Psyllid ID: psy2523

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-
MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRKENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR
cEEEEEEEEccccEEEEEcccccccccHHHHHHHHHHHHcccccccEEEEcccEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcccccccHHcccccEEEHHHHHHcccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEccccccEEEEEEcccHHHHccccccccccccccccccccccccccEEEcccccccccccccccccccEEEEEcccccEEEEEEEEcccccccEEEEEEEEEccccEEEEEEEEEEcccccccccEEEEEccccccccccEEEEEEEEEEEEccccEEEEEEEEEccccEEEEEEEEEEEccccccccccccEEEEEEcccccccEEEEEEEEEccccccccccEEEEEEEEEEccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEcccccEEEEEEccHHHHHHcccccccccccccccccccccccccEEEcccccccccccccccccccEEEEEcccccEEccc
ccEEEEEEcccccEEEEEcccccccHHHHHHHHHHHHHcHHcccccEEEEccEEEEEEEcccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHEHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccHHcccEcccccccEEcccEEEEEHHHHHEEEEcccccEEEEEEEEEEEEEEEEccccccEEccccEEEEEcccccccccccccccccccccccccccEEEEccEEEEEEEEcccccccEEEEEcccccEEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEEEccccccccEEEEEEEccccccccEEEEcEEEEEEcccccEEEEEEEEcccccEEEEEEEEEccccccccccccccEEEEEEEEEccccEEEEEEEEEEccccccccccccEEEEEEccccEEEEEHHHHHHHHEHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccccccHHHcccccccccccEEcccEEEHHHHHHHEEEEcccccEEEEEEEEEEEEEEEEccccccEEccccEEEEEcccccccccccccccccccccccccccEEEEccEEEEEEEEcccccccEEEEccccccEEccc
migglfvynhkgevLISRVYrddigrnavDAFRVNVIHARqqvrspvtniartSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKiseeniknnFFIDVMQSYFGKISEENIKNNFVLIYELLddrylgmeserGRASYILKIVHDrkentyksfnpssfpspseildfgypqnsdtgVLKTFILQQgvksqskeEQSQITSQVTGqigwrregikyrrNELFLDVLEYVNLLmspqgqtlsAHVAGKVVMKSYlsgmpeckfginDKIVMEakggssakssgltvaggddvgrsgkpvvviddcqfhqcvklskfetehsisfippdgefELMRYrttkdialpfrvIPLVREATRTKMEVKVVLKSQFKAsllgqkievriptplntsGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDtkkkwtrppismnfevpfapsgfkvRYLKVfepklnysdhdviKWVRYIGRSglyetrkentyksfnpssfpspseildfgypqnsdtgVLKTFILQQgvksqskeEQSQITSQVTGqigwrregikyrrNELFLDVLEYVNLLmspqgqtlsAHVAGKVVMKSYlsgmpeckfginDKIVMEakggssakssgltvaggddvgrsgkpvvviddcqfhqcvklskfetehsisfippdgefelmr
migglfvynhkgevLISRVYRDDIGRNAVDAFRVNViharqqvrspvtniARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVksqskeeqsqitsqvtgqigwrregiKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGgssakssgltvaggDDVGRSGKPVVVIDDCQFHQCVKLskfetehsisfippdgEFELMRYRttkdialpfrvIPLVREATRTKMEVKVVLKSqfkasllgqkievriptplntsgVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLEtdtkkkwtrppismnfevpfapsgFKVRYLKVFEpklnysdhdvikWVRYIGRSGLYETRKENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVksqskeeqsqitsqvtgqigwrregiKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGgssakssgltvaggDDVGRSGKPVVVIDDCQFHQCVKLskfetehsisfippdgefelmr
MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKENTYKsfnpssfpspsEILDFGYPQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEakggssakssgLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRKENTYKsfnpssfpspsEILDFGYPQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEakggssakssgLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR
**GGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDR******************ILDFGYPQNSDTGVLKTFILQ*****************VTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVM***********************SGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYET*******************ILDFGYPQNSDTGVLKTFILQ*****************VTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVM***********************SGKPVVVIDDCQFHQCVKLSKFETEHSISFI**********
MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHD**********************************************************************YRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKI*****************************VVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSA*****************ISMNFEVPFAPSGFKVRYLKVF*********DVIKWVRYIGRSGLYETRKENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGV*********************RREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVME**************************VVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR
MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQ*********************IGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEA*************AGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRKENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQ*********************IGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEA*************AGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR
MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVKS*****QSQITSQ*TGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAK***********************PVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRKENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQG*******************IGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAK***********************PVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFEL**
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRKENTYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query691 2.2.26 [Sep-21-2011]
Q5ZMP6433 AP-2 complex subunit mu O yes N/A 0.625 0.997 0.751 0.0
Q6P856435 AP-2 complex subunit mu O yes N/A 0.625 0.993 0.746 0.0
Q801Q8435 AP-2 complex subunit mu O N/A N/A 0.625 0.993 0.744 0.0
P84092435 AP-2 complex subunit mu O yes N/A 0.625 0.993 0.746 0.0
P84091435 AP-2 complex subunit mu O yes N/A 0.625 0.993 0.746 0.0
Q4R706435 AP-2 complex subunit mu O N/A N/A 0.625 0.993 0.746 0.0
Q96CW1435 AP-2 complex subunit mu O yes N/A 0.625 0.993 0.746 0.0
Q3ZC13435 AP-2 complex subunit mu O yes N/A 0.625 0.993 0.746 0.0
Q7ZW98436 AP-2 complex subunit mu-B yes N/A 0.623 0.988 0.743 0.0
Q6NWK2436 AP-2 complex subunit mu-A yes N/A 0.623 0.988 0.741 0.0
>sp|Q5ZMP6|AP2M1_CHICK AP-2 complex subunit mu OS=Gallus gallus GN=AP2M1 PE=2 SV=1 Back     alignment and function desciption
 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/503 (75%), Positives = 405/503 (80%), Gaps = 71/503 (14%)

Query: 1   MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 60
           MIGGLF+YNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFH+KR
Sbjct: 1   MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60

Query: 61  ANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEE 120
           +NIWLAAVTKQNVNAAMVFEFL K  DVM +YF                     GKISEE
Sbjct: 61  SNIWLAAVTKQNVNAAMVFEFLYKMCDVMTAYF---------------------GKISEE 99

Query: 121 NIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKENTYKSFNPSSFPSPSEILDFG 180
           NIKNNFVLIYELLD                                        EILDFG
Sbjct: 100 NIKNNFVLIYELLD----------------------------------------EILDFG 119

Query: 181 YPQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYV 240
           YPQNS+TG LKTFI QQG+KSQ+KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE V
Sbjct: 120 YPQNSETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESV 179

Query: 241 NLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGD 300
           NLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E +G  +A          D
Sbjct: 180 NLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTA----------D 229

Query: 301 DVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIP 360
           + G+SGK  + IDDC FHQCV+LSKF++E SISFIPPDGEFELMRYRTTKDI LPFRVIP
Sbjct: 230 ETGKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIP 289

Query: 361 LVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAI 420
           LVRE  RTK+EVKVV+KS FK SLL QKIEVRIPTPLNTSGVQ+IC+KGKAKYKASENAI
Sbjct: 290 LVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAI 349

Query: 421 VWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEPKL 480
           VWKIKRMAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KVRYLKVFEPKL
Sbjct: 350 VWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKL 409

