Psyllid ID: psy2593

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MNNALITNKNSSAHRRENIDRDCSGQWRWCHPCHSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEcccccccccHccccccccccEcccccccccEEEEccEEccEEccHHHHHHHHHHHHHccccccHHHccEEEEEcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHcc
Coil and Loop (DISEMBL)
mnnalitnknssahrrenidrdcsgqwrwchpchssgcfyfypvrhglveDWDLMERFFEQCIFKYlraepedhyflltepplntpenreytaereigippeqsLETAKAIKERYSYICPDIAKEFakydadpgkwmrk
Flexible Loop (DISEMBL)
mnnalitnknssahrreNIDRDCSGQWRWCHPCHSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTaereigippeqSLETAKAIKERYSYICPDIAKefakydadpgkwmrk
Low Complexity Region (SEG)
MNNALITNKNSSAHRRENIDRDCSGQWRWCHPCHSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRK
Disordered region (IsUnstruct)
********************RDCSGQWRWCHPCHSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLT*****************************KAIKERYSYICPDIAKEFAKY**********
Disordered Region (DISOPRED)
******************IDRDCSGQWRWCHPCHSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDAD***W***
Disordered Region (DISEMBL)
MNNALITNKNSSAHRRENIDRDCSGQWRWCHPCHSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRK
Disordered Region (DISPRO)
*N***************NIDRDCSGQWRWCHPCHSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMR*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNNALITNKNSSAHRRENIDRDCSGQWRWCHPCHSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
P32392	418	Actin-related protein 3 O	yes	N/A	0.431	0.143	0.866	9e-26
Q61WW9	426	Actin-related protein 3 O	N/A	N/A	0.381	0.124	0.905	1e-24
Q9N4I0	425	Actin-related protein 3 O	yes	N/A	0.381	0.124	0.905	1e-24
Q4V7C7	418	Actin-related protein 3 O	yes	N/A	0.381	0.126	0.905	8e-24
Q5R8R1	418	Actin-related protein 3 O	yes	N/A	0.381	0.126	0.905	8e-24
Q99JY9	418	Actin-related protein 3 O	yes	N/A	0.381	0.126	0.905	8e-24
P61158	418	Actin-related protein 3 O	yes	N/A	0.381	0.126	0.905	8e-24
P61157	418	Actin-related protein 3 O	yes	N/A	0.381	0.126	0.905	8e-24
Q90WD0	418	Actin-related protein 3 O	yes	N/A	0.381	0.126	0.905	8e-24
O73723	418	Actin-related protein 3 O	N/A	N/A	0.381	0.126	0.905	1e-23

>sp|P32392|ARP3_DROME Actin-related protein 3 OS=Drosophila melanogaster GN=Arp66B PE=2 SV=3

 Score =  115 bits (288), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 52/60 (86%), Positives = 55/60 (91%)

Query: 35  SSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           ++G    YPVRHGLVEDWDLMERF EQC+FKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct: 69  ATGYSIKYPVRHGLVEDWDLMERFLEQCVFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.
Drosophila melanogaster (taxid: 7227)

>sp|Q61WW9|ARP3_CAEBR Actin-related protein 3 OS=Caenorhabditis briggsae GN=arx-1 PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 48/53 (90%), Positives = 53/53 (100%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           YP+RHG+VEDWDLMER++EQCIFKYLRAEPEDH+FLLTEPPLNTPENREYTAE
Sbjct: 84  YPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAE 136

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q9N4I0|ARP3_CAEEL Actin-related protein 3 OS=Caenorhabditis elegans GN=arx-1 PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 48/53 (90%), Positives = 53/53 (100%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           YP+RHG+VEDWDLMER++EQCIFKYLRAEPEDH+FLLTEPPLNTPENREYTAE
Sbjct: 83  YPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAE 135

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Caenorhabditis elegans (taxid: 6239)

>sp|Q4V7C7|ARP3_RAT Actin-related protein 3 OS=Rattus norvegicus GN=Actr3 PE=1 SV=1

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 48/53 (90%), Positives = 51/53 (96%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct: 76  WPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. Plays a role in ciliogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q5R8R1|ARP3_PONAB Actin-related protein 3 OS=Pongo abelii GN=ACTR3 PE=2 SV=3

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 48/53 (90%), Positives = 51/53 (96%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct: 76  WPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Pongo abelii (taxid: 9601)

>sp|Q99JY9|ARP3_MOUSE Actin-related protein 3 OS=Mus musculus GN=Actr3 PE=1 SV=3

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 48/53 (90%), Positives = 51/53 (96%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct: 76  WPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. Plays a role in ciliogenesis.

Mus musculus (taxid: 10090)

>sp|P61158|ARP3_HUMAN Actin-related protein 3 OS=Homo sapiens GN=ACTR3 PE=1 SV=3

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 48/53 (90%), Positives = 51/53 (96%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct: 76  WPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. Plays a role in ciliogenesis.

Homo sapiens (taxid: 9606)

>sp|P61157|ARP3_BOVIN Actin-related protein 3 OS=Bos taurus GN=ACTR3 PE=1 SV=3

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 48/53 (90%), Positives = 51/53 (96%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct: 76  WPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. Plays a role in ciliogenesis.

Bos taurus (taxid: 9913)

>sp|Q90WD0|ARP3_CHICK Actin-related protein 3 OS=Gallus gallus GN=ACTR3 PE=2 SV=1

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 48/53 (90%), Positives = 51/53 (96%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct: 76  WPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Gallus gallus (taxid: 9031)

>sp|O73723|ARP3_TAKRU Actin-related protein 3 OS=Takifugu rubripes GN=actr3 PE=3 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/53 (90%), Positives = 51/53 (96%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct: 76  WPIRHGIVEDWDLMERFMEQIIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128

Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.

Takifugu rubripes (taxid: 31033)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
395843315	473	PREDICTED: LOW QUALITY PROTEIN: actin-re	0.705	0.207	0.554	4e-37
341885947	372	hypothetical protein CAEBREN_01871 [Caen	0.697	0.260	0.496	2e-25
225712920	266	Actin-related protein 3 [Lepeophtheirus	0.438	0.229	0.836	1e-24
332373344	419	unknown [Dendroctonus ponderosae]	0.438	0.145	0.868	3e-24
388523591	416	actin, partial [Cryptocercus punctulatus	0.431	0.144	0.883	4e-24
91078924	418	PREDICTED: similar to actin [Tribolium c	0.431	0.143	0.883	4e-24
125980470	418	GA20439 [Drosophila pseudoobscura pseudo	0.431	0.143	0.883	4e-24
195013992	418	GH15291 [Drosophila grimshawi] gi|193897	0.431	0.143	0.866	6e-24
156537918	416	PREDICTED: actin-related protein 3-like	0.431	0.144	0.866	6e-24
195435504	417	GK19880 [Drosophila willistoni] gi|19416	0.431	0.143	0.866	6e-24

>gi|395843315|ref|XP_003794435.1| PREDICTED: LOW QUALITY PROTEIN: actin-related protein 3 [Otolemur garnettii]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 81/146 (55%), Positives = 91/146 (62%), Gaps = 48/146 (32%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE------- 94
           +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYTAE       
Sbjct: 165 WPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFN 224

Query: 95  -----------------------------------------REIGIPPEQSLETAKAIKE 113
                                                    RE+GIPPEQSLETAKA+KE
Sbjct: 225 VPGLYIAVQVXAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKE 284

Query: 114 RYSYICPDIAKEFAKYDADPGKWMRK 139
           RYSY+CPD+ KEF KYD D  KW+++
Sbjct: 285 RYSYVCPDLVKEFNKYDTDGSKWIKQ 310

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|341885947|gb|EGT41882.1| hypothetical protein CAEBREN_01871 [Caenorhabditis brenneri]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/125 (49%), Positives = 73/125 (58%), Gaps = 28/125 (22%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLN-----TPENREYTA--- 93
           YP+RHG+VEDWDLMER++EQCIFKYLRAEPEDH+FLL     +      P    Y     
Sbjct: 84  YPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLVIDSGDGVTHCIPVADGYVIGSC 143

Query: 94  --------------------EREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADP 133
                               ERE  IP EQS E AK IKE++ Y+CPD+ KEF KYD D 
Sbjct: 144 IKHIPIAGRDITYFIQSLLREREHTIPAEQSYEVAKTIKEKFCYVCPDVMKEFVKYDTDA 203

Query: 134 GKWMR 138
            KW+R
Sbjct: 204 SKWLR 208

Source: Caenorhabditis brenneri

Species: Caenorhabditis brenneri

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|225712920|gb|ACO12306.1| Actin-related protein 3 [Lepeophtheirus salmonis]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/61 (83%), Positives = 57/61 (93%)

Query: 34  HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTA 93
           +++GC   YPVRHG+VEDWDLME+F EQCIFKYLRAEPEDH+FLLTEPPLNTPENREYTA
Sbjct: 68  NATGCAAKYPVRHGVVEDWDLMEKFMEQCIFKYLRAEPEDHHFLLTEPPLNTPENREYTA 127

Query: 94  E 94
           E
Sbjct: 128 E 128

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373344|gb|AEE61813.1| unknown [Dendroctonus ponderosae]

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/61 (86%), Positives = 56/61 (91%)

Query: 34  HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTA 93
           +++G    YPVRHGLVEDWDLMERF EQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTA
Sbjct: 69  NATGYAVKYPVRHGLVEDWDLMERFLEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTA 128

Query: 94  E 94
           E
Sbjct: 129 E 129

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|388523591|gb|AFK49794.1| actin, partial [Cryptocercus punctulatus]

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 55/60 (91%)

Query: 35  SSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           ++G    YPVRHGLVEDWDLMERF EQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct: 67  ATGYAVKYPVRHGLVEDWDLMERFLEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 126

Source: Cryptocercus punctulatus

Species: Cryptocercus punctulatus

Genus: Cryptocercus

Family: Cryptocercidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078924|ref|XP_973781.1| PREDICTED: similar to actin [Tribolium castaneum] gi|270003694|gb|EFA00142.1| hypothetical protein TcasGA2_TC002963 [Tribolium castaneum]

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 55/60 (91%)

Query: 35  SSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           ++G    YPVRHGLVEDWDLMERF EQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct: 69  ATGYAVKYPVRHGLVEDWDLMERFLEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125980470|ref|XP_001354259.1| GA20439 [Drosophila pseudoobscura pseudoobscura] gi|195167743|ref|XP_002024692.1| GL22484 [Drosophila persimilis] gi|54642565|gb|EAL31312.1| GA20439 [Drosophila pseudoobscura pseudoobscura] gi|194108097|gb|EDW30140.1| GL22484 [Drosophila persimilis]

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 55/60 (91%)

Query: 35  SSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           ++G    YPVRHGLVEDWDLMERF EQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct: 69  ATGYSIKYPVRHGLVEDWDLMERFLEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195013992|ref|XP_001983939.1| GH15291 [Drosophila grimshawi] gi|193897421|gb|EDV96287.1| GH15291 [Drosophila grimshawi]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/60 (86%), Positives = 55/60 (91%)

Query: 35  SSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           ++G    YPVRHGLVEDWDLMERF EQC+FKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct: 69  ATGYSIKYPVRHGLVEDWDLMERFLEQCVFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156537918|ref|XP_001608144.1| PREDICTED: actin-related protein 3-like [Nasonia vitripennis]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/60 (86%), Positives = 55/60 (91%)

Query: 35  SSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           ++G    YPVRHGLVEDWDLMERF +QCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct: 68  ATGYAVKYPVRHGLVEDWDLMERFLQQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 127

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195435504|ref|XP_002065720.1| GK19880 [Drosophila willistoni] gi|194161805|gb|EDW76706.1| GK19880 [Drosophila willistoni]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/60 (86%), Positives = 55/60 (91%)

Query: 35  SSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           ++G    YPVRHGLVEDWDLMERF EQC+FKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct: 69  ATGYSIKYPVRHGLVEDWDLMERFLEQCVFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
FB|FBgn0262716	418	Arp3 "Actin-related protein 3"	0.381	0.126	0.962	8.6e-47
UNIPROTKB|F1N049	384	ACTR3 "Actin-related protein 3	0.381	0.138	0.905	3.2e-43
UNIPROTKB|J9PAK3	367	ACTR3B "Uncharacterized protei	0.381	0.144	0.905	3.2e-43
UNIPROTKB|B4DXW1	367	ACTR3 "cDNA, FLJ79295, highly	0.381	0.144	0.905	3.2e-43
UNIPROTKB|F5H3P5	356	ACTR3 "Actin-related protein 3	0.381	0.148	0.905	3.2e-43
UNIPROTKB|F1NW48	419	ACTR3B "Uncharacterized protei	0.381	0.126	0.867	3.7e-43
ZFIN|ZDB-GENE-040428-2	418	actr3 "ARP3 actin-related prot	0.381	0.126	0.905	3.8e-43
UNIPROTKB|J9NWY2	418	ACTR3B "Uncharacterized protei	0.381	0.126	0.849	4.7e-43
RGD|1565759	418	Actr3b "ARP3 actin-related pro	0.381	0.126	0.849	4.7e-43
UNIPROTKB|F1LRK8	417	Actr3 "Actin-related protein 3	0.381	0.127	0.905	5.9e-43

FB|FBgn0262716 Arp3 "Actin-related protein 3" [Drosophila melanogaster (taxid:7227)]

 Score = 291 (107.5 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
 Identities = 51/53 (96%), Positives = 52/53 (98%)

Query:    42 YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
             YPVRHGLVEDWDLMERF EQC+FKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct:    76 YPVRHGLVEDWDLMERFLEQCVFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128

GO:0005884 "actin filament" evidence=ISS

GO:0003779 "actin binding" evidence=ISS

GO:0007010 "cytoskeleton organization" evidence=ISS

GO:0005885 "Arp2/3 protein complex" evidence=ISS;NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=ISS

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0030037 "actin filament reorganization involved in cell cycle" evidence=IPI

GO:0030589 "pseudocleavage involved in syncytial blastoderm formation" evidence=IPI

GO:0015629 "actin cytoskeleton" evidence=NAS

GO:0008064 "regulation of actin polymerization or depolymerization" evidence=NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0030027 "lamellipodium" evidence=IDA

GO:0007520 "myoblast fusion" evidence=IGI;IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0030713 "ovarian follicle cell stalk formation" evidence=IMP

GO:0006886 "intracellular protein transport" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0051491 "positive regulation of filopodium assembly" evidence=IMP

GO:0010592 "positive regulation of lamellipodium assembly" evidence=IMP

UNIPROTKB|F1N049 ACTR3 "Actin-related protein 3" [Bos taurus (taxid:9913)]

 Score = 274 (101.5 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
 Identities = 48/53 (90%), Positives = 51/53 (96%)

Query:    42 YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
             +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct:    42 WPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94

GO:0060271 "cilium morphogenesis" evidence=IEA

GO:0051653 "spindle localization" evidence=IEA

GO:0051321 "meiotic cell cycle" evidence=IEA

GO:0033206 "cytokinesis after meiosis" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0008356 "asymmetric cell division" evidence=IEA

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|J9PAK3 ACTR3B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 274 (101.5 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
 Identities = 48/53 (90%), Positives = 51/53 (96%)

Query:    42 YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
             +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct:    25 WPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 77

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|B4DXW1 ACTR3 "cDNA, FLJ79295, highly similar to Actin-like protein 3" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
 Identities = 48/53 (90%), Positives = 51/53 (96%)

Query:    42 YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
             +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct:    25 WPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 77

GO:0005524 "ATP binding" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0002102 "podosome" evidence=IEA

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEA

GO:0008356 "asymmetric cell division" evidence=IEA

GO:0009743 "response to carbohydrate stimulus" evidence=IEA

GO:0010592 "positive regulation of lamellipodium assembly" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030056 "hemidesmosome" evidence=IEA

GO:0033206 "cytokinesis after meiosis" evidence=IEA

GO:0043519 "regulation of myosin II filament organization" evidence=IEA

GO:0045666 "positive regulation of neuron differentiation" evidence=IEA

GO:0046677 "response to antibiotic" evidence=IEA

GO:0050775 "positive regulation of dendrite morphogenesis" evidence=IEA

GO:0051321 "meiotic cell cycle" evidence=IEA

GO:0051491 "positive regulation of filopodium assembly" evidence=IEA

GO:0051653 "spindle localization" evidence=IEA

GO:0060076 "excitatory synapse" evidence=IEA

UNIPROTKB|F5H3P5 ACTR3 "Actin-related protein 3" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
 Identities = 48/53 (90%), Positives = 51/53 (96%)

Query:    42 YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
             +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct:    14 WPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 66

GO:0005524 "ATP binding" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

UNIPROTKB|F1NW48 ACTR3B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 266 (98.7 bits), Expect = 3.7e-43, Sum P(2) = 3.7e-43
 Identities = 46/53 (86%), Positives = 50/53 (94%)

Query:    42 YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
             +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFL+TEPPLNTPENREY AE
Sbjct:    77 WPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLMTEPPLNTPENREYLAE 129

GO:0005524 "ATP binding" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

ZFIN|ZDB-GENE-040428-2 actr3 "ARP3 actin-related protein 3 homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 274 (101.5 bits), Expect = 3.8e-43, Sum P(2) = 3.8e-43
 Identities = 48/53 (90%), Positives = 51/53 (96%)

Query:    42 YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
             +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct:    76 WPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128

GO:0005524 "ATP binding" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

UNIPROTKB|J9NWY2 ACTR3B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 265 (98.3 bits), Expect = 4.7e-43, Sum P(2) = 4.7e-43
 Identities = 45/53 (84%), Positives = 50/53 (94%)

Query:    42 YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
             +P+RHG++EDWDLMERF EQ IFKYLRAEPEDHYFL+TEPPLNTPENREY AE
Sbjct:    76 WPIRHGIIEDWDLMERFMEQVIFKYLRAEPEDHYFLMTEPPLNTPENREYLAE 128

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|1565759 Actr3b "ARP3 actin-related protein 3 homolog B (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 265 (98.3 bits), Expect = 4.7e-43, Sum P(2) = 4.7e-43
 Identities = 45/53 (84%), Positives = 50/53 (94%)

Query:    42 YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
             +P+RHG+VEDWDLMERF EQ +FKYLRAEPEDHYFL+TEPPLNTPENREY AE
Sbjct:    76 WPIRHGIVEDWDLMERFMEQVVFKYLRAEPEDHYFLMTEPPLNTPENREYLAE 128

GO:0005524 "ATP binding" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

UNIPROTKB|F1LRK8 Actr3 "Actin-related protein 3" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 5.9e-43, Sum P(2) = 5.9e-43
 Identities = 48/53 (90%), Positives = 51/53 (96%)

Query:    42 YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
             +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct:    76 WPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128

GO:0005524 "ATP binding" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P32392	ARP3_DROME	No assigned EC number	0.8666	0.4316	0.1435	yes	N/A
P32390	ARP3_SCHPO	No assigned EC number	0.7166	0.4316	0.1405	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	139
PTZ00280	414	PTZ00280, PTZ00280, Actin-related protein 3; Provi	2e-36
smart00268	373	smart00268, ACTIN, Actin	4e-22
pfam00022	367	pfam00022, Actin, Actin	3e-17
PTZ00280	414	PTZ00280, PTZ00280, Actin-related protein 3; Provi	7e-17
COG5277	444	COG5277, COG5277, Actin and related proteins [Cyto	2e-12
PTZ00281	376	PTZ00281, PTZ00281, actin; Provisional	2e-11
PTZ00004	378	PTZ00004, PTZ00004, actin-2; Provisional	2e-09
PTZ00466	380	PTZ00466, PTZ00466, actin-like protein; Provisiona	3e-09
cd00012	185	cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-	9e-05
PTZ00452	375	PTZ00452, PTZ00452, actin; Provisional	2e-04

>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional

 Score =  128 bits (323), Expect = 2e-36
 Identities = 44/61 (72%), Positives = 52/61 (85%)

Query: 34  HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTA 93
            S      YP++HG+VEDWDLME+F+EQCIFKYLR EPE+HYF+LTEPP+N PENREYTA
Sbjct: 63  ASKSYTLTYPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTA 122

Query: 94  E 94
           E
Sbjct: 123 E 123

Length = 414

>gnl|CDD|214592 smart00268, ACTIN, Actin

 Score = 89.6 bits (223), Expect = 4e-22
 Identities = 28/62 (45%), Positives = 37/62 (59%)

Query: 34  HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTA 93
              G    YP+ +G+VE+WD ME+ ++   F  LR EPE+H  LLTEPP+N   NRE   
Sbjct: 56  KRGGLELKYPIENGIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKIL 115

