Psyllid ID: psy2594

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
MPPLVATRLKWLLNCPDEAECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNPVFGTMT
cccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccEEEEccEEccccccHHHHHccHHHHHHccccEEEEcccccccc
ccHHHHHHHHHHHccccccccccccHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccEEEEEccHHHcccHHHHHHEccHHHHHHHcccHEEccccccccc
MPPLVATRLKWLlncpdeaectpnskhrakktWLQRDIKRVVDARLKLSEtlsggyikpkpidVQVITHHMQRYAVWFggsmlastpefyevchtkaayeeygpsicrhnpvfgtmt
MPPLVATRLKWLlncpdeaectpnskhrakktwlqrdiKRVVDARLKLsetlsggyikpkpIDVQVITHHMQRYAVWFGGSMLASTPEFYEVCHTKAAYeeygpsicrhnpvfgtmt
MPPLVATRLKWLLNCPDEAECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNPVFGTMT
****VATRLKWLLNCPDEAEC*******AKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNPVF****
***LVATRLKWLLNCPDEAECTPNSKHRAKKTWLQRDIKRVVDARLK**************IDVQVITHHMQRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNPVFGTM*
MPPLVATRLKWLLNCPDEA*************WLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNPVFGTMT
MPPLVATRLKWLLNCPDEAECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNPVF****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
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MPPLVATRLKWLLNCPDEAECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNPVFGTMT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query117 2.2.26 [Sep-21-2011]
P32392418 Actin-related protein 3 O yes N/A 0.717 0.200 0.904 8e-41
Q9P1U1418 Actin-related protein 3B yes N/A 0.717 0.200 0.845 3e-39
Q90WD0418 Actin-related protein 3 O no N/A 0.717 0.200 0.869 3e-39
Q4V7C7418 Actin-related protein 3 O no N/A 0.717 0.200 0.869 3e-39
Q99JY9418 Actin-related protein 3 O yes N/A 0.717 0.200 0.869 3e-39
Q5R8R1418 Actin-related protein 3 O no N/A 0.717 0.200 0.869 4e-39
P61158418 Actin-related protein 3 O no N/A 0.717 0.200 0.869 4e-39
P61157418 Actin-related protein 3 O yes N/A 0.717 0.200 0.869 4e-39
Q641P0418 Actin-related protein 3B no N/A 0.717 0.200 0.845 4e-39
O73723418 Actin-related protein 3 O N/A N/A 0.717 0.200 0.857 7e-39
>sp|P32392|ARP3_DROME Actin-related protein 3 OS=Drosophila melanogaster GN=Arp66B PE=2 SV=3 Back     alignment and function desciption
 Score =  165 bits (417), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 76/84 (90%), Positives = 79/84 (94%)

Query: 34  LQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVC 93
           LQRDIKR VD RL++SE LS G IKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFY+VC
Sbjct: 335 LQRDIKRSVDTRLRISENLSEGRIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVC 394

