Psyllid ID: psy2580

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-----
Protein Sequence
MSNSSSPTPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTKLYLLEICYDM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccEEEEEccEEEEcHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccEEEEcccEEEcccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
msnsssptptppaplafnhkitgipcvaaasrytapvhidvgGTIYTSSLETLTKLYLLEICYDM
Flexible Loop (DISEMBL)
msnsssptptppapLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTKLYLLEICYDM
Low Complexity Region (SEG)
MsnsssptptppAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTKLYLLEICYDM
Disordered region (IsUnstruct)
**************LAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTKLYLLEICY**
Disordered Region (DISOPRED)
***********************IPCVAAASRYTAPVHIDVGGTIYTSSLETLTKLYLLEICYDM
Disordered Region (DISEMBL)
***********PAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTKLYLLEICYDM
Disordered Region (DISPRO)
*************PLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTKLYLLEICYDM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSNSSSPTPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTKLYLLEICYDM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	65	2.2.26 [Sep-21-2011]
Q6P3P4	255	BTB/POZ domain-containing	yes	N/A	0.707	0.180	0.56	3e-06
Q6DC02	257	BTB/POZ domain-containing	yes	N/A	0.707	0.178	0.56	3e-06
Q8K0E1	283	BTB/POZ domain-containing	yes	N/A	0.707	0.162	0.56	4e-06
Q5XJ34	257	BTB/POZ domain-containing	no	N/A	0.707	0.178	0.56	4e-06
Q96SI1	283	BTB/POZ domain-containing	yes	N/A	0.707	0.162	0.56	6e-06
Q0VD00	283	BTB/POZ domain-containing	yes	N/A	0.707	0.162	0.56	6e-06
Q6DCX3	255	BTB/POZ domain-containing	N/A	N/A	0.707	0.180	0.54	6e-06
Q2HJ48	257	BTB/POZ domain-containing	no	N/A	0.676	0.171	0.562	8e-06
Q5M956	257	BTB/POZ domain-containing	no	N/A	0.676	0.171	0.562	9e-06
Q719H9	257	BTB/POZ domain-containing	no	N/A	0.676	0.171	0.562	9e-06

>sp|Q6P3P4|KCD15_XENTR BTB/POZ domain-containing protein kctd15 OS=Xenopus tropicalis GN=kctd15 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 4/50 (8%)

Query: 6  SPTPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
          S T +P +PLA      GIP  A  ++  APVHIDVGG +YTSSL TLTK
Sbjct: 5  SLTRSPVSPLA----AQGIPLPAQLTKSNAPVHIDVGGHMYTSSLATLTK 50

Xenopus tropicalis (taxid: 8364)

>sp|Q6DC02|KCD15_DANRE BTB/POZ domain-containing protein kctd15 OS=Danio rerio GN=kctd15 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 4/50 (8%)

Query: 6  SPTPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
          S T +P +PLA      GIP  A  ++  APVHIDVGG +YTSSL TLTK
Sbjct: 5  SLTRSPVSPLA----AQGIPLPAQLTKANAPVHIDVGGHMYTSSLATLTK 50

Danio rerio (taxid: 7955)

>sp|Q8K0E1|KCD15_MOUSE BTB/POZ domain-containing protein KCTD15 OS=Mus musculus GN=Kctd15 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 4/50 (8%)

Query: 6  SPTPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
          S T +P +PLA      GIP  A  ++  APVHIDVGG +YTSSL TLTK
Sbjct: 31 SLTRSPVSPLA----AQGIPLPAQLTKANAPVHIDVGGHMYTSSLATLTK 76

Mus musculus (taxid: 10090)

>sp|Q5XJ34|KC15L_DANRE BTB/POZ domain-containing protein kctd15-like OS=Danio rerio GN=kctd15l PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 4/50 (8%)

Query: 6  SPTPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
          S T +P +PLA      GIP  A  ++  APVHIDVGG +YTSSL TLTK
Sbjct: 5  SLTRSPVSPLA----AQGIPLPAQLTKSNAPVHIDVGGHMYTSSLATLTK 50

Danio rerio (taxid: 7955)

>sp|Q96SI1|KCD15_HUMAN BTB/POZ domain-containing protein KCTD15 OS=Homo sapiens GN=KCTD15 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 4/50 (8%)

Query: 6  SPTPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
          S T +P +PLA      GIP  A  ++  APVHIDVGG +YTSSL TLTK
Sbjct: 31 SLTRSPVSPLA----AQGIPLPAQLTKSNAPVHIDVGGHMYTSSLATLTK 76

Homo sapiens (taxid: 9606)

>sp|Q0VD00|KCD15_BOVIN BTB/POZ domain-containing protein KCTD15 OS=Bos taurus GN=KCTD15 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 4/50 (8%)

Query: 6  SPTPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
          S T +P +PLA      GIP  A  ++  APVHIDVGG +YTSSL TLTK
Sbjct: 31 SLTRSPVSPLA----AQGIPLPAQLTKSNAPVHIDVGGHMYTSSLATLTK 76

