Psyllid ID: psy2649
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1637 | ||||||
| 157134856 | 4545 | dynein heavy chain [Aedes aegypti] gi|10 | 0.968 | 0.348 | 0.585 | 0.0 | |
| 383866400 | 4460 | PREDICTED: dynein beta chain, ciliary-li | 0.966 | 0.354 | 0.581 | 0.0 | |
| 328700120 | 3854 | PREDICTED: dynein beta chain, ciliary-li | 0.967 | 0.411 | 0.584 | 0.0 | |
| 322788437 | 3091 | hypothetical protein SINV_80910 [Solenop | 0.966 | 0.511 | 0.583 | 0.0 | |
| 307168036 | 4455 | Dynein beta chain, ciliary [Camponotus f | 0.966 | 0.355 | 0.582 | 0.0 | |
| 170031290 | 4543 | dynein heavy chain [Culex quinquefasciat | 0.969 | 0.349 | 0.585 | 0.0 | |
| 328707060 | 4331 | PREDICTED: dynein heavy chain 17, axonem | 0.967 | 0.365 | 0.585 | 0.0 | |
| 157120024 | 4472 | dynein heavy chain [Aedes aegypti] gi|10 | 0.966 | 0.353 | 0.579 | 0.0 | |
| 350397082 | 4459 | PREDICTED: dynein beta chain, ciliary-li | 0.966 | 0.354 | 0.579 | 0.0 | |
| 332027796 | 4463 | Dynein beta chain, ciliary [Acromyrmex e | 0.962 | 0.353 | 0.584 | 0.0 |
| >gi|157134856|ref|XP_001656476.1| dynein heavy chain [Aedes aegypti] gi|108881336|gb|EAT45561.1| AAEL003155-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 2091 bits (5417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1047/1787 (58%), Positives = 1271/1787 (71%), Gaps = 201/1787 (11%)
Query: 3 ENEYMDKPLIYCHFVECVGDPKYMKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMS 62
EN+ P+IYCHF + + DPKYM + W +L+K L E ++YN+++ +MNLVLFEDAMS
Sbjct: 2805 ENKVFSNPIIYCHFADGLVDPKYMPVASWESLNKTLEEAQSNYNDMIGAMNLVLFEDAMS 2864
Query: 63 HICRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLA 122
H+CRINRI+E PRGNALL+GVGGSGKQSLSRL+AFIS LE QIQL+K YGIPDLK DLA
Sbjct: 2865 HVCRINRILEGPRGNALLIGVGGSGKQSLSRLAAFISGLEVSQIQLRKGYGIPDLKADLA 2924
Query: 123 SLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVPDLFTDDEIENIVNNIAAEP 182
LY+KAG+KN MFLMTD+QVA+E FLV+IND+LASGE+P+LF +DEI+NIVN A
Sbjct: 2925 VLYMKAGVKNVPCMFLMTDAQVAEESFLVLINDLLASGEIPELFPEDEIDNIVN--ALRN 2982
Query: 183 EIPLTADLDP--------LTMLTDDATIAFWNNEGLPNDRMSTENATILVNS------QR 228
E+ LD + + I + R+ LVN
Sbjct: 2983 EVKQLGILDTKENCWKYFIEKVRKSLKIVLCFSPVGSTLRVRARKFPALVNCTAINWFHE 3042
Query: 229 WP--------------LMIDPQEVLRKPCAVFMAYVHSSVNQISVSYLLNERRYNYTTPK 274
WP + + P++++ +P AVFMAYVH +VN++S YL NERRYNYTTPK
Sbjct: 3043 WPKTALESVSNRFLAEVDVMPRDLV-EPVAVFMAYVHGTVNEMSQIYLQNERRYNYTTPK 3101
Query: 275 SFLEQIDLYAKLLKIKFDDNKSGITRFQNGLQKLVSLGN--------------------- 313
SFLE I LY+K +K K + + R ++G+ KL
Sbjct: 3102 SFLELIALYSKFVKEKHTELNDRVHRLESGILKLAECAEQVDSLQVQLAEQEVVLKKKNQ 3161
Query: 314 -------------------------EEKKVRAIEEDVSYKQKVCAEDLEKAEPALVAAQE 348
EEKKVR I+EDV K+K+C EDL KAEPAL+AAQ+
Sbjct: 3162 AADILIKDVGAKNETVQKEKNFAAEEEKKVRVIQEDVGAKKKICEEDLRKAEPALMAAQQ 3221
Query: 349 ALDTLDKNNLTELKALKAPPQGVIAVCDAVAVLMASKKGKVPKDLGWKGSQL-------- 400
ALDTLDKNNLTELK+ +PP+ V+ VC AV VL S +GK+PKD WK ++
Sbjct: 3222 ALDTLDKNNLTELKSFGSPPEQVVKVCAAVLVLF-SPRGKIPKDRSWKSCKMMMNKVDVF 3280
Query: 401 ----------------------------------KALKAPPQGLCAWVINIITFYNVWTF 426
+A A GLCAWVINI FY V+
Sbjct: 3281 LNDLLYYDKEHIQPDVIKALQEYLKDPEFDPEKIRAKSAAAAGLCAWVINIHKFYQVYLV 3340
Query: 427 VEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEEC 486
VEPK++AL A AEL AA KL +L A+I LE L + F+ A+ EK CQ++A++
Sbjct: 3341 VEPKQRALDEAEAELKAAQDKLIDLTARINELEDQLGVIQADFNDALAEKQKCQDEADKT 3400
Query: 487 AEKIDLADRLVNGLASENVRWKDSVLGLQQSALTLPGDILLVTAFVSYVGCFTRSYRLDL 546
A IDLA RLVNGLASENVRW++S+ L+ +TLPGD+LL+ F+SYVGCFTR YR++L
Sbjct: 3401 AFTIDLAHRLVNGLASENVRWRESIAQLKGQTVTLPGDVLLIACFISYVGCFTRRYRVEL 3460
Query: 547 LNKFWLPTIKKSK---------------------IDWFHE-WPQEALESVSLKFLVKSCE 584
K W+PT + SK W +E P + + S + L S
Sbjct: 3461 QEKMWIPTFRLSKPAIPFTEGVDPLNLIVDDAVIASWNNEGLPSDRMSSENAAILTYSSR 3520
Query: 585 ---------------SHRYGNKLTVIRLGQKRVMDQIEKAVMSGFVLLIENIGESVDPVL 629
+YGN LTV+RL + +D IE+ V++G VLLIENIGE+VD VL
Sbjct: 3521 WPLMIDPQLQGIKWIKQKYGNDLTVLRLTARGYLDVIERCVVNGSVLLIENIGETVDAVL 3580
Query: 630 DNLIGRNLIRKGKVVKIGEKEIDYNPNFKLILHTKLANPHYKPEMQAQTTLINFTVTRDG 689
D L+GR L++KG+ +++GEKEIDYNP F+LIL TKLANPHYKPEMQAQTTLINFTVTRDG
Sbjct: 3581 DPLLGRMLVKKGRCLRMGEKEIDYNPKFQLILQTKLANPHYKPEMQAQTTLINFTVTRDG 3640
Query: 690 LEDQLLAEVVKFERPDLELLKANLTKEQNLFKITLKGLEDDLLMRLSSSGGDVLSDKNLV 749
LE+QLLAEVVK ERPDLE KA+LT +QN FKITLK LEDDLL RLSS+G +VL D +LV
Sbjct: 3641 LEEQLLAEVVKAERPDLEQQKADLTMQQNTFKITLKMLEDDLLSRLSSAGENVLEDASLV 3700
Query: 750 LNLEKSKKTAKEIEIKVKEGKKTAKKIDEAREQYRPAAERASVIYFIMNELFKINPIYQF 809
+NLEK+KKTA E+E+KV+EGKKT++ ID ARE YRPAAERAS++YFI+N+L+KINPIYQF
Sbjct: 3701 INLEKTKKTAAEVEVKVREGKKTSEMIDVARESYRPAAERASILYFILNDLYKINPIYQF 3760
Query: 810 SLKAFTVVFHNAMTKAKKSDNLKGRVANLVESITFMTFQYTSRGLFERDKLIFMAQMTIQ 869
SLKAFT VF +A+ ++ LK RV NL++SITF YTSRGLFE+DKLIFMAQM IQ
Sbjct: 3761 SLKAFTTVFKDAIAGTPPAEKLKDRVFNLIDSITFAVHMYTSRGLFEKDKLIFMAQMAIQ 3820
Query: 870 VKSLCMGDQHYHVLQQPKRKALAAANAELAAASQKLAELKAKIAISMMKKEIAREELDFL 929
I ++ KEI ELDFL
Sbjct: 3821 --------------------------------------------ILLVAKEIDPAELDFL 3836
Query: 930 LRFPFQPGVSSPVDFLTNTLWGGVRALSNLEEFKNLDKDIEAAAKRWKKYIEGETPEKDK 989
LRFP+ P ++SP +FLTN WGG++ALSN++EF++LDKDIE +AKRW+K IE E PE++K
Sbjct: 3837 LRFPYTPNLTSPFEFLTNAGWGGIKALSNMDEFRSLDKDIEGSAKRWRKLIESECPEREK 3896
Query: 990 LPQEWKNKSALQRLCIMRCLRPDRMTYAVRSFVEEKMGDRYVNARAIEFEQSYRESSSTT 1049
+P EWKNK+ALQRLCIMRCLRPDRMTYAVR+FVEEK+G +YV AR +EF++S+RE+SS+T
Sbjct: 3897 MPGEWKNKNALQRLCIMRCLRPDRMTYAVRAFVEEKLGAKYVEARMVEFDKSFRETSSST 3956
Query: 1050 PIFFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVSLGQGQEVIAEETIQIASTKGHWAI 1109
P+FFILSPGVDP +DVE +G+KM F+TD N +NVSLGQGQEV+AE+ I AS +GHW I
Sbjct: 3957 PVFFILSPGVDPLQDVEKLGKKMRFSTDHGNFYNVSLGQGQEVVAEKAIDDASREGHWVI 4016
Query: 1110 LQNVHLVKNWLPTLDKKMEASFEKPHKNYRLFISAEPASDPEYHIIPQGVLDSSIKITNE 1169
LQN+HLV WLPTL+KKMEA+ E ++NYRLFISAEPA PEYHIIPQG+L+S+IKITNE
Sbjct: 4017 LQNIHLVAKWLPTLEKKMEATQEDSNENYRLFISAEPAPSPEYHIIPQGILESAIKITNE 4076
Query: 1170 PPTGMQANLHKALDNFTQEDLEMCSKEAEYKSILFALCYFHAVVAERRKFGPQGWNRSYP 1229
PPTGM AN+HKALDNF QE LEMC KEAE+K+ILF+LCYFHAVVAERRKFGPQGWNR YP
Sbjct: 4077 PPTGMLANIHKALDNFNQETLEMCGKEAEFKAILFSLCYFHAVVAERRKFGPQGWNRVYP 4136
Query: 1230 FNVGDLTISSLVLYNYLEANNNVPWEDLRYLFGEIMYGGHITDDWDRRLCRTYLEEYMNP 1289
FNVGDLTIS VLYNYLEANN VPWEDLRYLFGEIMYGGHITDDWDRRLCRTYLEE M P
Sbjct: 4137 FNVGDLTISVYVLYNYLEANNRVPWEDLRYLFGEIMYGGHITDDWDRRLCRTYLEELMQP 4196
Query: 1290 ELLEGETKLAPGFPAPPNQDYQGYHTYIDESLPPESPILYGLHPNAEIGFLTTQAENVFK 1349
EL++G+ L GFPAPPN DY GYH YID++LP ESP LYGLHPNAEIGFLTT +E +FK
Sbjct: 4197 ELVDGDLNLCTGFPAPPNLDYAGYHNYIDDNLPVESPYLYGLHPNAEIGFLTTLSEQLFK 4256
Query: 1350 IIFELQPRDTAAAQGSGVTREEKVRQVLDEILDKCPDAFNIKDMMGRVEDRTPYIIVAFQ 1409
IFELQPRD+ AA GS V+RE+ V+ ++++ DK P+ FN+ D+M RVEDRTP++IVAFQ
Sbjct: 4257 TIFELQPRDSGAASGSTVSREDVVKTIIEDFSDKLPEEFNMADLMARVEDRTPFVIVAFQ 4316
Query: 1410 ECERMNILMSEIKRSLKELNLGLKGELTITTDMEALEYSIFMDTVPPSWEKRAYPSMLGL 1469
ECERMNIL+ E+KRSL+EL LGLKGELTIT+DME LE S+F D VP +W KRAYPSM GL
Sbjct: 4317 ECERMNILVREMKRSLRELMLGLKGELTITSDMENLEASLFFDAVPENWTKRAYPSMFGL 4376
Query: 1470 GGWFADLMLRLKELENWVGDFQLPSSVWLAGFFNPQSFLTAIMQSTARKNEWPLDKMCLQ 1529
WFADL +R+KELE+W DF LPSSVWLAGFFNPQSFLTAIMQ TARKNEWPLDKMCL
Sbjct: 4377 QSWFADLTIRIKELESWSNDFNLPSSVWLAGFFNPQSFLTAIMQQTARKNEWPLDKMCLS 4436
Query: 1530 CDVTKKQREDFTQAPRDGAYVNGLYMEGARWDIALGVISDAKLKELFPMMPVIYIKAITQ 1589
CDVTKK +ED + PR+GAYVNGLYMEGARWD+ +G I+ ++LKELFP MPVI+IKAITQ
Sbjct: 4437 CDVTKKFKEDISAPPREGAYVNGLYMEGARWDLNIGSIASSQLKELFPQMPVIFIKAITQ 4496
Query: 1590 DKQDLRNMYECPVYKTRQRGPNYVWTFNLKTKEKPAKWTMAGVALLF 1636
DKQ+ +N+YECPVYKTR RGP YVWTFNLK+KE PAKWT+ GV LL
Sbjct: 4497 DKQETKNIYECPVYKTRDRGPTYVWTFNLKSKENPAKWTLGGVCLLL 4543
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383866400|ref|XP_003708658.1| PREDICTED: dynein beta chain, ciliary-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
| >gi|328700120|ref|XP_001950250.2| PREDICTED: dynein beta chain, ciliary-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
| >gi|322788437|gb|EFZ14108.1| hypothetical protein SINV_80910 [Solenopsis invicta] | Back alignment and taxonomy information |
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| >gi|307168036|gb|EFN61360.1| Dynein beta chain, ciliary [Camponotus floridanus] | Back alignment and taxonomy information |
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| >gi|170031290|ref|XP_001843519.1| dynein heavy chain [Culex quinquefasciatus] gi|167869546|gb|EDS32929.1| dynein heavy chain [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
| >gi|328707060|ref|XP_001947345.2| PREDICTED: dynein heavy chain 17, axonemal-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
| >gi|157120024|ref|XP_001653493.1| dynein heavy chain [Aedes aegypti] gi|108875107|gb|EAT39332.1| AAEL008855-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
| >gi|350397082|ref|XP_003484764.1| PREDICTED: dynein beta chain, ciliary-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
| >gi|332027796|gb|EGI67861.1| Dynein beta chain, ciliary [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1637 | ||||||
| FB|FBgn0013812 | 4486 | Dhc93AB "Dynein heavy chain at | 0.441 | 0.160 | 0.698 | 0.0 | |
| UNIPROTKB|E1BLB4 | 4392 | LOC788092 "Uncharacterized pro | 0.439 | 0.163 | 0.688 | 0.0 | |
| UNIPROTKB|F1PN88 | 4427 | DNAH17 "Uncharacterized protei | 0.439 | 0.162 | 0.687 | 0.0 | |
| UNIPROTKB|F1NI20 | 4382 | DNAH9 "Uncharacterized protein | 0.437 | 0.163 | 0.684 | 0.0 | |
| UNIPROTKB|K7EK91 | 4457 | DNAH17 "Dynein heavy chain 17, | 0.439 | 0.161 | 0.681 | 0.0 | |
| UNIPROTKB|Q9NYC9 | 4486 | DNAH9 "Dynein heavy chain 9, a | 0.441 | 0.160 | 0.671 | 0.0 | |
| UNIPROTKB|F1NJ57 | 4370 | DNAH9 "Uncharacterized protein | 0.436 | 0.163 | 0.677 | 0.0 | |
| UNIPROTKB|F1PDR4 | 4485 | DNAH9 "Uncharacterized protein | 0.441 | 0.160 | 0.677 | 0.0 | |
| UNIPROTKB|F1NI32 | 4384 | DNAH9 "Uncharacterized protein | 0.441 | 0.164 | 0.668 | 0.0 | |
| UNIPROTKB|F1NVK1 | 4352 | DNAH9 "Uncharacterized protein | 0.441 | 0.165 | 0.668 | 0.0 |
| FB|FBgn0013812 Dhc93AB "Dynein heavy chain at 93AB" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2797 (989.7 bits), Expect = 0., Sum P(5) = 0.
Identities = 505/723 (69%), Positives = 601/723 (83%)
Query: 914 ISMMKKEIAREELDFLLRFPFQPGVSSPVDFLTNTLWGGVRALSNLEEFKNLDKDIEAAA 973
I +M +E+ ELDFLLRFP +P V+SPVDFLTN WGG+ +L++ +EF+NLD+DIE ++
Sbjct: 3761 ILLMNEEVTSAELDFLLRFPIKPHVTSPVDFLTNQSWGGICSLASKDEFRNLDRDIETSS 3820
Query: 974 KRWKKYIEGETPEKDKLPQEWKNKSALQRLCIMRCLRPDRMTYAVRSFVEEKMGDRYVNA 1033
KRWKK +E E PEK+K PQEWKNK+ALQRLC++R LRPDRMTYA+ F+EEK+G +YV +
Sbjct: 3821 KRWKKLVESELPEKEKFPQEWKNKTALQRLCMIRALRPDRMTYALADFIEEKLGSKYVES 3880
Query: 1034 RAIEFEQSYRESSSTTPIFFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVSLGQGQEVI 1093
RA+EF +SY E+S +TPIFFILSPGV+P +DVEA+G++MGF+ DL N HNVSLGQGQE I
Sbjct: 3881 RAMEFAKSYEEASPSTPIFFILSPGVNPLKDVEALGKQMGFSMDLGNFHNVSLGQGQEAI 3940
Query: 1094 AEETIQIASTKGHWAILQNVHLVKNWLPTLDKKMEASFEKPHKNYRLFISAEPASDPEYH 1153
AE + A+ GHW +LQN+HLV+ WLP L+KK+E E H +YR+F+SAEPAS P H
Sbjct: 3941 AEAAMDTAAKHGHWVVLQNIHLVRKWLPVLEKKLEYYAEDSHPDYRMFLSAEPASTPSAH 4000
Query: 1154 IIPQGVLDSSIKITNEPPTGMQANLHKALDNFTQEDLEMCSKEAEYKSILFALCYFHAVV 1213
IIPQG+L+SSIKITNEPPTGM ANLHKALDNFTQE LEM KEAE+K+ILF+LCYFHAVV
Sbjct: 4001 IIPQGILESSIKITNEPPTGMLANLHKALDNFTQETLEMSGKEAEFKAILFSLCYFHAVV 4060
Query: 1214 AERRKFGPQGWNRSYPFNVGDLTISSLVLYNYLEANNNVPWEDLRYLFGEIMYGGHITDD 1273
AERRKFGPQGWN+ YPFNVGDL IS VLYNYLEAN VPWEDLRYLFGEIMYGGHITDD
Sbjct: 4061 AERRKFGPQGWNKIYPFNVGDLNISVSVLYNYLEANAKVPWEDLRYLFGEIMYGGHITDD 4120
Query: 1274 WDRRLCRTYLEEYMNPELLEGETKLAPGFPAPPNQDYQGYHTYIDESLPPESPILYGLHP 1333
WDRRLC TYLEEYM P+L++GE LAP FPAPPN DYQGYHTY+DE +P ESP LYGLHP
Sbjct: 4121 WDRRLCITYLEEYMQPDLVDGELFLAPSFPAPPNTDYQGYHTYVDEMMPAESPYLYGLHP 4180
Query: 1334 NAEIGFLTTQAENVFKIIFELQPRDTAAAQGSGVTREEKVRQVLDEILDKCPDAFNIKDM 1393
NAEIGFLTT+AEN+F+ +FE+QPRD A G+ VTRE+KV+Q++DEI++K P+ FN+ ++
Sbjct: 4181 NAEIGFLTTRAENIFRTVFEMQPRDAGAGGGATVTREDKVKQIVDEIIEKLPEEFNMVEI 4240
Query: 1394 MGRVEDRTPYIIVAFQECERMNILMSEIKRSXXXXXXXXXXXXTITTDMEALEYSIFMDT 1453
M +VE+RTPY+IVAFQECERMN L SE+KRS TIT+DME LE S+F+D
Sbjct: 4241 MNKVEERTPYVIVAFQECERMNFLTSEMKRSLKELDLGLKGELTITSDMEVLENSLFLDQ 4300
Query: 1454 VPPSWEKRAYPSMLGLGGWFADLMLRLKELENWVGDFQLPSSVWLAGFFNPQSFLTAIMQ 1513
VPP W +RAYPS+LGL WF DL LRL+ELE W DF LPS VWLAGFFNPQS LTAIMQ
Sbjct: 4301 VPPIWTQRAYPSLLGLNNWFIDLCLRLRELETWSTDFVLPSCVWLAGFFNPQSLLTAIMQ 4360
Query: 1514 STARKNEWPLDKMCLQCDVTKKQREDFTQAPRDGAYVNGLYMEGARWDIALGVISDAKLK 1573
STAR+N+ PLDKMCLQCDVTKKQ+E+FT APRDG V+G++MEGARWDI G+I +++LK
Sbjct: 4361 STARRNDLPLDKMCLQCDVTKKQKEEFTTAPRDGCCVHGIFMEGARWDIQQGIIMESRLK 4420
Query: 1574 ELFPMMPVIYIKAITQDKQDLRNMYECPVYKTRQRGPN-YVWTFNLKTKEKPAKWTMAGV 1632
EL+P MPVI I+AITQDKQDLRNMYECPVYKTR RGP YV NLKTK+KP KW +AGV
Sbjct: 4421 ELYPSMPVINIRAITQDKQDLRNMYECPVYKTRTRGPTTYVSNLNLKTKDKPGKWILAGV 4480
Query: 1633 ALL 1635
ALL
Sbjct: 4481 ALL 4483
|
|
| UNIPROTKB|E1BLB4 LOC788092 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PN88 DNAH17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NI20 DNAH9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|K7EK91 DNAH17 "Dynein heavy chain 17, axonemal" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9NYC9 DNAH9 "Dynein heavy chain 9, axonemal" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NJ57 DNAH9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PDR4 DNAH9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NI32 DNAH9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NVK1 DNAH9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1637 | |||
| pfam03028 | 706 | pfam03028, Dynein_heavy, Dynein heavy chain and re | 0.0 | |
| pfam12780 | 268 | pfam12780, AAA_8, P-loop containing dynein motor r | 8e-91 | |
| pfam12777 | 344 | pfam12777, MT, Microtubule-binding stalk of dynein | 2e-83 | |
| pfam12781 | 228 | pfam12781, AAA_9, ATP-binding dynein motor region | 3e-79 | |
| COG5245 | 3164 | COG5245, DYN1, Dynein, heavy chain [Cytoskeleton] | 4e-31 | |
| pfam12781 | 228 | pfam12781, AAA_9, ATP-binding dynein motor region | 6e-18 | |
| COG5245 | 3164 | COG5245, DYN1, Dynein, heavy chain [Cytoskeleton] | 3e-09 | |
| pfam12780 | 268 | pfam12780, AAA_8, P-loop containing dynein motor r | 1e-05 | |
| TIGR04211 | 198 | TIGR04211, SH3_and_anchor, SH3 domain protein | 1e-04 | |
| pfam12777 | 344 | pfam12777, MT, Microtubule-binding stalk of dynein | 0.002 |
| >gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein motor | Back alignment and domain information |
|---|
Score = 1064 bits (2754), Expect = 0.0
Identities = 423/713 (59%), Positives = 532/713 (74%), Gaps = 20/713 (2%)
Query: 934 FQPGVSSPV-DFLTNTLWGGVRALSNLEEFKNLDKDIEAAAKRWKKYIEGETPEKDKLPQ 992
+ V +P D+LT WG + LS LEEF+ LD DIE AKRWKK+ + E PE++KLPQ
Sbjct: 1 IESTVPNPKLDWLTVQQWGSICRLSELEEFRGLDDDIEKNAKRWKKWYDSEAPEEEKLPQ 60
Query: 993 EWK-NKSALQRLCIMRCLRPDRMTYAVRSFVEEKMGDRYVNARAIEFEQSYRESSSTTPI 1051
EWK KSA Q+L ++R LRPDRMTYA R+FV EK+G+++V + ++ + Y ESS +TPI
Sbjct: 61 EWKDRKSAFQKLLLLRALRPDRMTYAARNFVSEKLGEKFVEPQPLDLSKIYEESSPSTPI 120
Query: 1052 FFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVSLGQGQEVIAEETIQIASTKGHWAILQ 1111
FFILSPGVDP++DVE + +KMGF + H+VSLGQGQ IAE+ I+ A+ GHW +LQ
Sbjct: 121 FFILSPGVDPSKDVEKLAKKMGFG---KKFHSVSLGQGQGPIAEKAIETAAKSGHWVMLQ 177
Query: 1112 NVHLVKNWLPTLDKKMEASFEKPHKNYRLFISAEPASDPEYHIIPQGVLDSSIKITNEPP 1171
N+HL +WLPTL+KK+E+ H ++RLF++AEPA IP G+L +SIKITNEPP
Sbjct: 178 NIHLAPSWLPTLEKKLESLTPGSHPDFRLFLTAEPAPS-----IPIGLLQNSIKITNEPP 232
Query: 1172 TGMQANLHKALDNFTQEDLEMCSKEAEYKSILFALCYFHAVVAERRKFGPQGWNRSYPFN 1231
TG++ANL +AL +FTQE LEMC K AE+K ILF LC+FHAVV ERRKFGP GWN+SY FN
Sbjct: 233 TGLKANLLRALSSFTQETLEMCKKPAEFKRILFLLCFFHAVVQERRKFGPLGWNKSYEFN 292
Query: 1232 VGDLTISSLVLYNYLEANN--NVPWEDLRYLFGEIMYGGHITDDWDRRLCRTYLEEYMNP 1289
GDL IS VL NYL+AN VPWEDLRYLFGEIMYGG ITDDWDRRL RTYLEE+ P
Sbjct: 293 EGDLRISLDVLDNYLDANAPDKVPWEDLRYLFGEIMYGGRITDDWDRRLLRTYLEEFFTP 352
Query: 1290 ELLEGETKLAP---GFPAPPNQDYQGYHTYIDESLPPES-PILYGLHPNAEIGFLTTQAE 1345
L + E +LAP GF PP DY+GY YI+E LPPES P YGLHPNAEIGFLT Q E
Sbjct: 353 RLFDPELELAPGDLGFAVPPGTDYEGYLQYIEE-LPPESSPEWYGLHPNAEIGFLTQQTE 411
Query: 1346 NVFKIIFELQPRDTAAAQGSGVTREEKVRQVLDEILDKCPDAFNIKDMMGRV--EDRTPY 1403
+ + + ELQPR+ + GSGV+REE V+QVL +IL+K P F I+++ + E + P
Sbjct: 412 KLIRTLLELQPREAGGSGGSGVSREEVVKQVLRDILEKLPKLFPIEEIKLKRTEEIKDPL 471
Query: 1404 IIVAFQECERMNILMSEIKRSLKELNLGLKGELTITTDMEALEYSIFMDTVPPSWEKRAY 1463
V FQE ERMN L+ EI+RSLKEL+LGLKGELT+T D+E L ++F VP SW K AY
Sbjct: 472 FRVLFQEIERMNKLLKEIRRSLKELDLGLKGELTMTNDLEDLAKALFKGRVPASWAKLAY 531
Query: 1464 PSMLGLGGWFADLMLRLKELENWVGDFQLPSSVWLAGFFNPQSFLTAIMQSTARKNEWPL 1523
PS+ LG W DL+ R+++L++W DF P +VWL+GFFNPQSFLTAIMQS ARKN+WPL
Sbjct: 532 PSLKPLGSWVTDLLRRIRQLQDWTEDFGKPKTVWLSGFFNPQSFLTAIMQSVARKNKWPL 591
Query: 1524 DKMCLQCDVTKKQREDFTQAPRDGAYVNGLYMEGARWDIALGVISDAKLKELFPMMPVIY 1583
DK+CLQ DVTKK++E+F APRDG YV+GL++EGARWD G++ +++ KELF MPVI+
Sbjct: 592 DKLCLQTDVTKKEKEEFDSAPRDGFYVHGLFLEGARWDGQNGLLLESRPKELFSPMPVIW 651
Query: 1584 IKAITQDKQDLRNMYECPVYKTRQRGP-NYVWTFNLKTKEKPAKWTMAGVALL 1635
+KA+ DKQ+ +++YECPVYKT RG YV+TF LKTKE P+KW +AGVALL
Sbjct: 652 VKAVPADKQEEKSVYECPVYKTETRGGTTYVFTFLLKTKEPPSKWILAGVALL 704
|
This family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved in cilia and flagella movement. The dynein subunit consists of at least two heavy chains and a number of intermediate and light chains. The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This C-terminal domain carries the D6 region of the dynein motor where the P-loop has been lost in evolution but the general structure of a potential ATP binding site appears to be retained. Length = 706 |
| >gnl|CDD|193256 pfam12780, AAA_8, P-loop containing dynein motor region D4 | Back alignment and domain information |
|---|
| >gnl|CDD|193253 pfam12777, MT, Microtubule-binding stalk of dynein motor | Back alignment and domain information |
|---|
| >gnl|CDD|193257 pfam12781, AAA_9, ATP-binding dynein motor region D5 | Back alignment and domain information |
|---|
| >gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|193257 pfam12781, AAA_9, ATP-binding dynein motor region D5 | Back alignment and domain information |
|---|
| >gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|193256 pfam12780, AAA_8, P-loop containing dynein motor region D4 | Back alignment and domain information |
|---|
| >gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein | Back alignment and domain information |
|---|
| >gnl|CDD|193253 pfam12777, MT, Microtubule-binding stalk of dynein motor | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1637 | |||
| PF03028 | 707 | Dynein_heavy: Dynein heavy chain and region D6 of | 100.0 | |
| KOG3595|consensus | 1395 | 100.0 | ||
| COG5245 | 3164 | DYN1 Dynein, heavy chain [Cytoskeleton] | 100.0 | |
| PF12780 | 268 | AAA_8: P-loop containing dynein motor region D4; I | 100.0 | |
| PF12777 | 344 | MT: Microtubule-binding stalk of dynein motor; Int | 100.0 | |
| PF12781 | 228 | AAA_9: ATP-binding dynein motor region D5; PDB: 3V | 100.0 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 97.07 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.01 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 96.77 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 96.75 | |
| KOG1969|consensus | 877 | 96.73 | ||
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 96.35 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 96.34 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 96.26 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 96.1 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 95.97 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 95.88 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 95.82 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 95.81 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 95.76 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 95.67 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 95.61 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 95.58 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 95.51 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 95.48 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 95.48 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 95.43 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 95.42 | |
| KOG0250|consensus | 1074 | 95.38 | ||
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 95.36 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 95.36 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 95.36 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 95.25 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 95.22 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 95.18 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 95.02 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 94.95 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 94.92 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 94.9 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 94.9 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 94.9 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 94.82 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 94.71 | |
| PF12781 | 228 | AAA_9: ATP-binding dynein motor region D5; PDB: 3V | 94.71 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 94.69 | |
| COG5245 | 3164 | DYN1 Dynein, heavy chain [Cytoskeleton] | 94.65 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 94.61 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 94.61 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 94.54 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 94.44 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 94.25 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 94.23 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 94.19 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 94.16 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 94.04 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 94.03 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 94.0 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 94.0 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 94.0 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 93.97 | |
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 93.96 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 93.95 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 93.68 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 93.54 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 93.39 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 93.38 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 93.29 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 93.26 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 93.23 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 93.19 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 93.15 | |
| KOG0730|consensus | 693 | 93.1 | ||
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 93.02 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 92.95 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 92.82 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 92.79 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 92.76 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 92.69 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 92.67 | |
| KOG2028|consensus | 554 | 92.67 | ||
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 92.62 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 92.62 | |
| KOG0994|consensus | 1758 | 92.57 | ||
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 92.55 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 92.37 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 92.27 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 92.18 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 92.07 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 92.06 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 92.05 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 91.95 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 91.85 | |
| KOG0733|consensus | 802 | 91.75 | ||
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 91.54 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 91.26 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 91.22 | |
| PHA02244 | 383 | ATPase-like protein | 91.12 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 91.03 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 91.02 | |
| KOG0743|consensus | 457 | 90.97 | ||
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 90.91 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 90.89 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 90.87 | |
| KOG0738|consensus | 491 | 90.64 | ||
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 90.27 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 90.07 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 90.02 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 89.9 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 89.87 | |
| PRK13948 | 182 | shikimate kinase; Provisional | 89.76 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 89.67 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 89.66 | |
| PF03028 | 707 | Dynein_heavy: Dynein heavy chain and region D6 of | 89.48 | |
| KOG0733|consensus | 802 | 88.9 | ||
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 88.86 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 88.74 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 88.63 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 88.56 | |
| COG3074 | 79 | Uncharacterized protein conserved in bacteria [Fun | 88.52 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 88.46 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 88.26 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 87.98 | |
| PRK08154 | 309 | anaerobic benzoate catabolism transcriptional regu | 87.97 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 87.95 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 87.86 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 87.85 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 87.51 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 87.45 | |
| KOG0736|consensus | 953 | 87.43 | ||
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 87.41 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 87.4 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 87.24 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 87.09 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 87.07 | |
| PRK13947 | 171 | shikimate kinase; Provisional | 86.97 | |
| KOG3354|consensus | 191 | 86.95 | ||
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 86.93 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 86.86 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 86.74 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 86.69 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 86.61 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 86.54 | |
| PF13173 | 128 | AAA_14: AAA domain | 86.49 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 86.26 | |
| KOG0734|consensus | 752 | 86.13 | ||
| PRK15422 | 79 | septal ring assembly protein ZapB; Provisional | 85.98 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 85.77 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 85.75 | |
| PF12774 | 231 | AAA_6: Hydrolytic ATP binding site of dynein motor | 85.75 | |
| PRK13946 | 184 | shikimate kinase; Provisional | 85.62 | |
| PLN02199 | 303 | shikimate kinase | 85.39 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 85.33 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 85.29 | |
| KOG1029|consensus | 1118 | 85.28 | ||
| PRK05057 | 172 | aroK shikimate kinase I; Reviewed | 85.25 | |
| PRK11637 | 428 | AmiB activator; Provisional | 85.25 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 85.22 | |
| COG0703 | 172 | AroK Shikimate kinase [Amino acid transport and me | 85.19 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 85.17 | |
| KOG0731|consensus | 774 | 85.16 | ||
| CHL00181 | 287 | cbbX CbbX; Provisional | 85.13 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 84.76 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 84.44 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 83.88 | |
| PRK12377 | 248 | putative replication protein; Provisional | 83.62 | |
| PLN02165 | 334 | adenylate isopentenyltransferase | 83.29 | |
| PRK09087 | 226 | hypothetical protein; Validated | 83.28 | |
| PF06005 | 72 | DUF904: Protein of unknown function (DUF904); Inte | 83.21 | |
| PRK00131 | 175 | aroK shikimate kinase; Reviewed | 83.2 | |
| PRK03839 | 180 | putative kinase; Provisional | 82.91 | |
| PTZ00202 | 550 | tuzin; Provisional | 82.67 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 81.89 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 81.84 | |
| KOG0991|consensus | 333 | 81.76 | ||
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 81.52 | |
| PRK10884 | 206 | SH3 domain-containing protein; Provisional | 81.44 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 81.31 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 81.23 | |
| TIGR01313 | 163 | therm_gnt_kin carbohydrate kinase, thermoresistant | 81.2 | |
| PRK06217 | 183 | hypothetical protein; Validated | 81.17 | |
| cd00464 | 154 | SK Shikimate kinase (SK) is the fifth enzyme in th | 81.06 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 80.85 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 80.84 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 80.71 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 80.71 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 80.66 | |
| KOG0728|consensus | 404 | 80.55 | ||
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 80.47 | |
| KOG0739|consensus | 439 | 80.26 | ||
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 80.2 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 80.12 |
| >PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-132 Score=1303.66 Aligned_cols=691 Identities=42% Similarity=0.828 Sum_probs=521.6
Q ss_pred CcccccccccccccccccchhhhhccchhhHHHHHHHHhhhhcCCCCcCCCchhhc-cchHHHHHHHhhhcCCCchhHHH
Q psy2649 940 SPVDFLTNTLWGGVRALSNLEEFKNLDKDIEAAAKRWKKYIEGETPEKDKLPQEWK-NKSALQRLCIMRCLRPDRMTYAV 1018 (1637)
Q Consensus 940 ~~~~wl~~~~w~~i~~L~~l~~F~~l~~~~~~~~~~W~~~~~s~~pe~~~lp~~~~-~l~~fqklll~r~lrpdrl~~~~ 1018 (1637)
+.++|++++.|.+++.|+.+|.|.+|.++|..+.++|++|+++..||..++|..|. ++++|||+||+||+||||+..++
T Consensus 7 p~~~wl~~~~w~~i~~L~~l~~F~~l~~~~~~~~~~W~~~~~~~~pe~~~~P~~~~~~l~~fqklllir~lRpDrl~~~~ 86 (707)
T PF03028_consen 7 PIPSWLSDEQWQNICALSKLPSFKGLCESIESNPEEWKQWFESDSPEEEPLPSPWEENLTPFQKLLLIRALRPDRLIAAM 86 (707)
T ss_dssp GTTTS-HHHHHHHHHHHHC-GGGSSHHHHHHHTHHHHHHHC-SS-SS-----HHHHHHHHHHHHHHHHHHH-CCCHHHHH
T ss_pred CCcCcCCHHHHHHHHHHhCCcchHHHHHHHHhCHHHHHHHHcCCCcccccCChhhhhcccHHHHHHHHHHhCccHhHHHH
Confidence 34699999999999999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred HHHHHHhhcCccccccccchhhhhhccCCCCcEEEEeCCCCCCchhHHHhccccceeccCCCccccccCCchhHHHHhHH
Q psy2649 1019 RSFVEEKMGDRYVNARAIEFEQSYRESSSTTPIFFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVSLGQGQEVIAEETI 1098 (1637)
Q Consensus 1019 ~~~v~~~lg~~~~~~~~~~l~~~~~~s~~~~Pii~ils~g~DP~~~i~~~A~~~~~~~~~~~l~~iSlG~gq~~~a~~~l 1098 (1637)
++||..+||..|.+++++|++.+|++|++++|+||+++||+||+..|.++|+++++ +++++++||||+||+..|+++|
T Consensus 87 ~~~v~~~lg~~~~~~~~~~l~~~~~~s~~~~Pil~~~s~g~Dp~~~i~~lA~~~~~--~~~~~~~islG~~~~~~a~~~l 164 (707)
T PF03028_consen 87 RKFVSSVLGSRFVEPPPFDLESIYEESSPTTPILFILSPGSDPSSEIEQLAKKKGF--GNKKLQSISLGSGQGPEAEKAL 164 (707)
T ss_dssp HHHHHHHH-TTTTS-----HHHHHHCTTTTC-EEEEE-TT--THHHHHHHHHCTT-------EEEEETTSHHHHHHHHHH
T ss_pred HHHHHHHcCchhhcCCCCCHHHHHHhcCCCCceEEEeCCCCChHHHHHHHHHHHhh--hhhheeecCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999873 2368999999999999999999
Q ss_pred HhhhccCCEEEEehhhhHHhhhhcHHHHHHhhhcCCCCceeEEEecCCCCCCCccccccccccccccccCCCCchhhhhH
Q psy2649 1099 QIASTKGHWAILQNVHLVKNWLPTLDKKMEASFEKPHKNYRLFISAEPASDPEYHIIPQGVLDSSIKITNEPPTGMQANL 1178 (1637)
Q Consensus 1099 ~~a~~~G~WvlL~N~HL~~~wl~~Le~~l~~~~~~~h~~FRLwLts~~~~~~~~~~fP~~lLq~s~kv~~E~p~glk~~l 1178 (1637)
++|+++|+||+||||||+++||+.|+++++.+..+.|++|||||||++++. ||++||++|+||+||+|+|+|+||
T Consensus 165 ~~a~~~G~Wv~L~N~HL~~~wl~~Le~~l~~~~~~~h~~FRL~lt~~~~~~-----~P~~lL~~s~kv~~E~p~gik~~l 239 (707)
T PF03028_consen 165 KEAAKEGHWVLLQNCHLAPSWLPQLEKKLESLSPEIHPNFRLFLTSEPSPS-----FPISLLQSSIKVTYEPPPGIKANL 239 (707)
T ss_dssp HHHHHHTSEEEEETGGGGCCCHHCHHHHHHC-SSTTSTT-EEEEEEESSTT-----S-HHHHHCSEEEEE---SSHHHHH
T ss_pred HHHhcCCeEEEcccchhHHHHHHHHHHHHhccccccccceEEEEEecCccc-----CCHHHHHcccceeeCChhHHHHHH
Confidence 999999999999999999999999999998876567999999999999985 999999999999999999999999
Q ss_pred HHHhhcCChhHHhhhhhhhhhHHHHHHHHHHHHhhhhhhccCCCCCCCcccccCCcceEeehhhHHHhhhc--CCCCcch
Q psy2649 1179 HKALDNFTQEDLEMCSKEAEYKSILFALCYFHAVVAERRKFGPQGWNRSYPFNVGDLTISSLVLYNYLEAN--NNVPWED 1256 (1637)
Q Consensus 1179 ~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~plGw~~~Y~f~~~Dl~~~~~~l~~~l~~~--~~ipw~a 1256 (1637)
.++|.++.++.+..+.++.++++++|+||||||||+||++|||+|||++||||++||.++++++..+++.. +.+||++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~Y~f~~sDl~~a~~~l~~~~~~~~~~~ipw~~ 319 (707)
T PF03028_consen 240 LRTYNSISQDFFEMCSKPPEWRRLLFLLAWFHAVLQERRRYGPLGWNKPYEFNDSDLRAALDILDNWLDESSPESIPWDA 319 (707)
T ss_dssp HHHHCC--SCCHHHTSSSCHHHHHHHHHHHHHHHHHHHHHCTTTTSSS-----HHHHHHHHHHHHHHHHHCSCCCTTHHH
T ss_pred HHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeechHHHHHHHHHHHHHHhhccccCCcHHH
Confidence 99999988878888888889999999999999999999999999999999999999999999999999987 7999999
Q ss_pred hhHHHhhhccCCCCCChhhhHHHHHHHHHhcCcccccccccccC---CCCCCCCCCccccccccccCCCCCCCcccccCC
Q psy2649 1257 LRYLFGEIMYGGHITDDWDRRLCRTYLEEYMNPELLEGETKLAP---GFPAPPNQDYQGYHTYIDESLPPESPILYGLHP 1333 (1637)
Q Consensus 1257 l~~li~ei~YGGrv~d~~Drr~L~~~l~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~i~~l~~~~~p~~~gl~~ 1333 (1637)
|+|++|+++|||||+|+||||+|++|+++||+++++++++.+.+ ++.+|...++++|.+||+++|..++|++||||+
T Consensus 320 l~~l~~~i~YGGrv~d~~D~r~l~~~~~~~f~~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~~i~~lp~~~~p~~~GL~~ 399 (707)
T PF03028_consen 320 LRYLIGEIVYGGRVDDEWDRRLLNTLLNQFFNPEIFDPDFQLSPDSGSYSIPDSNSLEDYIEWIEQLPDEDPPEWFGLPP 399 (707)
T ss_dssp HHHHHHHTTTTTT-SSHHHHHHHHHHHHHHSSGGGGSTT-EEET-TTTEE----SSHHHHHHHHCTS-SS--CCCCTS-T
T ss_pred HHHHhhhceecCeeccHHHHHHHHHHHHHHcCchhhcchhhcccCCCCccCCccccHHHHHHHHHhCCCCCCccccCCCc
Confidence 99999999999999999999999999999999999999988876 678899899999999999988889999999999
Q ss_pred CccccchhhhhHHHHHHHHhcccCCccCCCCCCcchHHHHHHHHHHHHHhCCCCCcHhhhhhcc---ccCCceEEEeehh
Q psy2649 1334 NAEIGFLTTQAENVFKIIFELQPRDTAAAQGSGVTREEKVRQVLDEILDKCPDAFNIKDMMGRV---EDRTPYIIVAFQE 1410 (1637)
Q Consensus 1334 na~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~---~~~~p~~~~l~qE 1410 (1637)
||++.+...+++.++++++.+++.....+.+++.+.++.+.+.+.++++++|..++......+. ...+|+..|+.||
T Consensus 400 na~~~~~~~~s~~ll~~l~~l~~~~~~~~~~~~~s~~~~~~~~i~~l~~~lp~~~~~~~~~~~~~~~~~~~Pl~~fl~qE 479 (707)
T PF03028_consen 400 NAEISLQQQESRELLSSLLSLQPRESSSSGGSSKSREEQVLSLIKELLEKLPQLFPIEEVKSKRPAENSNDPLNRFLEQE 479 (707)
T ss_dssp THHHHHHHHHHHHHHHHHHHCCCTTT----------HHHHCT-----------------------------HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhcccccccccccccccchhHHHHHHHHHHHHhhccCCHHHHhccCCccccCCceeeeeHHH
Confidence 9999999999999999999999987665434445567788889999999999988876655543 2468999999999
Q ss_pred hhhhHhHHHHHHhhhhhhccccccceeecccHHHHhhcccccCCCchhhhcccccccchhHHHHHHHHHHHHHhhhhccC
Q psy2649 1411 CERMNILMSEIKRSLKELNLGLKGELTITTDMEALEYSIFMDTVPPSWEKRAYPSMLGLGGWFADLMLRLKELENWVGDF 1490 (1637)
Q Consensus 1411 ~~~~n~Ll~~I~~sL~~l~~~l~G~~~~s~~l~~l~~~L~~~~VP~~W~~~~~~s~~~l~~Wl~dL~~R~~~l~~w~~~~ 1490 (1637)
++++|+|++.|+++|++|.++++|.+.||+++++++++|..|+||..|.+++||+++++.+|++||.+|++|+.+|....
T Consensus 480 ~~~~~~LL~~I~~sL~~L~~~lkG~~~~t~~l~~l~~~L~~~~VP~~W~~~~~~s~~~l~~Wl~dL~~Rv~~l~~w~~~~ 559 (707)
T PF03028_consen 480 IERFNKLLQIIRQSLQELQKALKGEIKMTNELEALAQSLLKGQVPKSWLRYSYPSPKPLSSWLQDLIKRVEQLQRWASNS 559 (707)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTS--GGG--S---SS--HHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhCCCChhHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCchhhcccccCchhHHHHHHHHhhhhcCCCccccccccccccccccccCCCCCCCccccccccccccccccccccccc
Q psy2649 1491 QLPSSVWLAGFFNPQSFLTAIMQSTARKNEWPLDKMCLQCDVTKKQREDFTQAPRDGAYVNGLYMEGARWDIALGVISDA 1570 (1637)
Q Consensus 1491 ~~p~~~wL~~~f~P~aFLtA~~Q~~ar~~~~~ld~L~~~~~v~~~~~~~~~~~~~~g~~I~GL~L~Ga~wd~~~~~L~e~ 1570 (1637)
+.|..|||||||||+|||||+||++||++++|+|+|.|.++|.....+....+|++|+||+||+|+||+||...+++.++
T Consensus 560 ~~p~~~wLs~ff~P~aFLtAlrQ~~AR~~~~~ld~L~l~~~v~~~~~~~~~~~~~~g~~I~GL~leGA~wd~~~~~l~~~ 639 (707)
T PF03028_consen 560 GQPKSFWLSGFFNPQAFLTALRQEYARKNKIPLDQLTLSFEVTSSEDENIRSPPEDGVYIHGLFLEGARWDGQKGCLEES 639 (707)
T ss_dssp -----B-GGGSS-HHHHHHHHHHHHHHHTT-----EE--EE--------------EEEEE-SEEEESSEEET-TCEE--S
T ss_pred CCceEEecccccChHHHHHHHHHHHHHhcCcCchhcceeEEEEeccccccccccccceEEEeEEecccEeccccCcccCC
Confidence 67999999999999999999999999999999999999999998765555557899999999999999999999999999
Q ss_pred cccccCCCCcEEEEEeeccchhhccccccCccccccccCC-cEEEEEecccCCCCcchhhhhhhhccC
Q psy2649 1571 KLKELFPMMPVIYIKAITQDKQDLRNMYECPVYKTRQRGP-NYVWTFNLKTKEKPAKWTMAGVALLFM 1637 (1637)
Q Consensus 1571 ~~~~~~~~lP~i~~~~~~~~~~~~~~~y~cPvY~~~~R~~-n~i~~~~l~~~~~~~~wi~rGvAl~~~ 1637 (1637)
.++.++++||++|++|+..........|.||||+|+.|++ |||++++|||+.++++||+|||||+||
T Consensus 640 ~~~~~~~~~pv~~~~~~~~~~~~~~~~y~~PvY~~~~R~~~~~v~~l~l~~~~~~~~Wi~rGvAl~lq 707 (707)
T PF03028_consen 640 SPKSLYPPMPVIWLKPVQASPQSSDNSYECPVYKTSSREGLNFVFSLPLPTDEDPDHWILRGVALLLQ 707 (707)
T ss_dssp SSEEEES-EEEE-EE-----TTCGGCSEEEEEESSTT--S--EEEEEEE-B-T-HHHHHTTT-EEES-
T ss_pred CcccccccCceeEeccccccccCCCCEEECCceecCcCCCCeEEEEEEcCCCCCHHHHHHHhHHHhcC
Confidence 9999999999999999876555667899999999999985 899999999999999999999999998
|
The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A. |
| >KOG3595|consensus | Back alignment and domain information |
|---|
| >COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases | Back alignment and domain information |
|---|
| >PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases | Back alignment and domain information |
|---|
| >PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1969|consensus | Back alignment and domain information |
|---|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
| >KOG0250|consensus | Back alignment and domain information |
|---|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A | Back alignment and domain information |
|---|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
| >COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
| >KOG0730|consensus | Back alignment and domain information |
|---|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >KOG2028|consensus | Back alignment and domain information |
|---|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >KOG0994|consensus | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
| >KOG0733|consensus | Back alignment and domain information |
|---|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >KOG0743|consensus | Back alignment and domain information |
|---|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0738|consensus | Back alignment and domain information |
|---|
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
| >PRK13948 shikimate kinase; Provisional | Back alignment and domain information |
|---|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
| >PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella | Back alignment and domain information |
|---|
| >KOG0733|consensus | Back alignment and domain information |
|---|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
| >COG3074 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
| >PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0736|consensus | Back alignment and domain information |
|---|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
| >PRK13947 shikimate kinase; Provisional | Back alignment and domain information |
|---|
| >KOG3354|consensus | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0734|consensus | Back alignment and domain information |
|---|
| >PRK15422 septal ring assembly protein ZapB; Provisional | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
| >PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A | Back alignment and domain information |
|---|
| >PRK13946 shikimate kinase; Provisional | Back alignment and domain information |
|---|
| >PLN02199 shikimate kinase | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1029|consensus | Back alignment and domain information |
|---|
| >PRK05057 aroK shikimate kinase I; Reviewed | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >COG0703 AroK Shikimate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
| >KOG0731|consensus | Back alignment and domain information |
|---|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >PLN02165 adenylate isopentenyltransferase | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation | Back alignment and domain information |
|---|
| >PRK00131 aroK shikimate kinase; Reviewed | Back alignment and domain information |
|---|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
| >PTZ00202 tuzin; Provisional | Back alignment and domain information |
|---|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
| >KOG0991|consensus | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PRK10884 SH3 domain-containing protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
| >TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family | Back alignment and domain information |
|---|
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants | Back alignment and domain information |
|---|
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
| >KOG0728|consensus | Back alignment and domain information |
|---|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
| >KOG0739|consensus | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1637 | ||||
| 3vkh_A | 3367 | X-Ray Structure Of A Functional Full-Length Dynein | 1e-130 | ||
| 3vkg_A | 3245 | X-Ray Structure Of An Mtbd Truncation Mutant Of Dyn | 1e-122 | ||
| 4ai6_A | 2695 | Dynein Motor Domain - Adp Complex Length = 2695 | 3e-19 | ||
| 4ai6_A | 2695 | Dynein Motor Domain - Adp Complex Length = 2695 | 4e-13 | ||
| 3qmz_A | 2486 | Crystal Structure Of The Cytoplasmic Dynein Heavy C | 2e-18 | ||
| 3qmz_A | 2486 | Crystal Structure Of The Cytoplasmic Dynein Heavy C | 2e-13 | ||
| 2rr7_A | 155 | Microtubule Binding Domain Of Dynein-C Length = 155 | 6e-06 | ||
| 3err_A | 536 | Microtubule Binding Domain From Mouse Cytoplasmic D | 5e-05 | ||
| 3j1t_A | 164 | High Affinity Dynein Microtubule Binding Domain - T | 4e-04 |
| >pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor Domain Length = 3367 | Back alignment and structure |
|
| >pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor Domain Length = 3245 | Back alignment and structure |
| >pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex Length = 2695 | Back alignment and structure |
| >pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex Length = 2695 | Back alignment and structure |
| >pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain Motor Domain Length = 2486 | Back alignment and structure |
| >pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain Motor Domain Length = 2486 | Back alignment and structure |
| >pdb|2RR7|A Chain A, Microtubule Binding Domain Of Dynein-C Length = 155 | Back alignment and structure |
| >pdb|3ERR|A Chain A, Microtubule Binding Domain From Mouse Cytoplasmic Dynein As A Fusion With Seryl-Trna Synthetase Length = 536 | Back alignment and structure |
| >pdb|3J1T|A Chain A, High Affinity Dynein Microtubule Binding Domain - Tubulin Complex Length = 164 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1637 | |||
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 0.0 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 0.0 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 6e-71 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 6e-17 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 4e-04 | |
| 2rr7_A | 155 | Dynein heavy chain 9; microtubule-binding, stalk h | 7e-27 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-16 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-05 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 9e-04 |
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
Score = 1546 bits (4003), Expect = 0.0
Identities = 387/1781 (21%), Positives = 718/1781 (40%), Gaps = 272/1781 (15%)
Query: 5 EYMDKPLIYCHFVECVGDPKYMKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMSHI 64
+ + +P++Y +++ Y + + + L + + + + E + LVLF + + HI
Sbjct: 1581 DALKRPILYSNWL----TKDYQPV-NRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHI 1635
Query: 65 CRINRIMEAPRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASL 124
RI+R+ P+G+ALL+GV G GK LSR A+++ L + I++ NY D DL L
Sbjct: 1636 LRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNYKSSDFDDDLRML 1695
Query: 125 YLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVPDLFTDDEIENIVNNIAAEPEI 184
+AG K I F+ +S V + FL +N +LA GEVP LF +E +++
Sbjct: 1696 LKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFTALMHACKET--- 1752
Query: 185 PLTADLDPLTMLTDDATIAF---------------------------------------- 204
A + L + +++ +
Sbjct: 1753 ---AQRNGLILDSEEELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNRCVLDW 1809
Query: 205 ---WNNEGL-------------PNDRMSTENATILVNSQRWPLMIDPQEVLRKPCAVFMA 248
W+ E L N + I ++ R +
Sbjct: 1810 FGEWSPEALFQVGSEFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLV 1869
Query: 249 YVHSSVNQISVSYLLNERRYNYTTPKSFLEQIDLYAKLLKIKFDDNKSGITRFQNGLQKL 308
Y+H ++ + ++ L + R NY TP+ +L+ I+ L+ K D + GL+KL
Sbjct: 1870 YIHQTIGEANIRLLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKL 1929
Query: 309 VSLGNEEKKVRAIEEDVSYKQKVCAEDLEKAEPALVAAQEALDTLDKNNLTELKALKAPP 368
E +V+ ++ L + L E + K + + +A +
Sbjct: 1930 RD---TEAQVKDLQ-----------VSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQ 1975
Query: 369 QGVIAVCDAVAVLMASKKGKVPKDLGWKGSQLKALKAPPQGLCAWVINIITFYNVWTF-- 426
+ + + V + V + + ++
Sbjct: 1976 KDARELQVQLDV---------------------------RNKEIAVQKVKAYADLEKAEP 2008
Query: 427 VEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEEC 486
P R+ + K E+ A I +LE ++ +++ ++E + ++ +
Sbjct: 2009 TGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKV 2068
Query: 487 AEKIDLADRLVNGLASENVRWKDSVLGLQQSALTLPGDILLVTAFVSYVGCFTRSYRLDL 546
K+D + L++ L SE RW+ T+ GD++L +AF++Y+G F +++R DL
Sbjct: 2069 KNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDL 2128
Query: 547 LNKFWLPTIKKSKI---------------DWFHEWPQEAL--ESVSLKFLVKSCESHRY- 588
+ K W+ + I + W +L + + ++ + +RY
Sbjct: 2129 MRK-WMIRLDSVGIKFKSDLSVPSFLSKPEERLNWHANSLPSDELCIENAIMLKRFNRYP 2187
Query: 589 ------------------GNKLTVIRLGQKRVMDQIEKAVMSGFVLLIENIGESVDPVLD 630
K+T M +E A+ G LL++++ E++DPVL+
Sbjct: 2188 LVIDPSGQAMEFLMNQYADKKITKTSFLDSSFMKNLESALRFGCPLLVQDV-ENIDPVLN 2246
Query: 631 NLIGRNLIRKG--KVVKIGEKEIDYNPNFKLILHTKLANPHYKPEMQAQTTLINFTVTRD 688
++ + + +KG ++++G++++D++P+F + L T+ H+ P++ ++ T +NFTVT
Sbjct: 2247 PVLNKEIRKKGGRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPS 2306
Query: 689 GLEDQLLAEVVKFERPDLELLKANLTKEQNLFKITLKGLEDDLLMRLSSSGGDVLSDKNL 748
L+ Q L E +K ERPD +++L K Q F++ L+ LE LL LS + G++L D ++
Sbjct: 2307 SLQSQCLHEALKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNILDDDSV 2366
Query: 749 VLNLEKSKKTAKEIEIKVKEGKKTAKKIDEAREQYRPAAERASVIYFIMNELFKINPIYQ 808
+ LE KK EI +KV+E + ++I E Y P A S +YF M EL + + +YQ
Sbjct: 2367 ISTLETLKKETTEIALKVEETETVMQEISEVSALYNPMALSCSRVYFAMEELSQFH-LYQ 2425
Query: 809 FSLKAFTVVFHNAMTKAKK---SDNLKGRVANLVESITFMTFQYTSRGLFERDKLIFMAQ 865
FSL+AF +F+N + + R+ L + I MTF +R L DKL F Q
Sbjct: 2426 FSLRAFLDIFYNLLNNNPNLVDKKDPNERLVYLSKDIFSMTFNRVTRTLLNDDKLTFALQ 2485
Query: 866 MTIQVKSLCMGDQHYHVLQQPKRKALAAANAELAAASQKLAELKAKIAISMMKKEIAREE 925
+TI I++ EI E
Sbjct: 2486 LTI-------------------------------------------ISVKGTSNEIEESE 2502
Query: 926 LDFLLR-----FPFQPGVSSPVDFLTNTLWG-GVRALSNLEEFKNLDKDIEAAAKRWKKY 979
DFLL+ + + L+ T + + F L I+ + WK++
Sbjct: 2503 WDFLLKGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQVPSFSKLVDHIQQNSSDWKQF 2562
Query: 980 IEGETPEKDKLPQEW------------KNKSALQRLCIMRCLRPDRMTYAVRSFVEEKMG 1027
+ + +P+ W S +++ +M+ DR+ SFV G
Sbjct: 2563 FGKDQVGEPIIPESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDRVLQYSHSFVCSVFG 2622
Query: 1028 DRYVNARAIEFEQSY-RESSSTTPIFFILSPGVDPTRDVEAVGRKMGFTTDLRNLHNVSL 1086
+ ++N + ++ +E S++P+ PG D + V+ + ++ + + ++
Sbjct: 2623 EDFLNTQELDMANIVEKEVKSSSPLLLCSVPGYDASSKVDDLALQLH-----KQYKSFAI 2677
Query: 1087 GQGQEV-IAEETIQIASTKGHWAILQNVHLVKNWLPTLDKKMEASFEKPHKNYRLFISAE 1145
G + +AE++I A+ G W +L+N+HL WL L+KK+ + PH ++RLF+++E
Sbjct: 2678 GSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHS--LSPHPSFRLFMTSE 2735
Query: 1146 PASDPEYHIIPQGVLDSSIKITNEPPTGMQANLHKALDNFTQEDLEMCSKEAEYKSILFA 1205
+P +L S + E P G++ANL M + AE I F
Sbjct: 2736 IHPA-----LPANLLRMSNVFSYENPPGVKANLLHTFIGIPATR--MDKQPAERSRIYFL 2788
Query: 1206 LCYFHAVVAERRKFGPQGWNRSYPFNVGDLTISSLVLYNYLE---------ANNNVPWED 1256
L +FHA++ ER ++ P GW + + FN DL + + +++ + +PW
Sbjct: 2789 LAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGRSNIDPDKIPWIA 2848
Query: 1257 LRYLFGEIMYGGHITDDWDRRLCRTYLEEYMNPELLEGETKLAP--GFPAPPNQDYQGYH 1314
+R + G +YGG I +++D RL ++LE+ P + L P G P +
Sbjct: 2849 VRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSIGLSVPEGTTRAHFM 2908
Query: 1315 TYIDESLPPESPILYGLHPNAEIGFLTTQAENVFKIIFELQPRDTAAAQGSGV------- 1367
+I+ +PI GL NAE L+ +A + + ++Q +
Sbjct: 2909 KWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDGEDDQVSGSSKKES 2968
Query: 1368 -------TREEKVRQVLDEILDKCPDAFNIKDMMGRVEDRTPYIIVAFQECERMNILMSE 1420
+ K+R + E P + P +E L+ +
Sbjct: 2969 SSSSSEDKGKAKLRATITEWTKLLPKPLKQLKRTT-QNIKDPLFRCFEREISTGGKLVKK 3027
Query: 1421 IKRSLKELNLGLKGELTITTDMEALEYSIFMDTVPPSWEKRAYPSMLGLGGWFADLMLRL 1480
I L L + G + T + +L SI VP W+ + P + L W +D R+
Sbjct: 3028 ITNDLANLLELISGNIKSTNYLRSLTTSISKGIVPKEWKWYSVPETISLSVWISDFSKRM 3087
Query: 1481 KELENWVGDFQL-PSSVWLAGFFNPQSFLTAIMQSTARKNEWPLDKMCLQCDVTKKQRED 1539
++L VWL G NP++++TA QS ++ N W L+ + L K +
Sbjct: 3088 QQLSEISESSDYSSIQVWLGGLLNPEAYITATRQSASQLNGWSLENLRLHASSLGKISSE 3147
Query: 1540 FTQAPRDGAYVNGLYMEGARWDIALGVISDAKLKELFPMMPVIYIKAITQDK---QDLRN 1596
V G+ +EGA W+ +D L + + + +D + +
Sbjct: 3148 ----GGASFNVKGMALEGAVWNNDQLTPTDI----LSTPISIATLTWKDKDDPIFNNSSS 3199
Query: 1597 MYECPVYKTRQRGPNYVWTFNLKTKEK--PAKWTMAGVALL 1635
PVY R +++ +L + W V++
Sbjct: 3200 KLSVPVYLNETRS-ELLFSIDLPYDQSTSKQNWYQRSVSIS 3239
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695 | Back alignment and structure |
|---|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695 | Back alignment and structure |
|---|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695 | Back alignment and structure |
|---|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695 | Back alignment and structure |
|---|
| >2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD, antiparallel coil, motor protein, DSH; NMR {Chlamydomonas reinhardtii} Length = 155 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Length = 536 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1637 | |||
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 100.0 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 100.0 | |
| 2rr7_A | 155 | Dynein heavy chain 9; microtubule-binding, stalk h | 99.83 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 99.82 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.72 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.68 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.65 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.21 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 96.12 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.96 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 95.96 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.9 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 95.77 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 95.72 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 95.71 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.69 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 95.68 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 95.58 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 95.5 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 95.49 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 95.46 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 95.46 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.44 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.43 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.42 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.26 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 95.25 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 95.18 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 95.16 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.12 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 95.1 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 95.03 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 95.0 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.86 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 94.73 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.7 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 94.68 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 94.66 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 94.63 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 94.55 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 94.55 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 94.49 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 94.4 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 94.38 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 94.3 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.29 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 94.27 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 94.27 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 94.25 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 94.25 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 94.21 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 93.91 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 93.88 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 93.81 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 93.75 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 93.62 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 93.62 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 93.46 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 93.31 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 93.28 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 93.1 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 92.98 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 92.95 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 92.93 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 92.83 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 92.77 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 92.72 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 92.66 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 92.51 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 92.47 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 92.23 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 92.19 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 91.8 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 91.4 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 91.2 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 91.11 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 90.33 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 90.15 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 90.06 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 90.02 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 89.62 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 89.53 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 89.47 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 89.37 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 89.22 | |
| 1ic2_A | 81 | Tropomyosin alpha chain, skeletal muscle; alpha-he | 89.11 | |
| 4gkw_A | 167 | Spindle assembly abnormal protein 6; double helix, | 88.91 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 88.79 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 88.77 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 88.42 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 88.27 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 88.18 | |
| 1ic2_A | 81 | Tropomyosin alpha chain, skeletal muscle; alpha-he | 87.72 | |
| 2jee_A | 81 | YIIU; FTSZ, septum, coiled-coil, cell division, ce | 87.64 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 87.63 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 87.07 | |
| 2eqb_B | 97 | RAB guanine nucleotide exchange factor SEC2; coile | 87.06 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 86.29 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 85.46 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 84.59 | |
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 84.19 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 83.99 | |
| 3hnw_A | 138 | Uncharacterized protein; coiled-coil, structural g | 83.73 | |
| 3bas_A | 89 | Myosin heavy chain, striated muscle/general contro | 82.84 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 82.76 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 82.7 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 82.33 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 81.77 | |
| 3u1c_A | 101 | Tropomyosin alpha-1 chain; anti-parallel coiled co | 81.12 | |
| 3u1c_A | 101 | Tropomyosin alpha-1 chain; anti-parallel coiled co | 81.0 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 80.72 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 80.71 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 80.52 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 80.25 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 80.18 |
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-288 Score=2999.71 Aligned_cols=1499 Identities=26% Similarity=0.474 Sum_probs=1225.4
Q ss_pred ccccCCceeeecccCCCCCccccCCChHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCceEEEeec
Q psy2649 5 EYMDKPLIYCHFVECVGDPKYMKMPDWATLHKILSETMTSYNEIVASMNLVLFEDAMSHICRINRIMEAPRGNALLVGVG 84 (1637)
Q Consensus 5 ~~~~~~~~f~~f~~~~~~~~Y~~v~~~~~l~~~l~~~l~~yn~~~~~~~lvlf~~~i~hi~ri~RvL~~p~gh~lLvG~~ 84 (1637)
..+.+|++||||+++ .|++| +.++|+++++++|++||+++.+|+||||++|++||+||+|||+||+||+||||+|
T Consensus 1581 ~~~~~pllf~~f~~~----~Y~~v-~~~~l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvg 1655 (3245)
T 3vkg_A 1581 DALKRPILYSNWLTK----DYQPV-NRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVS 1655 (3245)
T ss_dssp GGGCSSCCCCSSCC--------CC-CHHHHHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEEST
T ss_pred hhcccCcchhhhccc----cCccC-CHHHHHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCC
Confidence 456789999999873 69999 7899999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHhHHHhhccccceEEEeccccCcchhhhHHHHHHHHhhcccccEEEEeccccccccceeeeehhhhccCCCCC
Q psy2649 85 GSGKQSLSRLSAFISTLEPFQIQLKKNYGIPDLKIDLASLYLKAGLKNAGIMFLMTDSQVADEKFLVIINDMLASGEVPD 164 (1637)
Q Consensus 85 GsGr~sl~rlaa~~~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~~i~~~~fle~in~lL~~gevp~ 164 (1637)
||||+|||||||||+|+++|||.++++|+..+|++|||.+|++||++|+++||||+|+||.+++|||+||+||++|||||
T Consensus 1656 GSGkqSLtrLAa~i~~~~vfqi~i~k~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~ 1735 (3245)
T 3vkg_A 1656 GGGKSVLSRFVAWMNGLSIYTIKVNNNYKSSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPG 1735 (3245)
T ss_dssp TSSHHHHHHHHHHHTTCEEECCC----CCHHHHHHHHHHHHHHHHTSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSCCTT
T ss_pred CCcHHHHHHHHHHHhCCeeEEEeeeCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEeccccccHHHHHHHHHHhccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhhhcCCCccccCCCCccccc--chhhHHHHhhccC---C-CccccccCcceeEecccccccccC----
Q psy2649 165 LFTDDEIENIVNNIAAEPEIPLTADLDPLTML--TDDATIAFWNNEG---L-PNDRMSTENATILVNSQRWPLMID---- 234 (1637)
Q Consensus 165 Lf~~ee~~~i~~~~~~~~~~~~~~~l~~~~~~--s~~~~~~~f~~~v---L-~v~~~s~~~~~~~~~~~~~P~l~~---- 234 (1637)
||+.||+++|++.+|+.++. .|.. |++++|+||++|| | ||+||||.|+.||.||++||+|+|
T Consensus 1736 LF~~dE~~~i~~~~r~~a~~--------~g~~~dt~~~l~~~Fi~rvr~NLHvVL~mSPvg~~fR~R~r~fPaLvncctI 1807 (3245)
T 3vkg_A 1736 LFEGEEFTALMHACKETAQR--------NGLILDSEEELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNRCVL 1807 (3245)
T ss_dssp SSCTTTHHHHHHHHHHHHHH--------TTCCCCCHHHHHHHHHHHHTTTCCEEEEECTTSTTTTC----CTHHHHHSEE
T ss_pred cCCHHHHHHHHHHHHHHHHh--------cCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCCHHHHHHHHHChHHhhCcee
Confidence 99999999999999988766 4432 8899999999999 8 999999999999999999999999
Q ss_pred ------hhhhh------------------------------------------hchHHHHHHHHhhhHhhhhHHHhhccc
Q psy2649 235 ------PQEVL------------------------------------------RKPCAVFMAYVHSSVNQISVSYLLNER 266 (1637)
Q Consensus 235 ------p~~al------------------------------------------~~~~~~~~~~~h~~~~~~~~~~~~~~~ 266 (1637)
|++|+ ++.++.+|+.+|.++.+++.+|+++.+
T Consensus 1808 DWf~~Wp~eAL~~Va~~fl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~sv~~~s~~~~~~~~ 1887 (3245)
T 3vkg_A 1808 DWFGEWSPEALFQVGSEFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQG 1887 (3245)
T ss_dssp EEEESCCHHHHHHHHHHHTTTSCCCCTTCCCCHHHHHHHHC----CCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred eecCCCCHHHHHHHHHHHHhhcccccccccccccccchhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 67663 345678899999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHhhhchhhh----hhHHHhHHhhhhhhhhhHHhhhhhcch
Q psy2649 267 RYNYTTPKSFLEQIDLYAKLLKIKFDDNKSGITRFQNGLQKLVSLGNEE----KKVRAIEEDVSYKQKVCAEDLEKAEPA 342 (1637)
Q Consensus 267 r~~~~TP~~fl~~l~~f~~l~~~k~~~l~~~~~~l~~gL~kL~e~~~ee----~k~~~~~~e~~~~~~~~~~~L~~a~P~ 342 (1637)
|++|+||++|++||++|+++|.+|++++..+++||++||+||.+|.++- +++++.+.+++++++++++-|.+..-.
T Consensus 1888 R~~yvTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~ 1967 (3245)
T 3vkg_A 1888 RQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967 (3245)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999983322 122222333333333333322222211
Q ss_pred HHHHHH---HhhhhccC---ChhhhhccCCCcchhhhhhheeeeeeccCCCCCCCcCccchhhhccccCCcCcchhhhhh
Q psy2649 343 LVAAQE---ALDTLDKN---NLTELKALKAPPQGVIAVCDAVAVLMASKKGKVPKDLGWKGSQLKALKAPPQGLCAWVIN 416 (1637)
Q Consensus 343 l~~A~~---al~~l~k~---dl~Eirs~~~PP~~V~~v~eaV~~Ll~~~~~~~~~~~~W~~~k~~~i~~~a~~L~~WV~A 416 (1637)
-++|.+ .+..+.+. .-.|+.. .+...| ..+..+ .||
T Consensus 1968 ~~~ae~~k~~v~~~~~~~~~~~~ei~~-------~k~~~e---------------------~dL~~A-~Pa--------- 2009 (3245)
T 3vkg_A 1968 QQAAEIKQKDARELQVQLDVRNKEIAV-------QKVKAY---------------------ADLEKA-EPT--------- 2009 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---------------------HCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---------------------HHHhhc-CCC---------
Confidence 111111 00000000 0000000 000000 001111 123
Q ss_pred heeeeEEEEecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHh
Q psy2649 417 IITFYNVWTFVEPKRKALAAANAELAAASQKLAELKAKIASLEATLQELTDKFDAAVKEKLFCQNQAEECAEKIDLADRL 496 (1637)
Q Consensus 417 i~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~l~~~~~~l~~le~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~L 496 (1637)
+|||++++++++++++++++|++++++|++++++|++|+++|+++++|+++|+.+++.|+.||+||++|
T Consensus 2010 -----------~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~L 2078 (3245)
T 3vkg_A 2010 -----------GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIAL 2078 (3245)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccchHHHHHHHhhccccCCcceeeehhhhhhhcchhhhHHHHhhhccccccccccCCC---------------
Q psy2649 497 VNGLASENVRWKDSVLGLQQSALTLPGDILLVTAFVSYVGCFTRSYRLDLLNKFWLPTIKKSKID--------------- 561 (1637)
Q Consensus 497 i~~L~~E~~rW~~~~~~l~~~~~~l~gd~lL~aa~i~Y~G~~~~~~R~~ll~~~w~~~l~~~~id--------------- 561 (1637)
|++|++|+.||++++++++.+..+|+|||||||||++|+|||+.+||+.++.. |...|++.+|.
T Consensus 2079 i~gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~~~-W~~~l~~~~Ip~s~~~~l~~~L~~~~ 2157 (3245)
T 3vkg_A 2079 LDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRK-WMIRLDSVGIKFKSDLSVPSFLSKPE 2157 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH-HHHHHHHHTCCCCTTCCHHHHTSCHH
T ss_pred HHhhhhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHhcCCCCCCCCCHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999987 99999988871
Q ss_pred cccccCCccccCcc----ccceeeccc----------------cccc-CCceEEEEecccchhHHHHHHHhcCcEEEEec
Q psy2649 562 WFHEWPQEALESVS----LKFLVKSCE----------------SHRY-GNKLTVIRLGQKRVMDQIEKAVMSGFVLLIEN 620 (1637)
Q Consensus 562 ~~~~w~~~gLp~d~----n~~i~~~~~----------------~~~~-~~~l~v~~~~~~~~~~~le~ai~~G~~lli~d 620 (1637)
+++.|+.+|||+|+ ||+|+.++. ++++ ++++.|++++|++|+++||+||++|+||||||
T Consensus 2158 ~i~~W~~~GLP~D~lSiENaiiv~~~~R~PLlIDPq~Qa~~WIk~~~~~~~l~v~~~~d~~f~~~LE~ai~fG~pvLien 2237 (3245)
T 3vkg_A 2158 ERLNWHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTSFLDSSFMKNLESALRFGCPLLVQD 2237 (3245)
T ss_dssp HHHHHHHTTCCSSHHHHHHHHHTTSCSSCEEEECTTSHHHHHHHHHTGGGCCCCCCC-----HHHHHHHHHHTCCEECCC
T ss_pred HHHHHHhCCCCCCchhhhHHHHHhcCCCceEEEChHHHHHHHHHHHhccCCceEeecCchhHHHHHHHHHHcCCeEEEcc
Confidence 57899999999998 999998875 2333 45799999999999999999999999999999
Q ss_pred ccccccchhhhhhhhhhhcCc--ceeEecccccccCCCceeeeeecccCCCCCccccccceEEEEEecccchhHHHHHHH
Q psy2649 621 IGESVDPVLDNLIGRNLIRKG--KVVKIGEKEIDYNPNFKLILHTKLANPHYKPEMQAQTTLINFTVTRDGLEDQLLAEV 698 (1637)
Q Consensus 621 v~e~~dp~L~~ll~~~~~~~g--~~I~ig~~~i~~~p~F~L~l~T~~~~~~~~p~~~~~~~vInftvt~~~Le~qlL~~v 698 (1637)
| |.+||+|+|+|.|++++.| .+|++||++|+|||+|||||+|+++||||+||++++||+||||||++|||+|||+.|
T Consensus 2238 v-E~lDP~L~pvL~k~~~k~gg~~~I~lGdk~idy~~~FrlyltTkl~np~y~Pev~~kvtlINFtvT~~GLedQLL~~v 2316 (3245)
T 3vkg_A 2238 V-ENIDPVLNPVLNKEIRKKGGRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEA 2316 (3245)
T ss_dssp C-C----------------------------------CCCEEEEECCTTCCCCHHHHHTSEEEECCCCHHHHHHHHHHHH
T ss_pred c-cccchhHHHHHHHHHHhcCceEEEEECCeeEecCCCceEEEEecCCCCCCCHHHHhheEEEEEEecHHHHHHHHHHHH
Confidence 9 8999999999999999887 389999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCHHHHhhhhhccccceeeeeccchhHHHHhhhccCCCccchhHHHhhhhhhhhhHHHHHHHhhhcchhHHHHHH
Q psy2649 699 VKFERPDLELLKANLTKEQNLFKITLKGLEDDLLMRLSSSGGDVLSDKNLVLNLEKSKKTAKEIEIKVKEGKKTAKKIDE 778 (1637)
Q Consensus 699 v~~e~PeLe~~~~~l~~~~~~~~~~l~~lE~~lL~~L~~s~g~iLed~~li~~L~~~K~~~~~i~~~l~e~~~~~~~i~~ 778 (1637)
|++|+||||++|.+|+++.++++++|++|||+||+.|++++|+||||++||++|+++|.++.+|+++++++++++++|++
T Consensus 2317 v~~ErPeLE~~r~~Li~~~~~~k~~L~~LEd~lL~~Ls~s~GniLdd~~LI~~L~~sK~~s~eI~~kl~~a~~te~~I~~ 2396 (3245)
T 3vkg_A 2317 LKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNILDDDSVISTLETLKKETTEIALKVEETETVMQEISE 2396 (3245)
T ss_dssp HHHHCHHHHHHHHHHHHTTHHHHHHHHTTTHHHHHHHHTTSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhhhhhhHHHHhhhcccccCccccccchhhHHHHHHHhhhcccc---cchHHHHhhhhhceeeeeeeeeccccc
Q psy2649 779 AREQYRPAAERASVIYFIMNELFKINPIYQFSLKAFTVVFHNAMTKAKKS---DNLKGRVANLVESITFMTFQYTSRGLF 855 (1637)
Q Consensus 779 ~r~~Y~pvA~~~a~ly~~l~~l~~l~~mYqfSl~~f~~lf~~~l~~~~~~---~~~~~r~~~L~~~lt~~~y~~v~r~Lf 855 (1637)
+|+.|||+|.|||.|||++++|+.|| ||||||.||+++|..+|++++++ +++++|+.+|++++|+.+|.+||||||
T Consensus 2397 ~R~~YrpvA~r~s~LyF~i~dL~~i~-mYQfSL~~F~~lF~~si~~s~~~~~~~~~~~Rl~~l~~~lt~~vy~~v~RgLF 2475 (3245)
T 3vkg_A 2397 VSALYNPMALSCSRVYFAMEELSQFH-LYQFSLRAFLDIFYNLLNNNPNLVDKKDPNERLVYLSKDIFSMTFNRVTRTLL 2475 (3245)
T ss_dssp HHHHSHHHHHHHHHHHHHHTGGGGST-TCCCCHHHHHHHHHHHHSSCGGGSSCCCHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCC-eeeCCHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999 99999999999999999988776 789999999999999999999999999
Q ss_pred ccchhhhhhhhee-eeeccccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccchhhccCC
Q psy2649 856 ERDKLIFMAQMTI-QVKSLCMGDQHYHVLQQPKRKALAAANAELAAASQKLAELKAKIAISMMKKEIAREELDFLLRFPF 934 (1637)
Q Consensus 856 ~~d~l~f~~~l~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 934 (1637)
++|||+|+|+||+ .+ ....+.++++||+||++|+.
T Consensus 2476 ekdKLlFs~~l~~~~i--------------------------------------------~~~~~~i~~~E~~flL~g~~ 2511 (3245)
T 3vkg_A 2476 NDDKLTFALQLTIISV--------------------------------------------KGTSNEIEESEWDFLLKGGD 2511 (3245)
T ss_dssp GGGTTHHHHHHHHHHT--------------------------------------------TTSTTCCCHHHHHHHHHTTT
T ss_pred hhhHHHHHHHHHHHHH--------------------------------------------HhccCCCCHHHHHHHhcCCc
Confidence 9999999999993 44 33467899999999999875
Q ss_pred CCCC-----CCccccccccccccccccc-chhhhhccchhhHHHHHHHHhhhhcCCCCcCCCchhhcc------------
Q psy2649 935 QPGV-----SSPVDFLTNTLWGGVRALS-NLEEFKNLDKDIEAAAKRWKKYIEGETPEKDKLPQEWKN------------ 996 (1637)
Q Consensus 935 ~~~~-----~~~~~wl~~~~w~~i~~L~-~l~~F~~l~~~~~~~~~~W~~~~~s~~pe~~~lp~~~~~------------ 996 (1637)
.... +++++|+++..|.+++.|+ .+|.|.++.+++..+.+.|+.|+++..||....|..|.+
T Consensus 2512 ~~~~~~~~~~~~~~wl~~~~w~~i~~L~~~l~~F~~l~~~~~~~~~~W~~~~~s~~pe~~~pp~~w~~~~~~~~~~~~~~ 2591 (3245)
T 3vkg_A 2512 NLTSIKETIPQLDSLLSTTQQKWLICLRQQVPSFSKLVDHIQQNSSDWKQFFGKDQVGEPIIPESWIVAQAQLSNQQSTI 2591 (3245)
T ss_dssp TGGGCCCCCGGGTTTCCHHHHHHHHHHHHHCGGGTTHHHHHHHTHHHHHHHTCSSCSSCCCCCTTHHHHHHHHSSCCCHH
T ss_pred cccccccccCCccccCCHHHHHHHHHHHhhChhhhhHHHHHHhCHHHHHHHhcccCcccccCccccccccccccccccch
Confidence 4321 3457999999999999998 899999999999999999999999999998655588853
Q ss_pred chHHHHHHHhhhcCCCchhHHHHHHHHHhhcCccccccccchhhhhh-ccCCCCcEEEEeCCCCCCchhHHHhcccccee
Q psy2649 997 KSALQRLCIMRCLRPDRMTYAVRSFVEEKMGDRYVNARAIEFEQSYR-ESSSTTPIFFILSPGVDPTRDVEAVGRKMGFT 1075 (1637)
Q Consensus 997 l~~fqklll~r~lrpdrl~~~~~~~v~~~lg~~~~~~~~~~l~~~~~-~s~~~~Pii~ils~g~DP~~~i~~~A~~~~~~ 1075 (1637)
+++|||||++||+||||+..|+++||.+.||.+|++++++||+.+|+ +|+++||+|||+|||+||+..|.+||+++|
T Consensus 2592 l~~fqkLlllr~lRpDr~~~a~~~fV~~~lG~~fv~~~~~dl~~~~~~es~~~tPlifilSpG~DP~~~l~~lA~~~~-- 2669 (3245)
T 3vkg_A 2592 VSNFRKILLMKAFHSDRVLQYSHSFVCSVFGEDFLNTQELDMANIVEKEVKSSSPLLLCSVPGYDASSKVDDLALQLH-- 2669 (3245)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHSCTTTTCC--CCHHHHHHHSSCTTSCEECEECTTCCCHHHHHHHHHHHT--
T ss_pred hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCccCCCCCCCHHHHHhccCCCCccEEEEeCCCCChHHHHHHHHHHhC--
Confidence 69999999999999999999999999999999999999999999999 999999999999999999999999999986
Q ss_pred ccCCCccccccCCchh-HHHHhHHHhhhccCCEEEEehhhhHHhhhhcHHHHHHhhhcCCCCceeEEEecCCCCCCCccc
Q psy2649 1076 TDLRNLHNVSLGQGQE-VIAEETIQIASTKGHWAILQNVHLVKNWLPTLDKKMEASFEKPHKNYRLFISAEPASDPEYHI 1154 (1637)
Q Consensus 1076 ~~~~~l~~iSlG~gq~-~~a~~~l~~a~~~G~WvlL~N~HL~~~wl~~Le~~l~~~~~~~h~~FRLwLts~~~~~~~~~~ 1154 (1637)
.+++.|||||||+ ..|+++|++|+++|+||+||||||+++||+.||++++.+ ++|++|||||||+|+++
T Consensus 2670 ---~~~~~iSLGqgQg~~~A~~~i~~a~~~G~WV~LqNcHL~~sWl~~LEk~le~~--~~h~~FRLwLTsep~~~----- 2739 (3245)
T 3vkg_A 2670 ---KQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHSL--SPHPSFRLFMTSEIHPA----- 2739 (3245)
T ss_dssp ---CCCCCCBTTSHHHHHHHHHHHHHHHHHTCEEECBCGGGCTTTHHHHHHHHHTC--CCCTTCEEECCEESCTT-----
T ss_pred ---CCcEEEECCCCccHHHHHHHHHHHHHcCCEEEEechhhhHhHHHHHHHHHHcc--CCCCCeeEEEEecCCCC-----
Confidence 4799999999999 599999999999999999999999999999999999875 68999999999999986
Q ss_pred cccccccccccccCCCCchhhhhHHHHhhcCChhHHhhhhhhhhhHHHHHHHHHHHHhhhhhhccCCCCCCCcccccCCc
Q psy2649 1155 IPQGVLDSSIKITNEPPTGMQANLHKALDNFTQEDLEMCSKEAEYKSILFALCYFHAVVAERRKFGPQGWNRSYPFNVGD 1234 (1637)
Q Consensus 1155 fP~~lLq~s~kv~~E~p~glk~~l~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~plGw~~~Y~f~~~D 1234 (1637)
||++|||+|+||++|||+|+|+||+|+|.+++++.+ |.++..|++|+|+|||||||++|||+|||+|||++|+||++|
T Consensus 2740 fP~~iLq~siKit~EpP~GlkaNl~rs~~~~~~~~~--~~~~~~~~~llf~L~fFHAvvqERrkfgplGWn~~YeFn~sD 2817 (3245)
T 3vkg_A 2740 LPANLLRMSNVFSYENPPGVKANLLHTFIGIPATRM--DKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDAD 2817 (3245)
T ss_dssp SCHHHHHTSEECCBCCCSSHHHHHHHHHTTSCHHHH--TSSSTHHHHHHHHHHHHHHHHHHGGGGTTTSCSSCCCCCHHH
T ss_pred CCHHHHHhhhHheeCCChhHHHHHHHHHHhCCHHHh--ccCcHHHHHHHHHHHHHHHHHHHHHHhCccccCcccccchHH
Confidence 999999999999999999999999999999988754 455778999999999999999999999999999999999999
Q ss_pred ceEeehhhHHHhhhc---------CCCCcchhhHHHhhhccCCCCCChhhhHHHHHHHHHhcCcccccccccccC--CCC
Q psy2649 1235 LTISSLVLYNYLEAN---------NNVPWEDLRYLFGEIMYGGHITDDWDRRLCRTYLEEYMNPELLEGETKLAP--GFP 1303 (1637)
Q Consensus 1235 l~~~~~~l~~~l~~~---------~~ipw~al~~li~ei~YGGrv~d~~Drr~L~~~l~~~~~~~~~~~~~~~~~--~~~ 1303 (1637)
|.+|.++|++|++.+ +.|||++|+|++|+|+|||||||+||||+|++|+++||+|+++++++.+.+ .+.
T Consensus 2818 l~~s~~~l~~~l~~~~~~~~n~~~~~iPw~~L~yl~gei~YGGrVtDd~DrrlL~t~l~~~~~~~~~~~~~~~~~~~~~~ 2897 (3245)
T 3vkg_A 2818 LRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSIGLS 2897 (3245)
T ss_dssp HHHHHHHHHHHHHHHSTTCSCCCTTTSCHHHHHHCCCCCCCSTTCCSSSHHHHHHHHHHHHSSGGGGSSSCEEEGGGTEE
T ss_pred HHHHHHHHHHHHHHhcccccccCCCCCCHHHHHHHHhhcccCCccCCHHHHHHHHHHHHHHcCHhhcCCcccCCCCCCCC
Confidence 999999999999874 579999999999999999999999999999999999999999999988876 367
Q ss_pred CCCCCCccccccccccCCCCCCCcccccCCCccccchhhhhHHHHHHHHhcccCCccCC-------C-------CCCcch
Q psy2649 1304 APPNQDYQGYHTYIDESLPPESPILYGLHPNAEIGFLTTQAENVFKIIFELQPRDTAAA-------Q-------GSGVTR 1369 (1637)
Q Consensus 1304 ~p~~~~~~~~~~~i~~l~~~~~p~~~gl~~na~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~-------~~~~~~ 1369 (1637)
+|+..++++|.+||+++|+.++|++||||+||++++++++++.++++|+.+||++.+.+ + +++.++
T Consensus 2898 ~P~~~~~~~y~~~I~~LP~~~~P~~fGLh~NA~i~~~~~~s~~l~~~ll~lq~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 2977 (3245)
T 3vkg_A 2898 VPEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDGEDDQVSGSSKKESSSSSSEDKG 2977 (3245)
T ss_dssp CCCCSSHHHHHHHHTTSCSCCCGGGGTSCTTHHHHHHHHHHHHHHHHHHHHHHTTTC---------------CHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHHhCCcccccccccccccccccccccccCCCc
Confidence 89999999999999999999999999999999999999999999999999999765431 0 012245
Q ss_pred HHHHHHHHHHHHHhCCCCCcHhhhhhccccCCceEEEeehhhhhhHhHHHHHHhhhhhhccccccceeecccHHHHhhcc
Q psy2649 1370 EEKVRQVLDEILDKCPDAFNIKDMMGRVEDRTPYIIVAFQECERMNILMSEIKRSLKELNLGLKGELTITTDMEALEYSI 1449 (1637)
Q Consensus 1370 ~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~~~p~~~~l~qE~~~~n~Ll~~I~~sL~~l~~~l~G~~~~s~~l~~l~~~L 1449 (1637)
++.+...+++++++||+.++..... .....+|+++|+.||++|||+|++.|++||.+|.++|+|.++||+++++++++|
T Consensus 2978 ~~~v~~~~~~~l~~lP~~~~~~~~~-~~~~~~pl~~vl~QE~~r~n~Ll~~ir~sL~~L~~aikG~i~mS~~le~l~~sl 3056 (3245)
T 3vkg_A 2978 KAKLRATITEWTKLLPKPLKQLKRT-TQNIKDPLFRCFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSI 3056 (3245)
T ss_dssp HHC-----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHHhCccccchhhcc-ccccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCCcCCHHHHHHHHHH
Confidence 5568889999999999988743211 112358999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchhhhcccccccchhHHHHHHHHHHHHHhhhhccC-CCCchhhcccccCchhHHHHHHHHhhhhcCCCcccccc
Q psy2649 1450 FMDTVPPSWEKRAYPSMLGLGGWFADLMLRLKELENWVGDF-QLPSSVWLAGFFNPQSFLTAIMQSTARKNEWPLDKMCL 1528 (1637)
Q Consensus 1450 ~~~~VP~~W~~~~~~s~~~l~~Wl~dL~~R~~~l~~w~~~~-~~p~~~wL~~~f~P~aFLtA~~Q~~ar~~~~~ld~L~~ 1528 (1637)
..|+||..|.+.+|||.++|++|++||.+|++|++.|+..+ +.|.+|||||||||+|||||++|++||+++||+|+|.|
T Consensus 3057 ~~~~VP~~W~~~syps~k~L~~W~~dL~~R~~~l~~W~~~~~~~p~~~WLsgff~Pq~FLTA~~Q~~ARk~~~plD~l~l 3136 (3245)
T 3vkg_A 3057 SKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEISESSDYSSIQVWLGGLLNPEAYITATRQSASQLNGWSLENLRL 3136 (3245)
T ss_dssp ---------CCSCCCSSCCHHHHHHHHHHHHHHHHHHHHC-------CCGGGSSCHHHHHHHHHHHHHHHTC------CC
T ss_pred HcCCCchhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEecCCCcchHHHHHHHHHHHHHHhCCCCcccee
Confidence 99999999999999999999999999999999999999875 68999999999999999999999999999999999999
Q ss_pred -ccccccccccccCCCCCCCccccccccccccccccccccccccccccCCCCcEEEEEeeccchhh---ccccccCcccc
Q psy2649 1529 -QCDVTKKQREDFTQAPRDGAYVNGLYMEGARWDIALGVISDAKLKELFPMMPVIYIKAITQDKQD---LRNMYECPVYK 1604 (1637)
Q Consensus 1529 -~~~v~~~~~~~~~~~~~~g~~I~GL~L~Ga~wd~~~~~L~e~~~~~~~~~lP~i~~~~~~~~~~~---~~~~y~cPvY~ 1604 (1637)
.++|++... . |++|+||+|||||||+||.+.+++.++. +.+||++|++|+.....+ ..+.|.||||+
T Consensus 3137 ~~~~V~~~~~----~-p~~G~yI~GL~LeGA~WD~~~~~l~e~~----~~~lPvi~l~~~~~~~~~~~~~~~~y~cPvYk 3207 (3245)
T 3vkg_A 3137 HASSLGKISS----E-GGASFNVKGMALEGAVWNNDQLTPTDIL----STPISIATLTWKDKDDPIFNNSSSKLSVPVYL 3207 (3245)
T ss_dssp CBC---------------CCEEECSCEEESCEECSSSEECCSSS----EEECCCEEECCCC---CCTTSGGGEEEEEEES
T ss_pred eeEEEecCCC----C-CCceEEEeCEEEeccEecCCCceecCcc----cCCCCceeEEEeecccccccCCCCeEEcceEe
Confidence 999985422 2 7899999999999999999988888765 467999999998754332 35689999999
Q ss_pred ccccCCcEEEEEecc--cCCCCcchhhhhhhhccC
Q psy2649 1605 TRQRGPNYVWTFNLK--TKEKPAKWTMAGVALLFM 1637 (1637)
Q Consensus 1605 ~~~R~~n~i~~~~l~--~~~~~~~wi~rGvAl~~~ 1637 (1637)
|+.|++ +++.++|| ++.+++|||+|||||+|+
T Consensus 3208 t~~R~~-~l~~~~l~~~t~~~~~~Wi~rGVALl~~ 3241 (3245)
T 3vkg_A 3208 NETRSE-LLFSIDLPYDQSTSKQNWYQRSVSISSW 3241 (3245)
T ss_dssp STTCCC-EEEEEEEEBCTTSCHHHHHTTTCEEESC
T ss_pred cCCCCC-EEEEEEEECCCCCCHhHHHHHHHHHHcC
Confidence 999984 56555555 578999999999999996
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
| >2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD, antiparallel coil, motor protein, DSH; NMR {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A | Back alignment and structure |
|---|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
| >1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 | Back alignment and structure |
|---|
| >4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 | Back alignment and structure |
|---|
| >2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} | Back alignment and structure |
|---|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
| >2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
| >3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} | Back alignment and structure |
|---|
| >3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
| >3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A | Back alignment and structure |
|---|
| >3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A | Back alignment and structure |
|---|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1637 | |||
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.35 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.61 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.24 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 96.21 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.19 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.1 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.81 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 95.73 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.72 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.72 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 95.7 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.48 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.32 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.3 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.95 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 93.97 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.66 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.13 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.94 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 92.68 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.08 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.02 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 91.42 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.29 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 91.06 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 90.93 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.83 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.69 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 90.61 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.04 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 90.01 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 89.91 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 89.76 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 89.67 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.4 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 89.31 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 88.67 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 88.11 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 87.56 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 87.11 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 86.8 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 86.61 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 85.85 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 85.72 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 85.65 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 84.15 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 83.49 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 82.94 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 82.83 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 82.54 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 82.24 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 81.98 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 80.17 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 80.13 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 80.08 |
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.35 E-value=6.8e-05 Score=82.15 Aligned_cols=69 Identities=20% Similarity=0.156 Sum_probs=54.3
Q ss_pred CCCCceEEEeecCCchhhHHhHHHhhccccceEEEecc---ccCcchhhhHHHHHHHHhhcccccEEEEeccc
Q psy2649 73 APRGNALLVGVGGSGKQSLSRLSAFISTLEPFQIQLKK---NYGIPDLKIDLASLYLKAGLKNAGIMFLMTDS 142 (1637)
Q Consensus 73 ~p~gh~lLvG~~GsGr~sl~rlaa~~~~~~~~~i~~~~---~y~~~~f~~dLk~~~~~ag~~~~~~v~l~~d~ 142 (1637)
.|.+++||.|++||||++++|-.|.-.++.++.+..+. +|...+-...++.++..| .++.|+|++++|-
T Consensus 38 ~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A-~~~~p~il~iDEi 109 (246)
T d1d2na_ 38 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDA-YKSQLSCVVVDDI 109 (246)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHH-HTSSEEEEEECCH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccccccccchhhhhhhhhhhh-hhcccceeehhhh
Confidence 46678999999999999999999999999999987543 333333445688888887 5677888887774
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
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| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
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| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
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| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
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| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
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| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
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| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
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| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
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| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
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| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
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