Query: 94  ER 95
           E 
Sbjct: 116 EI 117

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373

>gnl|CDD|200935 pfam00022, Actin, Actin

 Score = 76.1 bits (188), Expect = 3e-17
 Identities = 29/53 (54%), Positives = 37/53 (69%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           YP+  G+VE+WD ME+ +E   F+ LR +PE+H  LLTEPPLN P NRE   E
Sbjct: 62  YPIEDGIVENWDAMEKIWEHTFFEELRVDPEEHPLLLTEPPLNPPANREKATE 114

Length = 367

>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional

 Score = 75.2 bits (185), Expect = 7e-17
 Identities = 25/46 (54%), Positives = 30/46 (65%)

Query: 94  EREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRK 139
           ER   IP E  L  A+ IKE+Y Y+ PDIAKEF KYD+DP    +K
Sbjct: 207 ERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKK 252

Length = 414

>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton]

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFK--YLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           YP+ +G++ +WD ME+ ++   F    L   PE+H  LLTEPPLN P NRE   E
Sbjct: 73  YPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITE 127

Length = 444

>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 24/49 (48%), Positives = 31/49 (63%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG+V +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 70  YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 118

Length = 376

>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 24/53 (45%), Positives = 32/53 (60%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           YP+ HG+V +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE   +
Sbjct: 70  YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 122

Length = 378

>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional

 Score = 53.4 bits (128), Expect = 3e-09
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           YP+ HG++E+W+ ME  +   ++  ++   E+H  LLTE PLN  +N+E  AE
Sbjct: 76  YPINHGIIENWNDMENIWIH-VYNSMKINSEEHPVLLTEAPLNPQKNKEKIAE 127

Length = 380

>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

 Score = 39.9 bits (93), Expect = 9e-05
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 47  GLVEDWDLMERFFEQCIFKYLR-AEPEDHYFLLTEPPLNTPENREYT-AEREIGIPPEQS 104
           G V D D +E    + + + LR  + E     +TEP     ENRE       + IP   +
Sbjct: 35  GAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPLALA 94

Query: 105 LETA 108
           LE  
Sbjct: 95  LEDL 98

This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185

>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 43  PVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           P+++G++  WD +E  +    +  L   PED    +T+ P+N+  NRE
Sbjct: 70  PIQNGIINSWDDIEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRE 117

Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG0677|consensus	389		99.93
KOG0676|consensus	372		99.9
PTZ00452	375	actin; Provisional	99.87
PTZ00466	380	actin-like protein; Provisional	99.84
PTZ00281	376	actin; Provisional	99.83
PTZ00280	414	Actin-related protein 3; Provisional	99.8
PTZ00004	378	actin-2; Provisional	99.78
KOG0678|consensus	415		99.71
KOG0679|consensus	426		99.62
smart00268	373	ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki	99.59
cd00012	371	ACTIN Actin; An ubiquitous protein involved in the	99.52
KOG0681|consensus	645		99.52
COG5277	444	Actin and related proteins [Cytoskeleton]	99.5
KOG0680|consensus	400		99.45
PF00022	393	Actin: Actin; InterPro: IPR004000 Actin [, ] is a	99.45
PRK13929	335	rod-share determining protein MreBH; Provisional	98.85
PRK13930	335	rod shape-determining protein MreB; Provisional	98.71
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	98.68
PRK13927	334	rod shape-determining protein MreB; Provisional	98.58
PRK13928	336	rod shape-determining protein Mbl; Provisional	97.43
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	96.53
KOG0797|consensus	618		90.83

>KOG0677|consensus

Probab=99.93  E-value=8e-27  Score=189.76  Aligned_cols=103  Identities=31%  Similarity=0.454  Sum_probs=95.2

Q ss_pred             CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc-------------------
Q psy2593          34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE-------------------   94 (139)
Q Consensus        34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE-------------------   94 (139)
                      -|..|++.|||++|+|.|||+|+++|+|+|.++|+++|.++.||+||||+||.++||||.|                   
T Consensus        62 lRs~L~i~YPmeNGivrnwddM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVL  141 (389)
T KOG0677|consen   62 LRSLLDINYPMENGIVRNWDDMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVL  141 (389)
T ss_pred             HHHHHhcCCccccccccChHHHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHH
Confidence            4788999999999999999999999999999999999999999999999999999999999                   


Q ss_pred             -------------------------------------------------------cCcccCCcChHHHHHHhhhhccccc
Q psy2593          95 -------------------------------------------------------REIGIPPEQSLETAKAIKERYSYIC  119 (139)
Q Consensus        95 -------------------------------------------------------~G~~f~t~~~~~~v~~IKE~~CyVa  119 (139)
                                                                             +||.|..++|.++||.|||++|||+
T Consensus       142 tLYAQGL~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYis  221 (389)
T KOG0677|consen  142 TLYAQGLLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYIS  221 (389)
T ss_pred             HHHHhcccceEEEecCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEe
Confidence                                                                   5888999999999999999999999


Q ss_pred             cCHHHHHHhhcCCCCCcc
Q psy2593         120 PDIAKEFAKYDADPGKWM  137 (139)
Q Consensus       120 ~Dy~~E~~~~~~~~~~~~  137 (139)
                      -|++.|.+++.+ .+.++
T Consensus       222 Yd~e~e~kLalE-TTvLv  238 (389)
T KOG0677|consen  222 YDLELEQKLALE-TTVLV  238 (389)
T ss_pred             echhhhhHhhhh-heeee
Confidence            999999877644 34443

>KOG0676|consensus

Probab=99.90  E-value=1.4e-24  Score=183.23  Aligned_cols=90  Identities=36%  Similarity=0.643  Sum_probs=85.8

Q ss_pred             eeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc------------------------
Q psy2593          39 FYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE------------------------   94 (139)
Q Consensus        39 ~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE------------------------   94 (139)
                      .+++||++|+|+|||+||.||.|+|.++|++.|++||||+||||++|+++||+|+|                        
T Consensus        65 ~l~~Pie~Giv~~wd~me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavlya~g~  144 (372)
T KOG0676|consen   65 TLKYPIERGIVTDWDDMEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVLYASGR  144 (372)
T ss_pred             cccCccccccccchHHHHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHHHHcCC
Confidence            67999999999999999999999999999999999999999999999999999999                        


Q ss_pred             ------------------------------------------------cCcccCCcChHHHHHHhhhhccccccCHHHHH
Q psy2593          95 ------------------------------------------------REIGIPPEQSLETAKAIKERYSYICPDIAKEF  126 (139)
Q Consensus        95 ------------------------------------------------~G~~f~t~~~~~~v~~IKE~~CyVa~Dy~~E~  126 (139)
                                                                      .|++|.+..+++++++|||++|||++||++|+
T Consensus       145 ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~  224 (372)
T KOG0676|consen  145 TTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEE  224 (372)
T ss_pred             eeEEEEEcCCCceeeeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhh
Confidence                                                            36678889999999999999999999999998


Q ss_pred             Hh
Q psy2593         127 AK  128 (139)
Q Consensus       127 ~~  128 (139)
                      ..
T Consensus       225 ~~  226 (372)
T KOG0676|consen  225 ET  226 (372)
T ss_pred             hc
Confidence            75

>PTZ00452 actin; Provisional

Probab=99.87  E-value=4.6e-22  Score=167.49  Aligned_cols=96  Identities=25%  Similarity=0.414  Sum_probs=86.7

Q ss_pred             CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc-------------------
Q psy2593          34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE-------------------   94 (139)
Q Consensus        34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE-------------------   94 (139)
                      .++.+++++||++|+|+|||.||.+|+|+|.++|+++|+++|||+|||+++++.+|++|+|                   
T Consensus        61 ~~~~~~l~~Pi~~G~I~dwd~~e~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~l  140 (375)
T PTZ00452         61 KRGVLAIKEPIQNGIINSWDDIEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVL  140 (375)
T ss_pred             cccCcEEcccCcCCEEcCHHHHHHHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHH
Confidence            5778999999999999999999999999999999999999999999999999999999999                   


Q ss_pred             -------------------------------------------------------cCcccCCcChHHHHHHhhhhccccc
Q psy2593          95 -------------------------------------------------------REIGIPPEQSLETAKAIKERYSYIC  119 (139)
Q Consensus        95 -------------------------------------------------------~G~~f~t~~~~~~v~~IKE~~CyVa  119 (139)
                                                                             +|+.+.+..+.+++++|||++|||+
T Consensus       141 slya~g~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~  220 (375)
T PTZ00452        141 SLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTA  220 (375)
T ss_pred             HHHHCCCceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccc
Confidence                                                                   2334445568999999999999999


Q ss_pred             cCHHHHHHhh
Q psy2593         120 PDIAKEFAKY  129 (139)
Q Consensus       120 ~Dy~~E~~~~  129 (139)
                      .||.+|++..
T Consensus       221 ~d~~~e~~~~  230 (375)
T PTZ00452        221 LDPQDEKRIY  230 (375)
T ss_pred             CcHHHHHHHh
Confidence            9999998643

>PTZ00466 actin-like protein; Provisional

Probab=99.84  E-value=5e-21  Score=161.54  Aligned_cols=94  Identities=30%  Similarity=0.486  Sum_probs=85.5

Q ss_pred             CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc-------------------
Q psy2593          34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE-------------------   94 (139)
Q Consensus        34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE-------------------   94 (139)
                      .++.+.+++||++|+|+|||.||.||+|+| ++|+++|.++||||||++++|+..|++|+|                   
T Consensus        68 ~~~~~~l~~Pi~~G~v~dwd~~e~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~l  146 (380)
T PTZ00466         68 YRGLLKVTYPINHGIIENWNDMENIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAIL  146 (380)
T ss_pred             hCcCceeCccccCCeECCHHHHHHHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHH
Confidence            477889999999999999999999999999 789999999999999999999999999999                   


Q ss_pred             -------------------------------------------------------cCcccCCcChHHHHHHhhhhccccc
Q psy2593          95 -------------------------------------------------------REIGIPPEQSLETAKAIKERYSYIC  119 (139)
Q Consensus        95 -------------------------------------------------------~G~~f~t~~~~~~v~~IKE~~CyVa  119 (139)
                                                                             .|+.+.+..+.+++++|||++|||+
T Consensus       147 sl~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~  226 (380)
T PTZ00466        147 SLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVS  226 (380)
T ss_pred             HHHhcCCceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEec
Confidence                                                                   2334556778999999999999999


Q ss_pred             cCHHHHHHh
Q psy2593         120 PDIAKEFAK  128 (139)
Q Consensus       120 ~Dy~~E~~~  128 (139)
                      .||.+|++.
T Consensus       227 ~d~~~e~~~  235 (380)
T PTZ00466        227 FNMNKEKNS  235 (380)
T ss_pred             CChHHHHhh
Confidence            999998764

>PTZ00281 actin; Provisional

Probab=99.83  E-value=8.6e-21  Score=159.49  Aligned_cols=96  Identities=33%  Similarity=0.595  Sum_probs=87.0

Q ss_pred             CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc-------------------
Q psy2593          34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE-------------------   94 (139)
Q Consensus        34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE-------------------   94 (139)
                      .++.+++++||++|+|+|||.+|.+|+|+|.+.|+++|+++|||+|||+++++..|++|+|                   
T Consensus        62 ~~~~~~l~~Pi~~G~i~dwd~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~l  141 (376)
T PTZ00281         62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL  141 (376)
T ss_pred             cccCcEEeccCcCCEEcCHHHHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHH
Confidence            5678999999999999999999999999998899999999999999999999999999999                   


Q ss_pred             -------------------------------------------------------cCcccCCcChHHHHHHhhhhccccc
Q psy2593          95 -------------------------------------------------------REIGIPPEQSLETAKAIKERYSYIC  119 (139)
Q Consensus        95 -------------------------------------------------------~G~~f~t~~~~~~v~~IKE~~CyVa  119 (139)
                                                                             +|+.|.+..+.+++++|||++|||+
T Consensus       142 s~ya~g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~  221 (376)
T PTZ00281        142 SLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVA  221 (376)
T ss_pred             HHHhcCCceEEEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEec
Confidence                                                                   2334555678999999999999999


Q ss_pred             cCHHHHHHhh
Q psy2593         120 PDIAKEFAKY  129 (139)
Q Consensus       120 ~Dy~~E~~~~  129 (139)
                      .||.+|++..
T Consensus       222 ~d~~~~~~~~  231 (376)
T PTZ00281        222 LDFEAEMQTA  231 (376)
T ss_pred             CCchHHHHhh
Confidence            9999988754

>PTZ00280 Actin-related protein 3; Provisional

Probab=99.80  E-value=1.8e-19  Score=152.92  Aligned_cols=61  Identities=72%  Similarity=1.362  Sum_probs=58.1

Q ss_pred             CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc
Q psy2593          34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE   94 (139)
Q Consensus        34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE   94 (139)
                      .+..+++++||++|+|+|||.||.+|+|+|.++|+++|.++|||+|||+++|+..|++++|
T Consensus        63 ~~~~~~l~~Pi~~G~I~dwd~~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e  123 (414)
T PTZ00280         63 ASKSYTLTYPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAE  123 (414)
T ss_pred             CcCCcEEecCccCCEeCCHHHHHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHH
Confidence            3567999999999999999999999999998899999999999999999999999999999

>PTZ00004 actin-2; Provisional

Probab=99.78  E-value=3.9e-19  Score=149.45  Aligned_cols=96  Identities=34%  Similarity=0.600  Sum_probs=85.4

Q ss_pred             CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc-------------------
Q psy2593          34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE-------------------   94 (139)
Q Consensus        34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE-------------------   94 (139)
                      .++.+++++|+++|+|+|||.+|.+|+|+|.++|+++|.++|||+|||+++|+..|++++|                   
T Consensus        62 ~~~~~~l~~Pi~~G~i~d~d~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~l  141 (378)
T PTZ00004         62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVL  141 (378)
T ss_pred             ccccceEcccCcCCEEcCHHHHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHH
Confidence            4567899999999999999999999999998899999999999999999999999999999                   


Q ss_pred             -------------------------------------------------------cCcccCCcChHHHHHHhhhhccccc
Q psy2593          95 -------------------------------------------------------REIGIPPEQSLETAKAIKERYSYIC  119 (139)
Q Consensus        95 -------------------------------------------------------~G~~f~t~~~~~~v~~IKE~~CyVa  119 (139)
                                                                             +|+.+.+..+.+++++|||++|||+
T Consensus       142 s~ya~g~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~  221 (378)
T PTZ00004        142 SLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIA  221 (378)
T ss_pred             HHHhcCCceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeec
Confidence                                                                   1223445567899999999999999


Q ss_pred             cCHHHHHHhh
Q psy2593         120 PDIAKEFAKY  129 (139)
Q Consensus       120 ~Dy~~E~~~~  129 (139)
                      .||.+|++..
T Consensus       222 ~d~~~~~~~~  231 (378)
T PTZ00004        222 LDFDEEMGNS  231 (378)
T ss_pred             CCHHHHHhhh
Confidence            9999998643

>KOG0678|consensus

Probab=99.71  E-value=6e-18  Score=140.85  Aligned_cols=105  Identities=79%  Similarity=1.395  Sum_probs=94.1

Q ss_pred             CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc-------------------
Q psy2593          34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE-------------------   94 (139)
Q Consensus        34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE-------------------   94 (139)
                      ..+.+++.+|+++|.|.|||.||.+|+..+.+.|..+|++|-.||||||+|++++|+.++|                   
T Consensus        67 ~~~~ysl~ypiRhg~ve~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavL  146 (415)
T KOG0678|consen   67 DATTYSLKYPIRHGQVEDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVL  146 (415)
T ss_pred             hhcccccccceeccccccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHH
Confidence            3568999999999999999999999999988999999999999999999999999999999                   


Q ss_pred             ---------------------------------------------------------------cCcccCCcChHHHHHHh
Q psy2593          95 ---------------------------------------------------------------REIGIPPEQSLETAKAI  111 (139)
Q Consensus        95 ---------------------------------------------------------------~G~~f~t~~~~~~v~~I  111 (139)
                                                                                     ++..++.....++.+.|
T Consensus       147 ALaaswts~~v~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~i  226 (415)
T KOG0678|consen  147 ALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAI  226 (415)
T ss_pred             HHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHH
Confidence                                                                           12234456678899999


Q ss_pred             hhhccccccCHHHHHHhhcCCCCCccc
Q psy2593         112 KERYSYICPDIAKEFAKYDADPGKWMR  138 (139)
Q Consensus       112 KE~~CyVa~Dy~~E~~~~~~~~~~~~~  138 (139)
                      ||++||+++|..+|....+.+|++|.+
T Consensus       227 Ke~ycy~cPdivkef~k~d~ep~K~ik  253 (415)
T KOG0678|consen  227 KEKYCYTCPDIVKEFAKYDREPAKWIK  253 (415)
T ss_pred             HhhhcccCcHHHHHHHHhccCHHHHHH
Confidence            999999999999999888888888754

>KOG0679|consensus

Probab=99.62  E-value=3.7e-16  Score=131.99  Aligned_cols=80  Identities=34%  Similarity=0.558  Sum_probs=74.3

Q ss_pred             cCCCcccccccccCCCCCCccccCCCCCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChh
Q psy2593           8 NKNSSAHRRENIDRDCSGQWRWCHPCHSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPE   87 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~   87 (139)
                      +.+....+++|||++-.+       .+|+++++..|+++|+|.|||.++.+|+|.|.++|+++|.+||+|||||++|+++
T Consensus        48 ~~d~~~~~~~y~~~~ai~-------~pr~gmEv~~~i~nGlv~dWD~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~  120 (426)
T KOG0679|consen   48 DGDAEDKKGYYVDENAIH-------VPRPGMEVKTPIKNGLVEDWDLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRA  120 (426)
T ss_pred             cCccccccceEeechhcc-------CCCCCCeeccchhcCCcccHHHHHHHHHHHHhhhhhcCccccceeeecCCCCcHH
Confidence            445566677899999988       5699999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcc
Q psy2593          88 NREYTAE   94 (139)
Q Consensus        88 ~Rek~aE   94 (139)
                      +|+|++|
T Consensus       121 ~Rek~~E  127 (426)
T KOG0679|consen  121 NREKLTE  127 (426)
T ss_pred             HHHHHHH
Confidence            9999999

>smart00268 ACTIN Actin

Probab=99.59  E-value=3.7e-15  Score=123.95  Aligned_cols=95  Identities=40%  Similarity=0.691  Sum_probs=82.8

Q ss_pred             CCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc--------------------
Q psy2593          35 SSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE--------------------   94 (139)
Q Consensus        35 r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE--------------------   94 (139)
                      ++.+.+++|+++|+|.|||.+|.+|+|+|.+.|++.|.++||++|+|++++...|++++|                    
T Consensus        57 ~~~~~~~~P~~~G~i~d~~~~e~i~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a  136 (373)
T smart00268       57 RGGLELKYPIEHGIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLS  136 (373)
T ss_pred             CCCceecCCCcCCEEeCHHHHHHHHHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHH
Confidence            556689999999999999999999999998789999999999999999999999999999                    


Q ss_pred             -------------cCc-----------------------------------------ccCCcChHHHHHHhhhhcccccc
Q psy2593          95 -------------REI-----------------------------------------GIPPEQSLETAKAIKERYSYICP  120 (139)
Q Consensus        95 -------------~G~-----------------------------------------~f~t~~~~~~v~~IKE~~CyVa~  120 (139)
                                   .|+                                         .+....+.+++++|||++|||+.
T Consensus       137 ~~~~g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~  216 (373)
T smart00268      137 LYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAE  216 (373)
T ss_pred             HHhCCCCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecC
Confidence                         111                                         22334578899999999999999


Q ss_pred             CHHHHHHhh
Q psy2593         121 DIAKEFAKY  129 (139)
Q Consensus       121 Dy~~E~~~~  129 (139)
                      ++.+|++..
T Consensus       217 ~~~~~~~~~  225 (373)
T smart00268      217 DFEKEMKKA  225 (373)
T ss_pred             ChHHHHHHh
Confidence            999988654

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily

>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton

Probab=99.52  E-value=3.4e-14  Score=118.28  Aligned_cols=90  Identities=41%  Similarity=0.720  Sum_probs=79.7

Q ss_pred             cceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc----------------------
Q psy2593          37 GCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE----------------------   94 (139)
Q Consensus        37 ~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE----------------------   94 (139)
                      .+.+++|+++|.|+|||.++.+|+|+|.+.|.+++.++||++++|++++...|++++|                      
T Consensus        59 ~~~~~~P~~~G~i~d~~~~e~~~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~  138 (371)
T cd00012          59 GLELIYPIEHGIVVDWDDMEKIWDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLY  138 (371)
T ss_pred             ceEEcccccCCEEeCHHHHHHHHHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHH
Confidence            5899999999999999999999999998888899999999999999999999999999                      


Q ss_pred             -----------cCc-----------------------------------------ccCCcChHHHHHHhhhhccccccCH
Q psy2593          95 -----------REI-----------------------------------------GIPPEQSLETAKAIKERYSYICPDI  122 (139)
Q Consensus        95 -----------~G~-----------------------------------------~f~t~~~~~~v~~IKE~~CyVa~Dy  122 (139)
                                 .|+                                         .+....+..++++|||++|||+.++
T Consensus       139 ~~g~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~  218 (371)
T cd00012         139 ASGRTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDI  218 (371)
T ss_pred             hcCCCeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCH
Confidence                       111                                         1234557899999999999999999


Q ss_pred             HHHH
Q psy2593         123 AKEF  126 (139)
Q Consensus       123 ~~E~  126 (139)
                      .+++
T Consensus       219 ~~~~  222 (371)
T cd00012         219 EEEQ  222 (371)
T ss_pred             HHHH
Confidence            9886

Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.

>KOG0681|consensus

Probab=99.52  E-value=1.9e-14  Score=125.89  Aligned_cols=93  Identities=24%  Similarity=0.256  Sum_probs=81.3

Q ss_pred             ceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCC--CCcceEEecCCCCChhhhhhhcc---------------------
Q psy2593          38 CFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEP--EDHYFLLTEPPLNTPENREYTAE---------------------   94 (139)
Q Consensus        38 l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p--~e~pvLlTEp~~n~~~~Rek~aE---------------------   94 (139)
                      ...++||++.+|+||+.||+|++|+| .+||+++  .+|||+|||+.+||..+|++|+|                     
T Consensus        80 s~~rSPFd~nVvtNwel~E~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~  158 (645)
T KOG0681|consen   80 SSPRSPFDRNVVTNWELMEQILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSF  158 (645)
T ss_pred             ccCCCCCcCCccccHHHHHHHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHH
Confidence            45689999999999999999999999 7899998  58999999999999999999999                     


Q ss_pred             ----------------c--------------------------Cc---------------ccCCcChHHHHHHhhhhccc
Q psy2593          95 ----------------R--------------------------EI---------------GIPPEQSLETAKAIKERYSY  117 (139)
Q Consensus        95 ----------------~--------------------------G~---------------~f~t~~~~~~v~~IKE~~Cy  117 (139)
                                      .                          |+               .|.+..++.-.+.+++.+||
T Consensus       159 ~hN~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcy  238 (645)
T KOG0681|consen  159 YHNYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCY  238 (645)
T ss_pred             hhccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhce
Confidence                            0                          11               13456788899999999999


Q ss_pred             cccCHHHHHHhhcC
Q psy2593         118 ICPDIAKEFAKYDA  131 (139)
Q Consensus       118 Va~Dy~~E~~~~~~  131 (139)
                      ||.||..|+.....
T Consensus       239 is~DY~eei~~~l~  252 (645)
T KOG0681|consen  239 ISPDYREEIIKILE  252 (645)
T ss_pred             eCcchHHHHHHHhh
Confidence            99999999876644

>COG5277 Actin and related proteins [Cytoskeleton]

Probab=99.50  E-value=3.1e-14  Score=123.01  Aligned_cols=59  Identities=44%  Similarity=0.786  Sum_probs=56.5

Q ss_pred             CcceeeCcccCCeecCHHHHHHHHHHHHhh--hcCCCCCCcceEEecCCCCChhhhhhhcc
Q psy2593          36 SGCFYFYPVRHGLVEDWDLMERFFEQCIFK--YLRAEPEDHYFLLTEPPLNTPENREYTAE   94 (139)
Q Consensus        36 ~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~--~L~v~p~e~pvLlTEp~~n~~~~Rek~aE   94 (139)
                      +.+.+++|+++|.|.|||+||.+|+|+|.+  .+...+.+|||++|||+++++++|++++|
T Consensus        67 ~~~~~~~p~~~g~i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e  127 (444)
T COG5277          67 SLLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITE  127 (444)
T ss_pred             ccceeecccccCccCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHH
Confidence            389999999999999999999999999988  68889999999999999999999999999

>KOG0680|consensus

Probab=99.45  E-value=9.8e-14  Score=115.63  Aligned_cols=97  Identities=23%  Similarity=0.397  Sum_probs=82.4

Q ss_pred             CCcceeeCcccCCeecCHHHHHHHHHHHHhhh-cCCCCCCcceEEecCCCCChhhhhhhcc-------------------
Q psy2593          35 SSGCFYFYPVRHGLVEDWDLMERFFEQCIFKY-LRAEPEDHYFLLTEPPLNTPENREYTAE-------------------   94 (139)
Q Consensus        35 r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~-L~v~p~e~pvLlTEp~~n~~~~Rek~aE-------------------   94 (139)
                      -..|.++.|+++|+++|||....+|+|+|.+. ++++..++.|++|||.++-++..+.+.|                   
T Consensus        54 ~ssL~y~rp~erGyLvnW~tq~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~l  133 (400)
T KOG0680|consen   54 ISSLFYRRPHERGYLVNWDTQSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVL  133 (400)
T ss_pred             ccceEEeehhhcceeEeehhHHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHh
Confidence            34678899999999999999999999999642 3466789999999999999888888888                   


Q ss_pred             -------------------------cCcccC---------------------------------------CcChHHHHHH
Q psy2593          95 -------------------------REIGIP---------------------------------------PEQSLETAKA  110 (139)
Q Consensus        95 -------------------------~G~~f~---------------------------------------t~~~~~~v~~  110 (139)
                                               .||+|+                                       .+.+..+|++
T Consensus       134 va~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmdET~vVNe  213 (400)
T KOG0680|consen  134 VAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMDETYVVNE  213 (400)
T ss_pred             cchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccchhhhhhh
Confidence                                     366542                                       5778999999


Q ss_pred             hhhhccccccCHHHHHHhhcC
Q psy2593         111 IKERYSYICPDIAKEFAKYDA  131 (139)
Q Consensus       111 IKE~~CyVa~Dy~~E~~~~~~  131 (139)
                      |||+.||||.||++.|+.+..
T Consensus       214 iKEdvcfVSqnF~~~m~~~~~  234 (400)
T KOG0680|consen  214 IKEDVCFVSQNFKEDMDIAKT  234 (400)
T ss_pred             hhhheEEechhhHHHHHHHhh
Confidence            999999999999999976644

>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton

Probab=99.45  E-value=9.6e-14  Score=115.77  Aligned_cols=61  Identities=36%  Similarity=0.637  Sum_probs=55.7

Q ss_pred             CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc
Q psy2593          34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE   94 (139)
Q Consensus        34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE   94 (139)
                      +++.+.+.+|+++|.|.|||.+|.+|+|+|.+.|++++.++||||+||+++++..|++++|
T Consensus        55 ~~~~~~~~~p~~~g~i~~~~~~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e  115 (393)
T PF00022_consen   55 PRSNLELRSPIENGVIVDWDALEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAE  115 (393)
T ss_dssp             TGTGEEEEESEETTEESSHHHHHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHH
T ss_pred             chhheeeeeeccccccccccccccccccccccccccccccceeeeeccccCCchhhhhhhh
Confidence            4778999999999999999999999999998889999999999999999999999999999

These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=98.85  E-value=4.6e-09  Score=87.19  Aligned_cols=59  Identities=15%  Similarity=0.298  Sum_probs=53.4

Q ss_pred             CcceeeCcccCCeecCHHHHHHHHHHHHh---hhcCCCCCCcceEEecCCCCChhhhhhhcc
Q psy2593          36 SGCFYFYPVRHGLVEDWDLMERFFEQCIF---KYLRAEPEDHYFLLTEPPLNTPENREYTAE   94 (139)
Q Consensus        36 ~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~---~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE   94 (139)
                      +.+.+.+|+++|.|.|||.++.+|.+++.   ++++..+.++++++|.|+..+..+|+++.+
T Consensus        58 ~~~~~~~pi~~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~  119 (335)
T PRK13929         58 GKIVAVRPMKDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD  119 (335)
T ss_pred             CcEEEEecCCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH
Confidence            46888999999999999999999999996   367777777899999999999999999988

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=98.71  E-value=2.5e-08  Score=81.78  Aligned_cols=59  Identities=17%  Similarity=0.193  Sum_probs=49.6

Q ss_pred             CcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCC-CCcceEEecCCCCChhhhhhhcc
Q psy2593          36 SGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEP-EDHYFLLTEPPLNTPENREYTAE   94 (139)
Q Consensus        36 ~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p-~e~pvLlTEp~~n~~~~Rek~aE   94 (139)
                      ..+.+.+|+++|.|.|||.++.+|+|+|.+.+...+ ..+++++|.|+..+..+|+.+.+
T Consensus        62 ~~~~~~~pi~~G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~  121 (335)
T PRK13930         62 GNIEAIRPLKDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE  121 (335)
T ss_pred             CCeEEeecCCCCeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH
Confidence            468899999999999999999999999954334334 36789999999999999988877

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=98.68  E-value=3.2e-08  Score=81.67  Aligned_cols=59  Identities=17%  Similarity=0.284  Sum_probs=50.1

Q ss_pred             CcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCc-ceEEecCCCCChhhhhhhcc
Q psy2593          36 SGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDH-YFLLTEPPLNTPENREYTAE   94 (139)
Q Consensus        36 ~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~-pvLlTEp~~n~~~~Rek~aE   94 (139)
                      ..+.+.+||.+|+|.|||.++.+|+|+|.+.++.....+ ++++|.|+..+..+|+.+.+
T Consensus        60 ~~~~~~~pi~~G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~  119 (333)
T TIGR00904        60 GNIVAIRPMKDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKE  119 (333)
T ss_pred             CCEEEEecCCCCEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHH
Confidence            578999999999999999999999999977665433333 69999999999999988766

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=98.58  E-value=1.2e-07  Score=78.07  Aligned_cols=58  Identities=16%  Similarity=0.304  Sum_probs=44.8

Q ss_pred             CCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCc-ceEEecCCCCChhhhhhhcc
Q psy2593          35 SSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDH-YFLLTEPPLNTPENREYTAE   94 (139)
Q Consensus        35 r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~-pvLlTEp~~n~~~~Rek~aE   94 (139)
                      .+.+.+.+||++|.|.|||.++.+|.++|.+.++. +.++ .++++.|. ++...++++++
T Consensus        58 ~~~~~~~~pi~~G~i~d~~~~~~ll~~~~~~~~~~-~~~~~~~vi~vP~-~~~~~~r~~~~  116 (334)
T PRK13927         58 PGNIVAIRPMKDGVIADFDVTEKMLKYFIKKVHKN-FRPSPRVVICVPS-GITEVERRAVR  116 (334)
T ss_pred             CCCEEEEecCCCCeecCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEeCC-CCCHHHHHHHH
Confidence            36788999999999999999999999999777777 6666 46666664 45555555555

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=97.43  E-value=0.0003  Score=58.21  Aligned_cols=58  Identities=17%  Similarity=0.272  Sum_probs=44.4

Q ss_pred             CcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCC-CCCcc-eEEecCCCCChhhhhhhcc
Q psy2593          36 SGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAE-PEDHY-FLLTEPPLNTPENREYTAE   94 (139)
Q Consensus        36 ~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~-p~e~p-vLlTEp~~n~~~~Rek~aE   94 (139)
                      +.+.+.+|+.+|.|.|||.++.+|.|++ +++... +.++| +++|.|...+..+|+.+.+
T Consensus        57 ~~~~~~~pi~~G~i~d~~~~~~~l~~~~-~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~  116 (336)
T PRK13928         57 GNIVAIRPLRDGVIADYDVTEKMLKYFI-NKACGKRFFSKPRIMICIPTGITSVEKRAVRE  116 (336)
T ss_pred             CCEEEEccCCCCeEecHHHHHHHHHHHH-HHHhccCCCCCCeEEEEeCCCCCHHHHHHHHH
Confidence            4677889999999999999999999998 445433 55777 8889976665555554444

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=96.53  E-value=0.0049  Score=51.80  Aligned_cols=60  Identities=15%  Similarity=0.206  Sum_probs=44.9

Q ss_pred             CCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCC-CCcceEEecCCCCChhhhhhhcc
Q psy2593          35 SSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEP-EDHYFLLTEPPLNTPENREYTAE   94 (139)
Q Consensus        35 r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p-~e~pvLlTEp~~n~~~~Rek~aE   94 (139)
                      ...+.+.+|+++|+|.|.+.++.++.+.+.+-++-.. ....+++.-|.-.+...|+.+.+
T Consensus        54 p~~i~~~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~  114 (326)
T PF06723_consen   54 PDNIEVVRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALID  114 (326)
T ss_dssp             GTTEEEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHH
T ss_pred             CCccEEEccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHH
Confidence            3578999999999999999999999999965555323 44568889999888888888888

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>KOG0797|consensus

Probab=90.83  E-value=0.35  Score=43.39  Aligned_cols=50  Identities=14%  Similarity=0.228  Sum_probs=37.6

Q ss_pred             CCCcceeeCcccCCeec----------CHHHHHHHHHHHHhhhcCCCCC---CcceEEecCCC
Q psy2593          34 HSSGCFYFYPVRHGLVE----------DWDLMERFFEQCIFKYLRAEPE---DHYFLLTEPPL   83 (139)
Q Consensus        34 ~r~~l~l~~Pi~~G~V~----------nWD~~E~iw~~~f~~~L~v~p~---e~pvLlTEp~~   83 (139)
                      +-+.+.+.+||++|..-          --.+++.||+|++.+.|.|.+.   .+.+++.-|-.
T Consensus       175 ~i~~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~  237 (618)
T KOG0797|consen  175 KISPYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDT  237 (618)
T ss_pred             cCCcceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecch
Confidence            33468889999999521          2467899999999999999875   56777776644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
1k8k_A	418	Crystal Structure Of Arp23 COMPLEX Length = 418		8e-25
1k8k_A	418	Crystal Structure Of Arp23 COMPLEX Length = 418		7e-16
3dwl_A	427	Crystal Structure Of Fission Yeast Arp2/3 Complex L		9e-21
3dwl_A	427	Crystal Structure Of Fission Yeast Arp2/3 Complex L		4e-06
3b63_L	365	Actin Filament Model In The Extended Form Of Acroms		5e-09
1nlv_A	375	Crystal Structure Of Dictyostelium Discoideum Actin		5e-09
1d4x_A	375	Crystal Structure Of Caenorhabditis Elegans Mg-Atp		5e-09
4efh_A	375	Acanthamoeba Actin Complex With Spir Domain D Lengt		5e-09
3u4l_A	375	Cryocooled Bovine Profilin:actin Crystal Structure		5e-09
2oan_A	375	Structure Of Oxidized Beta-Actin Length = 375		5e-09
2hf3_A	374	Crystal Structure Of Monomeric Actin In The Adp Bou		5e-09
3eks_A	375	Crystal Structure Of Monomeric Actin Bound To Cytoc		5e-09
3byh_A	374	Model Of Actin-Fimbrin Abd2 Complex Length = 374		5e-09
3b63_C	365	Actin Filament Model In The Extended Form Of Acroms		7e-09
1yvn_A	375	The Yeast Actin Val 159 Asn Mutant Complex With Hum		7e-09
1yag_A	375	Structure Of The Yeast Actin-human Gelsolin Segment		7e-09
3b63_A	365	Actin Filament Model In The Extended Form Of Acroms		7e-09
3m6g_A	371	Crystal Structure Of Actin In Complex With Lobophor		1e-08
3b63_E	365	Actin Filament Model In The Extended Form Of Acroms		1e-08
1t44_A	370	Structural Basis Of Actin Sequestration By Thymosin		1e-08
2w49_D	372	Isometrically Contracting Insect Asynchronous Fligh		1e-08
1lcu_A	371	Polylysine Induces An Antiparallel Actin Dimer That		1e-08
1kxp_A	375	Crystal Structure Of Human Vitamin D-binding Protei		1e-08
1ijj_A	377	The X-Ray Crystal Structure Of The Complex Between		1e-08
4b1v_A	376	Structure Of The Phactr1 Rpel-N Domain Bound To G-A		1e-08
3mn5_A	359	Structures Of Actin-Bound Wh2 Domains Of Spire And		1e-08
3ci5_A	375	Complex Of Phosphorylated Dictyostelium Discoideum		5e-08
1c0g_A	375	Crystal Structure Of 1:1 Complex Between Gelsolin S		5e-08
3chw_A	375	Complex Of Dictyostelium Discoideum Actin With Prof		5e-08
1c0f_A	368	Crystal Structure Of Dictyostelium Caatp-Actin In C		5e-08
1dej_A	375	Crystal Structure Of A DictyosteliumTETRAHYMENA CHI		5e-08
2btf_A	375	The Structure Of Crystalline Profilin-Beta-Actin Le		5e-08
1atn_A	373	Atomic Structure Of The Actin:dnase I Complex Lengt		1e-07
3g37_O	376	Cryo-Em Structure Of Actin Filament In The Presence		1e-07
1qz5_A	375	Structure Of Rabbit Actin In Complex With Kabiramid		1e-07
2gwj_A	371	Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form		1e-07
1eqy_A	377	Complex Between Rabbit Muscle Alpha-Actin: Human Ge		1e-07
3w3d_A	374	Crystal Structure Of Smooth Muscle G Actin Dnase I		1e-07
3a5l_C	375	Crystal Structure Of A Dictyostelium P109a Mg2+-Act		3e-07
3a5m_C	375	Crystal Structure Of A Dictyostelium P109i Mg2+-Act		5e-07
3b63_F	357	Actin Filament Model In The Extended Form Of Acroms		2e-06
3b63_B	364	Actin Filament Model In The Extended Form Of Acroms		2e-06
3b63_D	357	Actin Filament Model In The Extended Form Of Acroms		2e-06

>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418

Iteration: 1
 Score =  108 bits (271), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 48/53 (90%), Positives = 51/53 (96%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct: 76  WPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128

>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418

Iteration: 1
 Score = 79.3 bits (194), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 41/46 (89%)
Query: 94  EREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRK 139
           +RE+GIPPEQSLETAKA+KERYSY+CPD+ KEF KYD D  KW+++
Sbjct: 210 DREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQ 255

>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427

Iteration: 1
 Score = 95.5 bits (236), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 43/60 (71%), Positives = 50/60 (83%)
Query: 35  SSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           S+G    YP+RHG +E+WD MERF++Q +FKYLR EPEDHYFLLTEPPLN PENRE TAE
Sbjct: 85  SAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAE 144

>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 30/38 (78%)
Query: 101 PEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMR 138
           P+ SL+TA+ IKE   Y+CPDI KEF+++D +P ++++
Sbjct: 230 PDSSLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLK 267

>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG+V +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 64  YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 112

>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG+V +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 69  YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117

>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG+V +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 69  YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117

>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG+V +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 69  YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117

>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG+V +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 69  YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117

>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG+V +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 69  YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117

>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG+V +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 68  YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 116

>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG+V +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 69  YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117

>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG+V +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 68  YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 116

>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG+V +WD ME+ +    +  LR  PE+H  LLTE P+N   NRE
Sbjct: 64  YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNRE 112

>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG+V +WD ME+ +    +  LR  PE+H  LLTE P+N   NRE
Sbjct: 69  YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNRE 117

>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG+V +WD ME+ +    +  LR  PE+H  LLTE P+N   NRE
Sbjct: 69  YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNRE 117

>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG+V +WD ME+ +    +  LR  PE+H  LLTE P+N   NRE
Sbjct: 64  YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKSNRE 112

>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 69  YPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE 117

>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 64  YPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE 112

>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 64  YPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE 112

>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 69  YPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE 117

>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 65  YPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE 113

>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 69  YPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE 117

>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 71  YPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE 119

>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 70  YPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE 118

>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+ HG++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 53  YPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE 101

>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+  G+V +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 69  YPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117

>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+  G+V +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 69  YPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117

>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+  G+V +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 69  YPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117

>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+  G+V +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 62  YPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 110

>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+  G+V +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 69  YPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117

>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+  G+V +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 69  YPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 117

>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+  G++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 70  YPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE 118

>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+  G++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 70  YPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE 118

>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+  G++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 69  YPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE 117

>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+  G++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 65  YPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE 113

>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+  G++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 71  YPIEXGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE 119

>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+  G++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 68  YPIEXGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANRE 116

>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+  G+V +WD ME+ +    +  LR  PE+H  LLTE  LN   NRE
Sbjct: 69  YPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAALNPKANRE 117

>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+  G+V +WD ME+ +    +  LR  PE+H  LLTE  LN   NRE
Sbjct: 69  YPIEXGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAILNPKANRE 117

>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+  G++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 65  YPI-EGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE 112

>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+  G++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 64  YPI-EGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE 111

>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENRE 90
           YP+  G++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE
Sbjct: 63  YPI-EGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANRE 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	2e-21
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	3e-10
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	3e-20
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	4e-08
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	6e-19
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	1e-06
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	2e-16
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	5e-05
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	6e-14

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418

 Score = 87.4 bits (217), Expect = 2e-21
 Identities = 48/53 (90%), Positives = 51/53 (96%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYTAE
Sbjct: 76  WPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418

 Score = 55.9 bits (135), Expect = 3e-10
 Identities = 33/46 (71%), Positives = 41/46 (89%)

Query: 94  EREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRK 139
           +RE+GIPPEQSLETAKA+KERYSY+CPD+ KEF KYD D  KW+++
Sbjct: 210 DREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQ 255

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427

 Score = 84.1 bits (208), Expect = 3e-20
 Identities = 41/53 (77%), Positives = 47/53 (88%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           YP+RHG +E+WD MERF++Q +FKYLR EPEDHYFLLTEPPLN PENRE TAE
Sbjct: 92  YPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAE 144

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427

 Score = 49.8 bits (119), Expect = 4e-08
 Identities = 18/39 (46%), Positives = 30/39 (76%)

Query: 101 PEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRK 139
           P+ SL+TA+ IKE   Y+CPDI KEF+++D +P ++++ 
Sbjct: 230 PDSSLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKY 268

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375

 Score = 80.1 bits (198), Expect = 6e-19
 Identities = 23/53 (43%), Positives = 32/53 (60%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           YP+ HG++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE   +
Sbjct: 69  YPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 121

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 10/40 (25%), Positives = 14/40 (35%)

Query: 94  EREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADP 133
           ER          E  + IKE+  Y+  D   E A   +  
Sbjct: 195 ERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSS 234

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFK-YLRAEPEDHYFLLTEPPLNTPENREYTAE 94
           YP+ +G+V +WD M+  ++       L  +  +   LLTEPP+N  +NRE   E
Sbjct: 72  YPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVE 125

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 94  EREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYDADPGKWMRK 139
            R          ET + IKE+  Y+  +I +E  K   +    +  
Sbjct: 199 LRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQ-KLALETTVLVES 243

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498

 Score = 66.6 bits (162), Expect = 6e-14
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 42  YPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHY-FLLTEPPLNTPENREYTAE 94
             + +GLV DWD  +  ++  +   L          LLTEP  N+ ENR+ + E
Sbjct: 82  PIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLE 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	99.81
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	99.79
4fo0_A	593	Actin-related protein 8; chromatin remodeling, nuc	99.74
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	99.72
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	99.71
4am6_A	655	Actin-like protein ARP8; nuclear protein, chromati	99.69
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	99.62
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	97.59
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	92.59

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.81  E-value=1.3e-20  Score=159.88  Aligned_cols=59  Identities=71%  Similarity=1.273  Sum_probs=57.2

Q ss_pred             CcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc
Q psy2593          36 SGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE   94 (139)
Q Consensus        36 ~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE   94 (139)
                      +.+.+++||++|+|+|||+||.+|+|+|.++|+++|.+||||||||+++|+.+|++|+|
T Consensus        86 ~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~~~~re~~~e  144 (427)
T 3dwl_A           86 AGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAE  144 (427)
T ss_dssp             HHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCCHHHHHHHHH
T ss_pred             cCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCCHHHHHHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1.2e-19  Score=156.98  Aligned_cols=61  Identities=28%  Similarity=0.333  Sum_probs=59.1

Q ss_pred             CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCc-ceEEecCCCCChhhhhhhcc
Q psy2593          34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDH-YFLLTEPPLNTPENREYTAE   94 (139)
Q Consensus        34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~-pvLlTEp~~n~~~~Rek~aE   94 (139)
                      .|+.+.+++||++|+|+|||+||.||+|+|.+.|++.|.++ |||||||+++|+.+|++|+|
T Consensus        74 ~r~~l~l~~Pi~~GvI~dwd~~E~iw~~~f~~~L~v~p~~~~pvlltep~~n~~~~Re~~~e  135 (498)
T 3qb0_A           74 PRKDYELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLE  135 (498)
T ss_dssp             CCTTEEEEESEETTEESCHHHHHHHHHHHHHHTSCCSCCTTCCEEEEECTTCCHHHHHHHHH
T ss_pred             CcCceEEeccCcCCEEccHHHHHHHHHHHHHhhhCCCcccCCceEEEeCCCCcHHHHHHHHH
Confidence            57899999999999999999999999999988999999999 99999999999999999999

>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}

Probab=99.74  E-value=8.7e-19  Score=151.48  Aligned_cols=61  Identities=20%  Similarity=0.268  Sum_probs=57.5

Q ss_pred             CCCcceeeCcccCC-----------eecCHHHHHHHHHHHHhhhcCCCCCC---cceEEecCCCCChhhhhhhcc
Q psy2593          34 HSSGCFYFYPVRHG-----------LVEDWDLMERFFEQCIFKYLRAEPED---HYFLLTEPPLNTPENREYTAE   94 (139)
Q Consensus        34 ~r~~l~l~~Pi~~G-----------~V~nWD~~E~iw~~~f~~~L~v~p~e---~pvLlTEp~~n~~~~Rek~aE   94 (139)
                      +++.+.+++||++|           +|.|||+||.||+|+|.++|+|.|++   ||||||||+++++..|++|+|
T Consensus       145 ~~~~~~l~~Pi~~G~~n~~~~~~~s~~~~wdd~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~e  219 (593)
T 4fo0_A          145 PLDCYNIHWPIRRGQLNIHPGPGGSLTAVLADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVN  219 (593)
T ss_dssp             TTSSEEEECSEETTEECCCSSTTCSHHHHHHHHHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHH
T ss_pred             CcccceEecCcccCccccccCCccchhcCHHHHHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHH
Confidence            46789999999999           68999999999999999999999876   999999999999999999999

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*

Probab=99.72  E-value=1.1e-18  Score=145.29  Aligned_cols=95  Identities=31%  Similarity=0.492  Sum_probs=28.0

Q ss_pred             CCcceeeCcccCCeecCHHHHHHHHHHHH-hhhcCCCCCCcceEEecCCCCChhhhhhhcc-------------------
Q psy2593          35 SSGCFYFYPVRHGLVEDWDLMERFFEQCI-FKYLRAEPEDHYFLLTEPPLNTPENREYTAE-------------------   94 (139)
Q Consensus        35 r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f-~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE-------------------   94 (139)
                      ++.+.+.+|+++|+|+|||.+|.+|+|+| .+.|+++|.++|||+|+|+++++.+|++++|                   
T Consensus        65 ~~~~~~~~Pi~~G~i~dwd~~e~i~~~~~~~~~L~~~~~~~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~  144 (394)
T 1k8k_B           65 RSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVL  144 (394)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCceeeccccCCEEecHHHHHHHHHHHhcccccCcCCCCCcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHH
Confidence            56789999999999999999999999999 8899999999999999999999999999999                   


Q ss_pred             -------------------------------------------------------cCcccCCcChHHHHHHhhhhccccc
Q psy2593          95 -------------------------------------------------------REIGIPPEQSLETAKAIKERYSYIC  119 (139)
Q Consensus        95 -------------------------------------------------------~G~~f~t~~~~~~v~~IKE~~CyVa  119 (139)
                                                                             +|+.+.+..+.+++++|||++|||+
T Consensus       145 a~~a~g~~~~lVVDiG~g~T~v~pv~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~ae~iK~~~~~v~  224 (394)
T 1k8k_B          145 TLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVG  224 (394)
T ss_dssp             ---------CCEEEECSSCEEEECEETTEECSTTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCC
T ss_pred             HHHhCCCceEEEEEcCCCceEeeeeECCEEcccceEEeeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhheeEe
Confidence                                                                   2344555578999999999999999


Q ss_pred             cCHHHHHHhh
Q psy2593         120 PDIAKEFAKY  129 (139)
Q Consensus       120 ~Dy~~E~~~~  129 (139)
                      .|+.+|++..
T Consensus       225 ~d~~~~~~~~  234 (394)
T 1k8k_B          225 YNIEQEQKLA  234 (394)
T ss_dssp             SSHHHHHHHH
T ss_pred             cCHHHHHHhh
Confidence            9999988543

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=99.71  E-value=1.3e-17  Score=137.55  Aligned_cols=95  Identities=34%  Similarity=0.593  Sum_probs=83.5

Q ss_pred             CCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc--------------------
Q psy2593          35 SSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE--------------------   94 (139)
Q Consensus        35 r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE--------------------   94 (139)
                      ++.+.+.+||++|+|.|||.+|.+|+|+|.+.|++++.++|+++|+|++++..+|++++|                    
T Consensus        62 ~~~~~~~~Pi~~G~i~d~d~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aa  141 (375)
T 2fxu_A           62 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLS  141 (375)
T ss_dssp             TTSEEEECSEETTEECCHHHHHHHHHHHHHTTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHH
T ss_pred             CcccceeccccCCcccCHHHHHHHHHHHHHHhcCCCCcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchhee
Confidence            456899999999999999999999999998889999999999999999999999999998                    


Q ss_pred             ------------------------------------------------------cCcccCCcChHHHHHHhhhhcccccc
Q psy2593          95 ------------------------------------------------------REIGIPPEQSLETAKAIKERYSYICP  120 (139)
Q Consensus        95 ------------------------------------------------------~G~~f~t~~~~~~v~~IKE~~CyVa~  120 (139)
                                                                            +|+.+.+..+.+++++||+++|||+.
T Consensus       142 a~a~g~~~~lVvDiG~gtt~v~~v~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~  221 (375)
T 2fxu_A          142 LYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVAL  221 (375)
T ss_dssp             HHHTTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCS
T ss_pred             eeecCCCeEEEEEcCCCceEEeEeECCEEeccceEEeccCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcc
Confidence                                                                  12333334578999999999999999


Q ss_pred             CHHHHHHhh
Q psy2593         121 DIAKEFAKY  129 (139)
Q Consensus       121 Dy~~E~~~~  129 (139)
                      |+.+|++..
T Consensus       222 ~~~~e~~~~  230 (375)
T 2fxu_A          222 DFENEMATA  230 (375)
T ss_dssp             SHHHHHHHH
T ss_pred             cHHHHHHhh
Confidence            999997643

>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*

Probab=99.69  E-value=1.3e-17  Score=147.98  Aligned_cols=79  Identities=15%  Similarity=0.127  Sum_probs=65.1

Q ss_pred             cccccccCCCCCCccccCCC---CCCcceeeCcccCCeec----C-------HHHHHHHHHHHHhh-hcCCCCC---Ccc
Q psy2593          14 HRRENIDRDCSGQWRWCHPC---HSSGCFYFYPVRHGLVE----D-------WDLMERFFEQCIFK-YLRAEPE---DHY   75 (139)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~---~r~~l~l~~Pi~~G~V~----n-------WD~~E~iw~~~f~~-~L~v~p~---e~p   75 (139)
                      +|.+-++.+  ...+++.+.   .++.+.+++||++|+|.    |       ||+||.||+|+|.+ +|+++|.   ++|
T Consensus       146 ~~~~W~~~~--~d~~VGdEA~~~~r~~l~l~~PI~~GvI~~~s~Dy~s~q~~WD~mE~Iw~y~f~~~~L~V~p~~~~e~p  223 (655)
T 4am6_A          146 SPIEWIFDD--SKLYYGSDALRCVDEKFVIRKPFRGGSFNVKSPYYKSLAELISDVTKLLEHALNSETLNVKPTKFNQYK  223 (655)
T ss_dssp             CSCCCBCCT--TSCEEHHHHHTBCTTTEEEECSEETTEECTTCSSCSSHHHHHHHHHHHHHHHHBSSSCBCCGGGGGGCE
T ss_pred             cccccccCC--CCEEEehHHhhCCccCeEEeccccCCEecccCCccccccccHHHHHHHHHHHhccccccccccccCCCc
Confidence            455555542  133344332   56899999999999998    8       99999999999974 8999996   899


Q ss_pred             eEEecCCCCChhhhhhhcc
Q psy2593          76 FLLTEPPLNTPENREYTAE   94 (139)
Q Consensus        76 vLlTEp~~n~~~~Rek~aE   94 (139)
                      ||||||+++|+.+|++|+|
T Consensus       224 VLLTEPplnp~~~REkm~E  242 (655)
T 4am6_A          224 VVLVIPDIFKKSHVETFIR  242 (655)
T ss_dssp             EEEEECTTCCHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            9999999999999999999

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A

Probab=99.62  E-value=7.9e-16  Score=128.01  Aligned_cols=58  Identities=83%  Similarity=1.380  Sum_probs=55.8

Q ss_pred             cceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc
Q psy2593          37 GCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE   94 (139)
Q Consensus        37 ~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE   94 (139)
                      .+.+++||++|+|.|||.+|.+|+|+|.+.|+++|+++|+++|+|++++..+|++|.|
T Consensus        71 ~~~~~~pi~~G~i~d~d~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e  128 (418)
T 1k8k_A           71 TYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE  128 (418)
T ss_dssp             TSEEECCEETTEESCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHH
T ss_pred             CCEEeccccCCEECCHHHHHHHHHHHHHhccCCCCCCCcEEEEeCCCCCHHHHHHHHH
Confidence            5999999999999999999999999998889999999999999999999999999988

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=97.59  E-value=9.3e-05  Score=59.26  Aligned_cols=58  Identities=16%  Similarity=0.098  Sum_probs=48.4

Q ss_pred             cceeeCcccCCeecCHHHHHHHHHHHHhhhcCCC-CCCcceEEecCCCCChhhhhhhcc
Q psy2593          37 GCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAE-PEDHYFLLTEPPLNTPENREYTAE   94 (139)
Q Consensus        37 ~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~-p~e~pvLlTEp~~n~~~~Rek~aE   94 (139)
                      .+.+.+|+.+|.|.||+.++.+|.++|..-.... +.+.++++|.|+..+..+|+.+.+
T Consensus        58 ~~~~~~p~~~g~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~  116 (344)
T 1jce_A           58 TIKAIRPMRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILD  116 (344)
T ss_dssp             TEEEECCEETTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred             CeEEEecCCCCeeCChHHHHHHHHHHHHHHhhccccCCCeEEEEECCCCCHHHHHHHHH
Confidence            5667899999999999999999999995322222 446899999999999999998888

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=92.59  E-value=0.13  Score=39.25  Aligned_cols=56  Identities=21%  Similarity=0.084  Sum_probs=37.0

Q ss_pred             eeeCcccCCeecCHHHHHHHHHHHHhhhcCCCC-CCcceEEecCCCCChhhhhhhcc
Q psy2593          39 FYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEP-EDHYFLLTEPPLNTPENREYTAE   94 (139)
Q Consensus        39 ~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p-~e~pvLlTEp~~n~~~~Rek~aE   94 (139)
                      ....|+.+|.|.|||.++.+|.+++........ ....++++.|.......|+.+.+
T Consensus        57 ~~~~~l~~g~i~d~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~  113 (272)
T 3h1q_A           57 KWASVVKDGLVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGH  113 (272)
T ss_dssp             EECCCCBTTBCTTHHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHH
T ss_pred             ecccccCCCEEEcHHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHH
Confidence            345799999999999999999999854332222 23456777777665555554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1k8ka1	158	c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {	7e-17
d2fxua1	140	c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId:	9e-15

>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.1 bits (171), Expect = 7e-17
 Identities = 48/62 (77%), Positives = 51/62 (82%)

Query: 33  CHSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYT 92
                    +P+RHG+VEDWDLMERF EQ IFKYLRAEPEDHYFLLTEPPLNTPENREYT
Sbjct: 65  IEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYT 124

Query: 93  AE 94
           AE
Sbjct: 125 AE 126

>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.3 bits (156), Expect = 9e-15
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 34  HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTA 93
                   YP+ HG++ +WD ME+ +    +  LR  PE+H  LLTE PLN   NRE   
Sbjct: 55  KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 114

Query: 94  E 94
           +
Sbjct: 115 Q 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1k8ka1	158	Actin-related protein 3, Arp3 {Cow (Bos taurus) [T	99.63
d2fxua1	140	Actin {Cow (Bos taurus) [TaxId: 9913]}	99.58
d1k8ka2	258	Actin-related protein 3, Arp3 {Cow (Bos taurus) [T	95.32
d1k8kb1	190	Actin-related protein 2, Arp2 {Cow (Bos taurus) [T	92.98
d2fxua2	225	Actin {Cow (Bos taurus) [TaxId: 9913]}	91.69

>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.63  E-value=1.5e-16  Score=116.45  Aligned_cols=61  Identities=79%  Similarity=1.317  Sum_probs=58.8

Q ss_pred             CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc
Q psy2593          34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE   94 (139)
Q Consensus        34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE   94 (139)
                      .++.+.+.+||++|+|+|||.+|.+|+++|.+.|+++|++||||+|||+++++..|++++|
T Consensus        66 ~~~~~~~~~pi~~G~i~dwd~~e~l~~~~~~~~l~v~~~~~pvlltEp~~~~~~~Re~~~E  126 (158)
T d1k8ka1          66 EKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE  126 (158)
T ss_dssp             SCTTSEEECCEETTEESCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHH
T ss_pred             hCCCccccccccCCeEecHHHHHHHHHHHHHHhcccCCCCCceeeeecCCCCHHHHHHHHH
Confidence            4678999999999999999999999999998999999999999999999999999999999

>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=6.7e-16  Score=110.21  Aligned_cols=61  Identities=38%  Similarity=0.703  Sum_probs=58.2

Q ss_pred             CCCcceeeCcccCCeecCHHHHHHHHHHHHhhhcCCCCCCcceEEecCCCCChhhhhhhcc
Q psy2593          34 HSSGCFYFYPVRHGLVEDWDLMERFFEQCIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE   94 (139)
Q Consensus        34 ~r~~l~l~~Pi~~G~V~nWD~~E~iw~~~f~~~L~v~p~e~pvLlTEp~~n~~~~Rek~aE   94 (139)
                      .+..+.+++|+++|+|+|||.++.+|+|+|.+.|+++|+++|||||||++++++.|++++|
T Consensus        55 ~~~~~~~~~p~~~g~v~dwd~~e~~~~~~~~~~l~~~~~~~pvlltE~~~~~~~~r~~~~E  115 (140)
T d2fxua1          55 KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ  115 (140)
T ss_dssp             HTTSEEEECSEETTEECCHHHHHHHHHHHHHTTSCCCGGGSCEEEEECTTCCHHHHHHHHH
T ss_pred             ccccccccCcCcCCcccCHHHHHHHHHHhhhhhcccCCCCCcceeeccCCCCHHHHHHHHH
Confidence            3566889999999999999999999999999899999999999999999999999999999

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.32  E-value=0.0031  Score=47.16  Aligned_cols=38  Identities=79%  Similarity=1.378  Sum_probs=31.1

Q ss_pred             cccCcccCCcChHHHHHHhhhhccccccCHHHHHHhhc
Q psy2593          93 AEREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKYD  130 (139)
Q Consensus        93 aE~G~~f~t~~~~~~v~~IKE~~CyVa~Dy~~E~~~~~  130 (139)
                      .++|+.+.+..+.++++.|||++|||+.|+.+|++...
T Consensus        49 ~~~~~~~~~~~~~~~~~~~ke~~~~v~~d~~~e~~~~~   86 (258)
T d1k8ka2          49 RDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYD   86 (258)
T ss_dssp             HTTCCCCCGGGHHHHHHHHHHHHCCCCSCHHHHHHHHH
T ss_pred             HHcCCCCCcHHHHHHHHhHHhhhcccccchHHHHHhhc
Confidence            34566666677889999999999999999999986543

>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.98  E-value=0.031  Score=39.60  Aligned_cols=36  Identities=25%  Similarity=0.316  Sum_probs=30.2

Q ss_pred             ccCcccCCcChHHHHHHhhhhccccccCHHHHHHhh
Q psy2593          94 EREIGIPPEQSLETAKAIKERYSYICPDIAKEFAKY  129 (139)
Q Consensus        94 E~G~~f~t~~~~~~v~~IKE~~CyVa~Dy~~E~~~~  129 (139)
                      +.|+.+.+..+..++++||+++|||+.++.+|+...
T Consensus        46 ~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~e~~~~   81 (190)
T d1k8kb1          46 LRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLA   81 (190)
T ss_dssp             HTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHHH
T ss_pred             hcCCcccchHHHHHHHHHHhhhhhhcccHHHHHHhh
Confidence            356666677788999999999999999999997554

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.69  E-value=0.033  Score=40.29  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=28.4

Q ss_pred             cCcccCCcChHHHHHHhhhhccccccCHHHHHHhh
Q psy2593          95 REIGIPPEQSLETAKAIKERYSYICPDIAKEFAKY  129 (139)
Q Consensus        95 ~G~~f~t~~~~~~v~~IKE~~CyVa~Dy~~E~~~~  129 (139)
                      .|+.+....+.++++++||.+||++.|+..|....
T Consensus        50 ~~~~~~~~~~~~~~~~~ke~~~~~~~d~~~e~~~~   84 (225)
T d2fxua2          50 RGYSFVTTAEREIVRDIKEKLCYVALDFENEMATA   84 (225)
T ss_dssp             HTCCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHH
T ss_pred             ccCCcCCHHHHHHHHHHHHHHhhcccchhHHHhhc
Confidence            44555556678899999999999999999998654