Bos taurus (taxid: 9913)

>sp|Q6DCX3|KCD15_XENLA BTB/POZ domain-containing protein kctd15 OS=Xenopus laevis GN=kctd15 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 33/50 (66%), Gaps = 4/50 (8%)

Query: 6  SPTPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
          S T +P +PLA      GIP  A  ++  APVH+DVGG +YTSSL TLTK
Sbjct: 5  SLTRSPVSPLA----AQGIPLPAQLTKSNAPVHLDVGGHMYTSSLATLTK 50

Xenopus laevis (taxid: 8355)

>sp|Q2HJ48|KCTD1_BOVIN BTB/POZ domain-containing protein KCTD1 OS=Bos taurus GN=KCTD1 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 34/48 (70%), Gaps = 4/48 (8%)

Query: 8  TPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
          T +P +PL  N++  GIP  A  ++  APVHIDVGG +YTSSL TLTK
Sbjct: 7  TRSPASPL--NNQ--GIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTK 50

May repress the transcriptional activity of AP-2 family members, including TFAP2A, TFAP2B and TFAP2C to various extent.

Bos taurus (taxid: 9913)

>sp|Q5M956|KCTD1_MOUSE BTB/POZ domain-containing protein KCTD1 OS=Mus musculus GN=Kctd1 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 34/48 (70%), Gaps = 4/48 (8%)

Query: 8  TPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
          T +P +PL  N++  GIP  A  ++  APVHIDVGG +YTSSL TLTK
Sbjct: 7  TRSPASPL--NNQ--GIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTK 50

May repress the transcriptional activity of AP-2 family members, including TFAP2A, TFAP2B and TFAP2C to various extent.

Mus musculus (taxid: 10090)

>sp|Q719H9|KCTD1_HUMAN BTB/POZ domain-containing protein KCTD1 OS=Homo sapiens GN=KCTD1 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 34/48 (70%), Gaps = 4/48 (8%)

Query: 8  TPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
          T +P +PL  N++  GIP  A  ++  APVHIDVGG +YTSSL TLTK
Sbjct: 7  TRSPASPL--NNQ--GIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTK 50

May repress the transcriptional activity of AP-2 family members, including TFAP2A, TFAP2B and TFAP2C to various extent.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
328785843	368	PREDICTED: BTB/POZ domain-containing pro	0.846	0.149	0.854	7e-20
345496611	346	PREDICTED: BTB/POZ domain-containing pro	0.846	0.158	0.872	1e-19
380018417	341	PREDICTED: BTB/POZ domain-containing pro	0.846	0.161	0.854	1e-19
270001440	488	hypothetical protein TcasGA2_TC000269 [T	0.784	0.104	0.836	3e-17
189234890	457	PREDICTED: similar to CG10440 CG10440-PA	0.784	0.111	0.836	1e-15
24657109	338	CG10440, isoform A [Drosophila melanogas	0.846	0.162	0.604	1e-14
386768396	367	CG10440, isoform B [Drosophila melanogas	0.846	0.149	0.604	2e-14
193594129	302	PREDICTED: BTB/POZ domain-containing pro	0.815	0.175	0.781	2e-14
383853796	367	PREDICTED: BTB/POZ domain-containing pro	0.846	0.149	0.872	4e-14
332026454	118	BTB/POZ domain-containing protein KCTD1	0.846	0.466	0.854	4e-14

>gi|328785843|ref|XP_394688.4| PREDICTED: BTB/POZ domain-containing protein KCTD15-like [Apis mellifera]

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/55 (85%), Positives = 50/55 (90%)

Query: 1   MSNSSSPTPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
           MSNSSSPTP  PA  ++N K+TGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK
Sbjct: 77  MSNSSSPTPPTPAAASYNQKMTGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 131

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496611|ref|XP_001603605.2| PREDICTED: BTB/POZ domain-containing protein KCTD15-like [Nasonia vitripennis]

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/55 (87%), Positives = 50/55 (90%)

Query: 1   MSNSSSPTPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
           MSNSSSPTP  PA  A+N K+TGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK
Sbjct: 49  MSNSSSPTPPTPAASAYNQKMTGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 103

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018417|ref|XP_003693125.1| PREDICTED: BTB/POZ domain-containing protein KCTD15-like [Apis florea]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/55 (85%), Positives = 50/55 (90%)

Query: 1  MSNSSSPTPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
          MSNSSSPTP  PA  ++N K+TGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK
Sbjct: 24 MSNSSSPTPPTPAAASYNQKMTGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 78

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001440|gb|EEZ97887.1| hypothetical protein TcasGA2_TC000269 [Tribolium castaneum]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/55 (83%), Positives = 47/55 (85%), Gaps = 4/55 (7%)

Query: 1   MSNSSSPTPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
           MSNSSSPTP    P    +KITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK
Sbjct: 214 MSNSSSPTP----PAVNYNKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 264

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234890|ref|XP_966447.2| PREDICTED: similar to CG10440 CG10440-PA [Tribolium castaneum]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/55 (83%), Positives = 47/55 (85%), Gaps = 4/55 (7%)

Query: 1   MSNSSSPTPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
           MSNSSSPTP    P    +KITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK
Sbjct: 211 MSNSSSPTP----PAVNYNKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 261

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24657109|ref|NP_611588.1| CG10440, isoform A [Drosophila melanogaster] gi|194881938|ref|XP_001975070.1| GG20766 [Drosophila erecta] gi|195346467|ref|XP_002039779.1| GM15711 [Drosophila sechellia] gi|195486450|ref|XP_002091516.1| GE13699 [Drosophila yakuba] gi|195585466|ref|XP_002082502.1| GD25187 [Drosophila simulans] gi|7291303|gb|AAF46733.1| CG10440, isoform A [Drosophila melanogaster] gi|21392068|gb|AAM48388.1| RE04768p [Drosophila melanogaster] gi|190658257|gb|EDV55470.1| GG20766 [Drosophila erecta] gi|194135128|gb|EDW56644.1| GM15711 [Drosophila sechellia] gi|194177617|gb|EDW91228.1| GE13699 [Drosophila yakuba] gi|194194511|gb|EDX08087.1| GD25187 [Drosophila simulans] gi|220947722|gb|ACL86404.1| CG10440-PA [synthetic construct]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 53/86 (61%), Gaps = 31/86 (36%)

Query: 1   MSNSSSPTPTPPA-----PLAF-------------------------NHK-ITGIPCVAA 29
           +SNSSSPTPTPPA     PL                           NHK ITGIPCVAA
Sbjct: 41  ISNSSSPTPTPPASSSVTPLGLPGAVAAAAAAVGGASSAGASSYLHGNHKPITGIPCVAA 100

Query: 30  ASRYTAPVHIDVGGTIYTSSLETLTK 55
           ASRYTAPVHIDVGGTIYTSSLETLTK
Sbjct: 101 ASRYTAPVHIDVGGTIYTSSLETLTK 126

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386768396|ref|NP_001246449.1| CG10440, isoform B [Drosophila melanogaster] gi|295393171|gb|ADG03446.1| MIP18912p [Drosophila melanogaster] gi|383302628|gb|AFH08202.1| CG10440, isoform B [Drosophila melanogaster]

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 53/86 (61%), Gaps = 31/86 (36%)

Query: 1   MSNSSSPTPTPPA-----PLAF-------------------------NHK-ITGIPCVAA 29
           +SNSSSPTPTPPA     PL                           NHK ITGIPCVAA
Sbjct: 70  ISNSSSPTPTPPASSSVTPLGLPGAVAAAAAAVGGASSAGASSYLHGNHKPITGIPCVAA 129

Query: 30  ASRYTAPVHIDVGGTIYTSSLETLTK 55
           ASRYTAPVHIDVGGTIYTSSLETLTK
Sbjct: 130 ASRYTAPVHIDVGGTIYTSSLETLTK 155

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193594129|ref|XP_001949840.1| PREDICTED: BTB/POZ domain-containing protein KCTD15-like isoform 1 [Acyrthosiphon pisum]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 48/55 (87%), Gaps = 2/55 (3%)

Query: 3  NSSSPTPTPPAPL-AFNHKI-TGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
          NS+SP+PTP  P   +NHKI  GIPCVAAAS+YTAPVHIDVGGTIYTSSL+TLTK
Sbjct: 33 NSNSPSPTPVVPTTGYNHKIIAGIPCVAAASKYTAPVHIDVGGTIYTSSLDTLTK 87

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853796|ref|XP_003702408.1| PREDICTED: BTB/POZ domain-containing protein KCTD15-like [Megachile rotundata]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/55 (87%), Positives = 50/55 (90%)

Query: 1   MSNSSSPTPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
           MSNSSSPTP  PA  A+N K+TGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK
Sbjct: 77  MSNSSSPTPPTPAAPAYNQKMTGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 131

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026454|gb|EGI66582.1| BTB/POZ domain-containing protein KCTD1 [Acromyrmex echinatior]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/55 (85%), Positives = 49/55 (89%)

Query: 1   MSNSSSPTPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
           MSNSSSPTP  PA   +N K+TGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK
Sbjct: 64  MSNSSSPTPPTPAAPTYNQKMTGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 118

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
FB|FBgn0034636	338	CG10440 [Drosophila melanogast	0.584	0.112	0.974	2.2e-14
UNIPROTKB|K7EM48	113	KCTD15 "BTB/POZ domain-contain	0.507	0.292	0.666	3.4e-06
UNIPROTKB|K7EN63	128	KCTD15 "BTB/POZ domain-contain	0.507	0.257	0.666	3.4e-06
UNIPROTKB|J3KSG1	208	KCTD1 "BTB/POZ domain-containi	0.507	0.158	0.666	6.3e-06
UNIPROTKB|Q2HJ48	257	KCTD1 "BTB/POZ domain-containi	0.507	0.128	0.666	1.1e-05
UNIPROTKB|Q719H9	257	KCTD1 "BTB/POZ domain-containi	0.507	0.128	0.666	1.1e-05
MGI|MGI:1918269	257	Kctd1 "potassium channel tetra	0.507	0.128	0.666	1.1e-05
RGD|621566	257	Kctd1 "potassium channel tetra	0.507	0.128	0.666	1.1e-05
UNIPROTKB|Q8R4G8	257	Kctd1 "BTB/POZ domain-containi	0.507	0.128	0.666	1.1e-05
ZFIN|ZDB-GENE-040801-34	257	kctd15b "potassium channel tet	0.507	0.128	0.666	1.1e-05

FB|FBgn0034636 CG10440 [Drosophila melanogaster (taxid:7227)]

 Score = 188 (71.2 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 38/39 (97%), Positives = 38/39 (97%)

Query:    18 NHK-ITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
             NHK ITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK
Sbjct:    88 NHKPITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 126

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|K7EM48 KCTD15 "BTB/POZ domain-containing protein KCTD15" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 22/33 (66%), Positives = 25/33 (75%)

Query:    23 GIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
             GIP  A  ++  APVHIDVGG +YTSSL TLTK
Sbjct:    44 GIPLPAQLTKSNAPVHIDVGGHMYTSSLATLTK 76

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|K7EN63 KCTD15 "BTB/POZ domain-containing protein KCTD15" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 22/33 (66%), Positives = 25/33 (75%)

Query:    23 GIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
             GIP  A  ++  APVHIDVGG +YTSSL TLTK
Sbjct:    44 GIPLPAQLTKSNAPVHIDVGGHMYTSSLATLTK 76

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|J3KSG1 KCTD1 "BTB/POZ domain-containing protein KCTD1" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 6.3e-06, P = 6.3e-06
 Identities = 22/33 (66%), Positives = 25/33 (75%)

Query:    23 GIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
             GIP  A  ++  APVHIDVGG +YTSSL TLTK
Sbjct:    18 GIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTK 50

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|Q2HJ48 KCTD1 "BTB/POZ domain-containing protein KCTD1" [Bos taurus (taxid:9913)]

 Score = 107 (42.7 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 22/33 (66%), Positives = 25/33 (75%)

Query:    23 GIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
             GIP  A  ++  APVHIDVGG +YTSSL TLTK
Sbjct:    18 GIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTK 50

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0008134 "transcription factor binding" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|Q719H9 KCTD1 "BTB/POZ domain-containing protein KCTD1" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 22/33 (66%), Positives = 25/33 (75%)

Query:    23 GIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
             GIP  A  ++  APVHIDVGG +YTSSL TLTK
Sbjct:    18 GIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTK 50

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0003714 "transcription corepressor activity" evidence=IDA

MGI|MGI:1918269 Kctd1 "potassium channel tetramerisation domain containing 1" [Mus musculus (taxid:10090)]

 Score = 107 (42.7 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 22/33 (66%), Positives = 25/33 (75%)

Query:    23 GIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
             GIP  A  ++  APVHIDVGG +YTSSL TLTK
Sbjct:    18 GIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTK 50

GO:0003714 "transcription corepressor activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008134 "transcription factor binding" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=IEA

RGD|621566 Kctd1 "potassium channel tetramerisation domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 107 (42.7 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 22/33 (66%), Positives = 25/33 (75%)

Query:    23 GIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
             GIP  A  ++  APVHIDVGG +YTSSL TLTK
Sbjct:    18 GIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTK 50

GO:0003714 "transcription corepressor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO;ISS

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|Q8R4G8 Kctd1 "BTB/POZ domain-containing protein KCTD1" [Rattus norvegicus (taxid:10116)]

 Score = 107 (42.7 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 22/33 (66%), Positives = 25/33 (75%)

Query:    23 GIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
             GIP  A  ++  APVHIDVGG +YTSSL TLTK
Sbjct:    18 GIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTK 50

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

ZFIN|ZDB-GENE-040801-34 kctd15b "potassium channel tetramerisation domain containing 15b" [Danio rerio (taxid:7955)]

 Score = 107 (42.7 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 22/33 (66%), Positives = 25/33 (75%)

Query:    23 GIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
             GIP  A  ++  APVHIDVGG +YTSSL TLTK
Sbjct:    18 GIPLPAQLTKANAPVHIDVGGHMYTSSLATLTK 50

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0044335 "canonical Wnt receptor signaling pathway involved in neural crest cell differentiation" evidence=IGI

GO:0060037 "pharyngeal system development" evidence=IGI

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0VD00	KCD15_BOVIN	No assigned EC number	0.56	0.7076	0.1625	yes	N/A
Q96SI1	KCD15_HUMAN	No assigned EC number	0.56	0.7076	0.1625	yes	N/A
Q6DC02	KCD15_DANRE	No assigned EC number	0.56	0.7076	0.1789	yes	N/A
Q8K0E1	KCD15_MOUSE	No assigned EC number	0.56	0.7076	0.1625	yes	N/A
Q6P3P4	KCD15_XENTR	No assigned EC number	0.56	0.7076	0.1803	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	65
KOG2723|consensus	221		98.95
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	98.57
KOG2716|consensus	230		97.33
KOG2714|consensus	465		95.82
KOG1665|consensus	302		95.31
KOG3713|consensus	477		93.41
KOG2715|consensus	210		86.43

>KOG2723|consensus

Probab=98.95  E-value=1.7e-10  Score=83.62  Aligned_cols=34  Identities=41%  Similarity=0.566  Sum_probs=31.1

Q ss_pred             cccccCCCcEEEeecceeEechhHHHhhccccce
Q psy2580          28 AAASRYTAPVHIDVGGTIYTSSLETLTKLYLLEI   61 (65)
Q Consensus        28 A~~~~~~apVhlnVGG~iYTTSLsTLtkyPds~l   61 (65)
                      +.+..++++|+|||||++|||+|+||++||||.|
T Consensus         2 ~~~~~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L   35 (221)
T KOG2723|consen    2 MLTSEYPDVVELNVGGAIYTTRLGTLTKFPDSML   35 (221)
T ss_pred             CcccccCCceeeccCCeEEEeeccceeechHHHH
Confidence            3456899999999999999999999999999976

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=98.57  E-value=4.3e-08  Score=58.23  Aligned_cols=26  Identities=38%  Similarity=0.537  Sum_probs=24.3

Q ss_pred             EEEeecceeEechhHHHhhcccccee
Q psy2580          37 VHIDVGGTIYTSSLETLTKLYLLEIC   62 (65)
Q Consensus        37 VhlnVGG~iYTTSLsTLtkyPds~l~   62 (65)
                      |+|||||++|.|+.+||+++|+|.++
T Consensus         1 V~lNVGG~~f~~~~~tL~~~~~s~l~   26 (94)
T PF02214_consen    1 VRLNVGGTIFETSRSTLTRYPDSLLA   26 (94)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTT
T ss_pred             CEEEECCEEEEEcHHHHhhCCCChhh
Confidence            78999999999999999999999764

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>KOG2716|consensus

Probab=97.33  E-value=0.00014  Score=53.23  Aligned_cols=24  Identities=46%  Similarity=0.760  Sum_probs=21.7

Q ss_pred             CCCcEEEeecceeEechhHHHhhc
Q psy2580          33 YTAPVHIDVGGTIYTSSLETLTKL   56 (65)
Q Consensus        33 ~~apVhlnVGG~iYTTSLsTLtky   56 (65)
                      +...|.|||||++|.||.+||||+
T Consensus         3 ~~~~vkLnvGG~~F~Tsk~TLtk~   26 (230)
T KOG2716|consen    3 MSETVKLNVGGTIFKTSKSTLTKF   26 (230)
T ss_pred             ccceEEEecCCeEEEeehhhhhhh
Confidence            456789999999999999999995

>KOG2714|consensus

Probab=95.82  E-value=0.0074  Score=48.83  Aligned_cols=29  Identities=31%  Similarity=0.339  Sum_probs=25.5

Q ss_pred             cCCCcEEEeecceeEechhHHHhhcc-ccc
Q psy2580          32 RYTAPVHIDVGGTIYTSSLETLTKLY-LLE   60 (65)
Q Consensus        32 ~~~apVhlnVGG~iYTTSLsTLtkyP-ds~   60 (65)
                      .....|+|||||.||.||-.||+-=| ||=
T Consensus         8 ~~~~~V~lNVGGriF~Ts~qTL~~~~~DSf   37 (465)
T KOG2714|consen    8 SSGDRVKLNVGGRIFETSAQTLTWIPRDSF   37 (465)
T ss_pred             CCCceEEEecCceEEecchhhhhcCCcchH
Confidence            34688999999999999999999888 763

>KOG1665|consensus

Probab=95.31  E-value=0.0065  Score=46.99  Aligned_cols=30  Identities=17%  Similarity=0.389  Sum_probs=25.9

Q ss_pred             cCCCcEEEeecceeEechhHHHh-hccccce
Q psy2580          32 RYTAPVHIDVGGTIYTSSLETLT-KLYLLEI   61 (65)
Q Consensus        32 ~~~apVhlnVGG~iYTTSLsTLt-kyPds~l   61 (65)
                      ..+.-|.||+||..|+|+++||+ |=|||-|
T Consensus         6 ~~~~~vrlnigGk~f~TTidTlv~rEPDSML   36 (302)
T KOG1665|consen    6 NLSSMVRLNIGGKKFCTTIDTLVIREPDSML   36 (302)
T ss_pred             ChhhhheeecCCeEEEEeehhhcccCchHHH
Confidence            34556999999999999999998 8899865

>KOG3713|consensus

Probab=93.41  E-value=0.053  Score=43.82  Aligned_cols=28  Identities=29%  Similarity=0.376  Sum_probs=25.3

Q ss_pred             CCcEEEeecceeEechhHHHhhccccce
Q psy2580          34 TAPVHIDVGGTIYTSSLETLTKLYLLEI   61 (65)
Q Consensus        34 ~apVhlnVGG~iYTTSLsTLtkyPds~l   61 (65)
                      ..-|.|||||+-|-+.-+||.|+|..+|
T Consensus        30 ~~~i~lNVGG~r~~l~~~tL~~~P~TRL   57 (477)
T KOG3713|consen   30 DRRVRLNVGGTRHELYWSTLKRFPLTRL   57 (477)
T ss_pred             CcEEEEeeCCeeEEehHHHHhhCchhHH
Confidence            3479999999999999999999998776

>KOG2715|consensus

Probab=86.43  E-value=0.32  Score=36.33  Aligned_cols=26  Identities=27%  Similarity=0.374  Sum_probs=23.2

Q ss_pred             CCcEEEeecceeEechhHHHhhcccc
Q psy2580          34 TAPVHIDVGGTIYTSSLETLTKLYLL   59 (65)
Q Consensus        34 ~apVhlnVGG~iYTTSLsTLtkyPds   59 (65)
                      +.-|.|||||+.|-|.-.||-|=|.|
T Consensus        20 s~wVRlNVGGt~f~TtktTl~rdp~s   45 (210)
T KOG2715|consen   20 SLWVRLNVGGTVFLTTKTTLPRDPKS   45 (210)
T ss_pred             eEEEEEecCCEEEEeeeeccccCcHH
Confidence            57899999999999999999988843

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	65
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	3e-05
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	6e-05
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	2e-04

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Length = 202

 Score = 38.4 bits (89), Expect = 3e-05
 Identities = 7/31 (22%), Positives = 15/31 (48%)

Query: 25 PCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
                   +  V ++VGGT + ++ +TL +
Sbjct: 2  ALAQRPGSVSKWVRLNVGGTYFLTTRQTLCR 32

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Length = 107

 Score = 36.5 bits (85), Expect = 6e-05
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 37 VHIDVGGTIYTSSLETLTK 55
          V ++VGGT + ++ +TL +
Sbjct: 8  VRLNVGGTYFLTTRQTLCR 26

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Length = 140

 Score = 36.0 bits (83), Expect = 2e-04
 Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 14/55 (25%)

Query: 1  MSNSSSPTPTPPAPLAFNHKITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTK 55
          M  ++ P P  PA                  R    + ++V G  + +   TL +
Sbjct: 15 MPVANCPMPLAPAD--------------KNKRQDELIVLNVSGRRFQTWRTTLER 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	65
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	98.92
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	98.91
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	98.9
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	98.88
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	98.88
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	98.83
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	98.64
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	98.59

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=98.92  E-value=4.8e-10  Score=72.17  Aligned_cols=32  Identities=16%  Similarity=0.152  Sum_probs=27.3

Q ss_pred             ccCCCcEEEeecceeEechhHHHhhcccccee
Q psy2580          31 SRYTAPVHIDVGGTIYTSSLETLTKLYLLEIC   62 (65)
Q Consensus        31 ~~~~apVhlnVGG~iYTTSLsTLtkyPds~l~   62 (65)
                      .+....|+|||||++|+|+++||+|||||.|.
T Consensus         9 ~~~~~~V~LNVGG~~F~t~~~TL~~~p~S~L~   40 (124)
T 1s1g_A            9 KRQDELIVLNVSGRRFQTWRTTLERYPDTLLG   40 (124)
T ss_dssp             ---CCEEEEEETTEEEEEEHHHHTTSTTSSTT
T ss_pred             CCCCCEEEEEeCCEEEEEeHHHHhcCCCceec
Confidence            35678999999999999999999999999873

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=98.91  E-value=1.1e-09  Score=72.02  Aligned_cols=33  Identities=15%  Similarity=0.144  Sum_probs=29.4

Q ss_pred             cccCCCcEEEeecceeEechhHHHhhcccccee
Q psy2580          30 ASRYTAPVHIDVGGTIYTSSLETLTKLYLLEIC   62 (65)
Q Consensus        30 ~~~~~apVhlnVGG~iYTTSLsTLtkyPds~l~   62 (65)
                      .......|+|||||++|+|+++||+|||||.|.
T Consensus        30 ~~~~~~~V~LNVGG~~F~T~~~TL~~~P~S~L~   62 (140)
T 2nz0_B           30 NKRQDELIVLNVSGRRFQTWRTTLERYPDTLLG   62 (140)
T ss_dssp             CTTCCCEEEEEETTEEEEEEHHHHHTCTTSTTT
T ss_pred             cCCCCCEEEEEECCEEEEeeHHHHhcCCCeeec
Confidence            345678999999999999999999999999873

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=98.90  E-value=6.4e-10  Score=70.65  Aligned_cols=30  Identities=27%  Similarity=0.257  Sum_probs=26.9

Q ss_pred             CCCcEEEeecceeEechhHHHhhcccccee
Q psy2580          33 YTAPVHIDVGGTIYTSSLETLTKLYLLEIC   62 (65)
Q Consensus        33 ~~apVhlnVGG~iYTTSLsTLtkyPds~l~   62 (65)
                      ....|+|||||++|+|+.+||+|||+|.|.
T Consensus         3 ~~~~V~LNVGG~~f~T~~~TL~~~P~s~L~   32 (115)
T 3kvt_A            3 AENRVIINVGGIRHETYKATLKKIPATRLS   32 (115)
T ss_dssp             -CCEEEEEETTEEEEEEHHHHTTSCSSTTT
T ss_pred             CCCEEEEEECCEEEEecHHHHhcCCCccHH
Confidence            357899999999999999999999999764

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=98.88  E-value=7.5e-10  Score=69.09  Aligned_cols=27  Identities=26%  Similarity=0.315  Sum_probs=25.2

Q ss_pred             cEEEeecceeEechhHHHhhcccccee
Q psy2580          36 PVHIDVGGTIYTSSLETLTKLYLLEIC   62 (65)
Q Consensus        36 pVhlnVGG~iYTTSLsTLtkyPds~l~   62 (65)
                      .|+|||||++|+|+.+||+|||||.|.
T Consensus         2 ~v~LNVGG~~f~t~~~TL~~~p~s~L~   28 (100)
T 1t1d_A            2 RVVINVSGLRFETQLKTLNQFPDTLLG   28 (100)
T ss_dssp             EEEEEETTEEEEEEHHHHHTSTTSTTT
T ss_pred             EEEEEECCEEEEeeHHHHhcCCCcccc
Confidence            689999999999999999999999763

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2

Probab=98.88  E-value=7.6e-10  Score=68.88  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=24.5

Q ss_pred             EEEeecceeEechhHHHhhcccccee
Q psy2580          37 VHIDVGGTIYTSSLETLTKLYLLEIC   62 (65)
Q Consensus        37 VhlnVGG~iYTTSLsTLtkyPds~l~   62 (65)
                      |+|||||++|+|+++||++||||.|.
T Consensus         2 V~LNVGG~~f~t~~~TL~~~p~s~L~   27 (105)
T 1nn7_A            2 IVLNVSGTRFQTWQDTLERYPDTLLG   27 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCSSSTT
T ss_pred             EEEEECCEEEEEeHHHHhcCCCcccc
Confidence            89999999999999999999999763

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=98.83  E-value=1.4e-09  Score=66.99  Aligned_cols=29  Identities=24%  Similarity=0.289  Sum_probs=26.1

Q ss_pred             CCCcEEEeecceeEechhHHHhhccccce
Q psy2580          33 YTAPVHIDVGGTIYTSSLETLTKLYLLEI   61 (65)
Q Consensus        33 ~~apVhlnVGG~iYTTSLsTLtkyPds~l   61 (65)
                      .+..|+|||||++|+|+.+||++||+|.|
T Consensus         4 ~~~~v~LNVGG~~f~t~~~TL~~~p~s~L   32 (107)
T 3drz_A            4 VSKWVRLNVGGTYFLTTRQTLCRDPKSFL   32 (107)
T ss_dssp             -CCEEEEEETTEEEEEEHHHHTSSTTSHH
T ss_pred             CCCEEEEEECCEEEEECHHHHhcCCCcch
Confidence            35789999999999999999999999865

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=98.64  E-value=1.1e-08  Score=76.54  Aligned_cols=43  Identities=16%  Similarity=0.139  Sum_probs=27.7

Q ss_pred             CCCCCCcccccccCCCcEEEeecceeEechhHHHhhcccccee
Q psy2580          20 KITGIPCVAAASRYTAPVHIDVGGTIYTSSLETLTKLYLLEIC   62 (65)
Q Consensus        20 ~~~giP~~A~~~~~~apVhlnVGG~iYTTSLsTLtkyPds~l~   62 (65)
                      ...|++.++........|.|||||+.|+|+.+||+||||+.|.
T Consensus        37 ~~~~~~~~~~~~~~~~~v~lNVgG~~f~t~~~tL~~~p~s~l~   79 (514)
T 2r9r_B           37 HPQDTYDPEADHESSERVVINISGLRFETQLKTLAQFPETLLG   79 (514)
T ss_dssp             --------------CCEEEEEETTEEEEEEHHHHTTSTTSTTT
T ss_pred             CccCCcCccccCCCCCEEEEEeCCEEEEecHHHHhcCCCCccc
Confidence            3457778888888999999999999999999999999999874

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=98.59  E-value=2.1e-08  Score=70.37  Aligned_cols=33  Identities=21%  Similarity=0.253  Sum_probs=29.5

Q ss_pred             ccccCCCcEEEeecceeEechhHHHhhccccce
Q psy2580          29 AASRYTAPVHIDVGGTIYTSSLETLTKLYLLEI   61 (65)
Q Consensus        29 ~~~~~~apVhlnVGG~iYTTSLsTLtkyPds~l   61 (65)
                      .+......|+|||||++|+|+.+||+|||||.|
T Consensus         6 ~~g~~~~~V~LNVGG~~F~Tt~sTL~r~PdS~L   38 (202)
T 3drx_A            6 RPGSVSKWVRLNVGGTYFLTTRQTLCRDPKSFL   38 (202)
T ss_dssp             CSSCCCCEEEEEETTEEEEEETTGGGSCTTSST
T ss_pred             CCCCCCCEEEEEECCEEEEEeHHHHhCCCcchH
Confidence            345678899999999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	65
d1t1da_	100	d.42.1.2 (A:) Shaker potassium channel {California	6e-04
d1nn7a_	105	d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus	0.002
d3kvta_	103	d.42.1.2 (A:) akv3.1 voltage-gated potassium chann	0.004

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 100

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

 Score = 32.9 bits (75), Expect = 6e-04
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 37 VHIDVGGTIYTSSLETLTK 55
          V I+V G  + + L+TL +
Sbjct: 3  VVINVSGLRFETQLKTLNQ 21

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 105

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 31.8 bits (72), Expect = 0.002
 Identities = 5/19 (26%), Positives = 12/19 (63%)

Query: 37 VHIDVGGTIYTSSLETLTK 55
          + ++V GT + +  +TL +
Sbjct: 2  IVLNVSGTRFQTWQDTLER 20

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 103

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

 Score = 30.6 bits (69), Expect = 0.004
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 37 VHIDVGGTIYTSSLETLTK 55
          V I+VGG  + +   TL K
Sbjct: 4  VIINVGGIRHETYKATLKK 22

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	65
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	98.85
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	98.7
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	98.67

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=98.85  E-value=5.4e-10  Score=68.10  Aligned_cols=27  Identities=26%  Similarity=0.340  Sum_probs=25.1

Q ss_pred             CcEEEeecceeEechhHHHhhccccce
Q psy2580          35 APVHIDVGGTIYTSSLETLTKLYLLEI   61 (65)
Q Consensus        35 apVhlnVGG~iYTTSLsTLtkyPds~l   61 (65)
                      +.|+|||||++|+|+++||++||+|.|
T Consensus         1 drI~LNVGG~~f~t~~~tL~~~p~s~l   27 (100)
T d1t1da_           1 ERVVINVSGLRFETQLKTLNQFPDTLL   27 (100)
T ss_dssp             CEEEEEETTEEEEEEHHHHHTSTTSTT
T ss_pred             CeEEEEECCEEEEEeHHHHhhCCCchh
Confidence            369999999999999999999999976

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=3.2e-09  Score=64.70  Aligned_cols=27  Identities=19%  Similarity=0.217  Sum_probs=24.9

Q ss_pred             cEEEeecceeEechhHHHhhcccccee
Q psy2580          36 PVHIDVGGTIYTSSLETLTKLYLLEIC   62 (65)
Q Consensus        36 pVhlnVGG~iYTTSLsTLtkyPds~l~   62 (65)
                      .|.|||||++|+|+.+||++||+|.|.
T Consensus         1 iI~LNVGG~~f~t~~~TL~~~p~s~l~   27 (105)
T d1nn7a_           1 LIVLNVSGTRFQTWQDTLERYPDTLLG   27 (105)
T ss_dssp             CEEEEETTEEEEECHHHHHTSCSSSTT
T ss_pred             CEEEEECCEEEEEeHHHHhcCCCCCcc
Confidence            489999999999999999999998764

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=98.67  E-value=4.2e-09  Score=63.83  Aligned_cols=28  Identities=29%  Similarity=0.303  Sum_probs=25.2

Q ss_pred             CcEEEeecceeEechhHHHhhcccccee
Q psy2580          35 APVHIDVGGTIYTSSLETLTKLYLLEIC   62 (65)
Q Consensus        35 apVhlnVGG~iYTTSLsTLtkyPds~l~   62 (65)
                      .-|.|||||++|+|+.+||++||++.|.
T Consensus         2 ~rI~LNVGG~~F~t~~~tL~~~~~s~l~   29 (103)
T d3kvta_           2 NRVIINVGGIRHETYKATLKKIPATRLS   29 (103)
T ss_dssp             CEEEEEETTEEEEEEHHHHTTSCSSTTT
T ss_pred             CEEEEEECCEEEEEeHHHHhhCccchhH
Confidence            3589999999999999999999998764