Query: 94  HTKAAYEEYGPSICRHNPVFGTMT 117
           HTKAAYEEYGPSICRHNPVFGTMT
Sbjct: 395 HTKAAYEEYGPSICRHNPVFGTMT 418
Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament.
Drosophila melanogaster (taxid: 7227)
>sp|Q9P1U1|ARP3B_HUMAN Actin-related protein 3B OS=Homo sapiens GN=ACTR3B PE=2 SV=1 Back     alignment and function description
>sp|Q90WD0|ARP3_CHICK Actin-related protein 3 OS=Gallus gallus GN=ACTR3 PE=2 SV=1 Back     alignment and function description
>sp|Q4V7C7|ARP3_RAT Actin-related protein 3 OS=Rattus norvegicus GN=Actr3 PE=1 SV=1 Back     alignment and function description
>sp|Q99JY9|ARP3_MOUSE Actin-related protein 3 OS=Mus musculus GN=Actr3 PE=1 SV=3 Back     alignment and function description
>sp|Q5R8R1|ARP3_PONAB Actin-related protein 3 OS=Pongo abelii GN=ACTR3 PE=2 SV=3 Back     alignment and function description
>sp|P61158|ARP3_HUMAN Actin-related protein 3 OS=Homo sapiens GN=ACTR3 PE=1 SV=3 Back     alignment and function description
>sp|P61157|ARP3_BOVIN Actin-related protein 3 OS=Bos taurus GN=ACTR3 PE=1 SV=3 Back     alignment and function description
>sp|Q641P0|ARP3B_MOUSE Actin-related protein 3B OS=Mus musculus GN=Actr3b PE=2 SV=1 Back     alignment and function description
>sp|O73723|ARP3_TAKRU Actin-related protein 3 OS=Takifugu rubripes GN=actr3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query117
388523591 416 actin, partial [Cryptocercus punctulatus 0.717 0.201 0.940 3e-41
91078924 418 PREDICTED: similar to actin [Tribolium c 0.717 0.200 0.904 9e-40
19558861592 GD13022 [Drosophila simulans] gi|1941960 0.717 0.913 0.904 3e-39
558568 418 actin related protein [Drosophila melano 0.717 0.200 0.904 3e-39
195376731 418 GJ13271 [Drosophila virilis] gi|19415430 0.717 0.200 0.904 3e-39
125980470 418 GA20439 [Drosophila pseudoobscura pseudo 0.717 0.200 0.904 3e-39
17737543 418 Actin-related protein 3, isoform A [Dros 0.717 0.200 0.904 3e-39
194865325 418 GG14922 [Drosophila erecta] gi|195492735 0.717 0.200 0.904 3e-39
194750526 418 GF10484 [Drosophila ananassae] gi|190624 0.717 0.200 0.904 3e-39
321477728 420 hypothetical protein DAPPUDRAFT_304740 [ 0.717 0.2 0.880 5e-39
>gi|388523591|gb|AFK49794.1| actin, partial [Cryptocercus punctulatus] Back     alignment and taxonomy information
 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/84 (94%), Positives = 82/84 (97%)

Query: 34  LQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVC 93
           LQRDIKR VDARL+LSETLSGG IKPKPIDVQVI+HHMQRYAVWFGGSMLASTPEFY+VC
Sbjct: 333 LQRDIKRTVDARLRLSETLSGGRIKPKPIDVQVISHHMQRYAVWFGGSMLASTPEFYQVC 392

Query: 94  HTKAAYEEYGPSICRHNPVFGTMT 117
           HTKAAYEEYGPSICRHNPVFGTMT
Sbjct: 393 HTKAAYEEYGPSICRHNPVFGTMT 416

Source: Cryptocercus punctulatus

Species: Cryptocercus punctulatus

Genus: Cryptocercus

Family: Cryptocercidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91078924|ref|XP_973781.1| PREDICTED: similar to actin [Tribolium castaneum] gi|270003694|gb|EFA00142.1| hypothetical protein TcasGA2_TC002963 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|195588615|ref|XP_002084053.1| GD13022 [Drosophila simulans] gi|194196062|gb|EDX09638.1| GD13022 [Drosophila simulans] Back     alignment and taxonomy information
>gi|558568|emb|CAA50674.1| actin related protein [Drosophila melanogaster] gi|1096138|prf||2111232A actin-related protein Back     alignment and taxonomy information
>gi|195376731|ref|XP_002047146.1| GJ13271 [Drosophila virilis] gi|194154304|gb|EDW69488.1| GJ13271 [Drosophila virilis] Back     alignment and taxonomy information
>gi|125980470|ref|XP_001354259.1| GA20439 [Drosophila pseudoobscura pseudoobscura] gi|195167743|ref|XP_002024692.1| GL22484 [Drosophila persimilis] gi|54642565|gb|EAL31312.1| GA20439 [Drosophila pseudoobscura pseudoobscura] gi|194108097|gb|EDW30140.1| GL22484 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|17737543|ref|NP_523968.1| Actin-related protein 3, isoform A [Drosophila melanogaster] gi|442630926|ref|NP_001261559.1| Actin-related protein 3, isoform B [Drosophila melanogaster] gi|195325883|ref|XP_002029660.1| GM24973 [Drosophila sechellia] gi|30581042|sp|P32392.3|ARP3_DROME RecName: Full=Actin-related protein 3; AltName: Full=Actin-2; AltName: Full=Actin-like protein 3; AltName: Full=Actin-like protein 66B gi|7295163|gb|AAF50488.1| Actin-related protein 3, isoform A [Drosophila melanogaster] gi|15292029|gb|AAK93283.1| LD35711p [Drosophila melanogaster] gi|194118603|gb|EDW40646.1| GM24973 [Drosophila sechellia] gi|220946032|gb|ACL85559.1| Arp66B-PA [synthetic construct] gi|220960384|gb|ACL92728.1| Arp66B-PA [synthetic construct] gi|440215466|gb|AGB94254.1| Actin-related protein 3, isoform B [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|194865325|ref|XP_001971373.1| GG14922 [Drosophila erecta] gi|195492735|ref|XP_002094118.1| GE20375 [Drosophila yakuba] gi|190653156|gb|EDV50399.1| GG14922 [Drosophila erecta] gi|194180219|gb|EDW93830.1| GE20375 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|194750526|ref|XP_001957581.1| GF10484 [Drosophila ananassae] gi|190624863|gb|EDV40387.1| GF10484 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|321477728|gb|EFX88686.1| hypothetical protein DAPPUDRAFT_304740 [Daphnia pulex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query117
FB|FBgn0262716418 Arp3 "Actin-related protein 3" 0.717 0.200 0.904 1.6e-38
UNIPROTKB|F1SSP6407 ACTR3B "Uncharacterized protei 0.717 0.206 0.869 1.5e-37
UNIPROTKB|F1NW48419 ACTR3B "Uncharacterized protei 0.717 0.200 0.857 3e-37
UNIPROTKB|F1P685330 ACTR3B "Uncharacterized protei 0.717 0.254 0.857 3e-37
UNIPROTKB|J9NWY2418 ACTR3B "Uncharacterized protei 0.717 0.200 0.857 3e-37
RGD|1565759418 Actr3b "ARP3 actin-related pro 0.717 0.200 0.857 3e-37
UNIPROTKB|Q9P1U1418 ACTR3B "Actin-related protein 0.717 0.200 0.845 3.9e-37
MGI|MGI:2661120418 Actr3b "ARP3 actin-related pro 0.717 0.200 0.845 3.9e-37
UNIPROTKB|Q90WD0418 ACTR3 "Actin-related protein 3 0.717 0.200 0.869 4.9e-37
UNIPROTKB|F1N049384 ACTR3 "Actin-related protein 3 0.717 0.218 0.869 4.9e-37
FB|FBgn0262716 Arp3 "Actin-related protein 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 76/84 (90%), Positives = 79/84 (94%)

Query:    34 LQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVC 93
             LQRDIKR VD RL++SE LS G IKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFY+VC
Sbjct:   335 LQRDIKRSVDTRLRISENLSEGRIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVC 394

Query:    94 HTKAAYEEYGPSICRHNPVFGTMT 117
             HTKAAYEEYGPSICRHNPVFGTMT
Sbjct:   395 HTKAAYEEYGPSICRHNPVFGTMT 418
GO:0005884 "actin filament" evidence=ISS
GO:0003779 "actin binding" evidence=ISS
GO:0007010 "cytoskeleton organization" evidence=ISS
GO:0005885 "Arp2/3 protein complex" evidence=ISS;NAS
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=ISS
GO:0007413 "axonal fasciculation" evidence=IMP
GO:0030037 "actin filament reorganization involved in cell cycle" evidence=IPI
GO:0030589 "pseudocleavage involved in syncytial blastoderm formation" evidence=IPI
GO:0015629 "actin cytoskeleton" evidence=NAS
GO:0008064 "regulation of actin polymerization or depolymerization" evidence=NAS
GO:0005524 "ATP binding" evidence=IEA
GO:0006911 "phagocytosis, engulfment" evidence=IMP
GO:0030027 "lamellipodium" evidence=IDA
GO:0007520 "myoblast fusion" evidence=IGI;IMP
GO:0030036 "actin cytoskeleton organization" evidence=IMP
GO:0030713 "ovarian follicle cell stalk formation" evidence=IMP
GO:0006886 "intracellular protein transport" evidence=IMP
GO:0022416 "chaeta development" evidence=IMP
GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP
GO:0000902 "cell morphogenesis" evidence=IMP
GO:0051491 "positive regulation of filopodium assembly" evidence=IMP
GO:0010592 "positive regulation of lamellipodium assembly" evidence=IMP
UNIPROTKB|F1SSP6 ACTR3B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NW48 ACTR3B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P685 ACTR3B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NWY2 ACTR3B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1565759 Actr3b "ARP3 actin-related protein 3 homolog B (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9P1U1 ACTR3B "Actin-related protein 3B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2661120 Actr3b "ARP3 actin-related protein 3B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q90WD0 ACTR3 "Actin-related protein 3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N049 ACTR3 "Actin-related protein 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P32392ARP3_DROMENo assigned EC number0.90470.71790.2009yesN/A
P32390ARP3_SCHPONo assigned EC number0.60970.68370.1873yesN/A
Q99JY9ARP3_MOUSENo assigned EC number0.86900.71790.2009yesN/A
P42528ARP3_DICDINo assigned EC number0.71420.71790.2009yesN/A
P61157ARP3_BOVINNo assigned EC number0.86900.71790.2009yesN/A
Q6K908ARP3_ORYSJNo assigned EC number0.66260.70940.1939yesN/A
Q9P1U1ARP3B_HUMANNo assigned EC number0.84520.71790.2009yesN/A
P47117ARP3_YEASTNo assigned EC number0.56250.66660.1737yesN/A
Q9SAF1ARP3_ARATHNo assigned EC number0.57830.70940.1943yesN/A
Q9N4I0ARP3_CAEELNo assigned EC number0.77380.71790.1976yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query117
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 8e-46
smart00268373 smart00268, ACTIN, Actin 2e-17
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 6e-11
pfam00022367 pfam00022, Actin, Actin 5e-09
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 2e-08
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 3e-07
PTZ00466380 PTZ00466, PTZ00466, actin-like protein; Provisiona 5e-05
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information 
 Score =  152 bits (385), Expect = 8e-46
 Identities = 56/83 (67%), Positives = 70/83 (84%)

Query: 34  LQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVC 93
           LQRD+++ VD RLK +E LSGG +KP PIDV V++H  QRYAVW+GGSMLAS+PEF +VC
Sbjct: 332 LQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVC 391

Query: 94  HTKAAYEEYGPSICRHNPVFGTM 116
           HTKA Y+EYGPSICR+N VF ++
Sbjct: 392 HTKAEYDEYGPSICRYNNVFHSV 414

Length = 414
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 117
PTZ00452375 actin; Provisional 99.97
PTZ00280414 Actin-related protein 3; Provisional 99.97
PTZ00466380 actin-like protein; Provisional 99.96
PTZ00281376 actin; Provisional 99.96
PTZ00004378 actin-2; Provisional 99.96
KOG0676|consensus372 99.95
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 99.95
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 99.94
KOG0679|consensus426 99.93
COG5277444 Actin and related proteins [Cytoskeleton] 99.91
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 99.91
KOG0680|consensus400 99.91
KOG0678|consensus415 99.85
KOG0677|consensus389 99.79
KOG0681|consensus645 99.68
KOG0797|consensus618 99.22
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 97.85
PRK13930335 rod shape-determining protein MreB; Provisional 97.67
PRK13927334 rod shape-determining protein MreB; Provisional 97.67
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 97.56
PRK13929335 rod-share determining protein MreBH; Provisional 97.53
PRK13928336 rod shape-determining protein Mbl; Provisional 97.24
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 96.52
PRK15080267 ethanolamine utilization protein EutJ; Provisional 96.16
CHL00094 621 dnaK heat shock protein 70 93.79
COG1077342 MreB Actin-like ATPase involved in cell morphogene 93.63
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 93.39
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 93.15
TIGR02261262 benz_CoA_red_D benzoyl-CoA reductase, bcr type, su 92.46
PRK13411 653 molecular chaperone DnaK; Provisional 91.11
PRK09472420 ftsA cell division protein FtsA; Reviewed 90.76
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 90.6
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 90.56
PRK05183 616 hscA chaperone protein HscA; Provisional 90.39
PLN03184 673 chloroplast Hsp70; Provisional 90.22
PTZ00009 653 heat shock 70 kDa protein; Provisional 90.09
PTZ00400 663 DnaK-type molecular chaperone; Provisional 90.05
PRK01433 595 hscA chaperone protein HscA; Provisional 89.86
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 88.39
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 87.72
PRK13410 668 molecular chaperone DnaK; Provisional 87.22
TIGR00241248 CoA_E_activ CoA-substrate-specific enzyme activase 86.96
PF01869271 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In 86.65
TIGR02259432 benz_CoA_red_A benzoyl-CoA reductase, bcr type, su 85.24
COG4820277 EutJ Ethanolamine utilization protein, possible ch 83.81
TIGR03192293 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s 82.97
PRK11678450 putative chaperone; Provisional 82.34
TIGR03286404 methan_mark_15 putative methanogenesis marker prot 82.15
>PTZ00452 actin; Provisional Back     alignment and domain information 
Probab=99.97  E-value=8.8e-31  Score=205.67  Aligned_cols=94  Identities=18%  Similarity=0.334  Sum_probs=88.1

Q ss_pred             CCHHHHHHHHHhcCCCce---------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594           2 PPLVATRLKWLLNCPDEA---------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ   72 (117)
Q Consensus         2 ~gl~~~i~~si~~cp~d~---------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~   72 (117)
                      +||+++|++||++||+|+         |+||+|+||||.+||++||+.++                |...+++|.++++|
T Consensus       272 ~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~----------------p~~~~v~v~~~~~r  335 (375)
T PTZ00452        272 AGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLV----------------PSQLKIQVAAPPDR  335 (375)
T ss_pred             CChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhC----------------CCCceeEEecCCCc
Confidence            699999999999999996         99999999999999999999985                55678999999999


Q ss_pred             ccchhhhhhhhcCCcccccceecHHHHhhhCCceEEecC
Q psy2594          73 RYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNP  111 (117)
Q Consensus        73 ~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~~~~~  111 (117)
                      ++++|+||||+|+++.|+++||||+||+|+|++++++|+
T Consensus       336 ~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~  374 (375)
T PTZ00452        336 RFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKC  374 (375)
T ss_pred             ceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeec
Confidence            999999999999999999999999999999999997754

>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>KOG0676|consensus Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>KOG0679|consensus Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>KOG0680|consensus Back     alignment and domain information
>KOG0678|consensus Back     alignment and domain information
>KOG0677|consensus Back     alignment and domain information
>KOG0681|consensus Back     alignment and domain information
>KOG0797|consensus Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative Back     alignment and domain information
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis Back     alignment and domain information
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query117
1k8k_A418 Crystal Structure Of Arp23 COMPLEX Length = 418 3e-40
3dwl_A427 Crystal Structure Of Fission Yeast Arp2/3 Complex L 2e-23
1yag_A375 Structure Of The Yeast Actin-human Gelsolin Segment 2e-06
1yvn_A375 The Yeast Actin Val 159 Asn Mutant Complex With Hum 2e-06
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 7e-06
1atn_A373 Atomic Structure Of The Actin:dnase I Complex Lengt 8e-06
3b63_E365 Actin Filament Model In The Extended Form Of Acroms 8e-06
2w49_D372 Isometrically Contracting Insect Asynchronous Fligh 8e-06
2gwj_A371 Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form 8e-06
3mn5_A359 Structures Of Actin-Bound Wh2 Domains Of Spire And 8e-06
3g37_O376 Cryo-Em Structure Of Actin Filament In The Presence 8e-06
1qz5_A375 Structure Of Rabbit Actin In Complex With Kabiramid 8e-06
1eqy_A377 Complex Between Rabbit Muscle Alpha-Actin: Human Ge 8e-06
1t44_A370 Structural Basis Of Actin Sequestration By Thymosin 8e-06
3m6g_A371 Crystal Structure Of Actin In Complex With Lobophor 8e-06
1kxp_A375 Crystal Structure Of Human Vitamin D-binding Protei 9e-06
1lcu_A371 Polylysine Induces An Antiparallel Actin Dimer That 9e-06
1ijj_A377 The X-Ray Crystal Structure Of The Complex Between 9e-06
4b1v_A376 Structure Of The Phactr1 Rpel-N Domain Bound To G-A 9e-06
3b63_A365 Actin Filament Model In The Extended Form Of Acroms 1e-05
3b63_C365 Actin Filament Model In The Extended Form Of Acroms 1e-05
3ci5_A375 Complex Of Phosphorylated Dictyostelium Discoideum 2e-05
1c0f_A368 Crystal Structure Of Dictyostelium Caatp-Actin In C 2e-05
3chw_A375 Complex Of Dictyostelium Discoideum Actin With Prof 2e-05
3b63_L365 Actin Filament Model In The Extended Form Of Acroms 2e-05
3a5l_C375 Crystal Structure Of A Dictyostelium P109a Mg2+-Act 2e-05
1nlv_A375 Crystal Structure Of Dictyostelium Discoideum Actin 2e-05
3a5m_C375 Crystal Structure Of A Dictyostelium P109i Mg2+-Act 2e-05
2oan_A375 Structure Of Oxidized Beta-Actin Length = 375 2e-05
2btf_A375 The Structure Of Crystalline Profilin-Beta-Actin Le 2e-05
4efh_A375 Acanthamoeba Actin Complex With Spir Domain D Lengt 2e-05
3w3d_A374 Crystal Structure Of Smooth Muscle G Actin Dnase I 2e-05
3u4l_A375 Cryocooled Bovine Profilin:actin Crystal Structure 2e-05
2hf3_A374 Crystal Structure Of Monomeric Actin In The Adp Bou 2e-05
3byh_A374 Model Of Actin-Fimbrin Abd2 Complex Length = 374 2e-05
1d4x_A375 Crystal Structure Of Caenorhabditis Elegans Mg-Atp 2e-05
3eks_A375 Crystal Structure Of Monomeric Actin Bound To Cytoc 2e-05
1c0g_A375 Crystal Structure Of 1:1 Complex Between Gelsolin S 3e-05
1dej_A375 Crystal Structure Of A DictyosteliumTETRAHYMENA CHI 3e-05
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 Back     alignment and structure 
Iteration: 1