Query: 481 NYSDHDVIKWVRYIGRSGLYETR 503
           NYSDHDVIKWVRYIGRSG+YETR
Sbjct: 410 NYSDHDVIKWVRYIGRSGIYETR 432
Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. AP50 is a subunit of the plasma membrane adaptor. The complex binds polyphosphoinositide-containing lipids.
Gallus gallus (taxid: 9031)
>sp|Q6P856|AP2M1_XENTR AP-2 complex subunit mu OS=Xenopus tropicalis GN=ap2m1 PE=2 SV=1 Back     alignment and function description
>sp|Q801Q8|AP2M1_XENLA AP-2 complex subunit mu OS=Xenopus laevis GN=ap2m1 PE=2 SV=1 Back     alignment and function description
>sp|P84092|AP2M1_RAT AP-2 complex subunit mu OS=Rattus norvegicus GN=Ap2m1 PE=1 SV=1 Back     alignment and function description
>sp|P84091|AP2M1_MOUSE AP-2 complex subunit mu OS=Mus musculus GN=Ap2m1 PE=1 SV=1 Back     alignment and function description
>sp|Q4R706|AP2M1_MACFA AP-2 complex subunit mu OS=Macaca fascicularis GN=AP2M1 PE=2 SV=1 Back     alignment and function description
>sp|Q96CW1|AP2M1_HUMAN AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 PE=1 SV=2 Back     alignment and function description
>sp|Q3ZC13|AP2M1_BOVIN AP-2 complex subunit mu OS=Bos taurus GN=AP2M1 PE=1 SV=1 Back     alignment and function description
>sp|Q7ZW98|AP2MB_DANRE AP-2 complex subunit mu-B OS=Danio rerio GN=ap2m1b PE=2 SV=1 Back     alignment and function description
>sp|Q6NWK2|AP2MA_DANRE AP-2 complex subunit mu-A OS=Danio rerio GN=ap2m1a PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query691
58376449438 AGAP007131-PA [Anopheles gambiae str. PE 0.632 0.997 0.819 0.0
91090604438 PREDICTED: similar to AGAP007131-PA [Tri 0.632 0.997 0.817 0.0
332375919438 unknown [Dendroctonus ponderosae] 0.632 0.997 0.815 0.0
242012566436 AP-2 complex subunit mu-1, putative [Ped 0.629 0.997 0.815 0.0
157134145435 clathrin coat associated protein ap-50 [ 0.628 0.997 0.818 0.0
357620962440 hypothetical protein KGM_11335 [Danaus p 0.635 0.997 0.819 0.0
24649014437 AP-50, isoform A [Drosophila melanogaste 0.630 0.997 0.809 0.0
195399572437 GJ14336 [Drosophila virilis] gi|19414195 0.630 0.997 0.807 0.0
195113759437 GI21976 [Drosophila mojavensis] gi|19391 0.630 0.997 0.807 0.0
289739595437 adaptor protein complex AP-2 mu1 [Glossi 0.630 0.997 0.801 0.0
>gi|58376449|ref|XP_308629.2| AGAP007131-PA [Anopheles gambiae str. PEST] gi|170035332|ref|XP_001845524.1| clathrin coat assembly protein AP50 [Culex quinquefasciatus] gi|55245721|gb|EAA04151.2| AGAP007131-PA [Anopheles gambiae str. PEST] gi|167877265|gb|EDS40648.1| clathrin coat assembly protein AP50 [Culex quinquefasciatus] Back     alignment and taxonomy information
 Score =  820 bits (2118), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/503 (81%), Positives = 422/503 (83%), Gaps = 66/503 (13%)

Query: 1   MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 60
           MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR
Sbjct: 1   MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 60

Query: 61  ANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEE 120
           ANIWLAAVTKQNVNAAMVFEFLLK IDVMQS                     YFGKISEE
Sbjct: 61  ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQS---------------------YFGKISEE 99

Query: 121 NIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKENTYKSFNPSSFPSPSEILDFG 180
           NIKNNFVLIYELLD                                        EILDFG
Sbjct: 100 NIKNNFVLIYELLD----------------------------------------EILDFG 119

Query: 181 YPQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLEYV 240
           YPQNSDTGVLKTFI QQG+K+ +KEEQ+QITSQVTGQIGWRREGIKYRRNELFLDVLEYV
Sbjct: 120 YPQNSDTGVLKTFITQQGIKTATKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEYV 179

Query: 241 NLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGD 300
           NLLMSPQGQ LSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKG      SG++    +
Sbjct: 180 NLLMSPQGQVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKG-----RSGISGNADN 234

Query: 301 DVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIP 360
           +  RSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDI+LPFRVIP
Sbjct: 235 EASRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRVIP 294

Query: 361 LVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAI 420
           LVRE  RTKMEVKVVLKS FK SLLGQKIEV+IPTPLNTSGVQLICLKGKAKYKASENAI
Sbjct: 295 LVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAI 354

Query: 421 VWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEPKL 480
           VWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEPKL
Sbjct: 355 VWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEPKL 414

Query: 481 NYSDHDVIKWVRYIGRSGLYETR 503
           NYSDHDVIKWVRYIGRSGLYETR
Sbjct: 415 NYSDHDVIKWVRYIGRSGLYETR 437

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91090604|ref|XP_973047.1| PREDICTED: similar to AGAP007131-PA [Tribolium castaneum] gi|270013333|gb|EFA09781.1| hypothetical protein TcasGA2_TC011923 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|332375919|gb|AEE63100.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|242012566|ref|XP_002427003.1| AP-2 complex subunit mu-1, putative [Pediculus humanus corporis] gi|212511237|gb|EEB14265.1| AP-2 complex subunit mu-1, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|157134145|ref|XP_001663168.1| clathrin coat associated protein ap-50 [Aedes aegypti] gi|108881420|gb|EAT45645.1| AAEL003106-PA, partial [Aedes aegypti] Back     alignment and taxonomy information
>gi|357620962|gb|EHJ72965.1| hypothetical protein KGM_11335 [Danaus plexippus] Back     alignment and taxonomy information
>gi|24649014|ref|NP_732744.1| AP-50, isoform A [Drosophila melanogaster] gi|28571823|ref|NP_651049.3| AP-50, isoform B [Drosophila melanogaster] gi|281362279|ref|NP_001163686.1| AP-50, isoform C [Drosophila melanogaster] gi|125774931|ref|XP_001358717.1| GA20066 [Drosophila pseudoobscura pseudoobscura] gi|194765342|ref|XP_001964786.1| GF23377 [Drosophila ananassae] gi|194911034|ref|XP_001982273.1| AP-50 [Drosophila erecta] gi|195053998|ref|XP_001993913.1| GH22222 [Drosophila grimshawi] gi|195145180|ref|XP_002013574.1| GL24218 [Drosophila persimilis] gi|195331029|ref|XP_002032205.1| GM26435 [Drosophila sechellia] gi|195444218|ref|XP_002069767.1| GK11695 [Drosophila willistoni] gi|195502596|ref|XP_002098293.1| AP-50 [Drosophila yakuba] gi|195572884|ref|XP_002104425.1| AP-50 [Drosophila simulans] gi|6492274|gb|AAF14248.1|AF110232_1 clathrin-associated adaptor complex AP-2 medium chain [Drosophila melanogaster] gi|3150082|emb|CAA06785.1| clathrin-associated protein [Drosophila melanogaster] gi|7300860|gb|AAF56001.1| AP-50, isoform A [Drosophila melanogaster] gi|17944592|gb|AAL48183.1| SD05403p [Drosophila melanogaster] gi|28381420|gb|AAF56002.3| AP-50, isoform B [Drosophila melanogaster] gi|54638458|gb|EAL27860.1| GA20066 [Drosophila pseudoobscura pseudoobscura] gi|78183001|gb|ABB29496.1| putative clathrin-associated protein [Drosophila erecta] gi|78183003|gb|ABB29497.1| putative clathrin-associated protein [Drosophila orena] gi|78183005|gb|ABB29498.1| putative clathrin-associated protein [Drosophila teissieri] gi|190615058|gb|EDV30582.1| GF23377 [Drosophila ananassae] gi|190656911|gb|EDV54143.1| AP-50 [Drosophila erecta] gi|193895783|gb|EDV94649.1| GH22222 [Drosophila grimshawi] gi|194102517|gb|EDW24560.1| GL24218 [Drosophila persimilis] gi|194121148|gb|EDW43191.1| GM26435 [Drosophila sechellia] gi|194165852|gb|EDW80753.1| GK11695 [Drosophila willistoni] gi|194184394|gb|EDW98005.1| AP-50 [Drosophila yakuba] gi|194200352|gb|EDX13928.1| AP-50 [Drosophila simulans] gi|272477104|gb|ACZ94982.1| AP-50, isoform C [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195399572|ref|XP_002058393.1| GJ14336 [Drosophila virilis] gi|194141953|gb|EDW58361.1| GJ14336 [Drosophila virilis] Back     alignment and taxonomy information
>gi|195113759|ref|XP_002001435.1| GI21976 [Drosophila mojavensis] gi|193918029|gb|EDW16896.1| GI21976 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|289739595|gb|ADD18545.1| adaptor protein complex AP-2 mu1 [Glossina morsitans morsitans] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query691
FB|FBgn0263351437 AP-2mu "Adaptor Protein comple 0.467 0.739 0.890 4.7e-207
UNIPROTKB|Q5ZMP6433 AP2M1 "AP-2 complex subunit mu 0.461 0.736 0.823 1.1e-194
UNIPROTKB|F1PQ79436 AP2M1 "Uncharacterized protein 0.496 0.786 0.770 3.8e-194
ZFIN|ZDB-GENE-040426-1103436 ap2m1b "adaptor-related protei 0.463 0.733 0.812 5.5e-193
UNIPROTKB|Q3ZC13435 AP2M1 "AP-2 complex subunit mu 0.496 0.788 0.766 5.5e-193
UNIPROTKB|Q96CW1435 AP2M1 "AP-2 complex subunit mu 0.496 0.788 0.766 5.5e-193
UNIPROTKB|I3LL07435 AP2M1 "Uncharacterized protein 0.496 0.788 0.766 5.5e-193
MGI|MGI:1298405435 Ap2m1 "adaptor-related protein 0.496 0.788 0.766 5.5e-193
RGD|620135435 Ap2m1 "adaptor-related protein 0.496 0.788 0.766 5.5e-193
UNIPROTKB|P84092435 Ap2m1 "AP-2 complex subunit mu 0.496 0.788 0.766 5.5e-193
FB|FBgn0263351 AP-2mu "Adaptor Protein complex 2, mu subunit" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1499 (532.7 bits), Expect = 4.7e-207, Sum P(2) = 4.7e-207
 Identities = 293/329 (89%), Positives = 302/329 (91%)

Query:   175 EILDFGYPQNSDTGVLKTFILQQGVKSQSKEEQSQITSQVTGQIGWRREGIKYRRNELFL 234
             EILDFGYPQN+D+G LKTFI QQG+KS +KEEQ QITSQVTGQIGWRREGIKYRRNELFL
Sbjct:   114 EILDFGYPQNTDSGTLKTFITQQGIKSATKEEQMQITSQVTGQIGWRREGIKYRRNELFL 173

Query:   235 DVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEXXXXXXXXXXXL 294
             DVLEYVNLLMSPQGQ LSAHVAGKVVMKSYLSGMPECKFGINDKIVME           L
Sbjct:   174 DVLEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMESKGRG------L 227

Query:   295 TVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIAL 354
             +     +  RSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDI+L
Sbjct:   228 SGNSEAETSRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDISL 287

Query:   355 PFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYK 414
             PFRVIPLVRE  RTKMEVKVVLKS FK SLLGQKIEV+IPTPLNTSGVQLICLKGKAKYK
Sbjct:   288 PFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYK 347

Query:   415 ASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLK 474
             ASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLK
Sbjct:   348 ASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLK 407

Query:   475 VFEPKLNYSDHDVIKWVRYIGRSGLYETR 503
             VFEPKLNYSDHDV+KWVRYIGRSGLYETR
Sbjct:   408 VFEPKLNYSDHDVVKWVRYIGRSGLYETR 436
GO:0006901 "vesicle coating" evidence=TAS
GO:0007269 "neurotransmitter secretion" evidence=NAS
GO:0008021 "synaptic vesicle" evidence=TAS
GO:0016183 "synaptic vesicle coating" evidence=TAS
GO:0030135 "coated vesicle" evidence=TAS
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0033227 "dsRNA transport" evidence=IMP
GO:0008565 "protein transporter activity" evidence=IMP
GO:0030122 "AP-2 adaptor complex" evidence=IMP
GO:0006897 "endocytosis" evidence=IMP
UNIPROTKB|Q5ZMP6 AP2M1 "AP-2 complex subunit mu" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PQ79 AP2M1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1103 ap2m1b "adaptor-related protein complex 2, mu 1 subunit, b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZC13 AP2M1 "AP-2 complex subunit mu" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q96CW1 AP2M1 "AP-2 complex subunit mu" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LL07 AP2M1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1298405 Ap2m1 "adaptor-related protein complex 2, mu 1 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620135 Ap2m1 "adaptor-related protein complex 2, mu 1 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P84092 Ap2m1 "AP-2 complex subunit mu" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q99186AP2M_YEASTNo assigned EC number0.31930.68010.9572yesN/A
Q6NWK2AP2MA_DANRENo assigned EC number0.74160.62370.9885yesN/A
P35603AP2M_CAEELNo assigned EC number0.71030.62510.9795yesN/A
Q7ZW98AP2MB_DANRENo assigned EC number0.74350.62370.9885yesN/A
Q09718AP2M_SCHPONo assigned EC number0.33910.62080.9618yesN/A
Q5NVF7AP2M1_PONABNo assigned EC number0.74050.62510.9931yesN/A
Q96CW1AP2M1_HUMANNo assigned EC number0.74650.62510.9931yesN/A
P54672AP2M_DICDINo assigned EC number0.47080.61790.9726yesN/A
P84091AP2M1_MOUSENo assigned EC number0.74650.62510.9931yesN/A
P84092AP2M1_RATNo assigned EC number0.74650.62510.9931yesN/A
Q4R706AP2M1_MACFANo assigned EC number0.74650.62510.9931N/AN/A
Q3ZC13AP2M1_BOVINNo assigned EC number0.74650.62510.9931yesN/A
Q801Q8AP2M1_XENLANo assigned EC number0.74450.62510.9931N/AN/A
Q5ZMP6AP2M1_CHICKNo assigned EC number0.75140.62510.9976yesN/A
Q6P856AP2M1_XENTRNo assigned EC number0.74650.62510.9931yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query691
cd09251263 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi 1e-156
cd09250268 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi 4e-90
cd07954239 cd07954, AP_MHD_Cterm, C-terminal domain of adapto 1e-78
pfam00928228 pfam00928, Adap_comp_sub, Adaptor complexes medium 5e-78
cd09258270 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of med 2e-71
cd09253271 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medi 3e-70
cd09259264 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of med 5e-66
cd09251 263 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi 7e-60
cd09250 268 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi 5e-47
cd09252248 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi 5e-43
pfam00928 228 pfam00928, Adap_comp_sub, Adaptor complexes medium 2e-41
cd09258 270 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of med 1e-38
cd09259 264 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of med 3e-34
cd09253 271 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medi 1e-30
cd09252 248 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi 5e-28
cd07954 239 cd07954, AP_MHD_Cterm, C-terminal domain of adapto 1e-27
cd09255308 cd09255, AP-like_stonins_MHD, Mu homology domain ( 1e-23
cd09260254 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of med 2e-22
cd09261254 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of med 7e-20
cd09263314 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) 4e-16
cd09255 308 cd09255, AP-like_stonins_MHD, Mu homology domain ( 5e-15
cd09261 254 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of med 4e-14
cd09260 254 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of med 1e-13
cd09262309 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) 7e-13
cd09263 314 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) 1e-10
cd09262 309 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) 5e-06
>gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2 Back     alignment and domain information 
 Score =  451 bits (1163), Expect = e-156
 Identities = 159/279 (56%), Positives = 198/279 (70%), Gaps = 18/279 (6%)

Query: 227 YRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGG 286
           YR+NE+FLDV+E VNLLMS  G  L A V G +VMK++LSGMPECKFG+NDK+V+E +G 
Sbjct: 1   YRKNEVFLDVVESVNLLMSSTGTVLRADVDGVIVMKAFLSGMPECKFGLNDKLVLEKEGK 60

Query: 287 SSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRY 346
           + +                 K  V +DDC+FHQCV+LSKF++E +ISFIPPDGEFELMRY
Sbjct: 61  AKSGDKA------------AKGSVELDDCKFHQCVRLSKFDSERTISFIPPDGEFELMRY 108

Query: 347 RTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLIC 406
           R T++I LPF+V+PLV+E  RTK+E KV +KS F   L    + V+IPTP NT+ V +  
Sbjct: 109 RITENINLPFKVLPLVKEVGRTKLEYKVKIKSNFPPKLFATNVVVKIPTPKNTAKVTVSV 168

Query: 407 LKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDT-KKKWTRPPISMNFEVP-FA 464
            KGKAKY   ENAIVWKIK+  GM E+ LSAE+ELL T +  KKW+RPPISM+FEVP F 
Sbjct: 169 SKGKAKYDPEENAIVWKIKKFPGMTESTLSAEVELLSTTSELKKWSRPPISMDFEVPMFT 228

Query: 465 PSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 503
            SG +VRYLKVFE       +  +KWVRYI R+G YE R
Sbjct: 229 ASGLRVRYLKVFEKSN----YKTVKWVRYITRAGSYEIR 263

AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, -2, -3, and -4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This family corresponds to the C-terminal domain of heterotetrameric clathrin-associated adaptor protein complex 2 (AP-2) medium mu2 subunit. Mu2 is ubiquitously expressed in mammals. In higher eukaryotes, AP-2 plays a critical role in clathrin-mediated endocytosis from the plasma membrane in different cells. The membrane-anchored cargo molecules can be linked to the outer lattice of CCVs by AP-2. Those cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. Tyrosine-based endocytotic signals are one of the most important sorting signals. They are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. These kinds of sorting signals can be recognized by the C-terminal domain of AP-2 mu2 subunit, also known as Y-X-X-Phi signal-binding domain that contains two hydrophobic pockets, one for the tyrosine-binding and one for the bulky hydrophobic residue-binding. Since the Y-X-X-Phi binding site is buried in the core structure of AP-2, a phosphorylation induced conformational change is required when the cargo molecules binds to AP-2. In addition, the C-terminal domain of mu2 subunit has been shown to bind other molecules. For instance, it can bind phosphoinositides, in particular PI[4,5]P2, which might be involved in the recognition process of the tyrosine-based signals. It can also interact with synaptotagmins, a family of important modulators of calcium-dependent neurosecretion within the synaptic vesicle (SV) membrane. Since many of the other endocytic adaptors responsible for biogenesis of synaptic vesicles exist, in the absence of AP-2, clathrin-mediated endocytosis can still occur. However, the cells may not survive in the complete absence of clathrin as well as AP-2. Length = 263
>gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) Back     alignment and domain information
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family Back     alignment and domain information
>gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211364 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4 Back     alignment and domain information
>gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit in epithelial cell-specific clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2 Back     alignment and domain information
>gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family Back     alignment and domain information
>gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit in epithelial cell-specific clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211364 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4 Back     alignment and domain information
>gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) Back     alignment and domain information
>gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of adaptor-like proteins (AP-like), stonins Back     alignment and domain information
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit in neuron-specific adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211374 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-2 Back     alignment and domain information
>gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of adaptor-like proteins (AP-like), stonins Back     alignment and domain information
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit in neuron-specific adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-1 (also called Stoned B-like factor) Back     alignment and domain information
>gnl|CDD|211374 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-2 Back     alignment and domain information
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-1 (also called Stoned B-like factor) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 691
KOG0938|consensus446 100.0
KOG0937|consensus424 100.0
KOG2740|consensus418 100.0
PF00928262 Adap_comp_sub: Adaptor complexes medium subunit fa 100.0
KOG0938|consensus 446 100.0
KOG2635|consensus512 100.0
KOG0937|consensus 424 100.0
KOG2740|consensus 418 100.0
KOG2677|consensus922 100.0
PF00928 262 Adap_comp_sub: Adaptor complexes medium subunit fa 99.93
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 99.86
KOG2677|consensus 922 99.77
COG5030152 APS2 Clathrin adaptor complex, small subunit [Intr 99.43
KOG0934|consensus145 99.36
KOG0935|consensus143 99.16
KOG0936|consensus182 99.08
PF10291257 muHD: Muniscin C-terminal mu homology domain; Inte 98.77
KOG3343|consensus175 98.74
COG5541187 RET3 Vesicle coat complex COPI, zeta subunit [Post 97.11
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 96.02
PF03164415 Mon1: Trafficking protein Mon1; InterPro: IPR00435 90.43
COG5122134 TRS23 Transport protein particle (TRAPP) complex s 87.94
KOG2635|consensus 512 86.89
PF08923119 MAPKK1_Int: Mitogen-activated protein kinase kinas 86.79
PF04099142 Sybindin: Sybindin-like family ; InterPro: IPR0072 82.69
>KOG0938|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.8e-106  Score=814.96  Aligned_cols=433  Identities=58%  Similarity=0.972  Sum_probs=397.3

Q ss_pred             CeEEEEEEeCCCCEEEEEcccCCcchhhHHHHHHhhccccCCCCCCeEEeCCEEEEEEeeCcEEEEEEEcCCcCHHHHHH
Q psy2523           1 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFE   80 (691)
Q Consensus         1 Mi~~i~I~~~~G~~li~r~y~~~~~~~~~~~f~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~~~e   80 (691)
                      ||+|+||+|.+||+||.|.||+|+.+++.|+||.+++++ ...++|+..++++.|+|+++++||+|++|++|.|.++++|
T Consensus         1 misglfi~n~rGevlink~fr~dlkrs~~diFRv~vi~n-~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~e   79 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINN-LDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVFE   79 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhc-cccCCCeeEecceeEEEEeeccEEEEEEecCCCchhhHHH
Confidence            999999999999999999999999999999999999976 5679999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccccccccccceeeeecccccCCCHHHHHhhHHHHHHHhcccccCccccccchhhhHHHhhhcccc
Q psy2523          81 FLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKEN  160 (691)
Q Consensus        81 ~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~~i~~llde~~~g~~~~~~~~~~~~~~~~~~ke~  160 (691)
                      ||.++..++.+|||                     +++|+.|++||.+||||||                          
T Consensus        80 Fl~kl~avm~aYfg---------------------k~~Eeaiknnf~lI~ElLD--------------------------  112 (446)
T KOG0938|consen   80 FLYKLDAVMNAYFG---------------------KDREEAIKNNFVLIYELLD--------------------------  112 (446)
T ss_pred             HHHHHHHHHHHHhc---------------------ccchhhhhhceEeHHHHHH--------------------------
Confidence            99999999999999                     8999999999999999999                          


Q ss_pred             cccccCCCCCCCccccccCCccCCCCchhhhhhhcccCcccccc------ccccccc----cccccccccccCCcccccc
Q psy2523         161 TYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVKSQSK------EEQSQIT----SQVTGQIGWRREGIKYRRN  230 (691)
Q Consensus       161 ~~~~~~~~~~~~~~E~~d~G~p~~~~~~~Lk~~i~~~~~~~~~~------~~~~~~~----~~~~~~~~WR~~~i~y~kN  230 (691)
                                    ||+||||||+++++.|+.+|+.+++++.+.      +..++.+    ++.+++++||++|++|++|
T Consensus       113 --------------emld~G~pqnte~~al~~~is~~~Vrs~g~~ls~k~s~~sq~~~~~ssqv~G~i~WRr~Gi~ykkn  178 (446)
T KOG0938|consen  113 --------------EMLDFGIPQNTEPNALKAQISQKGVRSMGGVLSSKSSPTSQATELRSSQVTGKIGWRREGIKYKKN  178 (446)
T ss_pred             --------------HHHhcCCCccCChhHHHhhhhhhhhhccccccCCcCCCCcccccccccccccccccccccceeccc
Confidence                          999999999999999999999888776521      1122333    5677899999999999999


Q ss_pred             eEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEecCCCCeEEEEecccchhhcc-CCCCCCCCCccccCCCCCCCCCCCe
Q psy2523         231 ELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAK-GGSSAKSSGLTVAGGDDVGRSGKPV  309 (691)
Q Consensus       231 EI~vDVvE~v~~i~~~~G~i~~~~V~G~I~~ks~LsG~P~~~l~Lnd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  309 (691)
                      |||+||+|++|.+++++|++++++|+|.|.|+|+|||||+|++||||++.++.. ..+..++     .+.+..+.++...
T Consensus       179 evfldvvErvNlLmS~~GnVLrs~VsG~V~mk~~LSGmPeckfGlNDkl~~e~kq~esks~~-----~n~~~~sks~~g~  253 (446)
T KOG0938|consen  179 EVFLDVVERVNLLMSSDGNVLRSDVSGTVDMKTHLSGMPECKFGLNDKLGMESKQSESKSDF-----GNKNFPSKSGKGS  253 (446)
T ss_pred             eeEeEehheeeeEEcCCCCEEEeecccEEEEEEeccCCcccccccCcccceeeccccccccc-----cccCCCcccCCce
Confidence            999999999999999999999999999999999999999999999999887733 2211110     1112223445566


Q ss_pred             eeeccccccccccccCcCccceEEEecCCCceEEEEEEecCCCCCCeEEEEEEEecCCeEEEEEEEEeeccCcccccceE
Q psy2523         310 VVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKI  389 (691)
Q Consensus       310 i~ldd~~FH~cV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~~~~lPf~i~p~~~~~~~~~vei~l~l~~~~~~~~~~~~V  389 (691)
                      +.||||+||+||++++|++++.|+|+||||+|+||+||++.++.+||++.|.+++.+.+++||++.+++.|++++.+.+|
T Consensus       254 v~leDc~FHqCV~L~kFn~eh~IsFvPPDGe~ELMkYr~~enInlPFrV~PiV~el~r~kie~ri~iks~f~~kl~a~~v  333 (446)
T KOG0938|consen  254 VLLEDCTFHQCVRLDKFNSEHIISFVPPDGEFELMKYRVTENINLPFRVTPIVTELGRTKIEYRITIKSLFPPKLLAKDV  333 (446)
T ss_pred             EEeeccchheeeccccccccceEEEeCCCCceEeEeeeeccCcccceEeeeheecccceeEEEEEEEeccCCchhhhcce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCcceEEEEeeeeEEEEccCCEEEEEEeEecCCceeEEEEEEEEeecC-CCCCCCCCCeEEEEEee-ccCCC
Q psy2523         390 EVRIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETD-TKKKWTRPPISMNFEVP-FAPSG  467 (691)
Q Consensus       390 ~I~iPlP~~~~~~~~~~s~G~~~y~~~~~~l~W~I~kl~g~~e~~l~~~~~l~~~~-~~~~~~~~pi~v~F~ip-~t~SG  467 (691)
                      .++||+|+++..+++.++.|+|+|.|++++++|+|++++|.+|.+++|++++.++. ..+.|.+|||+++|++| ||.||
T Consensus       334 ~~rIPvP~ntv~~n~~v~~Gkaky~psen~ivWki~kf~G~tE~tlsAevels~Tt~nkq~WtrPPIsleFeV~MFt~SG  413 (446)
T KOG0938|consen  334 VVRIPVPPNTVKCNISVSNGKAKYVPSENAIVWKINKFNGLTESTLSAEVELSDTTQNKQQWTRPPISLEFEVPMFTNSG  413 (446)
T ss_pred             EEEecCCCccccceeEEecCccccCcccceEEEEecccCCcccceeEEEEEeccCccccccccCCCceeEEeeeeecCCc
Confidence            99999999999999999999999999999999999999999999999999998765 45679999999999999 99999


Q ss_pred             cEEEEEEeeccCCCCCCCceeEEEEEEecCCceeEE
Q psy2523         468 FKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR  503 (691)
Q Consensus       468 l~V~~L~V~e~~~~~~~~~~~KwVRYiT~Sg~Y~~r  503 (691)
                      |.||||+|.|+   .+.|+..|||||+|+||+|++|
T Consensus       414 L~VrylkV~e~---~Sk~~~vkWVrYitkaGsyEiR  446 (446)
T KOG0938|consen  414 LVVRYLKVSEK---DSKHRAVKWVRYITKAGSYEIR  446 (446)
T ss_pred             eEEEEEEEecc---cCCCceEEEEEEecccceeeeC
Confidence            99999999884   3789999999999999999987

>KOG0937|consensus Back     alignment and domain information
>KOG2740|consensus Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0938|consensus Back     alignment and domain information
>KOG2635|consensus Back     alignment and domain information
>KOG0937|consensus Back     alignment and domain information
>KOG2740|consensus Back     alignment and domain information
>KOG2677|consensus Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2677|consensus Back     alignment and domain information
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0934|consensus Back     alignment and domain information
>KOG0935|consensus Back     alignment and domain information
>KOG0936|consensus Back     alignment and domain information
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans Back     alignment and domain information
>KOG3343|consensus Back     alignment and domain information
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain Back     alignment and domain information
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2635|consensus Back     alignment and domain information
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query691
2bp5_M435 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 0.0
2bp5_M 435 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 4e-72
2xa7_M446 Ap2 Clathrin Adaptor Core In Active Complex With Ca 0.0
2xa7_M 446 Ap2 Clathrin Adaptor Core In Active Complex With Ca 1e-69
1bw8_A321 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-154
1bw8_A 321 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-66
1i31_A314 Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, 1e-154
1i31_A 314 Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, 1e-66
1bxx_A285 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-138
1bxx_A 285 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-50
2pr9_A299 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-138
2pr9_A 299 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-50
1h6e_A288 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-134
1h6e_A 288 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 3e-46
3ml6_A385 A Complex Between Dishevlled2 And Clathrin Adaptor 1e-130
3ml6_A 385 A Complex Between Dishevlled2 And Clathrin Adaptor 3e-42
1w63_M423 Ap1 Clathrin Adaptor Core Length = 423 1e-80
1w63_M 423 Ap1 Clathrin Adaptor Core Length = 423 6e-41
4en2_M266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 2e-56
4en2_M 266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 3e-31
4emz_A266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 9e-54
4emz_A 266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 6e-29
3l81_A301 Crystal Structure Of Adaptor Protein Complex 4 (Ap- 3e-23
3l81_A 301 Crystal Structure Of Adaptor Protein Complex 4 (Ap- 5e-09
4ikn_A261 Crystal Structure Of Adaptor Protein Complex 3 (ap- 8e-21
4ikn_A 261 Crystal Structure Of Adaptor Protein Complex 3 (ap- 2e-13
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435 Back     alignment and structure 
Iteration: 1

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/505 (74%), Positives = 400/505 (79%), Gaps = 73/505 (14%)
Query: 1   MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 60
           MIGGLF+YNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFH+KR
Sbjct: 1   MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60
Query: 61  ANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEE 120
           +NIWLAAVTKQNVNAAMVFEFL K  DVM +YF                     GKISEE
Sbjct: 61  SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYF---------------------GKISEE 99
Query: 121 NIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKENTYKXXXXXXXXXXXEILDFG 180
           NIKNNFVLIYELLD                                        EILDFG
Sbjct: 100 NIKNNFVLIYELLD----------------------------------------EILDFG 119
Query: 181 YPQNSDTGVLKTFILQQGVKSQ--SKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE 238
           YPQNS+TG LKTFI QQG+KSQ  +KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE
Sbjct: 120 YPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE 179
Query: 239 YVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEXXXXXXXXXXXLTVAG 298
            VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E                
Sbjct: 180 SVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGK----------GT 229
Query: 299 GDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRV 358
            D+  +SGK  + IDDC FHQCV+LSKF++E SISFIPPDGEFELMRYRTTKDI LPFRV
Sbjct: 230 ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV 289
Query: 359 IPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASEN 418
           IPLVRE  RTK+EVKVV+KS FK SLL QKIEVRIPTPLNTSGVQ+IC+KGKAKYKASEN
Sbjct: 290 IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASEN 349
Query: 419 AIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEP 478
           AIVWKIKRMAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KVRYLKVFEP
Sbjct: 350 AIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEP 409
Query: 479 KLNYSDHDVIKWVRYIGRSGLYETR 503
           KLNYSDHDVIKWVRYIGRSG+YETR
Sbjct: 410 KLNYSDHDVIKWVRYIGRSGIYETR 434
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435 Back     alignment and structure
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446 Back     alignment and structure
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446 Back     alignment and structure
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Egfr Internalization Peptide Fyralm Length = 321 Back     alignment and structure
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Egfr Internalization Peptide Fyralm Length = 321 Back     alignment and structure
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, Complexed With Egfr Internalization Peptide Fyralm At 2.5 A Resolution Length = 314 Back     alignment and structure
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, Complexed With Egfr Internalization Peptide Fyralm At 2.5 A Resolution Length = 314 Back     alignment and structure
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Tgn38 Internalization Peptide Dyqrln Length = 285 Back     alignment and structure
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Tgn38 Internalization Peptide Dyqrln Length = 285 Back     alignment and structure
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Gabaa Receptor-Gamma2 Subunit-Derived Internalization Peptide Deeygyecl Length = 299 Back     alignment and structure
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Gabaa Receptor-Gamma2 Subunit-Derived Internalization Peptide Deeygyecl Length = 299 Back     alignment and structure
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt Length = 288 Back     alignment and structure
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt Length = 288 Back     alignment and structure
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2 Length = 385 Back     alignment and structure
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2 Length = 385 Back     alignment and structure
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core Length = 423 Back     alignment and structure
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core Length = 423 Back     alignment and structure
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4 Su Terminal Domain, In Complex With A Sorting Peptide From The Precursor Protein (App) Length = 301 Back     alignment and structure
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4 Su Terminal Domain, In Complex With A Sorting Peptide From The Precursor Protein (App) Length = 301 Back     alignment and structure
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a Subunit C- Terminal Domain, In Complex With A Sorting Peptide From Tgn38 Length = 261 Back     alignment and structure
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a Subunit C- Terminal Domain, In Complex With A Sorting Peptide From Tgn38 Length = 261 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query691
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 1e-124
2vgl_M 435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 4e-33
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 1e-103
1i31_A 314 Clathrin coat assembly protein AP50; beta-sandwich 1e-42
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 1e-100
1w63_M 423 Adaptor-related protein complex 1, MU 1 subunit; e 5e-27
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 3e-92
3ml6_A 385 Chimeric complex between protein dishevlled2 HOMO 6e-31
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 5e-76
4en2_M 266 AP-1 complex subunit MU-1; human immunodeficiency 1e-28
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 1e-74
3l81_A 301 AP-4 complex subunit MU-1; immunoglobulin-like bet 3e-30
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 3e-23
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 3e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 4e-09
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure
 Score =  375 bits (964), Expect = e-124
 Identities = 376/505 (74%), Positives = 401/505 (79%), Gaps = 73/505 (14%)

Query: 1   MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 60
           MIGGLF+YNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFH+KR
Sbjct: 1   MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKR 60

Query: 61  ANIWLAAVTKQNVNAAMVFEFLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEE 120
           +NIWLAAVTKQNVNAAMVFEFL K  DVM +YFGKISEENIKNN                
Sbjct: 61  SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNN---------------- 104

Query: 121 NIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKENTYKSFNPSSFPSPSEILDFG 180
                FVLIYELLD                                        EILDFG
Sbjct: 105 -----FVLIYELLD----------------------------------------EILDFG 119

Query: 181 YPQNSDTGVLKTFILQQGVKSQS--KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE 238
           YPQNS+TG LKTFI QQG+KSQ   KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE
Sbjct: 120 YPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE 179

Query: 239 YVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAG 298
            VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+NDKIV+E +G             
Sbjct: 180 SVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQG----------KGT 229

Query: 299 GDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRV 358
            D+  +SGK  + IDDC FHQCV+LSKF++E SISFIPPDGEFELMRYRTTKDI LPFRV
Sbjct: 230 ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV 289

Query: 359 IPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASEN 418
           IPLVRE  RTK+EVKVV+KS FK SLL QKIEVRIPTPLNTSGVQ+IC+KGKAKYKASEN
Sbjct: 290 IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASEN 349

Query: 419 AIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEP 478
           AIVWKIKRMAGMKE+Q+SAEIELL T+ KKKW RPPISMNFEVPFAPSG KVRYLKVFEP
Sbjct: 350 AIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEP 409

Query: 479 KLNYSDHDVIKWVRYIGRSGLYETR 503
           KLNYSDHDVIKWVRYIGRSG+YETR
Sbjct: 410 KLNYSDHDVIKWVRYIGRSGIYETR 434
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314 Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266 Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266 Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301 Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142 Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query691
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 100.0
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 100.0
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 100.0
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 100.0
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 100.0
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 100.0
2vgl_M 435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 100.0
1w63_M 423 Adaptor-related protein complex 1, MU 1 subunit; e 100.0
1i31_A 314 Clathrin coat assembly protein AP50; beta-sandwich 100.0
3ml6_A 385 Chimeric complex between protein dishevlled2 HOMO 99.97
4en2_M 266 AP-1 complex subunit MU-1; human immunodeficiency 99.96
3l81_A 301 AP-4 complex subunit MU-1; immunoglobulin-like bet 99.96
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 99.94
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 99.94
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 99.9
3g9h_A328 Suppressor of yeast profilin deletion; SYP1, MU, a 98.72
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 97.59
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 97.23
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 97.22
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
Probab=100.00  E-value=2.3e-91  Score=777.50  Aligned_cols=433  Identities=87%  Similarity=1.336  Sum_probs=371.1

Q ss_pred             CeEEEEEEeCCCCEEEEEcccCCcchhhHHHHHHhhccccCCCCCCeEEeCCEEEEEEeeCcEEEEEEEcCCcCHHHHHH
Q psy2523           1 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFE   80 (691)
Q Consensus         1 Mi~~i~I~~~~G~~li~r~y~~~~~~~~~~~f~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~lv~vt~~~~n~~~~~e   80 (691)
                      ||++|||+|++|++|++|+|+++..++.++.|...+...+...++|+++.++++|+|+++++|||+|+++.|.|+++++|
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le   80 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFE   80 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHH
T ss_pred             CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHH
Confidence            99999999999999999999998889999999888875544468999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccccccccccceeeeecccccCCCHHHHHhhHHHHHHHhcccccCccccccchhhhHHHhhhcccc
Q psy2523          81 FLLKFIDVMQSYFGKISEENIKNNFFIDVMQSYFGKISEENIKNNFVLIYELLDDRYLGMESERGRASYILKIVHDRKEN  160 (691)
Q Consensus        81 ~L~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~n~~~i~~llde~~~g~~~~~~~~~~~~~~~~~~ke~  160 (691)
                      |||+|+++|++|||                     .++|++|++||++||+|||                          
T Consensus        81 ~L~~~v~vl~~yf~---------------------~v~E~~I~~Nf~~vy~lLD--------------------------  113 (435)
T 2vgl_M           81 FLYKMCDVMAAYFG---------------------KISEENIKNNFVLIYELLD--------------------------  113 (435)
T ss_dssp             HHHHHHHHHHHHHS---------------------SCCHHHHHHTHHHHHHHHH--------------------------
T ss_pred             HHHHHHHHHHHHHh---------------------ccCHHHHHHhHHHHHHHHH--------------------------
Confidence            99999999999999                     8999999999999999999                          


Q ss_pred             cccccCCCCCCCccccccCCccCCCCchhhhhhhcccCccccc--cccccccccccccccccccCCcccccceEEEEEEE
Q psy2523         161 TYKSFNPSSFPSPSEILDFGYPQNSDTGVLKTFILQQGVKSQS--KEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE  238 (691)
Q Consensus       161 ~~~~~~~~~~~~~~E~~d~G~p~~~~~~~Lk~~i~~~~~~~~~--~~~~~~~~~~~~~~~~WR~~~i~y~kNEI~vDVvE  238 (691)
                                    ||+|+|+||+|+.+.|+.++..+++..+.  .+....+++++++++|||+.|++|++|||||||+|
T Consensus       114 --------------E~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~wr~~gi~~~~nei~vdV~E  179 (435)
T 2vgl_M          114 --------------EILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE  179 (435)
T ss_dssp             --------------HHEETTEECCCCHHHHGGGCCCCCCCCC-----------------CCSSCSCCCCSSCEEEEEEEE
T ss_pred             --------------HHhcCCEEEecCHHHHHHHhccccccccccccccccccccccccccccccccCCcCcceEEEEEEE
Confidence                          99999999999999999999888765421  11122345567788999999999999999999999


Q ss_pred             EEEEEEcCCCCEEEEEEEEEEEEEEecCCCCeEEEEecccchhhccCCCCCCCCCccccCCCCCCCCCCCeeeecccccc
Q psy2523         239 YVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFH  318 (691)
Q Consensus       239 ~v~~i~~~~G~i~~~~V~G~I~~ks~LsG~P~~~l~Lnd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ldd~~FH  318 (691)
                      +|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||+++.+++.+.+.          .+..+.....++.|+||+||
T Consensus       180 ~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~----------~~~~~~~~~~~~~l~d~~fH  249 (435)
T 2vgl_M          180 SVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGT----------ADETSKSGKQSIAIDDCTFH  249 (435)
T ss_dssp             EEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC---------------------------CCCCCEEEEC
T ss_pred             EEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhcccccccc----------cccccccccCceEccccccc
Confidence            99999999999999999999999999999999999999987665432100          00000011246789999999


Q ss_pred             ccccccCcCccceEEEecCCCceEEEEEEecCCCCCCeEEEEEEEecCCeEEEEEEEEeeccCcccccceEEEEEcCCCC
Q psy2523         319 QCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPLN  398 (691)
Q Consensus       319 ~cV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~~~~lPf~i~p~~~~~~~~~vei~l~l~~~~~~~~~~~~V~I~iPlP~~  398 (691)
                      |||++++|+++|+|+|+||||+|+||+||++.+..+||.+.|++++.|++++||+++++++|+++..+++|.|+||+|++
T Consensus       250 ~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~~  329 (435)
T 2vgl_M          250 QCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLN  329 (435)
T ss_dssp             TTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTTTEEEEEEEEEECSCTTSEEEEEEEEEECCSS
T ss_pred             eeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCCCEEEEEEEEeCCCCCCceeeEEEEEEECCCC
Confidence            99999999999999999999999999999998888999999999877778999999999999988889999999999999


Q ss_pred             CcceEEEEeeeeEEEEccCCEEEEEEeEecCCceeEEEEEEEEeecCCCCCCCCCCeEEEEEeeccCCCcEEEEEEeecc
Q psy2523         399 TSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMNFEVPFAPSGFKVRYLKVFEP  478 (691)
Q Consensus       399 ~~~~~~~~s~G~~~y~~~~~~l~W~I~kl~g~~e~~l~~~~~l~~~~~~~~~~~~pi~v~F~ip~t~SGl~V~~L~V~e~  478 (691)
                      +..++++++.|+++|++++++++|+|++++|+++++++|++++.+....+.+.++||+|+|++|+++|||+|++|+|.++
T Consensus       330 ~~~~~~~~~~G~~~y~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~~t~Sgl~V~~l~v~~~  409 (435)
T 2vgl_M          330 TSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEP  409 (435)
T ss_dssp             CCCEEEEESSSEEEEETTTTEEEEEEEEEETTCEEEEEEEEECCCCSCSCCCCCCCEEEEEEESSCTTCCCEEEEEEECS
T ss_pred             CCCceEEecceeEEEccCCCEEEEEeccCCCCCCEEEEEEEEecCCCcCcccCCCcEEEEEEEEecccccEEEEEEEecc
Confidence            99999999999999999999999999999999999999999997643345577999999999999999999999999875


Q ss_pred             CCCCCCCceeEEEEEEecCCceeEEe
Q psy2523         479 KLNYSDHDVIKWVRYIGRSGLYETRK  504 (691)
Q Consensus       479 ~~~~~~~~~~KwVRYiT~Sg~Y~~r~  504 (691)
                      +...++|+|+|||||+|+||+|++|+
T Consensus       410 ~~~~~~y~~~kwVrY~t~sg~y~~R~  435 (435)
T 2vgl_M          410 KLNYSDHDVIKWVRYIGRSGIYETRC  435 (435)
T ss_dssp             SSSCBGGGSEEEEEEEEEEEEEEECC
T ss_pred             ccccCCCCCcCceEEEEeCCeEEEcC
Confidence            33234799999999999999999995
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 691
d2pr9a1277 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s 1e-104
d2pr9a1 277 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s 3e-39
d2vglm2141 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass 3e-36
d2vglm2141 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass 4e-04
d2vgls_142 d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem 1e-19
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  317 bits (814), Expect = e-104
 Identities = 233/286 (81%), Positives = 252/286 (88%), Gaps = 10/286 (3%)

Query: 218 IGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGIND 277
           IGWRREGIKYRRNELFLDVLE VNLLMSPQGQ LSAHV+G+VVMKSYLSGMPECKFG+ND
Sbjct: 1   IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60

Query: 278 KIVMEAKGGSSAKSSGLTVAGGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPP 337
           KIV+E +G              D+  +SGK  + IDDC FHQCV+LSKF++E SISFIPP
Sbjct: 61  KIVIEKQG----------KGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPP 110

Query: 338 DGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLKSQFKASLLGQKIEVRIPTPL 397
           DGEFELMRYRTTKDI LPFRVIPLVRE  RTK+EVKVV+KS FK SLL QKIEVRIPTPL
Sbjct: 111 DGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPL 170

Query: 398 NTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISM 457
           NTSGVQ+IC+KGKAKYKASENAIVWKIKRMAGMKE+Q+SAEIELL T+ KKKW RPPISM
Sbjct: 171 NTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISM 230

Query: 458 NFEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 503
           NFEVPFAPSG KVRYLKVFEPKLNYSDHDVIKWVRYIGRSG+YETR
Sbjct: 231 NFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 276
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query691
d2pr9a1277 Second domain of Mu2 adaptin subunit (ap50) of ap2 100.0
d2pr9a1 277 Second domain of Mu2 adaptin subunit (ap50) of ap2 99.97
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 99.96
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 99.9
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 98.21
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 96.36
d3cpta1116 MEK binding partner 1, MP1 {Human (Homo sapiens) [ 91.79
d2fh5a1129 Signal recognition particle receptor alpha subunit 82.27
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.5e-64  Score=526.42  Aligned_cols=277  Identities=84%  Similarity=1.342  Sum_probs=240.9

Q ss_pred             cccccCCcccccceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEecCCCCeEEEEecccchhhccCCCCCCCCCcccc
Q psy2523         218 IGWRREGIKYRRNELFLDVLEYVNLLMSPQGQTLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGGSSAKSSGLTVA  297 (691)
Q Consensus       218 ~~WR~~~i~y~kNEI~vDVvE~v~~i~~~~G~i~~~~V~G~I~~ks~LsG~P~~~l~Lnd~~~~~~~~~~~~~~~~~~~~  297 (691)
                      +|||++|++|++|||||||+|+++|+++++|.+++++|.|+|.|+|+|+|+|+|+|+||++..++.....          
T Consensus         1 i~WR~~~i~y~~NEi~vDV~E~i~~~~~~~G~~~~~~V~G~I~~~s~LsG~P~~~l~Ln~~~~~~~~~~~----------   70 (277)
T d2pr9a1           1 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKG----------   70 (277)
T ss_dssp             CTTSCSCCCCSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSSCEEEEEESBC-------------------
T ss_pred             CCccCCCCcccCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEecCCCCeEEEEecchhhccccccc----------
Confidence            6899999999999999999999999999999999999999999999999999999999998766554221          


Q ss_pred             CCCCCCCCCCCeeeeccccccccccccCcCccceEEEecCCCceEEEEEEecCCCCCCeEEEEEEEecCCeEEEEEEEEe
Q psy2523         298 GGDDVGRSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDIALPFRVIPLVREATRTKMEVKVVLK  377 (691)
Q Consensus       298 ~~~~~~~~~~~~i~ldd~~FH~cV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~~~~lPf~i~p~~~~~~~~~vei~l~l~  377 (691)
                      +.+..+.....++.|+||+||+||+++.|+++|+|+|+||||+|+||+||++.+..+||.+.+++...++++++++++++
T Consensus        71 ~~~~~~~~~~~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Y~~~~~~~~P~~i~~~~~~~~~~~~~~~i~l~  150 (277)
T d2pr9a1          71 TADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIK  150 (277)
T ss_dssp             ---------CCCBCCSEEEECTTSBCC-----CCEEECCCSEEEEEEEEEECSSCCCCEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ccccccccccCceEccceeeeeccccccccccceEeecCCCCcEEEEEEEcCCCcCCCcEEEEEEEeccCcEEEEEEEEE
Confidence            11122234456789999999999999999999999999999999999999998889999999999877778999999999


Q ss_pred             eccCcccccceEEEEEcCCCCCcceEEEEeeeeEEEEccCCEEEEEEeEecCCceeEEEEEEEEeecCCCCCCCCCCeEE
Q psy2523         378 SQFKASLLGQKIEVRIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISM  457 (691)
Q Consensus       378 ~~~~~~~~~~~V~I~iPlP~~~~~~~~~~s~G~~~y~~~~~~l~W~I~kl~g~~e~~l~~~~~l~~~~~~~~~~~~pi~v  457 (691)
                      ++++.+..+++|.|+||+|.++..+++.++.|+++|++++++++|+|++++++++++|+|++++.+......+.++||+|
T Consensus       151 ~~~~~~~~~~~v~I~iP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~k~~~~~~~~l~~~~~~~~~~~~~~~~~~pi~v  230 (277)
T d2pr9a1         151 SNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISM  230 (277)
T ss_dssp             ECSCTTCEEEEEEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEEETTCEEEEEEEEEECCCCSSSCCCCCCEEE
T ss_pred             eccCCCeeeeEEEEEeeCCCcccCceEEecCceEEEeccCCEEEEecccccCCccceEEEEEEeccCCCCccccCCcEEE
Confidence            99998889999999999999999999999999999999999999999999999999999999997766556667899999


Q ss_pred             EEEeeccCCCcEEEEEEeeccCCCCCCCceeEEEEEEecCCceeEEe
Q psy2523         458 NFEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRK  504 (691)
Q Consensus       458 ~F~ip~t~SGl~V~~L~V~e~~~~~~~~~~~KwVRYiT~Sg~Y~~r~  504 (691)
                      +|++|+++|||+|++|+|.+...+.++|+|+|||||+|+||+|++|.
T Consensus       231 ~F~ip~t~Sgl~V~~l~v~~~~~~~~~~~~~k~vrY~t~sg~Y~~R~  277 (277)
T d2pr9a1         231 NFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  277 (277)
T ss_dssp             EEEESSCTTCCCEEEEEEECSSSSCCGGGSEEEEEEEEEEEEEEECC
T ss_pred             EEEecccccceEEEEEEEeccccCCCCCCCCCCEEEEEECCCEEECC
Confidence            99999999999999999988766667899999999999999999994
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure