~tpl~~~~-~~~~~~vvas~~G~~~~p~W~~Nl~A~p~v~v~~~----g--~~~~~~ar~v~~~   80 (113)
T TIGR00026         8 PVLLLTTTGRKSGKPRTTPVTYVR-HDPGVLIVASNGGAPRHPDWYKNLKANPRVRVRVG----G--KTFVATARLVSGD   80 (113)
T ss_pred             CEEEEEECCCCCCcEEEEEEEEEE-ECCEEEEEEecCCCCCCCHHHHHhhhCCcEEEEEC----C--EEEEEEEEECCch
Confidence            378899995 58999999998754 44567665 665    4777999999999999872    1  2579999999999


Q ss_pred             chhHHHhc
Q psy2497         127 ESDDYFQS  134 (331)
Q Consensus       127 ~~~~~~~~  134 (331)
                      +.++.|..
T Consensus        81 e~~~~~~~   88 (113)
T TIGR00026        81 ERDQLWAG   88 (113)
T ss_pred             hHHHHHHH
Confidence            88888853

This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.

>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]

Probab=95.55  E-value=0.035  Score=47.64  Aligned_cols=72  Identities=18%  Similarity=0.305  Sum_probs=56.2

Q ss_pred             CCCCccceEEEeccCCCCCCCCCCCcCC-CCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcC
Q psy2497         197 QSDRVHDRIVFKRPVPGEPLGPHSHEGE-DGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTS  275 (331)
Q Consensus       197 ~~~r~h~R~~f~k~~~~~~~~~~~~~~~-~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~  275 (331)
                      ..+.+|.|--...           +.+. ....|+|+..|+|.     ++|..||+|+++|--..-.-=|-|+|.++-+.
T Consensus        27 ~~g~phsRpM~f~-----------hdg~~~tiwf~T~kds~~v-----~eik~n~~v~v~~~~~~~~~fv~v~Gtael~~   90 (145)
T COG3871          27 ENGHPHSRPMTFN-----------HDGPKGTIWFFTNKDSRKV-----EEIKKNPKVCVLFGYDDHDAFVEVSGTAELVE   90 (145)
T ss_pred             CCCCccccceecc-----------CCCCcccEEeeccCchHHH-----HHHhhCCcEEEEEecCCCcceEEEEEEEEeec
Confidence            3457999987755           1222 56899999999996     47999999999999998878899999999887


Q ss_pred             HHHH-HHHHh
Q psy2497         276 DKES-DDYFQ  284 (331)
Q Consensus       276 ~~es-~~yf~  284 (331)
                      +... +.+|.
T Consensus        91 dra~~d~~W~  100 (145)
T COG3871          91 DRAKIDELWT  100 (145)
T ss_pred             cHHHHHHhhh
Confidence            6543 44443

>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family

Probab=95.05  E-value=0.1  Score=44.17  Aligned_cols=69  Identities=13%  Similarity=0.011  Sum_probs=48.7

Q ss_pred             CCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCC-ceEEEEEEeeEcC
Q psy2497         197 QSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLK-RSVRIEGHVEKTS  275 (331)
Q Consensus       197 ~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~-RQVri~G~v~~~~  275 (331)
                      ..+.+|.+-+..-            .+++...|.+...|+|.     +.|..||+||+++.=..-. +-|.|+|+|+.++
T Consensus        22 ~dG~P~~~Pv~~~------------~d~g~l~f~t~~~~~K~-----~nl~~np~Vsl~v~~~~~~~~~v~v~G~A~~v~   84 (132)
T TIGR03666        22 KDGTPVPTPVWAA------------VDGDKLLVRTKEDSWKV-----KRIRNNPRVTLAPCDRRGRPTGPVVPGRARILD   84 (132)
T ss_pred             CCCcEEEEEEEEE------------EECCEEEEEECCcCHHH-----HHHHhCCCEEEEEECCCCCEeEEEEEEEEEEEc
Confidence            3456777654443            24556888888889895     3799999999998421111 3499999999998


Q ss_pred             HHHHHHH
Q psy2497         276 DKESDDY  282 (331)
Q Consensus       276 ~~es~~y  282 (331)
                      ++|...-
T Consensus        85 ~~e~~~~   91 (132)
T TIGR03666        85 GAETARA   91 (132)
T ss_pred             chhHHHH
Confidence            7777644

A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.

>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]

Probab=93.93  E-value=0.12  Score=45.88  Aligned_cols=74  Identities=18%  Similarity=0.229  Sum_probs=55.4

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEE-eeCCeEEEEecC-CCcchhh-hhcCCcEEEEEEeCC-CCeEEEEEEEEEecC
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKS-YGKNGFVFFTNY-NSRKGNE-LAENPQASLAFYWEP-LKRSVRIEGHVEKTS  124 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~-~~~~gl~F~T~~-~S~K~~e-L~~np~val~f~~~~-~~~qvri~G~a~~~~  124 (331)
                      -...++|||+|.||.|..-++.+.. .|.+++.+-+|. ...|... |..||++++.+.... ...-+.|.|++++..
T Consensus        40 ~~~~~~laT~d~dG~p~~~~~p~~qr~d~~~~~~v~d~~~~~~~~~~lgnn~~~tl~n~~~~~~~~~f~v~gt~~I~~  117 (173)
T COG3576          40 TSQLAALATVDKDGPPNVDPIPFAQRGDPAGFTIVIDDNTAGKTDRNLGNNPKITLRNILRNRRALLFLVKGTARIQG  117 (173)
T ss_pred             cccEEEEEEeccCCCCCcCccchhhccCCCCceEEeCcccccccccccccCccceeEEeccCCccceEEecceEEEEe
Confidence            4567899999999999988887633 343666555554 4455444 899999999999873 556688999988754

>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces

Probab=93.91  E-value=0.2  Score=42.43  Aligned_cols=74  Identities=15%  Similarity=0.235  Sum_probs=53.1

Q ss_pred             ceEEEEeec-CCCCeeEEEEEEEEeeCCeEEEEec-----CCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCc
Q psy2497          53 NAMFIATST-KNGIPSGRMVLLKSYGKNGFVFFTN-----YNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDK  126 (331)
Q Consensus        53 ~~~~LATvd-~dG~P~~R~V~~r~~~~~gl~F~T~-----~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~  126 (331)
                      ..+.|.|++ .+|.|+.-+|.+.. +++.+++...     .++.=+.||.+||.|.|.+-      .-+..++++.++++
T Consensus        26 ~~~lLtt~GRkSG~~r~tpl~~~~-~g~~~~vva~~gG~~~~p~W~~Nl~A~p~v~v~~~------g~~~~~~a~~~~~~   98 (132)
T PF04075_consen   26 PVLLLTTTGRKSGRPRRTPLVYVR-DGGRLVVVASNGGAPRHPDWYRNLRANPEVTVEVG------GRRRRVRAREVTDD   98 (132)
T ss_dssp             EEEEEEEE-TTT-SEEEEEEEEEE-ETTEEEEE-SGGGCSSS-HHHHHHHHHSEEEEEET------TEEEEEEEEEE-HH
T ss_pred             cEEEEEECCCCCCCeEEEEEEEEE-eCCEEEEEEccCCCCCCChhHHhhhhCCcEEEEEC------CEEEEEEEEEcCch
Confidence            368999997 48999999997653 4456666555     36778899999999999762      24678888999988


Q ss_pred             chhHHHh
Q psy2497         127 ESDDYFQ  133 (331)
Q Consensus       127 ~~~~~~~  133 (331)
                      +.+++|.
T Consensus        99 er~~~~~  105 (132)
T PF04075_consen   99 ERARLWA  105 (132)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888874

Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.

>COG5135 Uncharacterized conserved protein [Function unknown]

Probab=90.77  E-value=0.12  Score=46.50  Aligned_cols=74  Identities=19%  Similarity=0.181  Sum_probs=57.6

Q ss_pred             CCccceEEEeccCCCCCCCCC-CCcCCCCceEeeecCCCccccccchhHhhCC-----------ceEEEeecCCCCceEE
Q psy2497         199 DRVHDRIVFKRPVPGEPLGPH-SHEGEDGWYYERLFPQPKQGIQYLHLKAENP-----------QASLAFYWEPLKRSVR  266 (331)
Q Consensus       199 ~r~h~R~~f~k~~~~~~~~~~-~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np-----------~aal~f~W~~l~RQVr  266 (331)
                      +.+.-|.+..+       |-+ .+.-.+-.+|.|...|-|..     +|+..|           .+.++||.|+.-.|+|
T Consensus        36 ~~PrnRTVvfR-------gFl~~D~~tn~L~F~TD~rS~Ki~-----ei~~qp~~~~~s~~~~~~fEaC~yfP~T~eQ~R  103 (245)
T COG5135          36 NKPRNRTVVFR-------GFLFHDKRTNVLTFNTDMRSSKIT-----EIFIQPNSNNSSDSKTPFFEACFYFPETWEQYR  103 (245)
T ss_pred             CCCccceEEEe-------eeeecccccceEEEecchhhhhhh-----HHhhccccCCCCCCCccHHHHHhcccchhhheE
Confidence            55667777665       211 01113468899999999963     688888           8889999999999999


Q ss_pred             EEEEeeEcCHHHHHHHHh
Q psy2497         267 IEGHVEKTSDKESDDYFQ  284 (331)
Q Consensus       267 i~G~v~~~~~~es~~yf~  284 (331)
                      |.|.+-.++.+.++.-|.
T Consensus       104 isGQ~~l~s~~~~~~~~~  121 (245)
T COG5135         104 ISGQCFLISKQFKYDIFS  121 (245)
T ss_pred             eeeeEEEEchhhcCcccC
Confidence            999999999999977664

>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family

Probab=89.82  E-value=0.47  Score=40.62  Aligned_cols=34  Identities=35%  Similarity=0.450  Sum_probs=26.4

Q ss_pred             hhHhhCCceEEEee-----cCCCCceEEEEEEeeEcCHHH
Q psy2497         244 HLKAENPQASLAFY-----WEPLKRSVRIEGHVEKTSDKE  278 (331)
Q Consensus       244 ~~l~~np~aal~f~-----W~~l~RQVri~G~v~~~~~~e  278 (331)
                      +.|..||+||+++.     |... +.|+|+|+|+.+.+.+
T Consensus        65 ~ni~~nPrVs~~v~~~~~~~~~~-~~v~v~G~a~~~~d~~  103 (141)
T TIGR03668        65 RNIEENPRVSLLVDRYDDDWTRL-WWVRADGRAEILRPGE  103 (141)
T ss_pred             HHHhhCCCEEEEEecCCCCccce-EEEEEEEEEEEecCCc
Confidence            47999999999762     2222 5699999999988876

A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.

>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.29  E-value=2.2  Score=36.15  Aligned_cols=121  Identities=11%  Similarity=0.170  Sum_probs=80.9

Q ss_pred             CceEEEEeecCCCCeeEEEEEEEEeeCC--eEEEEecCCCcchhhhhcCCcEEEEEEeCCC----CeEEEEEEEEEecCC
Q psy2497          52 ANAMFIATSTKNGIPSGRMVLLKSYGKN--GFVFFTNYNSRKGNELAENPQASLAFYWEPL----KRSVRIEGHVEKTSD  125 (331)
Q Consensus        52 ~~~~~LATvd~dG~P~~R~V~~r~~~~~--gl~F~T~~~S~K~~eL~~np~val~f~~~~~----~~qvri~G~a~~~~~  125 (331)
                      .+++++|-.+ +|.|.+-...+ -+|+.  .|++.|+..+++.+=+..|+.|+.+..-+..    -+.|..+|+.+.++.
T Consensus        12 q~v~Tw~~~~-e~~~w~asafY-vFDek~~ali~~T~e~TrHa~l~~~ns~VAgtv~~qsKtva~ikGVQfkge~~~l~~   89 (145)
T COG3787          12 QHVLTWCVQQ-EGELWCASAFY-VFDEKNVALIILTEEKTRHAQLSGPNSAVAGTVAGQSKTVALIKGVQFKGEISRLSG   89 (145)
T ss_pred             hheeeeeeec-CCceeeeeeEE-EEcccceEEEEEeccchhHHHhhCCCCceeeEeccCceeeeeeeeeeeeeeehhhhc
Confidence            4567887766 56677776654 46655  5899999999999999999999999987663    367888888888876


Q ss_pred             cchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceE
Q psy2497         126 KESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRI  205 (331)
Q Consensus       126 ~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~  205 (331)
                      +++++.                              .+.+...||-.. +   ..-.+|.|.+..|-|=+..-| +..-+
T Consensus        90 ~q~~~A------------------------------rk~Y~~rfp~ak-v---d~a~vwqleL~~ikftdNaLG-~~kkl  134 (145)
T COG3787          90 EQSDAA------------------------------RKAYNRRFPVAK-V---DSAPVWQLELDEIKFTDNALG-FGKKL  134 (145)
T ss_pred             chHHHH------------------------------HHHHhccCchhh-c---ccCceEEeeeeeEEeeccccc-ccceE
Confidence            654321                              112222333221 1   114578888888888766544 33445


Q ss_pred             EEec
Q psy2497         206 VFKR  209 (331)
Q Consensus       206 ~f~k  209 (331)
                      .|.|
T Consensus       135 ew~r  138 (145)
T COG3787         135 EWLR  138 (145)
T ss_pred             EEec
Confidence            5554

>PRK03467 hypothetical protein; Provisional

Probab=87.92  E-value=1.2  Score=38.37  Aligned_cols=59  Identities=17%  Similarity=0.246  Sum_probs=45.9

Q ss_pred             CceEeeecCCCccccccchhHhhCCceEEEeecCCC-CceEE---EEEEeeEcCHHH----HHHHHhcCCCC
Q psy2497         226 GWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPL-KRSVR---IEGHVEKTSDKE----SDDYFQSRPYA  289 (331)
Q Consensus       226 gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l-~RQVr---i~G~v~~~~~~e----s~~yf~~Rp~~  289 (331)
                      .++|.|...|+.+     +.+.+||+||.+..=.+- -..|+   ++|.+..|+.+|    -..|+..-|..
T Consensus        45 ~l~~~S~~~TrH~-----~~~~~np~VAgTI~~~~~~v~~I~GvQ~~G~~~~l~~~e~~~Ar~~Y~~rFP~A  111 (144)
T PRK03467         45 AFYLLTEEKTRHG-----QMMGPNAQVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDAARKRYNRRFPVA  111 (144)
T ss_pred             EEEEEcCCCCHHH-----HHHhhCCCEEEEEcCCCcchhhceEEEEEEEEEecChhHHHHHHHHHHHhCcch
Confidence            3567777788885     369999999999985432 33444   999999999999    78899888865

>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C

Probab=85.20  E-value=0.78  Score=40.44  Aligned_cols=46  Identities=22%  Similarity=0.274  Sum_probs=31.4

Q ss_pred             hhHhhCCceEEEeecCCCC--------------ceEEEEEEeeEcCHHH----HHHHHhcCCCC
Q psy2497         244 HLKAENPQASLAFYWEPLK--------------RSVRIEGHVEKTSDKE----SDDYFQSRPYA  289 (331)
Q Consensus       244 ~~l~~np~aal~f~W~~l~--------------RQVri~G~v~~~~~~e----s~~yf~~Rp~~  289 (331)
                      +.|.+||++||++.|+...              --|.+.|.+++++.+|    ...||..-|..
T Consensus        66 ~nl~~~~r~SL~i~~~~~~~~~~~~~dp~~~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP~a  129 (170)
T PF13883_consen   66 RNLKADPRVSLTISEPQGGDCDNSGVDPEDPACPRVTLTGRAEPVPPDEAAAARAAYLSRHPDA  129 (170)
T ss_dssp             HHHHH--EEEEEEEGGGSSHHHHHT--TTSTTS-EEEEEEEEEE--TTTHHHHHHHHHHH-GGG
T ss_pred             HHHhhCCCEEEEEecCCCCcccccCCCCCCCCCcEEEEEEEEEEcCchHHHHHHHHHHHHCcCc
Confidence            3699999999999998665              4589999999998764    55666655543

>PRK06733 hypothetical protein; Provisional

Probab=84.38  E-value=2.4  Score=36.92  Aligned_cols=47  Identities=15%  Similarity=0.055  Sum_probs=34.2

Q ss_pred             CCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCH
Q psy2497         223 GEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSD  276 (331)
Q Consensus       223 ~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~  276 (331)
                      +++...|.-+.-|+=.     +-|.+||+|+|+|+++...  ..|.|.++-+.+
T Consensus        47 d~~tIr~A~~~~skT~-----~NLk~Np~v~I~~~~~~~~--yqIkG~a~i~~e   93 (151)
T PRK06733         47 SKTSIRFAVDQRSRIV-----ENIRHNPGVVLTIIANESV--YSISGAAEILTD   93 (151)
T ss_pred             CCCEEEEEEccCcHhH-----HHHhhCCcEEEEEEeCCcE--EEEEEEEEEEee
Confidence            4566666666655442     4799999999999999888  666777766553

>KOG3374|consensus

Probab=83.52  E-value=15  Score=32.75  Aligned_cols=70  Identities=20%  Similarity=0.251  Sum_probs=50.1

Q ss_pred             EEEeec-CCCCeeEEEEEEEEeeCC---e-EEEEecCCCcchhhhhcCCcEEEEEEeCCCC--------------eEEEE
Q psy2497          56 FIATST-KNGIPSGRMVLLKSYGKN---G-FVFFTNYNSRKGNELAENPQASLAFYWEPLK--------------RSVRI  116 (331)
Q Consensus        56 ~LATvd-~dG~P~~R~V~~r~~~~~---g-l~F~T~~~S~K~~eL~~np~val~f~~~~~~--------------~qvri  116 (331)
                      +|+|-. -.|.|-+-.|.+-+=+.+   | .|||-..--.-+.++++||+|+|+|....+.              --+.|
T Consensus        62 TlSt~e~vkG~Pf~nViS~sDg~p~~gtG~pyFyLt~Ld~t~~n~qkd~~atL~~s~~qt~~Ck~~g~DPm~PtC~~~ml  141 (210)
T KOG3374|consen   62 TLSTNERVKGYPFVNVISISDGDPNNGTGRPYFYLTDLDFTGPNWQKDNKATLLFSDEQTLRCKEGGKDPMEPTCARSML  141 (210)
T ss_pred             eeeecccccCCccceEEEccCCCCcCCCCceEEEeccCCCCCcccccCCceeEEeeccccchhhcCCCCCCCchhhhhee
Confidence            454432 157777777766433322   4 7999888888899999999999999876532              35778


Q ss_pred             EEEEEecCC
Q psy2497         117 EGHVEKTSD  125 (331)
Q Consensus       117 ~G~a~~~~~  125 (331)
                      +|++.++..
T Consensus       142 sG~v~k~~~  150 (210)
T KOG3374|consen  142 SGQVKKMDP  150 (210)
T ss_pred             cceEEEeCC
Confidence            999988764

>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation []

Probab=82.50  E-value=34  Score=30.17  Aligned_cols=72  Identities=11%  Similarity=0.050  Sum_probs=47.3

Q ss_pred             CceEEEEeecCCCCeeEEEEEEEEee---CC-eEEEEecCCCcchhhhhcCCcEEEEEEeCCC-----------------
Q psy2497          52 ANAMFIATSTKNGIPSGRMVLLKSYG---KN-GFVFFTNYNSRKGNELAENPQASLAFYWEPL-----------------  110 (331)
Q Consensus        52 ~~~~~LATvd~dG~P~~R~V~~r~~~---~~-gl~F~T~~~S~K~~eL~~np~val~f~~~~~-----------------  110 (331)
                      ...++|.|.+.+| |.+-.+-+.-..   +. .|..+-....+-.+.|..+..|-+.|.-|..                 
T Consensus        22 ~pfa~Lvt~~~~~-~~athlP~~l~~~~~~~~~L~gHlAr~NP~~~~l~~~~~vl~iF~Gp~aYISPsWYp~k~~~~~~V  100 (169)
T PF04299_consen   22 HPFATLVTNGDGG-PVATHLPFLLDEDDGGRGTLIGHLARANPQWKALDDGQEVLVIFQGPHAYISPSWYPTKAEHGKVV  100 (169)
T ss_dssp             S-EEEEEEEETTE-EEEEEEE-EE-T---TSSEEEEEEETTSGGGGGTT-TS-EEEEEEEEEEEE-CCCS----STTS--
T ss_pred             CCcEEEEEcCCCC-cceeeecEEEEeeeCCCCEEEEEeCCCCHhHhhcCCCCcEEEEEECCCeeECchhhcccCcCCCCC
Confidence            3457888877554 888877664322   22 3899999999999999989899888874321                 


Q ss_pred             ----CeEEEEEEEEEecC
Q psy2497         111 ----KRSVRIEGHVEKTS  124 (331)
Q Consensus       111 ----~~qvri~G~a~~~~  124 (331)
                          -.-|-+.|+++++.
T Consensus       101 PTWNY~aVh~~G~~~~~~  118 (169)
T PF04299_consen  101 PTWNYAAVHAYGTVRIID  118 (169)
T ss_dssp             -EEEEEEEEEEEEEEE--
T ss_pred             CCcCEEEEEEEEEEEEEe
Confidence                14477888888764

; PDB: 2OL5_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	331
1nrg_A	261	Structure And Properties Of Recombinant Human Pyrid		2e-65
1nrg_A	261	Structure And Properties Of Recombinant Human Pyrid		5e-16
3hy8_A	261	Crystal Structure Of Human Pyridoxine 5'-Phosphate		3e-64
3hy8_A	261	Crystal Structure Of Human Pyridoxine 5'-Phosphate		5e-16
1ci0_A	228	Pnp Oxidase From Saccharomyces Cerevisiae Length =		1e-37
1ci0_A	228	Pnp Oxidase From Saccharomyces Cerevisiae Length =		1e-13
1g76_A	218	X-Ray Structure Of Escherichia Coli Pyridoxine 5'-P		2e-36
1g76_A	218	X-Ray Structure Of Escherichia Coli Pyridoxine 5'-P		9e-10
1g77_A	218	X-Ray Structure Of Escherichia Coli Pyridoxine 5`-P		2e-35
1g77_A	218	X-Ray Structure Of Escherichia Coli Pyridoxine 5`-P		7e-10
1dnl_A	199	X-Ray Structure Of Escherichia Coli Pyridoxine 5'-P		2e-35
1dnl_A	199	X-Ray Structure Of Escherichia Coli Pyridoxine 5'-P		6e-10
2a2j_A	246	Crystal Structure Of A Putative Pyridoxine 5'-Phosp		1e-33
2a2j_A	246	Crystal Structure Of A Putative Pyridoxine 5'-Phosp		2e-09
1t9m_A	214	X-Ray Crystal Structure Of Phzg From Pseudomonas Ae		2e-22
1t9m_A	214	X-Ray Crystal Structure Of Phzg From Pseudomonas Ae		1e-04
1ty9_A	222	X-Ray Crystal Structure Of Phzg From Pseudomonas Fl		3e-19

>pdb|1NRG|A Chain A, Structure And Properties Of Recombinant Human Pyridoxine-5'-Phosphate Oxidase Length = 261

Iteration: 1
 Score =  245 bits (626), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/233 (52%), Positives = 159/233 (68%), Gaps = 4/233 (1%)
Query: 5   STTDLKDKRVPYKSRNEVLLEKDIVK-EPFKLFESWFHEANNTPGIIEANAMFIATSTKN 63
           +  DL   R  Y+   E   E  +   +P K F +WF EA   P I EANAM +AT T++
Sbjct: 30  AAMDLGPMRKSYRGDREAFEETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATCTRD 89
Query: 64  GIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKT 123
           G PS RM+LLK +GK+GF FFTN+ SRKG EL  NP ASL FYWEPL R VR+EG V+K 
Sbjct: 90  GKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKL 149
Query: 124 SDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGG 183
            ++E++ YF SRP +S+IGA+ S QS     R+ + K  EEL Q Y++ + VP+PK WGG
Sbjct: 150 PEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQE-VPKPKSWGG 208
Query: 184 YVVIPKVIEFWQGQSDRVHDRIVFKRPVPG--EPLGPHSHEGEDGWYYERLFP 234
           YV+ P+V+EFWQGQ++R+HDRIVF+R +P    PLGP +H GE+ W YERL P
Sbjct: 209 YVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGDSPLGPMTHRGEEDWLYERLAP 261

>pdb|1NRG|A Chain A, Structure And Properties Of Recombinant Human Pyridoxine-5'-Phosphate Oxidase Length = 261

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 249 NPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQ 308
           NP ASL FYWEPL R VR+EG V+K  ++E++ YF SRP +S+IGA+ S QS     R+ 
Sbjct: 124 NPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREY 183
Query: 309 MSKITEELRQKYKEGDYVPRPK 330
           + K  EEL Q Y++ + VP+PK
Sbjct: 184 LRKKNEELEQLYQDQE-VPKPK 204

>pdb|3HY8|A Chain A, Crystal Structure Of Human Pyridoxine 5'-Phosphate Oxidase R229w Mutant Length = 261

Iteration: 1
 Score =  242 bits (617), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 121/233 (51%), Positives = 158/233 (67%), Gaps = 4/233 (1%)
Query: 5   STTDLKDKRVPYKSRNEVLLEKDIVK-EPFKLFESWFHEANNTPGIIEANAMFIATSTKN 63
           +  DL   R  Y+   E   E  +   +P K F +WF EA   P I EANAM +AT T++
Sbjct: 30  AAMDLGPMRKSYRGDREAFEETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATCTRD 89
Query: 64  GIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKT 123
           G PS RM+LLK +GK+GF FFTN+ SRKG EL  NP ASL FYWEPL R VR+EG V+K 
Sbjct: 90  GKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKL 149
Query: 124 SDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGG 183
            ++E++ YF SRP +S+IGA+ S QS     R+ + K  EEL Q Y++ + VP+PK WGG
Sbjct: 150 PEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQE-VPKPKSWGG 208
Query: 184 YVVIPKVIEFWQGQSDRVHDRIVFKRPVPG--EPLGPHSHEGEDGWYYERLFP 234
           YV+ P+V+EFWQGQ++R+HD IVF+R +P    PLGP +H GE+ W YERL P
Sbjct: 209 YVLYPQVMEFWQGQTNRLHDWIVFRRGLPTGDSPLGPMTHRGEEDWLYERLAP 261

>pdb|3HY8|A Chain A, Crystal Structure Of Human Pyridoxine 5'-Phosphate Oxidase R229w Mutant Length = 261

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 249 NPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQ 308
           NP ASL FYWEPL R VR+EG V+K  ++E++ YF SRP +S+IGA+ S QS     R+ 
Sbjct: 124 NPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREY 183
Query: 309 MSKITEELRQKYKEGDYVPRPK 330
           + K  EEL Q Y++ + VP+PK
Sbjct: 184 LRKKNEELEQLYQDQE-VPKPK 204

>pdb|1CI0|A Chain A, Pnp Oxidase From Saccharomyces Cerevisiae Length = 228

Iteration: 1
 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/196 (37%), Positives = 121/196 (61%), Gaps = 2/196 (1%)
Query: 22  VLLEKDIVKEPFKLFESWFHEANNTPGIIEANAM-FIATSTKNGIPSGRMVLLKSYGKNG 80
            L EK +  +P  LF  WF+EA   P      A+ F +    +G  S R++L K     G
Sbjct: 25  TLNEKQLTDDPIDLFTKWFNEAKEDPRETLPEAITFSSAELPSGRVSSRILLFKELDHRG 84
Query: 81  FVFFTNY-NSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYAS 139
           F  ++N+  SRK +++A NP A++ F+W+ L+R VR+EG  E  + + S+ YF++RP  S
Sbjct: 85  FTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGS 144
Query: 140 KIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSD 199
           KIGA AS QS   ++R+++ ++T++  +++K+ + +P P +WGG  ++P  IEFWQG+  
Sbjct: 145 KIGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPS 204
Query: 200 RVHDRIVFKRPVPGEP 215
           R+HDR V++R    +P
Sbjct: 205 RLHDRFVYRRKTENDP 220

>pdb|1CI0|A Chain A, Pnp Oxidase From Saccharomyces Cerevisiae Length = 228

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 60/88 (68%)
Query: 244 HLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPC 303
           H  A NP A++ F+W+ L+R VR+EG  E  + + S+ YF++RP  SKIGA AS QS   
Sbjct: 98  HDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSKIGAWASRQSDVI 157
Query: 304 ESRDQMSKITEELRQKYKEGDYVPRPKH 331
           ++R+++ ++T++  +++K+ + +P P +
Sbjct: 158 KNREELDELTQKNTERFKDAEDIPCPDY 185

>pdb|1G76|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine 5'-Phosphate Oxidase Complexed With Pyridoxal 5'-Phosphate At 2.0 A Resolution Length = 218

Iteration: 1
 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/212 (38%), Positives = 116/212 (54%), Gaps = 15/212 (7%)
Query: 23  LLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFV 82
           L  +D+  +P  LFE W  +A     + +  AM +AT  ++G P  R+VLLK Y + G V
Sbjct: 22  LRRRDLPADPLTLFERWLSQACEAK-LADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMV 80
Query: 83  FFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIG 142
           F+TN  SRK +++  NP+ SL F W  L+R V + G  E+ S  E   YF SRP  S+IG
Sbjct: 81  FYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIG 140
Query: 143 AIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVH 202
           A  S QS    +R  +     EL+QK+++G+ VP P  WGG+ V  + IEFWQG   R+H
Sbjct: 141 AWVSKQSSRISARGILESKFLELKQKFQQGE-VPLPSFWGGFRVSLEQIEFWQGGEHRLH 199
Query: 203 DRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           DR +++R               D W  +RL P
Sbjct: 200 DRFLYQRE-------------NDAWKIDRLAP 218

>pdb|1G76|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine 5'-Phosphate Oxidase Complexed With Pyridoxal 5'-Phosphate At 2.0 A Resolution Length = 218

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 244 HLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPC 303
           H    NP+ SL F W  L+R V + G  E+ S  E   YF SRP  S+IGA  S QS   
Sbjct: 91  HQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRI 150
Query: 304 ESRDQMSKITEELRQKYKEGDYVPRP 329
            +R  +     EL+QK+++G+ VP P
Sbjct: 151 SARGILESKFLELKQKFQQGE-VPLP 175

>pdb|1G77|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine 5`-Phosphate Oxidase Complexed With Pyridoxal 5'-Phosphate At 2.0 A Resolution Length = 218

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/212 (38%), Positives = 115/212 (54%), Gaps = 15/212 (7%)
Query: 23  LLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFV 82
           L  +D+  +P  LFE W  +A     + +  A  +AT  ++G P  R+VLLK Y + G V
Sbjct: 22  LRRRDLPADPLTLFERWLSQACEAK-LADPTAXVVATVDEHGQPYQRIVLLKHYDEKGXV 80
Query: 83  FFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIG 142
           F+TN  SRK +++  NP+ SL F W  L+R V + G  E+ S  E   YF SRP  S+IG
Sbjct: 81  FYTNLGSRKAHQIENNPRVSLLFPWHTLERQVXVIGKAERLSTLEVXKYFHSRPRDSQIG 140
Query: 143 AIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVH 202
           A  S QS    +R  +     EL+QK+++G+ VP P  WGG+ V  + IEFWQG   R+H
Sbjct: 141 AWVSKQSSRISARGILESKFLELKQKFQQGE-VPLPSFWGGFRVSLEQIEFWQGGEHRLH 199
Query: 203 DRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           DR +++R               D W  +RL P
Sbjct: 200 DRFLYQRE-------------NDAWKIDRLAP 218

>pdb|1G77|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine 5`-Phosphate Oxidase Complexed With Pyridoxal 5'-Phosphate At 2.0 A Resolution Length = 218

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 239 GIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASD 298
           G +  H    NP+ SL F W  L+R V + G  E+ S  E   YF SRP  S+IGA  S 
Sbjct: 86  GSRKAHQIENNPRVSLLFPWHTLERQVXVIGKAERLSTLEVXKYFHSRPRDSQIGAWVSK 145
Query: 299 QSRPCESRDQMSKITEELRQKYKEGDYVPRP 329
           QS    +R  +     EL+QK+++G+ VP P
Sbjct: 146 QSSRISARGILESKFLELKQKFQQGE-VPLP 175

>pdb|1DNL|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine 5'-Phosphate Oxidase Complexed With Fmn At 1.8 Angstrom Resolution Length = 199

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/212 (38%), Positives = 115/212 (54%), Gaps = 15/212 (7%)
Query: 23  LLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFV 82
           L  +D+  +P  LFE W  +A     + +  A  +AT  ++G P  R+VLLK Y + G V
Sbjct: 3   LRRRDLPADPLTLFERWLSQACEAK-LADPTAXVVATVDEHGQPYQRIVLLKHYDEKGXV 61
Query: 83  FFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIG 142
           F+TN  SRK +++  NP+ SL F W  L+R V + G  E+ S  E   YF SRP  S+IG
Sbjct: 62  FYTNLGSRKAHQIENNPRVSLLFPWHTLERQVXVIGKAERLSTLEVXKYFHSRPRDSQIG 121
Query: 143 AIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVH 202
           A  S QS    +R  +     EL+QK+++G+ VP P  WGG+ V  + IEFWQG   R+H
Sbjct: 122 AWVSKQSSRISARGILESKFLELKQKFQQGE-VPLPSFWGGFRVSLEQIEFWQGGEHRLH 180
Query: 203 DRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           DR +++R               D W  +RL P
Sbjct: 181 DRFLYQRE-------------NDAWKIDRLAP 199

>pdb|1DNL|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine 5'-Phosphate Oxidase Complexed With Fmn At 1.8 Angstrom Resolution Length = 199

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 244 HLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPC 303
           H    NP+ SL F W  L+R V + G  E+ S  E   YF SRP  S+IGA  S QS   
Sbjct: 72  HQIENNPRVSLLFPWHTLERQVXVIGKAERLSTLEVXKYFHSRPRDSQIGAWVSKQSSRI 131
Query: 304 ESRDQMSKITEELRQKYKEGDYVPRP 329
            +R  +     EL+QK+++G+ VP P
Sbjct: 132 SARGILESKFLELKQKFQQGE-VPLP 156

>pdb|2A2J|A Chain A, Crystal Structure Of A Putative Pyridoxine 5'-Phosphate Oxidase (Rv2607) From Mycobacterium Tuberculosis Length = 246

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/173 (40%), Positives = 101/173 (58%), Gaps = 2/173 (1%)
Query: 33  FKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKG 92
             L   W ++A    G+ E NAM +AT   +G P  R VL K   ++G  FFT+Y S KG
Sbjct: 62  LTLLRRWLNDAQRA-GVSEPNAMVLAT-VADGKPVTRSVLCKILDESGVAFFTSYTSAKG 119
Query: 93  NELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPC 152
            +LA  P AS  F W  L R   ++G V K S +E   Y+  RP  +++GA AS QSRP 
Sbjct: 120 EQLAVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPV 179
Query: 153 ESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRI 205
            SR Q+     E+ +++ + D +P P  WGGY + P+++EFWQG+ +R+H+RI
Sbjct: 180 GSRAQLDNQLAEVTRRFADQDQIPVPPGWGGYRIAPEIVEFWQGRENRMHNRI 232

>pdb|2A2J|A Chain A, Crystal Structure Of A Putative Pyridoxine 5'-Phosphate Oxidase (Rv2607) From Mycobacterium Tuberculosis Length = 246

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
           A  P AS  F W  L R   ++G V K S +E   Y+  RP  +++GA AS QSRP  SR
Sbjct: 123 AVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVGSR 182
Query: 307 DQMSKITEELRQKYKEGDYVPRP 329
            Q+     E+ +++ + D +P P
Sbjct: 183 AQLDNQLAEVTRRFADQDQIPVP 205

>pdb|1T9M|A Chain A, X-Ray Crystal Structure Of Phzg From Pseudomonas Aeruginosa Length = 214

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 4/178 (2%)
Query: 32  PFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRK 91
           P ++  +W   A    G+ E  A+ +AT    G PS R+V++   G+ G VF T+ +S+K
Sbjct: 29  PMEVLRNWLERARRY-GVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHADSQK 87
Query: 92  GNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRP 151
           G ELA+NP AS   YW    + + + G  E+  D+ +D  + SRPY +   +IAS QS  
Sbjct: 88  GRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASRQS-- 145
Query: 152 CESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKR 209
            E+   +  +  E R+  +    +PRP  +  + +  + +EFW   ++R+H+R+ + R
Sbjct: 146 -ETLADIHALRAEARRLAETDGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDR 202

>pdb|1T9M|A Chain A, X-Ray Crystal Structure Of Phzg From Pseudomonas Aeruginosa Length = 214

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
           A+NP AS   YW    + + + G  E+  D+ +D  + SRPY +   +IAS QS   E+ 
Sbjct: 92  AQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASRQS---ETL 148
Query: 307 DQMSKITEELRQKYKEGDYVPRP 329
             +  +  E R+  +    +PRP
Sbjct: 149 ADIHALRAEARRLAETDGPLPRP 171

>pdb|1TY9|A Chain A, X-Ray Crystal Structure Of Phzg From Pseudomonas Fluorescens Length = 222

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 17/204 (8%)
Query: 31  EPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSR 90
           +P  +  +W   A    GI E  A+ +AT+   G PS R+V++      G VF T+  S+
Sbjct: 36  DPMSVLHNWLERARRV-GIREPRALALATADSQGRPSTRIVVISEISDAGVVFSTHAGSQ 94
Query: 91  KGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSR 150
           KG EL  NP AS   YW    + + + G   +  + ++DD +  RPYA+      S  SR
Sbjct: 95  KGRELLHNPWASGVLYWRETSQQIILNGQAVRLPNAKADDAWLKRPYATH---PMSSVSR 151
Query: 151 PCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRP 210
             E    +  +    RQ  +    +PRP+ +  + +  + +EFW    +R+H+R+ + R 
Sbjct: 152 QSEELQDVQAMRNAARQLAELQGPLPRPEGYCVFELRLESLEFWGNGQERLHERLRYDR- 210
Query: 211 VPGEPLGPHSHEGEDGWYYERLFP 234
                        + GW   RL P
Sbjct: 211 ------------SDTGWNVRRLQP 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	331
1nrg_A	261	Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidore	1e-115
1nrg_A	261	Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidore	9e-37
1ci0_A	228	Protein (PNP oxidase); B6 metabolism, structural g	1e-107
1ci0_A	228	Protein (PNP oxidase); B6 metabolism, structural g	1e-38
1dnl_A	199	Pyridoxine 5'-phosphate oxidase; beta barrel, prot	1e-106
1dnl_A	199	Pyridoxine 5'-phosphate oxidase; beta barrel, prot	8e-38
1ty9_A	222	Phenazine biosynthesis protein PHZG; chorismate, o	1e-104
1ty9_A	222	Phenazine biosynthesis protein PHZG; chorismate, o	1e-35
2a2j_A	246	Pyridoxamine 5'-phosphate oxidase; beta barrel, st	1e-103
2a2j_A	246	Pyridoxamine 5'-phosphate oxidase; beta barrel, st	1e-37
2i51_A	195	Uncharacterized conserved protein of COG5135; pyri	2e-52
2i51_A	195	Uncharacterized conserved protein of COG5135; pyri	6e-14
2hhz_A	150	Pyridoxamine 5'-phosphate oxidase-related; structu	2e-30
2hhz_A	150	Pyridoxamine 5'-phosphate oxidase-related; structu	1e-10
2hq7_A	146	Protein, related to general stress protein 26(GS2	5e-18
2hq7_A	146	Protein, related to general stress protein 26(GS2	9e-04
2i02_A	148	General stress protein of COG3871; pyridoxamine 5'	1e-14
2fhq_A	141	Putative general stress protein; alpha-beta struct	5e-13
2ou5_A	175	Pyridoxamine 5'-phosphate oxidase-related, FMN-BI;	3e-10
2re7_A	134	Uncharacterized protein; general stress protein CO	5e-09
2ig6_A	150	NIMC/NIMA family protein; structural genomics, joi	5e-09
3ec6_A	139	General stress protein 26; alpha-beta structure, s	4e-08
2aq6_A	147	Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos	2e-07
3dmb_A	147	Putative general stress protein 26 with A PNP-OXI	3e-07
3f7e_A	131	Pyridoxamine 5'-phosphate oxidase-related, FMN- bi	6e-07
3u35_A	182	General stress protein; PNP-oxidase like fold, FMN	4e-06
3db0_A	128	LIN2891 protein; putative pyridoxamine 5'-phosphat	1e-05
2htd_A	140	Predicted flavin-nucleotide-binding protein from f	6e-05

>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A* Length = 261

 Score =  332 bits (853), Expect = e-115
 Identities = 122/236 (51%), Positives = 159/236 (67%), Gaps = 4/236 (1%)

Query: 2   AAESTTDLKDKRVPYKSRNEVLLEKDIV-KEPFKLFESWFHEANNTPGIIEANAMFIATS 60
              +  DL   R  Y+   E   E  +   +P K F +WF EA   P I EANAM +AT 
Sbjct: 27  GRSAAMDLGPMRKSYRGDREAFEETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATC 86

Query: 61  TKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHV 120
           T++G PS RM+LLK +GK+GF FFTN+ SRKG EL  NP ASL FYWEPL R VR+EG V
Sbjct: 87  TRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPV 146

Query: 121 EKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH 180
           +K  ++E++ YF SRP +S+IGA+ S QS     R+ + K  EEL Q Y++ + VP+PK 
Sbjct: 147 KKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQE-VPKPKS 205

Query: 181 WGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPG--EPLGPHSHEGEDGWYYERLFP 234
           WGGYV+ P+V+EFWQGQ++R+HDRIVF+R +P    PLGP +H GE+ W YERL P
Sbjct: 206 WGGYVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGDSPLGPMTHRGEEDWLYERLAP 261

>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A* Length = 261

 Score =  131 bits (332), Expect = 9e-37
 Identities = 42/85 (49%), Positives = 57/85 (67%), Gaps = 1/85 (1%)

Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
             NP ASL FYWEPL R VR+EG V+K  ++E++ YF SRP +S+IGA+ S QS     R
Sbjct: 122 DSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDR 181

Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
           + + K  EEL Q Y++ + VP+PK 
Sbjct: 182 EYLRKKNEELEQLYQDQE-VPKPKS 205

>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI, protein structure initiative; HET: FMN; 2.70A {Saccharomyces cerevisiae} SCOP: b.45.1.1 Length = 228

 Score =  311 bits (799), Expect = e-107
 Identities = 77/234 (32%), Positives = 127/234 (54%), Gaps = 15/234 (6%)

Query: 3   AESTTDLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIAT-ST 61
            +       +   Y      L EK +  +P  LF  WF+EA   P      A+  ++   
Sbjct: 8   TQKPIIFAPETYQY--DKFTLNEKQLTDDPIDLFTKWFNEAKEDPRETLPEAITFSSAEL 65

Query: 62  KNGIPSGRMVLLKSYGKNGFVFFTNY-NSRKGNELAENPQASLAFYWEPLKRSVRIEGHV 120
            +G  S R++L K     GF  ++N+  SRK +++A NP A++ F+W+ L+R VR+EG  
Sbjct: 66  PSGRVSSRILLFKELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQRQVRVEGIT 125

Query: 121 EKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH 180
           E  + + S+ YF++RP  SKIGA AS QS   ++R+++ ++T++  +++K+ + +P P +
Sbjct: 126 EHVNRETSERYFKTRPRGSKIGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPDY 185

Query: 181 WGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           WGG  ++P  IEFWQG+  R+HDR V++R               D W   RL P
Sbjct: 186 WGGLRIVPLEIEFWQGRPSRLHDRFVYRRKTEN-----------DPWKVVRLAP 228

>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI, protein structure initiative; HET: FMN; 2.70A {Saccharomyces cerevisiae} SCOP: b.45.1.1 Length = 228

 Score =  135 bits (343), Expect = 1e-38
 Identities = 32/85 (37%), Positives = 59/85 (69%)

Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
           A NP A++ F+W+ L+R VR+EG  E  + + S+ YF++RP  SKIGA AS QS   ++R
Sbjct: 101 ATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSKIGAWASRQSDVIKNR 160

Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
           +++ ++T++  +++K+ + +P P +
Sbjct: 161 EELDELTQKNTERFKDAEDIPCPDY 185

>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex, oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A* 1jnw_A* 1wv4_A* Length = 199