 Score =  159 bits (403), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 77/84 (91%)
Query: 34  LQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVC 93
           LQRD+KR VDARLKLSE LSGG +KPKPIDVQVITHHMQRYAVWFGGSMLASTPEFY+VC
Sbjct: 335 LQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVC 394
Query: 94  HTKAAYEEYGPSICRHNPVFGTMT 117
           HTK  YEE GPSICRHNPVFG M+
Sbjct: 395 HTKKDYEEIGPSICRHNPVFGVMS 418
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 Back     alignment and structure
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 Back     alignment and structure
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 Back     alignment and structure
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 Back     alignment and structure
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 Back     alignment and structure
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 Back     alignment and structure
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 Back     alignment and structure
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 Back     alignment and structure
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 Back     alignment and structure
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 Back     alignment and structure
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 Back     alignment and structure
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 Back     alignment and structure
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 Back     alignment and structure
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 Back     alignment and structure
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 Back     alignment and structure
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 Back     alignment and structure
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 Back     alignment and structure
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 Back     alignment and structure
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 Back     alignment and structure
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 Back     alignment and structure
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 Back     alignment and structure
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 Back     alignment and structure
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 Back     alignment and structure
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 Back     alignment and structure
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 Back     alignment and structure
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 Back     alignment and structure
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 Back     alignment and structure
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 Back     alignment and structure
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query117
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 5e-33
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 3e-31
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 3e-23
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 5e-20
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 5e-15
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
 Score =  117 bits (296), Expect = 5e-33
 Identities = 73/84 (86%), Positives = 77/84 (91%)

Query: 34  LQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYEVC 93
           LQRD+KR VDARLKLSE LSGG +KPKPIDVQVITHHMQRYAVWFGGSMLASTPEFY+VC
Sbjct: 335 LQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVC 394

Query: 94  HTKAAYEEYGPSICRHNPVFGTMT 117
           HTK  YEE GPSICRHNPVFG M+
Sbjct: 395 HTKKDYEEIGPSICRHNPVFGVMS 418
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query117
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 99.97
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 99.96
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 99.96
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 99.96
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 99.93
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 99.93
4am6_A655 Actin-like protein ARP8; nuclear protein, chromati 99.77
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 98.27
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 97.98
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 97.92
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 97.58
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 97.34
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 97.17
1yuw_A 554 Heat shock cognate 71 kDa protein; chaperone; 2.60 95.97
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 95.95
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 95.03
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 94.86
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 91.91
4ehu_A276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 90.57
4b9q_A 605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 89.79
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 89.25
2ews_A287 Pantothenate kinase; PANK, structural genomics, st 81.66
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=99.97  E-value=4.5e-33  Score=220.56  Aligned_cols=113  Identities=47%  Similarity=0.720  Sum_probs=92.2

Q ss_pred             CCHHHHHHHHHhcCCCce---------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594           2 PPLVATRLKWLLNCPDEA---------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ   72 (117)
Q Consensus         2 ~gl~~~i~~si~~cp~d~---------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~   72 (117)
                      +||+++|.+||++||+|+         |+||+|+||||.+||++||+.+++.+++.+....+.  .|..++|+|.++++|
T Consensus       305 ~gI~~~i~~sI~~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~--~p~~~~vkv~~~~~r  382 (427)
T 3dwl_A          305 TPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGA--KSGGVDVNVISHKRQ  382 (427)
T ss_dssp             SCHHHHHHHHHHTSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC---------------CCCCCEECCTTC
T ss_pred             CCccHHHHHHHHhCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhcccccccccc--CCCceeEEEecCCcc
Confidence            689999999999999997         999999999999999999999986544322221111  256778999999999


Q ss_pred             ccchhhhhhhhcCCcccccceecHHHHhhhCCceEEecCCCCCC
Q psy2594          73 RYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNPVFGTM  116 (117)
Q Consensus        73 ~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~~~~~~f~~~  116 (117)
                      .|++|+||||||+++.|+++||||+||+|+|++++|+++.|++.
T Consensus       383 ~~s~WiGGSilasl~~f~~~witk~EYeE~G~~iv~~~~~~~~~  426 (427)
T 3dwl_A          383 RNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARRYQIFGNS  426 (427)
T ss_dssp             TTHHHHHHHHHHHSTTHHHHSEEHHHHHHSCGGGGSCCCC----
T ss_pred             ccceecCceeeccccchhheeEEHHHHhhhChHhheecccccCC
Confidence            99999999999999999999999999999999999999999874
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 117
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 2e-33
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 1e-14
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  114 bits (286), Expect = 2e-33
 Identities = 74/97 (76%), Positives = 80/97 (82%)

Query: 21  CTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQRYAVWFGG 80
              ++  R     LQRD+KR VDARLKLSE LSGG +KPKPIDVQVITHHMQRYAVWFGG
Sbjct: 162 SGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGG 221

Query: 81  SMLASTPEFYEVCHTKAAYEEYGPSICRHNPVFGTMT 117
           SMLASTPEFY+VCHTK  YEE GPSICRHNPVFG M+
Sbjct: 222 SMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGVMS 258
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query117
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 99.97
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 99.33
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 97.48
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 96.43
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 94.76
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 94.5
d2aa4a2170 N-acetylmannosamine kinase NanK {Escherichia coli 86.73
d2ap1a1186 Putative regulator protein YcfX {Salmonella typhim 86.55
d1xc3a2176 Putative fructokinase YhdR {Bacillus subtilis [Tax 84.3
d1huxa_259 Hydroxyglutaryl-CoA dehydratase component A {Acida 84.2
d2gupa2175 Hypothetical protein SP2142 {Streptococcus pneumon 84.14
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.7e-36  Score=220.16  Aligned_cols=115  Identities=68%  Similarity=1.091  Sum_probs=102.6

Q ss_pred             CCHHHHHHHHHhcCCCce---------eecCCCCcccHHHHHHHHHHhhHHHhhhhhhhccCCCCCCCceeEEEEeCCCc
Q psy2594           2 PPLVATRLKWLLNCPDEA---------ECTPNSKHRAKKTWLQRDIKRVVDARLKLSETLSGGYIKPKPIDVQVITHHMQ   72 (117)
Q Consensus         2 ~gl~~~i~~si~~cp~d~---------l~GG~s~~~Gf~~RL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~   72 (117)
                      +||+++|++||++||+|+         |+||+|++|||.+||++||+.+++...+.........+.|..++++|.++++|
T Consensus       134 ~~l~~~i~~si~~~~~d~r~~L~~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r  213 (258)
T d1k8ka2         134 QPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQ  213 (258)
T ss_dssp             CCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTC
T ss_pred             ccchHHHHHHHHhccHHhhHHHHhCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCC
Confidence            689999999999999998         99999999999999999999998876655555555555677788999999999


Q ss_pred             ccchhhhhhhhcCCcccccceecHHHHhhhCCceEEecCCCCCC
Q psy2594          73 RYAVWFGGSMLASTPEFYEVCHTKAAYEEYGPSICRHNPVFGTM  116 (117)
Q Consensus        73 ~~~aW~Ggsila~l~~~~~~~itr~eY~E~G~~~~~~~~~f~~~  116 (117)
                      +|++|+||||+|+++.|+++||||+||+|+|++||++|+||+.|
T Consensus       214 ~~s~W~Ggsila~l~~f~~~~Itk~eY~E~G~~iv~~rk~f~~~  257 (258)
T d1k8ka2         214 RYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGVM  257 (258)
T ss_dssp             TTHHHHHHHHHTTSHHHHHHSEEHHHHHHHCGGGGGCCCCCSCC
T ss_pred             CceehHHHHHHHcCccHHhheecHHHHhhhChHHHhcCCCcCCC
Confidence            99999999999999999999999999999999999999999987
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1xc3a2 c.55.1.10 (A:119-294) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure