Conserved Domains and Related Protein Families
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability
Query
82
KOG0629|consensus 510
99.94
PLN02590 539
probable tyrosine decarboxylase
98.41
TIGR03799 522
NOD_PanD_pyr putative pyridoxal-dependent aspartat
98.2
PLN02880 490
tyrosine decarboxylase
97.9
cd06450 345
DOPA_deC_like DOPA decarboxylase family. This fami
95.86
PRK06290 410
aspartate aminotransferase; Provisional
92.21
KOG1359|consensus 417
91.12
PF15217 180
TSC21: TSC21 family
86.4
PRK05387 353
histidinol-phosphate aminotransferase; Provisional
86.31
KOG0628|consensus 511
85.54
cd06454 349
KBL_like KBL_like; this family belongs to the pyri
85.31
KOG0634|consensus 472
85.18
PRK13520 371
L-tyrosine decarboxylase; Provisional
84.41
PRK08153 369
histidinol-phosphate aminotransferase; Provisional
84.27
PRK05958 385
8-amino-7-oxononanoate synthase; Reviewed
83.72
PRK09792 421
4-aminobutyrate transaminase; Provisional
82.75
PRK02731 367
histidinol-phosphate aminotransferase; Validated
82.02
TIGR01788 431
Glu-decarb-GAD glutamate decarboxylase. This model
81.51
cd00617 431
Tnase_like Tryptophanase family (Tnase). This fami
81.46
PRK09105 370
putative aminotransferase; Provisional
81.21
PRK03158 359
histidinol-phosphate aminotransferase; Provisional
81.01
cd06451 356
AGAT_like Alanine-glyoxylate aminotransferase (AGA
81.0
PRK04635 354
histidinol-phosphate aminotransferase; Provisional
80.68
PRK13392 410
5-aminolevulinate synthase; Provisional
80.51
>KOG0629|consensus
Back Hide alignment and domain information
Probab=99.94 E-value=1.6e-27 Score=192.05 Aligned_cols=74 Identities=53% Similarity=0.887 Sum_probs=70.7
Q ss_pred HHHhcCCC-CchhhhhhcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcccC
Q psy2616 9 EQLHSQSK-NSNSSSSLQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82 (82)
Q Consensus 9 ~~l~~~~~-~e~~~kL~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~dl 82 (82)
+.||+.+. +++|.+|+||||+||++|+++||+||+|||++.++||||+|++||++|.+|+||+||||+|||+||
T Consensus 436 ~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlgq~l 510 (510)
T KOG0629|consen 436 PSLRGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLGQDL 510 (510)
T ss_pred hHhccCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhccCC
Confidence 46888877 779999999999999999999999999999999999999999999999999999999999999997
>PLN02590 probable tyrosine decarboxylase
Back Show alignment and domain information
Probab=98.41 E-value=2.9e-07 Score=75.39 Aligned_cols=59 Identities=7% Similarity=0.124 Sum_probs=53.1
Q ss_pred hhhcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 22 SSLQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 22 kL~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
.+.+++..|.++|.++|.++|+++.+.++ .++|++++||.+|.+|||+++++|.+.+..
T Consensus 474 ~~~~ln~~l~~~l~~~G~~~vs~t~~~g~-~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~ 532 (539)
T PLN02590 474 QCNERNRELLAAVNSTGKIFISHTALSGK-FVLRFAVGAPLTEEKHVTEAWQIIQKHASK 532 (539)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeEECCE-EEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999998876 499999999999999999999999988754
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase
Back Show alignment and domain information
Probab=98.20 E-value=2e-06 Score=69.95 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=49.9
Q ss_pred hhhhcchHHHHHHHhhccccceeecCCC-----CC-CCcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 21 SSSLQVAPKIKERMMKSGSMMITYQPIH-----AL-PNFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 21 ~kL~kVap~IKerM~~~Gs~MV~YqPl~-----~~-~NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
+.+++++..|.+++..+|..+|++..+. ++ ..+||+|++||.+|.+|||.+|+|=.+
T Consensus 459 ~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~~~~ 521 (522)
T TIGR03799 459 ELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDEQRE 521 (522)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHHhhc
Confidence 4578899999999999999999999875 22 379999999999999999999998543
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
>PLN02880 tyrosine decarboxylase
Back Show alignment and domain information
Probab=97.90 E-value=1.2e-05 Score=64.74 Aligned_cols=58 Identities=7% Similarity=0.134 Sum_probs=51.8
Q ss_pred hhcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 23 SLQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 23 L~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
+++++..|.++|..+|.++|++....++ .++|+++.||.+|.+|+|.+++.|.++++.
T Consensus 427 ~~~~n~~l~~~l~~~g~~~v~~t~~~g~-~~lR~~~~n~~tt~~di~~~~~~i~~~~~~ 484 (490)
T PLN02880 427 GNKLNHDLLDAVNSSGKIFISHTVLSGK-YVLRFAVGAPLTEERHVTAAWKVLQDEASK 484 (490)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEEECCE-EEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 4556778999999999999999988764 599999999999999999999999998864
>cd06450 DOPA_deC_like DOPA decarboxylase family
Back Show alignment and domain information
Probab=95.86 E-value=0.018 Score=42.16 Aligned_cols=51 Identities=24% Similarity=0.444 Sum_probs=39.9
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.++|.++|-..+...+.. .++++|+++.++..|.+|+|.+++.|+++
T Consensus 295 ~~~i~~~L~~~g~~~~~~~~~~-~~~~lRis~~~~~~t~~di~~l~~~l~~~ 345 (345)
T cd06450 295 NYDLSDRLNERGGWHVPATTLG-GPNVLRFVVTNPLTTRDDADALLEDIERA 345 (345)
T ss_pred HHHHHHHHHhcCCEEEEeeEEC-CeEEEEEEecCCCCCHHHHHHHHHHHHhC
Confidence 3468889999876666554433 46899999888878999999999999764
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
>PRK06290 aspartate aminotransferase; Provisional
Back Show alignment and domain information
Probab=92.21 E-value=0.33 Score=37.78 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=41.4
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
+-.+.++|.++|...+- |..+.++|+|+.++.+..+.+++|.+++++.+.=.
T Consensus 353 ~~~~~~~Ll~~~~v~~~--p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~ 404 (410)
T PRK06290 353 AEEFSQYLIKEKLISTV--PWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRRLS 404 (410)
T ss_pred HHHHHHHHHHhCCEEEE--CCccccCeEEEEEEcccccccchhHHHHHHHHHHh
Confidence 34677899998866542 55455689999999999999999999999987633
>KOG1359|consensus
Back Show alignment and domain information
Probab=91.12 E-value=0.55 Score=38.13 Aligned_cols=57 Identities=21% Similarity=0.351 Sum_probs=45.2
Q ss_pred cchHHHHHHHhhccccceeecCCCCCCCcceEeec-CCCCChhhHHHHHHHHHHhccc
Q psy2616 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQ-NSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 25 kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~-np~~t~~dmD~ll~eIerlG~d 81 (82)
+.|.+....|.++|-..|+|+|.--.++==|+-+. +.+-|++|+|.+|+...++|+-
T Consensus 355 ~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~ 412 (417)
T KOG1359|consen 355 RLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRF 412 (417)
T ss_pred HHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHh
Confidence 34557789999999999999997655555555553 6778999999999999988863
>PF15217 TSC21: TSC21 family
Back Show alignment and domain information
Probab=86.40 E-value=0.3 Score=35.77 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=20.7
Q ss_pred hccccceeecCCCC-------------------CCCcceEeec-CCCCC
Q psy2616 36 KSGSMMITYQPIHA-------------------LPNFFRLVLQ-NSALD 64 (82)
Q Consensus 36 ~~Gs~MV~YqPl~~-------------------~~NFFR~V~~-np~~t 64 (82)
-..|.||+|||.+. ..+|+|.+-+ ||.++
T Consensus 17 YqSSyMvdykpygk~kysrvtpqEQ~Kld~QLr~kEfyrp~P~pnPkL~ 65 (180)
T PF15217_consen 17 YQSSYMVDYKPYGKHKYSRVTPQEQAKLDTQLRDKEFYRPIPSPNPKLE 65 (180)
T ss_pred hhhhceeeccccccccccccCHHHHHHHHHHhhhhhhcccCCCCCcccc
Confidence 35679999999862 2469998864 66554
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Back Show alignment and domain information
Probab=86.31 E-value=2.5 Score=31.16 Aligned_cols=48 Identities=13% Similarity=0.403 Sum_probs=33.6
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
+..+.+++.++| ..|.+...+...+|||+.+. +.++++.+++.|.++-
T Consensus 304 ~~~~~~~l~~~g-i~v~~~~~~~~~~~iRis~~----~~~~~~~~~~~L~~~~ 351 (353)
T PRK05387 304 AAELAAKLRERG-IIVRHFNKPRIDQFLRITIG----TDEEMEALVDALKEIL 351 (353)
T ss_pred HHHHHHHHHHCC-EEEEECCCCCCCCeEEEEeC----CHHHHHHHHHHHHHHh
Confidence 346778888888 45543322234689999875 4589999999988763
>KOG0628|consensus
Back Show alignment and domain information
Probab=85.54 E-value=1.2 Score=37.36 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=46.1
Q ss_pred hcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 24 LQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 24 ~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
++++..+-.|+..+|+.-+.-..+.+ .-|-|+++|+|.++.+|||+--++|......
T Consensus 415 N~~ne~Ll~~in~~g~i~l~~~~l~g-k~vlRf~V~s~~t~~~di~~a~~~I~~~a~~ 471 (511)
T KOG0628|consen 415 NEINEALLNRLNSSGRIHLVPASLHG-KFVLRFAVCSPLTNESDIDEAWKIIFEAADE 471 (511)
T ss_pred cHHHHHHHHHHHhcCcEEEEEeeecc-eEEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Confidence 45677777899999987776665554 3577999999999999999999999887653
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)
Back Show alignment and domain information
Probab=85.31 E-value=2.9 Score=30.39 Aligned_cols=51 Identities=18% Similarity=0.454 Sum_probs=35.1
Q ss_pred hHHHHHHHhhccccce---eecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 27 APKIKERMMKSGSMMI---TYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV---~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
+..+.++|..+| ..+ +|.......+.+|+.+ +...|.+|+|.+++.|+.+|
T Consensus 296 ~~~~~~~L~~~g-I~~~~~~~~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~ 349 (349)
T cd06454 296 AVAFSDALLERG-IYVQAIRYPTVPRGTARLRISL-SAAHTKEDIDRLLEALKEVG 349 (349)
T ss_pred HHHHHHHHHhCC-ceEEEecCCccCCCCCeEEEEE-eCCCCHHHHHHHHHHHHHhC
Confidence 356778888887 444 2311112247899874 45578999999999999876
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
>KOG0634|consensus
Back Show alignment and domain information
Probab=85.18 E-value=1.1 Score=37.35 Aligned_cols=54 Identities=28% Similarity=0.423 Sum_probs=37.0
Q ss_pred hhhhcchHHHHHHHhhcccc-------ceeecCCCCCCC-cceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 21 SSSLQVAPKIKERMMKSGSM-------MITYQPIHALPN-FFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 21 ~kL~kVap~IKerM~~~Gs~-------MV~YqPl~~~~N-FFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
+.+..+--.|+..+++.|-. ||+ |..++.+ |||+.++ ..+.|.+.+.|+|+|..
T Consensus 402 ~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~--p~~s~~kiffRls~a-----~a~~e~l~~g~~rf~~~ 463 (472)
T KOG0634|consen 402 KSINQIEEIIFIKAVKNGVKLVCGSWFMVD--PESSWSKIFFRLSIA-----FAEPEKLDEGIERFGSV 463 (472)
T ss_pred cchHHHHHHHHHHHHHCCeEEecCceeEEc--CccCCCcceEEEEee-----cCCHHHHHHHHHHHHHH
Confidence 34455667888999999854 444 5556555 9999874 33455677888888753
>PRK13520 L-tyrosine decarboxylase; Provisional
Back Show alignment and domain information
Probab=84.41 E-value=2.9 Score=30.86 Aligned_cols=47 Identities=13% Similarity=0.439 Sum_probs=32.4
Q ss_pred HHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
..+..+|.++| +.|.. ...++.+|+.+ .+..|++|||.+++.++++-
T Consensus 323 ~~v~~~L~~~g-i~v~~---~~~~~~iRis~-~~~~t~edi~~~~~~l~~~~ 369 (371)
T PRK13520 323 DEVREKLRERG-WRVSV---TRCPEALRIVC-MPHVTREHIENFLEDLKEVK 369 (371)
T ss_pred HHHHHHHHHCC-ceecc---CCCCCEEEEEE-ECCCCHHHHHHHHHHHHHHh
Confidence 34566666666 44432 12357899874 45789999999999998763
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Back Show alignment and domain information
Probab=84.27 E-value=3.1 Score=31.50 Aligned_cols=47 Identities=13% Similarity=0.315 Sum_probs=33.9
Q ss_pred chHHHHHHHhhccccceeecCCC-CCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~-~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
.+..+.++|.+.| ..|.+ |.. ...++||+.+. +.++++.+++.+.++
T Consensus 315 ~a~~l~~~l~~~G-i~v~~-p~~~~~~~~iRis~~----~~~~~~~~~~al~~~ 362 (369)
T PRK08153 315 FARAVLDGLIARD-IFVRM-PGVAPLDRCIRVSCG----PDEELDLFAEALPEA 362 (369)
T ss_pred cHHHHHHHHHHCC-eEEee-CCCCCCCCeEEEecC----CHHHHHHHHHHHHHH
Confidence 4567888899999 55543 321 23479998865 589999999988765
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Back Show alignment and domain information
Probab=83.72 E-value=3.8 Score=30.21 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=33.7
Q ss_pred hHHHHHHHhhcccccee-ecCC--CCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMIT-YQPI--HALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~-YqPl--~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.+++.+.| ..|. +.+. +...|++|+.+ +...|++++|.+++.|+++
T Consensus 332 ~~~~~~~l~~~g-I~v~~~~~~~~~~~~~~lRis~-~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 332 ALALAAALQEQG-FWVGAIRPPTVPAGTSRLRITL-TAAHTEADIDRLLEALAEA 384 (385)
T ss_pred HHHHHHHHHHCC-ceEecccCCCCCCCCceEEEEe-cCCCCHHHHHHHHHHHHhc
Confidence 346788888888 5553 2221 12248999774 2346899999999998764
>PRK09792 4-aminobutyrate transaminase; Provisional
Back Show alignment and domain information
Probab=82.75 E-value=3.9 Score=32.06 Aligned_cols=50 Identities=18% Similarity=0.339 Sum_probs=36.7
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
.+..+..+|.++| +++. |.+..+|.+|+.. +-..|++++|..++-++++=
T Consensus 370 ~~~~l~~~~~~~G-v~i~--~~g~~~~~irl~P-~l~i~~~ei~~~~~~l~~~l 419 (421)
T PRK09792 370 IAQKIQQRALAQG-LLLL--TCGAYGNVIRFLY-PLTIPDAQFDAAMKILQDAL 419 (421)
T ss_pred HHHHHHHHHHHCC-cEEe--ecCCCCCEEEEeC-CCcCCHHHHHHHHHHHHHHH
Confidence 4667888999999 5553 4344579999763 22478999999999888763
>PRK02731 histidinol-phosphate aminotransferase; Validated
Back Show alignment and domain information
Probab=82.02 E-value=4.7 Score=29.99 Aligned_cols=47 Identities=17% Similarity=0.386 Sum_probs=32.2
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.++|.+.|=........ +.++++|+.++ +.+++|.+++.++++
T Consensus 317 ~~~~~~~L~~~gI~v~~~~~~-~~~~~iRis~~----~~~e~~~l~~aL~~~ 363 (367)
T PRK02731 317 AAEAYQALLKRGVIVRPVAGY-GLPNALRITIG----TEEENRRFLAALKEF 363 (367)
T ss_pred HHHHHHHHHHCCEEEEeCCCC-CCCCeEEEecC----CHHHHHHHHHHHHHH
Confidence 456778888888333222211 23589998864 678999999999875
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase
Back Show alignment and domain information
Probab=81.51 E-value=3.2 Score=33.27 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=40.3
Q ss_pred HHHHHHHhhccccceeecCCC--CCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 28 PKIKERMMKSGSMMITYQPIH--ALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~--~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
..|.++|.++|-....|+... +..-|+|++ .+|.++.+.+|.+|+.|..+...
T Consensus 375 ~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~-~~~~~~~~~~~~~~~~~~~~~~~ 429 (431)
T TIGR01788 375 YDLSHRLRERGWIVPAYTLPKNAEDIVVMRIV-VREGFSRDLAELLIEDIEAALAY 429 (431)
T ss_pred HHHHHHHHHCCCcccCCCCCCccCCeEEEEEE-ecCCCCHHHHHHHHHHHHHHHHh
Confidence 478899999996666666532 223678987 48888999999999999887554
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
>cd00617 Tnase_like Tryptophanase family (Tnase)
Back Show alignment and domain information
Probab=81.46 E-value=1.5 Score=35.22 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=38.4
Q ss_pred HHhhccccceeecCCCC-----CCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 33 RMMKSGSMMITYQPIHA-----LPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 33 rM~~~Gs~MV~YqPl~~-----~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
|.++.|++|.+++|..+ ..++.|+.+.==.-|.++||++.+-|.++-+
T Consensus 355 ~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~ 407 (431)
T cd00617 355 RAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYE 407 (431)
T ss_pred eEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHh
Confidence 34677999999999875 3599999874334789999999999988754
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
>PRK09105 putative aminotransferase; Provisional
Back Show alignment and domain information
Probab=81.21 E-value=4.5 Score=30.84 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=34.6
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
+..+.++|.++| ..|+... +..++|+|+.++ +.+++|.+++.++++-
T Consensus 322 ~~~l~~~L~~~g-I~v~~~~-~~~~~~~Ris~~----~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 322 AKAVADAMAKQG-VFIGRSW-PIWPNWVRVTVG----SEEEMAAFRSAFAKVM 368 (370)
T ss_pred HHHHHHHHHHCC-cEEecCC-CCCCCeEEEEcC----CHHHHHHHHHHHHHHh
Confidence 457888998887 6675432 234689998876 4678999999998764
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Back Show alignment and domain information
Probab=81.01 E-value=4.1 Score=30.31 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=35.4
Q ss_pred hhhhhcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 20 SSSSLQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 20 ~~kL~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
|-++..-+..+.+++.+.|-........ +.++|+|+.++ +.+++|.+++.|+++
T Consensus 305 ~~~~~~~~~~~~~~l~~~gv~v~~g~~f-~~~~~iRi~~~----~~~~~~~l~~al~~~ 358 (359)
T PRK03158 305 FVDTGRDANELFEALLKKGYIVRSGAAL-GFPTGVRITIG----LKEQNDKIIELLKEL 358 (359)
T ss_pred EEECCCCHHHHHHHHHHCCeEEeeCCCC-CCCCeEEEecC----CHHHHHHHHHHHHHh
Confidence 4444333567778888888332221111 34689998865 788999999999875
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family
Back Show alignment and domain information
Probab=81.00 E-value=5.5 Score=29.33 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=33.8
Q ss_pred hHHHHHHHhhc-cccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKS-GSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~-Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.+++.++ | ..+..-.....++.+|+. ..+..|++|||.+++.+.++
T Consensus 304 ~~~~~~~L~~~~g-I~~~~g~~~~~~~~iRis-~~~~~~~e~v~~~~~~l~~~ 354 (356)
T cd06451 304 GDEVVRRLMKRYN-IEIAGGLGPTAGKVFRIG-HMGEATREDVLGVLSALEEA 354 (356)
T ss_pred HHHHHHHHHHhCC-EEEecccccccCCEEEEe-cCCCCCHHHHHHHHHHHHHH
Confidence 35677888887 7 333211011346799977 44568999999999998765
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Back Show alignment and domain information
Probab=80.68 E-value=5.6 Score=29.81 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=32.5
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
+..+++++.+.| ..|........++++|+.++ +.+++|.+++-+++
T Consensus 306 ~~~~~~~l~~~g-v~v~~~~~~~~~~~lRis~~----~~e~~~~l~~al~~ 351 (354)
T PRK04635 306 VDAVFKALWDAG-IVARAYKDPRLANCIRFSFS----NRAETDKLIGLIRN 351 (354)
T ss_pred HHHHHHHHHHCC-EEEEECCCCCCCCeEEEEeC----CHHHHHHHHHHHHH
Confidence 446778888888 55543222334689998865 57999999998865
>PRK13392 5-aminolevulinate synthase; Provisional
Back Show alignment and domain information
Probab=80.51 E-value=5.7 Score=30.39 Aligned_cols=52 Identities=19% Similarity=0.333 Sum_probs=35.2
Q ss_pred HHHHHHHh-hccccceee-c-CC-CCCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 28 PKIKERMM-KSGSMMITY-Q-PI-HALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 28 p~IKerM~-~~Gs~MV~Y-q-Pl-~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
..+.++|. ++| ..|.. . |. +...+.+|+.+ +...|++|+|.+++.|+++.++
T Consensus 342 ~~~~~~L~~~~G-I~v~~~~~p~~~~~~~~lRis~-~~~~t~edid~l~~aL~~~~~~ 397 (410)
T PRK13392 342 KAISDRLMSEHG-IYIQPINYPTVPRGTERLRITP-TPLHDDEDIDALVAALVAIWDR 397 (410)
T ss_pred HHHHHHHHHhCC-EEEeeeCCCCCCCCCceEEEEE-CCCCCHHHHHHHHHHHHHHHHH
Confidence 46778886 568 44432 1 21 22237899774 3467899999999999987654
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability
Query 82
d1js3a_ 476
DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]
97.72
d1v72a1 345
Phenylserine aldolase PSALD {Pseudomonas putida [T
96.29
d1svva_ 340
Low-specificity threonine aldolase {Leishmania maj
95.47
d1m6sa_ 343
Low-specificity threonine aldolase {Thermotoga mar
94.69
d1pmma_ 450
Glutamate decarboxylase beta, GadB {Escherichia co
93.51
d1fc4a_ 401
2-amino-3-ketobutyrate CoA ligase {Escherichia col
89.77
d1c4ka2 462
Ornithine decarboxylase major domain {Lactobacillu
85.58
d1c7ga_ 456
Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5
84.96
d2v1pa1 467
Tryptophan indol-lyase (tryptophanase) {Escherichi
83.53
d1fg7a_ 354
Histidinol-phosphate aminotransferase HisC {Escher
83.36
d1lc5a_ 355
L-threonine-O-3-phosphate decarboxylase CobD {Salm
82.47
d1wsta1 403
Multiple substrate aminotransferase, MSAT {Thermoc
82.34
d1elua_ 381
Cystine C-S lyase C-des {Synechocystis sp. [TaxId:
81.87
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.72 E-value=7.3e-06 Score=61.98 Aligned_cols=56 Identities=11% Similarity=0.215 Sum_probs=48.4
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcccC
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~dl 82 (82)
+...+.+++..+|.++++...+.++ -.+|+++.||.+|++|+|.+++.|+++|++|
T Consensus 419 ~n~~l~~~l~~~G~~~~s~t~~~g~-~~lR~~i~n~~Tt~~did~~~~~i~~~a~~l 474 (476)
T d1js3a_ 419 LNEALLERINSARKIHLVPCRLRGQ-FVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474 (476)
T ss_dssp HHHHHHHHHHHHTSCBCEEEEETTE-EEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEeeeeECCE-EEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4467889999999999998776543 4889999999999999999999999999764
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]
Probab=96.29 E-value=0.0042 Score=40.21 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=38.2
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
+...+.+++.++| ..|. +.....+..|++ .++.+|++|||.+|+.|.+.+
T Consensus 296 ~~~~~~~~L~~~g-i~v~--~~~~~~~~lR~~-~~~~~T~edid~~le~lr~aa 345 (345)
T d1v72a1 296 LDSAMIDALLKAG-FGFY--HDRWGPNVVRFV-TSFATTAEDVDHLLNQVRLAA 345 (345)
T ss_dssp ECHHHHHHHHHTT-CBCB--CSSSSTTEEEEE-CCTTCCHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHcC-CCcc--ccCCCCCEEEEE-CCCCCCHHHHHHHHHHHHHhC
Confidence 5678889999999 4442 222336899977 568899999999999998753
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]
Probab=95.47 E-value=0.0066 Score=38.35 Aligned_cols=51 Identities=18% Similarity=0.312 Sum_probs=38.3
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+.+..-+++.++|.. .++...+....+.|++ .++.+|++|||.+++.|.++
T Consensus 290 ~~~~~~~~l~~~~~~-~~~~~~~~~~~~vR~s-~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 290 LENTMIAELNNDFDM-YTVEPLKDGTCIMRLC-TSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp EEHHHHHHHTTTEEC-EEEEEETTTEEEEEEE-CCTTCCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhhhh-hcccccCCCCcEEEEE-CCCCCCHHHHHHHHHHHhcC
Confidence 455666788888854 4554444556899977 47889999999999999875
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]
Probab=94.69 E-value=0.011 Score=38.31 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=37.5
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
-+..+.++|.++| ..+ +|.+ ++..|++ .++.+|++|||++++-|+++-+
T Consensus 292 ~a~~l~~~L~~~G-i~v--~~~~--~~~iRi~-~~~~~t~edid~~v~~l~~v~~ 340 (343)
T d1m6sa_ 292 NAHGFIEALRNSG-VLA--NAVS--DTEIRLV-THKDVSRNDIEEALNIFEKLFR 340 (343)
T ss_dssp CHHHHHHHHHHHT-EEC--EEEE--TTEEEEE-CCTTSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCC-CEE--ecCC--CCEEEEE-CCCCCCHHHHHHHHHHHHHHHH
Confidence 3467889999999 433 3432 5778977 5678999999999999998754
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]
Probab=93.51 E-value=0.039 Score=40.54 Aligned_cols=51 Identities=8% Similarity=0.125 Sum_probs=39.4
Q ss_pred HHHHHHhhccccceeec--CCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 29 KIKERMMKSGSMMITYQ--PIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~Yq--Pl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
.+..+|..+|-.+-+|+ |......++|+| .++.+|++.+|.+|+.|.+.-+
T Consensus 392 ~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvv-v~~~~t~e~~d~lv~dl~~~v~ 444 (450)
T d1pmma_ 392 DLSERLRLRGWQVPAFTLGGEATDIVVMRIM-CRRGFEMDFAELLLEDYKASLK 444 (450)
T ss_dssp HHHHHHHTTTCBCCEEECCTTCTTCEEEEEE-CCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeeeccCcCCCcCCcEEEEEE-ccCCCCHHHHHHHHHHHHHHHH
Confidence 57799999996666675 333556799977 5677899999999999987643
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]
Probab=89.77 E-value=0.32 Score=34.66 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=38.7
Q ss_pred hHHHHHHHhhccccceeecCCC--CCCCcceEeecCCCCChhhHHHHHHHHHHhcccC
Q psy2616 27 APKIKERMMKSGSMMITYQPIH--ALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~--~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~dl 82 (82)
+..+.++|.++|=+...+.|.- ....=.|++ .+...|++|||.+++-|.+++++|
T Consensus 341 a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~-~~a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 341 AQKFARELQKEGIYVTGFFYPVVPKGQARIRTQ-MSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp HHHHHHHHHHTTEECCEECTTSSCTTCEEEEEE-CCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCceEEeECCCCCCCCCceEEEE-ECCCCCHHHHHHHHHHHHHHHHHh
Confidence 4567788999995544454431 111226866 467889999999999999998764
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=85.58 E-value=0.5 Score=33.26 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=33.1
Q ss_pred HHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
..+.+.|.+.| .+|-..-.+.+|++ .++..|++|+|.+++.+.++.+.
T Consensus 411 ~~~~~~L~~~g-----I~~e~~~~~~i~~~-~s~~~T~edid~li~aL~ei~r~ 458 (462)
T d1c4ka2 411 TIVANYLRDHG-----IIPEKSDLNSILFL-MTPAETPAKMNNLITQLLQLQRL 458 (462)
T ss_dssp HHHHHHHHHTT-----CCCSEECSSEEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-----CeeeccCCCeEEEE-ecCCCCHHHHHHHHHHHHHHHHH
Confidence 44555555555 34433334667766 67889999999999999988653
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]
Probab=84.96 E-value=0.25 Score=36.04 Aligned_cols=48 Identities=21% Similarity=0.195 Sum_probs=35.4
Q ss_pred HHhhccccceeecCCCCC-----CCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 33 RMMKSGSMMITYQPIHAL-----PNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 33 rM~~~Gs~MV~YqPl~~~-----~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
|.+..|+.+.+++|..+. .++-|+.+.....|+++||++++-|+++-+
T Consensus 377 r~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~ 429 (456)
T d1c7ga_ 377 RSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQ 429 (456)
T ss_dssp ECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHT
T ss_pred eecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHh
Confidence 345678888899886422 356787765445699999999999998754
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]
Probab=83.53 E-value=0.27 Score=34.90 Aligned_cols=45 Identities=18% Similarity=0.476 Sum_probs=31.2
Q ss_pred hccccceeecCCCC-----CCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 36 KSGSMMITYQPIHA-----LPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 36 ~~Gs~MV~YqPl~~-----~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
+.|..+.+++|..+ ..+.-|+.+.....|+++||++++.|+++-+
T Consensus 391 ~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~ 440 (467)
T d2v1pa1 391 EIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_dssp EESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence 44555666666532 2467886554445699999999999998754
>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]
Probab=83.36 E-value=1 Score=30.39 Aligned_cols=52 Identities=10% Similarity=0.195 Sum_probs=36.4
Q ss_pred hhhhhcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHH
Q psy2616 20 SSSSLQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIE 76 (82)
Q Consensus 20 ~~kL~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIe 76 (82)
|-++. -+..+.+++.++|=+...+....+.+||+|+.+. |.++++.+++.+.
T Consensus 299 ~~~~~-~~~~~~~~L~~~gIlvr~~~~~~~~~~~lRisig----t~ee~~~~l~aLk 350 (354)
T d1fg7a_ 299 LARFK-ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG----TREESQRVIDALR 350 (354)
T ss_dssp EEEET-THHHHHHHHHHTTEECEECTTSTTCTTEEEEECC----CHHHHHHHHHHHH
T ss_pred EEeCC-CHHHHHHHHHHCCcEEecCCCCCCCCCEEEEEeC----CHHHHHHHHHHHh
Confidence 44443 2456778899999555455444456799997653 6788999998875
>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]
Probab=82.47 E-value=1.2 Score=29.92 Aligned_cols=55 Identities=4% Similarity=0.186 Sum_probs=36.4
Q ss_pred hhhhhcchHHHHHHHhhccccceeecCCC-CCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 20 SSSSLQVAPKIKERMMKSGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 20 ~~kL~kVap~IKerM~~~Gs~MV~YqPl~-~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
|-++.+=+..+.+++.++|-+...-..-+ ..++|+|+.+. +.+++|.+++.++++
T Consensus 299 ~~~~~~~~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~----~~~e~~~li~aL~~i 354 (355)
T d1lc5a_ 299 LLRCEREDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR----SAAQNERLLAALRNV 354 (355)
T ss_dssp EEEESCTTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC----CHHHHHHHHHHHHHh
Confidence 44444444557788999995544322211 23689997653 689999999998876
>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]
Probab=82.34 E-value=0.85 Score=31.14 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=32.6
Q ss_pred HHHHHHHhhccccce---eecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 28 PKIKERMMKSGSMMI---TYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 28 p~IKerM~~~Gs~MV---~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
-.+.+++.++|=+.+ +|.+..+.+++||+.++. ++.++++..++-|.+.
T Consensus 344 ~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~--~~~~~l~~al~rl~~~ 395 (403)
T d1wsta1 344 KLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTY--VPEETIREGVRRLAET 395 (403)
T ss_dssp TTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecC--CCHHHHHHHHHHHHHH
Confidence 345677888883333 466666667999988744 4678888776665543
>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]
Probab=81.87 E-value=1.1 Score=30.18 Aligned_cols=47 Identities=13% Similarity=0.296 Sum_probs=33.5
Q ss_pred HHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
..+.++|-+.| ..|.- ...++..|+.+ ..-.|.+|||.+|+.|.++|
T Consensus 334 ~~i~~~L~~~g-i~v~~---~~~~~~lRis~-~~~nt~edid~ll~~l~e~~ 380 (381)
T d1elua_ 334 RAIVQKLEEQR-IYLRT---IADPDCIRACC-HYITDEEEINHLLARLADFG 380 (381)
T ss_dssp HHHHHHHHHTT-EECEE---ETTTTEEEEEC-CTTCCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCC-cEEEe---cCCCCEEEEec-CCCCCHHHHHHHHHHHHhhC
Confidence 45667777788 33321 13468899764 34568999999999999887