Psyllid ID: psy2660

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MDKVEGADFNEMEPFLSPMMHTVCLVWANCKYYQGPMAMEPVPKHNVVSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIISKILSVS
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccEEcEEccccccccccHHHHHHHHHHHHHHcccccEEcccEEEEEEEccccccccEEEEEEEEEEccccccEEEEEEEccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHcEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccEEEEEEEEEccccccccEEEEEEcccHHHEEEccc
Coil and Loop (DISEMBL)
mdkvegadfnemepflspmMHTVCLVWANckyyqgpmamepvpkhnvvsnavnddqvkprslrftwsmkttssrdpnEIRAEIRKVLDANNCDYEQRERFLLLCvhgdpntdsLVQWEIEVcklprlslngvrfkRISDHIISKILSVS
Flexible Loop (DISEMBL)
MDKVEGADFNEMEPFLSPMMHTVCLVWANCKYYQGPMAMEPVPKHNVVSNavnddqvkprslrftwsmkttssrdpneirAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKlprlslngvrfkrisdhiiskilsvs
Low Complexity Region (SEG)
MDKVEGADFNEMEPFLSPMMHTVCLVWANCKYYQGPMAMEPVPKHNVVSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIISKILSVS
Disordered region (IsUnstruct)
**************FLSPMMHTVCLVWANCKYYQGPMAME****************************************AEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIISKIL***
Disordered Region (DISOPRED)
****************************************************************TWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIISKILSV*
Disordered Region (DISEMBL)
MDKVEGADFNEMEPFLSPMMHTVCLVWANCKYYQGPMAMEPVPKHNVVSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIISKILSVS
Disordered Region (DISPRO)
************EPFLSPMMHTVCLVWANC***************************KPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIISKILSV*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDKVEGADFNEMEPFLSPMMHTVCLVWANCKYYQGPMAMEPVPKHNVVSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIISKILSVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
Q9TW45	1192	Serine/threonine-protein	no	N/A	0.684	0.085	0.721	1e-38
A8WYE4	1088	Serine/threonine-protein	N/A	N/A	0.677	0.092	0.711	2e-38
Q9P0L2	795	Serine/threonine-protein	yes	N/A	0.577	0.108	0.825	2e-37
O08678	793	Serine/threonine-protein	yes	N/A	0.590	0.110	0.806	3e-37
Q8VHJ5	795	Serine/threonine-protein	yes	N/A	0.590	0.110	0.795	6e-37
P27448	753	MAP/microtubule affinity-	no	N/A	0.604	0.119	0.766	1e-36
Q03141	753	MAP/microtubule affinity-	no	N/A	0.657	0.130	0.727	1e-36
Q8VHF0	797	MAP/microtubule affinity-	no	N/A	0.657	0.122	0.727	1e-36
Q05512	776	Serine/threonine-protein	no	N/A	0.677	0.130	0.625	1e-32
O08679	722	Serine/threonine-protein	no	N/A	0.604	0.124	0.687	2e-32

>sp|Q9TW45|PAR1_CAEEL Serine/threonine-protein kinase par-1 OS=Caenorhabditis elegans GN=par-1 PE=1 SV=1

 Score =  158 bits (399), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/104 (72%), Positives = 86/104 (82%), Gaps = 2/104 (1%)

Query: 35   GPMAMEPVPKHNVVSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDY 94
            GP+A  P       S  +++  VKPRSLRFTWSMKTTSS  P+++  EIRKVLDAN CDY
Sbjct: 1072 GPIA--PGAGQVAPSLPIHEGDVKPRSLRFTWSMKTTSSLAPDDMMREIRKVLDANGCDY 1129

Query: 95   EQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRIS 138
            EQRER+++LCVHGDPNTDSLVQWE+EVCKLPRLSLNGVRFKRIS
Sbjct: 1130 EQRERYMILCVHGDPNTDSLVQWEMEVCKLPRLSLNGVRFKRIS 1173

Required for cytoplasmic partitioning and asymmetric cell division in early embryogenesis. Phosphorylates and restricts the asymmetry effector mex-5 (and possibly also mex-6) to the anterior cytoplasm of the zygote. Critical role in postembryonic vulval morphogenesis.
Caenorhabditis elegans (taxid: 6239)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|A8WYE4|PAR1_CAEBR Serine/threonine-protein kinase par-1 OS=Caenorhabditis briggsae GN=par-1 PE=3 SV=1

 Score =  157 bits (397), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/104 (71%), Positives = 83/104 (79%), Gaps = 3/104 (2%)

Query: 35   GPMAMEPVPKHNVVSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDY 94
            GP+     P   V      +  VKPRSLRFTWSMKTTSS  P+++  EIRKVLDAN CDY
Sbjct: 969  GPLTPGTPP---VAQAMTQEGDVKPRSLRFTWSMKTTSSLAPDDMMREIRKVLDANGCDY 1025

Query: 95   EQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRIS 138
            EQRER+++LCVHGDPNTDSLVQWE+EVCKLPRLSLNGVRFKRIS
Sbjct: 1026 EQRERYMILCVHGDPNTDSLVQWEMEVCKLPRLSLNGVRFKRIS 1069

Required for cytoplasmic partitioning and asymmetric cell division in early embryogenesis. Phosphorylates and restricts the asymmetry effector mex-5 (and possibly also mex-6) to the anterior cytoplasm of the zygote. Critical role in postembryonic vulval morphogenesis.

Caenorhabditis briggsae (taxid: 6238)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9P0L2|MARK1_HUMAN Serine/threonine-protein kinase MARK1 OS=Homo sapiens GN=MARK1 PE=1 SV=2

 Score =  154 bits (388), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/86 (82%), Positives = 76/86 (88%)

Query: 58  KPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQW 117
           KPRSLRFTWSMKTTSS DPN++  EIRKVLDANNCDYEQ+ERFLL CVHGD   DSLVQW
Sbjct: 696 KPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQW 755

Query: 118 EIEVCKLPRLSLNGVRFKRISDHIIS 143
           E+EVCKLPRLSLNGVRFKRIS   I+
Sbjct: 756 EMEVCKLPRLSLNGVRFKRISGTSIA 781

Serine/threonine-protein kinase involved in cell polarity and microtubule dynamics regulation. Phosphorylates DCX, MAP2, MAP4 and MAPT/TAU. Involved in cell polarity by phosphorylating the microtubule-associated proteins MAP2, MAP4 and MAPT/TAU at KXGS motifs, causing detachment from microtubules, and their disassembly. Involved in the regulation of neuronal migration through its dual activities in regulating cellular polarity and microtubule dynamics, possibly by phosphorylating and regulating DCX. Also acts as a positive regulator of the Wnt signaling pathway, probably by mediating phosphorylation of dishevelled proteins (DVL1, DVL2 and/or DVL3).

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 6

>sp|O08678|MARK1_RAT Serine/threonine-protein kinase MARK1 OS=Rattus norvegicus GN=Mark1 PE=1 SV=1

 Score =  154 bits (388), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/88 (80%), Positives = 76/88 (86%)

Query: 56  QVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLV 115
           + KPRSLRFTWSMKTTSS DPN++  EIRKVLDAN CDYEQRERFLL CVHGD   DSLV
Sbjct: 692 EAKPRSLRFTWSMKTTSSMDPNDMVREIRKVLDANTCDYEQRERFLLFCVHGDARQDSLV 751

Query: 116 QWEIEVCKLPRLSLNGVRFKRISDHIIS 143
           QWE+EVCKLPRLSLNGVRFKRIS   I+
Sbjct: 752 QWEMEVCKLPRLSLNGVRFKRISGTSIA 779

Serine/threonine-protein kinase involved in cell polarity and microtubule dynamics regulation. Phosphorylates DCX, MAP2, MAP4 and MAPT/TAU. Involved in cell polarity by phosphorylating the microtubule-associated proteins MAP2, MAP4 and MAPT/TAU at KXGS motifs, causing detachment from microtubules, and their disassembly. Involved in the regulation of neuronal migration through its dual activities in regulating cellular polarity and microtubule dynamics, possibly by phosphorylating and regulating DCX. Also acts as a positive regulator of the Wnt signaling pathway, probably by mediating phosphorylation of dishevelled proteins (DVL1, DVL2 and/or DVL3).

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8VHJ5|MARK1_MOUSE Serine/threonine-protein kinase MARK1 OS=Mus musculus GN=Mark1 PE=1 SV=2

 Score =  152 bits (385), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 70/88 (79%), Positives = 76/88 (86%)

Query: 56  QVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLV 115
           + KPRSLRFTWSMKTTSS DPN++  EIRKVLDAN CDYEQ+ERFLL CVHGD   DSLV
Sbjct: 694 EAKPRSLRFTWSMKTTSSMDPNDMLREIRKVLDANTCDYEQKERFLLFCVHGDARQDSLV 753

Query: 116 QWEIEVCKLPRLSLNGVRFKRISDHIIS 143
           QWE+EVCKLPRLSLNGVRFKRIS   I+
Sbjct: 754 QWEMEVCKLPRLSLNGVRFKRISGTSIA 781

Serine/threonine-protein kinase involved in cell polarity and microtubule dynamics regulation. Phosphorylates DCX, MAP2, MAP4 and MAPT/TAU. Involved in cell polarity by phosphorylating the microtubule-associated proteins MAP2, MAP4 and MAPT/TAU at KXGS motifs, causing detachment from microtubules, and their disassembly. Involved in the regulation of neuronal migration through its dual activities in regulating cellular polarity and microtubule dynamics, possibly by phosphorylating and regulating DCX. Also acts as a positive regulator of the Wnt signaling pathway, probably by mediating phosphorylation of dishevelled proteins (DVL1, DVL2 and/or DVL3).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 6

>sp|P27448|MARK3_HUMAN MAP/microtubule affinity-regulating kinase 3 OS=Homo sapiens GN=MARK3 PE=1 SV=4

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/90 (76%), Positives = 78/90 (86%)

Query: 54  DDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDS 113
           + + KPRSLRFTWSMKTTSS DP ++  EIRKVLDANNCDYEQRERFLL CVHGD + ++
Sbjct: 650 NKEAKPRSLRFTWSMKTTSSMDPGDMMREIRKVLDANNCDYEQRERFLLFCVHGDGHAEN 709

Query: 114 LVQWEIEVCKLPRLSLNGVRFKRISDHIIS 143
           LVQWE+EVCKLPRLSLNGVRFKRIS   I+
Sbjct: 710 LVQWEMEVCKLPRLSLNGVRFKRISGTSIA 739

Involved in the specific phosphorylation of microtubule-associated proteins for tau, MAP2 and MAP4. Phosphorylates CDC25C on 'Ser-216'. Regulates localization and activity of some histone deacetylases by mediating phosphorylation of HDAC7, promoting subsequent interaction between HDAC7 and 14-3-3 and export from the nucleus.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q03141|MARK3_MOUSE MAP/microtubule affinity-regulating kinase 3 OS=Mus musculus GN=Mark3 PE=1 SV=2

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/99 (72%), Positives = 84/99 (84%), Gaps = 1/99 (1%)

Query: 46  NVVSNAVNDD-QVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLC 104
           NV S   +++ + KPRSLRFTWSMKTTSS DP+++  EIRKVLDANNCDYEQRERFLL C
Sbjct: 641 NVSSEQKDENREAKPRSLRFTWSMKTTSSMDPSDMMREIRKVLDANNCDYEQRERFLLFC 700

Query: 105 VHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIIS 143
           VHGD + ++LVQWE+EVCKLPRLSLNGVRFKRIS   I+
Sbjct: 701 VHGDGHAENLVQWEMEVCKLPRLSLNGVRFKRISGTSIA 739

Involved in the specific phosphorylation of microtubule-associated proteins for tau, MAP2 and MAP4. Phosphorylates CDC25C. Regulates localization and activity of some histone deacetylases by mediating phosphorylation of HDAC7, promoting subsequent interaction between HDAC7 and 14-3-3 and export from the nucleus.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VHF0|MARK3_RAT MAP/microtubule affinity-regulating kinase 3 OS=Rattus norvegicus GN=Mark3 PE=2 SV=1

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/99 (72%), Positives = 83/99 (83%), Gaps = 1/99 (1%)

Query: 46  NVVSNAVNDD-QVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLC 104
           NV S   +++ + KPRSLRFTWSMKTTSS DP+++  EIRKVLDAN CDYEQRERFLL C
Sbjct: 685 NVSSEQKDENREAKPRSLRFTWSMKTTSSMDPSDMMREIRKVLDANTCDYEQRERFLLFC 744

Query: 105 VHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIIS 143
           VHGD + +SLVQWE+EVCKLPRLSLNGVRFKRIS   I+
Sbjct: 745 VHGDGHAESLVQWEMEVCKLPRLSLNGVRFKRISGTSIA 783

Involved in the specific phosphorylation of microtubule-associated proteins for tau, MAP2 and MAP4. Phosphorylates CDC25C. Regulates localization and activity of some histone deacetylases by mediating phosphorylation of HDAC7, promoting subsequent interaction between HDAC7 and 14-3-3 and export from the nucleus.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q05512|MARK2_MOUSE Serine/threonine-protein kinase MARK2 OS=Mus musculus GN=Mark2 PE=1 SV=3

 Score =  138 bits (348), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 81/112 (72%), Gaps = 11/112 (9%)

Query: 45  HNVVSNAVNDD-----QVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRER 99
           H V S   + D     + KPRSLRFTWSMKTTSS +PNE+  EIRKVLDAN+C  E  ER
Sbjct: 659 HVVGSGGTDKDKEEFREAKPRSLRFTWSMKTTSSMEPNEMMREIRKVLDANSCQSELHER 718

Query: 100 FLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISD------HIISKI 145
           ++LLCVHG P  ++ VQWE+EVCKLPRLSLNGVRFKRIS       +I SKI
Sbjct: 719 YMLLCVHGTPGHENFVQWEMEVCKLPRLSLNGVRFKRISGTSMAFKNIASKI 770

Serine/threonine-protein kinase involved in cell polarity and microtubule dynamics regulation. Phosphorylates CRTC2/TORC2, DCX, HDAC7, KIF13B, MAP2, MAP4, MAPT/TAU and RAB11FIP2. Plays a key role in cell polarity by phosphorylating the microtubule-associated proteins MAP2, MAP4 and MAPT/TAU at KXGS motifs, causing detachment from microtubules, and their disassembly. Regulates epithelial cell polarity by phosphorylating RAB11FIP2. Involved in the regulation of neuronal migration through its dual activities in regulating cellular polarity and microtubule dynamics, possibly by phosphorylating and regulating DCX. Regulates axogenesis by phosphorylating KIF13B, promoting interaction between KIF13B and 14-3-3 and inhibiting microtubule-dependent accumulation of KIF13B. Also required for neurite outgrowth and establishment of neuronal polarity. Regulates localization and activity of some histone deacetylases by mediating phosphorylation of HDAC7, promoting subsequent interaction between HDAC7 and 14-3-3 and export from the nucleus. Also acts as a positive regulator of the Wnt signaling pathway, probably by mediating phosphorylation of dishevelled proteins (DVL1, DVL2 and/or DVL3). Modulates the developmental decision to build a columnar versus a hepatic epithelial cell apparently by promoting a switch from a direct to a transcytotic mode of apical protein delivery. Essential for the asymmetric development of membrane domains of polarized epithelial cells.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 6

>sp|O08679|MARK2_RAT Serine/threonine-protein kinase MARK2 OS=Rattus norvegicus GN=Mark2 PE=1 SV=1

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/96 (68%), Positives = 76/96 (79%), Gaps = 6/96 (6%)

Query: 56  QVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLV 115
           + KPRSLRFTWSMKTTSS +PNE+  EIRKVLDAN+C  E  ER++LLCVHG P  ++ V
Sbjct: 621 EAKPRSLRFTWSMKTTSSMEPNEMMREIRKVLDANSCQSELHERYMLLCVHGTPGHENFV 680

Query: 116 QWEIEVCKLPRLSLNGVRFKRISD------HIISKI 145
           QWE+EVCKLPRLSLNGVRFKRIS       +I SKI
Sbjct: 681 QWEMEVCKLPRLSLNGVRFKRISGTSMAFKNIASKI 716

Serine/threonine-protein kinase involved in cell polarity and microtubule dynamics regulation. Phosphorylates CRTC2/TORC2, DCX, HDAC7, KIF13B, MAP2, MAP4, MAPT/TAU and RAB11FIP2. Plays a key role in cell polarity by phosphorylating the microtubule-associated proteins MAP2, MAP4 and MAPT/TAU at KXGS motifs, causing detachment from microtubules, and their disassembly. Regulates epithelial cell polarity by phosphorylating RAB11FIP2. Involved in the regulation of neuronal migration through its dual activities in regulating cellular polarity and microtubule dynamics, possibly by phosphorylating and regulating DCX. Regulates axogenesis by phosphorylating KIF13B, promoting interaction between KIF13B and 14-3-3 and inhibiting microtubule-dependent accumulation of KIF13B. Also required for neurite outgrowth and establishment of neuronal polarity. Regulates localization and activity of some histone deacetylases by mediating phosphorylation of HDAC7, promoting subsequent interaction between HDAC7 and 14-3-3 and export from the nucleus. Also acts as a positive regulator of the Wnt signaling pathway, probably by mediating phosphorylation of dishevelled proteins (DVL1, DVL2 and/or DVL3). Modulates the developmental decision to build a columnar versus a hepatic epithelial cell apparently by promoting a switch from a direct to a transcytotic mode of apical protein delivery. Essential for the asymmetric development of membrane domains of polarized epithelial cells.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
328722304	1314	PREDICTED: MAP/microtubule affinity-regu	0.765	0.086	0.808	1e-48
328722306	941	PREDICTED: MAP/microtubule affinity-regu	0.765	0.121	0.808	2e-48
321475182	833	hypothetical protein DAPPUDRAFT_313175 [	0.583	0.104	0.965	3e-45
189235757	779	PREDICTED: similar to par-1 CG8201-PA [T	0.644	0.123	0.895	7e-45
270004818	1121	par-1 [Tribolium castaneum]	0.644	0.085	0.895	9e-45
328791600	1127	PREDICTED: serine/threonine-protein kina	0.859	0.113	0.689	1e-43
380028692	960	PREDICTED: serine/threonine-protein kina	0.859	0.133	0.689	2e-43
332029794	1187	Serine/threonine-protein kinase MARK2 [A	0.859	0.107	0.689	2e-43
307205332	1209	Serine/threonine-protein kinase MARK2 [H	0.859	0.105	0.689	3e-43
241852080	841	map/microtubule affinity-regulating kina	0.651	0.115	0.836	3e-43

>gi|328722304|ref|XP_003247537.1| PREDICTED: MAP/microtubule affinity-regulating kinase 3-like isoform 1 [Acyrthosiphon pisum]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/115 (80%), Positives = 102/115 (88%), Gaps = 1/115 (0%)

Query: 29   NCKYYQGPMAMEPVPKHNVVSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLD 88
            + K+ + PM    +PK+N+VSN VNDDQ+KPRSLRFTWSMKTTS+RDPNEI AEIR+VLD
Sbjct: 1187 SSKFVKRPMDQN-LPKNNIVSNTVNDDQMKPRSLRFTWSMKTTSTRDPNEIMAEIREVLD 1245

Query: 89   ANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIIS 143
            ANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRIS   I 
Sbjct: 1246 ANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISGTSIG 1300

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328722306|ref|XP_003247538.1| PREDICTED: MAP/microtubule affinity-regulating kinase 3-like isoform 2 [Acyrthosiphon pisum]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/115 (80%), Positives = 102/115 (88%), Gaps = 1/115 (0%)

Query: 29  NCKYYQGPMAMEPVPKHNVVSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLD 88
           + K+ + PM    +PK+N+VSN VNDDQ+KPRSLRFTWSMKTTS+RDPNEI AEIR+VLD
Sbjct: 814 SSKFVKRPMDQN-LPKNNIVSNTVNDDQMKPRSLRFTWSMKTTSTRDPNEIMAEIREVLD 872

Query: 89  ANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIIS 143
           ANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRIS   I 
Sbjct: 873 ANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISGTSIG 927

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321475182|gb|EFX86145.1| hypothetical protein DAPPUDRAFT_313175 [Daphnia pulex]

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 84/87 (96%), Positives = 85/87 (97%)

Query: 52  VNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNT 111
           VNDDQVKPRSLRFTWSMKTTSSRDPNEI  EIRKVLDANNCDYEQRER+LLLCVHGDPNT
Sbjct: 728 VNDDQVKPRSLRFTWSMKTTSSRDPNEIMMEIRKVLDANNCDYEQRERYLLLCVHGDPNT 787

Query: 112 DSLVQWEIEVCKLPRLSLNGVRFKRIS 138
           DSLVQWEIEVCKLPRLSLNGVRFKRIS
Sbjct: 788 DSLVQWEIEVCKLPRLSLNGVRFKRIS 814

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235757|ref|XP_968516.2| PREDICTED: similar to par-1 CG8201-PA [Tribolium castaneum]

 Score =  185 bits (469), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 86/96 (89%), Positives = 87/96 (90%)

Query: 48  VSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHG 107
              A NDDQVKPRSLRFTWSMKTTSSRDP+EI AEIRKVLDANNCDYEQRERFLLLCVHG
Sbjct: 670 AGGAQNDDQVKPRSLRFTWSMKTTSSRDPSEIMAEIRKVLDANNCDYEQRERFLLLCVHG 729

Query: 108 DPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIIS 143
           DPNTDSLVQWEIEVCKLPRLSLNGVRFKRIS   I 
Sbjct: 730 DPNTDSLVQWEIEVCKLPRLSLNGVRFKRISGTSIG 765

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004818|gb|EFA01266.1| par-1 [Tribolium castaneum]

 Score =  184 bits (467), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 86/96 (89%), Positives = 87/96 (90%)

Query: 48   VSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHG 107
               A NDDQVKPRSLRFTWSMKTTSSRDP+EI AEIRKVLDANNCDYEQRERFLLLCVHG
Sbjct: 1012 AGGAQNDDQVKPRSLRFTWSMKTTSSRDPSEIMAEIRKVLDANNCDYEQRERFLLLCVHG 1071

Query: 108  DPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIIS 143
            DPNTDSLVQWEIEVCKLPRLSLNGVRFKRIS   I 
Sbjct: 1072 DPNTDSLVQWEIEVCKLPRLSLNGVRFKRISGTSIG 1107

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791600|ref|XP_394194.4| PREDICTED: serine/threonine-protein kinase MARK2 isoform 1 [Apis mellifera]

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/129 (68%), Positives = 97/129 (75%), Gaps = 1/129 (0%)

Query: 16   LSPMMHTVCLVWANCKYYQGPMAMEPVPKHNVVSNAV-NDDQVKPRSLRFTWSMKTTSSR 74
            +SP+         + ++ + PM     PKH VVS A  ND+QVKPRSLRFTWSMKTTSSR
Sbjct: 985  ISPLARPSFFSKLSSRFSKRPMDPSVPPKHPVVSGATTNDEQVKPRSLRFTWSMKTTSSR 1044

Query: 75   DPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRF 134
            DPNEI +EIRKVLDAN C YEQRERFLLLC HGD  TDS VQWEIEVCKLPRLSLNGVRF
Sbjct: 1045 DPNEIMSEIRKVLDANKCQYEQRERFLLLCAHGDAATDSQVQWEIEVCKLPRLSLNGVRF 1104

Query: 135  KRISDHIIS 143
            KRIS   I 
Sbjct: 1105 KRISGTSIG 1113

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028692|ref|XP_003698025.1| PREDICTED: serine/threonine-protein kinase MARK2-like [Apis florea]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/129 (68%), Positives = 97/129 (75%), Gaps = 1/129 (0%)

Query: 16  LSPMMHTVCLVWANCKYYQGPMAMEPVPKHNVVSNAV-NDDQVKPRSLRFTWSMKTTSSR 74
           +SP+         + ++ + PM     PKH VVS A  ND+QVKPRSLRFTWSMKTTSSR
Sbjct: 818 ISPLARPSFFSKLSSRFSKRPMDPSVPPKHPVVSGATTNDEQVKPRSLRFTWSMKTTSSR 877

Query: 75  DPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRF 134
           DPNEI +EIRKVLDAN C YEQRERFLLLC HGD  TDS VQWEIEVCKLPRLSLNGVRF
Sbjct: 878 DPNEIMSEIRKVLDANKCQYEQRERFLLLCAHGDAATDSQVQWEIEVCKLPRLSLNGVRF 937

Query: 135 KRISDHIIS 143
           KRIS   I 
Sbjct: 938 KRISGTSIG 946

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029794|gb|EGI69663.1| Serine/threonine-protein kinase MARK2 [Acromyrmex echinatior]

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/129 (68%), Positives = 97/129 (75%), Gaps = 1/129 (0%)

Query: 16   LSPMMHTVCLVWANCKYYQGPMAMEPVPKHNVVSNAV-NDDQVKPRSLRFTWSMKTTSSR 74
            +SP+         + K+ + PM     PKH VVS A  ND+QVKPRSLRFTWSMKTTSSR
Sbjct: 1045 ISPLARPSFFSKLSSKFSKRPMDPSVPPKHLVVSGATTNDEQVKPRSLRFTWSMKTTSSR 1104

Query: 75   DPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRF 134
            DPNEI +EIRKVLDAN C YEQRERFLLLC HG+  TDS VQWEIEVCKLPRLSLNGVRF
Sbjct: 1105 DPNEIMSEIRKVLDANKCQYEQRERFLLLCAHGEAATDSQVQWEIEVCKLPRLSLNGVRF 1164

Query: 135  KRISDHIIS 143
            KRIS   I 
Sbjct: 1165 KRISGTSIG 1173

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205332|gb|EFN83680.1| Serine/threonine-protein kinase MARK2 [Harpegnathos saltator]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 89/129 (68%), Positives = 97/129 (75%), Gaps = 1/129 (0%)

Query: 16   LSPMMHTVCLVWANCKYYQGPMAMEPVPKHNVVSNAV-NDDQVKPRSLRFTWSMKTTSSR 74
            +SP+         + K+ + PM     PKH VVS A  ND+QVKPRSLRFTWSMKTTSSR
Sbjct: 1067 ISPLARPSFFSKLSSKFSKRPMDPSVPPKHPVVSGATTNDEQVKPRSLRFTWSMKTTSSR 1126

Query: 75   DPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRF 134
            DPNEI +EIRKVLDAN C YEQRERFLLLC HG+  TDS VQWEIEVCKLPRLSLNGVRF
Sbjct: 1127 DPNEIMSEIRKVLDANKCQYEQRERFLLLCAHGEAATDSQVQWEIEVCKLPRLSLNGVRF 1186

Query: 135  KRISDHIIS 143
            KRIS   I 
Sbjct: 1187 KRISGTSIG 1195

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241852080|ref|XP_002415812.1| map/microtubule affinity-regulating kinase 2,4, putative [Ixodes scapularis] gi|215510026|gb|EEC19479.1| map/microtubule affinity-regulating kinase 2,4, putative [Ixodes scapularis]

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 82/98 (83%), Positives = 90/98 (91%), Gaps = 1/98 (1%)

Query: 41  PVPKHNVVSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERF 100
           P+P+  + +  +N++QVKPRSLRFTWSMKTTSSRDPNEI  EIRKVLD NNCDYEQRE+F
Sbjct: 726 PMPRE-LRTRGLNEEQVKPRSLRFTWSMKTTSSRDPNEIMQEIRKVLDRNNCDYEQREKF 784

Query: 101 LLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRIS 138
           LLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRIS
Sbjct: 785 LLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRIS 822

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
UNIPROTKB|Q9TW45	1192	par-1 "Serine/threonine-protei	0.684	0.085	0.721	2.1e-35
WB|WBGene00003916	1200	par-1 [Caenorhabditis elegans	0.684	0.085	0.721	2.2e-35
ZFIN|ZDB-GENE-060929-80	754	zgc:153725 "zgc:153725" [Danio	0.543	0.107	0.864	1.1e-34
UNIPROTKB|A2SY06	331	MARK3 "MAP/microtubule affinit	0.624	0.280	0.744	3.6e-34
UNIPROTKB|H0YIY6	505	MARK3 "MAP/microtubule affinit	0.624	0.184	0.744	3.6e-34
UNIPROTKB|J9P3Y6	685	MARK1 "Uncharacterized protein	0.543	0.118	0.864	4.3e-34
UNIPROTKB|E1BRA3	729	MARK3 "Uncharacterized protein	0.624	0.127	0.755	5.4e-34
UNIPROTKB|I3LBZ2	774	MARK1 "Uncharacterized protein	0.543	0.104	0.864	6.5e-34
UNIPROTKB|G5E5D4	786	MARK1 "Uncharacterized protein	0.543	0.103	0.864	6.8e-34
UNIPROTKB|F1Q1P8	795	MARK1 "Uncharacterized protein	0.543	0.101	0.864	7e-34

UNIPROTKB|Q9TW45 par-1 "Serine/threonine-protein kinase par-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 389 (142.0 bits), Expect = 2.1e-35, Sum P(2) = 2.1e-35
 Identities = 75/104 (72%), Positives = 86/104 (82%)

Query:    35 GPMAMEPVPKHNVVSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDY 94
             GP+A  P       S  +++  VKPRSLRFTWSMKTTSS  P+++  EIRKVLDAN CDY
Sbjct:  1072 GPIA--PGAGQVAPSLPIHEGDVKPRSLRFTWSMKTTSSLAPDDMMREIRKVLDANGCDY 1129

Query:    95 EQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRIS 138
             EQRER+++LCVHGDPNTDSLVQWE+EVCKLPRLSLNGVRFKRIS
Sbjct:  1130 EQRERYMILCVHGDPNTDSLVQWEMEVCKLPRLSLNGVRFKRIS 1173

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00003916 par-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 389 (142.0 bits), Expect = 2.2e-35, Sum P(2) = 2.2e-35
 Identities = 75/104 (72%), Positives = 86/104 (82%)

Query:    35 GPMAMEPVPKHNVVSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDY 94
             GP+A  P       S  +++  VKPRSLRFTWSMKTTSS  P+++  EIRKVLDAN CDY
Sbjct:  1080 GPIA--PGAGQVAPSLPIHEGDVKPRSLRFTWSMKTTSSLAPDDMMREIRKVLDANGCDY 1137

Query:    95 EQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRIS 138
             EQRER+++LCVHGDPNTDSLVQWE+EVCKLPRLSLNGVRFKRIS
Sbjct:  1138 EQRERYMILCVHGDPNTDSLVQWEMEVCKLPRLSLNGVRFKRIS 1181

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS;IMP;IDA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0045167 "asymmetric protein localization involved in cell fate determination" evidence=IMP

GO:0009949 "polarity specification of anterior/posterior axis" evidence=TAS

GO:0040025 "vulval development" evidence=IMP

GO:0009880 "embryonic pattern specification" evidence=IGI;IMP

GO:0016020 "membrane" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0007163 "establishment or maintenance of cell polarity" evidence=IMP

GO:0018105 "peptidyl-serine phosphorylation" evidence=IMP;IDA

GO:0055059 "asymmetric neuroblast division" evidence=IGI

ZFIN|ZDB-GENE-060929-80 zgc:153725 "zgc:153725" [Danio rerio (taxid:7955)]

 Score = 374 (136.7 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
 Identities = 70/81 (86%), Positives = 75/81 (92%)

Query:    58 KPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQW 117
             KPRSLRFTWSMKTTSS +P E+  EIRKVLDANNCDYEQRERFLLLCVHGD + +SLVQW
Sbjct:   655 KPRSLRFTWSMKTTSSMEPTEMMREIRKVLDANNCDYEQRERFLLLCVHGDGHAESLVQW 714

Query:   118 EIEVCKLPRLSLNGVRFKRIS 138
             E+EVCKLPRLSLNGVRFKRIS
Sbjct:   715 EMEVCKLPRLSLNGVRFKRIS 735

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

UNIPROTKB|A2SY06 MARK3 "MAP/microtubule affinity-regulating kinase 3" [Homo sapiens (taxid:9606)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 70/94 (74%), Positives = 81/94 (86%)

Query:    46 NVVSNAVNDD-QVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLC 104
             NV +   +++ + KPRSLRFTWSMKTTSS DP ++  EIRKVLDANNCDYEQRERFLL C
Sbjct:   219 NVSAEQKDENKEAKPRSLRFTWSMKTTSSMDPGDMMREIRKVLDANNCDYEQRERFLLFC 278

Query:   105 VHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRIS 138
             VHGD + ++LVQWE+EVCKLPRLSLNGVRFKRIS
Sbjct:   279 VHGDGHAENLVQWEMEVCKLPRLSLNGVRFKRIS 312

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|H0YIY6 MARK3 "MAP/microtubule affinity-regulating kinase 3" [Homo sapiens (taxid:9606)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 70/94 (74%), Positives = 81/94 (86%)

Query:    46 NVVSNAVNDD-QVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLC 104
             NV +   +++ + KPRSLRFTWSMKTTSS DP ++  EIRKVLDANNCDYEQRERFLL C
Sbjct:   393 NVSAEQKDENKEAKPRSLRFTWSMKTTSSMDPGDMMREIRKVLDANNCDYEQRERFLLFC 452

Query:   105 VHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRIS 138
             VHGD + ++LVQWE+EVCKLPRLSLNGVRFKRIS
Sbjct:   453 VHGDGHAENLVQWEMEVCKLPRLSLNGVRFKRIS 486

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|J9P3Y6 MARK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 377 (137.8 bits), Expect = 4.3e-34, P = 4.3e-34
 Identities = 70/81 (86%), Positives = 74/81 (91%)

Query:    58 KPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQW 117
             KPRSLRFTWSMKTTSS DPN++  EIRKVLDANNCDYEQ+ERFLL CVHGD   DSLVQW
Sbjct:   586 KPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQW 645

Query:   118 EIEVCKLPRLSLNGVRFKRIS 138
             E+EVCKLPRLSLNGVRFKRIS
Sbjct:   646 EMEVCKLPRLSLNGVRFKRIS 666

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|E1BRA3 MARK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 377 (137.8 bits), Expect = 5.4e-34, P = 5.4e-34
 Identities = 71/94 (75%), Positives = 82/94 (87%)

Query:    46 NVVSNAVNDD-QVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLC 104
             NV  +  +++ + KPRSLRFTWSMKTTSS DPN++  EIRKVLDANNCDYEQRERFLL C
Sbjct:   617 NVAVDQKDENKEAKPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQRERFLLFC 676

Query:   105 VHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRIS 138
             VHGD + ++LVQWE+EVCKLPRLSLNGVRFKRIS
Sbjct:   677 VHGDGHAENLVQWEMEVCKLPRLSLNGVRFKRIS 710

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|I3LBZ2 MARK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 377 (137.8 bits), Expect = 6.5e-34, P = 6.5e-34
 Identities = 70/81 (86%), Positives = 74/81 (91%)

Query:    58 KPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQW 117
             KPRSLRFTWSMKTTSS DPN++  EIRKVLDANNCDYEQ+ERFLL CVHGD   DSLVQW
Sbjct:   675 KPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQW 734

Query:   118 EIEVCKLPRLSLNGVRFKRIS 138
             E+EVCKLPRLSLNGVRFKRIS
Sbjct:   735 EMEVCKLPRLSLNGVRFKRIS 755

GO:0070300 "phosphatidic acid binding" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0001786 "phosphatidylserine binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

UNIPROTKB|G5E5D4 MARK1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 377 (137.8 bits), Expect = 6.8e-34, P = 6.8e-34
 Identities = 70/81 (86%), Positives = 74/81 (91%)

Query:    58 KPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQW 117
             KPRSLRFTWSMKTTSS DPN++  EIRKVLDANNCDYEQ+ERFLL CVHGD   DSLVQW
Sbjct:   687 KPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQW 746

Query:   118 EIEVCKLPRLSLNGVRFKRIS 138
             E+EVCKLPRLSLNGVRFKRIS
Sbjct:   747 EMEVCKLPRLSLNGVRFKRIS 767

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|F1Q1P8 MARK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 377 (137.8 bits), Expect = 7.0e-34, P = 7.0e-34
 Identities = 70/81 (86%), Positives = 74/81 (91%)

Query:    58 KPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQW 117
             KPRSLRFTWSMKTTSS DPN++  EIRKVLDANNCDYEQ+ERFLL CVHGD   DSLVQW
Sbjct:   696 KPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQW 755

Query:   118 EIEVCKLPRLSLNGVRFKRIS 138
             E+EVCKLPRLSLNGVRFKRIS
Sbjct:   756 EMEVCKLPRLSLNGVRFKRIS 776

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O08678	MARK1_RAT	2, ., 7, ., 1, 1, ., 2, 6	0.8068	0.5906	0.1109	yes	N/A
Q9P0L2	MARK1_HUMAN	2, ., 7, ., 1, 1, ., 2, 6	0.8255	0.5771	0.1081	yes	N/A
Q8VHJ5	MARK1_MOUSE	2, ., 7, ., 1, 1, ., 2, 6	0.7954	0.5906	0.1106	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	149
cd12196	98	cd12196, MARK1-3_C, C-terminal, kinase associated	3e-59
cd12201	99	cd12201, MARK2_C, C-terminal, kinase associated do	2e-45
cd12121	96	cd12121, MARK_C_like, C-terminal kinase associated	1e-38
cd12120	95	cd12120, AMPKA_C_like, C-terminal regulatory domai	9e-22
cd12197	99	cd12197, MARK4_C, C-terminal, kinase associated do	1e-20
cd12198	96	cd12198, MELK_C, C-terminal kinase associated doma	1e-10
pfam02149	46	pfam02149, KA1, Kinase associated domain 1	3e-09
pfam08385	577	pfam08385, DHC_N1, Dynein heavy chain, N-terminal	6e-04

>gnl|CDD|213381 cd12196, MARK1-3_C, C-terminal, kinase associated domain 1 (KA1), a phospholipid binding domain, of microtubule affinity-regulating kinases 1-3

 Score =  178 bits (453), Expect = 3e-59
 Identities = 76/94 (80%), Positives = 80/94 (85%), Gaps = 6/94 (6%)

Query: 58  KPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQW 117
           KPRSLRFTWSMKTTSS DPN++  EIRKVLDANNCDYEQRERFLL CVHGD  TDSLVQW
Sbjct: 1   KPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQRERFLLFCVHGDGRTDSLVQW 60

Query: 118 EIEVCKLPRLSLNGVRFKRIS------DHIISKI 145
           E+EVCKLPRLSLNGVRFKRIS       +I SKI
Sbjct: 61  EMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKI 94

Microtubule-associated protein/microtubule affinity regulating kinases (MARKs), also called partition-defective (Par-1) kinases, are serine/threonine protein kinases (STKs) that catalyze the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. They phosphorylate the tau protein and related microtubule-associated proteins (MAPs) on tubulin binding sites to induce detachment from microtubules, and are involved in the regulation of cell shape and polarity, cell cycle control, transport, and the cytoskeleton. Mammals contain four proteins, MARK1-4, encoded by distinct genes belonging to this subfamily, with additional isoforms arising from alternative splicing. MARK1/2, through their activation by death-associated protein kinase (DAPK), modulates polarized neurite outgrowth. MARK1, also called Par-1c, is also involved in axon-dendrite specification, and SNPs on the MARK1 gene is associated with autism spectrum disorders. MARK2, also called Par-1b, is implicated in many physiological processes including fertility, immune system homeostasis, learning and memory, growth, and metabolism. MARK3, also called Par-1a, is implicated in gluconeogenesis and adiposity; mice deficient with MARK3 display reduced adiposity, resistance to hepatic steatosis, and defective gluconeogensis. MARKs contain an N-terminal catalytic kinase domain, a ubiquitin-associated domain (UBA), and a C-terminal kinase associated domain (KA1). The KA1 domain binds anionic phospholipids and may be involved in membrane localization as well as in auto-inhibition of the kinase domain. Length = 98

>gnl|CDD|213386 cd12201, MARK2_C, C-terminal, kinase associated domain 1 (KA1), a phospholipid binding domain, of microtubule affinity-regulating kinase 2

 Score =  143 bits (361), Expect = 2e-45
 Identities = 63/81 (77%), Positives = 71/81 (87%)

Query: 58  KPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQW 117
           KPRSLRFTWSMKTTSS +PNE+  EIRKVLDANNC YE +E+++LLC+HG P  D  VQW
Sbjct: 1   KPRSLRFTWSMKTTSSMEPNEMMKEIRKVLDANNCQYELQEKYMLLCMHGTPGHDDFVQW 60

Query: 118 EIEVCKLPRLSLNGVRFKRIS 138
           E+EVCKLPRLSLNGVRFKRIS
Sbjct: 61  EMEVCKLPRLSLNGVRFKRIS 81

Microtubule-associated protein/microtubule affinity regulating kinases (MARKs), also called partition-defective (Par-1) kinases, are serine/threonine protein kinases (STKs) that catalyze the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. They phosphorylate the tau protein and related microtubule-associated proteins (MAPs) on tubulin binding sites to induce detachment from microtubules, and are involved in the regulation of cell shape and polarity, cell cycle control, transport, and the cytoskeleton. Mammals contain four proteins, MARK1-4, encoded by distinct genes belonging to this subfamily, with additional isoforms arising from alternative splicing. MARK2, also called Par-1b or ELKL motif kinase 1 (EMK-1), is implicated in many physiological processes including fertility, immune system homeostasis, learning and memory, growth, and metabolism. It also regulates axon formation and has been implicated in neurodegeneration. MARKs contain an N-terminal catalytic kinase domain, a ubiquitin-associated domain (UBA), and a C-terminal kinase associated domain (KA1). The KA1 domain binds anionic phospholipids and may be involved in membrane localization as well as in auto-inhibition of the kinase domain. Length = 99

>gnl|CDD|213377 cd12121, MARK_C_like, C-terminal kinase associated domain 1 (KA1), a phospholipid binding domain, of microtubule affinity-regulating kinases, and similar domains

 Score =  125 bits (317), Expect = 1e-38
 Identities = 48/94 (51%), Positives = 63/94 (67%), Gaps = 6/94 (6%)

Query: 60  RSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEI 119
           RSLR  +S+ TTS++ P EI  EI++VL +N  DYE+   +LL C HGD +    V +EI
Sbjct: 1   RSLRGPFSVATTSTKSPEEIMNEIKRVLRSNGIDYEEVGGYLLECKHGDSSGGEFVIFEI 60

Query: 120 EVCKLPRLSLNGVRFKRIS-DH-----IISKILS 147
           E+CKLPRL LNG+RFKRIS D      +  KIL+
Sbjct: 61  EICKLPRLGLNGIRFKRISGDSWQYKRLCKKILN 94

Microtubule-associated protein/microtubule affinity regulating kinases (MARKs), also called partition-defective (Par-1) kinases, are serine/threonine protein kinases (STKs) that catalyze the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. They phosphorylate the tau protein and related microtubule-associated proteins (MAPs) on tubulin binding sites to induce detachment from microtubules, and are involved in the regulation of cell shape and polarity, cell cycle control, transport, and the cytoskeleton. Mammals contain four proteins, MARK1-4, encoded by distinct genes belonging to this subfamily, with additional isoforms arising from alternative splicing. In yeast, MARK/Par-1 homologs are called Kin1/2 kinases. Kin1 is a membrane-associated kinase that is involved in regulating cytokinesis and the cell surface. MARKs contain an N-terminal catalytic kinase domain, a ubiquitin-associated domain (UBA), and a C-terminal kinase associated domain (KA1). The KA1 domain binds anionic phospholipids and may be involved in membrane localization as well as in auto-inhibition of the kinase domain. Length = 96

>gnl|CDD|213376 cd12120, AMPKA_C_like, C-terminal regulatory domain of 5'-AMP-activated protein kinase (AMPK) alpha subunit and similar domains

 Score = 83.0 bits (205), Expect = 9e-22
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 63  RFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRER-FLLLCVHGDPN--TDSLVQWEI 119
           R  W ++  S  DP+EI   I KVL+    +   R   F++     + +        +EI
Sbjct: 1   RKKWELEIHSRIDPSEIYEGIHKVLEGWGKNLVFRITNFIITGKLVNDHILFLRSTLFEI 60

Query: 120 EVCKLPRLSLNGVRFKRIS 138
           EV ++    L  V FK+ +
Sbjct: 61  EVYEVGP-GLFMVDFKKKT 78

This family is composed of AMPKs, microtubule-associated protein/microtubule affinity regulating kinases (MARKs), yeast Kcc4p-like proteins, plant calcineurin B-Like (CBL)-interacting protein kinases (CIPKs), and similar proteins. They are serine/threonine protein kinases (STKs) that catalyze the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. AMPKs act as sensors for the energy status of the cell and are activated by cellular stresses that lead to ATP depletion such as hypoxia, heat shock, and glucose deprivation, among others. MARKs phosphorylate the tau protein and related microtubule-associated proteins (MAPs) on tubulin binding sites to induce detachment from microtubules, and are involved in the regulation of cell shape and polarity, cell cycle control, transport, and the cytoskeleton. Kcc4p and related proteins are septin-associated proteins that are involved in septin organization and in the yeast morphogenesis checkpoint coordinating the cell cycle with bud formation. CIPKs interact with the calcineurin B-like (CBL) calcium sensors to form a signaling network that decode specific calcium signals triggered by a variety of environmental stimuli including salinity, drought, cold, light, and mechanical perturbation, among others. All members of this family contain an N-terminal catalytic kinase domain and a C-terminal regulatory domain which is also called kinase associated domain 1 (KA1) in some cases. The C-terminal regulatory domain serves as a protein interaction domain in AMPKs and CIPKs. In MARKs and Kcc4p-like proteins, this domain binds phospholipids and may be involved in membrane localization. Length = 95

>gnl|CDD|213382 cd12197, MARK4_C, C-terminal, kinase associated domain 1 (KA1), a phospholipid binding domain, of microtubule affinity-regulating kinase 4

 Score = 80.3 bits (198), Expect = 1e-20
 Identities = 39/93 (41%), Positives = 49/93 (52%), Gaps = 7/93 (7%)

Query: 60  RSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDS-LVQWE 118
           R LR  W ++  SSR P E+   +R+      C   Q   FLL C+HG   +   LV +E
Sbjct: 1   RLLRGGWDVRLRSSRPPAEVVLALREATAGCGCRVRQAGPFLLACLHGAAGSPEPLVAFE 60

Query: 119 IEVCKLPRLSLNGVRFKRIS------DHIISKI 145
            EVC+LPR  LNGVRFKR+         I SKI
Sbjct: 61  AEVCQLPRGELNGVRFKRLWGTPLAFRTIASKI 93

Microtubule-associated protein/microtubule affinity regulating kinases (MARKs), also called partition-defective (Par-1) kinases, are serine/threonine protein kinases (STKs) that catalyze the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. They phosphorylate the tau protein and related microtubule-associated proteins (MAPs) on tubulin binding sites to induce detachment from microtubules, and are involved in the regulation of cell shape and polarity, cell cycle control, transport, and the cytoskeleton. Mammals contain four proteins, MARK1-4, encoded by distinct genes belonging to this subfamily, with additional isoforms arising from alternative splicing. MARK4 has two splicing isoforms: MARK4S, predominantly expressed in the brain; and MARK4L, expressed in all tissues. Unlike MARK1-3 that show cytoplasmic localization, MARK4 colocalizes with the centrosome and with microtubules. Decreased MARK4 expression in the brain may be involved in the pathogenesis of Prion diseases and may be correlated to PrP(Sc) deposits. MARK4 is also a component of the ectoplasmic specialization, a testis-specific adherens junction. MARKs contain an N-terminal catalytic kinase domain, a ubiquitin-associated domain (UBA), and a C-terminal kinase associated domain (KA1). The KA1 domain binds anionic phospholipids and may be involved in membrane localization as well as in auto-inhibition of the kinase domain. Length = 99

>gnl|CDD|213383 cd12198, MELK_C, C-terminal kinase associated domain 1 (KA1) of Maternal embryonic leucine zipper kinase

 Score = 54.5 bits (132), Expect = 1e-10
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 67  SMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPR 126
           ++ TTSS+DP ++  E+++VL     D +Q+  + L C   D      + +E+EVC+LP 
Sbjct: 8   NVSTTSSKDPEQVLNELKRVLAKKGIDCKQK-GYTLRCKTKDDFGKVKLTFELEVCRLPG 66

Query: 127 LS-LNGVRFKRI 137
           L  + G+R KR+
Sbjct: 67  LDEVVGIRRKRL 78

MELK, also called protein kinase 38 (PK38) or pEg3 kinase, is a cell cycle-regulated serine/threonine protein kinase (STK) that catalyzes the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. It is phosphorylated and maximally active during mitosis and is involved in regulating cell cycle progression, division, proliferation, tumor growth, and mRNA splicing. MELK shows a broad substrate specificity, including the zinc finger-like protein ZPR9, the transcription and splicing factor NIPP1, and the protein-tyrosine phosphatase Cdc25B, among others. MELK contains an N-terminal catalytic domain followed by a ubiquitin-associated (UBA) domain, a TP dipeptide-rich region, and a C-terminal KA1 domain. The KA1 domain of MELK, together with its TP dipeptide-rich region, functions as an autoinhibitory domain. The KA1 domain of the related microtubule affinity-regulating kinases (MARKs) has been shown to bind anionic phospholipids and may be involved in membrane localization. Length = 96

>gnl|CDD|190228 pfam02149, KA1, Kinase associated domain 1

 Score = 49.5 bits (119), Expect = 3e-09
 Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 6/42 (14%)

Query: 112 DSLVQWEIEVCKLPRLSLNGVRFKRISD------HIISKILS 147
            S+V++EIEVCKLPRL L GV FKR+S        + +KILS
Sbjct: 1   PSVVKFEIEVCKLPRLGLYGVDFKRLSGPQWQYKDLAAKILS 42

Length = 46

>gnl|CDD|219814 pfam08385, DHC_N1, Dynein heavy chain, N-terminal region 1

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 1   MDKVEGADFNEMEPFLSPMMHTVCLVWANCKYY 33
            D +   D  ++   L P+ + + L W+  KYY
Sbjct: 108 DDLLSATDLQKIREALPPIFNHLRLKWSISKYY 140

Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit. The region featured in this family includes the sequences implicated in mediating these interactions. It is thought to be flexible and not to adopt a rigid conformation. Length = 577

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
PF02149	47	KA1: Kinase associated domain 1; InterPro: IPR0017	99.57
KOG0586|consensus	596		98.44
PF08385	579	DHC_N1: Dynein heavy chain, N-terminal region 1; I	97.71

>PF02149 KA1: Kinase associated domain 1; InterPro: IPR001772 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.57  E-value=1.8e-15  Score=96.28  Aligned_cols=33  Identities=58%  Similarity=0.876  Sum_probs=29.5

Q ss_pred             cceEEEEEEEeeCCCCCceeeEEEecCccceee
Q psy2660         113 SLVQWEIEVCKLPRLSLNGVRFKRISDHIISKI  145 (149)
Q Consensus       113 ~~v~fEmEVCkLp~l~l~GIrfKRisGd~w~~~  145 (149)
                      ..|+|||||||+|+++++||+||||+||+|+|-
T Consensus         3 ~~v~fEieV~kl~~~~l~Gv~~kRi~Gd~~~yk   35 (47)
T PF02149_consen    3 EVVKFEIEVCKLPRLGLYGVDFKRISGDSWQYK   35 (47)
T ss_dssp             C-EEEEEEEEEECCCTCEEEEEEEEES-HHHHH
T ss_pred             cceEEEEEEEEecCCCeeEEEEEEeeCCHHHHH
Confidence            579999999999999999999999999999983

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. Members of the KIN2/PAR-1/MARK kinase subfamily are conserved from yeast to human and share the same domain organisation: an N-terminal kinase domain (IPR000719 from INTERPRO) and a C-terminal kinase associated domain 1 (KA1). Some members of the KIN1/PAR-1/MARK family also contain an UBA domain (IPR000449 from INTERPRO). Members of this kinase subfamily are involved in various biological processes such as cell polarity, cell cycle control, intracellular signalling, microtubule stability and protein stability []. The function of the KA1 domain is not yet known. Some proteins known to contain a KA1 domain are listed below: Mammalian MAP/microtubule affinity-regulating kinases (MARK 1,2,3). They regulate polarity in neuronal cell models and appear to function redundantly in phosphorylating MT-associated proteins and in regulating MT stability []. Mammalian maternal embryonic leucine zipper kinase (MELK). It phosphorylates ZNF622 and may contribute to its redirection to the nucleus. It may be involved in the inhibition of spliceosome assembly during mitosis. Caenorhabditis elegans and drosophila PAR-1 protein. It is required for establishing polarity in embryos where it is asymmetrically distributed []. Fungal Kin1 and Kin2 protein kinases involved in regulation of exocytosis. They localise to the cytoplasmic face of the plasma membrane []. Plant KIN10 and KIN11 proteins, catalytic subunits of the putative trimeric SNF1-related protein kinase (SnRK) complex. This entry represents the KA1 domain.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3OSE_A 1V5S_A 1UL7_A.

>KOG0586|consensus

Probab=98.44  E-value=9.3e-08  Score=87.37  Aligned_cols=53  Identities=77%  Similarity=1.303  Sum_probs=50.1

Q ss_pred             HHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCceeeEEEec
Q psy2660          80 RAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRIS  138 (149)
Q Consensus        80 ~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~GIrfKRis  138 (149)
                      +.|+++|++.++++|++.+      .|+|++....++|++|||++|++++||+||+|++
T Consensus       536 ~~~~~~v~~~~~~~~~~~~------~~~~~~a~a~~~~~~~~~~~~~~s~~g~r~~r~s  588 (596)
T KOG0586|consen  536 MREIRKVLDANGCDYEQLR------YHGDPGADAMVQWEMEVCKLPRLSLNGVRFRRIS  588 (596)
T ss_pred             hhhhhhccccccccccccc------cCCCCCcccccccccceeecCcccccceeecccc
Confidence            8999999999999999974      6888888899999999999999999999999998

>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []

Probab=97.71  E-value=6.6e-06  Score=73.17  Aligned_cols=46  Identities=24%  Similarity=0.582  Sum_probs=41.2

Q ss_pred             ccccccCcCCcccchhhHHHHHHHHhhcCccccCCCCccccCCCce
Q psy2660           2 DKVEGADFNEMEPFLSPMMHTVCLVWANCKYYQGPMAMEPVPKHNV   47 (149)
Q Consensus         2 ~~~E~~~f~~~~~~i~pl~h~v~LiW~~s~yY~~p~ri~vv~~~~~   47 (149)
                      +.|+..+|+++...|+|++|+++++|.+|+||+++.||+.+.....
T Consensus       110 ~~l~~~~~~~i~~~i~~l~~~l~~iw~~S~~y~~~~R~~~Ll~~is  155 (579)
T PF08385_consen  110 ELLEASDLSEIQESIPPLFHHLRLIWRISRYYYPPERMTSLLEKIS  155 (579)
T ss_pred             HhhccCCHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Confidence            5678889999999999999999999999999999999998854433

The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
3ose_A	120	Structure Of The Kinase Associated Domain 1 (Ka1) F		9e-38
1ul7_A	102	Solution Structure Of Kinase Associated Domain 1 Of		1e-33
1v5s_A	126	Solution Structure Of Kinase Associated Domain 1 Of		3e-26

>pdb|3OSE|A Chain A, Structure Of The Kinase Associated Domain 1 (Ka1) From Mark1 Kinase Length = 120

Iteration: 1
 Score =  152 bits (383), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 71/86 (82%), Positives = 76/86 (88%)
Query: 58  KPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQW 117
           KPRSLRFTWSMKTTSS DPN++  EIRKVLDANNCDYEQ+ERFLL CVHGD   DSLVQW
Sbjct: 21  KPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQW 80
Query: 118 EIEVCKLPRLSLNGVRFKRISDHIIS 143
           E+EVCKLPRLSLNGVRFKRIS   I+
Sbjct: 81  EMEVCKLPRLSLNGVRFKRISGTSIA 106

>pdb|1UL7|A Chain A, Solution Structure Of Kinase Associated Domain 1 Of Mouse MapMICROTUBULE AFFINITY-Regulating Kinase 3 Length = 102

Iteration: 1
 Score =  138 bits (347), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 72/83 (86%)
Query: 61  SLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIE 120
           S RFTWSMKTTSS DP+++  EIRKVL ANNCDYEQRERFLL CVHGD + ++LVQWE+E
Sbjct: 6   SGRFTWSMKTTSSMDPSDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEME 65
Query: 121 VCKLPRLSLNGVRFKRISDHIIS 143
           VCKLPRLSLNGVRFKRIS   I+
Sbjct: 66  VCKLPRLSLNGVRFKRISGTSIA 88

>pdb|1V5S|A Chain A, Solution Structure Of Kinase Associated Domain 1 Of Mouse MapMICROTUBULE AFFINITY-Regulating Kinase 3 Length = 126

Iteration: 1
 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 68/95 (71%), Gaps = 3/95 (3%)
Query: 49  SNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGD 108
           ++A N D   P +    +   + SS D   +  EIRKVL ANNCDYEQRERFLL CVHGD
Sbjct: 15  AHAHNKDYDIPTTENLYFQGSSGSSGD---MMREIRKVLGANNCDYEQRERFLLFCVHGD 71
Query: 109 PNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIIS 143
            + ++LVQWE+EVCKLPRLSLNGVRFKRIS   I+
Sbjct: 72  GHAENLVQWEMEVCKLPRLSLNGVRFKRISGTSIA 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
3ose_A	120	Serine/threonine-protein kinase MARK1; kinase asso	3e-38
1v5s_A	126	MAP/microtubule affinity-regulating kinase 3; Ka1	8e-35
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	7e-05

>3ose_A Serine/threonine-protein kinase MARK1; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.70A {Homo sapiens} PDB: 1ul7_A Length = 120

 Score =  125 bits (315), Expect = 3e-38
 Identities = 70/86 (81%), Positives = 74/86 (86%)

Query: 53  NDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTD 112
                KPRSLRFTWSMKTTSS DPN++  EIRKVLDANNCDYEQ+ERFLL CVHGD   D
Sbjct: 16  EGKDSKPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQD 75

Query: 113 SLVQWEIEVCKLPRLSLNGVRFKRIS 138
           SLVQWE+EVCKLPRLSLNGVRFKRIS
Sbjct: 76  SLVQWEMEVCKLPRLSLNGVRFKRIS 101

>1v5s_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, phosphorylation, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.129.6.1 Length = 126

 Score =  116 bits (292), Expect = 8e-35
 Identities = 54/86 (62%), Positives = 62/86 (72%), Gaps = 3/86 (3%)

Query: 53  NDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTD 112
           N D   P +    +     SS    ++  EIRKVL ANNCDYEQRERFLL CVHGD + +
Sbjct: 19  NKDYDIPTTENLYFQG---SSGSSGDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAE 75

Query: 113 SLVQWEIEVCKLPRLSLNGVRFKRIS 138
           +LVQWE+EVCKLPRLSLNGVRFKRIS
Sbjct: 76  NLVQWEMEVCKLPRLSLNGVRFKRIS 101

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 19/108 (17%), Positives = 48/108 (44%), Gaps = 4/108 (3%)

Query: 34  QGPMAMEPVPKHNVVSNAVNDDQVKPRSL-RFTWSMKTTSSRDPNEIRAEIRKVLDANNC 92
           + P  +   P+     + +N  + K + + +  W +   S   PN+I AE+ + +   + 
Sbjct: 365 RVPFLVAETPRARHTLDELNPQKSKHQGVRKAKWHLGIRSQSRPNDIMAEVCRAIKQLDY 424

Query: 93  DYEQRERFLLLCVHGDPNTDSLVQWEIEVCKL-PRLSLNGVRFKRISD 139
           +++    + L     +P T +  +  +++ ++  R  L  + F+ I D
Sbjct: 425 EWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDSRTYL--LDFRSIDD 470

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
3ose_A	120	Serine/threonine-protein kinase MARK1; kinase asso	100.0
1v5s_A	126	MAP/microtubule affinity-regulating kinase 3; Ka1	100.0
4eai_A	106	5'-AMP-activated protein kinase catalytic subunit	98.92
2v8q_A	157	5'-AMP-activated protein kinase catalytic subunit;	98.53
2y8l_A	173	5'-AMP-activated protein kinase catalytic subunit;	98.47
4eag_A	130	EG:132E8.2 protein; AMPK, transferase; HET: ATP TA	98.42
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	98.17
2qrd_A	137	SNF1-like protein kinase SSP2; AMPK, ADP, ATP-bind	97.82
3t4n_A	179	Carbon catabolite-derepressing protein kinase; CBS	97.44
2ehb_D	143	CBL-interacting serine/threonine-protein kinase 2;	96.59
2zfd_B	123	Putative uncharacterized protein T20L15_90; calciu	95.79
3ost_A	128	Serine/threonine-protein kinase KCC4; kinase assoc	86.65

>3ose_A Serine/threonine-protein kinase MARK1; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.70A {Homo sapiens} SCOP: d.129.6.1 PDB: 1ul7_A

Probab=100.00  E-value=8.8e-37  Score=226.50  Aligned_cols=96  Identities=74%  Similarity=1.177  Sum_probs=85.6

Q ss_pred             CCCCCCCCCCeeEeeeeeeecccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCC
Q psy2660          50 NAVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSL  129 (149)
Q Consensus        50 ~~~~~~~~kPR~lk~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l  129 (149)
                      +..++++++||++||+|||+|||+++|++||+||++||+++||+|+++|+|+|.|.|+++.+++.|+||||||+||++++
T Consensus        13 ~~~~~~~~kPR~lk~~~~v~tTS~~~P~eIm~eI~rvL~~~gi~~~~~g~y~l~C~~~~~~~~~~v~fElEVckl~~~~l   92 (120)
T 3ose_A           13 DKEEGKDSKPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQWEMEVCKLPRLSL   92 (120)
T ss_dssp             --------CCCBCCCCTTCCCEECSCHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCTTTTCCEEEEEEEEEEGGGTE
T ss_pred             cccccCCCCCcEEeceeeecCcccCCHHHHHHHHHHHHHHCCCEEEEcCCEEEEEEecCCCCCccEEEEEEEEEecCCCc
Confidence            34567889999999999999999999999999999999999999999989999999999888889999999999999999


Q ss_pred             ceeeEEEecCccceee
Q psy2660         130 NGVRFKRISDHIISKI  145 (149)
Q Consensus       130 ~GIrfKRisGd~w~~~  145 (149)
                      |||+||||+||+|.|-
T Consensus        93 ~gV~~kRi~Gd~~~yk  108 (120)
T 3ose_A           93 NGVRFKRISGTSIAFK  108 (120)
T ss_dssp             EEEEEEEEESCHHHHH
T ss_pred             eeEEEEecCCCHHHHH
Confidence            9999999999999983

>1v5s_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, phosphorylation, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.129.6.1

Probab=100.00  E-value=5.1e-34  Score=213.84  Aligned_cols=92  Identities=61%  Similarity=0.958  Sum_probs=87.3

Q ss_pred             CCCCCCCCCeeEeeeeeeecccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCc
Q psy2660          51 AVNDDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLN  130 (149)
Q Consensus        51 ~~~~~~~kPR~lk~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~  130 (149)
                      +-+.+.++||++|+.|   |||+++|++||.||+|||+++||+|+++|+|.|.|.|+++.+++.|+|||||||||+++++
T Consensus        17 ~~~~~~~~pr~lk~~f---tTSsk~P~eIm~EI~rvL~~~~i~~k~~~~y~L~C~~~~~~~~~~vkfEiEVcKvp~l~l~   93 (126)
T 1v5s_A           17 AHNKDYDIPTTENLYF---QGSSGSSGDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEMEVCKLPRLSLN   93 (126)
T ss_dssp             CCCCCCCCCSSSEECC---CCCCSSHHHHHHHHHHHHHHTTEEEEEEETTEEEEEECSSSTTTCEEEEEECCCCTTTCSC
T ss_pred             ccCCCcccCcEEeEEE---eecCCCHHHHHHHHHHHHHHcCCcEEEECCEEEEEEECCCCCCceEEEEEEEEEecCCCce
Confidence            3467889999999999   9999999999999999999999999999999999999998888899999999999999999


Q ss_pred             eeeEEEecCccceee
Q psy2660         131 GVRFKRISDHIISKI  145 (149)
Q Consensus       131 GIrfKRisGd~w~~~  145 (149)
                      ||+||||+||+|.|-
T Consensus        94 GI~fKRisGd~w~YK  108 (126)
T 1v5s_A           94 GVRFKRISGTSIAFK  108 (126)
T ss_dssp             CCEEEEEESCHHHHH
T ss_pred             eEEEeeccCchhHHH
Confidence            999999999999983

>4eai_A 5'-AMP-activated protein kinase catalytic subunit linker, 5'-AMP-activated protein...; AMPK, transferase; HET: AMP; 2.29A {Rattus norvegicus} PDB: 4eaj_A* 4eak_A* 4eal_A*

Probab=98.92  E-value=4.6e-09  Score=76.25  Aligned_cols=76  Identities=17%  Similarity=0.377  Sum_probs=66.7

Q ss_pred             eeeeeecccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCceeeEEEecCc
Q psy2660          64 FTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDH  140 (149)
Q Consensus        64 ~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~GIrfKRisGd  140 (149)
                      ..|.....|..+|.|+|.||.++|.+.|+.|+..++|.+.|.+..+.....+.||+++.|+..-. +=+.|||++|+
T Consensus         6 ~kW~LGIrS~~~P~eiM~eIyraLk~lg~~Wk~~~~Y~lkcR~~~~~~~~~vK~~lQLYkv~~~~-YLLDfq~i~g~   81 (106)
T 4eai_A            6 AKWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDSRT-YLLDFRSIDDG   81 (106)
T ss_dssp             CEEEESEEECSCHHHHHHHHHHHHHHHTCEEEEEETTEEEEEEECTTTCCEEEEEEEEEECSSSC-EEEEEEECCSS
T ss_pred             ccceEcceeCCCHHHHHHHHHHHHHHcCCEEeeCCceEEEEEEcCCCCCceeEEEEEEEEecCCc-EEEEEEeccCC
Confidence            46778889999999999999999999999999999999999987765567899999999996433 44899999995

>2v8q_A 5'-AMP-activated protein kinase catalytic subunit; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.129.6.2 PDB: 2v92_A* 2v9j_A* 2y94_C*

Probab=98.53  E-value=4.8e-07  Score=69.62  Aligned_cols=79  Identities=18%  Similarity=0.392  Sum_probs=65.0

Q ss_pred             eeeeecccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCceeeEEEecCcccee
Q psy2660          65 TWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIISK  144 (149)
Q Consensus        65 ~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~GIrfKRisGd~w~~  144 (149)
                      -|-....|..+|.|||.||.|+|...|+.|+..+.|.+.|....+.....|+|||.+.|+.. +.+=+.|||+.|+.|..
T Consensus         4 kWhLGIrSrs~P~eIM~EVyRALk~Lg~eWK~~~pY~IkcRw~~~~~~~~vKm~LQLYkv~~-~~YLLDFk~l~g~~~e~   82 (157)
T 2v8q_A            4 AWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDS-RTYLLDFRSIDDEITEA   82 (157)
T ss_dssp             EEEESEEECSCHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEECTTTCCEEEEEEEEEECSS-SCEEEEEEEECCC----
T ss_pred             cceeecccCCCHHHHHHHHHHHHHHcCCEEeeCCCeEEEEEEcCCCCCceEEEEEEEEEecC-CCEEEEEEecCCCcccc
Confidence            45667778889999999999999999999999889999998766555568999999999974 34669999999998863

>2y8l_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, serine/threonine-protein KI; HET: ADP AMP; 2.50A {Rattus norvegicus} PDB: 2y8q_A* 2ya3_A*

Probab=98.47  E-value=8.2e-07  Score=69.24  Aligned_cols=80  Identities=18%  Similarity=0.394  Sum_probs=65.3

Q ss_pred             eeeeeecccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCceeeEEEecCccce
Q psy2660          64 FTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIIS  143 (149)
Q Consensus        64 ~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~GIrfKRisGd~w~  143 (149)
                      .-|-....|..+|.|||.||.|+|.+.|+.|+..++|.+.|....+-....|+|||-+.|+.. +.+=+.|||+.|+.|.
T Consensus        17 ~kWhLGIrSrs~P~eIM~EVyRALk~Lg~eWK~i~pY~IkcRw~~~~~~~~vKmeLQLYKv~~-~~YLLDFk~l~Gd~~e   95 (173)
T 2y8l_A           17 MAWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDS-RTYLLDFRSIDDEITE   95 (173)
T ss_dssp             CEEEESEEECSCHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEECTTTCCEEEEEEEEEECSS-SCEEEEEEEECCC---
T ss_pred             ceeeeecccCCCHHHHHHHHHHHHHHcCCEEeeCCCeEEEEEEcCCCCCeeEEEEEEEEEEcC-CCEEEEEEecCCCccc
Confidence            345566778789999999999999999999999999999998866545568999999999974 3466999999999886


Q ss_pred             e
Q psy2660         144 K  144 (149)
Q Consensus       144 ~  144 (149)
                      -
T Consensus        96 ~   96 (173)
T 2y8l_A           96 A   96 (173)
T ss_dssp             -
T ss_pred             c
Confidence            3

>4eag_A EG:132E8.2 protein; AMPK, transferase; HET: ATP TAM; 2.70A {Drosophila melanogaster}

Probab=98.42  E-value=1.4e-06  Score=65.23  Aligned_cols=77  Identities=13%  Similarity=0.281  Sum_probs=64.3

Q ss_pred             eeeeeecccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCceeeEEEecCcc
Q psy2660          64 FTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHI  141 (149)
Q Consensus        64 ~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~GIrfKRisGd~  141 (149)
                      .-|.....|..+|.|||.||.|+|...|+.|+..++|.+.|....+.....+++++...++..- -+=+.||++.||.
T Consensus         6 ~kW~LGIrS~~~P~eIM~EVyrALk~Lg~eWK~~~pY~vkcR~~n~~~~~~vKm~LQLYqv~~~-~YLLDfk~~~~~~   82 (130)
T 4eag_A            6 AKWHLGIRSQSKPNDIMLEVYRAMKALSYEWKIINPYHVRVRRQNVKTGKFSKMSLQLYQVDAK-SYLLDFKSLTNDE   82 (130)
T ss_dssp             CCEEESBCCCSCHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEECTTTCCEEEEEEEEEESSSS-CEEEEEEECC---
T ss_pred             cceeeeeecCCCHHHHHHHHHHHHHHCCCEEeeCCCEEEEEEecCCCCCceeEEEEEEEEecCC-cEEEEeccCCcch
Confidence            3466778888899999999999999999999999999999987666666789999999998754 3668999999985

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=98.17  E-value=5.5e-06  Score=71.83  Aligned_cols=81  Identities=17%  Similarity=0.394  Sum_probs=65.9

Q ss_pred             eeeeeeecccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCceeeEEEecCccc
Q psy2660          63 RFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHII  142 (149)
Q Consensus        63 k~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~GIrfKRisGd~w  142 (149)
                      +-.|-....|...|++||.||.|+|...|++|...+.|.+.|.+..+.....++|++-+.++..-. +=+-|||++|+..
T Consensus       395 ~~~w~lgi~s~~~p~~im~ev~~al~~lg~~Wk~~~~~~i~~r~~~~~~~~~~k~~lqly~~~~~~-~llDf~~~~~~~~  473 (476)
T 2y94_A          395 KAKWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDSRT-YLLDFRSIDDEIL  473 (476)
T ss_dssp             CCCEEESEEECSCHHHHHHHHHHHHHTTTCBCCEEETTEEEEEEECTTTCCEEEEEEEEEECSSSC-EEEEEEEECCC--
T ss_pred             cceeeecCccCCCHHHHHHHHHHHHHHcCCeeccCCCEEEEEEECCCCCCceEEEEEEEEEecCCc-EEEEeeecCCCcc
Confidence            445666777888899999999999999999999988999999987766667899999999996433 4489999999987


Q ss_pred             ee
Q psy2660         143 SK  144 (149)
Q Consensus       143 ~~  144 (149)
                      .|
T Consensus       474 ~~  475 (476)
T 2y94_A          474 EV  475 (476)
T ss_dssp             --
T ss_pred             cc
Confidence            66

>2qrd_A SNF1-like protein kinase SSP2; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.129.6.2 PDB: 2ooy_A* 2qr1_A* 2qrc_A* 2oox_A* 2qre_A*

Probab=97.82  E-value=1.4e-05  Score=60.18  Aligned_cols=78  Identities=10%  Similarity=0.155  Sum_probs=62.0

Q ss_pred             eeEeeeeeeecccCCChHHHHHHHHHHhhhCCCceeee---------CCEEEEEEeCCCCC-----CcceEEEEEEEeeC
Q psy2660          60 RSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQR---------ERFLLLCVHGDPNT-----DSLVQWEIEVCKLP  125 (149)
Q Consensus        60 R~lk~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~---------~~y~l~C~~~d~~~-----~~~v~fEmEVCkLp  125 (149)
                      +..|..  ....|...|-|||.||-|+|.+.|+.|+..         |.|.+.|....+..     ...|.|+|.+.++.
T Consensus         9 ~~~kWh--lGIRSrs~P~eIM~EVyrALk~Lg~eWk~~~~~~~~~~~~~y~Ik~R~~~~~~~~~~~~~~vkm~iQLYqv~   86 (137)
T 2qrd_A            9 RRNKWH--FGVRCRGDAPEILLAVYRALQRAGAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKREGKNTYAYIELQLYEVM   86 (137)
T ss_dssp             --CCCE--ESEEEESCHHHHHHHHHHHHHHHTCEECCCCCBTTBCCGGGGEEEEEEECHHHHHTTCCEEEEEEEEEEEEE
T ss_pred             ccCccc--cccccCCCHHHHHHHHHHHHHHCCCEEEeccccccccCCCceEEEEEEecCCCccccCCceEEEEEEEEEec
Confidence            444444  455676799999999999999999999987         89999998754321     35799999999997


Q ss_pred             CCCCceeeEEEecCc
Q psy2660         126 RLSLNGVRFKRISDH  140 (149)
Q Consensus       126 ~l~l~GIrfKRisGd  140 (149)
                      . +.+=+.||++.|+
T Consensus        87 ~-~~YLlDFk~~~~~  100 (137)
T 2qrd_A           87 P-GCFMLDVKSNGYK  100 (137)
T ss_dssp             T-TEEEEEEEEEEEE
T ss_pred             C-CcEEEEEEecCCc
Confidence            3 4466999999998

>3t4n_A Carbon catabolite-derepressing protein kinase; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} SCOP: d.129.6.2 PDB: 3tdh_A* 3te5_A* 2qlv_A

Probab=97.44  E-value=0.00041  Score=54.30  Aligned_cols=74  Identities=15%  Similarity=0.177  Sum_probs=58.0

Q ss_pred             eeeeeecccCCChHHHHHHHHHHhhhCCCceeeeC---CEEEEEEeCCCC---------CCcceEEEEEEEeeCCCCCce
Q psy2660          64 FTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRE---RFLLLCVHGDPN---------TDSLVQWEIEVCKLPRLSLNG  131 (149)
Q Consensus        64 ~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~---~y~l~C~~~d~~---------~~~~v~fEmEVCkLp~l~l~G  131 (149)
                      .-|.....|..+|.|||.||.|+|...|+.|+..+   .|.+.|.+....         ....|+||+.+.++..- .+=
T Consensus        49 ~kW~LGIrS~~~P~eIM~EVyrALk~Lg~~WKk~~~~~pY~IkcRw~~~~~~~~~~~~~~p~~vKmeLQLYkv~~~-~YL  127 (179)
T 3t4n_A           49 TRWHFGIRSRSYPLDVMGEIYIALKNLGAEWAKPSEEDLWTIKLRWKYDIGNKTNTNEKIPDLMKMVIQLFQIETN-NYL  127 (179)
T ss_dssp             CCCEESEEECSCHHHHHHHHHHHHHHHTCEEECCCGGGTTEEEEEECC-----------CCCEEEEEEEEEEEETT-EEE
T ss_pred             ceeeeccccCCCHHHHHHHHHHHHHHcCCEEeeCCCCCceEEEEEEeCCCCcccccccCCCceeEEEEEEEEecCC-ceE
Confidence            34556777889999999999999999999999987   999999865321         12469999999999753 344


Q ss_pred             eeEEEecC
Q psy2660         132 VRFKRISD  139 (149)
Q Consensus       132 IrfKRisG  139 (149)
                      +.|| ..|
T Consensus       128 LDfk-~~G  134 (179)
T 3t4n_A          128 VDFK-FDG  134 (179)
T ss_dssp             EEEE-EEE
T ss_pred             EEEE-ecc
Confidence            6677 666

>2ehb_D CBL-interacting serine/threonine-protein kinase 2; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana}

Probab=96.59  E-value=0.0054  Score=46.02  Aligned_cols=73  Identities=21%  Similarity=0.195  Sum_probs=58.1

Q ss_pred             cccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCceeeEEEecCcccee
Q psy2660          70 TTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIISK  144 (149)
Q Consensus        70 TTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~GIrfKRisGd~w~~  144 (149)
                      -||..+|++|+..|..+....|...+.++ +.+...-...+.+..+.+.+||..+- .+++=|-+|+-+||+..|
T Consensus        38 F~s~~~a~~ii~klEe~a~~lg~~V~kk~-~~vkl~~~~~grkG~l~v~~EVfeva-psl~vVEvrks~GD~lEy  110 (143)
T 2ehb_D           38 FVSRREPSEIIANIEAVANSMGFKSHTRN-FKTRLEGLSSIKAGQLAVVIEIYEVA-PSLFMVDVRKAAGETLEY  110 (143)
T ss_dssp             EEECSCHHHHHHHHHHHHHHTTEEEEESS-SEEEEEECCSSGGGCCEEEEEEEEEE-TTEEEEEEEEEESCHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHhcCcEEEEcC-cEEEEEEecCCCcceEEEEEEEEEec-CCEEEEEEEecCCChHHH
Confidence            45889999999999999999999888764 56655433333456799999999996 467779999999998654

>2zfd_B Putative uncharacterized protein T20L15_90; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana}

Probab=95.79  E-value=0.03  Score=40.82  Aligned_cols=70  Identities=11%  Similarity=0.107  Sum_probs=53.2

Q ss_pred             cccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCceeeEEEecCcccee
Q psy2660          70 TTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHIISK  144 (149)
Q Consensus        70 TTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~GIrfKRisGd~w~~  144 (149)
                      -||..+|++|+..|..+....|...+.+++ . .+....  .+..+.+.+||..+. .+++=|-+|+-+||+..|
T Consensus        36 F~S~~~a~~ii~klEe~a~~lg~~v~kk~~-~-~~~~~g--~kG~l~v~~EVfev~-p~l~vVEvrks~GD~lEy  105 (123)
T 2zfd_B           36 FVSAWTAERVVERLEEIVSAENLTVAKKET-W-GMKIEG--QKGNFAMVVEINQLT-DELVMIEVRKRQRAAASG  105 (123)
T ss_dssp             EEESSCHHHHHHHHHHHHHHTTCEEEEEET-T-EEEEEE--GGGTEEEEEEEEECS-SSCEEEEEEEEESCC---
T ss_pred             EEeCCCHHHHHHHHHHHHHHCCCEEEEcCC-c-cccccC--CCccEEEEEEEEEec-CCEEEEEEEecCCChHHH
Confidence            458899999999999999999988887643 2 443222  245689999999996 566679999999998765

>3ost_A Serine/threonine-protein kinase KCC4; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.69A {Saccharomyces cerevisiae} PDB: 3osm_A

Probab=86.65  E-value=1.9  Score=31.85  Aligned_cols=75  Identities=9%  Similarity=0.113  Sum_probs=53.5

Q ss_pred             eeeeecccCCChHHHHHHHHHHhhh---CCC---ceeeeCCEEEEEEeCCCC--CCcceEEEEEEEeeCCCCC-ceeeEE
Q psy2660          65 TWSMKTTSSRDPNEIRAEIRKVLDA---NNC---DYEQRERFLLLCVHGDPN--TDSLVQWEIEVCKLPRLSL-NGVRFK  135 (149)
Q Consensus        65 ~fsvsTTSsk~P~ei~~EI~rvL~~---~~i---~y~~~~~y~l~C~~~d~~--~~~~v~fEmEVCkLp~l~l-~GIrfK  135 (149)
                      .|.+..-+..+-.++.+||.+.|..   -|+   .+.. .++.+...-+..+  .=..+.|+|||.  |+-++ .=|+|+
T Consensus        24 ~~d~~l~t~v~k~~~~~~L~~LL~~Wk~yGlkdv~~D~-~~~~ItGrvs~~N~L~LRsv~F~i~i~--~~gn~~Slv~f~  100 (128)
T 3ost_A           24 ILELEIHAKIPEKRLYEGLHKLLEGWKQYGLKNLVFNI-TNMIITGKLVNDSILFLRSTLFEIMVL--PNGDGRSLIKFN  100 (128)
T ss_dssp             ECSCCEEESSCHHHHHHHHHHHHHTCGGGTEEEEEEET-TTTEEEEEECCCCSSSCCCEEEEEEEE--ECSTTCEEEEEE
T ss_pred             CccEEEEEecCHHHHHHHHHHHHHHHHHhCccceEecC-CCCEEEEEEccccccccceeEEEEEEe--ecCCceEEEEEE
Confidence            3667777889999999999999985   343   3443 3676666554322  124699999999  66544 449999


Q ss_pred             EecCccc
Q psy2660         136 RISDHII  142 (149)
Q Consensus       136 RisGd~w  142 (149)
                      +.+|.+=
T Consensus       101 q~rGSss  107 (128)
T 3ost_A          101 KKTGSTK  107 (128)
T ss_dssp             ESSSCHH
T ss_pred             EeeccHH
Confidence            9999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d1ul7a_	102	d.129.6.1 (A:) Map/microtubule affinity-regulating	3e-40

>d1ul7a_ d.129.6.1 (A:) Map/microtubule affinity-regulating kinase 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: KA1-like
family: Kinase associated domain 1, KA1
domain: Map/microtubule affinity-regulating kinase 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  128 bits (323), Expect = 3e-40
 Identities = 63/81 (77%), Positives = 70/81 (86%)

Query: 58  KPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQW 117
              S RFTWSMKTTSS DP+++  EIRKVL ANNCDYEQRERFLL CVHGD + ++LVQW
Sbjct: 3   SGSSGRFTWSMKTTSSMDPSDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQW 62

Query: 118 EIEVCKLPRLSLNGVRFKRIS 138
           E+EVCKLPRLSLNGVRFKRIS
Sbjct: 63  EMEVCKLPRLSLNGVRFKRIS 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d1ul7a_	102	Map/microtubule affinity-regulating kinase 3 {Mous	100.0
d2v8qa1	153	5'-AMP-activated protein kinase catalytic subunit	98.34
d2qlva1	171	Carbon catabolite-derepressing protein kinase SNF1	96.41
d2qrda1	127	Snf1-like protein kinase ssp2 {Schizosaccharomyces	95.88
d1vgya2	113	Succinyl-diaminopimelate desuccinylase {Neisseria	84.76

>d1ul7a_ d.129.6.1 (A:) Map/microtubule affinity-regulating kinase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: KA1-like
family: Kinase associated domain 1, KA1
domain: Map/microtubule affinity-regulating kinase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-36  Score=217.74  Aligned_cols=88  Identities=73%  Similarity=1.151  Sum_probs=86.2

Q ss_pred             CCCeeEeeeeeeecccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCceeeEEE
Q psy2660          57 VKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKR  136 (149)
Q Consensus        57 ~kPR~lk~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~GIrfKR  136 (149)
                      ++||++||+|||+|||+++|++||+||++||+++||+|+++|+|.+.|.|++++++..|+||||||++|+++++||+|||
T Consensus         2 ~~~~~~rf~wsv~tTS~~~P~eIm~eI~rvL~~lgv~~~~~g~y~l~c~~~~~~~~~~v~fEieV~kv~~~~l~gv~~kR   81 (102)
T d1ul7a_           2 SSGSSGRFTWSMKTTSSMDPSDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEMEVCKLPRLSLNGVRFKR   81 (102)
T ss_dssp             CCCCCCCCCCCCCCCBCSCHHHHHHHHHHHHHHTTCEEEECSTTCEEEEECSSCGGGCEEEEEEEEECSSSSSEEEEEEE
T ss_pred             CCCCCcceeeeeecCcCCCHHHHHHHHHHHHHHcCcEEEEcCCEEEEEEecCCCCCceEEEEEEEEEcCCCceEEEEEEE
Confidence            68999999999999999999999999999999999999999899999999999999999999999999999999999999


Q ss_pred             ecCcccee
Q psy2660         137 ISDHIISK  144 (149)
Q Consensus       137 isGd~w~~  144 (149)
                      ++||+|.|
T Consensus        82 ~~Gd~~~y   89 (102)
T d1ul7a_          82 ISGTSIAF   89 (102)
T ss_dssp             EESCHHHH
T ss_pred             ccCCHHHH
Confidence            99999987

>d2v8qa1 d.129.6.2 (A:396-548) 5'-AMP-activated protein kinase catalytic subunit alpha-1, AMPK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: KA1-like
family: Ssp2 C-terminal domain-like
domain: 5'-AMP-activated protein kinase catalytic subunit alpha-1, AMPK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.34  E-value=1.2e-06  Score=65.22  Aligned_cols=75  Identities=19%  Similarity=0.418  Sum_probs=65.3

Q ss_pred             eeeecccCCChHHHHHHHHHHhhhCCCceeeeCCEEEEEEeCCCCCCcceEEEEEEEeeCCCCCceeeEEEecCcc
Q psy2660          66 WSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISDHI  141 (149)
Q Consensus        66 fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l~C~~~d~~~~~~v~fEmEVCkLp~l~l~GIrfKRisGd~  141 (149)
                      |-....|.-.|.|||.||-|+|.+.|++|+..+.|.+.|.+..+..+..|+|+|-..++..-. +=+.||+|.|+.
T Consensus         1 WhlGIrS~s~P~dIM~eVyrALk~L~~eWk~~~~y~ir~R~~~~~~~~~~Km~lQLYqv~~~~-YLLDfk~i~~~~   75 (153)
T d2v8qa1           1 WHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDSRT-YLLDFRSIDDEI   75 (153)
T ss_dssp             EEESEEECSCHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEECTTTCCEEEEEEEEEECSSSC-EEEEEEEECCC-
T ss_pred             CccccccCCCHHHHHHHHHHHHHHcCCeEEecCceEEEEEEECCCCCceeEEEEEEEEEcCCc-eEEEeeecCcch
Confidence            455677888999999999999999999999988999999998877788999999999997443 669999998874

>d2qlva1 d.129.6.2 (A:460-630) Carbon catabolite-derepressing protein kinase SNF1 {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: KA1-like
family: Ssp2 C-terminal domain-like
domain: Carbon catabolite-derepressing protein kinase SNF1
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=96.41  E-value=0.0027  Score=47.44  Aligned_cols=72  Identities=15%  Similarity=0.234  Sum_probs=51.7

Q ss_pred             eeeeeeecccCCChHHHHHHHHHHhhhCCCceeee---CCEEEEEEeCC---------CCCCcceEEEEEEEeeCCCCCc
Q psy2660          63 RFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQR---ERFLLLCVHGD---------PNTDSLVQWEIEVCKLPRLSLN  130 (149)
Q Consensus        63 k~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~---~~y~l~C~~~d---------~~~~~~v~fEmEVCkLp~l~l~  130 (149)
                      |.-|-....|...|-|+|.||-|+|.+.|+.|+..   |.|.+.|.+..         ....+.|.++|...++..-+ +
T Consensus        43 ~~kWhfGIRSrs~P~eiM~evykALk~Lg~eWk~~~~~~~~~ir~Rwk~~~~~~~~~~~~~~~~vk~~iQLYqv~~~~-Y  121 (171)
T d2qlva1          43 KTRWHFGIRSRSYPLDVMGEIYIALKNLGAEWAKPSEEDLWTIKLRWKYDIGNKTNTNEKIPDLMKMVIQLFQIETNN-Y  121 (171)
T ss_dssp             -CCCEESEEECSCHHHHHHHHHHHHHHHTCEECCCC---CCEEEEEEC--------------CEEEEEEEEEC---CC-E
T ss_pred             cceeeeecccCCCHHHHHHHHHHHHHHcCCEEeecCCCCceEEEEEeecCCCcccccCCCCCceEEEEEEEEEEcCCc-e
Confidence            45677788899999999999999999999999874   46999998652         12235799999999986433 3


Q ss_pred             eeeEE
Q psy2660         131 GVRFK  135 (149)
Q Consensus       131 GIrfK  135 (149)
                      =+.||
T Consensus       122 LlDFK  126 (171)
T d2qlva1         122 LVDFK  126 (171)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            35665

>d2qrda1 d.129.6.2 (A:450-576) Snf1-like protein kinase ssp2 {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: KA1-like
family: Ssp2 C-terminal domain-like
domain: Snf1-like protein kinase ssp2
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.88  E-value=0.0039  Score=44.50  Aligned_cols=69  Identities=12%  Similarity=0.209  Sum_probs=53.5

Q ss_pred             eeeecccCCChHHHHHHHHHHhhhCCCceeeeCC---------EEEEEEeCCC-----CCCcceEEEEEEEeeCCCCCce
Q psy2660          66 WSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRER---------FLLLCVHGDP-----NTDSLVQWEIEVCKLPRLSLNG  131 (149)
Q Consensus        66 fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~---------y~l~C~~~d~-----~~~~~v~fEmEVCkLp~l~l~G  131 (149)
                      |-....|.-.|-|||.||-|+|.+.|..++..++         |.++|.+..+     ...+.|.++|..-++..-+ +=
T Consensus         3 WhfGIRSrs~P~eiM~eVYrALk~Lg~eWk~~~~~~~~~~~d~y~Ir~R~~~~~~~~~~~~~~vkm~iQLYqve~~~-YL   81 (127)
T d2qrda1           3 WHFGVRCRGDAPEILLAVYRALQRAGAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKREGKNTYAYIELQLYEVMPGC-FM   81 (127)
T ss_dssp             CEESEEEESCHHHHHHHHHHHHHHHTCEECCCCCBTTBCCGGGGEEEEEEECHHHHHTTCCEEEEEEEEEEEEETTE-EE
T ss_pred             ceeccccCCChHHHHHHHHHHHHHcCCEEeecCcccccccCCceEEEEEeecCCccccCCCceEEEEEEEEEEcCCc-EE
Confidence            4456678889999999999999999999987655         9999986532     2345789999999987432 44


Q ss_pred             eeEE
Q psy2660         132 VRFK  135 (149)
Q Consensus       132 IrfK  135 (149)
                      |-||
T Consensus        82 lDFK   85 (127)
T d2qrda1          82 LDVK   85 (127)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            6666

>d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Bacterial exopeptidase dimerisation domain
family: Bacterial exopeptidase dimerisation domain
domain: Succinyl-diaminopimelate desuccinylase
species: Neisseria meningitidis [TaxId: 487]

Probab=84.76  E-value=1.6  Score=28.53  Aligned_cols=47  Identities=13%  Similarity=0.386  Sum_probs=40.7

Q ss_pred             CCCCCCeeEeeeeeeecccCCChHHHHHHHHHHhhhCCCceeeeCCEEE
Q psy2660          54 DDQVKPRSLRFTWSMKTTSSRDPNEIRAEIRKVLDANNCDYEQRERFLL  102 (149)
Q Consensus        54 ~~~~kPR~lk~~fsvsTTSsk~P~ei~~EI~rvL~~~~i~y~~~~~y~l  102 (149)
                      ....-|-.....+++.+.+....+++.++|.+++++.+++|+-.  |.+
T Consensus        64 ~~NvIP~~a~~~~~iR~~~~~~~~~i~~~i~~i~~~~~~~~~i~--~~~  110 (113)
T d1vgya2          64 ATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDKHGVQYDLQ--WSC  110 (113)
T ss_dssp             CTTEECSEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE--EEE
T ss_pred             ccccCCCceEEEEEEEeCCHHHHHHHHHHHHHHHHHcCCeEEEE--EEE
Confidence            34567888899999999999999999999999999999999875  654