Psyllid ID: psy2686

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPKYKGEL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccEEEcccccccEEEEccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccEEEEEccccccEEEEEccccEcccccccEEccccccEEcccccccc
Coil and Loop (DISEMBL)
MGLQMETYRKEqlksnessQVRICELAAYfthsklqpvHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKLLAICnanptdehtidydehnpfqicarsytpiyhgreseacvycgasylpkykgel
Flexible Loop (DISEMBL)
mglqmetyrkeqlksnessQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPKYKGEL
Low Complexity Region (SEG)
MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPKYKGEL
Disordered region (IsUnstruct)
********************VRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPK*****
Disordered Region (DISOPRED)
MGLQ*******************CELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHR***************************EHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPKYKG**
Disordered Region (DISEMBL)
******************SQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPKYKGEL
Disordered Region (DISPRO)
*GLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPKYKGEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
P53621	1224	Coatomer subunit alpha OS	yes	N/A	1.0	0.113	0.611	4e-47
Q8CIE6	1224	Coatomer subunit alpha OS	yes	N/A	1.0	0.113	0.611	4e-46
Q27954	1224	Coatomer subunit alpha OS	yes	N/A	1.0	0.113	0.611	4e-46
Q55FR9	1221	Coatomer subunit alpha OS	yes	N/A	1.0	0.113	0.454	2e-30
Q94A40	1216	Coatomer subunit alpha-1	yes	N/A	0.971	0.111	0.417	5e-26
Q9SJT9	1218	Coatomer subunit alpha-2	no	N/A	0.971	0.110	0.421	5e-25
Q9AUR8	1218	Coatomer subunit alpha-1	yes	N/A	0.964	0.110	0.417	2e-24
Q9AUR7	1218	Coatomer subunit alpha-2	yes	N/A	0.964	0.110	0.417	2e-24
Q0J3D9	1218	Coatomer subunit alpha-3	yes	N/A	0.964	0.110	0.417	3e-24
Q96WV5	1207	Putative coatomer subunit	yes	N/A	0.928	0.106	0.372	1e-20

>sp|P53621|COPA_HUMAN Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2

 Score =  186 bits (471), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 85/139 (61%), Positives = 101/139 (72%)

Query: 1    MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
            +GL +ET RK+  K     Q RICE+AAYFTHS LQPVH IL LRTA NLFFKLKN+KT 
Sbjct: 1062 VGLSVETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTA 1121

Query: 61   ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
            A+FA RLLELGP  EVA Q RK+L+ C  NPTD + ++YD HNPF ICA SY PIY G+ 
Sbjct: 1122 ATFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKP 1181

Query: 121  SEACVYCGASYLPKYKGEL 139
             E C   GA Y P++KG++
Sbjct: 1182 VEKCPLSGACYSPEFKGQI 1200

Xenin stimulates exocrine pancreatic secretion. It inhibits pentagastrin-stimulated secretion of acid, to induce exocrine pancreatic secretion and to affect small and large intestinal motility. In the gut, xenin interacts with the neurotensin receptor.
Homo sapiens (taxid: 9606)

>sp|Q8CIE6|COPA_MOUSE Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=2

 Score =  182 bits (463), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 85/139 (61%), Positives = 99/139 (71%)

Query: 1    MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
            +GL ME  RK+  K     Q RICE+AAYFTHS LQPVH IL LRTA NLFFKLKN+KT 
Sbjct: 1062 VGLCMEIERKKLPKETLDQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTA 1121

Query: 61   ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
            A+FA RLLELGP  EVA Q RK+L+ C  NPTD   ++YD HNPF ICA SY PIY G+ 
Sbjct: 1122 ATFARRLLELGPKPEVAQQTRKILSACEKNPTDACQLNYDMHNPFDICAASYRPIYRGKP 1181

Query: 121  SEACVYCGASYLPKYKGEL 139
             E C   GA Y P++KG++
Sbjct: 1182 VEKCPLSGACYSPEFKGQI 1200

Xenin stimulates exocrine pancreatic secretion. It inhibits pentagastrin-stimulated secretion of acid, to induce exocrine pancreatic secretion and to affect small and large intestinal motility. In the gut, xenin interacts with the neurotensin receptor.

Mus musculus (taxid: 10090)

>sp|Q27954|COPA_BOVIN Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1

 Score =  182 bits (463), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 85/139 (61%), Positives = 101/139 (72%)

Query: 1    MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
            +GL MET RK+  K     Q RICE+AAYFTHS LQPVH IL LRTA NLFFKLKN++T 
Sbjct: 1062 VGLSMETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTA 1121

Query: 61   ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
            A+FA RLLELGP  EVA Q RK+L+ C  NPTD + ++YD HNPF ICA SY PIY G+ 
Sbjct: 1122 AAFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKP 1181

Query: 121  SEACVYCGASYLPKYKGEL 139
             E C   GA Y P++KG++
Sbjct: 1182 VEKCPLSGACYSPEFKGQI 1200

Xenin stimulates exocrine pancreatic secretion. It inhibits pentagastrin-stimulated secretion of acid, to induce exocrine pancreatic secretion and to affect small and large intestinal motility. In the gut, xenin interacts with the neurotensin receptor.

Bos taurus (taxid: 9913)

>sp|Q55FR9|COPA_DICDI Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/143 (45%), Positives = 89/143 (62%), Gaps = 4/143 (2%)

Query: 1    MGLQMETYRKEQL--KSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYK 58
            +G+++E  RKE       +S+  R  ELAAYFTH  L P H IL+LR+A N  +K+K++ 
Sbjct: 1056 LGIKIELQRKELSIGAQKDSTLGRQAELAAYFTHCNLDPSHLILSLRSAMNCAYKVKHFN 1115

Query: 59   TTASFAHRLLELGPSMEVATQARKLLAICNANPT--DEHTIDYDEHNPFQICARSYTPIY 116
              ASFA RL+ L P+ ++ATQA+K+       PT  D   ++YDE NPF ICA SY PIY
Sbjct: 1116 LAASFARRLISLNPNPDLATQAKKVFNFAQQTPTPSDIQQLNYDERNPFVICAHSYVPIY 1175

Query: 117  HGRESEACVYCGASYLPKYKGEL 139
             G     C YC + YLP +KG++
Sbjct: 1176 KGSPLIKCPYCSSCYLPTHKGKV 1198

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q94A40|COPA1_ARATH Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2

 Score =  115 bits (289), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 58/139 (41%), Positives = 80/139 (57%), Gaps = 4/139 (2%)

Query: 1    MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
            +GLQME  R+E     +   VR  ELAAYFTH  LQ  H  L L +A  + +K KN  T 
Sbjct: 1058 LGLQMELKRREM----KDDPVRQQELAAYFTHCNLQTPHLRLALLSAMGVCYKAKNLATA 1113

Query: 61   ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
            ++FA RLLE  P    A  AR+++     N TDE  ++YD  NPF +C  +Y PIY G++
Sbjct: 1114 SNFARRLLETSPVDSQAKMARQVVQAAERNMTDETKLNYDFRNPFVVCGSTYVPIYRGQK 1173

Query: 121  SEACVYCGASYLPKYKGEL 139
              +C YC A ++P  +G +
Sbjct: 1174 DVSCPYCTARFVPNQEGNI 1192

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJT9|COPA2_ARATH Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 59/140 (42%), Positives = 81/140 (57%), Gaps = 5/140 (3%)

Query: 1    MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
            +GLQ+E  R+E     +   VR  ELAAYFTH KLQ  H  L   +A  + +K KN  T 
Sbjct: 1059 LGLQLELKRREM----KDDPVRQQELAAYFTHCKLQTPHLRLAYFSAMTVCYKSKNMATA 1114

Query: 61   ASFAHRLLELGPSMEV-ATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGR 119
            A FA  LL+  P++E  A  AR+++     N TD  T++YD  NPF IC  +Y PIY G+
Sbjct: 1115 AHFARSLLDTNPTIESQARTARQVMQAAERNMTDATTLNYDFRNPFVICGSTYVPIYKGQ 1174

Query: 120  ESEACVYCGASYLPKYKGEL 139
            +  AC YC A ++P  +G +
Sbjct: 1175 KDVACPYCTARFVPSQEGNI 1194

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AUR8|COPA1_ORYSJ Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica GN=Os03g0711400 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/139 (41%), Positives = 84/139 (60%), Gaps = 5/139 (3%)

Query: 1    MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
            +GL+ME  RKE L+ + + Q    ELAAYFT+ KLQ VH  L L +A  L +K KN+ T 
Sbjct: 1061 LGLRMELKRKE-LRDDVNRQQ---ELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATA 1116

Query: 61   ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
              FA  LLE  P+   A +AR++   C+    D   ++YD  NPF +C  +Y PIY G++
Sbjct: 1117 EHFARMLLENNPNEAQARRARQVQQQCSGK-KDSSELNYDYRNPFVVCGATYVPIYRGQK 1175

Query: 121  SEACVYCGASYLPKYKGEL 139
              +C YCG+ ++P  +G+L
Sbjct: 1176 DVSCPYCGSRFVPSIEGQL 1194

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9AUR7|COPA2_ORYSJ Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/139 (41%), Positives = 84/139 (60%), Gaps = 5/139 (3%)

Query: 1    MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
            +GL+ME  RKE L+ + + Q    ELAAYFT+ KLQ VH  L L +A  L +K KN+ T 
Sbjct: 1061 LGLRMELKRKE-LRDDVNRQQ---ELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATA 1116

Query: 61   ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
              FA  LLE  P+   A +AR++   C+    D   ++YD  NPF +C  +Y PIY G++
Sbjct: 1117 EHFARMLLENNPNEAQARRARQVQQQCSGK-KDSSELNYDYRNPFVVCGATYVPIYRGQK 1175

Query: 121  SEACVYCGASYLPKYKGEL 139
              +C YCG+ ++P  +G+L
Sbjct: 1176 DVSCPYCGSRFVPSIEGQL 1194

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0J3D9|COPA3_ORYSJ Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/139 (41%), Positives = 84/139 (60%), Gaps = 5/139 (3%)

Query: 1    MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
            +GL+ME  RKE L+ + + Q    ELAAYFT+ KLQ VH  L L +A  L +K KN+ T 
Sbjct: 1061 LGLRMELKRKE-LRDDVNRQQ---ELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATA 1116

Query: 61   ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
              FA  LLE  P+   A +AR++   C+    D   ++YD  NPF +C  +Y PIY G++
Sbjct: 1117 EHFARMLLENNPNESQAKRARQVQQQCSGK-KDSCELNYDYRNPFVVCGATYVPIYRGQK 1175

Query: 121  SEACVYCGASYLPKYKGEL 139
              +C YCG+ ++P  +G+L
Sbjct: 1176 DVSCPYCGSRFVPSIEGQL 1194

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBPJ4664.04 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 71/129 (55%)

Query: 11   EQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLEL 70
            E+ +  E    R  EL+ YF  + LQP+H I+ LR A N   KLKNYK+ +   ++LL+L
Sbjct: 1059 ERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINASHKLKNYKSASFLGNKLLQL 1118

Query: 71   GPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGAS 130
              S   A  A + + + + NP D   I+YD H   +IC ++ TP+Y G + + C  CGA 
Sbjct: 1119 AESGPAAEAANRAITLGDRNPHDAFEIEYDPHVEMRICPKTLTPVYSGDDFDVCSVCGAV 1178

Query: 131  YLPKYKGEL 139
            Y   Y  E+
Sbjct: 1179 YHKGYVNEV 1187

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
157108446	1223	coatomer [Aedes aegypti] gi|108868541|gb	0.985	0.112	0.700	3e-49
157134451	1227	coatomer [Aedes aegypti] gi|108870473|gb	0.985	0.111	0.700	3e-49
170050521	1227	coatomer subunit alpha [Culex quinquefas	0.985	0.111	0.700	4e-49
31236603	1231	AGAP010251-PA [Anopheles gambiae str. PE	0.985	0.111	0.686	5e-48
156380509	1224	predicted protein [Nematostella vectensi	1.0	0.113	0.633	8e-48
390367449	1802	PREDICTED: coatomer subunit alpha-like [	1.0	0.077	0.633	1e-47
289629216	1230	coatomer protein complex subunit alpha [	1.0	0.113	0.647	3e-47
195135403	1236	GI16798 [Drosophila mojavensis] gi|19391	1.0	0.112	0.640	4e-47
242015300	1222	coatomer alpha subunit, putative [Pedicu	1.0	0.113	0.647	5e-47
350426055	824	PREDICTED: coatomer subunit alpha-like,	0.978	0.165	0.632	1e-46

>gi|157108446|ref|XP_001650231.1| coatomer [Aedes aegypti] gi|108868541|gb|EAT32766.1| AAEL015001-PA [Aedes aegypti]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 96/137 (70%), Positives = 103/137 (75%)

Query: 1    MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
            +GLQMET RK   K+    Q RICELAAYFTH  LQPVHQILTLRTA NLFFKLKNYKT 
Sbjct: 1061 VGLQMETIRKGLPKNTLDEQKRICELAAYFTHVNLQPVHQILTLRTALNLFFKLKNYKTA 1120

Query: 61   ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
            ASFA RLLELGP  EVA QARK+L  C  N TDEHT+ YDEHNPF +CA +Y PIY G+ 
Sbjct: 1121 ASFARRLLELGPRPEVAQQARKILQACEMNETDEHTLQYDEHNPFTLCAVTYKPIYRGKP 1180

Query: 121  SEACVYCGASYLPKYKG 137
             E C  C ASYLP YKG
Sbjct: 1181 EEKCSLCSASYLPPYKG 1197

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157134451|ref|XP_001663309.1| coatomer [Aedes aegypti] gi|108870473|gb|EAT34698.1| AAEL013098-PA [Aedes aegypti]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 96/137 (70%), Positives = 103/137 (75%)

Query: 1    MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
            +GLQMET RK   K+    Q RICELAAYFTH  LQPVHQILTLRTA NLFFKLKNYKT 
Sbjct: 1065 VGLQMETIRKGLPKNTLDEQKRICELAAYFTHVNLQPVHQILTLRTALNLFFKLKNYKTA 1124

Query: 61   ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
            ASFA RLLELGP  EVA QARK+L  C  N TDEHT+ YDEHNPF +CA +Y PIY G+ 
Sbjct: 1125 ASFARRLLELGPRPEVAQQARKILQACEMNETDEHTLQYDEHNPFTLCAVTYKPIYRGKP 1184

Query: 121  SEACVYCGASYLPKYKG 137
             E C  C ASYLP YKG
Sbjct: 1185 EEKCSLCSASYLPPYKG 1201

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170050521|ref|XP_001861349.1| coatomer subunit alpha [Culex quinquefasciatus] gi|167872144|gb|EDS35527.1| coatomer subunit alpha [Culex quinquefasciatus]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 96/137 (70%), Positives = 103/137 (75%)

Query: 1    MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
            +GLQMET RK   K+    Q RICELAAYFTH  LQPVHQILTLRTA NLFFKLKNYKT 
Sbjct: 1065 VGLQMETIRKGLPKNTLDEQKRICELAAYFTHVNLQPVHQILTLRTALNLFFKLKNYKTA 1124

Query: 61   ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
            ASFA RLLELGP  EVA QARK+L  C  N +DEHT+ YDEHNPF +CA SY PIY G+ 
Sbjct: 1125 ASFARRLLELGPRPEVAQQARKILQACEMNESDEHTLQYDEHNPFTLCAVSYRPIYRGKP 1184

Query: 121  SEACVYCGASYLPKYKG 137
             E C  C ASYLP YKG
Sbjct: 1185 EEKCSLCSASYLPPYKG 1201

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|31236603|ref|XP_319442.1| AGAP010251-PA [Anopheles gambiae str. PEST] gi|21302213|gb|EAA14358.1| AGAP010251-PA [Anopheles gambiae str. PEST]

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 94/137 (68%), Positives = 102/137 (74%)

Query: 1    MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
            +GLQMET RK   K+    Q RICELAAYFTH  LQPVHQILTLRTA NLFFKLKNYKT 
Sbjct: 1069 VGLQMETVRKTLPKNTLDEQKRICELAAYFTHVNLQPVHQILTLRTALNLFFKLKNYKTA 1128

Query: 61   ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
            ASFA RLLELGP  EVA QARK+L  C  N +DEHT+ YDEHNPF +CA +Y PIY G+ 
Sbjct: 1129 ASFARRLLELGPRPEVAQQARKILQACEMNESDEHTLHYDEHNPFTLCAVTYKPIYRGKP 1188

Query: 121  SEACVYCGASYLPKYKG 137
             E C  C ASY P YKG
Sbjct: 1189 EEKCSLCSASYQPPYKG 1205

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156380509|ref|XP_001631811.1| predicted protein [Nematostella vectensis] gi|156218857|gb|EDO39748.1| predicted protein [Nematostella vectensis]

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 88/139 (63%), Positives = 100/139 (71%)

Query: 1    MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
            +GLQME  RKE  K     Q R+CE+AAYFTH  LQP+HQILTLRTA NLFFKLKNYKT 
Sbjct: 1062 VGLQMEIKRKEMPKGTLEEQKRLCEMAAYFTHCNLQPIHQILTLRTAVNLFFKLKNYKTA 1121

Query: 61   ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
             SFA RLLELGP  +VATQ RK+L  C+ NPTD H + YDEHNPF IC  SY P+Y G+ 
Sbjct: 1122 GSFARRLLELGPRPDVATQTRKILQACDKNPTDSHQLKYDEHNPFSICGASYQPLYRGKP 1181

Query: 121  SEACVYCGASYLPKYKGEL 139
             E C +C  SY P +KG L
Sbjct: 1182 QEKCAFCQTSYCPDFKGTL 1200

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|390367449|ref|XP_796805.3| PREDICTED: coatomer subunit alpha-like [Strongylocentrotus purpuratus]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 88/139 (63%), Positives = 104/139 (74%)

Query: 1    MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
            +GL ME YRKEQ K N   Q RICELAAYF+H  LQP+HQILTLRTA NL+FKLKN+KT 
Sbjct: 1640 VGLSMEQYRKEQPKGNLEEQKRICELAAYFSHCNLQPIHQILTLRTAINLWFKLKNFKTA 1699

Query: 61   ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
            A+FA RLLELGP  +VA Q RK+L  C  +P D H ++YDEHNPF ICA +Y PIY G+ 
Sbjct: 1700 AAFARRLLELGPKPDVAQQTRKILQACEKSPNDAHKLNYDEHNPFDICAATYKPIYRGKP 1759

Query: 121  SEACVYCGASYLPKYKGEL 139
             E C   GA YLP++KGE+
Sbjct: 1760 VEKCPLSGACYLPQFKGEV 1778

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|289629216|ref|NP_001166192.1| coatomer protein complex subunit alpha [Bombyx mori] gi|284027820|gb|ADB66734.1| coatomer protein complex subunit alpha [Bombyx mori]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 90/139 (64%), Positives = 103/139 (74%)

Query: 1    MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
            +GL MET RK   K+    Q R CE+AAYFTH KLQPVHQILTLRTA N+FFKLKNY+T 
Sbjct: 1067 VGLAMETARKAMPKNTVDEQKRTCEMAAYFTHCKLQPVHQILTLRTALNMFFKLKNYRTA 1126

Query: 61   ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
            ASFA RLLELGP  EVA QARK+L  C   PTDEH + YDEHNPF IC  SY PIY G+ 
Sbjct: 1127 ASFARRLLELGPRPEVAQQARKILQACEKTPTDEHQLLYDEHNPFSICGISYKPIYRGKP 1186

Query: 121  SEACVYCGASYLPKYKGEL 139
             E C  C AS++P++KG+L
Sbjct: 1187 EEKCSLCAASFMPEHKGKL 1205

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195135403|ref|XP_002012122.1| GI16798 [Drosophila mojavensis] gi|193918386|gb|EDW17253.1| GI16798 [Drosophila mojavensis]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 89/139 (64%), Positives = 104/139 (74%)

Query: 1    MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
            +GL+MET RK   KS    Q R+CE+AAYFTHSKLQPVHQILTLRTA N+FFKLKNYKT 
Sbjct: 1074 VGLKMETVRKGMPKSTLEEQKRLCEMAAYFTHSKLQPVHQILTLRTALNMFFKLKNYKTA 1133

Query: 61   ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
            ASFA RLLEL P  EVA Q RK+L  C  NP DEH ++Y+E NPF ICA S+ P+Y G+ 
Sbjct: 1134 ASFARRLLELAPRPEVAQQVRKILQACEVNPVDEHQLEYEEFNPFNICAISWKPLYRGKP 1193

Query: 121  SEACVYCGASYLPKYKGEL 139
               C +CG+SY P+YKG L
Sbjct: 1194 EVTCPFCGSSYDPQYKGNL 1212

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015300|ref|XP_002428302.1| coatomer alpha subunit, putative [Pediculus humanus corporis] gi|212512887|gb|EEB15564.1| coatomer alpha subunit, putative [Pediculus humanus corporis]

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/139 (64%), Positives = 103/139 (74%)

Query: 1    MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
            +GL MET RK+  KS    Q R+CE+AAYFTH  LQPVHQILTLRTA NLFFKLKNYKT 
Sbjct: 1059 VGLMMETNRKDLPKSTLEEQKRLCEMAAYFTHCNLQPVHQILTLRTALNLFFKLKNYKTA 1118

Query: 61   ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
            ASF  RLLELGP  EVATQARK+L  C+ N  DEH + YDEHNPF +CAR+Y PIY G+ 
Sbjct: 1119 ASFGRRLLELGPRPEVATQARKILQACDKNLVDEHELVYDEHNPFSLCARTYKPIYRGKP 1178

Query: 121  SEACVYCGASYLPKYKGEL 139
               C  C ASY P++KG +
Sbjct: 1179 EITCPLCEASYFPQFKGSI 1197

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350426055|ref|XP_003494319.1| PREDICTED: coatomer subunit alpha-like, partial [Bombus impatiens]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/136 (63%), Positives = 102/136 (75%)

Query: 1   MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
           +GL+MET RK   K+  + Q RICE+AAYFTH  LQPVHQILTLR A N+FFKLKNYKT 
Sbjct: 662 LGLKMETERKNLPKATLAEQKRICEMAAYFTHCNLQPVHQILTLRIAVNMFFKLKNYKTA 721

Query: 61  ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
           ASFA RLLELGP  E+A Q RK+L  C+ NP DEH + YDEHNPF +CA ++ PIY G+ 
Sbjct: 722 ASFARRLLELGPKPELAQQVRKILLACDKNPVDEHQLAYDEHNPFSLCASTFVPIYRGKP 781

Query: 121 SEACVYCGASYLPKYK 136
              C  CGASYLP++K
Sbjct: 782 EVKCPLCGASYLPQFK 797

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
ZFIN|ZDB-GENE-020905-2	1226	copa "coatomer protein complex	1.0	0.113	0.625	1.9e-42
RGD|1310525	568	Copa "coatomer protein complex	1.0	0.244	0.611	6.6e-42
UNIPROTKB|Q27954	1224	COPA "Coatomer subunit alpha"	1.0	0.113	0.611	8.2e-42
UNIPROTKB|P53621	1224	COPA "Coatomer subunit alpha"	1.0	0.113	0.611	1e-41
UNIPROTKB|F1RJX8	1224	COPA "Uncharacterized protein"	1.0	0.113	0.611	1.3e-41
UNIPROTKB|F1PU93	1214	COPA "Coatomer subunit alpha"	1.0	0.114	0.611	3.5e-41
UNIPROTKB|H9L3L2	1134	LOC100859596 "Uncharacterized	1.0	0.122	0.604	3.9e-41
UNIPROTKB|H9KZL3	1169	LOC100859596 "Uncharacterized	1.0	0.118	0.604	4.2e-41
MGI|MGI:1334462	1224	Copa "coatomer protein complex	1.0	0.113	0.611	1.2e-40
UNIPROTKB|G3V6T1	1224	Copa "Protein Copa" [Rattus no	1.0	0.113	0.611	1.2e-40

ZFIN|ZDB-GENE-020905-2 copa "coatomer protein complex, subunit alpha" [Danio rerio (taxid:7955)]

 Score = 461 (167.3 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 87/139 (62%), Positives = 100/139 (71%)

Query:     1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
             +GL MET RK+  K +   Q RICE+AAYFTH  LQPVH +L LRTA NLFFKL+N+KT 
Sbjct:  1064 IGLTMETERKKLPKDSLDEQKRICEMAAYFTHCSLQPVHMVLVLRTALNLFFKLRNFKTA 1123

Query:    61 ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
             A FA RLLELGP  EVA Q RK+LA C  + TD H ++YD HNPF ICA SYTP+Y GR 
Sbjct:  1124 AGFARRLLELGPKPEVAQQTRKILAACEKSLTDAHQLNYDPHNPFDICAASYTPLYRGRP 1183

Query:   121 SEACVYCGASYLPKYKGEL 139
              E C   GA Y PKYKGE+
Sbjct:  1184 VEKCPLSGACYCPKYKGEV 1202

GO:0030117 "membrane coat" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030903 "notochord development" evidence=IMP

RGD|1310525 Copa "coatomer protein complex subunit alpha" [Rattus norvegicus (taxid:10116)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 85/139 (61%), Positives = 99/139 (71%)

Query:     1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
             +GL ME  RK+  K     Q RICE+AAYFTHS LQPVH IL LRTA NLFFKLKN+KT 
Sbjct:   406 VGLCMEIERKKLPKETLDQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTA 465

Query:    61 ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
             A+FA RLLELGP  EVA Q RK+L+ C  NPTD   ++YD HNPF ICA SY PIY G+ 
Sbjct:   466 ATFARRLLELGPKPEVAQQTRKILSACEKNPTDACQLNYDMHNPFDICAASYRPIYRGKP 525

Query:   121 SEACVYCGASYLPKYKGEL 139
              E C   GA Y P++KG++
Sbjct:   526 VEKCPLSGACYSPEFKGQI 544

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0030126 "COPI vesicle coat" evidence=ISO

GO:0030157 "pancreatic juice secretion" evidence=ISO

UNIPROTKB|Q27954 COPA "Coatomer subunit alpha" [Bos taurus (taxid:9913)]

 Score = 455 (165.2 bits), Expect = 8.2e-42, P = 8.2e-42
 Identities = 85/139 (61%), Positives = 101/139 (72%)

Query:     1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
             +GL MET RK+  K     Q RICE+AAYFTHS LQPVH IL LRTA NLFFKLKN++T 
Sbjct:  1062 VGLSMETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTA 1121

Query:    61 ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
             A+FA RLLELGP  EVA Q RK+L+ C  NPTD + ++YD HNPF ICA SY PIY G+ 
Sbjct:  1122 AAFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKP 1181

Query:   121 SEACVYCGASYLPKYKGEL 139
              E C   GA Y P++KG++
Sbjct:  1182 VEKCPLSGACYSPEFKGQI 1200

GO:0005515 "protein binding" evidence=IPI

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0030126 "COPI vesicle coat" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0030157 "pancreatic juice secretion" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|P53621 COPA "Coatomer subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 454 (164.9 bits), Expect = 1.0e-41, P = 1.0e-41
 Identities = 85/139 (61%), Positives = 101/139 (72%)

Query:     1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
             +GL +ET RK+  K     Q RICE+AAYFTHS LQPVH IL LRTA NLFFKLKN+KT 
Sbjct:  1062 VGLSVETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTA 1121

Query:    61 ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
             A+FA RLLELGP  EVA Q RK+L+ C  NPTD + ++YD HNPF ICA SY PIY G+ 
Sbjct:  1122 ATFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKP 1181

Query:   121 SEACVYCGASYLPKYKGEL 139
              E C   GA Y P++KG++
Sbjct:  1182 VEKCPLSGACYSPEFKGQI 1200

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISS;IDA

GO:0005615 "extracellular space" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030157 "pancreatic juice secretion" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0048205 "COPI coating of Golgi vesicle" evidence=TAS

UNIPROTKB|F1RJX8 COPA "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 453 (164.5 bits), Expect = 1.3e-41, P = 1.3e-41
 Identities = 85/139 (61%), Positives = 101/139 (72%)

Query:     1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
             +GL ME  RK+  K +   Q RICE+AAYFTHS LQPVH IL LRTA NLFFKLKN+KT 
Sbjct:  1062 VGLSMEIERKKLPKESLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTA 1121

Query:    61 ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
             A+FA RLLELGP  EVA Q RK+L+ C  NPTD + ++YD HNPF ICA SY PIY G+ 
Sbjct:  1122 ATFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKP 1181

Query:   121 SEACVYCGASYLPKYKGEL 139
              E C   GA Y P++KG++
Sbjct:  1182 VEKCPLSGACYSPEFKGQI 1200

GO:0030157 "pancreatic juice secretion" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|F1PU93 COPA "Coatomer subunit alpha" [Canis lupus familiaris (taxid:9615)]

 Score = 449 (163.1 bits), Expect = 3.5e-41, P = 3.5e-41
 Identities = 85/139 (61%), Positives = 100/139 (71%)

Query:     1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
             +GL ME  RK+  K     Q RICE+AAYFTHS LQPVH IL LRTA NLFFKLKN+KT 
Sbjct:  1052 VGLCMEIERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTA 1111

Query:    61 ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
             A+FA RLLELGP  EVA Q RK+L+ C  NPTD + ++YD HNPF ICA SY PIY G+ 
Sbjct:  1112 ATFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKP 1171

Query:   121 SEACVYCGASYLPKYKGEL 139
              E C   GA Y P++KG++
Sbjct:  1172 VEKCPLSGACYSPEFKGQI 1190

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|H9L3L2 LOC100859596 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 448 (162.8 bits), Expect = 3.9e-41, P = 3.9e-41
 Identities = 84/139 (60%), Positives = 100/139 (71%)

Query:     1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
             +GL ME  RK+  K     Q RICE+AAYFTHS LQPVH IL LRTA NLFFKLKN+KT 
Sbjct:   972 VGLSMEIERKKLPKETLEHQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTA 1031

Query:    61 ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
             A+FA RLLELGP  EVA Q RK+L+ C  NPTD + ++YD HNPF ICA SY PIY G+ 
Sbjct:  1032 ATFARRLLELGPKPEVAQQTRKILSACEKNPTDTYQLNYDMHNPFDICAASYRPIYRGKP 1091

Query:   121 SEACVYCGASYLPKYKGEL 139
              E C   GA Y P+++G++
Sbjct:  1092 VEKCPLSGACYCPEFQGQI 1110

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

UNIPROTKB|H9KZL3 LOC100859596 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 448 (162.8 bits), Expect = 4.2e-41, P = 4.2e-41
 Identities = 84/139 (60%), Positives = 100/139 (71%)

Query:     1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
             +GL ME  RK+  K     Q RICE+AAYFTHS LQPVH IL LRTA NLFFKLKN+KT 
Sbjct:  1007 VGLSMEIERKKLPKETLEHQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTA 1066

Query:    61 ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
             A+FA RLLELGP  EVA Q RK+L+ C  NPTD + ++YD HNPF ICA SY PIY G+ 
Sbjct:  1067 ATFARRLLELGPKPEVAQQTRKILSACEKNPTDTYQLNYDMHNPFDICAASYRPIYRGKP 1126

Query:   121 SEACVYCGASYLPKYKGEL 139
              E C   GA Y P+++G++
Sbjct:  1127 VEKCPLSGACYCPEFQGQI 1145

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0030157 "pancreatic juice secretion" evidence=IEA

MGI|MGI:1334462 Copa "coatomer protein complex subunit alpha" [Mus musculus (taxid:10090)]

 Score = 444 (161.4 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 85/139 (61%), Positives = 99/139 (71%)

Query:     1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
             +GL ME  RK+  K     Q RICE+AAYFTHS LQPVH IL LRTA NLFFKLKN+KT 
Sbjct:  1062 VGLCMEIERKKLPKETLDQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTA 1121

Query:    61 ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
             A+FA RLLELGP  EVA Q RK+L+ C  NPTD   ++YD HNPF ICA SY PIY G+ 
Sbjct:  1122 ATFARRLLELGPKPEVAQQTRKILSACEKNPTDACQLNYDMHNPFDICAASYRPIYRGKP 1181

Query:   121 SEACVYCGASYLPKYKGEL 139
              E C   GA Y P++KG++
Sbjct:  1182 VEKCPLSGACYSPEFKGQI 1200

GO:0005179 "hormone activity" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISO

GO:0030157 "pancreatic juice secretion" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

UNIPROTKB|G3V6T1 Copa "Protein Copa" [Rattus norvegicus (taxid:10116)]

 Score = 444 (161.4 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 85/139 (61%), Positives = 99/139 (71%)

Query:     1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
             +GL ME  RK+  K     Q RICE+AAYFTHS LQPVH IL LRTA NLFFKLKN+KT 
Sbjct:  1062 VGLCMEIERKKLPKETLDQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTA 1121

Query:    61 ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
             A+FA RLLELGP  EVA Q RK+L+ C  NPTD   ++YD HNPF ICA SY PIY G+ 
Sbjct:  1122 ATFARRLLELGPKPEVAQQTRKILSACEKNPTDACQLNYDMHNPFDICAASYRPIYRGKP 1181

Query:   121 SEACVYCGASYLPKYKGEL 139
              E C   GA Y P++KG++
Sbjct:  1182 VEKCPLSGACYSPEFKGQI 1200

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0030157 "pancreatic juice secretion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8CIE6	COPA_MOUSE	No assigned EC number	0.6115	1.0	0.1135	yes	N/A
P53621	COPA_HUMAN	No assigned EC number	0.6115	1.0	0.1135	yes	N/A
Q27954	COPA_BOVIN	No assigned EC number	0.6115	1.0	0.1135	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	139
pfam06957	421	pfam06957, COPI_C, Coatomer (COPI) alpha subunit C	2e-70

>gnl|CDD|219240 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-terminus

 Score =  217 bits (553), Expect = 2e-70
 Identities = 89/139 (64%), Positives = 100/139 (71%)

Query: 1   MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
           +GL MET RKE  K     Q R CELAAYFTH KLQPVH ILTLR+A NLFFKLKN+KT 
Sbjct: 259 VGLLMETKRKELPKDTLEQQKRNCELAAYFTHCKLQPVHMILTLRSALNLFFKLKNFKTA 318

Query: 61  ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
           ASFA RLLEL P  EVA QARK+L  C  NPTD H ++YDEHNPF +C  SY PIY G+ 
Sbjct: 319 ASFARRLLELAPKPEVAQQARKVLQACEKNPTDAHQLNYDEHNPFVVCGASYVPIYRGKP 378

Query: 121 SEACVYCGASYLPKYKGEL 139
              C YCGAS+ P ++G L
Sbjct: 379 DVKCPYCGASFSPGFEGNL 397

This family represents the C-terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit. Coatomer (COPI) is a large cytosolic protein complex which forms a coat around vesicles budding from the Golgi apparatus. Such coatomer-coated vesicles have been proposed to play a role in many distinct steps of intracellular transport. Note that many family members also contain the pfam04053 domain. Length = 421

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	100.0
KOG0292|consensus	1202		100.0
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.04
COG4391	62	Uncharacterized protein conserved in bacteria [Fun	93.34
PF10276	40	zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Z	91.45
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	87.64
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	86.86
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	86.49
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	86.03
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	82.52
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	82.23
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	81.65
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	81.37

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=100.00  E-value=2.1e-68  Score=464.80  Aligned_cols=139  Identities=63%  Similarity=0.984  Sum_probs=118.1

Q ss_pred             CccchhhhhhhhccCCchhhhHHHHHHHHhhhcCCchhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCChHHHHHH
Q psy2686           1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQA   80 (139)
Q Consensus         1 ~gl~iEl~Rr~l~~~~~~~~kR~lELaAYFT~c~Lqp~H~~LaLr~Am~~~~K~kN~~tAa~fArRLLel~p~~~~~~qA   80 (139)
                      +||+||++||++++++.+++||+||||||||||+|||+|++||||+||+++||+|||+||++|||||||++|++++++||
T Consensus       260 lgl~iEl~Rr~l~~~~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qA  339 (422)
T PF06957_consen  260 LGLSIELERRELPKDPVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQA  339 (422)
T ss_dssp             HHHHHHHHHCTS-TTTHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHH
T ss_pred             HHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            58999999999999988899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCceeecCCCCCCeeeeccccccccCCCccccccCCCccccCCCCCCC
Q psy2686          81 RKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPKYKGEL  139 (139)
Q Consensus        81 rkil~~~e~~~~da~~i~yD~~~~F~iC~~s~tPIy~g~~~v~Cp~cga~y~p~~kG~l  139 (139)
                      |||+++||++|+|+|+||||++|||+||++||||||+|+|+|+||||||+|+|+|||+|
T Consensus       340 rKil~~~e~~~tDa~~i~yD~~npF~ICa~s~tPIY~G~~~v~CP~cgA~y~~~~kG~l  398 (422)
T PF06957_consen  340 RKILQACERNPTDAHEIDYDERNPFDICAASYTPIYRGSPSVKCPYCGAKYHPEYKGQL  398 (422)
T ss_dssp             HHHHHHHCCS--BSS--S--TTS-EEEBTTT--EEETTS-EEE-TTT--EEEGGGTTSB
T ss_pred             HHHHHHHhcCCCCceecCCCCCCCceeeecccccccCCCCCeeCCCCCCccChhhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999986

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>KOG0292|consensus

Probab=100.00  E-value=3.4e-53  Score=391.36  Aligned_cols=136  Identities=56%  Similarity=0.931  Sum_probs=133.4

Q ss_pred             CccchhhhhhhhccCCchhhhHHHHHHHHhhhcCCchhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCChHHHHHH
Q psy2686           1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQA   80 (139)
Q Consensus         1 ~gl~iEl~Rr~l~~~~~~~~kR~lELaAYFT~c~Lqp~H~~LaLr~Am~~~~K~kN~~tAa~fArRLLel~p~~~~~~qA   80 (139)
                      +||+||++||+|++++   .+|+||||||||||+|||.|++||||+||+++||+|||+||++||+|||++.|.+++++||
T Consensus      1047 ~gL~~E~~Rr~l~~~~---~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~ 1123 (1202)
T KOG0292|consen 1047 VGLSVELERRKLKKPN---LEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQA 1123 (1202)
T ss_pred             hhheeeeeecccCCch---HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHH
Confidence            5899999999999988   7888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCceeecCCCCCCeeeeccccccccCCCccccccCCCccccCCCCCCC
Q psy2686          81 RKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPKYKGEL  139 (139)
Q Consensus        81 rkil~~~e~~~~da~~i~yD~~~~F~iC~~s~tPIy~g~~~v~Cp~cga~y~p~~kG~l  139 (139)
                      |||+++||+||+|+++|+||+||||+||+.||+|||+|+|.|+||||||+|.|.++|+|
T Consensus      1124 rki~~a~eknp~Da~~l~yd~~n~f~iC~~t~~Piy~g~p~~~cp~cga~y~~~~~g~i 1182 (1202)
T KOG0292|consen 1124 RKIKQAAEKNPTDAYELNYDPHNPFVICGATYVPIYRGRPDVSCPYCGACFVPSSKGNI 1182 (1202)
T ss_pred             HHHHHHhhcCcccccccCcccCCCeeEecccceeeecCCCCcCCCcccceeccccCCce
Confidence            99999999999999999999999999999999999999999999999999999999985

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.04  E-value=0.052  Score=35.23  Aligned_cols=33  Identities=27%  Similarity=0.575  Sum_probs=26.8

Q ss_pred             HhhhcHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q psy2686          52 FKLKNYKTTASFAHRLLELGPSMEVATQARKLL   84 (139)
Q Consensus        52 ~K~kN~~tAa~fArRLLel~p~~~~~~qArkil   84 (139)
                      ||.|||.+|-.++.+||++.|....+.+=++++
T Consensus        12 ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen   12 YKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            999999999999999999999887766655554

>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.34  E-value=0.037  Score=37.58  Aligned_cols=20  Identities=20%  Similarity=0.629  Sum_probs=15.8

Q ss_pred             cccccCCCccccccCCCcccc
Q psy2686         112 YTPIYHGRESEACVYCGASYL  132 (139)
Q Consensus       112 ~tPIy~g~~~v~Cp~cga~y~  132 (139)
                      |-+| ..+..|.|||||+.|.
T Consensus        40 ~L~m-g~~gev~CPYC~t~y~   59 (62)
T COG4391          40 FLDM-GDEGEVVCPYCSTRYR   59 (62)
T ss_pred             EEEc-CCCCcEecCccccEEE
Confidence            4455 5578899999999985

>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.45  E-value=0.085  Score=32.76  Aligned_cols=21  Identities=29%  Similarity=0.757  Sum_probs=13.8

Q ss_pred             cccccCCCccccccCCCcccc
Q psy2686         112 YTPIYHGRESEACVYCGASYL  132 (139)
Q Consensus       112 ~tPIy~g~~~v~Cp~cga~y~  132 (139)
                      |-+|-+....+.|||||..|.
T Consensus        20 yl~l~~~~~~~~CpYCg~~yv   40 (40)
T PF10276_consen   20 YLNLDDEPGPVVCPYCGTRYV   40 (40)
T ss_dssp             EEE-TTTTCEEEETTTTEEEE
T ss_pred             EEecCCCCCeEECCCCCCEEC
Confidence            334433335799999999873

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=87.64  E-value=0.34  Score=29.93  Aligned_cols=12  Identities=42%  Similarity=0.955  Sum_probs=10.7

Q ss_pred             cccccCCCcccc
Q psy2686         121 SEACVYCGASYL  132 (139)
Q Consensus       121 ~v~Cp~cga~y~  132 (139)
                      .++||+||+...
T Consensus        21 ~~~Cp~CG~~~~   32 (46)
T PRK00398         21 GVRCPYCGYRIL   32 (46)
T ss_pred             ceECCCCCCeEE
Confidence            799999999775

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=86.86  E-value=0.39  Score=36.86  Aligned_cols=31  Identities=23%  Similarity=0.561  Sum_probs=24.7

Q ss_pred             eeeccccccccC-CCccccccCCCccccCCCC
Q psy2686         106 QICARSYTPIYH-GRESEACVYCGASYLPKYK  136 (139)
Q Consensus       106 ~iC~~s~tPIy~-g~~~v~Cp~cga~y~p~~k  136 (139)
                      -+|..+=+.-|- ++..+.||+||+.|.+.+.
T Consensus        10 r~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~~~   41 (129)
T TIGR02300        10 RICPNTGSKFYDLNRRPAVSPYTGEQFPPEEA   41 (129)
T ss_pred             ccCCCcCccccccCCCCccCCCcCCccCcchh
Confidence            367776677774 7889999999999998854

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=86.49  E-value=0.41  Score=35.34  Aligned_cols=28  Identities=21%  Similarity=0.691  Sum_probs=20.6

Q ss_pred             eeccccccccC-CCccccccCCCccccCC
Q psy2686         107 ICARSYTPIYH-GRESEACVYCGASYLPK  134 (139)
Q Consensus       107 iC~~s~tPIy~-g~~~v~Cp~cga~y~p~  134 (139)
                      +|...=+.-|- ++..+.||+||+.|.|+
T Consensus        11 ~Cp~CG~kFYDLnk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   11 TCPSCGAKFYDLNKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             cCCCCcchhccCCCCCccCCCCCCccCcc
Confidence            55555555563 55668899999999987

The function of members of this family is unknown.

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=86.03  E-value=0.43  Score=31.52  Aligned_cols=26  Identities=27%  Similarity=0.768  Sum_probs=19.9

Q ss_pred             eeeccccccccCCCccccccCCCccccCC
Q psy2686         106 QICARSYTPIYHGRESEACVYCGASYLPK  134 (139)
Q Consensus       106 ~iC~~s~tPIy~g~~~v~Cp~cga~y~p~  134 (139)
                      .+|...|   -.|.+.|.||-|||.||-+
T Consensus         9 ~~Cg~~~---~~~dDiVvCp~CgapyHR~   34 (54)
T PF14446_consen    9 PVCGKKF---KDGDDIVVCPECGAPYHRD   34 (54)
T ss_pred             hhhCCcc---cCCCCEEECCCCCCcccHH
Confidence            3555555   4489999999999999854

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=82.52  E-value=0.68  Score=29.01  Aligned_cols=23  Identities=26%  Similarity=0.602  Sum_probs=16.2

Q ss_pred             eccccccccCCCccccccCCCcccc
Q psy2686         108 CARSYTPIYHGRESEACVYCGASYL  132 (139)
Q Consensus       108 C~~s~tPIy~g~~~v~Cp~cga~y~  132 (139)
                      |...++.  .....++||+||...+
T Consensus         8 Cg~~~~~--~~~~~irC~~CG~rIl   30 (44)
T smart00659        8 CGRENEI--KSKDVVRCRECGYRIL   30 (44)
T ss_pred             CCCEeec--CCCCceECCCCCceEE
Confidence            4444444  2567899999999865

present in RNA polymerase I, II and III

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=82.23  E-value=0.65  Score=27.47  Aligned_cols=16  Identities=44%  Similarity=0.889  Sum_probs=12.0

Q ss_pred             ccCCC-ccccccCCCcc
Q psy2686         115 IYHGR-ESEACVYCGAS  130 (139)
Q Consensus       115 Iy~g~-~~v~Cp~cga~  130 (139)
                      ||.|. +...||.||+.
T Consensus        11 i~~g~~~p~~CP~Cg~~   27 (34)
T cd00729          11 IHEGEEAPEKCPICGAP   27 (34)
T ss_pred             EeECCcCCCcCcCCCCc
Confidence            34554 77899999984

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=81.65  E-value=0.77  Score=29.77  Aligned_cols=26  Identities=31%  Similarity=0.622  Sum_probs=18.1

Q ss_pred             eccccccccCCCccccccCCCccccCC
Q psy2686         108 CARSYTPIYHGRESEACVYCGASYLPK  134 (139)
Q Consensus       108 C~~s~tPIy~g~~~v~Cp~cga~y~p~  134 (139)
                      |+..+.-+ ...+.++||+||++.+-+
T Consensus        12 Cg~~~~~~-~~~~~irCp~Cg~rIl~K   37 (49)
T COG1996          12 CGREVELD-QETRGIRCPYCGSRILVK   37 (49)
T ss_pred             cCCeeehh-hccCceeCCCCCcEEEEe
Confidence            55555433 367889999999987643

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=81.37  E-value=6.6  Score=24.30  Aligned_cols=25  Identities=12%  Similarity=0.291  Sum_probs=21.2

Q ss_pred             HHHhhhcHHHHHHHHHHHHhcCCCh
Q psy2686          50 LFFKLKNYKTTASFAHRLLELGPSM   74 (139)
Q Consensus        50 ~~~K~kN~~tAa~fArRLLel~p~~   74 (139)
                      ..++.|+|..|...-+++|+..|..
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~P~~   30 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQDPDN   30 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCSTTH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            4578899999999999999998863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
3mkr_B	320	Crystal Structure Of Yeast AlphaEPSILON-Cop Subcomp		6e-47
3mv2_A	325	Crystal Structure Of A-Cop In Complex With E-Cop Le		2e-17
3mv3_A	325	Crystal Structure Of A-Cop In Complex With E-Cop Le		2e-17

>pdb|3MKR|B Chain B, Crystal Structure Of Yeast AlphaEPSILON-Cop Subcomplex Of The Copi Vesicular Coat Length = 320

Iteration: 1
 Score =  182 bits (461), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 85/139 (61%), Positives = 101/139 (72%)
Query: 1   MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
           +GL MET RK+  K     Q RICE+AAYFTHS LQPVH IL LRTA NLFFKLKN++T 
Sbjct: 158 VGLSMETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTA 217
Query: 61  ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
           A+FA RLLELGP  EVA Q RK+L+ C  NPTD + ++YD HNPF ICA SY PIY G+ 
Sbjct: 218 AAFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKP 277
Query: 121 SEACVYCGASYLPKYKGEL 139
            E C   GA Y P++KG++
Sbjct: 278 VEKCPLSGACYSPEFKGQI 296

>pdb|3MV2|A Chain A, Crystal Structure Of A-Cop In Complex With E-Cop Length = 325

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
Query: 1   MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
           +GL +E  R+  LK  E + VR+ ELAAYFT +KL P+H+   L+ A +  FK KN+   
Sbjct: 170 LGLSIELERR-SLK--EGNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQA 226
Query: 61  ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
           + FA   L++  S   A QARK+    ++  +D   ID+D +  F ICA +Y PIY    
Sbjct: 227 SYFAGEFLKIISSGPRAEQARKIKNKADSMASDAIPIDFDPYAKFDICAATYKPIYEDTP 286
Query: 121 SEACVYCGASYL 132
           S +    G+ Y+
Sbjct: 287 SVSDPLTGSKYV 298

>pdb|3MV3|A Chain A, Crystal Structure Of A-Cop In Complex With E-Cop Length = 325

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 1   MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
           +GL +E  R+  LK  E + VR  ELAAYFT +KL P+H+   L+ A +  FK KN+   
Sbjct: 170 LGLSIELERR-SLK--EGNTVRXLELAAYFTKAKLSPIHRTNALQVAXSQHFKHKNFLQA 226
Query: 61  ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
           + FA   L++  S   A QARK+    ++  +D   ID+D +  F ICA +Y PIY    
Sbjct: 227 SYFAGEFLKIISSGPRAEQARKIKNKADSXASDAIPIDFDPYAKFDICAATYKPIYEDTP 286
Query: 121 SEACVYCGASYL 132
           S +    G+ Y+
Sbjct: 287 SVSDPLTGSKYV 298

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	2e-59
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	1e-56

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 320

 Score =  185 bits (470), Expect = 2e-59
 Identities = 85/139 (61%), Positives = 101/139 (72%)

Query: 1   MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
           +GL MET RK+  K     Q RICE+AAYFTHS LQPVH IL LRTA NLFFKLKN++T 
Sbjct: 158 VGLSMETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTA 217

Query: 61  ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
           A+FA RLLELGP  EVA Q RK+L+ C  NPTD + ++YD HNPF ICA SY PIY G+ 
Sbjct: 218 AAFARRLLELGPKPEVAQQTRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKP 277

Query: 121 SEACVYCGASYLPKYKGEL 139
            E C   GA Y P++KG++
Sbjct: 278 VEKCPLSGACYSPEFKGQI 296

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A Length = 325

 Score =  178 bits (452), Expect = 1e-56
 Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 3/139 (2%)

Query: 1   MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTT 60
           +GL +E  R+   + N     R+ ELAAYFT +KL P+H+   L+ A +  FK KN+   
Sbjct: 170 LGLSIELERRSLKEGNTV---RMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQA 226

Query: 61  ASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRE 120
           + FA   L++  S   A QARK+    ++  +D   ID+D +  F ICA +Y PIY    
Sbjct: 227 SYFAGEFLKIISSGPRAEQARKIKNKADSMASDAIPIDFDPYAKFDICAATYKPIYEDTP 286

Query: 121 SEACVYCGASYLPKYKGEL 139
           S +    G+ Y+   K ++
Sbjct: 287 SVSDPLTGSKYVITEKDKI 305

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	100.0
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	100.0
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.67
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	90.58
1pc2_A	152	Mitochondria fission protein; unknown function; NM	90.22
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	89.12
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	88.14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	85.48
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	84.44
2jvm_A	80	Uncharacterized protein; alpha+beta, structural ge	83.77
2jrr_A	67	Uncharacterized protein; solution structure, SIR90	80.9

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=100.00  E-value=3.1e-68  Score=449.38  Aligned_cols=139  Identities=61%  Similarity=1.028  Sum_probs=136.4

Q ss_pred             CccchhhhhhhhccCCchhhhHHHHHHHHhhhcCCchhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCChHHHHHH
Q psy2686           1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQA   80 (139)
Q Consensus         1 ~gl~iEl~Rr~l~~~~~~~~kR~lELaAYFT~c~Lqp~H~~LaLr~Am~~~~K~kN~~tAa~fArRLLel~p~~~~~~qA   80 (139)
                      +||+||++||++++++++|+||+||||||||||+|||.|++||||+||+++||+|||+||++|||||||++|++++++||
T Consensus       158 lal~iEl~Rr~l~~~~~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~~~qA  237 (320)
T 3mkr_B          158 VGLSMETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQQT  237 (320)
T ss_dssp             HHHHHHHHHTTSCCCSHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCchhHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            58999999999988778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCceeecCCCCCCeeeeccccccccCCCccccccCCCccccCCCCCCC
Q psy2686          81 RKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPKYKGEL  139 (139)
Q Consensus        81 rkil~~~e~~~~da~~i~yD~~~~F~iC~~s~tPIy~g~~~v~Cp~cga~y~p~~kG~l  139 (139)
                      |||+++||++|+|+|+||||++|||+||++||||||+|+|+|+||||||+|+|+|||+|
T Consensus       238 rkil~~ce~~~~da~eidyD~~~~f~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~kG~l  296 (320)
T 3mkr_B          238 RKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQI  296 (320)
T ss_dssp             HHHHHHHHHSCCBSSCCSCCTTSCCCBBTTTCCBCCTTSCCEECTTTCCEECGGGTTSB
T ss_pred             HHHHHHHhcCCCCccccCCCCCCccceecCCCccccCCCCCccCCCCCCeechhhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999986

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=100.00  E-value=3.2e-67  Score=443.97  Aligned_cols=136  Identities=36%  Similarity=0.557  Sum_probs=133.4

Q ss_pred             CccchhhhhhhhccCCchhhhHHHHHHHHhhhcCCchhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCChHHHHHH
Q psy2686           1 MGLQMETYRKEQLKSNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQA   80 (139)
Q Consensus         1 ~gl~iEl~Rr~l~~~~~~~~kR~lELaAYFT~c~Lqp~H~~LaLr~Am~~~~K~kN~~tAa~fArRLLel~p~~~~~~qA   80 (139)
                      +||+||++||++++++   ++|+||||||||||+|||+|++||||+||+++||+|||+||++||||||+++|++++++||
T Consensus       170 lal~iEl~Rr~l~~~~---~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qA  246 (325)
T 3mv2_A          170 LGLSIELERRSLKEGN---TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQA  246 (325)
T ss_dssp             HHHHHHHHHHTCCTTC---HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHH
T ss_pred             HHHHHHHHHHhcCccc---HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            5899999999998866   8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCceeecCCCCCCeeeeccccccccCCCccccccCCCccccCCCCCCC
Q psy2686          81 RKLLAICNANPTDEHTIDYDEHNPFQICARSYTPIYHGRESEACVYCGASYLPKYKGEL  139 (139)
Q Consensus        81 rkil~~~e~~~~da~~i~yD~~~~F~iC~~s~tPIy~g~~~v~Cp~cga~y~p~~kG~l  139 (139)
                      |||+++||++|+|+|+||||++|||+||++||||||+|+|+|+||||||+|+|+|||+|
T Consensus       247 rkil~~ce~~~~Da~eidyD~~~~F~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~kG~l  305 (325)
T 3mv2_A          247 RKIKNKADSMASDAIPIDFDPYAKFDICAATYKPIYEDTPSVSDPLTGSKYVITEKDKI  305 (325)
T ss_dssp             HHHHHHHHTSCCCSSCCSCCTTSCEEECTTTCCEEESSSCEEECTTTCCEEEGGGTTSB
T ss_pred             HHHHHHHhcCCCCccccCCCCCCCceeecCCcccccCCCCCccCCCCCCeechhhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999986

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.67  E-value=0.99  Score=33.54  Aligned_cols=68  Identities=10%  Similarity=0.146  Sum_probs=47.6

Q ss_pred             cCCchhhhHHHHH-HHHhhhcCCchhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q psy2686          14 KSNESSQVRICEL-AAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKLL   84 (139)
Q Consensus        14 ~~~~~~~kR~lEL-aAYFT~c~Lqp~H~~LaLr~Am~~~~K~kN~~tAa~fArRLLel~p~~~~~~qArkil   84 (139)
                      ..+.+|++|.++| ...|..-   |.++.=.|=-----.||.|||..|-.++.+||+..|....+..=++.+
T Consensus        53 S~~~~d~~~GI~LLe~l~~~~---~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           53 STDVNDERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhcC---cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            3455678888887 5566543   545444443333446999999999999999999999877665544444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=90.58  E-value=2.3  Score=30.97  Aligned_cols=69  Identities=14%  Similarity=0.118  Sum_probs=48.0

Q ss_pred             CCchhhhHHHHHHHHhhhcCCchhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q psy2686          15 SNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKLL   84 (139)
Q Consensus        15 ~~~~~~kR~lELaAYFT~c~Lqp~H~~LaLr~Am~~~~K~kN~~tAa~fArRLLel~p~~~~~~qArkil   84 (139)
                      .++.|++|.++|-----+-+ .|.++.-.|-.-=-..||.|||..|-.++.+||+..|....+..=++.+
T Consensus        49 ~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           49 RYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             SSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34566777777655333321 2556666666666667999999999999999999999876655544443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=90.22  E-value=0.79  Score=34.34  Aligned_cols=67  Identities=15%  Similarity=0.209  Sum_probs=46.4

Q ss_pred             chhhhHHHHHHHHhhhcCCch-hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q psy2686          17 ESSQVRICELAAYFTHSKLQP-VHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKLLA   85 (139)
Q Consensus        17 ~~~~kR~lELaAYFT~c~Lqp-~H~~LaLr~Am~~~~K~kN~~tAa~fArRLLel~p~~~~~~qArkil~   85 (139)
                      +.+++|.++|-----.-+ .| .|+---...|+.- ||.|||..|-.+.+++|++.|....+...++.+.
T Consensus        48 ~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~-~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie  115 (152)
T 1pc2_A           48 NDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN-YRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  115 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHH-HHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHH-HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            344555554432222211 24 4566666777777 9999999999999999999998888777776664

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=89.12  E-value=0.48  Score=35.67  Aligned_cols=68  Identities=10%  Similarity=0.096  Sum_probs=43.9

Q ss_pred             CCchhhhHHHHHHHHhhhcCCchhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q psy2686          15 SNESSQVRICELAAYFTHSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKLL   84 (139)
Q Consensus        15 ~~~~~~kR~lELaAYFT~c~Lqp~H~~LaLr~Am~~~~K~kN~~tAa~fArRLLel~p~~~~~~qArkil   84 (139)
                      .+.+|++|.++|-----+.  .|.++.-.|------.||.|||..|-.++.+||+..|....+..=++.+
T Consensus        53 ~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           53 TDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             SSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            3456677777765433331  2333333333333345999999999999999999999876655544444

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=88.14  E-value=0.13  Score=32.32  Aligned_cols=13  Identities=31%  Similarity=0.718  Sum_probs=10.9

Q ss_pred             CccccccCCCccc
Q psy2686         119 RESEACVYCGASY  131 (139)
Q Consensus       119 ~~~v~Cp~cga~y  131 (139)
                      -|.|+|||||-+.
T Consensus        21 lP~IrCpyCGyri   33 (48)
T 4ayb_P           21 LPGVRCPYCGYKI   33 (48)
T ss_dssp             CSSSCCTTTCCSC
T ss_pred             CCCcccCccCcEE
Confidence            5899999999654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=85.48  E-value=1.5  Score=31.12  Aligned_cols=54  Identities=11%  Similarity=0.054  Sum_probs=40.3

Q ss_pred             hcCCchhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q psy2686          32 HSKLQPVHQILTLRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKLLAI   86 (139)
Q Consensus        32 ~c~Lqp~H~~LaLr~Am~~~~K~kN~~tAa~fArRLLel~p~~~~~~qArkil~~   86 (139)
                      -..+.|.+-..-...|+ ..++.|++..|...-++.|++.|+++..++|++.+..
T Consensus        96 al~l~P~~~~~~~~lg~-~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A~~ll~~  149 (151)
T 3gyz_A           96 AFALGKNDYTPVFHTGQ-CQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDA  149 (151)
T ss_dssp             HHHHSSSCCHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHhhCCCCcHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            33455555544444444 3468899999999999999999999999999988764

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=84.44  E-value=4.2  Score=31.39  Aligned_cols=70  Identities=17%  Similarity=0.171  Sum_probs=41.7

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCCCceeecCCCCCCeeee---ccccccccCCCc
Q psy2686          44 LRTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKLLAICNANPTDEHTIDYDEHNPFQIC---ARSYTPIYHGRE  120 (139)
Q Consensus        44 Lr~Am~~~~K~kN~~tAa~fArRLLel~p~~~~~~qArkil~~~e~~~~da~~i~yD~~~~F~iC---~~s~tPIy~g~~  120 (139)
                      +...+.+|-..|++.++..|-. +++-  -..-.+..++++..-+..         |+ ..+-+|   +..    |.|.+
T Consensus       123 y~~~a~~A~eEgd~~~a~~f~~-i~~~--E~~H~~~~~~ll~~l~~~---------~~-~~~~~C~~CG~i----~~g~~  185 (202)
T 1yuz_A          123 YPAFIRKAQEEGNSKAVHVFTR-AKLA--ESVHAERYLAAYNDIDAP---------DD-DKFHLCPICGYI----HKGED  185 (202)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHH-HHHH--HHHHHHHHHHHHHTTTCC---------CS-CCEEECSSSCCE----EESSC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHhcC---------CC-CcEEEECCCCCE----EcCcC
Confidence            5566777777787777766644 3321  022234466777666554         11 124444   444    44677


Q ss_pred             cccccCCCcc
Q psy2686         121 SEACVYCGAS  130 (139)
Q Consensus       121 ~v~Cp~cga~  130 (139)
                      ...||.||+.
T Consensus       186 p~~CP~C~~~  195 (202)
T 1yuz_A          186 FEKCPICFRP  195 (202)
T ss_dssp             CSBCTTTCCB
T ss_pred             CCCCCCCCCC
Confidence            7999999985

>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}

Probab=83.77  E-value=0.37  Score=33.17  Aligned_cols=14  Identities=29%  Similarity=0.755  Sum_probs=12.1

Q ss_pred             CccccccCCCcccc
Q psy2686         119 RESEACVYCGASYL  132 (139)
Q Consensus       119 ~~~v~Cp~cga~y~  132 (139)
                      ...+.|||||..|.
T Consensus        51 ~g~~~CpYCg~~f~   64 (80)
T 2jvm_A           51 TGFVECGYCDRRYI   64 (80)
T ss_dssp             TCEEECSSSSCEEE
T ss_pred             CCeEECCCCCCEEE
Confidence            56799999999985

>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}

Probab=80.90  E-value=0.48  Score=31.54  Aligned_cols=16  Identities=31%  Similarity=0.708  Sum_probs=13.1

Q ss_pred             CccccccCCCccccCC
Q psy2686         119 RESEACVYCGASYLPK  134 (139)
Q Consensus       119 ~~~v~Cp~cga~y~p~  134 (139)
                      ...+.|||||..|.-+
T Consensus        38 ~g~~~CpYCg~~f~l~   53 (67)
T 2jrr_A           38 TGWVECPYCDCKYVLK   53 (67)
T ss_dssp             TSEEEETTTTEEEEET
T ss_pred             CCeEECCCCCCEEEEC
Confidence            5679999999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	93.02
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	89.16
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	84.55

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.02  E-value=0.22  Score=34.67  Aligned_cols=67  Identities=10%  Similarity=0.123  Sum_probs=50.8

Q ss_pred             CchhhhHHHHHHHHhhhcCCchhhHHHHH-HHHHHHHHhhhcHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q psy2686          16 NESSQVRICELAAYFTHSKLQPVHQILTL-RTATNLFFKLKNYKTTASFAHRLLELGPSMEVATQARKLLA   85 (139)
Q Consensus        16 ~~~~~kR~lELaAYFT~c~Lqp~H~~LaL-r~Am~~~~K~kN~~tAa~fArRLLel~p~~~~~~qArkil~   85 (139)
                      +.+|+++.++|---.  .+..|.|+.-+| -.|+. -||.|+|..|..+..++|++.|....+..-++.+.
T Consensus        50 ~~~d~~~gI~lLe~~--~~~~p~~~rd~lY~Lav~-yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1          50 DVNDERLGVKILTDI--YKEAESRRRECLYYLTIG-CYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             CHHHHHHHHHHHHHH--HHHCGGGHHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH--HhcCchhHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence            456677777775433  234677876665 55555 67999999999999999999999888777777664

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=89.16  E-value=0.054  Score=30.71  Aligned_cols=15  Identities=27%  Similarity=0.525  Sum_probs=13.0

Q ss_pred             cCCCccccccCCCcc
Q psy2686         116 YHGRESEACVYCGAS  130 (139)
Q Consensus       116 y~g~~~v~Cp~cga~  130 (139)
                      +.|++..+||.||+.
T Consensus        15 ~~g~~Pe~CPvCg~~   29 (36)
T d1yuza2          15 HKGEDFEKCPICFRP   29 (36)
T ss_dssp             EESSCCSBCTTTCCB
T ss_pred             eeCCCCCcCCCCCCc
Confidence            468899999999986

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.55  E-value=0.14  Score=28.97  Aligned_cols=15  Identities=33%  Similarity=0.614  Sum_probs=12.6

Q ss_pred             cCCCccccccCCCcc
Q psy2686         116 YHGRESEACVYCGAS  130 (139)
Q Consensus       116 y~g~~~v~Cp~cga~  130 (139)
                      +.|++..+||.||+.
T Consensus        15 ~~g~~P~~CPvCg~~   29 (37)
T d1nnqa2          15 AVDEAPEYCPVCGAP   29 (37)
T ss_dssp             EESCCCSBCTTTCCB
T ss_pred             ecCCCCCcCCCCCCc
Confidence            357888999999986