 Score =  308 bits (791), Expect = e-106
 Identities = 82/212 (38%), Positives = 116/212 (54%), Gaps = 15/212 (7%)

Query: 23  LLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFV 82
           L  +D+  +P  LFE W  +A     + +  AM +AT  ++G P  R+VLLK Y + G V
Sbjct: 3   LRRRDLPADPLTLFERWLSQACEA-KLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMV 61

Query: 83  FFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIG 142
           F+TN  SRK +++  NP+ SL F W  L+R V + G  E+ S  E   YF SRP  S+IG
Sbjct: 62  FYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIG 121

Query: 143 AIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVH 202
           A  S QS    +R  +     EL+QK+++G+ VP P  WGG+ V  + IEFWQG   R+H
Sbjct: 122 AWVSKQSSRISARGILESKFLELKQKFQQGE-VPLPSFWGGFRVSLEQIEFWQGGEHRLH 180

Query: 203 DRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           DR +++R               D W  +RL P
Sbjct: 181 DRFLYQR-------------ENDAWKIDRLAP 199

>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex, oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A* 1jnw_A* 1wv4_A* Length = 199

 Score =  132 bits (335), Expect = 8e-38
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
             NP+ SL F W  L+R V + G  E+ S  E   YF SRP  S+IGA  S QS    +R
Sbjct: 75  ENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISAR 134

Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
             +     EL+QK+++G+ VP P  
Sbjct: 135 GILESKFLELKQKFQQGE-VPLPSF 158

>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase; HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1 PDB: 1t9m_A* Length = 222

 Score =  302 bits (776), Expect = e-104
 Identities = 57/236 (24%), Positives = 99/236 (41%), Gaps = 20/236 (8%)

Query: 2   AAESTTDLKDKRVPYKS---RNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIA 58
           + +    L        +          + +  +P  +  +W   A    GI E  A+ +A
Sbjct: 4   SIQGKPLLGKGMSESLTGTLDAPFPEYQTLPADPMSVLHNWLERARRV-GIREPRALALA 62

Query: 59  TSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEG 118
           T+   G PS R+V++      G VF T+  S+KG EL  NP AS   YW    + + + G
Sbjct: 63  TADSQGRPSTRIVVISEISDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETSQQIILNG 122

Query: 119 HVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRP 178
              +  + ++DD +  RPYA+   +  S QS   +    M     +L +       +PRP
Sbjct: 123 QAVRLPNAKADDAWLKRPYATHPMSSVSRQSEELQDVQAMRNAARQLAELQGP---LPRP 179

Query: 179 KHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           + +  + +  + +EFW    +R+H+R+ + R              + GW   RL P
Sbjct: 180 EGYCVFELRLESLEFWGNGQERLHERLRYDR-------------SDTGWNVRRLQP 222

>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase; HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1 PDB: 1t9m_A* Length = 222

 Score =  128 bits (323), Expect = 1e-35
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
             NP AS   YW    + + + G   +  + ++DD +  RPYA+   +  S QS   +  
Sbjct: 100 LHNPWASGVLYWRETSQQIILNGQAVRLPNAKADDAWLKRPYATHPMSSVSRQSEELQDV 159

Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
             M     +L +       +PRP+ 
Sbjct: 160 QAMRNAARQLAELQGP---LPRPEG 181

>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Length = 246

 Score =  303 bits (777), Expect = e-103
 Identities = 80/237 (33%), Positives = 113/237 (47%), Gaps = 22/237 (9%)

Query: 1   MAAESTTDLKDKRVPYKSRNEV---LLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFI 57
           M A     L   R  Y    +    L    +      L   W ++A    G+ E NAM +
Sbjct: 27  MVAIDKDQLARMRGEYGPEKDGCGDLDFDWLDDGWLTLLRRWLNDAQRA-GVSEPNAMVL 85

Query: 58  ATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIE 117
           AT   +G P  R VL K   ++G  FFT+Y S KG +LA  P AS  F W  L R   ++
Sbjct: 86  ATVA-DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLGRQAHVQ 144

Query: 118 GHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPR 177
           G V K S +E   Y+  RP  +++GA AS QSRP  SR Q+     E+ +++ + D +P 
Sbjct: 145 GPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVGSRAQLDNQLAEVTRRFADQDQIPV 204

Query: 178 PKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           P  WGGY + P+++EFWQG+ +R+H+RI                        ERL P
Sbjct: 205 PPGWGGYRIAPEIVEFWQGRENRMHNRIRVAN-----------------GRLERLQP 244

>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Length = 246

 Score =  133 bits (337), Expect = 1e-37
 Identities = 31/85 (36%), Positives = 45/85 (52%)

Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
           A  P AS  F W  L R   ++G V K S +E   Y+  RP  +++GA AS QSRP  SR
Sbjct: 123 AVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVGSR 182

Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
            Q+     E+ +++ + D +P P  
Sbjct: 183 AQLDNQLAEVTRRFADQDQIPVPPG 207

>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme} Length = 195

 Score =  170 bits (432), Expect = 2e-52
 Identities = 33/209 (15%), Positives = 75/209 (35%), Gaps = 20/209 (9%)

Query: 31  EPFKLFESWFHEA-NNTPGIIEANAMFIATSTKNGIPSGRMVLLKSY--GKNGFVFFTNY 87
                +      A +    ++ A  + +AT   NG P+ R ++ + +    N   F T+ 
Sbjct: 2   MSLAPWRGAIAHALHRNRSLVYARYLQLATVQPNGRPANRTLVFRGFLEDTNQLRFITDT 61

Query: 88  NSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASD 147
            S K +++ + P A + +Y+   +   R+ G +   S  +S    Q       +    SD
Sbjct: 62  RSAKADQIQQQPWAEICWYFPNTREQFRMAGDLTLISSDDSHQDLQPAR--IAMWQELSD 119

Query: 148 QSRPCESR--DQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRI 205
            +R           +I E    +    D +    ++   ++ P  ++  + + +   +R 
Sbjct: 120 AARLQFGWPYPGKPRIKESGAFEPSPPDPIEPVPNFCLLLLDPVQVDHLELRGEP-QNRW 178

Query: 206 VFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           ++ R              +  W  E + P
Sbjct: 179 LYHR------------NDQQEWSSEAINP 195

>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme} Length = 195

 Score = 68.7 bits (168), Expect = 6e-14
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 4/87 (4%)

Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
            + P A + +Y+   +   R+ G +   S  +S    Q       +    SD +R     
Sbjct: 70  QQQPWAEICWYFPNTREQFRMAGDLTLISSDDSHQDLQPAR--IAMWQELSDAARLQFGW 127

Query: 307 --DQMSKITEELRQKYKEGDYVPRPKH 331
                 +I E    +    D +    +
Sbjct: 128 PYPGKPRIKESGAFEPSPPDPIEPVPN 154

>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis} Length = 150

 Score =  112 bits (281), Expect = 2e-30
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 51  EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFY--WE 108
           +      AT  + G P  R   + +  + G  F T+  +   ++L  + + ++       
Sbjct: 13  DMKVGVFATLDEYGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAISEEG 72

Query: 109 PLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQS 149
            L + VR+EG      +      F   PY   I    S  +
Sbjct: 73  YLIQVVRVEGTARPVENDYLKTVFADNPYYQHIYKDESSDT 113

>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis} Length = 150

 Score = 58.4 bits (141), Expect = 1e-10
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 7/82 (8%)

Query: 221 HEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFY--WEPLKRSVRIEGHVEKTSDKE 278
              E+G +    F    +   Y  L   + + ++        L + VR+EG      +  
Sbjct: 37  AANEEGIF----FMTSPETHFYDQLMG-DQRVAMTAISEEGYLIQVVRVEGTARPVENDY 91

Query: 279 SDDYFQSRPYASKIGAIASDQS 300
               F   PY   I    S  +
Sbjct: 92  LKTVFADNPYYQHIYKDESSDT 113

>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1 Length = 146

 Score = 78.5 bits (193), Expect = 5e-18
 Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 32/156 (20%)

Query: 49  IIEANAMFIATSTKNGIPSGR-MVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYW 107
           +  +  + + T+ +NG P+ + M+ LK  G   F   TN ++R    L +N +  L F  
Sbjct: 15  VESSKIVMVGTNGENGYPNIKAMMRLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVD 74

Query: 108 EPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQ 167
           +     + + G +E   D+ S +                               T+    
Sbjct: 75  DNKFAGLMLVGTIEILHDRASKEML----------------------------WTDGCEI 106

Query: 168 KYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHD 203
            Y  G   P    +       +   +++   +    
Sbjct: 107 YYPLGIDDPD---YTALCFTAEWGNYYRHLKNITFK 139

>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1 Length = 146

 Score = 38.0 bits (88), Expect = 9e-04
 Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 215 PLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKT 274
            +    H+G   ++                LK +N +  L F  +     + + G +E  
Sbjct: 36  AMMRLKHDGLKKFW----LSTNTSTRMVERLK-KNNKICLYFVDDNKFAGLMLVGTIEIL 90

Query: 275 SDKESDDYF 283
            D+ S +  
Sbjct: 91  HDRASKEML 99

>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1 Length = 148

 Score = 69.6 bits (170), Expect = 1e-14
 Identities = 25/159 (15%), Positives = 41/159 (25%), Gaps = 33/159 (20%)

Query: 51  EANAMFIATSTKNGIPSGR-MVLLKSYGKNGFV-FFTNYNSRKGNELAENPQASLAFYWE 108
             +     T   +G      M           + FFT   S K  E+  + Q +++F   
Sbjct: 21  NIDYGMFTTVDDDGSLHSYPMSKSGDINSEATLWFFTYAGSHKVTEIEHHEQVNVSFSSP 80

Query: 109 PLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQK 168
             +R V I G  +   D+                                     EL+  
Sbjct: 81  EQQRYVSISGTSQLVKDRNKMREL----------------------------WKPELQTW 112

Query: 169 YKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVF 207
           + +G   P         V    + +W   S      I F
Sbjct: 113 FPKGLDEP---DIALLKVNINQVNYWDSTSSFKPQTISF 148

>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Length = 141

 Score = 64.5 bits (157), Expect = 5e-13
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 51  EANAMFIATSTKNGIPSGRMVLLKSYGKNGFV-FFTNYNSRKGNELAENPQASLAFYWEP 109
           +   + +A+  K G P    +   +      +   T  +S K  +   NP+A L F  + 
Sbjct: 19  KCEVVTLASVNKEGYPRPVPMSKIAAEGISTIWMSTGADSLKTIDFLSNPKAGLCFQEK- 77

Query: 110 LKRSVRIEGHVEKTSDKESDDYF 132
              SV + G VE  +D++     
Sbjct: 78  -GDSVALMGEVEVVTDEKLKQEL 99

>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: MSE FMN; 1.60A {Jannaschia SP} Length = 175

 Score = 57.2 bits (137), Expect = 3e-10
 Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 25/161 (15%)

Query: 51  EANAMFIATSTKNGIPSGRMVLLKSY--GKNGFVFFTNYNSRKGNELAENPQASLAFYWE 108
            A    +AT   +G P  R ++L++    +    F T+  S K   +  + + ++  +  
Sbjct: 28  PARHPTLATIGTDG-PDLRTLVLRAASHAEATLEFHTDAASPKVAHIRRDARVAIHIWIP 86

Query: 109 PLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQK 168
                VR +   +        + F   P A+++         P  +              
Sbjct: 87  KASLQVRAKAIAKILPG--DPNLFAQLPEAARMNYQGPVPGTPLPAEPD----------- 133

Query: 169 YKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKR 209
                    P  +   +     I+         H R V+  
Sbjct: 134 -------ATPNRFTRLICHLSEIDVLHL--TTPHQRAVYTA 165

>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus} Length = 134

 Score = 53.0 bits (127), Expect = 5e-09
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 56  FIATSTKNGIPSGR-MVLLKSYGKNG-FVFFTNYNSRKGNELAENPQASLAFYWEPLKRS 113
            I+TS K G      M   +    N    F  +  S    ++ ++ +  L +  +  K  
Sbjct: 22  MISTSNKKGDIHAWPMTTSEVNLDNKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEKNY 81

Query: 114 VRIEGHVEKTSDKE 127
           V I G  E  +DK 
Sbjct: 82  VSISGDAELPTDKA 95

>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum} Length = 150

 Score = 53.4 bits (128), Expect = 5e-09
 Identities = 11/94 (11%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 49  IIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWE 108
            ++   +F   + +   P  R        +      +N   +   ++ +NP+  ++    
Sbjct: 26  FLKECGVFYLATNEGDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGMN- 84

Query: 109 PLKRSVRIEGHVEKTSDKES-DDYFQSRPYASKI 141
              + +R+ G V     +E  +   ++ P    +
Sbjct: 85  KKGQWIRLTGEVANDDRREVKELALEAVPSLKNM 118

>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} Length = 139

 Score = 50.7 bits (121), Expect = 4e-08
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 5/85 (5%)

Query: 51  EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL 110
                 ++T   +   S  M+             T+  S+K  ++  NP   +    E  
Sbjct: 14  GQRTGVLSTVRNDKPHSAFMMFFHEDFV--LYVATDRQSKKITDIENNPNVHVLLGREGK 71

Query: 111 K---RSVRIEGHVEKTSDKESDDYF 132
           K     + +EG      D    + F
Sbjct: 72  KLDEDYIEVEGLASIEEDSTLKNKF 96

>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A* Length = 147

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 1/109 (0%)

Query: 51  EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFF-TNYNSRKGNELAENPQASLAFYWEP 109
             +   +AT   +G P    V      +   +         K   L  +P+AS+    + 
Sbjct: 16  GNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADD 75

Query: 110 LKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQM 158
                  EG  + T    + D        +    IA + S   + R  M
Sbjct: 76  GWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAM 124

>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV} Length = 147

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 49  IIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFV-FFTNYNSRKGNELAENPQASLAFYW 107
           +     + +         +  M         G + FFT+ ++     L +  +   AF  
Sbjct: 16  LKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSS 75

Query: 108 EPLKRSVRIEGHVEKTSDKE 127
           +       I G + + +D  
Sbjct: 76  KGHDLFASISGSLREDTDPA 95

>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis} Length = 131

 Score = 46.7 bits (111), Expect = 6e-07
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 4/103 (3%)

Query: 51  EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFY-WEP 109
                 +AT   +G P    +   ++      F      +K   +  NP  +++    + 
Sbjct: 14  RPLYGHLATVRPDGTPQVNAMW-FAWDGEVLRFTHTTKRQKYRNIKANPAVAMSVIDPDN 72

Query: 110 LKRSVRIEGHVEKTSDKESDDYFQ--SRPYASKIGAIASDQSR 150
             R + + G VE      +  ++   +  Y   +    +D++ 
Sbjct: 73  PYRYLEVRGLVEDIVPDPTGAFYLKLNDRYDGPLTEPPADKAD 115

>3u35_A General stress protein; PNP-oxidase like fold, FMN/FAD, protein BI; HET: PGE; 2.50A {Xanthomonas axonopodis PV} PDB: 3u34_A* Length = 182

 Score = 45.8 bits (108), Expect = 4e-06
 Identities = 17/125 (13%), Positives = 39/125 (31%), Gaps = 14/125 (11%)

Query: 4   ESTTDLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKN 63
            +++ L   R    S  E+   K++ ++ +K  +                 + +      
Sbjct: 3   RASSRLAHPRTTRMSGIEMADTKELQEKFWKALK-------------SDRTVMLGLDGVE 49

Query: 64  GIPSGRMVLLKSYGKNG-FVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEK 122
              +  M         G   FFT+ ++     L +  +   AF  +       I G + +
Sbjct: 50  DGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLRE 109

Query: 123 TSDKE 127
            +D  
Sbjct: 110 DTDPA 114

>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua} Length = 128

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 3/81 (3%)

Query: 51  EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL 110
           +     + +   +  P  R +     G       +     K  E+  NP   +   ++  
Sbjct: 16  QHQVGVLTSVQGDF-PHARYMTFLHDG-LTLYTPSGKELPKTEEVRRNPHVCVLIGYDSP 73

Query: 111 -KRSVRIEGHVEKTSDKESDD 130
               + I G      D+   +
Sbjct: 74  GSAFLEINGLASLEEDESIKE 94

>2htd_A Predicted flavin-nucleotide-binding protein from family structurally related to pyridoxine...; putative pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A {Lactobacillus delbrueckii subsp} Length = 140

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 12/97 (12%), Positives = 30/97 (30%), Gaps = 1/97 (1%)

Query: 49  IIEANAMFIATSTKNGIP-SGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYW 107
           + + N +++AT   +G P  G    +     +   +           +    + +L    
Sbjct: 35  LFKNNLVYLATVDADGNPQVGPKGSMTVLDPSHLQYLEKTKGEAYENIKRGSKVALVAAD 94

Query: 108 EPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAI 144
            P   +VR+    E   D +      ++        +
Sbjct: 95  VPSHTAVRVLATAEVHEDDDYAKKVLAKTEFPNAFVV 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	331
1ci0_A	228	Protein (PNP oxidase); B6 metabolism, structural g	100.0
1nrg_A	261	Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidore	100.0
2a2j_A	246	Pyridoxamine 5'-phosphate oxidase; beta barrel, st	100.0
1dnl_A	199	Pyridoxine 5'-phosphate oxidase; beta barrel, prot	100.0
1ty9_A	222	Phenazine biosynthesis protein PHZG; chorismate, o	100.0
2i51_A	195	Uncharacterized conserved protein of COG5135; pyri	100.0
2ou5_A	175	Pyridoxamine 5'-phosphate oxidase-related, FMN-BI;	100.0
1ci0_A	228	Protein (PNP oxidase); B6 metabolism, structural g	99.96
2a2j_A	246	Pyridoxamine 5'-phosphate oxidase; beta barrel, st	99.96
1nrg_A	261	Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidore	99.94
1dnl_A	199	Pyridoxine 5'-phosphate oxidase; beta barrel, prot	99.93
1ty9_A	222	Phenazine biosynthesis protein PHZG; chorismate, o	99.92
3dmb_A	147	Putative general stress protein 26 with A PNP-OXI	99.88
2qea_A	160	Putative general stress protein 26; structural gen	99.86
2re7_A	134	Uncharacterized protein; general stress protein CO	99.86
2ig6_A	150	NIMC/NIMA family protein; structural genomics, joi	99.84
2hhz_A	150	Pyridoxamine 5'-phosphate oxidase-related; structu	99.83
3u35_A	182	General stress protein; PNP-oxidase like fold, FMN	99.83
2i02_A	148	General stress protein of COG3871; pyridoxamine 5'	99.82
2iab_A	155	Hypothetical protein; NP_828636.1, structural geno	99.82
2hq7_A	146	Protein, related to general stress protein 26(GS2	99.78
2i51_A	195	Uncharacterized conserved protein of COG5135; pyri	99.77
3ec6_A	139	General stress protein 26; alpha-beta structure, s	99.77
3db0_A	128	LIN2891 protein; putative pyridoxamine 5'-phosphat	99.75
2fhq_A	141	Putative general stress protein; alpha-beta struct	99.7
1vl7_A	157	Hypothetical protein ALR5027; structural genomics,	99.68
2ou5_A	175	Pyridoxamine 5'-phosphate oxidase-related, FMN-BI;	99.65
2asf_A	137	Hypothetical protein RV2074; H37RV, structural gen	99.64
3f7e_A	131	Pyridoxamine 5'-phosphate oxidase-related, FMN- bi	99.58
3ba3_A	145	Protein LP_0091, pyridoxamine 5'-phosphate oxidase	99.58
1rfe_A	162	Hypothetical protein RV2991; structural genomics,	99.56
2aq6_A	147	Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos	99.5
2htd_A	140	Predicted flavin-nucleotide-binding protein from f	99.43
2q9k_A	151	Uncharacterized protein; split barrel-like fold, s	99.35
3tgv_A	148	Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}	99.34
2arz_A	247	Hypothetical protein PA4388; hypothetical protein,	99.33
3cp3_A	148	Uncharacterized protein; alpha-beta fold, structur	99.26
2fg9_A	178	5-nitroimidazole antibiotic resistance protein; ST	99.23
3swj_A	251	CHUZ, putative uncharacterized protein; heme oxyge	99.18
2hti_A	185	BH0577 protein; structural genomics, joint center	99.16
1xhn_A	184	CREG, cellular repressor of E1A-stimulated genes;	99.02
2fur_A	209	Hypothetical protein; structural genomics, joint c	99.0
3u5w_A	148	Putative uncharacterized protein; ssgcid, seattle	99.0
2hq9_A	149	MLL6688 protein; structural genomics, joint center	99.0
3gas_A	259	Heme oxygenase; FMN-binding split barrel, oxidored	98.96
2vpa_A	216	NIMA-related protein; cofactor, atomic resolution,	98.93
3dnh_A	258	Uncharacterized protein ATU2129; APC6114, agrobact	98.91
3fkh_A	138	Putative pyridoxamine 5'-phosphate oxidase; NP_601	98.88
2ig6_A	150	NIMC/NIMA family protein; structural genomics, joi	98.87
2qea_A	160	Putative general stress protein 26; structural gen	98.76
3dmb_A	147	Putative general stress protein 26 with A PNP-OXI	98.71
2hhz_A	150	Pyridoxamine 5'-phosphate oxidase-related; structu	98.63
3u35_A	182	General stress protein; PNP-oxidase like fold, FMN	98.43
2iab_A	155	Hypothetical protein; NP_828636.1, structural geno	98.38
3a6r_A	122	FMN-binding protein; electron transport, flavoprot	98.36
2re7_A	134	Uncharacterized protein; general stress protein CO	98.32
2i02_A	148	General stress protein of COG3871; pyridoxamine 5'	98.22
1vl7_A	157	Hypothetical protein ALR5027; structural genomics,	98.15
3in6_A	148	FMN-binding protein; structural genomics, joint ce	98.06
3ec6_A	139	General stress protein 26; alpha-beta structure, s	98.01
3db0_A	128	LIN2891 protein; putative pyridoxamine 5'-phosphat	97.98
2hq7_A	146	Protein, related to general stress protein 26(GS2	97.9
3f7e_A	131	Pyridoxamine 5'-phosphate oxidase-related, FMN- bi	97.73
2htd_A	140	Predicted flavin-nucleotide-binding protein from f	97.71
2ol5_A	202	PAI 2 protein; structural genomics, PSI-2, protein	97.66
2fhq_A	141	Putative general stress protein; alpha-beta struct	97.54
3ba3_A	145	Protein LP_0091, pyridoxamine 5'-phosphate oxidase	97.44
3r5l_A	122	Deazaflavin-dependent nitroreductase; PA-824, spli	97.32
2asf_A	137	Hypothetical protein RV2074; H37RV, structural gen	97.24
2aq6_A	147	Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos	97.12
1rfe_A	162	Hypothetical protein RV2991; structural genomics,	96.85
2arz_A	247	Hypothetical protein PA4388; hypothetical protein,	95.08
3h96_A	143	F420-H2 dependent reductase A; pnpox, flavin, afla	94.93
3r5y_A	147	Putative uncharacterized protein; PA-824, nitroimi	94.89
2q9k_A	151	Uncharacterized protein; split barrel-like fold, s	94.87
2hq9_A	149	MLL6688 protein; structural genomics, joint center	94.76
3r5z_A	145	Putative uncharacterized protein; split barrel-lik	94.73
3tgv_A	148	Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}	94.73
3cp3_A	148	Uncharacterized protein; alpha-beta fold, structur	94.44
3u5w_A	148	Putative uncharacterized protein; ssgcid, seattle	94.12
1xhn_A	184	CREG, cellular repressor of E1A-stimulated genes;	93.97
2fg9_A	178	5-nitroimidazole antibiotic resistance protein; ST	93.33
2hti_A	185	BH0577 protein; structural genomics, joint center	92.44
3dnh_A	258	Uncharacterized protein ATU2129; APC6114, agrobact	91.76
3swj_A	251	CHUZ, putative uncharacterized protein; heme oxyge	91.2
2vpa_A	216	NIMA-related protein; cofactor, atomic resolution,	90.48
2fur_A	209	Hypothetical protein; structural genomics, joint c	89.81
3fkh_A	138	Putative pyridoxamine 5'-phosphate oxidase; NP_601	84.49

>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI, protein structure initiative; HET: FMN; 2.70A {Saccharomyces cerevisiae} SCOP: b.45.1.1

Probab=100.00  E-value=2.2e-52  Score=382.79  Aligned_cols=214  Identities=36%  Similarity=0.748  Sum_probs=190.2

Q ss_pred             CCChhhhccccccCCcCCCcccccCChHHHHHHHHHHhh-cCCCCCCCceEEEEeec-CCCCeeEEEEEEEEeeCCeEEE
Q psy2497           6 TTDLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEAN-NTPGIIEANAMFIATST-KNGIPSGRMVLLKSYGKNGFVF   83 (331)
Q Consensus         6 ~~~~~~~r~~~~~~~~~~~~~~~~~~P~~~f~~Wl~~A~-~~~~~~e~~~~~LATvd-~dG~P~~R~V~~r~~~~~gl~F   83 (331)
                      .++++++|++|..+  .|++.+++.||+.+|..||++|. + .++.++++|+||||| +||.|++|+|++++++++||+|
T Consensus        11 ~~~~~~~r~~y~~~--~l~~~~~~~~P~~~f~~wl~~A~~~-~~~~~~~~~~LATvd~~dG~P~~R~V~lk~~d~~g~~F   87 (228)
T 1ci0_A           11 PIIFAPETYQYDKF--TLNEKQLTDDPIDLFTKWFNEAKED-PRETLPEAITFSSAELPSGRVSSRILLFKELDHRGFTI   87 (228)
T ss_dssp             -------------C--CCCGGGCCSSHHHHHHHHHHHHHHC-SSCSCTTEEEEEEEETTTTEEEEEEEECCEECSSSEEE
T ss_pred             CCChHHHhhhcccC--CCChhhcCCChHHHHHHHHHHHHhh-cCCCCCCEEEEEEeeCCCCCeEEEEEEEEEECCCEEEE
Confidence            56899999999977  69999999999999999999999 6 678899999999999 9999999999999999889999


Q ss_pred             EecCC-CcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHH
Q psy2497          84 FTNYN-SRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKIT  162 (331)
Q Consensus        84 ~T~~~-S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~  162 (331)
                      ||+.+ |+|++||++||+|+|||+|+...+||||+|+|++++++++++||.++|+++|+++|+|+||++|.+++.|++++
T Consensus        88 ~Tn~~~S~K~~eL~~NP~val~f~~~~~~rqVrI~G~ae~v~~~~~~~yf~~rp~~s~i~awas~qs~~i~~r~~l~~~~  167 (228)
T 1ci0_A           88 YSNWGTSRKAHDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSKIGAWASRQSDVIKNREELDELT  167 (228)
T ss_dssp             EEECSSSHHHHHHHHCCEEEEEEEETTTTEEEEEEEEEEECCHHHHHHHHHHSCHHHHHHHHHCCTTCEESCHHHHHHHH
T ss_pred             EeCCCCCcchHHHhhCCeEEEEEEeCCCCEEEEEEEEEEEcCchhhHHHHHhCCHHHhhceeeCCCCcccCCHHHHHHHH
Confidence            99999 99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcC-CCCceEeeecC
Q psy2497         163 EELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEG-EDGWYYERLFP  234 (331)
Q Consensus       163 ~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~-~~gw~f~tl~p  234 (331)
                      +++.++|++++.+|+|++|+||+|+|++|||||++.+++|+|++|.+            .. +++|...+++|
T Consensus       168 ~~~~~~f~~~~~~p~p~~w~g~rv~P~~iEfWq~~~~rlHdR~~y~r------------~~~~~~W~~~rL~P  228 (228)
T 1ci0_A          168 QKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFVYRR------------KTENDPWKVVRLAP  228 (228)
T ss_dssp             HHHHHHTTSCSSCCCCTTEEEEEEEEEEEEEEECCTTSCCEEEEEEC------------SSTTSCCEEEEECC
T ss_pred             HHHHHhhcCCCCCCCCCcEEEEEEEccEEEEeeCCCCCcEEEEEEEe------------cCCCCCeEEEEecC
Confidence            99999997665488999999999999999999999999999999998            11 56899999887

>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A*

Probab=100.00  E-value=3.6e-50  Score=374.19  Aligned_cols=227  Identities=53%  Similarity=0.966  Sum_probs=195.2

Q ss_pred             CCChhhhccccccCCcCCCcccc-cCChHHHHHHHHHHhhcCC-CCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEE
Q psy2497           6 TTDLKDKRVPYKSRNEVLLEKDI-VKEPFKLFESWFHEANNTP-GIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVF   83 (331)
Q Consensus         6 ~~~~~~~r~~~~~~~~~~~~~~~-~~~P~~~f~~Wl~~A~~~~-~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F   83 (331)
                      .+|++++|+.|..+.|.|++.++ +.||+.+|+.||++|.+ . ++.++++|+|||||+||.|++|+|++++++++||+|
T Consensus        31 ~~~~~~~r~~y~~~~~~l~~~~~~~~~P~~~f~~Wl~~A~~-~~~l~e~~~~~LATvd~dG~P~~R~V~lk~~d~~gl~F  109 (261)
T 1nrg_A           31 AMDLGPMRKSYRGDREAFEETHLTSLDPVKQFAAWFEEAVQ-CPDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRF  109 (261)
T ss_dssp             ------------------CCSSCSCSSHHHHHHHHHHHHHH-CTTCSCTTEEEEEEECTTSCEEEEEEECCCEETTEEEE
T ss_pred             cCCHHHHHHhhhcCCCCcCHHHcCCCCHHHHHHHHHHHHHh-hccCCCCcEEEEEEECCCCCeeEEEEEEEEEcCCEEEE
Confidence            56899999999977656999999 89999999999999997 5 788999999999999999999999999999999999


Q ss_pred             EecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHH
Q psy2497          84 FTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITE  163 (331)
Q Consensus        84 ~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~  163 (331)
                      ||+.+|+|++||++||+|+|+|+|+...+||||+|+|++++++++++||.++|+++|+++|+++||++|.+++.++++..
T Consensus       110 ~Tn~~S~K~~eL~~NP~vaL~f~~~~~~rqVrI~G~ae~v~d~e~~~~w~srp~~s~i~awas~Qs~~i~~r~~l~~~~~  189 (261)
T 1nrg_A          110 FTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNE  189 (261)
T ss_dssp             EEETTSHHHHHHHHSCEEEEEEEEGGGTEEEEEEEEEEECCHHHHHHHHHHSCHHHHHHHHHCCTTSCCSCHHHHHHHHH
T ss_pred             EECCCChhHHHHhhCCeEEEEEEeCCCCEEEEEEEEEEEecCcchHHHHhcCChhhhhhhhcCCCCCccCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceEEEeccC-C-CCCCCCCCCcCCCCceEeeecC
Q psy2497         164 ELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPV-P-GEPLGPHSHEGEDGWYYERLFP  234 (331)
Q Consensus       164 ~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~-~-~~~~~~~~~~~~~gw~f~tl~p  234 (331)
                      ++.++|++++ +|+|++|+||+|+|++|||||+..+++|+|++|.+.. . .+.+|.+.+..+++|...+++|
T Consensus       190 ~~~~~f~~~~-vp~p~~w~g~rv~P~~vEfwq~~~~rlHdR~~y~r~~~~~~~~~~~~~~~~~~~W~~~rL~P  261 (261)
T 1nrg_A          190 ELEQLYQDQE-VPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGDSPLGPMTHRGEEDWLYERLAP  261 (261)
T ss_dssp             HHHHHTTTSC-CCCCTTEEEEEECCSEEEEEECCTTSCCEEEEEEECSSTTSCCCCTTCEECSTTEEEEECCC
T ss_pred             HHHhhcccCC-CCCCCcEEEEEEEccEEEEEECCCCCCeEEEEEEECCccccccccccccCCCCCeEEEEccC
Confidence            9999998765 8999999999999999999999999999999999832 1 2266777777677899999987

>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1

Probab=100.00  E-value=3.3e-50  Score=371.14  Aligned_cols=200  Identities=37%  Similarity=0.655  Sum_probs=179.7

Q ss_pred             ChhhhccccccCC---cCCCcccccCChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEE
Q psy2497           8 DLKDKRVPYKSRN---EVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFF   84 (331)
Q Consensus         8 ~~~~~r~~~~~~~---~~~~~~~~~~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~   84 (331)
                      |++++|++|....   ..|++.+++.||+.+|..||++|++ .++.++++|+||||| +|.|++|+|++++++++|||||
T Consensus        34 ~~~~~r~~y~~~~~~~~~l~~~~~~~~P~~~f~~Wl~~A~~-~~~~e~~~~~LATvd-dG~P~~R~Vllk~~d~~gl~F~  111 (246)
T 2a2j_A           34 QLARMRGEYGPEKDGCGDLDFDWLDDGWLTLLRRWLNDAQR-AGVSEPNAMVLATVA-DGKPVTRSVLCKILDESGVAFF  111 (246)
T ss_dssp             ----------CTTTSCCCCCGGGGTTHHHHHHHHHHHHHHH-TTCSSTTEEEEEEEE-TTEEEEEEEEEEEEETTEEEEE
T ss_pred             cHHHHHHhhhccccccCCcChhhcCCCHHHHHHHHHHHHHh-ccCCCCceEEEEEcC-CCceEEEEEEEEEEcCCEEEEE
Confidence            7999999998711   3689999999999999999999997 688899999999999 9999999999999998899999


Q ss_pred             ecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHH
Q psy2497          85 TNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEE  164 (331)
Q Consensus        85 T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~  164 (331)
                      |+.+|+|++||++||+|+|||+|+...+||||+|+|++++++++++||.++|+++|+++|+|+||++|.+++.|+++++.
T Consensus       112 Tn~~S~K~~eL~~NP~vaL~f~~~~~~rqVrI~G~ae~v~~~es~~yf~srp~~sqi~awas~QS~~i~~r~~L~~~~~~  191 (246)
T 2a2j_A          112 TSYTSAKGEQLAVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVGSRAQLDNQLAE  191 (246)
T ss_dssp             EETTSHHHHHHHHSCEEEEEEEEGGGTEEEEEEEEEEECCHHHHHHHHHHSCHHHHHHHHHSCTTCCCCCSHHHHHHHHH
T ss_pred             EcCCChhhHHHhhCCeEEEEEEeCCCCEEEEEEEEEEEeccHhHHHHHHhCCHhhhceEEeCCCCcccCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceEEEec
Q psy2497         165 LRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKR  209 (331)
Q Consensus       165 ~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f~k  209 (331)
                      +.++|++++.+|+|++|+||+|+|++|||||++.+++|+|++|.+
T Consensus       192 ~~~~f~~~~~vp~pp~w~g~rv~P~~iEfWqg~~~rlHdR~~y~r  236 (246)
T 2a2j_A          192 VTRRFADQDQIPVPPGWGGYRIAPEIVEFWQGRENRMHNRIRVAN  236 (246)
T ss_dssp             HHHHHTTCSSCCCCTTEEEEEECCSEEEEEECCTTSCCEEEEEET
T ss_pred             HHHhcccCCCCCCCCcEEEEEEEcCEEEEccCCCCCCeEEEEEEC
Confidence            888897662389999999999999999999999999999999974

>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex, oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A* 1jnw_A* 1wv4_A*

Probab=100.00  E-value=1e-47  Score=345.27  Aligned_cols=198  Identities=41%  Similarity=0.773  Sum_probs=187.7

Q ss_pred             CCCcccccCChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcE
Q psy2497          22 VLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQA  101 (331)
Q Consensus        22 ~~~~~~~~~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~v  101 (331)
                      .|++.+++.||+.+|+.||++|.+ .++.++++|+|||||+||.|++|+|+++.++++||+|||+.+|+|++||++||+|
T Consensus         2 ~~~~~~~~~~p~~~f~~wl~~a~~-~~~~~~~~~~LATv~~dG~P~~R~v~~~~~d~~gl~F~T~~~S~K~~~L~~np~v   80 (199)
T 1dnl_A            2 GLRRRDLPADPLTLFERWLSQACE-AKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRV   80 (199)
T ss_dssp             CCCGGGCCSSHHHHHHHHHHHHHH-TTCSCTTEEEEEEECTTSCEEEEEEECCEEETTEEEEEEETTSHHHHHHHHCCEE
T ss_pred             CCChhhcCCChHHHHHHHHHHHHH-cCcCCCcEEEEEEECCCCCEEEEEEEEEEEcCCEEEEEECCCCHHHHHHhhCCeE
Confidence            377889999999999999999997 6888999999999999999999999999999889999999999999999999999


Q ss_pred             EEEEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCce
Q psy2497         102 SLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHW  181 (331)
Q Consensus       102 al~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~  181 (331)
                      +|||+|+...+||+|+|+|++++++++++||.++|+++|+++|+|+||++|.+++.|+++...+.++|++++ +|+|++|
T Consensus        81 ~l~f~~~~~~~qvri~G~a~~v~d~~~~~~w~~~p~~s~~~aw~s~qs~~i~~r~~l~~~~~~~~~~~~~~~-~p~p~~~  159 (199)
T 1dnl_A           81 SLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGE-VPLPSFW  159 (199)
T ss_dssp             EEEECCGGGTEEEEEEEEEEECCHHHHHHHHTTSCHHHHHHHHHCCTTSCCSCTHHHHHHHHHHHHHSTTSS-CCCCTTE
T ss_pred             EEEEEcCCCCEEEEEEEEEEEeCCccHHHHHHhCChhhhcccccCCCCcccCCHHHHHHHHHHHHhhccCCC-CCCCCce
Confidence            999999999999999999999999999999999999999999999999999999999999999999997665 8899999


Q ss_pred             EEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497         182 GGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP  234 (331)
Q Consensus       182 ~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p  234 (331)
                      +||+|+|++||||+++.+++|+|++|.+             ++++|...+++|
T Consensus       160 ~~~~v~p~~vefw~~~~~rlh~R~~y~~-------------~~~~W~~~~l~P  199 (199)
T 1dnl_A          160 GGFRVSLEQIEFWQGGEHRLHDRFLYQR-------------ENDAWKIDRLAP  199 (199)
T ss_dssp             EEEEECCSEEEEEECCGGGCCEEEEEEE-------------CSSSEEEEECCC
T ss_pred             EEEEEECCEEEEEecCCCCCceEEEEEE-------------CCCCEEEEEecC
Confidence            9999999999999999999999999998             456799998876

>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase; HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1 PDB: 1t9m_A*

Probab=100.00  E-value=1.6e-46  Score=342.86  Aligned_cols=212  Identities=27%  Similarity=0.511  Sum_probs=184.7

Q ss_pred             cCCCChhhhccccccCCcCCCcccccCChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEE
Q psy2497           4 ESTTDLKDKRVPYKSRNEVLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVF   83 (331)
Q Consensus         4 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F   83 (331)
                      |..|++..+|..|..+.|.  ..+++.||+.+|+.||++|.+ .++.++++|+|||||+||.|++|+|+++++++++|+|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~--~~~~~~~P~~~f~~Wl~~A~~-~~~~~~~~~~LATvd~dG~P~~R~v~l~~~d~~gl~F   87 (222)
T 1ty9_A           11 LGKGMSESLTGTLDAPFPE--YQTLPADPMSVLHNWLERARR-VGIREPRALALATADSQGRPSTRIVVISEISDAGVVF   87 (222)
T ss_dssp             ----------CCSCCCCTH--HHHCCSCHHHHHHHHHHHHHH-HTCSSTTEEEEEEECTTCCEEEEEEECCEECSSEEEE
T ss_pred             ccccchhhhccccccCCCC--hhccCCCHHHHHHHHHHHHHH-hccCCCCEEEEEEECCCCCEEEEEEEEEEEcCCEEEE
Confidence            3456677788888777432  578899999999999999996 6888999999999999999999999999999999999


Q ss_pred             EecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHH
Q psy2497          84 FTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITE  163 (331)
Q Consensus        84 ~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~  163 (331)
                      ||+.+|+|++||++||+|+|||+|+...+||||+|+|++++++++++||+++|+++|+.+|+|+||.++.++..++....
T Consensus        88 ~T~~~S~K~~eL~~nP~val~f~~~~~~rqvrI~G~ae~v~~~~~~~~w~~rp~~s~i~A~as~qs~~~~~~~~l~~~~~  167 (222)
T 1ty9_A           88 STHAGSQKGRELLHNPWASGVLYWRETSQQIILNGQAVRLPNAKADDAWLKRPYATHPMSSVSRQSEELQDVQAMRNAAR  167 (222)
T ss_dssp             EEETTSHHHHHHHHCCEEEEEEEETTTTEEEEEEEEEEECCHHHHHHHHHTSCGGGHHHHHHCCTTSBCCCHHHHHHHHH
T ss_pred             EECCCCcchHHHhhCCeEEEEEEcCCCCeEEEEEEEEEEEccHHhHHHHHhCccccccceeeccCCCcCCChHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987665


Q ss_pred             HHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497         164 ELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP  234 (331)
Q Consensus       164 ~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p  234 (331)
                      .+.++  +++ +|+|++|+||+|+|++||||++..+++|+|++|.+             ++++|...+++|
T Consensus       168 ~~~~~--~~~-~p~p~~w~~~rv~P~~vEfwq~~~~rlHdR~~y~~-------------~~~~W~~~rL~P  222 (222)
T 1ty9_A          168 QLAEL--QGP-LPRPEGYCVFELRLESLEFWGNGQERLHERLRYDR-------------SDTGWNVRRLQP  222 (222)
T ss_dssp             HHHTS--CSC-CCCCTTEEEEEEEEEEEEEEEEEETTEEEEEEEEE-------------ETTEEEEEEECC
T ss_pred             HHhhc--cCC-CCCCCCEEEEEEEeeEEEEEECCCCCCcEEEEEEE-------------CCCCEEEEEecC
Confidence            55433  233 78999999999999999999999999999999998             456799998886

>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme}

Probab=100.00  E-value=3e-39  Score=289.31  Aligned_cols=181  Identities=15%  Similarity=0.291  Sum_probs=157.1

Q ss_pred             ChHHHHHHHHHHhhcCCCCCCCc--eEEEEeecCCCCeeEEEEEEEEeeCC--eEEEEecCCCcchhhhhcCCcEEEEEE
Q psy2497          31 EPFKLFESWFHEANNTPGIIEAN--AMFIATSTKNGIPSGRMVLLKSYGKN--GFVFFTNYNSRKGNELAENPQASLAFY  106 (331)
Q Consensus        31 ~P~~~f~~Wl~~A~~~~~~~e~~--~~~LATvd~dG~P~~R~V~~r~~~~~--gl~F~T~~~S~K~~eL~~np~val~f~  106 (331)
                      .|+..|+.||++|++ .+.++|+  +|+|||||+||.|++|+|++++++++  +|+|||+.+|+|++||++||+|+|+|+
T Consensus         2 ~~~~~w~~wl~~a~~-~~~~~p~~~~~~LATv~~dG~P~~R~v~~~~~d~~~~~l~F~T~~~S~K~~~l~~np~v~l~f~   80 (195)
T 2i51_A            2 MSLAPWRGAIAHALH-RNRSLVYARYLQLATVQPNGRPANRTLVFRGFLEDTNQLRFITDTRSAKADQIQQQPWAEICWY   80 (195)
T ss_dssp             CCCCTTHHHHHHHHH-HTTTCGGGGEEEEEEECTTSCEEEEEEECCCBCTTSSCEEEEEETTSHHHHHHHHCCEEEEEEE
T ss_pred             CchhHHHHHHHHHHH-hCCCCCCCCEEEEEEECCCCCeeEEEEEEEEEcCCCCeEEEEEcCCccHHHHHhhCCeEEEEEE
Confidence            356689999999996 5666765  89999999999999999999999886  899999999999999999999999999


Q ss_pred             eCCCCeEEEEEEEEEecCCcchh--------HHHhcCCccccc-eeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCC
Q psy2497         107 WEPLKRSVRIEGHVEKTSDKESD--------DYFQSRPYASKI-GAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPR  177 (331)
Q Consensus       107 ~~~~~~qvri~G~a~~~~~~~~~--------~~~~~~p~~~~~-~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~  177 (331)
                      |+...+||||+|+|+++++++.+        .||.++|..+++ ++|+++ |+++.+..      .++.++|+ ++ +|+
T Consensus        81 ~~~~~~qvri~G~a~~v~~~~~~~~~~~~r~~~w~~~~~~sr~~~~~~sp-g~~~~~~~------~~~~~~~~-~~-~p~  151 (195)
T 2i51_A           81 FPNTREQFRMAGDLTLISSDDSHQDLQPARIAMWQELSDAARLQFGWPYP-GKPRIKES------GAFEPSPP-DP-IEP  151 (195)
T ss_dssp             ETTTTEEEEEEEEEEEECSSSTTGGGHHHHHHHHHHSCHHHHHGGGSCCT-TSBCCCCG------GGGCCCCC-CS-SSC
T ss_pred             eCCCCEEEEEEEEEEEEChHHhhhhhHHHHHHHHHhCChhhhhhcccCCC-CCCccchh------HHhhhhcc-CC-CCC
Confidence            99999999999999999998886        999999999998 589877 58876443      12333443 33 789


Q ss_pred             CCceEEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497         178 PKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP  234 (331)
Q Consensus       178 P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p  234 (331)
                      |++|+||+|.|++|||||+..++ |+|++|.+            .++++|...+++|
T Consensus       152 p~~w~~~~v~P~~iefwq~~~~r-h~R~~y~~------------~~~~~W~~~rl~P  195 (195)
T 2i51_A          152 VPNFCLLLLDPVQVDHLELRGEP-QNRWLYHR------------NDQQEWSSEAINP  195 (195)
T ss_dssp             CTTEEEEEEEEEEEEEEESSSSS-CEEEEEEE------------CTTSCEEEEEBCC
T ss_pred             CCceEEEEEEccEEEEEecCCCC-ceEEEEEE------------CCCCCEEEEEeCC
Confidence            99999999999999999999998 99999998            2356799998876

>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: MSE FMN; 1.60A {Jannaschia SP}

Probab=100.00  E-value=8e-33  Score=243.64  Aligned_cols=148  Identities=16%  Similarity=0.249  Sum_probs=133.0

Q ss_pred             CCCCC-ceEEEEeecCCCCeeEEEEEEEEeeC--CeEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecC
Q psy2497          48 GIIEA-NAMFIATSTKNGIPSGRMVLLKSYGK--NGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTS  124 (331)
Q Consensus        48 ~~~e~-~~~~LATvd~dG~P~~R~V~~r~~~~--~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~  124 (331)
                      +..++ ++|+|||+|+|| |++|+|+++++++  ++|+|+|+.+|+|++||++||+|+|+|+|+...+||||+|+|++++
T Consensus        24 ~~~~p~~~~~LATv~~dG-P~~R~v~~~~~~~~~~~l~F~T~~~s~K~~~l~~nP~v~l~f~~~~~~~qvri~G~a~~~~  102 (175)
T 2ou5_A           24 DRHHPARHPTLATIGTDG-PDLRTLVLRAASHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKASLQVRAKAIAKILP  102 (175)
T ss_dssp             CTTSGGGSCEEEEEETTE-EEEEECCCCEEETTTTEEEEEEETTSHHHHHHHHCCEEEEEEEEGGGTEEEEEEEEEEEEE
T ss_pred             cCCCCcceEEEEEeCCCC-CceeEEEEEEEEcCCCEEEEEECCCChHHHHHhhCCcEEEEEEeCCCCEEEEEEEEEEEeC
Confidence            45566 999999999999 9999999999974  5899999999999999999999999999999999999999999998


Q ss_pred             CcchhHHHhcCCccccceeecC-CCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccc
Q psy2497         125 DKESDDYFQSRPYASKIGAIAS-DQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHD  203 (331)
Q Consensus       125 ~~~~~~~~~~~p~~~~~~~~~s-~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~  203 (331)
                      ++  ++||+++|..+++. |.+ .||.++.+  .               . +|.|++|+||+|.|++|||||++.+  |+
T Consensus       103 d~--~~~w~~~~~~~~~~-~~~~~~~~~~~~--~---------------l-~~~p~~~~~~~v~p~~vefw~~~~~--h~  159 (175)
T 2ou5_A          103 GD--PNLFAQLPEAARMN-YQGPVPGTPLPA--E---------------P-DATPNRFTRLICHLSEIDVLHLTTP--HQ  159 (175)
T ss_dssp             CC--HHHHHHSCHHHHGG-GSSSCTTCBSSC--C---------------C-CCCSCCEEEEEEEEEEEEEEECCSS--CE
T ss_pred             cH--HHHHHHCCHhHHhc-ccCCCCCCcccc--c---------------c-CCCCCcEEEEEEEeeEEEEEeCCCC--ce
Confidence            87  89999999999987 676 58999876  1               1 5688999999999999999999987  99


Q ss_pred             eEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497         204 RIVFKRPVPGEPLGPHSHEGEDGWYYERLFP  234 (331)
Q Consensus       204 R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p  234 (331)
                      |++|.+             ++  |...+++|
T Consensus       160 R~~y~~-------------~~--W~~~~l~P  175 (175)
T 2ou5_A          160 RAVYTA-------------PD--WRGIWVSP  175 (175)
T ss_dssp             EEEEET-------------TT--CCCEEECC
T ss_pred             EEEEEc-------------CC--ceEEEecC
Confidence            999997             23  98888876

>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI, protein structure initiative; HET: FMN; 2.70A {Saccharomyces cerevisiae} SCOP: b.45.1.1

Probab=99.96  E-value=4.1e-30  Score=235.18  Aligned_cols=119  Identities=34%  Similarity=0.606  Sum_probs=110.4

Q ss_pred             CCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC-CCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcC
Q psy2497         197 QSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP-QPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTS  275 (331)
Q Consensus       197 ~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p-S~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~  275 (331)
                      ..|++|.|.++.+           +++++|++|+|++. |+|+     ++|++||+|||+|||+.+.|||||+|.|++++
T Consensus        66 ~dG~P~~R~V~lk-----------~~d~~g~~F~Tn~~~S~K~-----~eL~~NP~val~f~~~~~~rqVrI~G~ae~v~  129 (228)
T 1ci0_A           66 PSGRVSSRILLFK-----------ELDHRGFTIYSNWGTSRKA-----HDIATNPNAAIVFFWKDLQRQVRVEGITEHVN  129 (228)
T ss_dssp             TTTEEEEEEEECC-----------EECSSSEEEEEECSSSHHH-----HHHHHCCEEEEEEEETTTTEEEEEEEEEEECC
T ss_pred             CCCCeEEEEEEEE-----------EECCCEEEEEeCCCCCcch-----HHHhhCCeEEEEEEeCCCCEEEEEEEEEEEcC
Confidence            3578999999987           45678999999999 9996     37999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497         276 DKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH  331 (331)
Q Consensus       276 ~~es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~  331 (331)
                      ++++++||++||++||||||+|+||++|.||+.|+++++++.++|+++++||+|++
T Consensus       130 ~~~~~~yf~~rp~~s~i~awas~qs~~i~~r~~l~~~~~~~~~~f~~~~~~p~p~~  185 (228)
T 1ci0_A          130 RETSERYFKTRPRGSKIGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPDY  185 (228)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHCCTTCEESCHHHHHHHHHHHHHHTTSCSSCCCCTT
T ss_pred             chhhHHHHHhCCHHHhhceeeCCCCcccCCHHHHHHHHHHHHHhhcCCCCCCCCCc
Confidence            99999999999999999999999999999999999999999999976544999985

>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1

Probab=99.96  E-value=2.1e-29  Score=232.30  Aligned_cols=118  Identities=31%  Similarity=0.463  Sum_probs=109.3

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCHH
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDK  277 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~~  277 (331)
                      .|+|+.|.+..+           +++++|++|+|++.|+|+     ++|++||+|||+|||+.+.|||||+|.|++++++
T Consensus        90 dG~P~~R~Vllk-----------~~d~~gl~F~Tn~~S~K~-----~eL~~NP~vaL~f~~~~~~rqVrI~G~ae~v~~~  153 (246)
T 2a2j_A           90 DGKPVTRSVLCK-----------ILDESGVAFFTSYTSAKG-----EQLAVTPYASATFPWYQLGRQAHVQGPVSKVSTE  153 (246)
T ss_dssp             TTEEEEEEEEEE-----------EEETTEEEEEEETTSHHH-----HHHHHSCEEEEEEEEGGGTEEEEEEEEEEECCHH
T ss_pred             CCceEEEEEEEE-----------EEcCCEEEEEEcCCChhh-----HHHhhCCeEEEEEEeCCCCEEEEEEEEEEEeccH
Confidence            467999999987           466789999999999996     3799999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497         278 ESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH  331 (331)
Q Consensus       278 es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~  331 (331)
                      ++++||++||++|||+||+|+||++|.||+.|+++++++.++|+++++||+|++
T Consensus       154 es~~yf~srp~~sqi~awas~QS~~i~~r~~L~~~~~~~~~~f~~~~~vp~pp~  207 (246)
T 2a2j_A          154 EIFTYWSMRPRGAQLGAWASQQSRPVGSRAQLDNQLAEVTRRFADQDQIPVPPG  207 (246)
T ss_dssp             HHHHHHHHSCHHHHHHHHHSCTTCCCCCSHHHHHHHHHHHHHHTTCSSCCCCTT
T ss_pred             hHHHHHHhCCHhhhceEEeCCCCcccCCHHHHHHHHHHHHHhcccCCCCCCCCc
Confidence            999999999999999999999999999999999999999999975435999985

>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A*

Probab=99.94  E-value=3.7e-27  Score=219.29  Aligned_cols=117  Identities=41%  Similarity=0.687  Sum_probs=109.2

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCHH
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDK  277 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~~  277 (331)
                      .|+|+.|.+..+           ..+++|++|+|++.|+|+     ++|++||+|||+|+|+.+.|||||+|.|++++++
T Consensus        89 dG~P~~R~V~lk-----------~~d~~gl~F~Tn~~S~K~-----~eL~~NP~vaL~f~~~~~~rqVrI~G~ae~v~d~  152 (261)
T 1nrg_A           89 DGKPSARMLLLK-----------GFGKDGFRFFTNFESRKG-----KELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEE  152 (261)
T ss_dssp             TSCEEEEEEECC-----------CEETTEEEEEEETTSHHH-----HHHHHSCEEEEEEEEGGGTEEEEEEEEEEECCHH
T ss_pred             CCCeeEEEEEEE-----------EEcCCEEEEEECCCChhH-----HHHhhCCeEEEEEEeCCCCEEEEEEEEEEEecCc
Confidence            578999999987           456789999999999996     3799999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497         278 ESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH  331 (331)
Q Consensus       278 es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~  331 (331)
                      ++++||++||++|||+||+|+||++|.+|++|++++++++++|+++ +||+|++
T Consensus       153 e~~~~w~srp~~s~i~awas~Qs~~i~~r~~l~~~~~~~~~~f~~~-~vp~p~~  205 (261)
T 1nrg_A          153 EAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQ-EVPKPKS  205 (261)
T ss_dssp             HHHHHHHHSCHHHHHHHHHCCTTSCCSCHHHHHHHHHHHHHHTTTS-CCCCCTT
T ss_pred             chHHHHhcCChhhhhhhhcCCCCCccCCHHHHHHHHHHHHhhcccC-CCCCCCc
Confidence            9999999999999999999999999999999999999999999865 5899875

>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex, oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A* 1jnw_A* 1wv4_A*

Probab=99.93  E-value=1.4e-26  Score=207.63  Aligned_cols=118  Identities=36%  Similarity=0.529  Sum_probs=108.9

Q ss_pred             CCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCH
Q psy2497         197 QSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSD  276 (331)
Q Consensus       197 ~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~  276 (331)
                      ..|+|+.|.+..+           ..+++|++|+|++.|+|+     ++|++||+|||+|+|+.+.|||||+|+|+.+++
T Consensus        41 ~dG~P~~R~v~~~-----------~~d~~gl~F~T~~~S~K~-----~~L~~np~v~l~f~~~~~~~qvri~G~a~~v~d  104 (199)
T 1dnl_A           41 EHGQPYQRIVLLK-----------HYDEKGMVFYTNLGSRKA-----HQIENNPRVSLLFPWHTLERQVMVIGKAERLST  104 (199)
T ss_dssp             TTSCEEEEEEECC-----------EEETTEEEEEEETTSHHH-----HHHHHCCEEEEEECCGGGTEEEEEEEEEEECCH
T ss_pred             CCCCEEEEEEEEE-----------EEcCCEEEEEECCCCHHH-----HHHhhCCeEEEEEEcCCCCEEEEEEEEEEEeCC
Confidence            3578999999886           356678999999999996     379999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497         277 KESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH  331 (331)
Q Consensus       277 ~es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~  331 (331)
                      +++++||++||++|||+||+|+||++|+||++|+++++++.++|+++ ++|+|++
T Consensus       105 ~~~~~~w~~~p~~s~~~aw~s~qs~~i~~r~~l~~~~~~~~~~~~~~-~~p~p~~  158 (199)
T 1dnl_A          105 LEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQG-EVPLPSF  158 (199)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHCCTTSCCSCTHHHHHHHHHHHHHSTTS-SCCCCTT
T ss_pred             ccHHHHHHhCChhhhcccccCCCCcccCCHHHHHHHHHHHHhhccCC-CCCCCCc
Confidence            99999999999999999999999999999999999999999999754 5899875

>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase; HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1 PDB: 1t9m_A*

Probab=99.92  E-value=1.5e-25  Score=204.26  Aligned_cols=115  Identities=23%  Similarity=0.366  Sum_probs=104.7

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCHH
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDK  277 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~~  277 (331)
                      .|+++.|.+..+           ..+++|++|+|++.|+|+     ++|++||+|||+|||+.+.|||||+|+|+.++++
T Consensus        67 dG~P~~R~v~l~-----------~~d~~gl~F~T~~~S~K~-----~eL~~nP~val~f~~~~~~rqvrI~G~ae~v~~~  130 (222)
T 1ty9_A           67 QGRPSTRIVVIS-----------EISDAGVVFSTHAGSQKG-----RELLHNPWASGVLYWRETSQQIILNGQAVRLPNA  130 (222)
T ss_dssp             TCCEEEEEEECC-----------EECSSEEEEEEETTSHHH-----HHHHHCCEEEEEEEETTTTEEEEEEEEEEECCHH
T ss_pred             CCCEEEEEEEEE-----------EEcCCEEEEEECCCCcch-----HHHhhCCeEEEEEEcCCCCeEEEEEEEEEEEccH
Confidence            578999999887           356789999999999996     3799999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497         278 ESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH  331 (331)
Q Consensus       278 es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~  331 (331)
                      ++++||++||++|||+||+|+||.+|++|+.|+++++++.++  + .++|+|++
T Consensus       131 ~~~~~w~~rp~~s~i~A~as~qs~~~~~~~~l~~~~~~~~~~--~-~~~p~p~~  181 (222)
T 1ty9_A          131 KADDAWLKRPYATHPMSSVSRQSEELQDVQAMRNAARQLAEL--Q-GPLPRPEG  181 (222)
T ss_dssp             HHHHHHHTSCGGGHHHHHHCCTTSBCCCHHHHHHHHHHHHTS--C-SCCCCCTT
T ss_pred             HhHHHHHhCccccccceeeccCCCcCCChHHHHHHHHHHhhc--c-CCCCCCCC
Confidence            999999999999999999999999999999999998887765  2 25888875

>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV}

Probab=99.88  E-value=1.6e-22  Score=172.48  Aligned_cols=123  Identities=13%  Similarity=0.148  Sum_probs=97.7

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEE-eeCCe-EEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcch
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKS-YGKNG-FVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKES  128 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~-~~~~g-l~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~  128 (331)
                      +.++++|||+++|| |++|+|.+.. .+++| |||+|+..|+|+++|++||+|+|+|+|+...+||+|+|+|+++++   
T Consensus        18 ~~~~~~LaT~~~d~-~~~~pm~~~~~~d~~g~l~F~T~~~s~K~~~l~~np~v~l~~~~~~~~~~v~v~G~a~~~~d---   93 (147)
T 3dmb_A           18 SDRTVMLGLDGVED-GHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTD---   93 (147)
T ss_dssp             HHCEEEEEETTSSS-CCCEEEEEECSSSSCCCEEEEECTTCTTHHHHTTCEEEEEEEECTTSSEEEEEEEEEEECCC---
T ss_pred             cCCEEEEEEEcCCC-CceEeCccccccCCCceEEEEecCCcHHHHHHhhCCeEEEEEEcCCCCeEEEEEEEEEEecC---
Confidence            56679999999876 8999999963 33345 999999999999999999999999999998899999999998764   


Q ss_pred             hHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHH-HHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceEEE
Q psy2497         129 DDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEE-LRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVF  207 (331)
Q Consensus       129 ~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~-~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f  207 (331)
                                                ++.+++.|.. +..+|+++   +++++|++|+|.|.++|||++..+ ...++.+
T Consensus        94 --------------------------~~~~~~~~~~~~~~~~~~g---~~dp~~~vl~v~p~~~e~W~~~~~-~~~~~~~  143 (147)
T 3dmb_A           94 --------------------------PAVVDRLWNPYVAAWYEGG---KDDPKLALLRLDADHAQIWLNGSS-LLAGIKV  143 (147)
T ss_dssp             --------------------------HHHHHHHCCHHHHHHCTTG---GGCTTCEEEEEEEEEEEEEECCCC-CCCCCCC
T ss_pred             --------------------------HHHHHHHhhHHHHHHccCC---CCCCCEEEEEEEcCEEEEEECCCC-ceeEEEE
Confidence                                      3334444333 34566654   356889999999999999999865 3344433

>2qea_A Putative general stress protein 26; structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.46A {Jannaschia SP}

Probab=99.86  E-value=6.5e-22  Score=170.81  Aligned_cols=125  Identities=11%  Similarity=0.088  Sum_probs=101.3

Q ss_pred             CCCceEEEEeecCCCCeeEEEEEEEEeeCCe--EEEEecCCCcchhhhhcCCc-EEEEEEeCCCCeEEEEEEEEEecCCc
Q psy2497          50 IEANAMFIATSTKNGIPSGRMVLLKSYGKNG--FVFFTNYNSRKGNELAENPQ-ASLAFYWEPLKRSVRIEGHVEKTSDK  126 (331)
Q Consensus        50 ~e~~~~~LATvd~dG~P~~R~V~~r~~~~~g--l~F~T~~~S~K~~eL~~np~-val~f~~~~~~~qvri~G~a~~~~~~  126 (331)
                      .+.++++|||   ||.|++|||.+..++++|  |||+|+..|+|+++|++||+ |+|+|+|+...+||+|+|+|+++++ 
T Consensus        14 ~~~~~~~LaT---dG~P~~rpv~~~~~~~~g~~l~f~t~~~s~K~~~l~~np~~v~l~~~~~~~~~~v~v~G~a~~v~d-   89 (160)
T 2qea_A           14 EDVRSGMLGI---KGQGRLIPMSPQTDDDAPGAIWFITAKGTDLAKGVAAGPQPAQFVVSDDGEGLYADLDGTLERSTD-   89 (160)
T ss_dssp             TTCCCEEEEE---TTSSCCEEECCBCCTTSCSCEEEEEETTSHHHHHTSSSCEEEEEEEEETTTTEEEEEEEEEEEECC-
T ss_pred             hcCCEEEEEe---CCCeeEEEeeeeEecCCCCEEEEEECCCCHHHHHHHhCCceEEEEEECCCCCeEEEEEEEEEEEcC-
Confidence            3678899999   799999999998666555  99999999999999999999 9999999999999999999998654 


Q ss_pred             chhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHH-hhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceE
Q psy2497         127 ESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQ-KYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRI  205 (331)
Q Consensus       127 ~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~-~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~  205 (331)
                                                  ++.+++.|..+.. +|+++   +.+++|++|+|.|+++|||++..+++...+
T Consensus        90 ----------------------------~~~~~~~~~~~~~~~~~~~---~~~p~~~v~~i~p~~~e~w~~~~~~l~~~~  138 (160)
T 2qea_A           90 ----------------------------REALDEFWSFVADAWFDGG---QHDPDVCLLKFTPASGEISITEGGGARFLY  138 (160)
T ss_dssp             ----------------------------HHHHHHSCCHHHHHHCTTC---SSCTTEEEEEEEEEEEEEEEECCSSHHHHH
T ss_pred             ----------------------------HHHHHHHHHHHHHHHccCC---CCCCCEEEEEEECCEEEEEECCCChHHHHH
Confidence                                        4444444444433 44544   367889999999999999999877765545


Q ss_pred             EEec
Q psy2497         206 VFKR  209 (331)
Q Consensus       206 ~f~k  209 (331)
                      .+.+
T Consensus       139 ~~~~  142 (160)
T 2qea_A          139 EIAK  142 (160)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus}

Probab=99.86  E-value=2.2e-21  Score=161.29  Aligned_cols=114  Identities=17%  Similarity=0.271  Sum_probs=93.9

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEee--CCeEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcch
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYG--KNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKES  128 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~--~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~  128 (331)
                      +.++++|||+++||.|++|||.+...+  ++.|||+|+..|+|+++|++||+|+|+|+++...+||+|+|+|+++++   
T Consensus        17 ~~~~~~LaT~~~dG~P~~~pv~~~~~~~~~~~l~f~t~~~s~K~~~l~~np~v~l~~~~~~~~~~v~v~G~a~~~~d---   93 (134)
T 2re7_A           17 DVKFAMISTSNKKGDIHAWPMTTSEVNLDNKEIWFIGDKTSDVVKDIQDDARIGLTYATQDEKNYVSISGDAELPTD---   93 (134)
T ss_dssp             HCSCEEEEEECTTSCEEEEEECCSEEETTTTEEEEEEETTSHHHHHHHHCCEEEEEEECTTSSCEEEEEEEEECCCC---
T ss_pred             cCCEEEEEEEcCCCCEEEEecEeeeecCCCceEEEEECCCCHHHHHHhhCCcEEEEEEcCCCCeEEEEEEEEEEECC---
Confidence            456799999999999999999998776  446999999999999999999999999999988899999999998654   


Q ss_pred             hHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHH-HHhhcCCCCCCCCCceEEEEEeceEEEeeec
Q psy2497         129 DDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEEL-RQKYKEGDYVPRPKHWGGYVVIPKVIEFWQG  196 (331)
Q Consensus       129 ~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~-~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~  196 (331)
                                                .+.+++.|..+ ..+|+++   +.++++++|+|.|++++||++
T Consensus        94 --------------------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~w~~  133 (134)
T 2re7_A           94 --------------------------KAKLDELWSPVYSAFFANG---KEDANIQLIKVVPHGVECWLS  133 (134)
T ss_dssp             --------------------------HHHHHHHCCHHHHHTSTTG---GGCTTEEEEEEEEEEEEEECC
T ss_pred             --------------------------HHHHHHHhhHHHHHHccCC---CCCCCEEEEEEEeCEEEEecC
Confidence                                      33333343332 3345443   245789999999999999986

>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum}

Probab=99.84  E-value=1.5e-20  Score=160.94  Aligned_cols=115  Identities=12%  Similarity=0.133  Sum_probs=98.2

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcc-hh
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKE-SD  129 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~-~~  129 (331)
                      ++.+++|||++ +|.|++|||.+...++++|||+|+.+|+|+++|++||+|+|+|+++. .++|+|+|+|+++++.+ .+
T Consensus        29 ~~~~~~LaTv~-dG~P~~rpv~~~~~~~~~l~f~t~~~s~K~~~l~~np~V~l~~~~~~-~~~v~i~G~a~~v~d~e~~~  106 (150)
T 2ig6_A           29 ECGVFYLATNE-GDQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQMIQNPKVEISGMNKK-GQWIRLTGEVANDDRREVKE  106 (150)
T ss_dssp             HHCSEEEEEEE-TTEEEEEEECCCEEETTEEEEEEETTSHHHHHHHHCCEEEEEEECTT-SCEEEEEEEEEECCCHHHHH
T ss_pred             hCCeEEEEEcc-CCceEEEEeEEEEEcCCEEEEEeCCCcHHHHHHHHCCCEEEEEEcCC-CeEEEEEEEEEEECCHHHHH
Confidence            45679999999 99999999999766777899999999999999999999999999988 79999999999999865 57


Q ss_pred             HHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCC
Q psy2497         130 DYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSD  199 (331)
Q Consensus       130 ~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~  199 (331)
                      ++|..+|...+                           +|  ++   ..+++++|+|.|.+++||+..++
T Consensus       107 ~~~~~~p~~~~---------------------------~~--~~---~dp~~~l~~v~~~~a~~wd~~~~  144 (150)
T 2ig6_A          107 LALEAVPSLKN---------------------------MY--SV---DDGIFAVLYFTKGEGTICSFKGE  144 (150)
T ss_dssp             HHHHHSGGGGG---------------------------TC--CT---TSSCEEEEEEEEEEEEEECSSSC
T ss_pred             HHHHhChHHHH---------------------------hh--cC---CCCcEEEEEEECCEEEEEeCCCC
Confidence            88877665443                           34  21   23679999999999999988655

>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis}

Probab=99.83  E-value=6.3e-20  Score=155.92  Aligned_cols=118  Identities=16%  Similarity=0.229  Sum_probs=97.5

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC--CeEEEEEEEEEecCCcch
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL--KRSVRIEGHVEKTSDKES  128 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~--~~qvri~G~a~~~~~~~~  128 (331)
                      +.++++|||+++||.|++|+|.+...++++|||+|+..|+|+++|++||+|+++|+++..  .++|+|+|+|+++++.+.
T Consensus        13 ~~~~~~LaTv~~dG~P~~~p~~~~~~~~~~l~f~t~~~s~k~~~l~~np~V~l~~~~~~~~~~~~v~i~G~a~~v~d~~~   92 (150)
T 2hhz_A           13 DMKVGVFATLDEYGNPHARHAHITAANEEGIFFMTSPETHFYDQLMGDQRVAMTAISEEGYLIQVVRVEGTARPVENDYL   92 (150)
T ss_dssp             HTCEEEEEEECTTCCEEEEEEEEEEEETTEEEEEECTTSHHHHHHHHCCEEEEEEEECSTTCCEEEEEEEEEEEECHHHH
T ss_pred             cCCeEEEEEECCCCCEEEEEEEEEEEcCCEEEEEecCCCHHHHHHhhCCeEEEEEEcCCcceeEEEEEEEEEEECCcHHH
Confidence            456799999999999999999998777778999999999999999999999999999875  389999999999998877


Q ss_pred             hHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCC
Q psy2497         129 DDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSD  199 (331)
Q Consensus       129 ~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~  199 (331)
                      .++|..+|...                           ++|++    +..+++++|+|.|.+++||+...+
T Consensus        93 ~~~~~~~p~~~---------------------------~~~~~----~~~~~~~v~~i~~~~~~~~d~~~~  132 (150)
T 2hhz_A           93 KTVFADNPYYQ---------------------------HIYKD----ESSDTMQVFQIYAGHGFYHSLTQG  132 (150)
T ss_dssp             HHHHTTCGGGG---------------------------GGCC---------CCEEEEEEEEEEEEEEGGGT
T ss_pred             HHHHHhChhhh---------------------------hcccC----CCCCcEEEEEEEccEEEEEECCCC
Confidence            78886544322                           23322    133579999999999999998765

>3u35_A General stress protein; PNP-oxidase like fold, FMN/FAD, protein BI; HET: PGE; 2.50A {Xanthomonas axonopodis PV} PDB: 3u34_A*

Probab=99.83  E-value=3.7e-21  Score=170.21  Aligned_cols=124  Identities=14%  Similarity=0.161  Sum_probs=100.7

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEE-eeCCe-EEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcc-
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKS-YGKNG-FVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKE-  127 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~-~~~~g-l~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~-  127 (331)
                      +.++++|||+++|| |++|+|++.. .+.+| |||+|+..|+|+++|++||+|+|||+++...+||+|+|+|+++++.+ 
T Consensus        37 ~~~~~~LaTv~~dg-p~~rpm~~~~d~d~~g~l~F~T~~~s~K~~~l~~np~v~l~~~~~~~~~~V~v~G~a~vv~D~e~  115 (182)
T 3u35_A           37 SDRTVMLGLDGVED-GHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAM  115 (182)
T ss_dssp             HHCEEEECCTTSGG-GCCEEEECBCSSSSCSCEEEEEETTCGGGGGCTTCEEEEEEEECTTSSEEEEEEEEEEECCCHHH
T ss_pred             cCCEEEEEEecCCC-CcEEEEEEEEeecCCCEEEEEECCCCHHHHHHHHCCcEEEEEECCCCCeEEEEEEEEEEEcCHHH
Confidence            56679999999886 8999999863 23345 99999999999999999999999999998899999999999976543 


Q ss_pred             hhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHH-HHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceEE
Q psy2497         128 SDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEE-LRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIV  206 (331)
Q Consensus       128 ~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~-~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~  206 (331)
                      .+++|                              .. +..+|++++   .+|++++|+|.|.+++||++..+ +-.|+.
T Consensus       116 ~~~lw------------------------------~~~~~~~~p~g~---~dP~~~vlrv~p~~~e~Wd~~~~-~~~~~~  161 (182)
T 3u35_A          116 VDRLW------------------------------NPYVAAWYEGGK---TDPNLALLRLDADHAQIWLNESS-LLAGIK  161 (182)
T ss_dssp             HHHHC------------------------------CHHHHTTCTTGG---GCTTEEEEEEEEEEEEEEEEEEE-ECCCEE
T ss_pred             HHHHH------------------------------HHHHHHhccCCC---CCCCEEEEEEEeCEEEEEeCCCC-ceeeee
Confidence            23444                              22 345676553   56789999999999999999876 567777


Q ss_pred             Eec
Q psy2497         207 FKR  209 (331)
Q Consensus       207 f~k  209 (331)
                      +..
T Consensus       162 ~~~  164 (182)
T 3u35_A          162 VLL  164 (182)
T ss_dssp             EEC
T ss_pred             eec
Confidence            764

>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1

Probab=99.82  E-value=6.5e-20  Score=155.04  Aligned_cols=118  Identities=17%  Similarity=0.244  Sum_probs=93.5

Q ss_pred             CCCceEEEEeecCCCCeeEEEEEE-EEee-CCeEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcc
Q psy2497          50 IEANAMFIATSTKNGIPSGRMVLL-KSYG-KNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKE  127 (331)
Q Consensus        50 ~e~~~~~LATvd~dG~P~~R~V~~-r~~~-~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~  127 (331)
                      .+.++++|||+++||.|++|||.+ ..++ ++.|||+|+..|+|+++|++||+|+|+|+++...++|+|.|+|+++++.+
T Consensus        20 ~~~~~~~LaT~~~dG~P~~~pv~~~~~~~~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~~~~~v~v~G~a~~v~d~~   99 (148)
T 2i02_A           20 KNIDYGMFTTVDDDGSLHSYPMSKSGDINSEATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQRYVSISGTSQLVKDRN   99 (148)
T ss_dssp             TTCCEEEEEEECTTSCEEEEEEECBCC---CCEEEEEEETTSHHHHHHHHCCEEEEEEEETTTTEEEEEEEEEEEECCHH
T ss_pred             hcCCEEEEEEEcCCCCEEEEEeEeeEEEcCCCeEEEEEcCCCHHHHHHHhCCcEEEEEEcCCCCeEEEEEEEEEEEcCHH
Confidence            367899999999999999999999 6665 44599999999999999999999999999998889999999999987654


Q ss_pred             h-hHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCC
Q psy2497         128 S-DDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSD  199 (331)
Q Consensus       128 ~-~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~  199 (331)
                      . .++|...                             +..+++++.   ..++|++|+|.|++++||++..+
T Consensus       100 ~~~~~~~~~-----------------------------~~~~~~~~~---~~~~~~v~~i~~~~~~~~~~~~~  140 (148)
T 2i02_A          100 KMRELWKPE-----------------------------LQTWFPKGL---DEPDIALLKVNINQVNYWDSTSS  140 (148)
T ss_dssp             HHHHHCCGG-----------------------------GGGTCTTGG---GCTTEEEEEEEEEEEEEEEGGGT
T ss_pred             HHHHHHhHH-----------------------------HHHHccCCC---CCCCEEEEEEEeCEEEEEcCCCC
Confidence            3 4454211                             111233221   23569999999999999998654

>2iab_A Hypothetical protein; NP_828636.1, structural genomics, JOIN for structural genomics, JCSG; 2.00A {Streptomyces avermitilis}

Probab=99.82  E-value=1.2e-19  Score=155.86  Aligned_cols=125  Identities=14%  Similarity=0.178  Sum_probs=99.0

Q ss_pred             CCCceEEEEeecCC-CCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcch
Q psy2497          50 IEANAMFIATSTKN-GIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKES  128 (331)
Q Consensus        50 ~e~~~~~LATvd~d-G~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~~  128 (331)
                      .+.++++|||+++| |.|++++|.+. +++++|||+|+..|+|+++|++||+|+|++.+.  .++|+|+|+|+++++++.
T Consensus        22 ~~~~~~~LaT~~~d~G~P~~~pv~~~-~d~~~l~f~t~~~s~K~~~l~~np~Vsl~v~~~--~~~v~v~G~a~~v~d~~~   98 (155)
T 2iab_A           22 ELDVDAWVSTAGADGGAPYLVPLSYL-WDGETFLVATPAASPTGRNLSETGRVRLGIGPT--RDLVLVEGTALPLEPAGL   98 (155)
T ss_dssp             HHCCEEEEEEECTTSSCEEEEEEECE-ECSSCEEEEEETTSHHHHHHHHHCEEEEEESST--TCEEEEEEEEEEECGGGC
T ss_pred             hCCCeEEEEEecCCCCCceEEEEEEE-EECCEEEEEECCCCHHHHHHhhCCcEEEEEEcC--CCEEEEEEEEEEecCchh
Confidence            36788999999999 99999999997 676789999999999999999999999999987  489999999999875431


Q ss_pred             hHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceEEEe
Q psy2497         129 DDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFK  208 (331)
Q Consensus       129 ~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~~f~  208 (331)
                                                   +.+.++.+.++|...+..+. +.|++|+|.|+++++|+. .+++|.|.+|.
T Consensus        99 -----------------------------~~~~~~~~~~k~~~~~~~~~-~~~~~~ri~p~~v~~w~~-~~~l~~r~~~~  147 (155)
T 2iab_A           99 -----------------------------PDGVGDTFAEKTGFDPRRLT-TSYLYFRISPRRVQAWRE-ANELSGRELMR  147 (155)
T ss_dssp             -----------------------------CTTHHHHHHHHHSCCGGGCS-SCEEEEEEEEEEEEEESS-GGGSTTCEEEE
T ss_pred             -----------------------------HHHHHHHHHHHhCCCccccC-CCEEEEEEEEEEEEEecC-CCCcCcceEEE
Confidence                                         11122333344421110122 459999999999999986 67899999996

>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1

Probab=99.78  E-value=9.4e-19  Score=147.01  Aligned_cols=115  Identities=15%  Similarity=0.211  Sum_probs=92.7

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeC-CeEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcc-h
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGK-NGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKE-S  128 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~-~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~-~  128 (331)
                      +.++++|||++++|.|++|||.+...++ +.|||+|+..|+|+++|++||+|+++|+++...++|+|.|+|+++.+.+ .
T Consensus        17 ~~~~~~LaT~~~~G~P~~~pv~~~~~~~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~~~~~v~v~G~a~~v~d~~~~   96 (146)
T 2hq7_A           17 SSKIVMVGTNGENGYPNIKAMMRLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNKFAGLMLVGTIEILHDRASK   96 (146)
T ss_dssp             HCSEEEEEEECGGGCEEEEEEEEEEEETTTEEEEEEECCHHHHHHHHHCCEEEEEEECSSSSEEEEEEEEEEEECCHHHH
T ss_pred             cCCEEEEEEECCCCCEEEEEEEEEEEcCCCEEEEEecCCCHHHHHHhhCCeEEEEEECCCCceEEEEEEEEEEEcCHHHH
Confidence            4568999999999999999999987664 4699999999999999999999999999998889999999999987643 2


Q ss_pred             hHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHH-HHhhcCCCCCCCCCceEEEEEeceEEEeeecCC
Q psy2497         129 DDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEEL-RQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQS  198 (331)
Q Consensus       129 ~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~-~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~  198 (331)
                      .+.|                              +.+ ..+++++   +.+++|++|+|.|++++||++.+
T Consensus        97 ~~~~------------------------------~~~~~~~~~~~---~~~~~~~~~~i~p~~~~~w~~~~  134 (146)
T 2hq7_A           97 EMLW------------------------------TDGCEIYYPLG---IDDPDYTALCFTAEWGNYYRHLK  134 (146)
T ss_dssp             HHHC------------------------------CTTHHHHCTTG---GGCTTEEEEEEEEEEEEEEETTE
T ss_pred             HHHH------------------------------HHHHHHHCCCC---CCCCCEEEEEEEccEEEEEeCCC
Confidence            3333                              222 2223333   23467999999999999998754

>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme}

Probab=99.77  E-value=8.9e-20  Score=162.86  Aligned_cols=109  Identities=16%  Similarity=0.187  Sum_probs=91.6

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCCC--CceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcC
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGED--GWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTS  275 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~--gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~  275 (331)
                      .|+|+.|.+..+           +.+++  |++|+|++.|+|+     ++|++||+|||+|+|+.+.|||||+|+|+.++
T Consensus        35 dG~P~~R~v~~~-----------~~d~~~~~l~F~T~~~S~K~-----~~l~~np~v~l~f~~~~~~~qvri~G~a~~v~   98 (195)
T 2i51_A           35 NGRPANRTLVFR-----------GFLEDTNQLRFITDTRSAKA-----DQIQQQPWAEICWYFPNTREQFRMAGDLTLIS   98 (195)
T ss_dssp             TSCEEEEEEECC-----------CBCTTSSCEEEEEETTSHHH-----HHHHHCCEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred             CCCeeEEEEEEE-----------EEcCCCCeEEEEEcCCccHH-----HHHhhCCeEEEEEEeCCCCEEEEEEEEEEEEC
Confidence            467999999887           34554  9999999999996     37999999999999999999999999999999


Q ss_pred             HHHHH--------HHHhcCCCCccc-ceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497         276 DKESD--------DYFQSRPYASKI-GAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH  331 (331)
Q Consensus       276 ~~es~--------~yf~~Rp~~sqi-~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~  331 (331)
                      +++++        +||++||..||+ ++|+|+| ++|.+..      +++.++|.  .++|+|++
T Consensus        99 ~~~~~~~~~~~r~~~w~~~~~~sr~~~~~~spg-~~~~~~~------~~~~~~~~--~~~p~p~~  154 (195)
T 2i51_A           99 SDDSHQDLQPARIAMWQELSDAARLQFGWPYPG-KPRIKES------GAFEPSPP--DPIEPVPN  154 (195)
T ss_dssp             SSSTTGGGHHHHHHHHHHSCHHHHHGGGSCCTT-SBCCCCG------GGGCCCCC--CSSSCCTT
T ss_pred             hHHhhhhhHHHHHHHHHhCChhhhhhcccCCCC-CCccchh------HHhhhhcc--CCCCCCCc
Confidence            99997        999999999999 5999996 7776443      23445565  25888875

>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} SCOP: b.45.1.0

Probab=99.77  E-value=2.8e-18  Score=143.87  Aligned_cols=113  Identities=13%  Similarity=0.210  Sum_probs=89.3

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEe---CCCCeEEEEEEEEEecCCcc
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYW---EPLKRSVRIEGHVEKTSDKE  127 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~---~~~~~qvri~G~a~~~~~~~  127 (331)
                      +.++++|||++ ||.|++|||.+.. +++.|||+|+..|+|+++|++||+|+|++.+   +...++|+|.|+|+++++.+
T Consensus        14 ~~~~~~LaT~~-dg~P~~~pv~~~~-~~~~l~f~t~~~s~k~~~l~~np~v~l~v~~~~d~~~~~~v~v~G~a~~~~d~~   91 (139)
T 3ec6_A           14 GQRTGVLSTVR-NDKPHSAFMMFFH-EDFVLYVATDRQSKKITDIENNPNVHVLLGREGKKLDEDYIEVEGLASIEEDST   91 (139)
T ss_dssp             SCCEEEEEEEE-TTEEEEEEEECEE-ETTEEEEEEETTCHHHHHHHHCCEEEEEECC---CTTCCEEEEEEEEEEECCHH
T ss_pred             cCCEEEEEEec-CCCEEEEEEEEEE-eCCEEEEEECCCCHHHHHHHhCCcEEEEEEecCCCCCccEEEEEEEEEEEcCHH
Confidence            66789999999 9999999999985 6668999999999999999999999999843   35578999999999987643


Q ss_pred             -hhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCC
Q psy2497         128 -SDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQS  198 (331)
Q Consensus       128 -~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~  198 (331)
                       .+++|..                             .++.+| ++.   ..+++++|+|.|.+++||+..+
T Consensus        92 ~~~~~~~~-----------------------------~~~~~~-~~~---~~~~~~~i~i~p~~~~~~d~~g  130 (139)
T 3ec6_A           92 LKNKFWNN-----------------------------SLKRWL-LRP---EDPNYVLIKINPDTIYYIDGAG  130 (139)
T ss_dssp             HHHHHCCG-----------------------------GGGGTC-SST---TCTTEEEEEEEEEEEEEEC---
T ss_pred             HHHHHHHH-----------------------------HHHHHh-CCC---CCCCEEEEEEEeeEEEEEcCCC
Confidence             4556631                             112344 232   3467999999999999998865

>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua}

Probab=99.75  E-value=1.2e-17  Score=137.60  Aligned_cols=111  Identities=14%  Similarity=0.232  Sum_probs=81.4

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEe-CCCCeEEEEEEEEEecCCcchh
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYW-EPLKRSVRIEGHVEKTSDKESD  129 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~-~~~~~qvri~G~a~~~~~~~~~  129 (331)
                      +.++++|||++ +|.|++|||.+.. +++.|||+|+..|+|+++|++||+|+|++.+ +...++|+|.|+|+++.+.   
T Consensus        16 ~~~~~~LaT~~-~g~P~~~pv~~~~-~~~~l~f~t~~~s~k~~~l~~np~v~l~v~~~~~~~~~v~v~G~a~~v~d~---   90 (128)
T 3db0_A           16 QHQVGVLTSVQ-GDFPHARYMTFLH-DGLTLYTPSGKELPKTEEVRRNPHVCVLIGYDSPGSAFLEINGLASLEEDE---   90 (128)
T ss_dssp             TCCEEEEEEEE-TTEEEEEEEECEE-ETTEEEEEC----CTTCCCCCCCEEEEEECCCSTTCCEEEEEEEEEECCCH---
T ss_pred             hCCEEEEEEec-CCCEEEEEEEEEe-cCCEEEEEECCCCHHHHHHHhCCceEEEEEEcCCCCcEEEEEEEEEEEcCH---
Confidence            67889999997 7999999999985 6668999999999999999999999999765 6677999999999997643   


Q ss_pred             HHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeee
Q psy2497         130 DYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQ  195 (331)
Q Consensus       130 ~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq  195 (331)
                                                +...+.|+.+...|.++.   ..+++++|+|.|++++||.
T Consensus        91 --------------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~ri~p~~~~~~~  127 (128)
T 3db0_A           91 --------------------------SIKERIWENISKDWFQGE---DSPSFVVIKIVPEQIRILN  127 (128)
T ss_dssp             --------------------------HHHHHHHHHHCSSCCC---------CCEEEEEEEEEEEEC
T ss_pred             --------------------------HHHHHHHHHHHHHhCCCC---CCCCEEEEEEEeEEEEEec
Confidence                                      333333333222222222   3367999999999999994

>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1

Probab=99.70  E-value=1.8e-16  Score=132.16  Aligned_cols=112  Identities=19%  Similarity=0.265  Sum_probs=89.9

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeC-CeEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcc-h
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGK-NGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKE-S  128 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~-~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~-~  128 (331)
                      +..+++|||++++|.|++++|.+...++ +.|||+|+..|+|+++|++||+|+++|.++.  ++|+|.|+|+++++.+ .
T Consensus        19 ~~~~~~LaT~~~~G~P~~~pv~~~~~~~~~~l~f~t~~~s~k~~~l~~np~v~l~~~~~~--~~v~v~G~a~~v~d~~~~   96 (141)
T 2fhq_A           19 KCEVVTLASVNKEGYPRPVPMSKIAAEGISTIWMSTGADSLKTIDFLSNPKAGLCFQEKG--DSVALMGEVEVVTDEKLK   96 (141)
T ss_dssp             TCSEEEEEEECTTSCEEEEEEECCEEETTTEEEEEEETTSHHHHHHHHCCEEEEEEEETT--EEEEEEEEEEEECCHHHH
T ss_pred             cCCEEEEEEECCCCCEEEEeeEEEEeCCCCeEEEEeCCCCHHHHHHHhCCcEEEEEEeCC--CEEEEEEEEEEECCHHHH
Confidence            4678999999999999999999976665 5799999999999999999999999999876  6999999999988642 3


Q ss_pred             hHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeec
Q psy2497         129 DDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQG  196 (331)
Q Consensus       129 ~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~  196 (331)
                      +++|...                             +..+|+++.   ..+.+++|+|+|.+++||++
T Consensus        97 ~~~~~~~-----------------------------~~~~~p~~~---~~~~~~~~~i~p~~~~~~~~  132 (141)
T 2fhq_A           97 QELWQDW-----------------------------FIEHFPGGP---TDPGYVLLKFTANHATYWIE  132 (141)
T ss_dssp             HHSCCGG-----------------------------GGGTCTTCT---TCTTEEEEEEEEEEEEEEET
T ss_pred             HHHHHHH-----------------------------HHHHcCCCC---CCCCEEEEEEEcCEEEEeeC
Confidence            4444211                             112333332   23579999999999999987

>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1

Probab=99.68  E-value=1.3e-16  Score=136.74  Aligned_cols=77  Identities=14%  Similarity=0.240  Sum_probs=67.9

Q ss_pred             CCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC-------CeEEEEEEEEEe
Q psy2497          50 IEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL-------KRSVRIEGHVEK  122 (331)
Q Consensus        50 ~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~-------~~qvri~G~a~~  122 (331)
                      .+.++++|||+++||.|++++|.+...+++++||+|+..|+|+++|++||+|+|+|.++..       .++|+|.|+|++
T Consensus        28 ~~~~~~~LaTv~~dG~P~~~~v~~~~~~~g~~~f~t~~~s~k~~nl~~np~vsl~v~~~~~~~~~~~~~~~v~i~G~a~~  107 (157)
T 1vl7_A           28 QEFQSAIISTISEQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAKTNQIFARRRLSFDCTATL  107 (157)
T ss_dssp             TTCSEEEEEEECTTSCEEEEEEEEEECTTCCEEEEECTTSHHHHHHHHCCEEEEEEECCGGGCSSGGGCCEEEEEEEEEE
T ss_pred             HhCCEEEEEEECCCCCEEEEEEEEEEcCCCCEEEEEeCccHHHHHHHhCCcEEEEEEcCccccCCcccCceEEEEEEEEE
Confidence            3678999999999999999999987544457999999999999999999999999998652       478999999999


Q ss_pred             cCCc
Q psy2497         123 TSDK  126 (331)
Q Consensus       123 ~~~~  126 (331)
                      ++++
T Consensus       108 v~~~  111 (157)
T 1vl7_A          108 IERE  111 (157)
T ss_dssp             ECTT
T ss_pred             cCCC
Confidence            8764

>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: MSE FMN; 1.60A {Jannaschia SP}

Probab=99.65  E-value=2.3e-17  Score=144.83  Aligned_cols=88  Identities=13%  Similarity=0.168  Sum_probs=78.4

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcC--CCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcC
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEG--EDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTS  275 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~--~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~  275 (331)
                      .| ++.|.+..+           +++  +++++|+|++.|+|+     ++|++||+|+|+|+|+.+.|||||+|+|+.++
T Consensus        40 dG-P~~R~v~~~-----------~~~~~~~~l~F~T~~~s~K~-----~~l~~nP~v~l~f~~~~~~~qvri~G~a~~~~  102 (175)
T 2ou5_A           40 DG-PDLRTLVLR-----------AASHAEATLEFHTDAASPKV-----AHIRRDARVAIHIWIPKASLQVRAKAIAKILP  102 (175)
T ss_dssp             TE-EEEEECCCC-----------EEETTTTEEEEEEETTSHHH-----HHHHHCCEEEEEEEEGGGTEEEEEEEEEEEEE
T ss_pred             CC-CceeEEEEE-----------EEEcCCCEEEEEECCCChHH-----HHHhhCCcEEEEEEeCCCCEEEEEEEEEEEeC
Confidence            46 888888665           233  378999999999996     37999999999999999999999999999998


Q ss_pred             HHHHHHHHhcCCCCcccceeccc-CCCCCCC
Q psy2497         276 DKESDDYFQSRPYASKIGAIASD-QSRPCES  305 (331)
Q Consensus       276 ~~es~~yf~~Rp~~sqi~a~~s~-QS~~i~~  305 (331)
                      ++  ++||++||++||++ |+|+ ||.++++
T Consensus       103 d~--~~~w~~~~~~~~~~-~~~~~~~~~~~~  130 (175)
T 2ou5_A          103 GD--PNLFAQLPEAARMN-YQGPVPGTPLPA  130 (175)
T ss_dssp             CC--HHHHHHSCHHHHGG-GSSSCTTCBSSC
T ss_pred             cH--HHHHHHCCHhHHhc-ccCCCCCCcccc
Confidence            88  99999999999999 8884 9999987

>2asf_A Hypothetical protein RV2074; H37RV, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: CIT; 1.60A {Mycobacterium tuberculosis} SCOP: b.45.1.1

Probab=99.64  E-value=4.4e-15  Score=124.02  Aligned_cols=112  Identities=17%  Similarity=0.081  Sum_probs=90.4

Q ss_pred             CCCceEEEEeecCCCCeeEEEEEEEEeeC--CeEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcc
Q psy2497          50 IEANAMFIATSTKNGIPSGRMVLLKSYGK--NGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKE  127 (331)
Q Consensus        50 ~e~~~~~LATvd~dG~P~~R~V~~r~~~~--~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~  127 (331)
                      .+.++++|||++.||.|++++|.+. +++  +.|||+|+..|+|+++|++||+|+++++++.  ++++|.|+|+++++  
T Consensus        19 ~~~~~~~LaT~~~dG~P~~~pv~~~-~~~~~~~l~f~t~~~s~k~~~l~~np~V~l~~~~~~--~~v~v~G~a~~~~d--   93 (137)
T 2asf_A           19 SERHLAMLTTLRADNSPHVVAVGFT-FDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDGA--RWLSLEGRAAVNSD--   93 (137)
T ss_dssp             TSSCCEEEEEECTTSCEEEEEECCE-EETTTTEEEEEEETTCHHHHHHHHHCEEEEEEEETT--EEEEEEEEEEEECC--
T ss_pred             hCCCeEEEEEECCCCCEEEEEEEEE-EECCCCEEEEEeCCCCHHHHHHhhCCeEEEEEECCC--CEEEEEEEEEEecC--
Confidence            3678899999999999999999996 554  4699999999999999999999999998754  88999999998653  


Q ss_pred             hhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeec
Q psy2497         128 SDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQG  196 (331)
Q Consensus       128 ~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~  196 (331)
                                                 .++..+.++.+..+|+.+  .+ .+.+++|+|.|+++..|..
T Consensus        94 ---------------------------~~~~~~~~~~~~~~~~~~--~~-~~~~~viri~~~~v~g~~~  132 (137)
T 2asf_A           94 ---------------------------IDAVRDAELRYAQRYRTP--RP-NPRRVVIEVQIERVLGSAD  132 (137)
T ss_dssp             ---------------------------HHHHHHHHHHHHHHSCCC--CC-CTTEEEEEEEEEEEEECTT
T ss_pred             ---------------------------HHHHHHHHHHHHHhcCcc--cC-CCCEEEEEEEEEEEEEecc
Confidence                                       344444455555666433  22 3568999999999998854

>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis}

Probab=99.58  E-value=1.2e-14  Score=120.22  Aligned_cols=114  Identities=15%  Similarity=0.124  Sum_probs=87.0

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC-CeEEEEEEEEEecCCcchh
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL-KRSVRIEGHVEKTSDKESD  129 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~-~~qvri~G~a~~~~~~~~~  129 (331)
                      +..+++|||+++||.|++++|.+. ++++.|||+|+..|+|+++|++||+|+|++.++.. .++|+|.|+|+.+++++. 
T Consensus        14 ~~~~~~LaT~~~dG~P~~~pv~~~-~d~~~l~f~t~~~s~k~~~l~~np~v~l~v~~~~~~~~~v~v~G~a~~v~~~~~-   91 (131)
T 3f7e_A           14 RPLYGHLATVRPDGTPQVNAMWFA-WDGEVLRFTHTTKRQKYRNIKANPAVAMSVIDPDNPYRYLEVRGLVEDIVPDPT-   91 (131)
T ss_dssp             SCCCEEEEEECTTSCEEEEEECCE-ECSSCEEEEEETTSHHHHHHHHCCEEEEEEECSSCTTCEEEEEEEEEEEEECTT-
T ss_pred             CCCcEEEEEECCCCCEEEEEEEEE-EECCEEEEEECCCCHHHHHHhhCCcEEEEEEcCCCCeeEEEEEEEEEEeccCcc-
Confidence            567899999999999999999986 56667999999999999999999999999998764 689999999988764321 


Q ss_pred             HHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCC--CCCCCCceEEEEEeceEEEeee
Q psy2497         130 DYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGD--YVPRPKHWGGYVVIPKVIEFWQ  195 (331)
Q Consensus       130 ~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~--~~p~P~~~~~l~v~p~~iEfwq  195 (331)
                                               ..    ..+.+.++|....  .....+..++|+|.|+++-.|.
T Consensus        92 -------------------------~~----~~~~l~~ky~~~~~~~~~~~~~~~v~ri~~~~~~gk~  130 (131)
T 3f7e_A           92 -------------------------GA----FYLKLNDRYDGPLTEPPADKADRVIIVVRPTAFSKQV  130 (131)
T ss_dssp             -------------------------CH----HHHHHHHHTTCSCCSCCTTGGGEEEEEEEEEEEECC-
T ss_pred             -------------------------HH----HHHHHHHHhCCcccCCCCCCCCEEEEEEEeEEEEeec
Confidence                                     11    1223344443211  0112356899999999998763

>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1}

Probab=99.58  E-value=6.1e-15  Score=125.72  Aligned_cols=114  Identities=12%  Similarity=0.114  Sum_probs=89.8

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEee--CCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC---CeEEEEE-EEEEecC
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYG--KNGFVFFTNYNSRKGNELAENPQASLAFYWEPL---KRSVRIE-GHVEKTS  124 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~--~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~---~~qvri~-G~a~~~~  124 (331)
                      +.+.+.|||++ +|.|++|+|.+..++  ++.|||.|+.+|+|++||.+||+|++|.+.++.   ..+||++ |+|+..+
T Consensus        13 ~~~~~~LAT~~-~g~P~vR~v~f~~~~~~~~~LYF~T~~~k~k~~ql~~Np~V~i~~~~~d~~~~~~~IRi~~G~a~~~~   91 (145)
T 3ba3_A           13 STNKIALSTAV-NNEADVKIVNFVWYEAQPDTLYFSSVKTSPALKVYDQNPDIAFITIPNDGTAGNPYLRAQHVKLQRST   91 (145)
T ss_dssp             TEEEEEEEEEE-TTEEEEEEEECEECTTSTTEEEEEEETTCTHHHHHTTCCEEEEEEEECTTCTTCCEEEEEEEEEEECS
T ss_pred             hCCcEEEEECC-CCCEEEEEEEEEEEecCCCEEEEEECCCCHHHHHHHhCCCEEEEEECCCCCccceEEEEEeEEEEEcC
Confidence            56789999965 899999999998554  457999999999999999999999999998776   6899999 9999976


Q ss_pred             C---cchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeecC
Q psy2497         125 D---KESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQ  197 (331)
Q Consensus       125 ~---~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~  197 (331)
                      +   +-.+.+|...|.                           ++..|+..    + +++++|.|.|.++.+-...
T Consensus        92 ~~~~~~k~~~~e~~P~---------------------------~k~~y~~~----~-~~l~vf~i~~~~a~~~~~~  135 (145)
T 3ba3_A           92 KTMTDLLPQYLETVPN---------------------------YQQVWDAI----G-STLVVFELKLTDLFVDAGV  135 (145)
T ss_dssp             CCHHHHHHHHHHHSTT---------------------------HHHHHHHH----G-GGEEEEEEECSEEEEECCT
T ss_pred             CchHHHHHHHHHhChh---------------------------hhhcccCC----C-CcEEEEEEECCEEEEECCC
Confidence            3   222455554432                           33445321    2 3799999999999998743

>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1

Probab=99.56  E-value=8.4e-14  Score=118.74  Aligned_cols=123  Identities=15%  Similarity=0.115  Sum_probs=87.2

Q ss_pred             CceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC---CeEEEEEEEEEecCCcc-
Q psy2497          52 ANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL---KRSVRIEGHVEKTSDKE-  127 (331)
Q Consensus        52 ~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~---~~qvri~G~a~~~~~~~-  127 (331)
                      ..+++|||++++|.|++++|.+. ++++.|||+|+..|+|+++|++||+|+++|..+..   .+.|+|.|+|+++++++ 
T Consensus        22 ~~~~~LaT~~~~G~P~~~pv~~~-~~~~~l~~~t~~~~~k~~~l~~np~v~l~~~~~~~~~~~~~v~~~G~a~~v~d~~~  100 (162)
T 1rfe_A           22 SRTGTLATIGPDGQPHLTAMWYA-VIDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDTLRGVSFEGVAEIVEEPEA  100 (162)
T ss_dssp             CCCEEEEEECTTSCEEEEEECCE-EETTEEEEEEETTSHHHHHHHHCCEEEEEEEECSSGGGCEEEEEEEEEEEECCHHH
T ss_pred             CcEEEEEEECCCCCEEEEEEEEE-EECCEEEEEecCccHHHHHHhhCCeEEEEEEcCCCcccccEEEEEEEEEEeCChHH
Confidence            45699999999999999999996 56667999999999999999999999999987654   26799999999987643 


Q ss_pred             hhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCC
Q psy2497         128 SDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQS  198 (331)
Q Consensus       128 ~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~  198 (331)
                      ..+.|.....     .|..  + ....       +..+.    +.    ..+.+++|+|.|+++++|+...
T Consensus       101 ~~~~~~~l~~-----~~~~--~-~~~~-------~~~~~----~~----~~~~~~v~~i~~~~~~~~~~~~  148 (162)
T 1rfe_A          101 LHRVGVSVWE-----RYTG--P-YTDE-------CKPMV----DQ----MMNKRVGVRIVARRTRSWDHRK  148 (162)
T ss_dssp             HHHHHHHHHH-----HHTC--C-CCGG-------GHHHH----HH----HTTTEEEEEEEEEEEEEEEGGG
T ss_pred             HHHHHHHHHH-----HhcC--c-ccch-------hHHHH----Hh----ccCceEEEEEEEEEEEEecccc
Confidence            2333321100     0000  0 0000       00110    00    1246999999999999998743

>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A*

Probab=99.50  E-value=1.8e-13  Score=114.71  Aligned_cols=75  Identities=17%  Similarity=0.104  Sum_probs=67.7

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCC--eEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCc
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKN--GFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDK  126 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~--gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~  126 (331)
                      +..+++|||++.||.|++++|.+. ++++  .|||+|+..|+|+++|++||+|+++|..+....+|+|.|+|+++++.
T Consensus        16 ~~~~~~LaT~~~~G~P~~~pv~~~-~~~~~~~l~~~t~~~~~k~~~l~~np~v~l~~~~~~~~~~v~v~G~a~~~~d~   92 (147)
T 2aq6_A           16 GNSIGVLATIKHDGRPQLSNVQYH-FDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPA   92 (147)
T ss_dssp             TCSEEEEEEECTTSCEEEEEEECE-EETTTTEEEEEEETTSHHHHHHHHCCEEEEEEECTTSSCEEEEEEECEECCCC
T ss_pred             cCCeEEEEEECCCCCEEEEEEEEE-EcCCCCEEEEEecCCCHHHHHHhhCCcEEEEEEcCCCcEEEEEEEEEEEcCCC
Confidence            567899999999999999999996 5655  59999999999999999999999999987766889999999998864

>2htd_A Predicted flavin-nucleotide-binding protein from family structurally related to pyridoxine...; putative pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A {Lactobacillus delbrueckii subsp}

Probab=99.43  E-value=5.3e-13  Score=112.46  Aligned_cols=74  Identities=15%  Similarity=0.184  Sum_probs=66.9

Q ss_pred             ceEEEEeecCCCCeeEEEEEEEE-eeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCc
Q psy2497          53 NAMFIATSTKNGIPSGRMVLLKS-YGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDK  126 (331)
Q Consensus        53 ~~~~LATvd~dG~P~~R~V~~r~-~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~  126 (331)
                      .+++|||+|+||.|+++++.+.. .+++.|||+|...++|+++|++||+|+|+|+++...++++|.|+|+++++.
T Consensus        39 ~~~~LATv~~dG~P~~~p~~f~~~~d~~~l~f~~~~~~~k~~nL~~np~V~l~~~~~~~~~~v~i~G~a~~v~d~  113 (140)
T 2htd_A           39 NLVYLATVDADGNPQVGPKGSMTVLDPSHLQYLEKTKGEAYENIKRGSKVALVAADVPSHTAVRVLATAEVHEDD  113 (140)
T ss_dssp             SCEEEEEECTTCCEEEEEETTCEEEETTEEEEEESSCCHHHHHHHTTCCEEEEEEETTTTEEEEEEEEEEEESSS
T ss_pred             CCEEEEEECCCCCEEEecceeEEecCCCEEEEeccCCchHHHHhhcCCeEEEEEEecCCCCEEEEEEEEEEecCh
Confidence            36999999999999999998854 456689999999999999999999999999999989999999999987654

>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum}

Probab=99.35  E-value=3.3e-12  Score=109.30  Aligned_cols=73  Identities=14%  Similarity=0.185  Sum_probs=64.9

Q ss_pred             CCceEEEEeecCC-CCeeEEEEEE-EEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCC
Q psy2497          51 EANAMFIATSTKN-GIPSGRMVLL-KSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSD  125 (331)
Q Consensus        51 e~~~~~LATvd~d-G~P~~R~V~~-r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~  125 (331)
                      +.++++|||+++| |.|+++++.+ ...+++.|||+|+..++|+++|++||+|+|+|..++  ..++|+|+|+++.+
T Consensus        20 ~~~~~~LATv~~d~G~P~~sp~~~~~~~d~~~l~f~~~~~~~k~~nl~~np~Vsl~v~~~~--~~~~i~G~A~~v~d   94 (151)
T 2q9k_A           20 DLPLVFLITHDQSKSWPITHAISWVYAKDETTIRFAIEADSLLVKTLADHPVFTLIFFADQ--STYSLTCTDVAAWE   94 (151)
T ss_dssp             SCCCEEEEECCTTSSSCEEEEECCEEEEETTEEEEEEETTCTHHHHHHHSCCEEEEEEETT--EEEEEEEEEEEEEC
T ss_pred             cCCEEEEEEEcCCCCcEeEeeeEEEEEeCCCEEEEEECCCcHHHHHHHhCCcEEEEEECCC--CEEEEEEEEEEEeC
Confidence            5678999999999 9999999944 456777899999999999999999999999999765  47899999998775

>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}

Probab=99.34  E-value=5.9e-12  Score=107.14  Aligned_cols=75  Identities=16%  Similarity=0.284  Sum_probs=65.4

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC-------CeEEEEEEEEEec
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL-------KRSVRIEGHVEKT  123 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~-------~~qvri~G~a~~~  123 (331)
                      +.++++|||+++||.|++.+|.+- .+++++||+|+..|+|.++|++||+|+|++..+..       ..-+.+.|+|+.+
T Consensus        13 ~~~~~~LaT~~~~G~P~~s~v~~~-~~~~~~~~~~s~~~~~~~nl~~~prvsl~v~~~~~~~~~~~~~~rltl~G~a~~v   91 (148)
T 3tgv_A           13 ERKTLQLATVDAQGRPNVSYAPFV-QNQEGYFVLISHIARHARNLEVNPQVSIMMIEDETEAKQLFARKRLTFDAVASMV   91 (148)
T ss_dssp             HCCEEEEEEECTTCCEEEEEEEEE-EETTEEEEEEETTSHHHHHHHHSCEEEEEEECCGGGCSCGGGCCEEEEEEEEEEE
T ss_pred             hCCEEEEEEECCCCCEEEEEEEEE-EECCEEEEEECCccHHHHHHHhCCCeEEEEecCcccccCcccceEEEEeeeEEEc
Confidence            567899999999999999999985 56778999999999999999999999999986542       2459999999998


Q ss_pred             CCc
Q psy2497         124 SDK  126 (331)
Q Consensus       124 ~~~  126 (331)
                      .++
T Consensus        92 ~~~   94 (148)
T 3tgv_A           92 ERD   94 (148)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            753

>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1

Probab=99.33  E-value=2e-11  Score=111.68  Aligned_cols=116  Identities=16%  Similarity=0.222  Sum_probs=87.9

Q ss_pred             CCceEEEEeecC--CCCeeEEEEEEEEeeCCe-EEEEecCCCcchhhhhcCCcEEEEEEeCCC-----CeEEEEEEEEEe
Q psy2497          51 EANAMFIATSTK--NGIPSGRMVLLKSYGKNG-FVFFTNYNSRKGNELAENPQASLAFYWEPL-----KRSVRIEGHVEK  122 (331)
Q Consensus        51 e~~~~~LATvd~--dG~P~~R~V~~r~~~~~g-l~F~T~~~S~K~~eL~~np~val~f~~~~~-----~~qvri~G~a~~  122 (331)
                      ..+.++|||+++  ||.|++.+|.+. ++.+| +||+|+..|+|+++|++||+|+|++..+..     ...|+|.|+++.
T Consensus        18 ~~~~~~LaT~~~~~dG~P~~s~v~~~-~d~~g~~~f~~s~~s~k~~nl~~nprvsl~v~~~~~~~~~~~~~v~l~G~a~~   96 (247)
T 2arz_A           18 KEYRAVLSTHSKKWPGFPFGSVVPYC-LDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQ   96 (247)
T ss_dssp             HCSEEEEEEECSSSTTCEEEEEEECE-ECTTSCEEEEEETTSHHHHHHHHCCEEEEEEECTTCSSTTSSCEEEEEEEEEE
T ss_pred             hCCEEEEEEcCCCCCCcceEEEEEEE-ECCCCCEEEEEeChhHHHHHHHhCCCeEEEEecCCCCChhhCceEEEEEEEEE
Confidence            456799999998  999999999875 55555 999999999999999999999999987652     247999999999


Q ss_pred             cCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeecC
Q psy2497         123 TSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQ  197 (331)
Q Consensus       123 ~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~  197 (331)
                      +++++ .                             ......+..+|++.......++|.+|+|.|+++.||.+-
T Consensus        97 v~d~e-~-----------------------------~~~~~~~~~~~P~~~~~~~~~~~~l~rl~~~~~~~~~gf  141 (247)
T 2arz_A           97 LAEEE-V-----------------------------AAAAERYYRYFPESADYHRVHDFDFWVLQPVQWRFIGGF  141 (247)
T ss_dssp             CCHHH-H-----------------------------HHHHHHHHHHCGGGTTCBTTBBEEEEEEEEEEEEEECTT
T ss_pred             CCcHH-H-----------------------------HHHHHHHHHHCcChhhcccccCcEEEEEEEEEEEEEcCC
Confidence            76422 1                             111223344555432122346799999999999999754

>3cp3_A Uncharacterized protein; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}

Probab=99.26  E-value=4e-11  Score=101.35  Aligned_cols=109  Identities=10%  Similarity=-0.074  Sum_probs=79.7

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEe-e--CCeEEEEecCCCcchhhhhcCCcEEEEEEeCC--CCeEEEEEEEEEecCC
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSY-G--KNGFVFFTNYNSRKGNELAENPQASLAFYWEP--LKRSVRIEGHVEKTSD  125 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~-~--~~gl~F~T~~~S~K~~eL~~np~val~f~~~~--~~~qvri~G~a~~~~~  125 (331)
                      +..+++|||++ +|.|+++||.+... +  ++.|||+|. .++|+.+|++||+|++++....  ..+.|.+.|+|+++++
T Consensus        26 ~~~~~~Lat~~-dg~P~v~Pv~f~~~~~~~~~~lyf~ta-~~~K~~~l~~np~V~~~v~~~~~~~~~sV~v~G~a~~v~d  103 (148)
T 3cp3_A           26 SESVGRLVVHR-KDDLDIFPVNFVLDYSAEQPRVYFRTA-EGTKLFSVNLNSDVLFEVDRFDDAEGWSVVLKGNAYVVRD  103 (148)
T ss_dssp             TCSEEEEEEEE-TTEEEEEEEEEEEECSSSSCEEEEEEC---CCSSCTTSCSEEEEEEEECC--CEEEEEEEEEEEECCC
T ss_pred             cCCEEEEEEEe-CCEEEEEEEEEEEEecCCCCEEEEEcC-CCchHHHHhcCCcEEEEEEECCCCCCeEEEEEEEEEEECC
Confidence            55679999996 89999999999632 1  346999999 9999999999999999997733  3468999999999876


Q ss_pred             cc-hhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeecC
Q psy2497         126 KE-SDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQ  197 (331)
Q Consensus       126 ~~-~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~  197 (331)
                      .+ ..+.|...                              ...|     .| .+..++|+|.|+++......
T Consensus       104 ~~e~~~~l~~~------------------------------~~~~-----~~-~~~~~viri~~~~~tgk~~~  140 (148)
T 3cp3_A          104 TEEARHADTLG------------------------------LKPW-----LP-TLKYNFVRIDVREVSGRAFV  140 (148)
T ss_dssp             HHHHHHHTTSC------------------------------CCCC-----CT-TCCCEEEEEEEEEEEEEEEC
T ss_pred             HHHHHHHHhcc------------------------------cccc-----CC-CCceEEEEEEeEEEEEEEcc
Confidence            43 33444220                              0011     11 14689999999999877543

>2fg9_A 5-nitroimidazole antibiotic resistance protein; STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: FAD; 2.20A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1

Probab=99.23  E-value=1.2e-10  Score=101.74  Aligned_cols=83  Identities=20%  Similarity=0.231  Sum_probs=68.1

Q ss_pred             HHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC---
Q psy2497          34 KLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL---  110 (331)
Q Consensus        34 ~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~---  110 (331)
                      +.+.+.|++         ..+++|||+++||.|.+++|.+- ++++.|||+|...++|+++|++||+|+++|..+..   
T Consensus        29 ~ei~~~L~~---------~~~~~Lat~~~dg~P~v~Pv~f~-~~~~~lyfhta~~~~k~~~l~~np~V~~~v~~~~~~is   98 (178)
T 2fg9_A           29 QRIESIILQ---------ADACFVGITDLEGNPYVVPMNFG-YENDTLYLHSGPEGGKIEMLQRNNNVCITFSLGHKLVY   98 (178)
T ss_dssp             HHHHHHHHH---------CSCEEEEEECTTSCEEEEEECCE-EETTEEEEEECSCSHHHHHHHHCCEEEEEEECCCEEEE
T ss_pred             HHHHHHHHh---------CCEEEEEEECCCCcEEEEEEEEE-EECCEEEEEcCCcchHHHHhhcCCcEEEEEEeCCceee
Confidence            444566653         34689999999999999999984 56668999999999999999999999999987653   


Q ss_pred             ------------CeEEEEEEEEEecCCc
Q psy2497         111 ------------KRSVRIEGHVEKTSDK  126 (331)
Q Consensus       111 ------------~~qvri~G~a~~~~~~  126 (331)
                                  .+.|.+.|+|+++++.
T Consensus        99 ~~~~~~~~~t~~y~sV~v~G~a~~v~d~  126 (178)
T 2fg9_A           99 QHKQVACSYSMRSESAMCRGKVEFIEDM  126 (178)
T ss_dssp             EC----CEEEEEEEEEEEEEECEEECSH
T ss_pred             ccCCCCCCCcccEEEEEEEEEEEEECCH
Confidence                        2457899999987653

>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}

Probab=99.18  E-value=3.2e-10  Score=104.76  Aligned_cols=116  Identities=16%  Similarity=0.152  Sum_probs=87.1

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCC-cEEEEEEeCCC-------CeEEEEEEEEEe
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENP-QASLAFYWEPL-------KRSVRIEGHVEK  122 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np-~val~f~~~~~-------~~qvri~G~a~~  122 (331)
                      ..+.++|||+++||.|.+.+|.+.. +++.+||+++.-+.|.++|++|| +|+|++..++.       .+-|+|.|+|++
T Consensus        97 ~~~~~~LAT~~~dG~P~~s~v~~~~-~~g~~~~~~s~~a~h~~NL~~nP~rvSl~v~e~e~~~~~~~~~~rltl~G~a~~  175 (251)
T 3swj_A           97 SFNSVALATLNANGEVVCSYAPFVS-TQWGNYIYISEVSEHFNNIKVNPNNIEIMFLEDESKAASVILRKRLRYRVNASF  175 (251)
T ss_dssp             TCSEEEEEEECTTSCEEEEEEEEEE-ETTEEEEEEETTSHHHHHHHHSTTCEEEEEECCTTTSSCTTCCCEEEEEEEEEE
T ss_pred             hCCEEEEEEECCCCCEEEEEEEEEE-ECCEEEEEEeCchHHHHHHHhCCCeEEEEEEcCcccccCccccceEEEEEEEEE
Confidence            5678999999999999999999864 45679999999999999999999 99999986542       467999999999


Q ss_pred             cCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCC---CCCCCCCceEEEEEeceEEEeeec
Q psy2497         123 TSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEG---DYVPRPKHWGGYVVIPKVIEFWQG  196 (331)
Q Consensus       123 ~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~---~~~p~P~~~~~l~v~p~~iEfwq~  196 (331)
                      +++++                             +..+..+.+..+|++.   +....-+.|.+|+|+|..+-|..+
T Consensus       176 v~~~~-----------------------------e~~~~~~~~~~k~p~a~~~~~~~~~~Df~l~rl~p~~~r~v~G  223 (251)
T 3swj_A          176 LERGE-----------------------------RFDQIYDEFEKQTGGEGGIKTIRKMLDFHLVKLEFKKGRFVKG  223 (251)
T ss_dssp             CCSSH-----------------------------HHHHHHHHHHHHHCSTTTHHHHHTCTTEEEEEEEEEEEEEEEE
T ss_pred             ecChh-----------------------------HHHHHHHHHHHHCCCchhhhhcCcccCEEEEEEEeeEEEEECC
Confidence            87531                             1112223334444431   001223569999999999988854

>2hti_A BH0577 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, FMN-binding protein; HET: FAD; 2.50A {Bacillus halodurans} SCOP: b.45.1.1

Probab=99.16  E-value=5.6e-10  Score=97.80  Aligned_cols=82  Identities=22%  Similarity=0.238  Sum_probs=67.1

Q ss_pred             HHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeC----C
Q psy2497          34 KLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWE----P  109 (331)
Q Consensus        34 ~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~----~  109 (331)
                      +.+...|+         +..+++|||++ +|.|++.||.+. ++++.|||+|...++|+++|++||+|++++..+    .
T Consensus        16 e~i~~~L~---------~~~~~~Lat~~-~g~P~~~Pv~f~-~~~~~ly~hta~~~~k~~~l~~np~V~~~v~~~~~~~~   84 (185)
T 2hti_A           16 KKITEFLN---------KARTGFLGLST-NDQPYVIPLNFV-WHNHAIYFHGASEGRKIKMIEANPEVCFTICEDLGTIV   84 (185)
T ss_dssp             HHHHHHHH---------HCCCEEEEEEE-TTEEEEEEECCE-EETTEEEEEEESSSHHHHHHHHCCEEEEEEEECC----
T ss_pred             HHHHHHHh---------cCCEEEEEEee-CCEEEEEEEEEE-EECCEEEEEeCCcCHHHHHhhcCCeEEEEEEecccccc
Confidence            44556665         34569999999 689999999985 566679999999999999999999999999987    4


Q ss_pred             -------C--CeEEEEEEEEEecCCc
Q psy2497         110 -------L--KRSVRIEGHVEKTSDK  126 (331)
Q Consensus       110 -------~--~~qvri~G~a~~~~~~  126 (331)
                             .  .+.|.+.|+|+++++.
T Consensus        85 ~~v~~~~t~~y~sV~v~G~a~~v~d~  110 (185)
T 2hti_A           85 SPVPAHTDTAYMSVIIFGTIEPVSAI  110 (185)
T ss_dssp             ---------CEEEEEEEEEEEECCCH
T ss_pred             ccccccCcceEEEEEEEEEEEEECCH
Confidence                   1  2559999999998764

>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1

Probab=99.02  E-value=2.8e-09  Score=93.51  Aligned_cols=117  Identities=19%  Similarity=0.113  Sum_probs=83.5

Q ss_pred             CCceEEEEeecC----CCCeeEEEEEEEE--e-eC-CeEEEEecCCCcchhhhhcCCcEEEEEEeC------------CC
Q psy2497          51 EANAMFIATSTK----NGIPSGRMVLLKS--Y-GK-NGFVFFTNYNSRKGNELAENPQASLAFYWE------------PL  110 (331)
Q Consensus        51 e~~~~~LATvd~----dG~P~~R~V~~r~--~-~~-~gl~F~T~~~S~K~~eL~~np~val~f~~~------------~~  110 (331)
                      ..+.++|||+++    +|.|.+-+|.+-.  . ++ +.+||++...+.|+++|++||+|+|++.+.            ..
T Consensus        29 ~~~~g~LaTi~~~~~~dG~P~~s~v~~~~~~~~d~~g~~~f~~s~~~~~~~nl~~nprvSl~v~~~~~~~~~~~~~dp~~  108 (184)
T 1xhn_A           29 VSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTNFCKKHGFDPQS  108 (184)
T ss_dssp             HCSEEEEEEECCCGGGTTCEEEEEEECBSCSTTCCCSCCEEEECTTSHHHHHHHHCCEEEEEEEGGGTTHHHHHTCCTTS
T ss_pred             hCCEEEEEecccCCCCCCcceEEEEEEEeccCcCCCCCEEEEEeCccHhHHHHhhCCCEEEEEecCCCccccccCCCCcc
Confidence            345799999998    9999999998742  0 33 359999999999999999999999999853            23


Q ss_pred             --CeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEec
Q psy2497         111 --KRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIP  188 (331)
Q Consensus       111 --~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p  188 (331)
                        ..-|+|.|+|+.+++++.+.                              ..+.+...+++........+|.+++|.|
T Consensus       109 ~~~~rvtl~G~a~~v~d~e~~~------------------------------~~~~~~~~hP~~~~~~~~~~~~~~~l~i  158 (184)
T 1xhn_A          109 PLCVHIMLSGTVTKVNETEMDI------------------------------AKHSLFIRHPEMKTWPSSHNWFFAKLNI  158 (184)
T ss_dssp             TTSCEEEEEEEEEECCGGGHHH------------------------------HHHHHHHHCGGGGGSCGGGCCEEEEEEE
T ss_pred             ccCceEEEEEEEEECChHHHHH------------------------------HHHHHHHHCcChhHcccCCCEEEEEEEE
Confidence              56799999999987542111                              1112222333211112235799999999


Q ss_pred             eEEEeeecC
Q psy2497         189 KVIEFWQGQ  197 (331)
Q Consensus       189 ~~iEfwq~~  197 (331)
                      +++-|..+-
T Consensus       159 ~~i~~v~gF  167 (184)
T 1xhn_A          159 TNIWVLDYF  167 (184)
T ss_dssp             EEEEEECSS
T ss_pred             eEEEEEccC
Confidence            999877643

>2fur_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Thermoplasma acidophilum} SCOP: b.45.1.1

Probab=99.00  E-value=2.5e-09  Score=95.71  Aligned_cols=82  Identities=13%  Similarity=0.052  Sum_probs=67.2

Q ss_pred             HHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC---
Q psy2497          34 KLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL---  110 (331)
Q Consensus        34 ~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~---  110 (331)
                      +.+.+.|+         +..+++|||++ +|.|++++|.+. ++++.|||+|...++|+++|++||+|+++|..+..   
T Consensus        23 ~ei~~~L~---------~~~~~~Lat~~-dg~P~v~Pv~f~-~~~~~lyfhta~~~~k~~~l~~np~V~~~v~~~~~~v~   91 (209)
T 2fur_A           23 EDLVAMLD---------RNFTCTVSFID-GGIPYAIPMMLA-SEGKTIYLHGSMKSRIYGILKTGQLIAISLLEINGIVL   91 (209)
T ss_dssp             HHHHHHHH---------HCSEEEEEEEE-TTEEEEEEEECE-EETTEEEEEEETTSHHHHHHHTTCCEEEEEEEEEEEEE
T ss_pred             HHHHHHHH---------hCCEEEEEEcc-CCEEEEEEEEEE-EECCEEEEEeCCcCHHHHHhhcCCeEEEEEEcCCeeec
Confidence            44456664         34579999999 899999999986 45567999999999999999999999999986542   


Q ss_pred             ----------CeEEEEEEEEEecCCc
Q psy2497         111 ----------KRSVRIEGHVEKTSDK  126 (331)
Q Consensus       111 ----------~~qvri~G~a~~~~~~  126 (331)
                                .+.|.+.|+|+++.+.
T Consensus        92 ~~~~~~~t~~y~sV~v~G~a~~v~d~  117 (209)
T 2fur_A           92 AKEIKNNSINYVSALIFGRPYEIDDT  117 (209)
T ss_dssp             CSBGGGCEEEEEEEEEEECCEECCCH
T ss_pred             CCCCCCCccEEEEEEEEEEEEEECCH
Confidence                      2568999999987653

>3u5w_A Putative uncharacterized protein; ssgcid, seattle structural genomics center for infectious DI FMN-binding protein; 2.05A {Brucella melitensis biovar abortus} SCOP: b.45.1.0 PDB: 3u0i_A

Probab=99.00  E-value=4.1e-09  Score=89.38  Aligned_cols=73  Identities=16%  Similarity=0.244  Sum_probs=61.4

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC--C-eEEEEEEEEEecCCc
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL--K-RSVRIEGHVEKTSDK  126 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~--~-~qvri~G~a~~~~~~  126 (331)
                      +..++.|||++ ||.|++.||.+. ++++.|||+|. .++|+.+|++||+|++++.....  . +.|.+.|+|+++++.
T Consensus        21 ~~~~~~Lat~~-dg~P~~~Pv~~~-~~~~~ly~~~~-~g~K~~~l~~np~V~~~v~~~~~~~~y~sV~v~G~a~~v~d~   96 (148)
T 3u5w_A           21 HKHVGRLGYVV-DDRPIIVPMTFR-FSGGSFYSFTT-DGQKTNAMRKNDAICILFDQIESQTKWRTVLVQGRYREIARE   96 (148)
T ss_dssp             HCCEEEEEEEE-TTEEEEEEEECE-EETTEEEEEEC-CHHHHHHHHHCCEEEEEEEEESSSSSEEEEEEEEEEEECCGG
T ss_pred             cCCEEEEEEcc-CCcEEEEEEEEE-EECCEEEEEEC-CchhHHHHhcCCcEEEEEEecCCCCcEEEEEEEEEEEEeCCH
Confidence            34579999996 899999999985 56668999995 68999999999999999986442  2 359999999999874

>2hq9_A MLL6688 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FAD; 1.95A {Mesorhizobium loti} SCOP: b.45.1.1

Probab=99.00  E-value=1.4e-09  Score=91.63  Aligned_cols=74  Identities=19%  Similarity=0.214  Sum_probs=62.6

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC--C-eEEEEEEEEEecCCcc
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL--K-RSVRIEGHVEKTSDKE  127 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~--~-~qvri~G~a~~~~~~~  127 (331)
                      +..+++|||++ ||.|+++||.+. ++++.|||+| ..++|+++|++||+|++++.....  . +.|.+.|+|+++++.+
T Consensus        18 ~~~~~~Lat~~-~g~P~~~pv~~~-~~~~~l~~~t-~~~~k~~~l~~~p~V~~~v~~~~~~~~y~sV~v~G~a~~v~d~~   94 (149)
T 2hq9_A           18 ANRVGRLACAK-DGQPYVVPLYYA-YSDAHLYAFS-MPGKKIEWMRANPRVSVQVDEHGQGRGWKSVVVDGRYEELPDLI   94 (149)
T ss_dssp             HCCEEEEEEEE-TTEEEEEEEECE-EETTEEEEEE-CSSHHHHHHHHCCEEEEEEEEECSTTCEEEEEEEEEEEECCSCG
T ss_pred             hCCEEEEEEcc-CCeEEEEEEEEE-EECCEEEEEe-CccHHHHHHhcCCcEEEEEEecCCCCcEEEEEEEEEEEEEcCcc
Confidence            45679999999 999999999994 5666799998 689999999999999999987543  2 3499999999988753

>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}

Probab=98.96  E-value=6e-09  Score=96.61  Aligned_cols=117  Identities=13%  Similarity=0.123  Sum_probs=86.7

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCC-cEEEEEEeCCC-------CeEEEEEEEEEe
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENP-QASLAFYWEPL-------KRSVRIEGHVEK  122 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np-~val~f~~~~~-------~~qvri~G~a~~  122 (331)
                      +.+.++|||++++|.|.+-+|.+- .+++++||+++.-++|.++|++|| +|+|++..++.       .+-|++.|+|+.
T Consensus        97 ~~~~~~LAT~~~~G~P~~S~v~f~-~~~g~~~iliS~lA~Ht~NL~~np~rvSllviede~~~~~~~a~~Rlt~~g~A~~  175 (259)
T 3gas_A           97 GFDSVCLATLHPNGHVVCSYAPLM-SDGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAILRKRLRYKTNTRF  175 (259)
T ss_dssp             TCSEEEEEEECTTSCEEEEEEEEE-EETTEEEEEEETTSHHHHHHHHSTTSEEEEEECCTTTSSBTTBCCEEEEEEEEEE
T ss_pred             hCCEEEEEeeCcCCCEEEEEEEEE-EECCEEEEEEeCchHHHHHHHhCCCeEEEEEEeCccccCChhhcCeEEEEEEEEE
Confidence            578899999999999999999986 455689999999999999999999 99999976542       367899999999


Q ss_pred             cCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCC---CCCCCCCceEEEEEeceEEEeeecC
Q psy2497         123 TSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEG---DYVPRPKHWGGYVVIPKVIEFWQGQ  197 (331)
Q Consensus       123 ~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~---~~~p~P~~~~~l~v~p~~iEfwq~~  197 (331)
                      +.+++                             ...+..+.+..+|+..   +..-.=+.|.+|+|+|.++-|-.|-
T Consensus       176 v~~~~-----------------------------~~~~~~~~~~~r~p~~~~~~~~~~~~DF~l~rl~p~~~r~v~GF  224 (259)
T 3gas_A          176 IERGA-----------------------------EFDKAFDSFIEKTGGAGGIKTIRAMQDFHLIALDFKEGRFVKGF  224 (259)
T ss_dssp             ECSSH-----------------------------HHHHHHHHHHHHHCSTTTHHHHHTCTTEEEEEEEEEEEEEEEET
T ss_pred             CCCch-----------------------------HHHHHHHHHHHHcCCchhhHhcccCCCeEEEEEEEeEEEEEccc
Confidence            87631                             1111222333444320   0001114699999999999988553

>2vpa_A NIMA-related protein; cofactor, atomic resolution, antibiotic resistance, oxidoreductase; 1.2A {Deinococcus radiodurans} SCOP: b.45.1.1 PDB: 1w3p_A 1w3q_A 1w3r_A* 1w3o_A 2x1k_A 2x1j_A

Probab=98.93  E-value=5.7e-09  Score=94.13  Aligned_cols=80  Identities=18%  Similarity=0.111  Sum_probs=66.4

Q ss_pred             HHHHHHHHHhhcCCCCCCCceEEEEeec----CCCCeeEEEEEEEEeeCCe--EEEEecCCCcchhhhhcCCcEEEEEEe
Q psy2497          34 KLFESWFHEANNTPGIIEANAMFIATST----KNGIPSGRMVLLKSYGKNG--FVFFTNYNSRKGNELAENPQASLAFYW  107 (331)
Q Consensus        34 ~~f~~Wl~~A~~~~~~~e~~~~~LATvd----~dG~P~~R~V~~r~~~~~g--l~F~T~~~S~K~~eL~~np~val~f~~  107 (331)
                      +.+.+.|+         +..+++|||++    ++|.|.+++|.+. ++++.  |||+|...++|+++|++||+|+++|..
T Consensus        46 ~ei~~~L~---------~~~~~~Lat~~~~~~~dg~P~v~Pv~f~-~d~~~~~Lyfhta~~~~K~~~l~~np~V~~~v~~  115 (216)
T 2vpa_A           46 EWIRELLL---------RGTIARVATLWQGEDGAAFPFITPLAYA-YRPEQGDLVYHTNVVGRLRANAGQGHPATLEVSE  115 (216)
T ss_dssp             HHHHHHHH---------HCCEEEEEEEEECTTSCEEEEEEEEECE-EETTTTEEEEECCCCCSSBSSCSSEEEEEEEEEE
T ss_pred             HHHHHHHH---------hCCEEEEEEccCCCCCCCceEEEEEEEE-EECCeeEEEEEecCcCHHHHHhccCCcEEEEEEe
Confidence            44456664         34579999999    7999999999996 45555  999999999999999999999999986


Q ss_pred             CCC-------------CeEEEEEEEEEec
Q psy2497         108 EPL-------------KRSVRIEGHVEKT  123 (331)
Q Consensus       108 ~~~-------------~~qvri~G~a~~~  123 (331)
                      +..             -+.|.|.|+|+++
T Consensus       116 ~~~~v~~~~~~~~t~~y~sV~v~G~a~~v  144 (216)
T 2vpa_A          116 IGQFLPSNSPLELSVQYRSVMVFGTARVL  144 (216)
T ss_dssp             EEEEECCSSGGGCEEEEEEEEEEEEEEEC
T ss_pred             CCeeccCccCCCCcccEEEEEEEEEEEEE
Confidence            542             2669999999987

>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens}

Probab=98.91  E-value=1.4e-08  Score=93.99  Aligned_cols=115  Identities=10%  Similarity=0.083  Sum_probs=83.9

Q ss_pred             CCceEEEEeec-CCCCeeEEEEEEEEeeCC-eEEEEecCCCcchhhhhcCCcEEEEEEeCCC-----CeEEEEEEEEEec
Q psy2497          51 EANAMFIATST-KNGIPSGRMVLLKSYGKN-GFVFFTNYNSRKGNELAENPQASLAFYWEPL-----KRSVRIEGHVEKT  123 (331)
Q Consensus        51 e~~~~~LATvd-~dG~P~~R~V~~r~~~~~-gl~F~T~~~S~K~~eL~~np~val~f~~~~~-----~~qvri~G~a~~~  123 (331)
                      ..+.++|||++ .||.|.+-+|.+- ++.+ .++|++...+.|.++|++||+|+|++..+..     ...|.|.|+++.+
T Consensus        38 ~~~~g~LaTv~~~dG~P~~s~v~y~-~d~~g~~~~~~s~~~~h~~NL~~dprvSl~V~~~~~~d~~~~~rvtl~G~a~~v  116 (258)
T 3dnh_A           38 TSRTAALATLDPVSGYPYTTATNIG-IEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRI  116 (258)
T ss_dssp             HCCEEEEEEECTTTCCEEEEEEECE-ECTTSCEEEEEETTSHHHHHHHHCCEEEEEECCGGGSCGGGSCEEEEEEEEEEC
T ss_pred             hCCEEEEEeccCCCCceEEEEEEEE-ECCCCCEEEEEeCCcHHHHHHhhCCCEEEEEecCCCCChhhCCeEEEEEEEEEc
Confidence            45679999999 9999999999986 5644 4899999999999999999999999997652     3679999999998


Q ss_pred             CCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeec
Q psy2497         124 SDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQG  196 (331)
Q Consensus       124 ~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~  196 (331)
                      .+++.+.                              ..+.+...+++......-++|.+|+|.|+++-|-.+
T Consensus       117 ~~~e~~~------------------------------l~~~y~~rhP~a~~~~~~~df~l~rl~~~~v~~v~G  159 (258)
T 3dnh_A          117 GPDEVPL------------------------------AIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGG  159 (258)
T ss_dssp             CGGGHHH------------------------------HHHHHHHHCTTHHHHTSSTTEEEEEEEEEEEEEEC-
T ss_pred             CchHHHH------------------------------HHHHHHHHCcChHHcccCCCeEEEEEEEeEEEEEcc
Confidence            7653211                              111222223221001112569999999999998854

>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032}

Probab=98.88  E-value=1.6e-08  Score=85.15  Aligned_cols=73  Identities=11%  Similarity=-0.120  Sum_probs=54.6

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeC--CCCeEEEEEEEEEecCCc
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWE--PLKRSVRIEGHVEKTSDK  126 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~--~~~~qvri~G~a~~~~~~  126 (331)
                      ...++.|||++ ||.|++-||.+- ++++.|||+|.. ..|...|++||+||++....  .....|.+.|+|+.+++.
T Consensus        20 ~~~~g~La~~~-dg~P~vvPv~f~-~~~~~iyfh~a~-g~K~~~i~~~~~V~f~vd~~~~~~~~SV~v~G~a~~v~d~   94 (138)
T 3fkh_A           20 SVSLGRVVVRR-SDEMDIFPVNFI-VDKGAIYIRTAE-GNKLFSMNLNHDVLFEADEVKDGKAWSVVVRATAEIVRKL   94 (138)
T ss_dssp             TCSEEEEEEEE-TTEEEEEEEEEE-EETTEEEEEEEC---------CCSEEEEEEEEEETTEEEEEEEEEEEEECCSH
T ss_pred             cCCEEEEEEee-CCEEEEEEEEEE-EECCEEEEEeCC-ChHHHHhhcCCCEEEEEEECCCCCCEEEEEEEEEEEECCH
Confidence            56789999998 999999999985 566789999998 45999999999999999853  234579999999997753

>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum}

Probab=98.87  E-value=2.1e-09  Score=91.40  Aligned_cols=79  Identities=14%  Similarity=0.101  Sum_probs=65.9

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCHH
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDK  277 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~~  277 (331)
                      .|.|+.|.+...           ..+++++.|.|+..|+|.     ++|+.||+||++|+|+. .+||+|+|+|+.+++.
T Consensus        40 dG~P~~rpv~~~-----------~~~~~~l~f~t~~~s~K~-----~~l~~np~V~l~~~~~~-~~~v~i~G~a~~v~d~  102 (150)
T 2ig6_A           40 GDQPRVRPFGAV-----------FEYEGKLYIVSNNTKKCF-----KQMIQNPKVEISGMNKK-GQWIRLTGEVANDDRR  102 (150)
T ss_dssp             TTEEEEEEECCC-----------EEETTEEEEEEETTSHHH-----HHHHHCCEEEEEEECTT-SCEEEEEEEEEECCCH
T ss_pred             CCceEEEEeEEE-----------EEcCCEEEEEeCCCcHHH-----HHHHHCCCEEEEEEcCC-CeEEEEEEEEEEECCH
Confidence            356777876553           124578999999999996     37999999999999999 8999999999999886


Q ss_pred             -HHHHHHhcCCCCcccc
Q psy2497         278 -ESDDYFQSRPYASKIG  293 (331)
Q Consensus       278 -es~~yf~~Rp~~sqi~  293 (331)
                       +.+++|..+|..+++.
T Consensus       103 e~~~~~~~~~p~~~~~~  119 (150)
T 2ig6_A          103 EVKELALEAVPSLKNMY  119 (150)
T ss_dssp             HHHHHHHHHSGGGGGTC
T ss_pred             HHHHHHHHhChHHHHhh
Confidence             4789999999877665

>2qea_A Putative general stress protein 26; structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.46A {Jannaschia SP}

Probab=98.76  E-value=7.9e-09  Score=88.51  Aligned_cols=62  Identities=10%  Similarity=0.053  Sum_probs=52.4

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCCCC--ceEeeecCCCccccccchhHhhCCc-eEEEeecCCCCceEEEEEEeeEc
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDG--WYYERLFPQPKQGIQYLHLKAENPQ-ASLAFYWEPLKRSVRIEGHVEKT  274 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~g--w~f~tl~pS~K~~~~~~~~l~~np~-aal~f~W~~l~RQVri~G~v~~~  274 (331)
                      .+.||.|.+...           ..+++|  +.|+|+..|+|.     ++|+.||+ |||+|+|+...|||+|+|+|+.+
T Consensus        24 dG~P~~rpv~~~-----------~~~~~g~~l~f~t~~~s~K~-----~~l~~np~~v~l~~~~~~~~~~v~v~G~a~~v   87 (160)
T 2qea_A           24 KGQGRLIPMSPQ-----------TDDDAPGAIWFITAKGTDLA-----KGVAAGPQPAQFVVSDDGEGLYADLDGTLERS   87 (160)
T ss_dssp             TTSSCCEEECCB-----------CCTTSCSCEEEEEETTSHHH-----HHTSSSCEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred             CCCeeEEEeeee-----------EecCCCCEEEEEECCCCHHH-----HHHHhCCceEEEEEECCCCCeEEEEEEEEEEE
Confidence            467999998775           233455  999999999996     37999999 99999999999999999999765


Q ss_pred             C
Q psy2497         275 S  275 (331)
Q Consensus       275 ~  275 (331)
                      +
T Consensus        88 ~   88 (160)
T 2qea_A           88 T   88 (160)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV}

Probab=98.71  E-value=3.1e-08  Score=83.69  Aligned_cols=55  Identities=13%  Similarity=0.135  Sum_probs=47.6

Q ss_pred             CCC-ceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCHHH-HHHHH
Q psy2497         224 EDG-WYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKE-SDDYF  283 (331)
Q Consensus       224 ~~g-w~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~~e-s~~yf  283 (331)
                      ++| +.|+|+..|+|.     ++|+.||+|||+|+|+...|||+|+|+|+.+++.+ .+++|
T Consensus        45 ~~g~l~F~T~~~s~K~-----~~l~~np~v~l~~~~~~~~~~v~v~G~a~~~~d~~~~~~~~  101 (147)
T 3dmb_A           45 SGGPIWFFTSKDNALI-----AMLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAVVDRLW  101 (147)
T ss_dssp             SCCCEEEEECTTCTTH-----HHHTTCEEEEEEEECTTSSEEEEEEEEEEECCCHHHHHHHC
T ss_pred             CCceEEEEecCCcHHH-----HHHhhCCeEEEEEEcCCCCeEEEEEEEEEEecCHHHHHHHh
Confidence            345 999999999996     37999999999999999999999999999997654 55555

>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis}

Probab=98.63  E-value=5.9e-08  Score=81.66  Aligned_cols=78  Identities=15%  Similarity=0.186  Sum_probs=64.8

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCC--CceEEEEEEeeEcC
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPL--KRSVRIEGHVEKTS  275 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l--~RQVri~G~v~~~~  275 (331)
                      .+.|+.|.....           ..+++++.|.|...|+|.     ++|..||+||++|+++..  .+||+|+|+|+.++
T Consensus        25 dG~P~~~p~~~~-----------~~~~~~l~f~t~~~s~k~-----~~l~~np~V~l~~~~~~~~~~~~v~i~G~a~~v~   88 (150)
T 2hhz_A           25 YGNPHARHAHIT-----------AANEEGIFFMTSPETHFY-----DQLMGDQRVAMTAISEEGYLIQVVRVEGTARPVE   88 (150)
T ss_dssp             TCCEEEEEEEEE-----------EEETTEEEEEECTTSHHH-----HHHHHCCEEEEEEEECSTTCCEEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEE-----------EEcCCEEEEEecCCCHHH-----HHHhhCCeEEEEEEcCCcceeEEEEEEEEEEECC
Confidence            467888887764           123567999999999996     379999999999999875  49999999999999


Q ss_pred             HHHHHHHHhcCCCCcc
Q psy2497         276 DKESDDYFQSRPYASK  291 (331)
Q Consensus       276 ~~es~~yf~~Rp~~sq  291 (331)
                      +.+..++|..+|...+
T Consensus        89 d~~~~~~~~~~p~~~~  104 (150)
T 2hhz_A           89 NDYLKTVFADNPYYQH  104 (150)
T ss_dssp             HHHHHHHHTTCGGGGG
T ss_pred             cHHHHHHHHhChhhhh
Confidence            9999999988776443

>3u35_A General stress protein; PNP-oxidase like fold, FMN/FAD, protein BI; HET: PGE; 2.50A {Xanthomonas axonopodis PV} PDB: 3u34_A*

Probab=98.43  E-value=3.1e-07  Score=80.71  Aligned_cols=55  Identities=13%  Similarity=0.135  Sum_probs=48.4

Q ss_pred             CCC-ceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCHHH-HHHHH
Q psy2497         224 EDG-WYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKE-SDDYF  283 (331)
Q Consensus       224 ~~g-w~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~~e-s~~yf  283 (331)
                      ++| +.|+|+..|+|. +    +|+.||+|+|+|+|+...++|+|+|+|+.+++.+ .+++|
T Consensus        64 ~~g~l~F~T~~~s~K~-~----~l~~np~v~l~~~~~~~~~~V~v~G~a~vv~D~e~~~~lw  120 (182)
T 3u35_A           64 SGGPIWFFTSKDNALI-A----MLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAMVDRLW  120 (182)
T ss_dssp             SCSCEEEEEETTCGGG-G----GCTTCEEEEEEEECTTSSEEEEEEEEEEECCCHHHHHHHC
T ss_pred             CCCEEEEEECCCCHHH-H----HHHHCCcEEEEEECCCCCeEEEEEEEEEEEcCHHHHHHHH
Confidence            345 999999999996 3    6999999999999999999999999999998765 56665

>2iab_A Hypothetical protein; NP_828636.1, structural genomics, JOIN for structural genomics, JCSG; 2.00A {Streptomyces avermitilis}

Probab=98.38  E-value=2.8e-07  Score=78.31  Aligned_cols=61  Identities=10%  Similarity=-0.062  Sum_probs=53.1

Q ss_pred             CCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCHHH
Q psy2497         199 DRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKE  278 (331)
Q Consensus       199 ~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~~e  278 (331)
                      +.|+.|-+...            .+++++.|+|...|+|.     ++|..||+|||+|+|+  .++|+|+|+|+.+++++
T Consensus        37 G~P~~~pv~~~------------~d~~~l~f~t~~~s~K~-----~~l~~np~Vsl~v~~~--~~~v~v~G~a~~v~d~~   97 (155)
T 2iab_A           37 GAPYLVPLSYL------------WDGETFLVATPAASPTG-----RNLSETGRVRLGIGPT--RDLVLVEGTALPLEPAG   97 (155)
T ss_dssp             SCEEEEEEECE------------ECSSCEEEEEETTSHHH-----HHHHHHCEEEEEESST--TCEEEEEEEEEEECGGG
T ss_pred             CCceEEEEEEE------------EECCEEEEEECCCCHHH-----HHHhhCCcEEEEEEcC--CCEEEEEEEEEEecCch
Confidence            67888888765            46778999999999996     3799999999999999  59999999999998654

>3a6r_A FMN-binding protein; electron transport, flavoprotein; HET: FMN; 1.20A {Desulfovibrio vulgaris} PDB: 1axj_A* 1flm_A* 3awh_A* 3amf_A* 3a6q_A* 1wll_A* 3a20_A* 1wli_A* 1wlk_A* 2e83_A*

Probab=98.36  E-value=7.5e-07  Score=73.41  Aligned_cols=74  Identities=15%  Similarity=0.054  Sum_probs=62.2

Q ss_pred             CceEEEEeecCCCCeeEEEEEE---EEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCC------CCeEEEEEEEEEe
Q psy2497          52 ANAMFIATSTKNGIPSGRMVLL---KSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEP------LKRSVRIEGHVEK  122 (331)
Q Consensus        52 ~~~~~LATvd~dG~P~~R~V~~---r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~------~~~qvri~G~a~~  122 (331)
                      ...+.|||++ ||.|++-+.+.   +-.|++.|++..+.-..-.++|++||+|+|+++..+      .+.-++|+|+|+.
T Consensus        13 ~~~~~iaT~~-~g~Pnvvptw~~~~~v~dD~~ili~~~~~~kT~~Nl~~N~kvai~v~~~e~~g~~g~~~gf~ikGta~~   91 (122)
T 3a6r_A           13 QGVVAIATQG-EDGPHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAF   91 (122)
T ss_dssp             CCEEEEEEEC-SSSEEEEEEEGGGCEEETTTEEEEEESSCHHHHHHHHHCCEEEEEEEEEEEECSSSEEEEEEEEEEEEE
T ss_pred             CCeEEEEEcC-CCCCcEEeeeceEEEEecCCEEEEEccccHHHHHHHhhCCeEEEEEEecccccccCCCceEEEEEEEEE
Confidence            4568899999 99999998433   444556799999999999999999999999999775      5577999999999


Q ss_pred             cCCc
Q psy2497         123 TSDK  126 (331)
Q Consensus       123 ~~~~  126 (331)
                      +++.
T Consensus        92 ~~~G   95 (122)
T 3a6r_A           92 RTDG   95 (122)
T ss_dssp             ESSS
T ss_pred             Eecc
Confidence            8754

>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus}

Probab=98.32  E-value=5.2e-07  Score=73.95  Aligned_cols=64  Identities=14%  Similarity=0.138  Sum_probs=52.4

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcC--CCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcC
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEG--EDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTS  275 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~--~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~  275 (331)
                      .+.|+.|-+...           ..+  ++.+.|+|...|+|.     ++|+.||+|||+|+|+...+||+|+|+|+.++
T Consensus        29 dG~P~~~pv~~~-----------~~~~~~~~l~f~t~~~s~K~-----~~l~~np~v~l~~~~~~~~~~v~v~G~a~~~~   92 (134)
T 2re7_A           29 KGDIHAWPMTTS-----------EVNLDNKEIWFIGDKTSDVV-----KDIQDDARIGLTYATQDEKNYVSISGDAELPT   92 (134)
T ss_dssp             TSCEEEEEECCS-----------EEETTTTEEEEEEETTSHHH-----HHHHHCCEEEEEEECTTSSCEEEEEEEEECCC
T ss_pred             CCCEEEEecEee-----------eecCCCceEEEEECCCCHHH-----HHHhhCCcEEEEEEcCCCCeEEEEEEEEEEEC
Confidence            467888865543           122  456999999999996     36999999999999999999999999999886


Q ss_pred             HH
Q psy2497         276 DK  277 (331)
Q Consensus       276 ~~  277 (331)
                      +.
T Consensus        93 d~   94 (134)
T 2re7_A           93 DK   94 (134)
T ss_dssp             CH
T ss_pred             CH
Confidence            53

>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1

Probab=98.22  E-value=1.8e-06  Score=71.98  Aligned_cols=70  Identities=16%  Similarity=0.191  Sum_probs=56.5

Q ss_pred             CCCccceEEEe-ccCCCCCCCCCCCcC-CCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcC
Q psy2497         198 SDRVHDRIVFK-RPVPGEPLGPHSHEG-EDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTS  275 (331)
Q Consensus       198 ~~r~h~R~~f~-k~~~~~~~~~~~~~~-~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~  275 (331)
                      .+.|+.|.+.. .           ..+ ++.+.|+|...|+|.     ++|.+||+|||+|+|+...+||+|.|+|+.++
T Consensus        33 dG~P~~~pv~~~~-----------~~~~~~~l~f~t~~~s~k~-----~~l~~np~v~l~~~~~~~~~~v~v~G~a~~v~   96 (148)
T 2i02_A           33 DGSLHSYPMSKSG-----------DINSEATLWFFTYAGSHKV-----TEIEHHEQVNVSFSSPEQQRYVSISGTSQLVK   96 (148)
T ss_dssp             TSCEEEEEEECBC-----------C---CCEEEEEEETTSHHH-----HHHHHCCEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred             CCCEEEEEeEeeE-----------EEcCCCeEEEEEcCCCHHH-----HHHHhCCcEEEEEEcCCCCeEEEEEEEEEEEc
Confidence            56788888776 3           123 344999999999996     36999999999999999999999999999998


Q ss_pred             HHHH-HHHH
Q psy2497         276 DKES-DDYF  283 (331)
Q Consensus       276 ~~es-~~yf  283 (331)
                      +.+. ++.|
T Consensus        97 d~~~~~~~~  105 (148)
T 2i02_A           97 DRNKMRELW  105 (148)
T ss_dssp             CHHHHHHHC
T ss_pred             CHHHHHHHH
Confidence            7654 4555

>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1

Probab=98.15  E-value=3e-06  Score=71.89  Aligned_cols=64  Identities=8%  Similarity=-0.021  Sum_probs=51.7

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCC-------CceEEEEEE
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPL-------KRSVRIEGH  270 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l-------~RQVri~G~  270 (331)
                      .|.|+.+.+....           .+++++.|++...|+|.     ++|..||+|||+|.|+..       .++|+|.|+
T Consensus        41 dG~P~~~~v~~~~-----------~~~g~~~f~t~~~s~k~-----~nl~~np~vsl~v~~~~~~~~~~~~~~~v~i~G~  104 (157)
T 1vl7_A           41 QGIPNGSYAPFVI-----------DDAKNIYIYVSGLAVHT-----KNIEANPLVNVLFVDDEAKTNQIFARRRLSFDCT  104 (157)
T ss_dssp             TSCEEEEEEEEEE-----------CTTCCEEEEECTTSHHH-----HHHHHCCEEEEEEECCGGGCSSGGGCCEEEEEEE
T ss_pred             CCCEEEEEEEEEE-----------cCCCCEEEEEeCccHHH-----HHHHhCCcEEEEEEcCccccCCcccCceEEEEEE
Confidence            4678888765540           22367999999999996     379999999999999763       689999999


Q ss_pred             eeEcCHH
Q psy2497         271 VEKTSDK  277 (331)
Q Consensus       271 v~~~~~~  277 (331)
                      |+.++++
T Consensus       105 a~~v~~~  111 (157)
T 1vl7_A          105 ATLIERE  111 (157)
T ss_dssp             EEEECTT
T ss_pred             EEEcCCC
Confidence            9999875

>3in6_A FMN-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FMN; 2.12A {Syntrophomonas wolfei subsp}

Probab=98.06  E-value=6.5e-06  Score=69.80  Aligned_cols=69  Identities=9%  Similarity=0.020  Sum_probs=55.4

Q ss_pred             eEEEEeecCCCCeeEEEEEEEEeeCC-eEEEEecCCCcchhhhhcCCcEEEEEE---eCCCCeEEEEEEEEEe
Q psy2497          54 AMFIATSTKNGIPSGRMVLLKSYGKN-GFVFFTNYNSRKGNELAENPQASLAFY---WEPLKRSVRIEGHVEK  122 (331)
Q Consensus        54 ~~~LATvd~dG~P~~R~V~~r~~~~~-gl~F~T~~~S~K~~eL~~np~val~f~---~~~~~~qvri~G~a~~  122 (331)
                      .++|||+|.||.|.+-++..-.+-++ .|+|.-.....=.+||++||+|+++|+   .+...++.||.++...
T Consensus        32 ~~~LATAdkdG~PNVa~~~~~~~~Dd~tI~iad~f~~kT~~NL~eNP~aav~~~~~~~~~~~KG~Rl~l~~~e  104 (148)
T 3in6_A           32 STTLSTVDRNYEVNIAVISVLEMIGDDTIICARFGADKTYANLKETGKGVFMVLLTDNDKSKDGIRVYVELSA  104 (148)
T ss_dssp             SEEEEEECTTCCEEEEECCCEEEETTTEEEEEESSCHHHHHHHHHHCEEEEEEEEESSSCEEEEEEEEEEEEE
T ss_pred             eEEEEEcCCCCCccEEEEeeeEEecCCEEEEEeccchhHHHHHHhCCcEEEEEEEcCCCCccceEEEEEEEEE
Confidence            58999999999999998886555554 577766666677889999999999999   6666678888876544

>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} SCOP: b.45.1.0

Probab=98.01  E-value=7.6e-06  Score=67.66  Aligned_cols=70  Identities=13%  Similarity=0.130  Sum_probs=56.3

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecC---CCCceEEEEEEeeEc
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWE---PLKRSVRIEGHVEKT  274 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~---~l~RQVri~G~v~~~  274 (331)
                      .+.||.|.+...            .+++.+.|.|...|+|.     ++|++||+|||+|.|.   ...++|+|.|+|+.+
T Consensus        25 dg~P~~~pv~~~------------~~~~~l~f~t~~~s~k~-----~~l~~np~v~l~v~~~~d~~~~~~v~v~G~a~~~   87 (139)
T 3ec6_A           25 NDKPHSAFMMFF------------HEDFVLYVATDRQSKKI-----TDIENNPNVHVLLGREGKKLDEDYIEVEGLASIE   87 (139)
T ss_dssp             TTEEEEEEEECE------------EETTEEEEEEETTCHHH-----HHHHHCCEEEEEECC---CTTCCEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEE------------EeCCEEEEEECCCCHHH-----HHHHhCCcEEEEEEecCCCCCccEEEEEEEEEEE
Confidence            356888877665            35677999999999996     3799999999999653   468999999999999


Q ss_pred             C-HHHHHHHHh
Q psy2497         275 S-DKESDDYFQ  284 (331)
Q Consensus       275 ~-~~es~~yf~  284 (331)
                      . .++.+++|.
T Consensus        88 ~d~~~~~~~~~   98 (139)
T 3ec6_A           88 EDSTLKNKFWN   98 (139)
T ss_dssp             CCHHHHHHHCC
T ss_pred             cCHHHHHHHHH
Confidence            6 467788885

>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua}

Probab=97.98  E-value=1.1e-05  Score=65.54  Aligned_cols=70  Identities=16%  Similarity=0.141  Sum_probs=53.9

Q ss_pred             CCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeec-CCCCceEEEEEEeeEc-CH
Q psy2497         199 DRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYW-EPLKRSVRIEGHVEKT-SD  276 (331)
Q Consensus       199 ~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W-~~l~RQVri~G~v~~~-~~  276 (331)
                      +.|+.|-+...            .+++.+.|.|...|+|. +    +|..||+|||++.+ +...++|+|.|+|+.+ +.
T Consensus        28 g~P~~~pv~~~------------~~~~~l~f~t~~~s~k~-~----~l~~np~v~l~v~~~~~~~~~v~v~G~a~~v~d~   90 (128)
T 3db0_A           28 DFPHARYMTFL------------HDGLTLYTPSGKELPKT-E----EVRRNPHVCVLIGYDSPGSAFLEINGLASLEEDE   90 (128)
T ss_dssp             TEEEEEEEECE------------EETTEEEEEC----CTT-C----CCCCCCEEEEEECCCSTTCCEEEEEEEEEECCCH
T ss_pred             CCEEEEEEEEE------------ecCCEEEEEECCCCHHH-H----HHHhCCceEEEEEEcCCCCcEEEEEEEEEEEcCH
Confidence            56788877655            35667889999999996 3    69999999999877 7788999999999999 46


Q ss_pred             HHHHHHHhc
Q psy2497         277 KESDDYFQS  285 (331)
Q Consensus       277 ~es~~yf~~  285 (331)
                      ++.+++|..
T Consensus        91 ~~~~~~~~~   99 (128)
T 3db0_A           91 SIKERIWEN   99 (128)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            778888864

>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1

Probab=97.90  E-value=1e-05  Score=66.90  Aligned_cols=65  Identities=9%  Similarity=0.076  Sum_probs=52.1

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcC-CCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCH
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEG-EDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSD  276 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~-~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~  276 (331)
                      .+.|+.|-+...           ..+ ++.+.|.|...|+|.     ++|.+||+||++|+++...++|+|.|+|+.+++
T Consensus        29 ~G~P~~~pv~~~-----------~~~~~~~l~f~t~~~s~k~-----~~l~~np~v~l~~~~~~~~~~v~v~G~a~~v~d   92 (146)
T 2hq7_A           29 NGYPNIKAMMRL-----------KHDGLKKFWLSTNTSTRMV-----ERLKKNNKICLYFVDDNKFAGLMLVGTIEILHD   92 (146)
T ss_dssp             GGCEEEEEEEEE-----------EEETTTEEEEEEECCHHHH-----HHHHHCCEEEEEEECSSSSEEEEEEEEEEEECC
T ss_pred             CCCEEEEEEEEE-----------EEcCCCEEEEEecCCCHHH-----HHHhhCCeEEEEEECCCCceEEEEEEEEEEEcC
Confidence            355777766554           012 256889999999996     369999999999999999999999999999976


Q ss_pred             HH
Q psy2497         277 KE  278 (331)
Q Consensus       277 ~e  278 (331)
                      .+
T Consensus        93 ~~   94 (146)
T 2hq7_A           93 RA   94 (146)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis}

Probab=97.73  E-value=2.1e-05  Score=64.25  Aligned_cols=62  Identities=11%  Similarity=0.065  Sum_probs=50.0

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCC-CceEEEEEEeeEcCH
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPL-KRSVRIEGHVEKTSD  276 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l-~RQVri~G~v~~~~~  276 (331)
                      .|.|+.+-+...            .+++.+.|.+...|+|.     +.|.+||+||++|.++.- .++|+|+|+++.+++
T Consensus        26 dG~P~~~pv~~~------------~d~~~l~f~t~~~s~k~-----~~l~~np~v~l~v~~~~~~~~~v~v~G~a~~v~~   88 (131)
T 3f7e_A           26 DGTPQVNAMWFA------------WDGEVLRFTHTTKRQKY-----RNIKANPAVAMSVIDPDNPYRYLEVRGLVEDIVP   88 (131)
T ss_dssp             TSCEEEEEECCE------------ECSSCEEEEEETTSHHH-----HHHHHCCEEEEEEECSSCTTCEEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEE------------EECCEEEEEECCCCHHH-----HHHhhCCcEEEEEEcCCCCeeEEEEEEEEEEecc
Confidence            456776655443            34567899999999995     379999999999999874 799999999998875

>2htd_A Predicted flavin-nucleotide-binding protein from family structurally related to pyridoxine...; putative pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A {Lactobacillus delbrueckii subsp}

Probab=97.71  E-value=3.3e-05  Score=64.42  Aligned_cols=56  Identities=13%  Similarity=0.039  Sum_probs=47.3

Q ss_pred             CCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCHHHHHHHH
Q psy2497         223 GEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYF  283 (331)
Q Consensus       223 ~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~~es~~yf  283 (331)
                      +++.+.|.+...++|.     ++|.+||+|||+|+|+...++|||.|+|+.+++.+--+-+
T Consensus        64 d~~~l~f~~~~~~~k~-----~nL~~np~V~l~~~~~~~~~~v~i~G~a~~v~d~~~~~~l  119 (140)
T 2htd_A           64 DPSHLQYLEKTKGEAY-----ENIKRGSKVALVAADVPSHTAVRVLATAEVHEDDDYAKKV  119 (140)
T ss_dssp             ETTEEEEEESSCCHHH-----HHHHTTCCEEEEEEETTTTEEEEEEEEEEEESSSHHHHHH
T ss_pred             CCCEEEEeccCCchHH-----HHhhcCCeEEEEEEecCCCCEEEEEEEEEEecChHHHHHH
Confidence            4567888888888885     3799999999999999999999999999998876554444

>2ol5_A PAI 2 protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Geobacillus stearothermophilus}

Probab=97.66  E-value=0.0014  Score=57.99  Aligned_cols=71  Identities=11%  Similarity=0.011  Sum_probs=55.9

Q ss_pred             CceEEEEeecCCCCeeEEEEEEEEeeCC--eEEEEecCCCcchhhhhcCCcEEEEEEeCCC-----------------Ce
Q psy2497          52 ANAMFIATSTKNGIPSGRMVLLKSYGKN--GFVFFTNYNSRKGNELAENPQASLAFYWEPL-----------------KR  112 (331)
Q Consensus        52 ~~~~~LATvd~dG~P~~R~V~~r~~~~~--gl~F~T~~~S~K~~eL~~np~val~f~~~~~-----------------~~  112 (331)
                      ..+++|+|++ +|.|.+-++.+-- +++  .||||.....+|.+.|.. ++|+++|.-+..                 -+
T Consensus        22 ~~~g~L~~~~-~~~py~~plpf~~-~~~~~~Ly~H~A~~n~k~~~l~~-~~V~~~~~g~~~yisps~y~~~~~vpT~nY~   98 (202)
T 2ol5_A           22 NSFATLVSMH-QRELFATHLPLLL-DREKTCLYGHFARSNPQWNDIQH-QTVLAIFHGPHCYISPSWYETNQAVPTWNYV   98 (202)
T ss_dssp             SCEEEEEEEE-TTEEEEEEEECEE-CTTSSEEEEEEETTSGGGGGCTT-SCEEEEEEEEEEEECGGGSSCSCCCCEEEEE
T ss_pred             CCEEEEEEcc-CCccEEEEeeEEE-ECCCCEEEEEECCcChHHHhhCC-CCEEEEEEcCCEEechhhcccCCCCCCcceE
Confidence            4568999998 5679999888853 455  699999999999999999 999998874321                 14


Q ss_pred             EEEEEEEEEecCC
Q psy2497         113 SVRIEGHVEKTSD  125 (331)
Q Consensus       113 qvri~G~a~~~~~  125 (331)
                      -|.+.|++++++|
T Consensus        99 SV~~~G~~~~v~D  111 (202)
T 2ol5_A           99 AVHVYGNVELIND  111 (202)
T ss_dssp             EEEEEEEEEECCC
T ss_pred             EEEEEEEEEEECC
Confidence            5777888888764

>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1

Probab=97.54  E-value=7.5e-05  Score=61.22  Aligned_cols=68  Identities=19%  Similarity=0.122  Sum_probs=52.7

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCC-CCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCH
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGE-DGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSD  276 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~-~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~  276 (331)
                      .+.|+.+-+...           ..++ +.+.|.+...|+|.     +.|.+||+||++|+++.  ++|+|.|+++.+++
T Consensus        31 ~G~P~~~pv~~~-----------~~~~~~~l~f~t~~~s~k~-----~~l~~np~v~l~~~~~~--~~v~v~G~a~~v~d   92 (141)
T 2fhq_A           31 EGYPRPVPMSKI-----------AAEGISTIWMSTGADSLKT-----IDFLSNPKAGLCFQEKG--DSVALMGEVEVVTD   92 (141)
T ss_dssp             TSCEEEEEEECC-----------EEETTTEEEEEEETTSHHH-----HHHHHCCEEEEEEEETT--EEEEEEEEEEEECC
T ss_pred             CCCEEEEeeEEE-----------EeCCCCeEEEEeCCCCHHH-----HHHHhCCcEEEEEEeCC--CEEEEEEEEEEECC
Confidence            466887776643           0122 56889999999995     37999999999999996  89999999999987


Q ss_pred             H-HHHHHH
Q psy2497         277 K-ESDDYF  283 (331)
Q Consensus       277 ~-es~~yf  283 (331)
                      . +-++.|
T Consensus        93 ~~~~~~~~  100 (141)
T 2fhq_A           93 EKLKQELW  100 (141)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHHHH
Confidence            4 445544

>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1}

Probab=97.44  E-value=0.00045  Score=58.37  Aligned_cols=77  Identities=13%  Similarity=0.189  Sum_probs=58.9

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCC---CceEEEE-EEeeE
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPL---KRSVRIE-GHVEK  273 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l---~RQVri~-G~v~~  273 (331)
                      .+.|+.|..-...         -..+++.+.|.|...|.|-     ++|.+||+||++.+=+.-   ..||||+ |.|+.
T Consensus        24 ~g~P~vR~v~f~~---------~~~~~~~LYF~T~~~k~k~-----~ql~~Np~V~i~~~~~d~~~~~~~IRi~~G~a~~   89 (145)
T 3ba3_A           24 NNEADVKIVNFVW---------YEAQPDTLYFSSVKTSPAL-----KVYDQNPDIAFITIPNDGTAGNPYLRAQHVKLQR   89 (145)
T ss_dssp             TTEEEEEEEECEE---------CTTSTTEEEEEEETTCTHH-----HHHTTCCEEEEEEEECTTCTTCCEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE---------EecCCCEEEEEECCCCHHH-----HHHHhCCCEEEEEECCCCCccceEEEEEeEEEEE
Confidence            3568888764320         0124678999999999996     379999999999775555   5999999 99999


Q ss_pred             cC---HHHHHHHHhcCCC
Q psy2497         274 TS---DKESDDYFQSRPY  288 (331)
Q Consensus       274 ~~---~~es~~yf~~Rp~  288 (331)
                      .+   .+-.+.+|..-|.
T Consensus        90 ~~~~~~~~k~~~~e~~P~  107 (145)
T 3ba3_A           90 STKTMTDLLPQYLETVPN  107 (145)
T ss_dssp             CSCCHHHHHHHHHHHSTT
T ss_pred             cCCchHHHHHHHHHhChh
Confidence            88   4677788876664

>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*

Probab=97.32  E-value=0.00097  Score=54.69  Aligned_cols=75  Identities=15%  Similarity=0.235  Sum_probs=59.3

Q ss_pred             CceEEEEeecC-CCCeeEEEEEEEEeeCCeEEEEecC-----CCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCC
Q psy2497          52 ANAMFIATSTK-NGIPSGRMVLLKSYGKNGFVFFTNY-----NSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSD  125 (331)
Q Consensus        52 ~~~~~LATvd~-dG~P~~R~V~~r~~~~~gl~F~T~~-----~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~  125 (331)
                      ..++.|+|++. +|.|+.-+|.+.. +++++++..+.     ++..++||.+||.|.|...    .  -+..++|+++++
T Consensus        15 ~p~~~Ltt~GRkSG~pr~tPv~~~~-~g~~~~vvas~~G~~~~p~W~~Nl~A~P~v~v~~~----~--~~~~~~A~~l~~   87 (122)
T 3r5l_A           15 IPVALLTTTGRKTGQPRVNPLYFLR-DGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIK----K--EVLDLTARDATD   87 (122)
T ss_dssp             CCCEEEEEECTTTCSEEEEEEEEEE-ETTEEEEECSCCGGGCSCHHHHHHHHCCEEEEEET----T--EEEEEEEEECCH
T ss_pred             CcEEEEEEcCCCCCCEEEEEEEEEE-ECCEEEEEEecCCCCCCCHHHHhhccCCcEEEEEC----C--EEEEEEEEECCc
Confidence            46789999997 7999999998864 55677776542     4677999999999999873    1  268899999988


Q ss_pred             cchhHHHh
Q psy2497         126 KESDDYFQ  133 (331)
Q Consensus       126 ~~~~~~~~  133 (331)
                      ++.++.|.
T Consensus        88 ~Er~~~~~   95 (122)
T 3r5l_A           88 EERAEYWP   95 (122)
T ss_dssp             HHHHHHHH
T ss_pred             chHHHHHH
Confidence            88777774

>2asf_A Hypothetical protein RV2074; H37RV, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: CIT; 1.60A {Mycobacterium tuberculosis} SCOP: b.45.1.1

Probab=97.24  E-value=0.00025  Score=58.23  Aligned_cols=61  Identities=16%  Similarity=-0.094  Sum_probs=48.4

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcC--CCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcC
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEG--EDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTS  275 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~--~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~  275 (331)
                      .|.||.+-+...            .+  ++.+.|.|...|+|.     +.|..||+|||+|+++  .+.|+|.|+++.++
T Consensus        32 dG~P~~~pv~~~------------~~~~~~~l~f~t~~~s~k~-----~~l~~np~V~l~~~~~--~~~v~v~G~a~~~~   92 (137)
T 2asf_A           32 DNSPHVVAVGFT------------FDPKTHIARVITTGGSQKA-----VNADRSGLAVLSQVDG--ARWLSLEGRAAVNS   92 (137)
T ss_dssp             TSCEEEEEECCE------------EETTTTEEEEEEETTCHHH-----HHHHHHCEEEEEEEET--TEEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEE------------EECCCCEEEEEeCCCCHHH-----HHHhhCCeEEEEEECC--CCEEEEEEEEEEec
Confidence            456777766443            22  256899999999996     3699999999999987  49999999999997


Q ss_pred             HH
Q psy2497         276 DK  277 (331)
Q Consensus       276 ~~  277 (331)
                      +.
T Consensus        93 d~   94 (137)
T 2asf_A           93 DI   94 (137)
T ss_dssp             CH
T ss_pred             CH
Confidence            54

>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A*

Probab=97.12  E-value=0.00068  Score=55.75  Aligned_cols=63  Identities=16%  Similarity=-0.019  Sum_probs=48.8

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCCC--CceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcC
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGED--GWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTS  275 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~--gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~  275 (331)
                      .+.|+.+-+...            .+++  .+.|.+...|+|.     +.|.+||+|+++|..+.-.++|+|.|+|+.++
T Consensus        28 ~G~P~~~pv~~~------------~~~~~~~l~~~t~~~~~k~-----~~l~~np~v~l~~~~~~~~~~v~v~G~a~~~~   90 (147)
T 2aq6_A           28 DGRPQLSNVQYH------------FDPRKLLIQVSIAEPRAKT-----RNLRRDPRASILVDADDGWSYAVAEGTAQLTP   90 (147)
T ss_dssp             TSCEEEEEEECE------------EETTTTEEEEEEETTSHHH-----HHHHHCCEEEEEEECTTSSCEEEEEEECEECC
T ss_pred             CCCEEEEEEEEE------------EcCCCCEEEEEecCCCHHH-----HHHhhCCcEEEEEEcCCCcEEEEEEEEEEEcC
Confidence            456777665543            2333  4678888889995     36999999999999877668999999999998


Q ss_pred             HH
Q psy2497         276 DK  277 (331)
Q Consensus       276 ~~  277 (331)
                      +.
T Consensus        91 d~   92 (147)
T 2aq6_A           91 PA   92 (147)
T ss_dssp             CC
T ss_pred             CC
Confidence            73

>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1

Probab=96.85  E-value=0.0017  Score=54.29  Aligned_cols=64  Identities=17%  Similarity=0.129  Sum_probs=49.1

Q ss_pred             CCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCC---CceEEEEEEeeEc
Q psy2497         198 SDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPL---KRSVRIEGHVEKT  274 (331)
Q Consensus       198 ~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l---~RQVri~G~v~~~  274 (331)
                      .+.|+.+-+...            .+++.+.|.+...|+|.     +.|.+||+|+++|.-+..   .+.|+|.|+|+.+
T Consensus        33 ~G~P~~~pv~~~------------~~~~~l~~~t~~~~~k~-----~~l~~np~v~l~~~~~~~~~~~~~v~~~G~a~~v   95 (162)
T 1rfe_A           33 DGQPHLTAMWYA------------VIDGEIWLETKAKSQKA-----VNLRRDPRVSFLLEDGDTYDTLRGVSFEGVAEIV   95 (162)
T ss_dssp             TSCEEEEEECCE------------EETTEEEEEEETTSHHH-----HHHHHCCEEEEEEEECSSGGGCEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEE------------EECCEEEEEecCccHHH-----HHHhhCCeEEEEEEcCCCcccccEEEEEEEEEEe
Confidence            456777666443            34567889998889995     379999999999975543   3789999999999


Q ss_pred             CHHH
Q psy2497         275 SDKE  278 (331)
Q Consensus       275 ~~~e  278 (331)
                      ++++
T Consensus        96 ~d~~   99 (162)
T 1rfe_A           96 EEPE   99 (162)
T ss_dssp             CCHH
T ss_pred             CChH
Confidence            8753

>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1

Probab=95.08  E-value=0.052  Score=48.78  Aligned_cols=73  Identities=11%  Similarity=0.116  Sum_probs=52.4

Q ss_pred             CCCccceEE-EeccCCCCCCCCCCCcCCCC-ceEeeecCCCccccccchhHhhCCceEEEeecCCC-----CceEEEEEE
Q psy2497         198 SDRVHDRIV-FKRPVPGEPLGPHSHEGEDG-WYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPL-----KRSVRIEGH  270 (331)
Q Consensus       198 ~~r~h~R~~-f~k~~~~~~~~~~~~~~~~g-w~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l-----~RQVri~G~  270 (331)
                      .|.|+...+ |..             +++| .+|.+...|+|.     +.|..||+|||++.-+.-     .+-|+|.|+
T Consensus        32 dG~P~~s~v~~~~-------------d~~g~~~f~~s~~s~k~-----~nl~~nprvsl~v~~~~~~~~~~~~~v~l~G~   93 (247)
T 2arz_A           32 PGFPFGSVVPYCL-------------DAEGRPLILISRIAQHT-----HNLQADPRCSMLVGERGAEDIQAVGRLTLLAE   93 (247)
T ss_dssp             TTCEEEEEEECEE-------------CTTSCEEEEEETTSHHH-----HHHHHCCEEEEEEECTTCSSTTSSCEEEEEEE
T ss_pred             CCcceEEEEEEEE-------------CCCCCEEEEEeChhHHH-----HHHHhCCCeEEEEecCCCCChhhCceEEEEEE
Confidence            466777665 333             3344 888888889995     379999999999986542     246999999


Q ss_pred             eeEcCHHH----HHHHHhcCCC
Q psy2497         271 VEKTSDKE----SDDYFQSRPY  288 (331)
Q Consensus       271 v~~~~~~e----s~~yf~~Rp~  288 (331)
                      ++.+++++    .+.|+..-|.
T Consensus        94 a~~v~d~e~~~~~~~~~~~~P~  115 (247)
T 2arz_A           94 ARQLAEEEVAAAAERYYRYFPE  115 (247)
T ss_dssp             EEECCHHHHHHHHHHHHHHCGG
T ss_pred             EEECCcHHHHHHHHHHHHHCcC
Confidence            99999753    4455554453

>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str}

Probab=94.93  E-value=0.064  Score=44.97  Aligned_cols=76  Identities=11%  Similarity=0.115  Sum_probs=59.3

Q ss_pred             CceEEEEeecC-CCCeeEEEEEEEEeeC--CeEEEE-ec----CCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEec
Q psy2497          52 ANAMFIATSTK-NGIPSGRMVLLKSYGK--NGFVFF-TN----YNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKT  123 (331)
Q Consensus        52 ~~~~~LATvd~-dG~P~~R~V~~r~~~~--~gl~F~-T~----~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~  123 (331)
                      ...+.|.|++. .|.|+.-+|.+...+.  +.+++. +.    .++.-+.||.+||.|.|...    .  -+..++|+++
T Consensus        30 ~~~llLtt~GRkSG~~r~tPl~~~~~g~~~~~~~vvas~gG~~~~p~W~~Nl~A~p~v~v~~g----~--~~~~~~A~~~  103 (143)
T 3h96_A           30 APMVLVHHVGRKTGKAAVTPMMYLPSDDDPGTIYVFASKAGAASNPAWYYNLTTAGTAQVEVG----T--ETYAVGVTEV  103 (143)
T ss_dssp             SCEEEEEEECTTTCCEEEEEEECEECSSCTTEEEEECCGGGCSSCCHHHHHHHHHSEEEEEET----T--EEEEEEEEEE
T ss_pred             CcEEEEEEcCCCCCCEEEEEEEEEEecCcCCcEEEEEcCCCCCCCChHHHhhhhCCcEEEEEC----C--EEEEEEEEec
Confidence            46789999986 6999999998865442  566665 43    36888999999999999763    1  2578899999


Q ss_pred             CCcchhHHHh
Q psy2497         124 SDKESDDYFQ  133 (331)
Q Consensus       124 ~~~~~~~~~~  133 (331)
                      +++|.++.|.
T Consensus       104 ~~~Er~~~~~  113 (143)
T 3h96_A          104 TGEDRDRIYS  113 (143)
T ss_dssp             CHHHHHHHHH
T ss_pred             CchHHHHHHH
Confidence            9998888885

>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica}

Probab=94.89  E-value=0.047  Score=46.01  Aligned_cols=75  Identities=11%  Similarity=0.141  Sum_probs=58.1

Q ss_pred             CceEEEEeecC-CCCeeEEEEEEEEeeCCeEEEEecC-----CCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCC
Q psy2497          52 ANAMFIATSTK-NGIPSGRMVLLKSYGKNGFVFFTNY-----NSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSD  125 (331)
Q Consensus        52 ~~~~~LATvd~-dG~P~~R~V~~r~~~~~gl~F~T~~-----~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~  125 (331)
                      ..++.|.|++. .|.|+.-+|.+.. +++.+++..+.     ++.-+.||.+||.|.|..-    .  -+..++|+++++
T Consensus        39 ~p~~lLtt~GRkSG~~r~tPl~~~~-~~g~~~vVas~gG~~~~p~W~~Nl~A~p~v~v~~g----~--~~~~~~Ar~~~~  111 (147)
T 3r5y_A           39 RPLVILTTVGRKTGALRKTPVMRVE-HDGRYAVVASQGGAPTHPAWYFNLVADPRAQLRDK----D--AVLSVVARELAG  111 (147)
T ss_dssp             EEEEEEEEECTTTCCEEEEEEECCE-ETTEEEEECCGGGCSSCCHHHHHHHHCCEEEEEET----T--EEEEEEEEECCH
T ss_pred             ccEEEEEEcCCCCCCEEEEEEEEEE-ECCEEEEEEcCCCCCCCChHHHhhhhCCcEEEEEC----C--EEEEEEEEECCc
Confidence            45689999986 6999999988754 34566655433     5688999999999999762    1  257889999999


Q ss_pred             cchhHHHh
Q psy2497         126 KESDDYFQ  133 (331)
Q Consensus       126 ~~~~~~~~  133 (331)
                      ++.++.|.
T Consensus       112 ~Er~~~w~  119 (147)
T 3r5y_A          112 PERAEWWE  119 (147)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            98888885

>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum}

Probab=94.87  E-value=0.033  Score=46.78  Aligned_cols=49  Identities=10%  Similarity=0.059  Sum_probs=41.3

Q ss_pred             CCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCHHH
Q psy2497         223 GEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKE  278 (331)
Q Consensus       223 ~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~~e  278 (331)
                      +++...|.+...|+|.     ++|..||+|+++|.-+.  .-++|.|+|+.+.+.+
T Consensus        48 d~~~l~f~~~~~~~k~-----~nl~~np~Vsl~v~~~~--~~~~i~G~A~~v~d~~   96 (151)
T 2q9k_A           48 DETTIRFAIEADSLLV-----KTLADHPVFTLIFFADQ--STYSLTCTDVAAWETT   96 (151)
T ss_dssp             ETTEEEEEEETTCTHH-----HHHHHSCCEEEEEEETT--EEEEEEEEEEEEECCS
T ss_pred             CCCEEEEEECCCcHHH-----HHHHhCCcEEEEEECCC--CEEEEEEEEEEEeCcc
Confidence            5677999999999995     37999999999998663  5799999999887754

>2hq9_A MLL6688 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FAD; 1.95A {Mesorhizobium loti} SCOP: b.45.1.1

Probab=94.76  E-value=0.025  Score=46.72  Aligned_cols=50  Identities=22%  Similarity=0.212  Sum_probs=37.7

Q ss_pred             CCCCceEeeecCCCccccccchhHhhCCceEEEeecCC---CCceEEEEEEeeEcCHHH
Q psy2497         223 GEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEP---LKRSVRIEGHVEKTSDKE  278 (331)
Q Consensus       223 ~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~---l~RQVri~G~v~~~~~~e  278 (331)
                      +++...|.+ ..++|.     +.|..||+||++|.=+.   --+.|.|.|+|+.+++.+
T Consensus        42 ~~~~l~~~t-~~~~k~-----~~l~~~p~V~~~v~~~~~~~~y~sV~v~G~a~~v~d~~   94 (149)
T 2hq9_A           42 SDAHLYAFS-MPGKKI-----EWMRANPRVSVQVDEHGQGRGWKSVVVDGRYEELPDLI   94 (149)
T ss_dssp             ETTEEEEEE-CSSHHH-----HHHHHCCEEEEEEEEECSTTCEEEEEEEEEEEECCSCG
T ss_pred             ECCEEEEEe-CccHHH-----HHHhcCCcEEEEEEecCCCCcEEEEEEEEEEEEEcCcc
Confidence            344566777 578885     36999999999997432   237799999999997643

>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica}

Probab=94.73  E-value=0.078  Score=44.56  Aligned_cols=75  Identities=7%  Similarity=0.076  Sum_probs=57.4

Q ss_pred             CceEEEEeecC-CCCeeEEEEEEEEeeCCeEEEEecC-----CCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCC
Q psy2497          52 ANAMFIATSTK-NGIPSGRMVLLKSYGKNGFVFFTNY-----NSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSD  125 (331)
Q Consensus        52 ~~~~~LATvd~-dG~P~~R~V~~r~~~~~gl~F~T~~-----~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~  125 (331)
                      ..++.|.|++. .|.|+.-+|.+.. +++++++..+.     ++.=+.||.+||.|.|..-    .  -+..++|+++++
T Consensus        37 ~p~~lLtt~GRkSG~~r~tPl~~~~-~~~~~~vVas~gG~~~~p~W~~Nl~A~p~v~v~~g----~--~~~~~~Ar~~~~  109 (145)
T 3r5z_A           37 KPVVVLTTKGAKTGKLRKTPLMRVE-HNGEYAVVASLGGAPKHPVWYHNIKAEPHVELRDG----T--EVGDYTAREVTG  109 (145)
T ss_dssp             EEEEEEEEECTTTCCEEEEEEECEE-ETTEEEEECCBTTBSSCCHHHHHHHHCCEEEEEET----T--EEEEEEEEECCH
T ss_pred             ceEEEEEEcCCCCCCEEEEEEEEEE-ECCEEEEEEcCCCCCCCChHHHHhhhCCcEEEEEC----C--EEEEEEEEECCc
Confidence            35689999986 5999999988764 34566655443     4567899999999999763    1  257788999999


Q ss_pred             cchhHHHh
Q psy2497         126 KESDDYFQ  133 (331)
Q Consensus       126 ~~~~~~~~  133 (331)
                      +|.++.|.
T Consensus       110 ~Er~~~w~  117 (145)
T 3r5z_A          110 EEKRVWWE  117 (145)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            98888885

>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}

Probab=94.73  E-value=0.03  Score=46.73  Aligned_cols=49  Identities=10%  Similarity=0.180  Sum_probs=39.8

Q ss_pred             CCCCceEeeecCCCccccccchhHhhCCceEEEeecCCC-------CceEEEEEEeeEcCH
Q psy2497         223 GEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPL-------KRSVRIEGHVEKTSD  276 (331)
Q Consensus       223 ~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l-------~RQVri~G~v~~~~~  276 (331)
                      +++++.|++..-|+|.     +.|..||+|||++.-++-       ..-|.+.|.|+.+++
T Consensus        38 ~~~~~~~~~s~~~~~~-----~nl~~~prvsl~v~~~~~~~~~~~~~~rltl~G~a~~v~~   93 (148)
T 3tgv_A           38 NQEGYFVLISHIARHA-----RNLEVNPQVSIMMIEDETEAKQLFARKRLTFDAVASMVER   93 (148)
T ss_dssp             ETTEEEEEEETTSHHH-----HHHHHSCEEEEEEECCGGGCSCGGGCCEEEEEEEEEEECT
T ss_pred             ECCEEEEEECCccHHH-----HHHHhCCCeEEEEecCcccccCcccceEEEEeeeEEEcCC
Confidence            5677888888889996     379999999999975432       245999999999975

>3cp3_A Uncharacterized protein; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}

Probab=94.44  E-value=0.045  Score=45.21  Aligned_cols=55  Identities=15%  Similarity=0.035  Sum_probs=38.8

Q ss_pred             CCceEeeecCCCccccccchhHhhCCceEEEeecC--CCCceEEEEEEeeEcCHHH-HHHHHhc
Q psy2497         225 DGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWE--PLKRSVRIEGHVEKTSDKE-SDDYFQS  285 (331)
Q Consensus       225 ~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~--~l~RQVri~G~v~~~~~~e-s~~yf~~  285 (331)
                      +.+.|.+. .++|. .    .|..||+||+++.-.  .-.+.|+|.|+++.+++.+ -.+.+..
T Consensus        56 ~~lyf~ta-~~~K~-~----~l~~np~V~~~v~~~~~~~~~sV~v~G~a~~v~d~~e~~~~l~~  113 (148)
T 3cp3_A           56 PRVYFRTA-EGTKL-F----SVNLNSDVLFEVDRFDDAEGWSVVLKGNAYVVRDTEEARHADTL  113 (148)
T ss_dssp             CEEEEEEC---CCS-S----CTTSCSEEEEEEEECC--CEEEEEEEEEEEECCCHHHHHHHTTS
T ss_pred             CEEEEEcC-CCchH-H----HHhcCCcEEEEEEECCCCCCeEEEEEEEEEEECCHHHHHHHHhc
Confidence            34666776 89995 2    599999999999763  3356899999999998754 5555543

>3u5w_A Putative uncharacterized protein; ssgcid, seattle structural genomics center for infectious DI FMN-binding protein; 2.05A {Brucella melitensis biovar abortus} SCOP: b.45.1.0 PDB: 3u0i_A

Probab=94.12  E-value=0.07  Score=44.36  Aligned_cols=49  Identities=14%  Similarity=0.179  Sum_probs=37.7

Q ss_pred             CCCCceEeeecCCCccccccchhHhhCCceEEEee---cCCCCceEEEEEEeeEcCHH
Q psy2497         223 GEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFY---WEPLKRSVRIEGHVEKTSDK  277 (331)
Q Consensus       223 ~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~---W~~l~RQVri~G~v~~~~~~  277 (331)
                      +++...|.+ ..++|.     +.|..||+||+++.   +..--|.|.|.|+|+.+.+.
T Consensus        45 ~~~~ly~~~-~~g~K~-----~~l~~np~V~~~v~~~~~~~~y~sV~v~G~a~~v~d~   96 (148)
T 3u5w_A           45 SGGSFYSFT-TDGQKT-----NAMRKNDAICILFDQIESQTKWRTVLVQGRYREIARE   96 (148)
T ss_dssp             ETTEEEEEE-CCHHHH-----HHHHHCCEEEEEEEEESSSSSEEEEEEEEEEEECCGG
T ss_pred             ECCEEEEEE-CCchhH-----HHHhcCCcEEEEEEecCCCCcEEEEEEEEEEEEeCCH
Confidence            345566777 568884     36999999999997   33344789999999999874

>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1

Probab=93.97  E-value=0.12  Score=44.49  Aligned_cols=59  Identities=22%  Similarity=0.197  Sum_probs=45.1

Q ss_pred             CCceEeeecCCCccccccchhHhhCCceEEEeecCC------------C--CceEEEEEEeeEcCHHH----HHHHHhcC
Q psy2497         225 DGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEP------------L--KRSVRIEGHVEKTSDKE----SDDYFQSR  286 (331)
Q Consensus       225 ~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~------------l--~RQVri~G~v~~~~~~e----s~~yf~~R  286 (331)
                      +...|.+..-++|.     +.|..||+|||++.++.            -  ..-|.+.|+|+.++++|    ...|+..-
T Consensus        65 g~~~f~~s~~~~~~-----~nl~~nprvSl~v~~~~~~~~~~~~~dp~~~~~~rvtl~G~a~~v~d~e~~~~~~~~~~~h  139 (184)
T 1xhn_A           65 GVPYFYLSPLQLSV-----SNLQENPYATLTMTLAQTNFCKKHGFDPQSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRH  139 (184)
T ss_dssp             SCCEEEECTTSHHH-----HHHHHCCEEEEEEEGGGTTHHHHHTCCTTSTTSCEEEEEEEEEECCGGGHHHHHHHHHHHC
T ss_pred             CCEEEEEeCccHhH-----HHHhhCCCEEEEEecCCCccccccCCCCccccCceEEEEEEEEECChHHHHHHHHHHHHHC
Confidence            45777877778885     37999999999999753            1  56799999999999843    34677655


Q ss_pred             CC
Q psy2497         287 PY  288 (331)
Q Consensus       287 p~  288 (331)
                      |.
T Consensus       140 P~  141 (184)
T 1xhn_A          140 PE  141 (184)
T ss_dssp             GG
T ss_pred             cC
Confidence            53

>2fg9_A 5-nitroimidazole antibiotic resistance protein; STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: FAD; 2.20A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1

Probab=93.33  E-value=0.11  Score=44.40  Aligned_cols=49  Identities=20%  Similarity=0.171  Sum_probs=38.5

Q ss_pred             CCCceEeeecCCCccccccchhHhhCCceEEEeecCC---------------CCceEEEEEEeeEcCHH
Q psy2497         224 EDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEP---------------LKRSVRIEGHVEKTSDK  277 (331)
Q Consensus       224 ~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~---------------l~RQVri~G~v~~~~~~  277 (331)
                      ++...|.+...++|.     +.|..||+||++|.=+.               -.+.|.|.|+|+.+++.
T Consensus        63 ~~~lyfhta~~~~k~-----~~l~~np~V~~~v~~~~~~is~~~~~~~~~t~~y~sV~v~G~a~~v~d~  126 (178)
T 2fg9_A           63 NDTLYLHSGPEGGKI-----EMLQRNNNVCITFSLGHKLVYQHKQVACSYSMRSESAMCRGKVEFIEDM  126 (178)
T ss_dssp             TTEEEEEECSCSHHH-----HHHHHCCEEEEEEECCCEEEEEC----CEEEEEEEEEEEEEECEEECSH
T ss_pred             CCEEEEEcCCcchHH-----HHhhcCCcEEEEEEeCCceeeccCCCCCCCcccEEEEEEEEEEEEECCH
Confidence            345677777788995     36999999999997543               15789999999999775

>2hti_A BH0577 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, FMN-binding protein; HET: FAD; 2.50A {Bacillus halodurans} SCOP: b.45.1.1

Probab=92.44  E-value=0.18  Score=43.21  Aligned_cols=49  Identities=20%  Similarity=0.220  Sum_probs=38.7

Q ss_pred             CCCceEeeecCCCccccccchhHhhCCceEEEeecC----C---------CCceEEEEEEeeEcCHH
Q psy2497         224 EDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWE----P---------LKRSVRIEGHVEKTSDK  277 (331)
Q Consensus       224 ~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~----~---------l~RQVri~G~v~~~~~~  277 (331)
                      ++.+.|.+...++|.     +.|..||+||++|.=+    .         -.+.|.|.|+|+.+++.
T Consensus        49 ~~~ly~hta~~~~k~-----~~l~~np~V~~~v~~~~~~~~~~v~~~~t~~y~sV~v~G~a~~v~d~  110 (185)
T 2hti_A           49 NHAIYFHGASEGRKI-----KMIEANPEVCFTICEDLGTIVSPVPAHTDTAYMSVIIFGTIEPVSAI  110 (185)
T ss_dssp             TTEEEEEEESSSHHH-----HHHHHCCEEEEEEEECC-------------CEEEEEEEEEEEECCCH
T ss_pred             CCEEEEEeCCcCHHH-----HHhhcCCeEEEEEEeccccccccccccCcceEEEEEEEEEEEEECCH
Confidence            445677777778995     3699999999999765    3         34789999999999765

>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens}

Probab=91.76  E-value=0.39  Score=43.67  Aligned_cols=60  Identities=8%  Similarity=0.050  Sum_probs=45.5

Q ss_pred             CCCceEeeecCCCccccccchhHhhCCceEEEeecCC-----CCceEEEEEEeeEcCHHH----HHHHHhcCCC
Q psy2497         224 EDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEP-----LKRSVRIEGHVEKTSDKE----SDDYFQSRPY  288 (331)
Q Consensus       224 ~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~-----l~RQVri~G~v~~~~~~e----s~~yf~~Rp~  288 (331)
                      ++...|++..-+.|.     +.|..||+|||++..+.     ..+.|.|.|+++.+++++    .+.|+..-|.
T Consensus        66 ~g~~~~~~s~~~~h~-----~NL~~dprvSl~V~~~~~~d~~~~~rvtl~G~a~~v~~~e~~~l~~~y~~rhP~  134 (258)
T 3dnh_A           66 DGTPFFFAAGLTLHA-----RNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPK  134 (258)
T ss_dssp             TSCEEEEEETTSHHH-----HHHHHCCEEEEEECCGGGSCGGGSCEEEEEEEEEECCGGGHHHHHHHHHHHCTT
T ss_pred             CCCEEEEEeCCcHHH-----HHHhhCCCEEEEEecCCCCChhhCCeEEEEEEEEEcCchHHHHHHHHHHHHCcC
Confidence            344667777778885     37999999999999775     346799999999999763    4556665564

>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}

Probab=91.20  E-value=0.37  Score=43.80  Aligned_cols=50  Identities=12%  Similarity=0.031  Sum_probs=40.1

Q ss_pred             CCCCceEeeecCCCccccccchhHhhCC-ceEEEeecCCC-------CceEEEEEEeeEcCHH
Q psy2497         223 GEDGWYYERLFPQPKQGIQYLHLKAENP-QASLAFYWEPL-------KRSVRIEGHVEKTSDK  277 (331)
Q Consensus       223 ~~~gw~f~tl~pS~K~~~~~~~~l~~np-~aal~f~W~~l-------~RQVri~G~v~~~~~~  277 (331)
                      +++...|+...-+.|.     +.|..|| +|||+|.-++-       .+-|.|.|+|+.++++
T Consensus       122 ~~g~~~~~~s~~a~h~-----~NL~~nP~rvSl~v~e~e~~~~~~~~~~rltl~G~a~~v~~~  179 (251)
T 3swj_A          122 TQWGNYIYISEVSEHF-----NNIKVNPNNIEIMFLEDESKAASVILRKRLRYRVNASFLERG  179 (251)
T ss_dssp             ETTEEEEEEETTSHHH-----HHHHHSTTCEEEEEECCTTTSSCTTCCCEEEEEEEEEECCSS
T ss_pred             ECCEEEEEEeCchHHH-----HHHHhCCCeEEEEEEcCcccccCccccceEEEEEEEEEecCh
Confidence            3556778888888885     3799999 99999986542       4679999999999874

>2vpa_A NIMA-related protein; cofactor, atomic resolution, antibiotic resistance, oxidoreductase; 1.2A {Deinococcus radiodurans} SCOP: b.45.1.1 PDB: 1w3p_A 1w3q_A 1w3r_A* 1w3o_A 2x1k_A 2x1j_A

Probab=90.48  E-value=0.22  Score=44.10  Aligned_cols=49  Identities=14%  Similarity=0.053  Sum_probs=37.5

Q ss_pred             ceEeeecCCCccccccchhHhhCCceEEEeecCCC-------------CceEEEEEEeeEcCHHHHH
Q psy2497         227 WYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPL-------------KRSVRIEGHVEKTSDKESD  280 (331)
Q Consensus       227 w~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l-------------~RQVri~G~v~~~~~~es~  280 (331)
                      +.|.+...++|. +    .|..||+||++|.-+.-             .+.|.|.|+|+.++.++-.
T Consensus        89 Lyfhta~~~~K~-~----~l~~np~V~~~v~~~~~~v~~~~~~~~t~~y~sV~v~G~a~~vd~~e~~  150 (216)
T 2vpa_A           89 LVYHTNVVGRLR-A----NAGQGHPATLEVSEIGQFLPSNSPLELSVQYRSVMVFGTARVLAGEDAR  150 (216)
T ss_dssp             EEEECCCCCSSB-S----SCSSEEEEEEEEEEEEEEECCSSGGGCEEEEEEEEEEEEEEECCHHHHH
T ss_pred             EEEEecCcCHHH-H----HhccCCcEEEEEEeCCeeccCccCCCCcccEEEEEEEEEEEEECHHHHH
Confidence            667777779995 2    59999999999965531             4889999999999444443

>2fur_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Thermoplasma acidophilum} SCOP: b.45.1.1

Probab=89.81  E-value=0.31  Score=42.77  Aligned_cols=50  Identities=10%  Similarity=-0.031  Sum_probs=38.9

Q ss_pred             CCCCceEeeecCCCccccccchhHhhCCceEEEeecCC-------------CCceEEEEEEeeEcCHH
Q psy2497         223 GEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEP-------------LKRSVRIEGHVEKTSDK  277 (331)
Q Consensus       223 ~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~-------------l~RQVri~G~v~~~~~~  277 (331)
                      +++.+.|.+...++|.     +.|..||+||++|.=+.             -.+.|.|.|+++.+.++
T Consensus        55 ~~~~lyfhta~~~~k~-----~~l~~np~V~~~v~~~~~~v~~~~~~~~t~~y~sV~v~G~a~~v~d~  117 (209)
T 2fur_A           55 EGKTIYLHGSMKSRIY-----GILKTGQLIAISLLEINGIVLAKEIKNNSINYVSALIFGRPYEIDDT  117 (209)
T ss_dssp             ETTEEEEEEETTSHHH-----HHHHTTCCEEEEEEEEEEEEECSBGGGCEEEEEEEEEEECCEECCCH
T ss_pred             ECCEEEEEeCCcCHHH-----HHhhcCCeEEEEEEcCCeeecCCCCCCCccEEEEEEEEEEEEEECCH
Confidence            3455777777778995     36999999999995432             14889999999999775

>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032}

Probab=84.49  E-value=1.6  Score=35.92  Aligned_cols=54  Identities=13%  Similarity=-0.115  Sum_probs=31.7

Q ss_pred             CCCceEeeecCCCccccccchhHhhCCceEEEeecC--CCCceEEEEEEeeEcCHH-HHHHHH
Q psy2497         224 EDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWE--PLKRSVRIEGHVEKTSDK-ESDDYF  283 (331)
Q Consensus       224 ~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~--~l~RQVri~G~v~~~~~~-es~~yf  283 (331)
                      ++...|.+-. ..|-     ..|+.||+||++..-.  .....|.|.|+++.+.+. |-.+..
T Consensus        45 ~~~iyfh~a~-g~K~-----~~i~~~~~V~f~vd~~~~~~~~SV~v~G~a~~v~d~~e~~~a~  101 (138)
T 3fkh_A           45 KGAIYIRTAE-GNKL-----FSMNLNHDVLFEADEVKDGKAWSVVVRATAEIVRKLDEIAYAD  101 (138)
T ss_dssp             TTEEEEEEEC--------------CCSEEEEEEEEEETTEEEEEEEEEEEEECCSHHHHHHHH
T ss_pred             CCEEEEEeCC-ChHH-----HHhhcCCCEEEEEEECCCCCCEEEEEEEEEEEECCHHHHHHHH
Confidence            3445566554 5674     2599999999998732  123389999999999764 444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	331
d1nrga_	213	b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP	2e-54
d1nrga_	213	b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP	9e-07
d1ci0a_	205	b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP	2e-53
d1ci0a_	205	b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP	1e-11
d1dnla_	199	b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP	6e-50
d1dnla_	199	b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP	1e-06
d2a2ja1	201	b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase	3e-46
d2a2ja1	201	b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase	2e-07
d1t9ma_	204	b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP	2e-41
d1t9ma_	204	b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP	0.003
d2i02a1	143	b.45.1.1 (A:5-147) General stress protein 26 {Nost	1e-23
d2i02a1	143	b.45.1.1 (A:5-147) General stress protein 26 {Nost	0.001
d2fhqa1	135	b.45.1.1 (A:3-137) Putative general stress protein	5e-20
d2hq7a1	141	b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Cl	8e-19
d1w9aa_	142	b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobac	2e-14
d1w9aa_	142	b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobac	8e-06
d1rfea_	160	b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobac	8e-14
d2asfa1	125	b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {M	2e-05
d1vl7a_	135	b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanob	8e-04

>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  175 bits (444), Expect = 2e-54
 Identities = 117/213 (54%), Positives = 151/213 (70%), Gaps = 4/213 (1%)

Query: 25  EKDIV-KEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVF 83
           E  +   +P K F +WF EA   P I EANAM +AT T++G PS RM+LLK +GK+GF F
Sbjct: 2   ETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRF 61

Query: 84  FTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGA 143
           FTN+ SRKG EL  NP ASL FYWEPL R VR+EG V+K  ++E++ YF SRP +S+IGA
Sbjct: 62  FTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGA 121

Query: 144 IASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHD 203
           + S QS     R+ + K  EEL Q Y++ + VP+PK WGGYV+ P+V+EFWQGQ++R+HD
Sbjct: 122 VVSHQSSVIPDREYLRKKNEELEQLYQDQE-VPKPKSWGGYVLYPQVMEFWQGQTNRLHD 180

Query: 204 RIVFKR--PVPGEPLGPHSHEGEDGWYYERLFP 234
           RIVF+R  P    PLGP +H GE+ W YERL P
Sbjct: 181 RIVFRRGLPTGDSPLGPMTHRGEEDWLYERLAP 213

>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 9e-07
 Identities = 42/85 (49%), Positives = 57/85 (67%), Gaps = 1/85 (1%)

Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
             NP ASL FYWEPL R VR+EG V+K  ++E++ YF SRP +S+IGA+ S QS     R
Sbjct: 74  DSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDR 133

Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
           + + K  EEL Q Y++ + VP+PK 
Sbjct: 134 EYLRKKNEELEQLYQDQE-VPKPKS 157

>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  172 bits (437), Expect = 2e-53
 Identities = 76/214 (35%), Positives = 125/214 (58%), Gaps = 13/214 (6%)

Query: 23  LLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATST-KNGIPSGRMVLLKSYGKNGF 81
           L EK +  +P  LF  WF+EA   P      A+  +++   +G  S R++L K     GF
Sbjct: 3   LNEKQLTDDPIDLFTKWFNEAKEDPRETLPEAITFSSAELPSGRVSSRILLFKELDHRGF 62

Query: 82  VFFTNY-NSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASK 140
             ++N+  SRK +++A NP A++ F+W+ L+R VR+EG  E  + + S+ YF++RP  SK
Sbjct: 63  TIYSNWGTSRKAHDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSK 122

Query: 141 IGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDR 200
           IGA AS QS   ++R+++ ++T++  +++K+ + +P P +WGG  ++P  IEFWQG+  R
Sbjct: 123 IGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSR 182

Query: 201 VHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           +HDR V++R               D W   RL P
Sbjct: 183 LHDRFVYRR-----------KTENDPWKVVRLAP 205

>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (147), Expect = 1e-11
 Identities = 33/88 (37%), Positives = 60/88 (68%)

Query: 244 HLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPC 303
           H  A NP A++ F+W+ L+R VR+EG  E  + + S+ YF++RP  SKIGA AS QS   
Sbjct: 75  HDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSKIGAWASRQSDVI 134

Query: 304 ESRDQMSKITEELRQKYKEGDYVPRPKH 331
           ++R+++ ++T++  +++K+ + +P P +
Sbjct: 135 KNREELDELTQKNTERFKDAEDIPCPDY 162

>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Escherichia coli [TaxId: 562]} Length = 199

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Escherichia coli [TaxId: 562]

 Score =  163 bits (412), Expect = 6e-50
 Identities = 81/212 (38%), Positives = 114/212 (53%), Gaps = 15/212 (7%)

Query: 23  LLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFV 82
           L  +D+  +P  LFE W  +A     + +  AM +AT  ++G P  R+VLLK Y + G V
Sbjct: 3   LRRRDLPADPLTLFERWLSQACEA-KLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMV 61

Query: 83  FFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIG 142
           F+TN  SRK +++  NP+ SL F W  L+R V + G  E+ S  E   YF SRP  S+IG
Sbjct: 62  FYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIG 121

Query: 143 AIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVH 202
           A  S QS    +R  +     EL+QK+++   VP P  WGG+ V  + IEFWQG   R+H
Sbjct: 122 AWVSKQSSRISARGILESKFLELKQKFQQ-GEVPLPSFWGGFRVSLEQIEFWQGGEHRLH 180

Query: 203 DRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           DR +++R               D W  +RL P
Sbjct: 181 DRFLYQR-------------ENDAWKIDRLAP 199

>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Escherichia coli [TaxId: 562]} Length = 199

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Escherichia coli [TaxId: 562]

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 306
             NP+ SL F W  L+R V + G  E+ S  E   YF SRP  S+IGA  S QS    +R
Sbjct: 75  ENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISAR 134

Query: 307 DQMSKITEELRQKYKEGDYVPRPKH 331
             +     EL+QK+++   VP P  
Sbjct: 135 GILESKFLELKQKFQQ-GEVPLPSF 158

>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 201

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  153 bits (388), Expect = 3e-46
 Identities = 75/212 (35%), Positives = 107/212 (50%), Gaps = 19/212 (8%)

Query: 23  LLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFV 82
           L    +      L   W ++A    G+ E NAM +AT   +G P  R VL K   ++G  
Sbjct: 9   LDFDWLDDGWLTLLRRWLNDAQRA-GVSEPNAMVLATV-ADGKPVTRSVLCKILDESGVA 66

Query: 83  FFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIG 142
           FFT+Y S KG +LA  P AS  F W  L R   ++G V K S +E   Y+  RP  +++G
Sbjct: 67  FFTSYTSAKGEQLAVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLG 126

Query: 143 AIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVH 202
           A AS QSRP  SR Q+     E+ +++ + D +P P  WGGY + P+++EFWQG+ +R+H
Sbjct: 127 AWASQQSRPVGSRAQLDNQLAEVTRRFADQDQIPVPPGWGGYRIAPEIVEFWQGRENRMH 186

Query: 203 DRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP 234
           +RI                        ERL P
Sbjct: 187 NRIRVAN-----------------GRLERLQP 201

>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 201

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 30/84 (35%), Positives = 44/84 (52%)

Query: 248 ENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRD 307
             P AS  F W  L R   ++G V K S +E   Y+  RP  +++GA AS QSRP  SR 
Sbjct: 81  VTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVGSRA 140

Query: 308 QMSKITEELRQKYKEGDYVPRPKH 331
           Q+     E+ +++ + D +P P  
Sbjct: 141 QLDNQLAEVTRRFADQDQIPVPPG 164

>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseudomonas aeruginosa [TaxId: 287]} Length = 204

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  141 bits (356), Expect = 2e-41
 Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 17/204 (8%)

Query: 31  EPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSR 90
            P ++  +W   A    G+ E  A+ +AT    G PS R+V++   G+ G VF T+ +S+
Sbjct: 18  NPMEVLRNWLERARRY-GVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHADSQ 76

Query: 91  KGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSR 150
           KG ELA+NP AS   YW    + + + G  E+  D+ +D  + SRPY +   +I    SR
Sbjct: 77  KGRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSI---ASR 133

Query: 151 PCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRP 210
             E+   +  +  E R+  +    +PRP  +  + +  + +EFW   ++R+H+R+ + R 
Sbjct: 134 QSETLADIHALRAEARRLAETDGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDR- 192

Query: 211 VPGEPLGPHSHEGEDGWYYERLFP 234
                        E GW +  L P
Sbjct: 193 ------------DEGGWKHRYLQP 204

>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseudomonas aeruginosa [TaxId: 287]} Length = 204

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 244 HLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPC 303
              A+NP AS   YW    + + + G  E+  D+ +D  + SRPY +   +I    SR  
Sbjct: 79  RELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSI---ASRQS 135

Query: 304 ESRDQMSKITEELRQKYKEGDYVPRPKH 331
           E+   +  +  E R+  +    +PRP  
Sbjct: 136 ETLADIHALRAEARRLAETDGPLPRPPG 163

>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Length = 143

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: General stress protein 26
species: Nostoc punctiforme pcc 73102 [TaxId: 63737]

 Score = 92.5 bits (229), Expect = 1e-23
 Identities = 24/161 (14%), Positives = 41/161 (25%), Gaps = 33/161 (20%)

Query: 49  IIEANAMFIATSTKNGIPSGRMVLLKSY--GKNGFVFFTNYNSRKGNELAENPQASLAFY 106
           I   +     T   +G      +        +    FFT   S K  E+  + Q +++F 
Sbjct: 14  IKNIDYGMFTTVDDDGSLHSYPMSKSGDINSEATLWFFTYAGSHKVTEIEHHEQVNVSFS 73

Query: 107 WEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELR 166
               +R V I G  +   D+                                     EL+
Sbjct: 74  SPEQQRYVSISGTSQLVKDRNKMRELWK----------------------------PELQ 105

Query: 167 QKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVF 207
             + +G             V    + +W   S      I F
Sbjct: 106 TWFPKG---LDEPDIALLKVNINQVNYWDSTSSFKPQTISF 143

>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Length = 143

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: General stress protein 26
species: Nostoc punctiforme pcc 73102 [TaxId: 63737]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 7/43 (16%), Positives = 14/43 (32%)

Query: 247 AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYA 289
             + Q +++F     +R V I G  +   D+            
Sbjct: 63  EHHEQVNVSFSSPEQQRYVSISGTSQLVKDRNKMRELWKPELQ 105

>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 135

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Putative general stress protein BT1439
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 82.4 bits (203), Expect = 5e-20
 Identities = 22/156 (14%), Positives = 46/156 (29%), Gaps = 35/156 (22%)

Query: 51  EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFF-TNYNSRKGNELAENPQASLAFYWEP 109
           +   + +A+  K G P    +   +      ++  T  +S K  +   NP+A L F  + 
Sbjct: 14  KCEVVTLASVNKEGYPRPVPMSKIAAEGISTIWMSTGADSLKTIDFLSNPKAGLCFQEK- 72

Query: 110 LKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKY 169
              SV + G VE  +D++                                   +   + +
Sbjct: 73  -GDSVALMGEVEVVTDEKLKQELWQ----------------------------DWFIEHF 103

Query: 170 KEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRI 205
             G   P    +           +W      +H ++
Sbjct: 104 PGG---PTDPGYVLLKFTANHATYWIE-GTFIHKKL 135

>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]} Length = 141

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypotheical protein CAC3491
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 79.4 bits (195), Expect = 8e-19
 Identities = 21/168 (12%), Positives = 52/168 (30%), Gaps = 34/168 (20%)

Query: 37  ESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNG-FVFFTNYNSRKGNEL 95
           E +  E+N    +  +  + + T+ +NG P+ + ++   +     F   TN ++R    L
Sbjct: 3   EKFLIESNEL--VESSKIVMVGTNGENGYPNIKAMMRLKHDGLKKFWLSTNTSTRMVERL 60

Query: 96  AENPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESR 155
            +N +  L F  +     + + G +E   D+ S +   +                     
Sbjct: 61  KKNNKICLYFVDDNKFAGLMLVGTIEILHDRASKEMLWT--------------------- 99

Query: 156 DQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHD 203
                  +     Y  G        +       +   +++   +    
Sbjct: 100 -------DGCEIYYPLG---IDDPDYTALCFTAEWGNYYRHLKNITFK 137

>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 142

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Rv1155
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 67.2 bits (163), Expect = 2e-14
 Identities = 22/135 (16%), Positives = 36/135 (26%), Gaps = 9/135 (6%)

Query: 51  EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVF-FTNYNSRKGNELAENPQASLAFYWEP 109
             +   +AT   +G P    V      +   +         K   L  +P+AS+    + 
Sbjct: 11  GNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADD 70

Query: 110 LKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKY 169
                  EG  + T    + D        +    IA + S   + R  M      L    
Sbjct: 71  GWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVL---- 126

Query: 170 KEGDYVPRPKHWGGY 184
                     H  G 
Sbjct: 127 ----LTLPISHVYGL 137

>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 142

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Rv1155
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.6 bits (99), Expect = 8e-06
 Identities = 12/61 (19%), Positives = 21/61 (34%)

Query: 249 NPQASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQ 308
           +P+AS+    +        EG  + T    + D        +    IA + S   + R  
Sbjct: 59  DPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQA 118

Query: 309 M 309
           M
Sbjct: 119 M 119

>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 160

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Rv2991
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 66.0 bits (160), Expect = 8e-14
 Identities = 22/170 (12%), Positives = 39/170 (22%), Gaps = 36/170 (21%)

Query: 51  EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFY---W 107
            +    +AT   +G P    +             T   S+K   L  +P+ S        
Sbjct: 20  SSRTGTLATIGPDGQPHLTAMWYAVID-GEIWLETKAKSQKAVNLRRDPRVSFLLEDGDT 78

Query: 108 EPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQ 167
               R V  EG  E   + E+        +    G    +                    
Sbjct: 79  YDTLRGVSFEGVAEIVEEPEALHRVGVSVWERYTGPYTDECKPM---------------- 122

Query: 168 KYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLG 217
                          G  ++ +    W  +          K  +P   +G
Sbjct: 123 ------VDQMMNKRVGVRIVARRTRSWDHR----------KLGLPHMSVG 156

>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 125

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Rv2074
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 4/102 (3%)

Query: 51  EANAMFIATSTKNGIPSGRMVLLKSYGKNG-FVFFTNYNSRKGNELAENPQASLAFYWEP 109
           E +   + T   +  P    V      K       T   S+K      +  A L+     
Sbjct: 10  ERHLAMLTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQ--VD 67

Query: 110 LKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRP 151
             R + +EG     SD ++    + R YA +      +  R 
Sbjct: 68  GARWLSLEGRAAVNSDIDAVRDAELR-YAQRYRTPRPNPRRV 108

>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Length = 135

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Alr5027
species: Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]

 Score = 36.7 bits (84), Expect = 8e-04
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 6/93 (6%)

Query: 51  EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAF----- 105
           E  +  I+T ++ GIP+G               + +  +     +  NP  ++ F     
Sbjct: 7   EFQSAIISTISEQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEA 66

Query: 106 -YWEPLKRSVRIEGHVEKTSDKESDDYFQSRPY 137
              +   R            ++ES  + Q    
Sbjct: 67  KTNQIFARRRLSFDCTATLIERESQKWNQVVDQ 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	331
d1dnla_	199	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Esch	100.0
d1nrga_	213	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Huma	100.0
d1ci0a_	205	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Bake	100.0
d2a2ja1	201	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Myco	100.0
d1t9ma_	204	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseu	100.0
d1nrga_	213	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Huma	100.0
d2a2ja1	201	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Myco	99.98
d1dnla_	199	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Esch	99.97
d1ci0a_	205	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Bake	99.97
d1t9ma_	204	Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseu	99.95
d2hq7a1	141	Hypotheical protein CAC3491 {Clostridium acetobuty	99.89
d2i02a1	143	General stress protein 26 {Nostoc punctiforme pcc	99.89
d2fhqa1	135	Putative general stress protein BT1439 {Bacteroide	99.87
d2asfa1	125	Hypothetical protein Rv2074 {Mycobacterium tubercu	99.71
d1rfea_	160	Hypothetical protein Rv2991 {Mycobacterium tubercu	99.59
d1w9aa_	142	Hypothetical protein Rv1155 {Mycobacterium tubercu	99.58
d1vl7a_	135	Hypothetical protein Alr5027 {Cyanobacterium (Nost	99.36
d2fg9a1	157	5-nitroimidazole resistance protein BT3078 {Bacter	99.35
d1flma_	122	FMN-binding protein {Desulfovibrio vulgaris, strai	99.31
d2htia1	156	Hypothetical protein BH0577 {Bacillus halodurans [	99.15
d2hq9a1	148	Hypothetical protein Mll6688 {Mesorhizobium loti [	99.12
d2fura1	193	Hypothetical protein Ta1372 {Thermoplasma acidophi	98.63
d2arza1	238	Hypothetical protein PA4388 {Pseudomonas aeruginos	98.58
d2hq7a1	141	Hypotheical protein CAC3491 {Clostridium acetobuty	98.49
d2i02a1	143	General stress protein 26 {Nostoc punctiforme pcc	98.26
d2fhqa1	135	Putative general stress protein BT1439 {Bacteroide	97.96
d2vpaa1	194	NimA-related protein DR0842 {Deinococcus radiodura	97.95
d1xhna1	170	Cellular repressor of E1A-stimulated genes CREG1 {	97.83
d1w9aa_	142	Hypothetical protein Rv1155 {Mycobacterium tubercu	97.78
d1rfea_	160	Hypothetical protein Rv2991 {Mycobacterium tubercu	97.03
d2asfa1	125	Hypothetical protein Rv2074 {Mycobacterium tubercu	96.92
d2hq9a1	148	Hypothetical protein Mll6688 {Mesorhizobium loti [	95.29
d2fg9a1	157	5-nitroimidazole resistance protein BT3078 {Bacter	95.06
d2htia1	156	Hypothetical protein BH0577 {Bacillus halodurans [	94.46
d1flma_	122	FMN-binding protein {Desulfovibrio vulgaris, strai	94.3
d1vl7a_	135	Hypothetical protein Alr5027 {Cyanobacterium (Nost	93.57
d1xhna1	170	Cellular repressor of E1A-stimulated genes CREG1 {	89.64
d2arza1	238	Hypothetical protein PA4388 {Pseudomonas aeruginos	88.59
d2fura1	193	Hypothetical protein Ta1372 {Thermoplasma acidophi	88.01
d2ptfa1	206	Uncharacterized protein MTH863 {Methanobacterium t	87.62
d2vpaa1	194	NimA-related protein DR0842 {Deinococcus radiodura	86.84
d2imla1	189	Hypothetical protein AF1834 {Archaeoglobus fulgidu	83.17

>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-51  Score=368.87  Aligned_cols=198  Identities=41%  Similarity=0.773  Sum_probs=189.8

Q ss_pred             CCCcccccCChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcE
Q psy2497          22 VLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQA  101 (331)
Q Consensus        22 ~~~~~~~~~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~v  101 (331)
                      +|++++++.||+++|+.|+++|.+ .+..+|++|+|||||++|.|++|+|+||+++++||+||||.+|+|+.+|++||+|
T Consensus         2 ~l~~~~~~~~P~~~f~~w~~~A~~-~~~~~p~A~~LATvd~~g~P~~RtV~lr~~~~~g~~F~Tn~~S~K~~el~~Np~a   80 (199)
T d1dnla_           2 GLRRRDLPADPLTLFERWLSQACE-AKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRV   80 (199)
T ss_dssp             CCCGGGCCSSHHHHHHHHHHHHHH-TTCSCTTEEEEEEECTTSCEEEEEEECCEEETTEEEEEEETTSHHHHHHHHCCEE
T ss_pred             CCChhhCCCCHHHHHHHHHHHHHH-cCCCCCCEEEEEEECCCCCEecceeehhhcccCceEEEecccchhhhhhhcCCce
Confidence            488999999999999999999997 7899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCce
Q psy2497         102 SLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHW  181 (331)
Q Consensus       102 al~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~  181 (331)
                      +|||||+.+.+||||+|+|+.++++++++||+++|+++|+.+|++.||++|.+++.++...+.+...+.+.+ +|+|++|
T Consensus        81 sl~f~w~~~~rQiRi~G~~~~~~~~~sd~~f~~rp~~sqi~a~~s~Qs~~i~~~~~l~~~~~~~~~~~~~~~-~p~p~~w  159 (199)
T d1dnla_          81 SLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGE-VPLPSFW  159 (199)
T ss_dssp             EEEECCGGGTEEEEEEEEEEECCHHHHHHHHTTSCHHHHHHHHHCCTTSCCSCTHHHHHHHHHHHHHSTTSS-CCCCTTE
T ss_pred             EEEEeecchheeeEEEEEeeecccHHHHhHhhccCccceeeeeccccccccccHHHHHHHHHHHHhhcccCC-CCCCCce
Confidence            999999999999999999999999999999999999999999999999999999999999999988886655 8999999


Q ss_pred             EEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497         182 GGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP  234 (331)
Q Consensus       182 ~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p  234 (331)
                      +||+|.|++||||+++.+++|+|++|.+             +++||...+++|
T Consensus       160 ~g~~l~P~~iEfw~~~~~rlH~R~~y~~-------------~~~~W~~~~L~P  199 (199)
T d1dnla_         160 GGFRVSLEQIEFWQGGEHRLHDRFLYQR-------------ENDAWKIDRLAP  199 (199)
T ss_dssp             EEEEECCSEEEEEECCGGGCCEEEEEEE-------------CSSSEEEEECCC
T ss_pred             EEEEEeccEEEEeCCCCCCCeeEEEEEE-------------cCCcEEEEEecC
Confidence            9999999999999999999999999998             577899999887

>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-51  Score=368.00  Aligned_cols=208  Identities=56%  Similarity=1.040  Sum_probs=192.6

Q ss_pred             cccc-CChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEE
Q psy2497          26 KDIV-KEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLA  104 (331)
Q Consensus        26 ~~~~-~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~  104 (331)
                      .+++ .||+.+|+.||++|.+..++.+|++|+|||||.+|.|++|+|++++++++||+|||+..|+|+.+|.+||+|+|+
T Consensus         3 ~~~~~~dP~~~F~~W~~eA~~~~~~~ep~am~LATvd~~G~P~~R~Vllk~i~~~g~~FfTn~~S~K~~el~~Np~aal~   82 (213)
T d1nrga_           3 THLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLV   82 (213)
T ss_dssp             SSCSCSSHHHHHHHHHHHHHHCTTCSCTTEEEEEEECTTSCEEEEEEECCCEETTEEEEEEETTSHHHHHHHHSCEEEEE
T ss_pred             cccCCCCHHHHHHHHHHHHHHcCCCCCccEEEEEEECCCCCEEEEEEeeehhhccceEEEeccCchhhhhhhcCCceEEE
Confidence            3444 599999999999998645678999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEE
Q psy2497         105 FYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGY  184 (331)
Q Consensus       105 f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l  184 (331)
                      |||+.+.|||||+|+|+.++++++++||.+||+++|+.+|+|+||++|.+++.++...+.+.+.|.+++ +|+|++|+||
T Consensus        83 f~W~~l~RQvRi~G~~~~l~~~~~~~yf~~Rp~~sqi~a~~s~QS~~i~~~~~l~~~~~~~~~~~~~~~-vp~P~~w~Gy  161 (213)
T d1nrga_          83 FYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQE-VPKPKSWGGY  161 (213)
T ss_dssp             EEEGGGTEEEEEEEEEEECCHHHHHHHHHHSCHHHHHHHHHCCTTSCCSCHHHHHHHHHHHHHHTTTSC-CCCCTTEEEE
T ss_pred             EechhhheeeeeeEeeeecccHhhhHHHhcCCcccccceeeccccCCCCCHHHHHHHHHHHHHHccCCC-CCCCCcceEE
Confidence            999999999999999999999999999999999999999999999999999999999999998887665 9999999999


Q ss_pred             EEeceEEEeeecCCCCccceEEEeccCCC--CCCCCCCCcCCCCceEeeecC
Q psy2497         185 VVIPKVIEFWQGQSDRVHDRIVFKRPVPG--EPLGPHSHEGEDGWYYERLFP  234 (331)
Q Consensus       185 ~v~p~~iEfwq~~~~r~h~R~~f~k~~~~--~~~~~~~~~~~~gw~f~tl~p  234 (331)
                      +|.|+.||||+++.+++|+|++|.+....  +..+++...++++|...+++|
T Consensus       162 ~l~P~~iEFwq~~~~RlHdR~~y~R~~~~~~~~~~~~~~~~~~~W~~~rL~P  213 (213)
T d1nrga_         162 VLYPQVMEFWQGQTNRLHDRIVFRRGLPTGDSPLGPMTHRGEEDWLYERLAP  213 (213)
T ss_dssp             EECCSEEEEEECCTTSCCEEEEEEECSSTTSCCCCTTCEECSTTEEEEECCC
T ss_pred             EEeccEEEEcCCCCCCcEeEEEEEecCCcccccccccccccCCCeeEEEecC
Confidence            99999999999999999999999985442  255666667788999999987

>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-50  Score=360.52  Aligned_cols=202  Identities=38%  Similarity=0.787  Sum_probs=187.2

Q ss_pred             CCCcccccCChHHHHHHHHHHhhcCCCCCCCceEEEEeec-CCCCeeEEEEEEEEeeCCeEEEEecC-CCcchhhhhcCC
Q psy2497          22 VLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATST-KNGIPSGRMVLLKSYGKNGFVFFTNY-NSRKGNELAENP   99 (331)
Q Consensus        22 ~~~~~~~~~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd-~dG~P~~R~V~~r~~~~~gl~F~T~~-~S~K~~eL~~np   99 (331)
                      .|++++++.||+.+|+.|+++|.+.....+|++|+||||| .+|.|++|||+||+++++||+|||+. +|+|+.+|.+||
T Consensus         2 ~L~~~~l~~~P~~~f~~W~~~A~~~~~~~~p~a~~LATvd~~~G~P~~RtVllr~~~~~g~~fftn~~~S~K~~el~~Np   81 (205)
T d1ci0a_           2 TLNEKQLTDDPIDLFTKWFNEAKEDPRETLPEAITFSSAELPSGRVSSRILLFKELDHRGFTIYSNWGTSRKAHDIATNP   81 (205)
T ss_dssp             CCCGGGCCSSHHHHHHHHHHHHHHCSSCSCTTEEEEEEEETTTTEEEEEEEECCEECSSSEEEEEECSSSHHHHHHHHCC
T ss_pred             CCChhhcCCCHHHHHHHHHHHHHhcCCCCCcceEEEEEeecCCCccchhhHHHHhhccceEEEEEccccChhhhhhhcCC
Confidence            4778999999999999999999863346679999999999 69999999999999999999999996 799999999999


Q ss_pred             cEEEEEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy2497         100 QASLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPK  179 (331)
Q Consensus       100 ~val~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~  179 (331)
                      +|+|||||+.+.+||||+|+|++++++++++||+++|+++|+++|+|.||+++.+++.+++....+.+.+.++..+|+|+
T Consensus        82 ~asl~f~w~~~~rQvRI~G~~~~~~~~~sd~yf~~rp~~sqi~a~~s~qs~~~~~~~~l~~~~~~~~~~~~~~~~~p~P~  161 (205)
T d1ci0a_          82 NAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSKIGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPD  161 (205)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEECCHHHHHHHHHHSCHHHHHHHHHCCTTCEESCHHHHHHHHHHHHHHTTSCSSCCCCT
T ss_pred             ceEEEEechhheeeeeEEEeeecCCHHHHHHHHhcCChhhccceecccccccccchhhHHHHHHHHHHHhccccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999998888888886555699999


Q ss_pred             ceEEEEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497         180 HWGGYVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP  234 (331)
Q Consensus       180 ~~~~l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p  234 (331)
                      +|+||+|.|++|||||++.+++|+|++|.+           ..++++|...+++|
T Consensus       162 ~wgg~~l~P~~iEFwq~~~~rlH~R~~y~r-----------~~~~~~W~~~~L~P  205 (205)
T d1ci0a_         162 YWGGLRIVPLEIEFWQGRPSRLHDRFVYRR-----------KTENDPWKVVRLAP  205 (205)
T ss_dssp             TEEEEEEEEEEEEEEECCTTSCCEEEEEEC-----------SSTTSCCEEEEECC
T ss_pred             ceEEEEEeccEEEEecCCCCCCeeEEEEEE-----------cCCCCceEEEEecC
Confidence            999999999999999999999999999998           12356799999987

>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.3e-50  Score=359.00  Aligned_cols=186  Identities=38%  Similarity=0.684  Sum_probs=178.8

Q ss_pred             CCCcccccCChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcE
Q psy2497          22 VLLEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQA  101 (331)
Q Consensus        22 ~~~~~~~~~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~v  101 (331)
                      .|+.++++.||+++|+.||++|.+ .+..+|++|+||||+ ||.|++|+|+||+++++||+||||.+|+|+.+|++||+|
T Consensus         8 ~l~~~~l~~~pi~lf~~W~~eA~~-~~~~ep~a~~LaTv~-~g~P~~R~VlLk~i~~~g~~F~Tn~~S~K~~~l~~Np~v   85 (201)
T d2a2ja1           8 DLDFDWLDDGWLTLLRRWLNDAQR-AGVSEPNAMVLATVA-DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYA   85 (201)
T ss_dssp             CCCGGGGTTHHHHHHHHHHHHHHH-TTCSSTTEEEEEEEE-TTEEEEEEEEEEEEETTEEEEEEETTSHHHHHHHHSCEE
T ss_pred             CCChHHcCCCHHHHHHHHHHHHHH-cCCCCccEEEEEEec-CCceeeeEEEhhheeccceEEEecCCchhhhhhccCCce
Confidence            489999999999999999999997 789999999999997 799999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCce
Q psy2497         102 SLAFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHW  181 (331)
Q Consensus       102 al~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~  181 (331)
                      +|+|||+.+.+||||+|+|+.++++++++||++||+++|+.+|+|+||++|.+++.+++..+++...|++.+.+|+|++|
T Consensus        86 sl~f~w~~~~rQvRI~G~a~~l~~~~s~~yf~~Rp~~sqi~a~~s~QS~~i~~~~~l~~~~~~~~~~~~~~~~ip~P~~w  165 (201)
T d2a2ja1          86 SATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVGSRAQLDNQLAEVTRRFADQDQIPVPPGW  165 (201)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEECCHHHHHHHHHHSCHHHHHHHHHSCTTCCCCCSHHHHHHHHHHHHHHTTCSSCCCCTTE
T ss_pred             EEEEechhHhhHHHHHHHHhhcchHHHHHHHhccCcccccceeeccccccccchhhhhhhhhhHHHhhcCCCCCCCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999765459999999


Q ss_pred             EEEEEeceEEEeeecCCCCccceEEEec
Q psy2497         182 GGYVVIPKVIEFWQGQSDRVHDRIVFKR  209 (331)
Q Consensus       182 ~~l~v~p~~iEfwq~~~~r~h~R~~f~k  209 (331)
                      +||+|.|++|||||++.+++|+|++|.+
T Consensus       166 ~g~~l~P~~iEFWq~~~~RlHdR~~y~~  193 (201)
T d2a2ja1         166 GGYRIAPEIVEFWQGRENRMHNRIRVAN  193 (201)
T ss_dssp             EEEEECCSEEEEEECCTTSCCEEEEEET
T ss_pred             EEEEEEeeEEEEcCCCCCCcEeEEEEcC
Confidence            9999999999999999999999999963

>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=9.5e-49  Score=351.05  Aligned_cols=194  Identities=31%  Similarity=0.582  Sum_probs=181.0

Q ss_pred             CcccccCChHHHHHHHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEE
Q psy2497          24 LEKDIVKEPFKLFESWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASL  103 (331)
Q Consensus        24 ~~~~~~~~P~~~f~~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val  103 (331)
                      +.+++|.||+++|+.|+++|.+ .+.++|++|+|||||.||.|++|||+||+++++||+||||.+|+|+.+|..||+|+|
T Consensus        11 ~~~~~p~~P~~~f~~W~~~a~~-~~~~~p~a~~LATv~~dG~P~~RtVvLr~~~~~~~~f~T~~~S~K~~~l~~np~~sl   89 (204)
T d1t9ma_          11 EFEAPPANPMEVLRNWLERARR-YGVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASG   89 (204)
T ss_dssp             TTTSCCSSHHHHHHHHHHHHHH-HTCSSTTEEEEEEECTTSCEEEEEEECCEECSSEEEEEEETTSHHHHHHHHCCEEEE
T ss_pred             ccccCCCCHHHHHHHHHHHHHH-cCCCCCCEEEEEEECCCCCEeeehhhHHHhhhhceEEEEecchhhhhhhhcccccEE
Confidence            4567789999999999999997 789999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEE
Q psy2497         104 AFYWEPLKRSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGG  183 (331)
Q Consensus       104 ~f~~~~~~~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~  183 (331)
                      ||||+.+.+||||+|+|+.++++++++||.++|+++|+.+|+++||++|.+++.++....++..  .+++ +|+|++|+|
T Consensus        90 ~f~w~~~~rQvRi~G~~~~l~~~~~~~~~~~rp~~s~~~a~~s~qs~~i~~~~~l~~~~~~~~~--~~~~-~p~p~~~~g  166 (204)
T d1t9ma_          90 VLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASRQSETLADIHALRAEARRLAE--TDGP-LPRPPGYCL  166 (204)
T ss_dssp             EEEETTTTEEEEEEEEEEECCHHHHHHHHHHSCGGGHHHHHHCCTTSBCSCHHHHHHHHHHHTT--SCSC-CCCCTTEEE
T ss_pred             EEecccceEEEEEEEEEeeccHHHHHHHHhcCchhcccceeecCcccccchhhhHHHHHHhhhh--ccCC-CCCCCceEE
Confidence            9999999999999999999999999999999999999999999999999999999876665532  2344 899999999


Q ss_pred             EEEeceEEEeeecCCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecC
Q psy2497         184 YVVIPKVIEFWQGQSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFP  234 (331)
Q Consensus       184 l~v~p~~iEfwq~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~p  234 (331)
                      |+|.|++||||+++.+++|+|++|.+             .+++|....++|
T Consensus       167 ~~l~p~~iEfw~~~~~rlH~R~~y~~-------------~~~~W~~~~L~P  204 (204)
T d1t9ma_         167 FELCLESVEFWGNGTERLHERLRYDR-------------DEGGWKHRYLQP  204 (204)
T ss_dssp             EEEEEEEEEEEEEEETTEEEEEEEEE-------------CSSSEEEEEECC
T ss_pred             EEecCCEEEEcCCCCCCCEEEEEEEe-------------cCCcEEEEEeCC
Confidence            99999999999999999999999998             578899998876

>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-34  Score=257.24  Aligned_cols=118  Identities=41%  Similarity=0.678  Sum_probs=112.0

Q ss_pred             CCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCH
Q psy2497         197 QSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSD  276 (331)
Q Consensus       197 ~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~  276 (331)
                      ..|.|+.|+++.|           +++++||+|+||+.|+|| +    +|++||+|||+|||++|+|||||+|.|+++++
T Consensus        40 ~~G~P~~R~Vllk-----------~i~~~g~~FfTn~~S~K~-~----el~~Np~aal~f~W~~l~RQvRi~G~~~~l~~  103 (213)
T d1nrga_          40 RDGKPSARMLLLK-----------GFGKDGFRFFTNFESRKG-K----ELDSNPFASLVFYWEPLNRQVRVEGPVKKLPE  103 (213)
T ss_dssp             TTSCEEEEEEECC-----------CEETTEEEEEEETTSHHH-H----HHHHSCEEEEEEEEGGGTEEEEEEEEEEECCH
T ss_pred             CCCCEEEEEEeee-----------hhhccceEEEeccCchhh-h----hhhcCCceEEEEechhhheeeeeeEeeeeccc
Confidence            4688999999999           578899999999999996 3    79999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497         277 KESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH  331 (331)
Q Consensus       277 ~es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~  331 (331)
                      ++|++||++||++|||+||+|+||++|.|++.|++++++++++|.++ +||||++
T Consensus       104 ~~~~~yf~~Rp~~sqi~a~~s~QS~~i~~~~~l~~~~~~~~~~~~~~-~vp~P~~  157 (213)
T d1nrga_         104 EEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQ-EVPKPKS  157 (213)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHCCTTSCCSCHHHHHHHHHHHHHHTTTS-CCCCCTT
T ss_pred             HhhhHHHhcCCcccccceeeccccCCCCCHHHHHHHHHHHHHHccCC-CCCCCCc
Confidence            99999999999999999999999999999999999999999999865 6999985

>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.98  E-value=2.2e-33  Score=249.75  Aligned_cols=117  Identities=31%  Similarity=0.457  Sum_probs=111.5

Q ss_pred             CCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCHHH
Q psy2497         199 DRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSDKE  278 (331)
Q Consensus       199 ~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~~e  278 (331)
                      |.++.|++..|           +++++||+|+|++.|+|+ +    +|++||+|||+|||++++|||||+|.|+++++++
T Consensus        48 g~P~~R~VlLk-----------~i~~~g~~F~Tn~~S~K~-~----~l~~Np~vsl~f~w~~~~rQvRI~G~a~~l~~~~  111 (201)
T d2a2ja1          48 GKPVTRSVLCK-----------ILDESGVAFFTSYTSAKG-E----QLAVTPYASATFPWYQLGRQAHVQGPVSKVSTEE  111 (201)
T ss_dssp             TEEEEEEEEEE-----------EEETTEEEEEEETTSHHH-H----HHHHSCEEEEEEEEGGGTEEEEEEEEEEECCHHH
T ss_pred             CceeeeEEEhh-----------heeccceEEEecCCchhh-h----hhccCCceEEEEechhHhhHHHHHHHHhhcchHH
Confidence            67999999999           578889999999999996 3    7999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497         279 SDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH  331 (331)
Q Consensus       279 s~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~  331 (331)
                      |++||++||++|||+||+|+||++|++++.|+++++++.++|+++++||+|+|
T Consensus       112 s~~yf~~Rp~~sqi~a~~s~QS~~i~~~~~l~~~~~~~~~~~~~~~~ip~P~~  164 (201)
T d2a2ja1         112 IFTYWSMRPRGAQLGAWASQQSRPVGSRAQLDNQLAEVTRRFADQDQIPVPPG  164 (201)
T ss_dssp             HHHHHHHSCHHHHHHHHHSCTTCCCCCSHHHHHHHHHHHHHHTTCSSCCCCTT
T ss_pred             HHHHHhccCcccccceeeccccccccchhhhhhhhhhHHHhhcCCCCCCCCCc
Confidence            99999999999999999999999999999999999999999987667999986

>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=6.8e-32  Score=240.15  Aligned_cols=118  Identities=35%  Similarity=0.506  Sum_probs=111.3

Q ss_pred             CCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCH
Q psy2497         197 QSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSD  276 (331)
Q Consensus       197 ~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~  276 (331)
                      ..|.|+.|++..|           +++++||+|+|++.|+|+ .    +|++||+|||+|||+++.|||||+|.|+++++
T Consensus        41 ~~g~P~~RtV~lr-----------~~~~~g~~F~Tn~~S~K~-~----el~~Np~asl~f~w~~~~rQiRi~G~~~~~~~  104 (199)
T d1dnla_          41 EHGQPYQRIVLLK-----------HYDEKGMVFYTNLGSRKA-H----QIENNPRVSLLFPWHTLERQVMVIGKAERLST  104 (199)
T ss_dssp             TTSCEEEEEEECC-----------EEETTEEEEEEETTSHHH-H----HHHHCCEEEEEECCGGGTEEEEEEEEEEECCH
T ss_pred             CCCCEecceeehh-----------hcccCceEEEecccchhh-h----hhhcCCceEEEEeecchheeeEEEEEeeeccc
Confidence            4578999999999           578889999999999996 3    79999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497         277 KESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH  331 (331)
Q Consensus       277 ~es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~  331 (331)
                      ++|++||++||++|||+||+|.||++|+|++.|+++++++.++|.++ +||+|++
T Consensus       105 ~~sd~~f~~rp~~sqi~a~~s~Qs~~i~~~~~l~~~~~~~~~~~~~~-~~p~p~~  158 (199)
T d1dnla_         105 LEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQG-EVPLPSF  158 (199)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHCCTTSCCSCTHHHHHHHHHHHHHSTTS-SCCCCTT
T ss_pred             HHHHhHhhccCccceeeeeccccccccccHHHHHHHHHHHHhhcccC-CCCCCCc
Confidence            99999999999999999999999999999999999999999999754 6999985

>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.6e-32  Score=240.24  Aligned_cols=119  Identities=33%  Similarity=0.588  Sum_probs=112.1

Q ss_pred             CCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeec-CCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcC
Q psy2497         197 QSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLF-PQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTS  275 (331)
Q Consensus       197 ~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~-pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~  275 (331)
                      ..|.|+.|++..|           +++++||+|+|++ .|+|+ +    +|++||+|||+|||+++.|||||+|.|++++
T Consensus        43 ~~G~P~~RtVllr-----------~~~~~g~~fftn~~~S~K~-~----el~~Np~asl~f~w~~~~rQvRI~G~~~~~~  106 (205)
T d1ci0a_          43 PSGRVSSRILLFK-----------ELDHRGFTIYSNWGTSRKA-H----DIATNPNAAIVFFWKDLQRQVRVEGITEHVN  106 (205)
T ss_dssp             TTTEEEEEEEECC-----------EECSSSEEEEEECSSSHHH-H----HHHHCCEEEEEEEETTTTEEEEEEEEEEECC
T ss_pred             CCCccchhhHHHH-----------hhccceEEEEEccccChhh-h----hhhcCCceEEEEechhheeeeeEEEeeecCC
Confidence            4578999999999           6888999999998 69996 3    7999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497         276 DKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH  331 (331)
Q Consensus       276 ~~es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~  331 (331)
                      +++|++||++||++|||+||+|.||++|.+++.|+++.+++.++|..+++||+|+|
T Consensus       107 ~~~sd~yf~~rp~~sqi~a~~s~qs~~~~~~~~l~~~~~~~~~~~~~~~~~p~P~~  162 (205)
T d1ci0a_         107 RETSERYFKTRPRGSKIGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPDY  162 (205)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHCCTTCEESCHHHHHHHHHHHHHHTTSCSSCCCCTT
T ss_pred             HHHHHHHHhcCChhhccceecccccccccchhhHHHHHHHHHHHhccccCCCCCCc
Confidence            99999999999999999999999999999999999999999999976667999985

>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=9.8e-29  Score=220.41  Aligned_cols=116  Identities=28%  Similarity=0.390  Sum_probs=106.6

Q ss_pred             CCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcCH
Q psy2497         197 QSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTSD  276 (331)
Q Consensus       197 ~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~~  276 (331)
                      ..|.++.|++..|           +++++||+|+|++.|+|+ +    +|+.||+|||+|||+++.|||||+|.|+++++
T Consensus        48 ~dG~P~~RtVvLr-----------~~~~~~~~f~T~~~S~K~-~----~l~~np~~sl~f~w~~~~rQvRi~G~~~~l~~  111 (204)
T d1t9ma_          48 GQGRPSTRIVVIA-----------ELGERGVVFATHADSQKG-R----ELAQNPWASGVLYWRESSQQIILNGRAERLPD  111 (204)
T ss_dssp             TTSCEEEEEEECC-----------EECSSEEEEEEETTSHHH-H----HHHHCCEEEEEEEETTTTEEEEEEEEEEECCH
T ss_pred             CCCCEeeehhhHH-----------HhhhhceEEEEecchhhh-h----hhhcccccEEEEecccceEEEEEEEEEeeccH
Confidence            3578999999999           577889999999999996 3    79999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcccceecccCCCCCCCHHHHHHHHHHHHhHhcCCCCCCCCCC
Q psy2497         277 KESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKH  331 (331)
Q Consensus       277 ~es~~yf~~Rp~~sqi~a~~s~QS~~i~~r~~l~~~~~~~~~~~~~~~~vp~P~~  331 (331)
                      +++++||++||++||++||+|+||++|+|++.|+.+++++.+.   +.+||+|++
T Consensus       112 ~~~~~~~~~rp~~s~~~a~~s~qs~~i~~~~~l~~~~~~~~~~---~~~~p~p~~  163 (204)
T d1t9ma_         112 ERADAQWLSRPYQTHPMSIASRQSETLADIHALRAEARRLAET---DGPLPRPPG  163 (204)
T ss_dssp             HHHHHHHHHSCGGGHHHHHHCCTTSBCSCHHHHHHHHHHHTTS---CSCCCCCTT
T ss_pred             HHHHHHHhcCchhcccceeecCcccccchhhhHHHHHHhhhhc---cCCCCCCCc
Confidence            9999999999999999999999999999999999998887543   236999975

>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypotheical protein CAC3491
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.89  E-value=1.1e-23  Score=176.37  Aligned_cols=128  Identities=16%  Similarity=0.211  Sum_probs=104.8

Q ss_pred             HHHHHhhcCCCCCCCceEEEEeecCCCCeeEEEEEEEEeeCC-eEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEE
Q psy2497          38 SWFHEANNTPGIIEANAMFIATSTKNGIPSGRMVLLKSYGKN-GFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRI  116 (331)
Q Consensus        38 ~Wl~~A~~~~~~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~-gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri  116 (331)
                      +|+.++.+  -+.+.++++|||+++||.|++|||.+...+++ .|||+|+.+|+|+++|++||+|+|+|+++...+||+|
T Consensus         4 ~~~~e~~e--~l~~~~~~~LaT~~~dG~P~~~p~~~~~~~~~~~l~f~T~~~s~K~~~l~~np~vsl~~~~~~~~~~v~i   81 (141)
T d2hq7a1           4 KFLIESNE--LVESSKIVMVGTNGENGYPNIKAMMRLKHDGLKKFWLSTNTSTRMVERLKKNNKICLYFVDDNKFAGLML   81 (141)
T ss_dssp             HHHHHHHH--HHHHCSEEEEEEECGGGCEEEEEEEEEEEETTTEEEEEEECCHHHHHHHHHCCEEEEEEECSSSSEEEEE
T ss_pred             HHHHHHHH--HHhcCCEEEEEEECCCCCEeEEEEEEEEeccCCEEEEEecCCChHHHHHHhCCccEEEEecCCCceEEEE
Confidence            45666554  35578899999999999999999999888766 4999999999999999999999999999999999999


Q ss_pred             EEEEEecCCcch-hHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeee
Q psy2497         117 EGHVEKTSDKES-DDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQ  195 (331)
Q Consensus       117 ~G~a~~~~~~~~-~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq  195 (331)
                      .|+|+++.+.+. .++|..                             .+.++|+++.   ..|+|++|+|+|++++||.
T Consensus        82 ~G~a~i~~d~~~~~~~w~~-----------------------------~~~~~~p~g~---~dp~~~llri~P~~~~~w~  129 (141)
T d2hq7a1          82 VGTIEILHDRASKEMLWTD-----------------------------GCEIYYPLGI---DDPDYTALCFTAEWGNYYR  129 (141)
T ss_dssp             EEEEEEECCHHHHHHHCCT-----------------------------THHHHCTTGG---GCTTEEEEEEEEEEEEEEE
T ss_pred             EEEEEEEcCHHHHHHHHHH-----------------------------HHHHhccCCC---CCCCEEEEEEEEeEEEEEc
Confidence            999999887554 445521                             1234666653   3467999999999999998


Q ss_pred             cCCC
Q psy2497         196 GQSD  199 (331)
Q Consensus       196 ~~~~  199 (331)
                      ..++
T Consensus       130 ~~~~  133 (141)
T d2hq7a1         130 HLKN  133 (141)
T ss_dssp             TTEE
T ss_pred             ccCc
Confidence            7543

>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: General stress protein 26
species: Nostoc punctiforme pcc 73102 [TaxId: 63737]

Probab=99.89  E-value=1.7e-23  Score=175.23  Aligned_cols=127  Identities=19%  Similarity=0.256  Sum_probs=103.0

Q ss_pred             CCCCceEEEEeecCCCCeeEEEEEEEEe-eCC-eEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCc
Q psy2497          49 IIEANAMFIATSTKNGIPSGRMVLLKSY-GKN-GFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDK  126 (331)
Q Consensus        49 ~~e~~~~~LATvd~dG~P~~R~V~~r~~-~~~-gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~  126 (331)
                      +++.++++|||+++||.|++|||.+... +++ .|||+|+..|+|+++|++||+|+|+|+++...++|+|+|+|+++.+.
T Consensus        14 l~~~~~~~laT~~~dG~P~~~pm~~~~~~~~~~~i~f~t~~~s~K~~~l~~np~vsl~~~~~~~~~~v~i~G~A~iv~d~   93 (143)
T d2i02a1          14 IKNIDYGMFTTVDDDGSLHSYPMSKSGDINSEATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQRYVSISGTSQLVKDR   93 (143)
T ss_dssp             HTTCCEEEEEEECTTSCEEEEEEECBCC---CCEEEEEEETTSHHHHHHHHCCEEEEEEEETTTTEEEEEEEEEEEECCH
T ss_pred             HhCCCEEEEEEECCCCCEEEEEEEEEEecCCCcEEEEEcCCcchhhhhhccCceEEEEEEeCCCCeEEEEEEEEEEEcCH
Confidence            3477899999999999999999999643 333 39999999999999999999999999999999999999999998765


Q ss_pred             ch-hHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceE
Q psy2497         127 ES-DDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRI  205 (331)
Q Consensus       127 ~~-~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~  205 (331)
                      +. +++|..                             .+.++|++++   ..+.+++|+|+|++++||+..++..++++
T Consensus        94 ~~~~~~w~~-----------------------------~~~~~~~~g~---~~p~~~liri~p~~~~~wd~~~~~~p~~~  141 (143)
T d2i02a1          94 NKMRELWKP-----------------------------ELQTWFPKGL---DEPDIALLKVNINQVNYWDSTSSFKPQTI  141 (143)
T ss_dssp             HHHHHHCCG-----------------------------GGGGTCTTGG---GCTTEEEEEEEEEEEEEEEGGGTTSCEEE
T ss_pred             HHHHHHHHH-----------------------------HHHHhccCCC---CCCCEEEEEEEeeEEEEEcCCCCCCceee
Confidence            43 445421                             1123455543   34679999999999999999988888877


Q ss_pred             EE
Q psy2497         206 VF  207 (331)
Q Consensus       206 ~f  207 (331)
                      .|
T Consensus       142 ~f  143 (143)
T d2i02a1         142 SF  143 (143)
T ss_dssp             EC
T ss_pred             EC
Confidence            64

>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Putative general stress protein BT1439
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.87  E-value=1.4e-22  Score=168.33  Aligned_cols=122  Identities=18%  Similarity=0.254  Sum_probs=100.3

Q ss_pred             CCCCceEEEEeecCCCCeeEEEEEEEEeeCC-eEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcc
Q psy2497          49 IIEANAMFIATSTKNGIPSGRMVLLKSYGKN-GFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKE  127 (331)
Q Consensus        49 ~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~-gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~  127 (331)
                      +.+..+++|||+++||.|++|+|.+...+++ .|||+|+.+|+|+.+|++||+|+|+|+++  .++|+|.|+|+++.+.+
T Consensus        12 l~~~~~~~laT~~~dG~P~~~p~~~~~~~~~~~i~f~t~~~s~k~~~i~~np~vsl~~~~~--~~~v~i~G~a~i~~d~~   89 (135)
T d2fhqa1          12 LQKCEVVTLASVNKEGYPRPVPMSKIAAEGISTIWMSTGADSLKTIDFLSNPKAGLCFQEK--GDSVALMGEVEVVTDEK   89 (135)
T ss_dssp             HHTCSEEEEEEECTTSCEEEEEEECCEEETTTEEEEEEETTSHHHHHHHHCCEEEEEEEET--TEEEEEEEEEEEECCHH
T ss_pred             HhcCCEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEEcCCChHHHHHhcCCeEEEEEEeC--CCEEEEEEEEEEEeCHH
Confidence            3467889999999999999999998777776 49999999999999999999999999986  47999999999988755


Q ss_pred             h-hHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeecCCCCccceE
Q psy2497         128 S-DDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQSDRVHDRI  205 (331)
Q Consensus       128 ~-~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~~~r~h~R~  205 (331)
                      . +++|..                             .+.++|+++.   ++|+|++++|.|++++||+.+.- +|+|+
T Consensus        90 ~~~~~w~~-----------------------------~~~~~~~~g~---~dp~~~viri~p~~~~~W~~g~~-~~~~~  135 (135)
T d2fhqa1          90 LKQELWQD-----------------------------WFIEHFPGGP---TDPGYVLLKFTANHATYWIEGTF-IHKKL  135 (135)
T ss_dssp             HHHHSCCG-----------------------------GGGGTCTTCT---TCTTEEEEEEEEEEEEEEETTEE-EEEEC
T ss_pred             HHHHHHHH-----------------------------HHHHhcCCCC---CCCCEEEEEEEEeEEEEEcCCCc-cccCC
Confidence            4 445521                             1234566553   45679999999999999998876 88774

>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Rv2074
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=8e-17  Score=131.81  Aligned_cols=112  Identities=17%  Similarity=0.051  Sum_probs=92.4

Q ss_pred             CCCCceEEEEeecCCCCeeEEEEEEEEeeCC-eEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcc
Q psy2497          49 IIEANAMFIATSTKNGIPSGRMVLLKSYGKN-GFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKE  127 (331)
Q Consensus        49 ~~e~~~~~LATvd~dG~P~~R~V~~r~~~~~-gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~  127 (331)
                      +.++++++|||+++||.|++++|.+....++ .|||+|...|+|+.+|++||+|+|++.++  .++|+|+|+|+++.   
T Consensus         8 L~~~~~~~LaT~~~dG~P~~~pv~~~~~~~~~~i~~~t~~~s~K~~~l~~~prvsl~v~d~--~~~v~i~G~a~i~~---   82 (125)
T d2asfa1           8 LSERHLAMLTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDG--ARWLSLEGRAAVNS---   82 (125)
T ss_dssp             TTSSCCEEEEEECTTSCEEEEEECCEEETTTTEEEEEEETTCHHHHHHHHHCEEEEEEEET--TEEEEEEEEEEEEC---
T ss_pred             HhcCCEEEEEEECCCCCEEEEEEEEeeecCCcEEEEEeCCCCeeeeeeecCCcEEEEEECC--CcEEEEEEEEEEeC---
Confidence            5688999999999999999999998765555 48999999999999999999999999865  47999999999865   


Q ss_pred             hhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEee
Q psy2497         128 SDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFW  194 (331)
Q Consensus       128 ~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfw  194 (331)
                                                |++.+.+.+..+.++|..+  .+. +..++++|.|+++-.+
T Consensus        83 --------------------------D~~~~~~~~~~~~~~y~~~--~~~-~~rvvi~i~p~r~~g~  120 (125)
T d2asfa1          83 --------------------------DIDAVRDAELRYAQRYRTP--RPN-PRRVVIEVQIERVLGS  120 (125)
T ss_dssp             --------------------------CHHHHHHHHHHHHHHSCCC--CCC-TTEEEEEEEEEEEEEC
T ss_pred             --------------------------CHHHHHHHHHHHHHHhcCC--CCC-CCEEEEEEEEEEEEEE
Confidence                                      4555566666677777543  334 5589999999999655

>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Rv2991
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.59  E-value=1.2e-14  Score=122.35  Aligned_cols=117  Identities=16%  Similarity=0.187  Sum_probs=87.3

Q ss_pred             CceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC---CeEEEEEEEEEecCCcch
Q psy2497          52 ANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL---KRSVRIEGHVEKTSDKES  128 (331)
Q Consensus        52 ~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~---~~qvri~G~a~~~~~~~~  128 (331)
                      ..+++|||++.||.|++++|.+. ++++.|||+|...|+|+++|++||+|++++..+..   .+.|+|.|+|+++.+.+.
T Consensus        21 ~~~~~LaT~~~dG~P~~~pv~~~-~~~~~l~~~t~~~s~k~~~l~~np~v~l~i~~~~~~~~~~~V~v~G~A~iv~d~~~   99 (160)
T d1rfea_          21 SRTGTLATIGPDGQPHLTAMWYA-VIDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDTYDTLRGVSFEGVAEIVEEPEA   99 (160)
T ss_dssp             CCCEEEEEECTTSCEEEEEECCE-EETTEEEEEEETTSHHHHHHHHCCEEEEEEEECSSGGGCEEEEEEEEEEEECCHHH
T ss_pred             CCEEEEEEECCCCCEEEEEEEEE-EcCCEEEEEecCCceEEeeecCCCeEEEEEEcCCcccceeEEEEEEEEEEeCCHHH
Confidence            45699999999999999999986 56678999999999999999999999999998653   367999999999876432


Q ss_pred             hHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCC-C------CCCCCceEEEEEeceEEEeeecCC
Q psy2497         129 DDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGD-Y------VPRPKHWGGYVVIPKVIEFWQGQS  198 (331)
Q Consensus       129 ~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~-~------~p~P~~~~~l~v~p~~iEfwq~~~  198 (331)
                                                   +.+.+..+..+|..+. .      ...++..++|+|.|.++.+|+...
T Consensus       100 -----------------------------~~~~~~~~~~ky~~~~~~~~~~~~~~~~~~~~~~ri~p~~i~~wd~~k  147 (160)
T d1rfea_         100 -----------------------------LHRVGVSVWERYTGPYTDECKPMVDQMMNKRVGVRIVARRTRSWDHRK  147 (160)
T ss_dssp             -----------------------------HHHHHHHHHHHHTCCCCGGGHHHHHHHTTTEEEEEEEEEEEEEEEGGG
T ss_pred             -----------------------------HHHHHHHHHHHhcCcCcchhhhhhhccCCCEEEEEEEEEEEEEEecCC
Confidence                                         2222222222221100 0      001245789999999999998753

>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Rv1155
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=1.1e-14  Score=120.85  Aligned_cols=78  Identities=17%  Similarity=0.056  Sum_probs=69.2

Q ss_pred             CCCceEEEEeecCCCCeeEEEEEEEEeeCC-eEEEEecCCCcchhhhhcCCcEEEEEEeCCCCeEEEEEEEEEecCCcc
Q psy2497          50 IEANAMFIATSTKNGIPSGRMVLLKSYGKN-GFVFFTNYNSRKGNELAENPQASLAFYWEPLKRSVRIEGHVEKTSDKE  127 (331)
Q Consensus        50 ~e~~~~~LATvd~dG~P~~R~V~~r~~~~~-gl~F~T~~~S~K~~eL~~np~val~f~~~~~~~qvri~G~a~~~~~~~  127 (331)
                      .+.++++|||+++||.|++++|++...+++ -|||+|...|+|+++|++||+|+|++.++....+|+|+|+|+++.+.+
T Consensus        10 ~~~~~~~LaTv~~dG~P~~~pv~~~~~~~~~~~~~~t~~~s~K~~nl~~nPrvsl~v~~~~~~~~v~i~G~a~~~~~~~   88 (142)
T d1w9aa_          10 SGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAA   88 (142)
T ss_dssp             HTCSEEEEEEECTTSCEEEEEEECEEETTTTEEEEEEECCCGGGGGGGTCCEEEEEEECSSSSCEEEEEEECEECCCCC
T ss_pred             ccCCeEEEEEECCCCCeEEEeeeeeeeccCceEEeccccHHHHHHHhccCCeEEEEEEcCCCceEEEEEEEEEEEeccc
Confidence            367899999999999999999998754444 378899999999999999999999999888889999999999987654

>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Alr5027
species: Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]

Probab=99.36  E-value=4.4e-12  Score=103.62  Aligned_cols=75  Identities=15%  Similarity=0.271  Sum_probs=64.7

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCC-eEEEEecCCCcchhhhhcCCcEEEEEEeCCC-------CeEEEEEEEEEe
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKN-GFVFFTNYNSRKGNELAENPQASLAFYWEPL-------KRSVRIEGHVEK  122 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~-gl~F~T~~~S~K~~eL~~np~val~f~~~~~-------~~qvri~G~a~~  122 (331)
                      +.++++|||++.||.|++-+|.+- ++++ .+||+|+..|+|.++|++||+|+|++..+..       ...|.+.|+++.
T Consensus         7 ~~~~~~LaTv~~dG~P~~s~v~y~-~~~~~~~~~~~s~~s~h~~Ni~~np~vSl~i~~~~~~~~~~~~~~~v~~~g~~~~   85 (135)
T d1vl7a_           7 EFQSAIISTISEQGIPNGSYAPFV-IDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAKTNQIFARRRLSFDCTATL   85 (135)
T ss_dssp             TCSEEEEEEECTTSCEEEEEEEEE-ECTTCCEEEEECTTSHHHHHHHHCCEEEEEEECCGGGCSSGGGCCEEEEEEEEEE
T ss_pred             hCCEEEEEEeCCCCCEEEEEEEEE-EcCCCCEEEEecchHHHHHHHHhCCceEEEEecCcccccccccceeEEEEEEEEE
Confidence            578899999999999999998875 4555 4999999999999999999999999986542       256999999999


Q ss_pred             cCCc
Q psy2497         123 TSDK  126 (331)
Q Consensus       123 ~~~~  126 (331)
                      +.++
T Consensus        86 i~~~   89 (135)
T d1vl7a_          86 IERE   89 (135)
T ss_dssp             ECTT
T ss_pred             ccCc
Confidence            8754

>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: 5-nitroimidazole resistance protein BT3078
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.35  E-value=2.7e-12  Score=107.53  Aligned_cols=112  Identities=15%  Similarity=0.186  Sum_probs=83.3

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC---------------CeEEE
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL---------------KRSVR  115 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~---------------~~qvr  115 (331)
                      +..++.|||++.||.|++.||.+. ++++.|||+|...++|+.+|++||+|++++..+..               -+.|.
T Consensus        18 ~~~~~~Lat~~~dG~P~~~Pv~f~-~~~~~iy~h~~~~~~K~~~l~~np~V~~~v~~~~~~~~~~~~~~~~~~~~y~sV~   96 (157)
T d2fg9a1          18 QADACFVGITDLEGNPYVVPMNFG-YENDTLYLHSGPEGGKIEMLQRNNNVCITFSLGHKLVYQHKQVACSYSMRSESAM   96 (157)
T ss_dssp             HCSCEEEEEECTTSCEEEEEECCE-EETTEEEEEECSCSHHHHHHHHCCEEEEEEECCCEEEEEC----CEEEEEEEEEE
T ss_pred             cCCEEEEEEECCCCCEEEEEEEee-eeCCEEEEEcCCccHHHHHHhcCCeEEEEEEcCCccccccccccccccccEEEEE
Confidence            456799999999999999999986 67778999999999999999999999999975442               14588


Q ss_pred             EEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCC----CceEEEEEeceEE
Q psy2497         116 IEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRP----KHWGGYVVIPKVI  191 (331)
Q Consensus       116 i~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P----~~~~~l~v~p~~i  191 (331)
                      +.|+|+++++                             .++..+.++.+.++|..+. .+.+    ++.++|+|.|+++
T Consensus        97 v~G~a~~v~d-----------------------------~~e~~~~~~~l~~k~~~~~-~~~~~~~~~~~~v~rI~i~~~  146 (157)
T d2fg9a1          97 CRGKVEFIED-----------------------------MEEKRHALDIIMRHYTKDQ-FSYSDPAVRNVKVWKVPVDQM  146 (157)
T ss_dssp             EEEECEEECS-----------------------------HHHHHHHHHHHHHTTCSSC-CCCCHHHHHTCEEEEEEEEEE
T ss_pred             EEEEEEEEcC-----------------------------HHHHHHHHHHHHHhhCCCC-CCcChHhhCCEEEEEEEEEEE
Confidence            9999998764                             3344444445555553221 1111    1347899999988


Q ss_pred             Ee
Q psy2497         192 EF  193 (331)
Q Consensus       192 Ef  193 (331)
                      .-
T Consensus       147 tg  148 (157)
T d2fg9a1         147 TG  148 (157)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1flma_ b.45.1.1 (A:) FMN-binding protein {Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: FMN-binding protein
species: Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]

Probab=99.31  E-value=2.2e-12  Score=104.61  Aligned_cols=76  Identities=16%  Similarity=0.132  Sum_probs=66.1

Q ss_pred             CCceEEEEeecCCCCeeEEEEEE---EEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC------CeEEEEEEEEE
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLL---KSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL------KRSVRIEGHVE  121 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~---r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~------~~qvri~G~a~  121 (331)
                      +...++|||+++|| |++.++++   .-.+++.|+|.|+..+.|.+||++||+|+|+|.+++.      .+.++|+|+|+
T Consensus        12 ~~~~~~laT~~~dg-P~v~p~~~~~~~v~dd~~i~~~~~~~~~k~~Ni~~np~V~l~~~~~~~~~~~~~~~~~~v~G~A~   90 (122)
T d1flma_          12 NEGVVAIATQGEDG-PHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAA   90 (122)
T ss_dssp             SCCEEEEEEECSSS-EEEEEEEGGGCEEETTTEEEEEESSCHHHHHHHHHCCEEEEEEEEEEEECSSSEEEEEEEEEEEE
T ss_pred             cCCeEEEEEECCCC-CcCccccceeEEEcCCCEEEEEecCCChHHHHHhhCCcEEEEEEccccccccCCceEEEEEEEEE
Confidence            56779999999999 99999975   3356678999999999999999999999999998642      47799999999


Q ss_pred             ecCCcc
Q psy2497         122 KTSDKE  127 (331)
Q Consensus       122 ~~~~~~  127 (331)
                      .+++.+
T Consensus        91 i~~dg~   96 (122)
T d1flma_          91 FRTDGP   96 (122)
T ss_dssp             EESSSH
T ss_pred             EecCHH
Confidence            988754

>d2htia1 b.45.1.1 (A:10-165) Hypothetical protein BH0577 {Bacillus halodurans [TaxId: 86665]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein BH0577
species: Bacillus halodurans [TaxId: 86665]

Probab=99.15  E-value=1.7e-10  Score=95.87  Aligned_cols=75  Identities=24%  Similarity=0.242  Sum_probs=63.2

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCCC-------------eEEEEE
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPLK-------------RSVRIE  117 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~~-------------~qvri~  117 (331)
                      +..++.|||++ +|.|++.||.+. ++++.|||+|...++|+.+|++||+|++++......             +-|.+.
T Consensus        14 ~~~~~~Lat~~-~g~P~vvPv~f~-~~~~~l~~~~~~~~~k~~~l~~np~v~~~v~~~~~~~~~~~~~~~t~~y~SV~v~   91 (156)
T d2htia1          14 KARTGFLGLST-NDQPYVIPLNFV-WHNHAIYFHGASEGRKIKMIEANPEVCFTICEDLGTIVSPVPAHTDTAYMSVIIF   91 (156)
T ss_dssp             HCCCEEEEEEE-TTEEEEEEECCE-EETTEEEEEEESSSHHHHHHHHCCEEEEEEEECC-------------CEEEEEEE
T ss_pred             cCCEEEEEEec-CCcEEEEEEEEE-EeCCEEEEecCcchhHHHHHhcCCeEEEEEEcccccccccCcccccccEEEEEEE
Confidence            45679999998 799999999995 567789999999999999999999999999755321             349999


Q ss_pred             EEEEecCCcc
Q psy2497         118 GHVEKTSDKE  127 (331)
Q Consensus       118 G~a~~~~~~~  127 (331)
                      |+|+++++.+
T Consensus        92 G~a~~v~d~e  101 (156)
T d2htia1          92 GTIEPVSAIE  101 (156)
T ss_dssp             EEEEECCCHH
T ss_pred             EEEEEeCCHH
Confidence            9999987643

>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Mll6688
species: Mesorhizobium loti [TaxId: 381]

Probab=99.12  E-value=4e-10  Score=93.17  Aligned_cols=74  Identities=19%  Similarity=0.184  Sum_probs=62.3

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC---CeEEEEEEEEEecCCcc
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL---KRSVRIEGHVEKTSDKE  127 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~---~~qvri~G~a~~~~~~~  127 (331)
                      +..++.|||++ +|.|++.||.+. ++++.|||+|.. ++|+.+|++||+|++++.....   -+.|.+.|+|+++++.+
T Consensus        17 ~~~~g~Lat~~-~g~P~v~Pv~f~-~~~~~iy~~t~~-~~K~~~l~~np~Vs~~v~~~~~~~~~~sV~v~G~a~~v~d~~   93 (148)
T d2hq9a1          17 ANRVGRLACAK-DGQPYVVPLYYA-YSDAHLYAFSMP-GKKIEWMRANPRVSVQVDEHGQGRGWKSVVVDGRYEELPDLI   93 (148)
T ss_dssp             HCCEEEEEEEE-TTEEEEEEEECE-EETTEEEEEECS-SHHHHHHHHCCEEEEEEEEECSTTCEEEEEEEEEEEECCSCG
T ss_pred             cCCEEEEEEEe-CCcEEEEEEEEE-EECCEEEEEeCc-hHHHHHHhCCCeEEEEEEeccccceeEEEEEEEEEEEEeCcc
Confidence            45779999999 899999999996 577789999965 7899999999999999965333   25599999999998743

>d2fura1 b.45.1.1 (A:16-208) Hypothetical protein Ta1372 {Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Ta1372
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.63  E-value=8.3e-08  Score=83.09  Aligned_cols=73  Identities=15%  Similarity=0.058  Sum_probs=61.0

Q ss_pred             CCceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEeCCC-------------CeEEEEE
Q psy2497          51 EANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYWEPL-------------KRSVRIE  117 (331)
Q Consensus        51 e~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~~~~-------------~~qvri~  117 (331)
                      +..++.|||++ +|.|.+-||.+. ++++.||||+...++|...|++||+|++++.....             -+-|.+.
T Consensus        15 ~~~~~~la~~~-~g~PyvvP~~f~-~~~~~ly~H~a~~g~k~~~l~~np~V~~~v~~~~~~v~~~~~~~~t~~YrSViv~   92 (193)
T d2fura1          15 RNFTCTVSFID-GGIPYAIPMMLA-SEGKTIYLHGSMKSRIYGILKTGQLIAISLLEINGIVLAKEIKNNSINYVSALIF   92 (193)
T ss_dssp             HCSEEEEEEEE-TTEEEEEEEECE-EETTEEEEEEETTSHHHHHHHTTCCEEEEEEEEEEEEECSBGGGCEEEEEEEEEE
T ss_pred             hCCEEEEEEee-CCeEEEEEEEEE-EeCCEEEEEecCcchHHHHhhcCCcEEEEEEecceeecCCCcCccceEEEEEEEE
Confidence            45679999996 799999999985 56778999999999999999999999999864321             1578888


Q ss_pred             EEEEecCC
Q psy2497         118 GHVEKTSD  125 (331)
Q Consensus       118 G~a~~~~~  125 (331)
                      |+++++.+
T Consensus        93 G~a~~v~d  100 (193)
T d2fura1          93 GRPYEIDD  100 (193)
T ss_dssp             ECCEECCC
T ss_pred             EEEEEecC
Confidence            88887664

>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.58  E-value=5.4e-07  Score=79.93  Aligned_cols=115  Identities=16%  Similarity=0.226  Sum_probs=84.6

Q ss_pred             CceEEEEeecCC--CCeeEEEEEEEEeeCCe-EEEEecCCCcchhhhhcCCcEEEEEEeCCC-----CeEEEEEEEEEec
Q psy2497          52 ANAMFIATSTKN--GIPSGRMVLLKSYGKNG-FVFFTNYNSRKGNELAENPQASLAFYWEPL-----KRSVRIEGHVEKT  123 (331)
Q Consensus        52 ~~~~~LATvd~d--G~P~~R~V~~r~~~~~g-l~F~T~~~S~K~~eL~~np~val~f~~~~~-----~~qvri~G~a~~~  123 (331)
                      .+.++|||++.+  |.|.+-.|.+- .+.+| +||+++.-|.|.++|..||+|+|++..++.     ..-+++.|.++.+
T Consensus        15 ~~~~~LsT~~~~~~G~P~~S~v~~a-~d~~G~p~~~~S~la~Ht~NL~~d~rvSL~v~~~~~~~~~~~~R~tl~g~~~~~   93 (238)
T d2arza1          15 EYRAVLSTHSKKWPGFPFGSVVPYC-LDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQL   93 (238)
T ss_dssp             CSEEEEEEECSSSTTCEEEEEEECE-ECTTSCEEEEEETTSHHHHHHHHCCEEEEEEECTTCSSTTSSCEEEEEEEEEEC
T ss_pred             CCeEEEEecCCCCCCCceEEEEEEE-ECCCCCEEEEEecchHhhHhhhcCCcEEEEEEcCCccccccccceeeeeeeEec
Confidence            356899999765  99999988875 55555 999999999999999999999999987652     3569999999987


Q ss_pred             CCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEeceEEEeeecC
Q psy2497         124 SDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPKVIEFWQGQ  197 (331)
Q Consensus       124 ~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~~iEfwq~~  197 (331)
                      ++++.+                              .....+.+.+++......-..|..|+|.|.++-|-.+-
T Consensus        94 ~~~e~~------------------------------~~~~~~~~rhP~~~~~~~~~Df~~~~l~~~~~~~V~GF  137 (238)
T d2arza1          94 AEEEVA------------------------------AAAERYYRYFPESADYHRVHDFDFWVLQPVQWRFIGGF  137 (238)
T ss_dssp             CHHHHH------------------------------HHHHHHHHHCGGGTTCBTTBBEEEEEEEEEEEEEECTT
T ss_pred             CchHHH------------------------------HHHHHHHHhccchhhhcccCcEEEEEEeeeEEEEEcCC
Confidence            654321                              11222333444332233446799999999999988553

>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypotheical protein CAC3491
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.49  E-value=6.5e-08  Score=79.08  Aligned_cols=72  Identities=11%  Similarity=0.121  Sum_probs=57.6

Q ss_pred             cCCCCccceEEEeccCCCCCCCCCCCcCCC-CceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEc
Q psy2497         196 GQSDRVHDRIVFKRPVPGEPLGPHSHEGED-GWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKT  274 (331)
Q Consensus       196 ~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~-gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~  274 (331)
                      ...|.||.|.+...           ..+++ .+.|+|+..|+|.     ++|+.||+|||+|+++...+||+|.|+++.+
T Consensus        25 ~~dG~P~~~p~~~~-----------~~~~~~~l~f~T~~~s~K~-----~~l~~np~vsl~~~~~~~~~~v~i~G~a~i~   88 (141)
T d2hq7a1          25 GENGYPNIKAMMRL-----------KHDGLKKFWLSTNTSTRMV-----ERLKKNNKICLYFVDDNKFAGLMLVGTIEIL   88 (141)
T ss_dssp             CGGGCEEEEEEEEE-----------EEETTTEEEEEEECCHHHH-----HHHHHCCEEEEEEECSSSSEEEEEEEEEEEE
T ss_pred             CCCCCEeEEEEEEE-----------EeccCCEEEEEecCCChHH-----HHHHhCCccEEEEecCCCceEEEEEEEEEEE
Confidence            45578999955443           13334 4999999999996     3799999999999999999999999999999


Q ss_pred             CHHHH-HHHH
Q psy2497         275 SDKES-DDYF  283 (331)
Q Consensus       275 ~~~es-~~yf  283 (331)
                      .+.+. .++|
T Consensus        89 ~d~~~~~~~w   98 (141)
T d2hq7a1          89 HDRASKEMLW   98 (141)
T ss_dssp             CCHHHHHHHC
T ss_pred             cCHHHHHHHH
Confidence            87665 5555

>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: General stress protein 26
species: Nostoc punctiforme pcc 73102 [TaxId: 63737]

Probab=98.26  E-value=8.7e-07  Score=72.08  Aligned_cols=72  Identities=14%  Similarity=0.186  Sum_probs=55.0

Q ss_pred             CCCCccceEEEeccCCCCCCCCCCCcCCCC-ceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEcC
Q psy2497         197 QSDRVHDRIVFKRPVPGEPLGPHSHEGEDG-WYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKTS  275 (331)
Q Consensus       197 ~~~r~h~R~~f~k~~~~~~~~~~~~~~~~g-w~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~~  275 (331)
                      ..|.||.|-+....          ..++++ ..|+|...|+|.     ++|..||+|||+|+++...++|+|+|.|+-+.
T Consensus        27 ~dG~P~~~pm~~~~----------~~~~~~~i~f~t~~~s~K~-----~~l~~np~vsl~~~~~~~~~~v~i~G~A~iv~   91 (143)
T d2i02a1          27 DDGSLHSYPMSKSG----------DINSEATLWFFTYAGSHKV-----TEIEHHEQVNVSFSSPEQQRYVSISGTSQLVK   91 (143)
T ss_dssp             TTSCEEEEEEECBC----------C---CCEEEEEEETTSHHH-----HHHHHCCEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred             CCCCEEEEEEEEEE----------ecCCCcEEEEEcCCcchhh-----hhhccCceEEEEEEeCCCCeEEEEEEEEEEEc
Confidence            45789999654430          122333 779999999996     37999999999999999999999999999886


Q ss_pred             HH-HHHHHH
Q psy2497         276 DK-ESDDYF  283 (331)
Q Consensus       276 ~~-es~~yf  283 (331)
                      +. ..+++|
T Consensus        92 d~~~~~~~w  100 (143)
T d2i02a1          92 DRNKMRELW  100 (143)
T ss_dssp             CHHHHHHHC
T ss_pred             CHHHHHHHH
Confidence            54 455665

>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Putative general stress protein BT1439
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.96  E-value=5.8e-06  Score=66.48  Aligned_cols=70  Identities=19%  Similarity=0.125  Sum_probs=54.0

Q ss_pred             cCCCCccceEEEeccCCCCCCCCCCCcCCCC-ceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEc
Q psy2497         196 GQSDRVHDRIVFKRPVPGEPLGPHSHEGEDG-WYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKT  274 (331)
Q Consensus       196 ~~~~r~h~R~~f~k~~~~~~~~~~~~~~~~g-w~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~  274 (331)
                      ...|.|+.|.+...           ..++++ +.|.|...|+|.     ++|..||+|||+|+.+  .++|+|.|+|+-+
T Consensus        24 ~~dG~P~~~p~~~~-----------~~~~~~~i~f~t~~~s~k~-----~~i~~np~vsl~~~~~--~~~v~i~G~a~i~   85 (135)
T d2fhqa1          24 NKEGYPRPVPMSKI-----------AAEGISTIWMSTGADSLKT-----IDFLSNPKAGLCFQEK--GDSVALMGEVEVV   85 (135)
T ss_dssp             CTTSCEEEEEEECC-----------EEETTTEEEEEEETTSHHH-----HHHHHCCEEEEEEEET--TEEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEEEE-----------EECCCCEEEEEEcCCChHH-----HHHhcCCeEEEEEEeC--CCEEEEEEEEEEE
Confidence            44567998876532           123443 778999999996     3799999999999887  7899999999999


Q ss_pred             CHHHH-HHHH
Q psy2497         275 SDKES-DDYF  283 (331)
Q Consensus       275 ~~~es-~~yf  283 (331)
                      .+.+. +++|
T Consensus        86 ~d~~~~~~~w   95 (135)
T d2fhqa1          86 TDEKLKQELW   95 (135)
T ss_dssp             CCHHHHHHSC
T ss_pred             eCHHHHHHHH
Confidence            87665 4444

>d2vpaa1 b.45.1.1 (A:2-195) NimA-related protein DR0842 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: NimA-related protein DR0842
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.95  E-value=6.8e-06  Score=70.58  Aligned_cols=77  Identities=17%  Similarity=0.101  Sum_probs=59.9

Q ss_pred             CCceEEEEeecC----CCCeeEEEEEEEEeeC-CeEEEEecCCCcchhhhhcCCcEEEEEEeCC-------------CCe
Q psy2497          51 EANAMFIATSTK----NGIPSGRMVLLKSYGK-NGFVFFTNYNSRKGNELAENPQASLAFYWEP-------------LKR  112 (331)
Q Consensus        51 e~~~~~LATvd~----dG~P~~R~V~~r~~~~-~gl~F~T~~~S~K~~eL~~np~val~f~~~~-------------~~~  112 (331)
                      ...++.|||++.    +|.|.+-||.+.--.+ +.|||++...++|...|.+||+|++++....             .-+
T Consensus        32 ~~~~~~la~~~~g~~~~~~Py~vPl~f~~~~~~~~ly~H~a~~g~k~~~l~~~~~v~~~v~~~~~~v~~~~~~~~t~~Y~  111 (194)
T d2vpaa1          32 RGTIARVATLWQGEDGAAFPFITPLAYAYRPEQGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQFLPSNSPLELSVQYR  111 (194)
T ss_dssp             HCCEEEEEEEEECTTSCEEEEEEEEECEEETTTTEEEEECCCCCSSBSSCSSEEEEEEEEEEEEEEECCSSGGGCEEEEE
T ss_pred             hCCEEEEEEecCCCCCCCCCEEEeEEeEEecCCCEEEEEecCccHHHHHHhcCCceEEEEEeccEEecCCCcCccCceEE
Confidence            345688999852    3459999998863223 3599999999999999999999999998532             136


Q ss_pred             EEEEEEEEEecCCcc
Q psy2497         113 SVRIEGHVEKTSDKE  127 (331)
Q Consensus       113 qvri~G~a~~~~~~~  127 (331)
                      -|.+.|+|+++++++
T Consensus       112 SVi~~G~a~~v~d~e  126 (194)
T d2vpaa1         112 SVMVFGTARVLAGED  126 (194)
T ss_dssp             EEEEEEEEEECCHHH
T ss_pred             EEEEEEEEEEcCCHH
Confidence            689999999987643

>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Cellular repressor of E1A-stimulated genes CREG1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=6.6e-05  Score=62.99  Aligned_cols=116  Identities=20%  Similarity=0.154  Sum_probs=78.7

Q ss_pred             CceEEEEeec----CCCCeeEEEEEEEE---eeCCe-EEEEecCCCcchhhhhcCCcEEEEEEeCCCC------------
Q psy2497          52 ANAMFIATST----KNGIPSGRMVLLKS---YGKNG-FVFFTNYNSRKGNELAENPQASLAFYWEPLK------------  111 (331)
Q Consensus        52 ~~~~~LATvd----~dG~P~~R~V~~r~---~~~~g-l~F~T~~~S~K~~eL~~np~val~f~~~~~~------------  111 (331)
                      .+..+|+|+.    .+|.|-+-.|.+-.   .+.+| .+|+-..-+...++|++||+|+|++...+..            
T Consensus        18 ~~~g~LsTiS~~~~~~G~P~~s~v~~adg~~~~~~G~P~~llS~la~ht~Nl~~~~~vSL~v~~~~~~~~~~~~~dp~~p   97 (170)
T d1xhna1          18 SDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSPLQLSVSNLQENPYATLTMTLAQTNFCKKHGFDPQSP   97 (170)
T ss_dssp             CSEEEEEEECCCGGGTTCEEEEEEECBSCSTTCCCSCCEEEECTTSHHHHHHHHCCEEEEEEEGGGTTHHHHHTCCTTST
T ss_pred             CCEEEEEEcccCCCCCCccceeEEEEeccCCCCCCCCEEEEEcChhHhHHHHhhCCCeEEEEEecCCCcccccCCCccCC
Confidence            3468899984    47999998887642   22335 6999999999999999999999999653321            


Q ss_pred             --eEEEEEEEEEecCCcchhHHHhcCCccccceeecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCceEEEEEece
Q psy2497         112 --RSVRIEGHVEKTSDKESDDYFQSRPYASKIGAIASDQSRPCESRDQMSKITEELRQKYKEGDYVPRPKHWGGYVVIPK  189 (331)
Q Consensus       112 --~qvri~G~a~~~~~~~~~~~~~~~p~~~~~~~~~s~q~~~i~d~~~l~~~~~~~~~~~~~~~~~p~P~~~~~l~v~p~  189 (331)
                        --|.|.|+++.+++++.+.                              ..+.+.+.+|+-..-..-.+|..|++.++
T Consensus        98 ~~aRlTl~G~~~~v~~~e~~~------------------------------a~~~yl~rHP~a~~w~~~~df~f~~l~i~  147 (170)
T d1xhna1          98 LCVHIMLSGTVTKVNETEMDI------------------------------AKHSLFIRHPEMKTWPSSHNWFFAKLNIT  147 (170)
T ss_dssp             TSCEEEEEEEEEECCGGGHHH------------------------------HHHHHHHHCGGGGGSCGGGCCEEEEEEEE
T ss_pred             CCcEEEEEEEEEECCcHHHHH------------------------------HHHHHHHHHHHHHhCcccCCeEEEEEEee
Confidence              2499999999987654311                              11122222322110111256999999999


Q ss_pred             EEEeeecC
Q psy2497         190 VIEFWQGQ  197 (331)
Q Consensus       190 ~iEfwq~~  197 (331)
                      +|.|..+-
T Consensus       148 ~i~~vgGF  155 (170)
T d1xhna1         148 NIWVLDYF  155 (170)
T ss_dssp             EEEEECSS
T ss_pred             EEEEECcc
Confidence            99888554

>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Rv1155
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.78  E-value=1.4e-05  Score=64.65  Aligned_cols=66  Identities=15%  Similarity=-0.029  Sum_probs=51.8

Q ss_pred             cCCCCccceEEEeccCCCCCCCCCCCcCC-CC-ceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeE
Q psy2497         196 GQSDRVHDRIVFKRPVPGEPLGPHSHEGE-DG-WYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEK  273 (331)
Q Consensus       196 ~~~~r~h~R~~f~k~~~~~~~~~~~~~~~-~g-w~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~  273 (331)
                      ...|.||.+.++..            .++ ++ +.|.|...|+|. +    .|+.||+|||+|..+...++|+|+|+|+.
T Consensus        21 ~~dG~P~~~pv~~~------------~~~~~~~~~~~t~~~s~K~-~----nl~~nPrvsl~v~~~~~~~~v~i~G~a~~   83 (142)
T d1w9aa_          21 KHDGRPQLSNVQYH------------FDPRKLLIQVSIAEPRAKT-R----NLRRDPRASILVDADDGWSYAVAEGTAQL   83 (142)
T ss_dssp             CTTSCEEEEEEECE------------EETTTTEEEEEEECCCGGG-G----GGGTCCEEEEEEECSSSSCEEEEEEECEE
T ss_pred             CCCCCeEEEeeeee------------eeccCceEEeccccHHHHH-H----HhccCCeEEEEEEcCCCceEEEEEEEEEE
Confidence            44577888887543            233 33 556788899996 3    69999999999999999999999999998


Q ss_pred             cCHHH
Q psy2497         274 TSDKE  278 (331)
Q Consensus       274 ~~~~e  278 (331)
                      +.+++
T Consensus        84 ~~~~~   88 (142)
T d1w9aa_          84 TPPAA   88 (142)
T ss_dssp             CCCCC
T ss_pred             Eeccc
Confidence            87544

>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Rv2991
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.03  E-value=0.00031  Score=57.13  Aligned_cols=67  Identities=16%  Similarity=0.099  Sum_probs=51.2

Q ss_pred             CCCCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeec---CCCCceEEEEEEeeE
Q psy2497         197 QSDRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYW---EPLKRSVRIEGHVEK  273 (331)
Q Consensus       197 ~~~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W---~~l~RQVri~G~v~~  273 (331)
                      ..|.||.+-++..            .+++.+.|.+...|+|.     +.|..||+||++|.=   ..-.+.|.|.|+|+.
T Consensus        31 ~dG~P~~~pv~~~------------~~~~~l~~~t~~~s~k~-----~~l~~np~v~l~i~~~~~~~~~~~V~v~G~A~i   93 (160)
T d1rfea_          31 PDGQPHLTAMWYA------------VIDGEIWLETKAKSQKA-----VNLRRDPRVSFLLEDGDTYDTLRGVSFEGVAEI   93 (160)
T ss_dssp             TTSCEEEEEECCE------------EETTEEEEEEETTSHHH-----HHHHHCCEEEEEEEECSSGGGCEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEE------------EcCCEEEEEecCCceEE-----eeecCCCeEEEEEEcCCcccceeEEEEEEEEEE
Confidence            3456776666554            35667999999999996     379999999999963   234578999999999


Q ss_pred             cCHHHHH
Q psy2497         274 TSDKESD  280 (331)
Q Consensus       274 ~~~~es~  280 (331)
                      +.+.+..
T Consensus        94 v~d~~~~  100 (160)
T d1rfea_          94 VEEPEAL  100 (160)
T ss_dssp             ECCHHHH
T ss_pred             eCCHHHH
Confidence            8876643

>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Rv2074
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.92  E-value=0.00038  Score=54.96  Aligned_cols=65  Identities=15%  Similarity=-0.063  Sum_probs=49.2

Q ss_pred             cCCCCccceEEEeccCCCCCCCCCCCcCC-CCceEeeecCCCccccccchhHhhCCceEEEeecCCCCceEEEEEEeeEc
Q psy2497         196 GQSDRVHDRIVFKRPVPGEPLGPHSHEGE-DGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPLKRSVRIEGHVEKT  274 (331)
Q Consensus       196 ~~~~r~h~R~~f~k~~~~~~~~~~~~~~~-~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l~RQVri~G~v~~~  274 (331)
                      ...|.||.+-++...           ..+ +-+.|.|...|+|.     +.|..||+|||++.  .-.+-|.|+|+|+-+
T Consensus        20 ~~dG~P~~~pv~~~~-----------~~~~~~i~~~t~~~s~K~-----~~l~~~prvsl~v~--d~~~~v~i~G~a~i~   81 (125)
T d2asfa1          20 RADNSPHVVAVGFTF-----------DPKTHIARVITTGGSQKA-----VNADRSGLAVLSQV--DGARWLSLEGRAAVN   81 (125)
T ss_dssp             CTTSCEEEEEECCEE-----------ETTTTEEEEEEETTCHHH-----HHHHHHCEEEEEEE--ETTEEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEEEee-----------ecCCcEEEEEeCCCCeee-----eeeecCCcEEEEEE--CCCcEEEEEEEEEEe
Confidence            345778888775430           123 34789999999996     37999999999985  347899999999998


Q ss_pred             CHHH
Q psy2497         275 SDKE  278 (331)
Q Consensus       275 ~~~e  278 (331)
                      .+.+
T Consensus        82 ~D~~   85 (125)
T d2asfa1          82 SDID   85 (125)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            7654

>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Mll6688
species: Mesorhizobium loti [TaxId: 381]

Probab=95.29  E-value=0.0092  Score=47.48  Aligned_cols=60  Identities=18%  Similarity=0.173  Sum_probs=42.8

Q ss_pred             CCccceEEEeccCCCCCCCCCCCcCCCCceEeeecCCCccccccchhHhhCCceEEEeecCCC---CceEEEEEEeeEcC
Q psy2497         199 DRVHDRIVFKRPVPGEPLGPHSHEGEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEPL---KRSVRIEGHVEKTS  275 (331)
Q Consensus       199 ~r~h~R~~f~k~~~~~~~~~~~~~~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~l---~RQVri~G~v~~~~  275 (331)
                      +.||..-++--            .+++.+.|.+ .+++|.     +.|..||+||+++....-   -|.|.|.|+++.++
T Consensus        29 g~P~v~Pv~f~------------~~~~~iy~~t-~~~~K~-----~~l~~np~Vs~~v~~~~~~~~~~sV~v~G~a~~v~   90 (148)
T d2hq9a1          29 GQPYVVPLYYA------------YSDAHLYAFS-MPGKKI-----EWMRANPRVSVQVDEHGQGRGWKSVVVDGRYEELP   90 (148)
T ss_dssp             TEEEEEEEECE------------EETTEEEEEE-CSSHHH-----HHHHHCCEEEEEEEEECSTTCEEEEEEEEEEEECC
T ss_pred             CcEEEEEEEEE------------EECCEEEEEe-CchHHH-----HHHhCCCeEEEEEEeccccceeEEEEEEEEEEEEe
Confidence            45666655543            3444455666 568885     369999999999975433   36799999999987


Q ss_pred             H
Q psy2497         276 D  276 (331)
Q Consensus       276 ~  276 (331)
                      +
T Consensus        91 d   91 (148)
T d2hq9a1          91 D   91 (148)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: 5-nitroimidazole resistance protein BT3078
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=95.06  E-value=0.0072  Score=48.55  Aligned_cols=49  Identities=20%  Similarity=0.205  Sum_probs=38.2

Q ss_pred             CCCCceEeeecCCCccccccchhHhhCCceEEEee---------------cCCCCceEEEEEEeeEcCH
Q psy2497         223 GEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFY---------------WEPLKRSVRIEGHVEKTSD  276 (331)
Q Consensus       223 ~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~---------------W~~l~RQVri~G~v~~~~~  276 (331)
                      +++...|.+...|+|.     +.|..||+||++|.               |.-.-+.|.|.|+++.+++
T Consensus        43 ~~~~iy~h~~~~~~K~-----~~l~~np~V~~~v~~~~~~~~~~~~~~~~~~~~y~sV~v~G~a~~v~d  106 (157)
T d2fg9a1          43 ENDTLYLHSGPEGGKI-----EMLQRNNNVCITFSLGHKLVYQHKQVACSYSMRSESAMCRGKVEFIED  106 (157)
T ss_dssp             ETTEEEEEECSCSHHH-----HHHHHCCEEEEEEECCCEEEEEC----CEEEEEEEEEEEEEECEEECS
T ss_pred             eCCEEEEEcCCccHHH-----HHHhcCCeEEEEEEcCCccccccccccccccccEEEEEEEEEEEEEcC
Confidence            4566888888889995     36999999999983               1122478999999999875

>d2htia1 b.45.1.1 (A:10-165) Hypothetical protein BH0577 {Bacillus halodurans [TaxId: 86665]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein BH0577
species: Bacillus halodurans [TaxId: 86665]

Probab=94.46  E-value=0.019  Score=45.75  Aligned_cols=51  Identities=22%  Similarity=0.226  Sum_probs=39.3

Q ss_pred             CCCCceEeeecCCCccccccchhHhhCCceEEEee-----cCC--------CCceEEEEEEeeEcCHHH
Q psy2497         223 GEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFY-----WEP--------LKRSVRIEGHVEKTSDKE  278 (331)
Q Consensus       223 ~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~-----W~~--------l~RQVri~G~v~~~~~~e  278 (331)
                      +++...|.+...++|.     +.|..||+||++|.     |..        .-|.|.|.|+|+.+++.+
T Consensus        38 ~~~~l~~~~~~~~~k~-----~~l~~np~v~~~v~~~~~~~~~~~~~~~t~~y~SV~v~G~a~~v~d~e  101 (156)
T d2htia1          38 HNHAIYFHGASEGRKI-----KMIEANPEVCFTICEDLGTIVSPVPAHTDTAYMSVIIFGTIEPVSAIE  101 (156)
T ss_dssp             ETTEEEEEEESSSHHH-----HHHHHCCEEEEEEEECC-------------CEEEEEEEEEEEECCCHH
T ss_pred             eCCEEEEecCcchhHH-----HHHhcCCeEEEEEEcccccccccCcccccccEEEEEEEEEEEEeCCHH
Confidence            4566888888889995     37999999999983     111        246799999999998755

>d1flma_ b.45.1.1 (A:) FMN-binding protein {Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: FMN-binding protein
species: Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]

Probab=94.30  E-value=0.0095  Score=46.43  Aligned_cols=52  Identities=8%  Similarity=-0.076  Sum_probs=42.5

Q ss_pred             CCCCceEeeecCCCccccccchhHhhCCceEEEeecCC------CCceEEEEEEeeEcCHHHH
Q psy2497         223 GEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEP------LKRSVRIEGHVEKTSDKES  279 (331)
Q Consensus       223 ~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~------l~RQVri~G~v~~~~~~es  279 (331)
                      +++...|.+..-|.|.     +.|++||+|+|+|.=++      .+|-++|.|+++-+.+.+.
T Consensus        40 dd~~i~~~~~~~~~k~-----~Ni~~np~V~l~~~~~~~~~~~~~~~~~~v~G~A~i~~dg~~   97 (122)
T d1flma_          40 DGNRIVVPVGGMHKTE-----ANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPE   97 (122)
T ss_dssp             TTTEEEEEESSCHHHH-----HHHHHCCEEEEEEEEEEEECSSSEEEEEEEEEEEEEESSSHH
T ss_pred             CCCEEEEEecCCChHH-----HHHhhCCcEEEEEEccccccccCCceEEEEEEEEEEecCHHH
Confidence            5677999999988885     47999999999996432      4688999999999987653

>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Alr5027
species: Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]

Probab=93.57  E-value=0.053  Score=41.99  Aligned_cols=48  Identities=10%  Similarity=0.056  Sum_probs=37.5

Q ss_pred             CCceEeeecCCCccccccchhHhhCCceEEEeecCC-------CCceEEEEEEeeEcCHH
Q psy2497         225 DGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEP-------LKRSVRIEGHVEKTSDK  277 (331)
Q Consensus       225 ~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~-------l~RQVri~G~v~~~~~~  277 (331)
                      ....|++..-|+|.     +.|..||+|||++.=+.       ....|.+.|.++.++++
T Consensus        35 ~~~~~~~s~~s~h~-----~Ni~~np~vSl~i~~~~~~~~~~~~~~~v~~~g~~~~i~~~   89 (135)
T d1vl7a_          35 KNIYIYVSGLAVHT-----KNIEANPLVNVLFVDDEAKTNQIFARRRLSFDCTATLIERE   89 (135)
T ss_dssp             CCEEEEECTTSHHH-----HHHHHCCEEEEEEECCGGGCSSGGGCCEEEEEEEEEEECTT
T ss_pred             CCEEEEecchHHHH-----HHHHhCCceEEEEecCcccccccccceeEEEEEEEEEccCc
Confidence            34788888889996     37999999999985221       22679999999999744

>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Cellular repressor of E1A-stimulated genes CREG1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.64  E-value=0.16  Score=41.49  Aligned_cols=46  Identities=24%  Similarity=0.336  Sum_probs=34.4

Q ss_pred             hhHhhCCceEEEeecCCCC--------------ceEEEEEEeeEcCHHHH----HHHHhcCCCC
Q psy2497         244 HLKAENPQASLAFYWEPLK--------------RSVRIEGHVEKTSDKES----DDYFQSRPYA  289 (331)
Q Consensus       244 ~~l~~np~aal~f~W~~l~--------------RQVri~G~v~~~~~~es----~~yf~~Rp~~  289 (331)
                      +.|+.||+|||++-+.+-.              --|.+.|++++++++|.    .+||..-|..
T Consensus        67 ~Nl~~~~~vSL~v~~~~~~~~~~~~~dp~~p~~aRlTl~G~~~~v~~~e~~~a~~~yl~rHP~a  130 (170)
T d1xhna1          67 SNLQENPYATLTMTLAQTNFCKKHGFDPQSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEM  130 (170)
T ss_dssp             HHHHHCCEEEEEEEGGGTTHHHHHTCCTTSTTSCEEEEEEEEEECCGGGHHHHHHHHHHHCGGG
T ss_pred             HHHhhCCCeEEEEEecCCCcccccCCCccCCCCcEEEEEEEEEECCcHHHHHHHHHHHHHHHHH
Confidence            3699999999999875432              13999999999998875    3566655543

>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.59  E-value=0.5  Score=40.14  Aligned_cols=61  Identities=10%  Similarity=0.056  Sum_probs=47.2

Q ss_pred             CCceEeeecCCCccccccchhHhhCCceEEEeecCC-----CCceEEEEEEeeEcCHHHHH----HHHhcCCCCc
Q psy2497         225 DGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEP-----LKRSVRIEGHVEKTSDKESD----DYFQSRPYAS  290 (331)
Q Consensus       225 ~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~-----l~RQVri~G~v~~~~~~es~----~yf~~Rp~~s  290 (331)
                      +...|+...-|.+.     +.|..||++||+|.+++     ....+.+.|.++++++++-+    .|+...|...
T Consensus        44 G~p~~~~S~la~Ht-----~NL~~d~rvSL~v~~~~~~~~~~~~R~tl~g~~~~~~~~e~~~~~~~~~~rhP~~~  113 (238)
T d2arza1          44 GRPLILISRIAQHT-----HNLQADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESA  113 (238)
T ss_dssp             SCEEEEEETTSHHH-----HHHHHCCEEEEEEECTTCSSTTSSCEEEEEEEEEECCHHHHHHHHHHHHHHCGGGT
T ss_pred             CCEEEEEecchHhh-----HhhhcCCcEEEEEEcCCccccccccceeeeeeeEecCchHHHHHHHHHHHhccchh
Confidence            44778888888885     37999999999998875     23469999999999998644    6776666443

>d2fura1 b.45.1.1 (A:16-208) Hypothetical protein Ta1372 {Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Ta1372
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=88.01  E-value=0.15  Score=42.55  Aligned_cols=51  Identities=12%  Similarity=-0.007  Sum_probs=39.6

Q ss_pred             CCCCceEeeecCCCccccccchhHhhCCceEEEeecCC-------------CCceEEEEEEeeEcCHHH
Q psy2497         223 GEDGWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEP-------------LKRSVRIEGHVEKTSDKE  278 (331)
Q Consensus       223 ~~~gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~-------------l~RQVri~G~v~~~~~~e  278 (331)
                      +++...|++...++|.     +.|..||++|++|.-..             --|.|.|.|+++.+.+++
T Consensus        39 ~~~~ly~H~a~~g~k~-----~~l~~np~V~~~v~~~~~~v~~~~~~~~t~~YrSViv~G~a~~v~d~e  102 (193)
T d2fura1          39 EGKTIYLHGSMKSRIY-----GILKTGQLIAISLLEINGIVLAKEIKNNSINYVSALIFGRPYEIDDTE  102 (193)
T ss_dssp             ETTEEEEEEETTSHHH-----HHHHTTCCEEEEEEEEEEEEECSBGGGCEEEEEEEEEEECCEECCCHH
T ss_pred             eCCEEEEEecCcchHH-----HHhhcCCcEEEEEEecceeecCCCcCccceEEEEEEEEEEEEEecCHH
Confidence            3456778888889995     36999999999986431             248999999999877654

>d2ptfa1 b.45.1.4 (A:15-220) Uncharacterized protein MTH863 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: MTH863-like
domain: Uncharacterized protein MTH863
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.62  E-value=0.46  Score=39.86  Aligned_cols=56  Identities=7%  Similarity=0.087  Sum_probs=47.1

Q ss_pred             CceEEEEeecCCCCeeEEEEEEEEeeCCeEEEEecCCCcchhhhhcCCcEEEEEEe
Q psy2497          52 ANAMFIATSTKNGIPSGRMVLLKSYGKNGFVFFTNYNSRKGNELAENPQASLAFYW  107 (331)
Q Consensus        52 ~~~~~LATvd~dG~P~~R~V~~r~~~~~gl~F~T~~~S~K~~eL~~np~val~f~~  107 (331)
                      ..-..++|.+++|.|+.-||.++.-+++.+.+-.=..|+=..||.+++.+.+.|-+
T Consensus        19 I~E~IvtT~~~~g~~N~AP~GI~~~~~~~v~~~pF~~S~T~~Nl~~~~~~vin~td   74 (206)
T d2ptfa1          19 LYETIVVTWDDSMVGNAAPIGVLCTGDDTVTLYLYQGTRTVENVLNNGRFTVNVTL   74 (206)
T ss_dssp             EEEEEEEEECTTCCEEEEEEEEEECSSSEEEEEEETTCHHHHHHHHHSEEEEEECC
T ss_pred             EEEEEEEECCCCCCeeccceEEEEcCCCeEEEEEcCCCchHHHHhhcCeEEEEeCC
Confidence            44578999999999999999987544456777777889999999999999999953

>d2vpaa1 b.45.1.1 (A:2-195) NimA-related protein DR0842 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: NimA-related protein DR0842
species: Deinococcus radiodurans [TaxId: 1299]

Probab=86.84  E-value=0.28  Score=40.64  Aligned_cols=51  Identities=14%  Similarity=0.050  Sum_probs=40.1

Q ss_pred             CceEeeecCCCccccccchhHhhCCceEEEeecCC-------------CCceEEEEEEeeEcCHHHHHH
Q psy2497         226 GWYYERLFPQPKQGIQYLHLKAENPQASLAFYWEP-------------LKRSVRIEGHVEKTSDKESDD  281 (331)
Q Consensus       226 gw~f~tl~pS~K~~~~~~~~l~~np~aal~f~W~~-------------l~RQVri~G~v~~~~~~es~~  281 (331)
                      -+.|.....++|.     +.|..||+||++|....             --|.|.|.|+|+.++++|-..
T Consensus        66 ~ly~H~a~~g~k~-----~~l~~~~~v~~~v~~~~~~v~~~~~~~~t~~Y~SVi~~G~a~~v~d~e~~~  129 (194)
T d2vpaa1          66 DLVYHTNVVGRLR-----ANAGQGHPATLEVSEIGQFLPSNSPLELSVQYRSVMVFGTARVLAGEDARA  129 (194)
T ss_dssp             EEEEECCCCCSSB-----SSCSSEEEEEEEEEEEEEEECCSSGGGCEEEEEEEEEEEEEEECCHHHHHH
T ss_pred             EEEEEecCccHHH-----HHHhcCCceEEEEEeccEEecCCCcCccCceEEEEEEEEEEEEcCCHHHHH
Confidence            3666666678885     25899999999998642             378999999999999887543

>d2imla1 b.45.1.4 (A:1-189) Hypothetical protein AF1834 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: MTH863-like
domain: Hypothetical protein AF1834
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.17  E-value=0.98  Score=37.26  Aligned_cols=55  Identities=11%  Similarity=0.028  Sum_probs=43.7

Q ss_pred             CceEEEEeecCCCCeeEEEEEEEEeeCC-eEEEEecCCCcchhhhhcCCcEEEEEE
Q psy2497          52 ANAMFIATSTKNGIPSGRMVLLKSYGKN-GFVFFTNYNSRKGNELAENPQASLAFY  106 (331)
Q Consensus        52 ~~~~~LATvd~dG~P~~R~V~~r~~~~~-gl~F~T~~~S~K~~eL~~np~val~f~  106 (331)
                      ..-..++|.+++|.|++-||.+.--++. .+++.-=..|+=..+|.+++.+.+.|-
T Consensus        12 I~EvIvtT~~~~g~~n~AP~Gi~~~~~~~~~~~~pf~~S~T~~Nl~~~~~~vvN~t   67 (189)
T d2imla1          12 INEIIAITENEDGSWNAAPIGIIVEDSSSDTAKAKLYRNRTRANLERSGVLFANVT   67 (189)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEESCTTSSEEEEECCSSHHHHHHHHHCEEEEEEC
T ss_pred             eeEEEEEecCCCCCEeecceeeEeecCCCCeEEEecCCCchHHHHHhCCeEEEEEc
Confidence            4557899999999999999998754443 355444446899999999999999985